Query 025547
Match_columns 251
No_of_seqs 205 out of 886
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 12:32:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025547.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025547hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vqow1 d.59.1.1 (W:1-154) Arc 100.0 2.6E-58 1.9E-62 384.3 16.7 153 92-251 1-154 (154)
2 d2gycx1 d.59.1.1 (X:3-58) Prok 99.6 7.9E-16 5.8E-20 106.6 6.4 55 93-147 2-56 (56)
3 d1bxya_ d.59.1.1 (A:) Prokaryo 99.6 1.9E-15 1.4E-19 106.1 7.7 57 93-149 4-60 (60)
4 d2zjrw1 d.59.1.1 (W:1-55) Prok 99.4 3.3E-14 2.4E-18 98.0 4.9 54 94-147 2-55 (55)
5 d1y88a2 c.52.1.30 (A:3-127) Hy 28.1 8.2 0.0006 27.7 0.9 42 120-161 79-124 (125)
6 d1m45a_ a.39.1.5 (A:) Myosin L 27.4 18 0.0013 25.6 2.7 19 186-204 96-114 (146)
7 d1wdcc_ a.39.1.5 (C:) Myosin R 22.5 29 0.0021 24.6 3.2 13 186-198 135-147 (152)
8 d1gkya_ c.37.1.1 (A:) Guanylat 22.5 71 0.0052 23.3 5.7 43 120-162 91-137 (186)
9 d1u7pa_ c.108.1.17 (A:) Magnes 18.6 91 0.0066 22.0 5.4 54 103-158 99-155 (164)
10 d1geqa_ c.1.2.4 (A:) Trp synth 17.6 20 0.0014 29.2 1.2 19 141-159 9-27 (248)
No 1
>d1vqow1 d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=100.00 E-value=2.6e-58 Score=384.31 Aligned_cols=153 Identities=20% Similarity=0.371 Sum_probs=145.0
Q ss_pred eEEEEeecCCCCCCHHHHHHHHHhCCCCcCcEEEEeCChhhHHHHHhccCeEEEecCChHHHHHHHHHhcccccCCceec
Q 025547 92 LLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIP 171 (251)
Q Consensus 92 l~~ViRirg~~~~~~~~~k~L~~LrL~ki~~~Vfv~~n~~~~~mL~~V~pyV~~G~p~~~tv~~Li~KRG~~k~~~~~i~ 171 (251)
+++||||||.+++||++++||++|||+++|++||+++||+++|||++|+|||||||||++||++||||||+++.|++ |
T Consensus 1 m~aViRIRg~ig~~~~~r~tL~~LrL~k~~~~V~~~~tp~~~gML~kVk~yVt~G~~~~~tv~~Li~kRG~~~~g~~--~ 78 (154)
T d1vqow1 1 MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDA--D 78 (154)
T ss_dssp CEEEEECSCSTTSCHHHHHHHHHTTCCSTTEEEEECCCHHHHHHHHHSTTSEEEECCCHHHHHHHHHHHCCBSSSCC--C
T ss_pred CeeEEEecCCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHhhccceeEecCCHHHHHHHHHHhcccccCCC--c
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999888874 8
Q ss_pred CCChhhHhhhcccCCcccHHHHHHHHHhcCCChhhhhcccCcccCCCCCCCcCCcccccccCCCCC-CChHHHHHHHHhh
Q 025547 172 LTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAG-NREEEINELISKM 250 (251)
Q Consensus 172 ltdn~iiee~lg~~gi~ciEDlv~eI~~~g~~f~~v~~fl~pF~L~~P~~G~~~~k~~~~~gG~~G-~r~~~In~Li~rM 250 (251)
||||+++| ++||+|+|||||+|++ |++|.++++|+|||+||||++||++++++|.+||++| ||||.||+||+||
T Consensus 79 lt~e~i~~----~~g~~~iedl~~~i~~-g~~~~~~~~~~~pFrL~pP~~g~~~~k~~~~~gG~~Gnyrge~IN~Li~rM 153 (154)
T d1vqow1 79 VDDEWVAE----HTDYDDISGLAFALLS-EETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAM 153 (154)
T ss_dssp CCHHHHHH----HSSSSSHHHHHHHHHT-TSCCTTTTTBCSEEECCCCTTCCSCSSSBGGGTSSBEECCHHHHHHHHHHT
T ss_pred CCHhHhcc----ccCcccHHHHHHHHHc-CCceeeccCCcCCeeCCCcccchhhcccccccCCccCCccHHHHHHHHHHc
Confidence 99998866 3589999999999998 7777788999999999999999999999999999999 6999999999999
Q ss_pred C
Q 025547 251 N 251 (251)
Q Consensus 251 ~ 251 (251)
-
T Consensus 154 ~ 154 (154)
T d1vqow1 154 R 154 (154)
T ss_dssp C
T ss_pred C
Confidence 4
No 2
>d2gycx1 d.59.1.1 (X:3-58) Prokaryotic ribosomal protein L30 {Escherichia coli [TaxId: 562]}
Probab=99.59 E-value=7.9e-16 Score=106.63 Aligned_cols=55 Identities=24% Similarity=0.199 Sum_probs=53.4
Q ss_pred EEEEeecCCCCCCHHHHHHHHHhCCCCcCcEEEEeCChhhHHHHHhccCeEEEec
Q 025547 93 LFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGY 147 (251)
Q Consensus 93 ~~ViRirg~~~~~~~~~k~L~~LrL~ki~~~Vfv~~n~~~~~mL~~V~pyV~~G~ 147 (251)
+-|+++||.+|.++++++||++|||+++|++|++++||+++|||++|+|||.|+|
T Consensus 2 ikItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGmi~kVkhLV~veE 56 (56)
T d2gycx1 2 IKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE 56 (56)
T ss_dssp EEEEECSCSSSCCTTHHHHHHHHTCCSTTCEEEECCCTTHHHHHHHTTTTEECCC
T ss_pred EEEEEecCCCCCCHHHHHHHHHhCCCCCCCEEEeCCCHHHHHHHHhhhheeEEeC
Confidence 5799999999999999999999999999999999999999999999999999986
No 3
>d1bxya_ d.59.1.1 (A:) Prokaryotic ribosomal protein L30 {Thermus thermophilus [TaxId: 274]}
Probab=99.58 E-value=1.9e-15 Score=106.09 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=55.0
Q ss_pred EEEEeecCCCCCCHHHHHHHHHhCCCCcCcEEEEeCChhhHHHHHhccCeEEEecCC
Q 025547 93 LFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPN 149 (251)
Q Consensus 93 ~~ViRirg~~~~~~~~~k~L~~LrL~ki~~~Vfv~~n~~~~~mL~~V~pyV~~G~p~ 149 (251)
+.|+++||.+|.++++++||++|||+++|++|++++||+++|||++|+|||.|++.+
T Consensus 4 lkIt~vrS~iG~~~~~k~tl~~LGL~k~~~~v~~~~tp~i~Gmi~kVkhLV~Veev~ 60 (60)
T d1bxya_ 4 LKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEVVE 60 (60)
T ss_dssp EEEEECSCCTTCCHHHHHHHHHHTCCSTTCEEEEECCHHHHHHHHHTTTTEEEEEEC
T ss_pred EEEEEecCCCCCCHHHHHHHHHcCCCCCCCEEEeCCCHHHHHHHHhhhheeEEEEcC
Confidence 689999999999999999999999999999999999999999999999999999864
No 4
>d2zjrw1 d.59.1.1 (W:1-55) Prokaryotic ribosomal protein L30 {Deinococcus radiodurans [TaxId: 1299]}
Probab=99.44 E-value=3.3e-14 Score=97.99 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=51.8
Q ss_pred EEEeecCCCCCCHHHHHHHHHhCCCCcCcEEEEeCChhhHHHHHhccCeEEEec
Q 025547 94 FIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGY 147 (251)
Q Consensus 94 ~ViRirg~~~~~~~~~k~L~~LrL~ki~~~Vfv~~n~~~~~mL~~V~pyV~~G~ 147 (251)
-|+++||.+|.++++++||+.|||+++|++|++++||+++|||++|+|+|.+.+
T Consensus 2 kItlvrS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGmi~kV~hLV~VeE 55 (55)
T d2zjrw1 2 KIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE 55 (55)
T ss_dssp EEEBCSCSTTSCHHHHHHHHHTTCCSTTCEEECCCSHHHHHHHHHTGGGBCCCC
T ss_pred eEEEEcCCCCCCHHHHHHHHHhCCCCCCCEEEeCCCHHHHHHHHhhhheEEEeC
Confidence 589999999999999999999999999999999999999999999999998764
No 5
>d1y88a2 c.52.1.30 (A:3-127) Hypothetical protein AF1548, N-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=28.07 E-value=8.2 Score=27.74 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=32.3
Q ss_pred cCcEEEEeCChhhHHHHHhcc----CeEEEecCChHHHHHHHHHhc
Q 025547 120 IFSGVFVRANDGMLEVLQKVE----PYVTYGYPNLANVKELIYKKG 161 (251)
Q Consensus 120 i~~~Vfv~~n~~~~~mL~~V~----pyV~~G~p~~~tv~~Li~KRG 161 (251)
...++|+-.+.=+.+-....+ +++.|-+|+...+.+||.+.|
T Consensus 79 ~~~~iiVTt~~Ft~~A~~~A~~~~i~Li~wd~p~~~~L~~li~~~~ 124 (125)
T d1y88a2 79 FTQPWIFTNTKFSEEAKKYAGCVGIKLTGWSYPEKEGIEVLLESKG 124 (125)
T ss_dssp CSEEEEECSSEECHHHHHHHHHHTCEEECSSCSTTTSHHHHHHTTT
T ss_pred CCeEEEEECCCCCHHHHHHHHHCCCEEEecCCCCcHHHHHHHHHcC
Confidence 346888877655555554444 679999999999999999877
No 6
>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.39 E-value=18 Score=25.57 Aligned_cols=19 Identities=16% Similarity=0.450 Sum_probs=10.2
Q ss_pred CcccHHHHHHHHHhcCCCh
Q 025547 186 GIICIEDIVHEIANVGPHF 204 (251)
Q Consensus 186 gi~ciEDlv~eI~~~g~~f 204 (251)
|.|+++||..-+.+.|.++
T Consensus 96 G~I~~~el~~~l~~~g~~l 114 (146)
T d1m45a_ 96 GKVSVGDLRYMLTGLGEKL 114 (146)
T ss_dssp SEEEHHHHHHHHHHSTTCC
T ss_pred cccchhhhhhhhcccCCcc
Confidence 5555555555555555443
No 7
>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=22.52 E-value=29 Score=24.59 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=6.3
Q ss_pred CcccHHHHHHHHH
Q 025547 186 GIICIEDIVHEIA 198 (251)
Q Consensus 186 gi~ciEDlv~eI~ 198 (251)
|.++.+++++.|.
T Consensus 135 G~I~y~eF~~~~~ 147 (152)
T d1wdcc_ 135 GNVKYEDFVKKVM 147 (152)
T ss_dssp SEEEHHHHHHHHH
T ss_pred CEEEHHHHHHHHh
Confidence 4455555555443
No 8
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.51 E-value=71 Score=23.31 Aligned_cols=43 Identities=7% Similarity=0.101 Sum_probs=34.8
Q ss_pred cCcEEEEeCChhhHHHHHhccC---e-EEEecCChHHHHHHHHHhcc
Q 025547 120 IFSGVFVRANDGMLEVLQKVEP---Y-VTYGYPNLANVKELIYKKGY 162 (251)
Q Consensus 120 i~~~Vfv~~n~~~~~mL~~V~p---y-V~~G~p~~~tv~~Li~KRG~ 162 (251)
-+..+++..++.....|+...+ + |.+-.|+.+++++-+.+||.
T Consensus 91 ~g~~~i~~~~~~~~~~lk~~~~~~~~~i~~~~~~~e~l~~RL~~Rg~ 137 (186)
T d1gkya_ 91 SGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT 137 (186)
T ss_dssp HTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHSC
T ss_pred CCCeEEecchHHHHHHHHHhhcccceEEEecCCcHHHHHHHHHhhcc
Confidence 3557778888888888887644 3 77899999999999999986
No 9
>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.65 E-value=91 Score=22.04 Aligned_cols=54 Identities=7% Similarity=0.070 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHhCCCCcCcEEEEeCChhhHHHHHhccC---eEEEecCChHHHHHHHH
Q 025547 103 DMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEP---YVTYGYPNLANVKELIY 158 (251)
Q Consensus 103 ~~~~~~~k~L~~LrL~ki~~~Vfv~~n~~~~~mL~~V~p---yV~~G~p~~~tv~~Li~ 158 (251)
.-|.....+++.+++ ...+++|+-|++.-...-+.+-= +|.||+ +.+.+.+-+.
T Consensus 99 p~~~~~~~~~~~~~~-~~~~~l~igD~~~di~aA~~aG~~~i~v~~G~-~~~~~~~~l~ 155 (164)
T d1u7pa_ 99 SKVTHFERLHHKTGV-PFSQMVFFDDENRNIIDVGRLGVTCIHIRDGM-SLQTLTQGLE 155 (164)
T ss_dssp CHHHHHHHHHHHHCC-CGGGEEEEESCHHHHHHHHTTTCEEEECSSCC-CHHHHHHHHH
T ss_pred CChHHHHHHHHHhCC-ChHHEEEEcCCHHHHHHHHHcCCEEEEECCCC-ChHHHHHHHH
Confidence 334456778888887 45899999999887776666532 566775 6776666543
No 10
>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=17.62 E-value=20 Score=29.22 Aligned_cols=19 Identities=26% Similarity=0.578 Sum_probs=16.4
Q ss_pred CeEEEecCChHHHHHHHHH
Q 025547 141 PYVTYGYPNLANVKELIYK 159 (251)
Q Consensus 141 pyV~~G~p~~~tv~~Li~K 159 (251)
||+|-|+||+++-.+++..
T Consensus 9 ~y~taG~P~~~~s~~~l~~ 27 (248)
T d1geqa_ 9 PYLTAGDPDKQSTLNFLLA 27 (248)
T ss_dssp EEEETTSSCHHHHHHHHHH
T ss_pred EEEcCcCCCHHHHHHHHHH
Confidence 7999999999988887754
Done!