BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025548
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 136 bits (343), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 119/224 (53%), Gaps = 11/224 (4%)
Query: 21 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNIS 80
RA AEF +TL +VF G G+ + + A P +IS
Sbjct: 11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHIS 63
Query: 81 GGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSS--- 137
G HVNPAVTF VG +SLLR I Y +AQLLG+ +L VT AL++
Sbjct: 64 GAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 123
Query: 138 GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGAS 197
GV A + EI +T V ++AT + + G LG++A +A+GF + L G + GA
Sbjct: 124 GVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAG 182
Query: 198 MNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQ 241
MNPA SF PA+++ ++ NHWVYWVGP+IG GL ++Y+F +
Sbjct: 183 MNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR 226
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 119/224 (53%), Gaps = 11/224 (4%)
Query: 21 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNIS 80
RA AEF ++L +VF G G+ + + A P +IS
Sbjct: 11 RAICAEFFASLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHIS 63
Query: 81 GGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSS--- 137
G HVNPAVTF VG +SLLR I Y +AQLLG+ +L VT AL++
Sbjct: 64 GAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 123
Query: 138 GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGAS 197
GV A + EI +T V ++AT + + G LG++A +A+GF + L G + GA
Sbjct: 124 GVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAG 182
Query: 198 MNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQ 241
MNPA SF PA+++ ++ NHWVYWVGP+IG GL ++Y+F +
Sbjct: 183 MNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR 226
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 119/224 (53%), Gaps = 11/224 (4%)
Query: 21 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNIS 80
RA AEF +TL +VF G G+ + + A P +IS
Sbjct: 7 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHIS 59
Query: 81 GGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSS--- 137
G HVNPAVTF VG +SLLR I Y +AQLLG+ +L VT AL++
Sbjct: 60 GAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 119
Query: 138 GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGAS 197
GV A + EI +T V ++AT + + G LG++A +A+GF + L G + GA
Sbjct: 120 GVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAG 178
Query: 198 MNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQ 241
MNPA SF PA+++ ++ NHWVYWVGP+IG GL ++Y+F +
Sbjct: 179 MNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR 222
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 119/224 (53%), Gaps = 11/224 (4%)
Query: 21 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNIS 80
RA AEF +TL +VF G G+ + + A P +IS
Sbjct: 5 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHIS 57
Query: 81 GGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSS--- 137
G HVNPAVTF VG +SLLR I Y +AQLLG+ +L VT AL++
Sbjct: 58 GAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 117
Query: 138 GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGAS 197
GV A + EI +T V ++AT + + G LG++A +A+GF + L G + GA
Sbjct: 118 GVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAG 176
Query: 198 MNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQ 241
MNPA SF PA+++ ++ NHWVYWVGP+IG GL ++Y+F +
Sbjct: 177 MNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR 220
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 119/227 (52%), Gaps = 4/227 (1%)
Query: 21 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNIS 80
RA +AEF++T +FVF GS + F N +IS
Sbjct: 12 RAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHIS 71
Query: 81 GGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFA---LSS 137
G H+NPAVT G + IS+ R ++Y IAQ +G+ VA +L +T+ T ++ L+
Sbjct: 72 GAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLAD 131
Query: 138 GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGAS 197
GV + + EI+ T LV V AT D ++ LG AP+AIG V L + G
Sbjct: 132 GVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCG 190
Query: 198 MNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHE 244
+NPA SFG A+++ ++ NHW++WVGP IGG LA ++Y+F +S +
Sbjct: 191 INPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFILAPRSSD 237
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 122/229 (53%), Gaps = 6/229 (2%)
Query: 21 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXX--XXXXXXXXXXXN 78
RA +AEF++ ++F+F GS + F+ + T + +
Sbjct: 12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGH 71
Query: 79 ISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAF---AL 135
ISG H+NPAVT G + IS+LR I+Y IAQ +G+ VA +L +T+ ++ AL
Sbjct: 72 ISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNAL 131
Query: 136 SSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDG 195
+ GV + + EI+ T LV V AT D ++ LG P+AIGF V L + G
Sbjct: 132 APGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSGPLAIGFSVALGHLLAIDYTG 190
Query: 196 ASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHE 244
+NPA SFG ++++ ++ +HW++WVGP IG LA ++Y+F +S +
Sbjct: 191 CGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRSSD 239
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 119/225 (52%), Gaps = 15/225 (6%)
Query: 21 RAALAEFISTLIFVFAGEGS----GMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXX 76
+A AEF++ LIFV GS G + N L P
Sbjct: 53 KAVTAEFLAMLIFVLLSVGSTINWGGSENPL-------PVDMVLISLCFGLSIATMVQCF 105
Query: 77 XNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALS 136
+ISGGH+NPAVT IS+ + + Y AQ LG+ + +L VT ++
Sbjct: 106 GHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVT 165
Query: 137 SGVG---AWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAF 193
+ G A + ++ E+++TF LV+T++A+ D + G++A +AIGF V L +
Sbjct: 166 TVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-LAIGFSVAIGHLFAINY 224
Query: 194 DGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 238
GASMNPA SFGPA++ +W+NHW+YWVGP+IG LAG +YE+ F
Sbjct: 225 TGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 269
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 119/225 (52%), Gaps = 15/225 (6%)
Query: 21 RAALAEFISTLIFVFAGEGS----GMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXX 76
+A AEF++ LIFV GS G + N L P
Sbjct: 14 KAVTAEFLAMLIFVLLSVGSTINWGGSENPL-------PVDMVLISLCFGLSIATMVQCF 66
Query: 77 XNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALS 136
+ISGGH+NPAVT IS+ + + Y AQ LG+ + +L VT ++
Sbjct: 67 GHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVT 126
Query: 137 S---GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAF 193
+ + A + ++ E+++TF LV+T++A+ D + G++A +AIGF V L +
Sbjct: 127 TVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-LAIGFSVAIGHLFAINY 185
Query: 194 DGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 238
GASMNPA SFGPA++ +W+NHW+YWVGP+IG LAG +YE+ F
Sbjct: 186 TGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 230
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 124 bits (311), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 118/225 (52%), Gaps = 15/225 (6%)
Query: 21 RAALAEFISTLIFVFAGEGS----GMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXX 76
+A AEF++ LIFV GS G + N L P
Sbjct: 14 KAVTAEFLAMLIFVLLSVGSTINWGGSENPL-------PVDMVLISLCFGLSIATMVQCF 66
Query: 77 XNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALS 136
+ISGGH+NPAVT IS+ + + Y AQ LG+ + +L VT ++
Sbjct: 67 GHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVT 126
Query: 137 S---GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAF 193
+ + A + ++ E+++TF LV+T++A+ + G++A +AIGF V L +
Sbjct: 127 TVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVA-LAIGFSVAIGHLFAINY 185
Query: 194 DGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 238
GASMNPA SFGPA++ +W+NHW+YWVGP+IG LAG +YE+ F
Sbjct: 186 TGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 230
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 7/221 (3%)
Query: 21 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNIS 80
+A AEF++ LIFV GS + + P +IS
Sbjct: 5 KAVTAEFLAMLIFVLLSLGSTINWGG---TEKPLPVDMVLISLCFGLSIATMVQCFGHIS 61
Query: 81 GGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALS---S 137
GGH+NPAVT IS+ + + Y AQ LG+ + +L VT ++
Sbjct: 62 GGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHG 121
Query: 138 GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGAS 197
+ A + ++ E+++TF LV+T++A+ + G+IA +AIGF V L + GAS
Sbjct: 122 NLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGAS 180
Query: 198 MNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 238
MNPA SFGPA++ +W+NHW+YWVGP+IG LAG +YE+ F
Sbjct: 181 MNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVF 221
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 119/227 (52%), Gaps = 14/227 (6%)
Query: 21 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNIS 80
RAA+AEFI+TL+F++ + + +K T + IS
Sbjct: 39 RAAIAEFIATLLFLYITVATVIGHSKETVVCGSV--GLLGIAWAFGGMIFVLVYCTAGIS 96
Query: 81 GGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTS----AFALS 136
GGH+NPAVTFG F+ +SLLR ++Y IAQ LG+ L+K G A +++
Sbjct: 97 GGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 156
Query: 137 SGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGA 192
G A+ EI+ TF LVYTV+ +A DPK+ + + +AP+ IGF V LA
Sbjct: 157 LGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 215
Query: 193 FDGASMNPAVSFGPALVSWS---WDNHWVYWVGPLIGGGLAGIVYEF 236
G +NPA SFG A++ S WD+ W++WVGP IG +A +++
Sbjct: 216 ITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQY 262
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 119/227 (52%), Gaps = 14/227 (6%)
Query: 21 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNIS 80
RAA+AEFI+TL+F++ + + +K T + IS
Sbjct: 62 RAAIAEFIATLLFLYITVATVIGHSKETVVCGSV--GLLGIAWAFGGMIFVLVYCTAGIS 119
Query: 81 GGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTS----AFALS 136
GGH+NPAVTFG F+ +SLLR ++Y IAQ LG+ L+K G A +++
Sbjct: 120 GGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 179
Query: 137 SGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGA 192
G A+ EI+ TF LVYTV+ +A DPK+ + + +AP+ IGF V LA
Sbjct: 180 LGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 238
Query: 193 FDGASMNPAVSFGPALVSWS---WDNHWVYWVGPLIGGGLAGIVYEF 236
G +NPA SFG A++ S WD+ W++WVGP IG +A +++
Sbjct: 239 ITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQY 285
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 119/227 (52%), Gaps = 14/227 (6%)
Query: 21 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNIS 80
RAA+AEFI+TL+F++ + + +K T + IS
Sbjct: 39 RAAIAEFIATLLFLYITVATVIGHSKETVVCGSV--GLLGIAWAFGGMIFVLVYCTAGIS 96
Query: 81 GGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTS----AFALS 136
GGH+NPAVTFG F+ +SLLR ++Y IAQ LG+ L+K G A +++
Sbjct: 97 GGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 156
Query: 137 SGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGA 192
G A+ EI+ TF LVYTV+ +A DPK+ + + +AP+ IGF V LA
Sbjct: 157 LGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 215
Query: 193 FDGASMNPAVSFGPALVSWS---WDNHWVYWVGPLIGGGLAGIVYEF 236
G +NPA SFG A++ S WD+ W++WVGP IG +A +++
Sbjct: 216 ITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQY 262
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 118/227 (51%), Gaps = 14/227 (6%)
Query: 21 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNIS 80
RAA+AEFI+TL+F++ + + +K T + IS
Sbjct: 62 RAAIAEFIATLLFLYITVATVIGHSKETVVCGSV--GLLGIAWAFGGMIFVLVYCTAGIS 119
Query: 81 GGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTS----AFALS 136
GGH+NPAVTFG F+ + LLR ++Y IAQ LG+ L+K G A +++
Sbjct: 120 GGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 179
Query: 137 SGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGA 192
G A+ EI+ TF LVYTV+ +A DPK+ + + +AP+ IGF V LA
Sbjct: 180 LGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 238
Query: 193 FDGASMNPAVSFGPALVSWS---WDNHWVYWVGPLIGGGLAGIVYEF 236
G +NPA SFG A++ S WD+ W++WVGP IG +A +++
Sbjct: 239 ITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQY 285
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 118/227 (51%), Gaps = 14/227 (6%)
Query: 21 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNIS 80
RAA+AEFI+TL+F++ + + +K T + IS
Sbjct: 58 RAAIAEFIATLLFLYITVATVIGHSKETVVCGSV--GLLGIAWAFGGMIFVLVYCTAGIS 115
Query: 81 GGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTS----AFALS 136
GGH+NPAVTFG F+ + LLR ++Y IAQ LG+ L+K G A +++
Sbjct: 116 GGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 175
Query: 137 SGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGA 192
G A+ EI+ TF LVYTV+ +A DPK+ + + +AP+ IGF V LA
Sbjct: 176 LGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 234
Query: 193 FDGASMNPAVSFGPALVSWS---WDNHWVYWVGPLIGGGLAGIVYEF 236
G +NPA SFG A++ S WD+ W++WVGP IG +A +++
Sbjct: 235 ITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQY 281
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 117/238 (49%), Gaps = 18/238 (7%)
Query: 12 REATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXX---X 68
+E L+A AEF++TLIFVF G GS + + PS
Sbjct: 4 KEVCSVAFLKAVFAEFLATLIFVFFGLGSALKW----------PSALPTILQIALAFGLA 53
Query: 69 XXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT--N 126
+SGGH+NPA+T VG ISLLR Y AQL+G+ +L V N
Sbjct: 54 IGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLN 113
Query: 127 GQ-TTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGA 185
+ + AL++ A+V E+++TF L ++A+ + +G+ A ++IG V
Sbjct: 114 ARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTSPVGSPA-LSIGLSVTL 172
Query: 186 NILAGGAFDGASMNPAVSFGPALVSWSWD-NHWVYWVGPLIGGGLAGIVYEFFFINQS 242
L G F G SMNPA SFGPA+V + HWV+WVGP++G LA I+Y + S
Sbjct: 173 GHLVGIYFTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPNS 230
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 106/243 (43%), Gaps = 31/243 (12%)
Query: 21 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXX------------- 67
+ +AEFI T I VF G GS A + +G +P+
Sbjct: 6 KRCIAEFIGTFILVFFGAGSA-AVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGF 64
Query: 68 XXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLL-LKFVTN 126
NISG H+NPAVT G + + Y IAQLLG+ + L+
Sbjct: 65 AIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGI 124
Query: 127 GQTT----SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPK--KGSLGTIAPIAIG 180
G T A A G+ W A++ E+V TF L+ T+ A+D + KG G I IG
Sbjct: 125 GAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKGFAGII----IG 180
Query: 181 FIVGANILAGGAFDGASMNPAVSFGPALVSWS------WDNHWVYWVGPLIGGGLAGIVY 234
V I G G+S+NPA +FGP L W+ + +Y +GP++G LA + Y
Sbjct: 181 LTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTY 240
Query: 235 EFF 237
++
Sbjct: 241 QYL 243
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 96/213 (45%), Gaps = 5/213 (2%)
Query: 26 EFISTLIFVFAGEGSGMAFNKL--THNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGH 83
EF+ T +F+++ N+ T +G + P+ +SGG+
Sbjct: 51 EFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGN 110
Query: 84 VNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWN 143
+NPAVT + I RGIL Q++ A +T G+ A AL G
Sbjct: 111 LNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIAFANALGGGASRTR 170
Query: 144 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVS 203
+ E T L TV A++ + + AP IG + L + GA +NPA S
Sbjct: 171 GLFLEAFGTAILCLTVLMLAVEKHRATW--FAPFVIGIALLIAHLICIYYTGAGLNPARS 228
Query: 204 FGPALVSWSWDN-HWVYWVGPLIGGGLAGIVYE 235
FGPA+ + S+ N HW+YW+GP++G LA +++
Sbjct: 229 FGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQ 261
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 96/236 (40%), Gaps = 26/236 (11%)
Query: 25 AEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXX-------------XXXXXXXXXXXXX 71
AE + T I VF G G+ + + NGA+ P+
Sbjct: 11 AEVVGTFILVFFGPGAAV-ITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALAIAA 69
Query: 72 XXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTS 131
ISG H+NPAVT + G + Y +AQ +G+ + LL +
Sbjct: 70 VIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAAT 129
Query: 132 AFALSS-----GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGAN 186
L + G+G A++ E + TF L+ + A+D + A + IG VG
Sbjct: 130 VGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAPP--GFAGLVIGLTVGGI 187
Query: 187 ILAGGAFDGASMNPAVSFGPAL-VSWSWDNHW----VYWVGPLIGGGLAGIVYEFF 237
I G G+S+NPA +FGP L S N W +Y +GP++G A +Y +
Sbjct: 188 ITTIGNITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAVAAAWLYNYL 243
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 76/158 (48%), Gaps = 19/158 (12%)
Query: 78 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQT-----TSA 132
+ISGGH NPAVT G + GG + Y IAQ++G VA LL + +G+T S
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASG 118
Query: 133 FALSSGVGA--------WNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVG 184
FA S+G G +A+V E+V++ G + ++ K + APIAIG +
Sbjct: 119 FA-SNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT---DKFAPAGFAPIAIGLALT 174
Query: 185 ANILAGGAFDGASMNPAVSFGPALVS--WSWDNHWVYW 220
L S+NPA S A+ W+ + W +W
Sbjct: 175 LIHLISIPVTNCSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 76/158 (48%), Gaps = 19/158 (12%)
Query: 78 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQT-----TSA 132
+ISGGH NPAVT G + GG + Y IAQ++G VA LL + +G+T S
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASG 118
Query: 133 FALSSGVGA--------WNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVG 184
FA S+G G +A+V E+V++ G + ++ K + APIAIG +
Sbjct: 119 FA-SNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT---DKFAPAGFAPIAIGLALT 174
Query: 185 ANILAGGAFDGASMNPAVSFGPALVS--WSWDNHWVYW 220
L S+NPA S A+ W+ + W +W
Sbjct: 175 LIHLISIPVTNCSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 76/158 (48%), Gaps = 19/158 (12%)
Query: 78 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQT-----TSA 132
+ISGGH NPAVT G + GG + Y IAQ++G VA LL + +G+T S
Sbjct: 56 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASG 115
Query: 133 FALSSGVGA--------WNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVG 184
FA S+G G +A+V E+V++ G + ++ K + APIAIG +
Sbjct: 116 FA-SNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT---DKFAPAGFAPIAIGLALT 171
Query: 185 ANILAGGAFDGASMNPAVSFGPALVS--WSWDNHWVYW 220
L S+NPA S A+ W+ + W +W
Sbjct: 172 LIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 209
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 19/158 (12%)
Query: 78 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQT-----TSA 132
+ISGGH NPAVT G + GG + Y IAQ++G VA LL + +G+T S
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASG 118
Query: 133 FALSSGVGA--------WNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVG 184
FA S+G G +A+V E+V++ G + ++ K + APIAIG
Sbjct: 119 FA-SNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT---DKFAPAGFAPIAIGLACT 174
Query: 185 ANILAGGAFDGASMNPAVSFGPALVS--WSWDNHWVYW 220
L S+NPA S A+ W+ + W +W
Sbjct: 175 LIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 76/158 (48%), Gaps = 19/158 (12%)
Query: 78 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQT-----TSA 132
+ISGGH NPAVT G + GG + Y IAQ++G VA LL + +G+T S
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASG 118
Query: 133 FALSSGVGA--------WNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVG 184
FA S+G G +A+V E+V++ G + ++ K + APIAIG +
Sbjct: 119 FA-SNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT---DKFAPAGFAPIAIGLALT 174
Query: 185 ANILAGGAFDGASMNPAVSFGPALVS--WSWDNHWVYW 220
L S+NPA S A+ W+ + W +W
Sbjct: 175 LIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 76/158 (48%), Gaps = 19/158 (12%)
Query: 78 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQT-----TSA 132
+ISGGH NPAVT G + GG + Y IAQ++G VA LL + +G+T S
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASG 118
Query: 133 FALSSGVGA--------WNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVG 184
FA S+G G +A+V E+V++ G + ++ K + APIAIG +
Sbjct: 119 FA-SNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT---DKFAPAGFAPIAIGLALT 174
Query: 185 ANILAGGAFDGASMNPAVSFGPALVS--WSWDNHWVYW 220
L S+NPA S A+ W+ + W +W
Sbjct: 175 LIGLISIPVTNFSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 76/158 (48%), Gaps = 19/158 (12%)
Query: 78 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQT-----TSA 132
+ISGGH NPAVT G + GG + Y IAQ++G VA LL + +G+T S
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASG 118
Query: 133 FALSSGVGA--------WNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVG 184
FA S+G G +A+V E+V++ G + ++ K + APIAIG +
Sbjct: 119 FA-SNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT---DKFAPAGFAPIAIGLALT 174
Query: 185 ANILAGGAFDGASMNPAVSFGPALVS--WSWDNHWVYW 220
L S+NPA S A+ W+ + W +W
Sbjct: 175 LIGLISIPVTNFSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 96/231 (41%), Gaps = 23/231 (9%)
Query: 21 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNIS 80
R LAEF T VF G GS + G IS
Sbjct: 31 RKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIG----FTGVALAFGLTVLTMAYAVGGIS 86
Query: 81 GGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQT---TSAFALSS 137
GGH NPAV+ G V G + Y IAQ+ G+ VA L + G+ FA S+
Sbjct: 87 GGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFA-SN 145
Query: 138 GVGAW--------NAVVFEIVMT-FGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANIL 188
G G +A++ EI++T F L+ + +T G APIAIG + L
Sbjct: 146 GYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRVPAG----FAPIAIGLALTLIHL 201
Query: 189 AGGAFDGASMNPAVSFGPALV--SWSWDNHWVYWVGPLIGGGLAGIVYEFF 237
S+NPA S G AL W+ W++W+ P++GG ++++ F
Sbjct: 202 ISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLF 252
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 80/200 (40%), Gaps = 30/200 (15%)
Query: 79 ISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK------FVTNGQT--- 129
+SG H+NPAVT ++ + I + ++Q+ G+ A L+ F QT
Sbjct: 62 VSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHI 121
Query: 130 ----TSAFALSSGVGAW--------NAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPI 177
+ L+ + A E+V+T L+ + A D G +AP+
Sbjct: 122 VRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPL 181
Query: 178 AIGFIVGANILAGGAFDGASMNPAVSFGPALVSW--SWDN-------HWVYWVGPLIGGG 228
IG ++ + G G +MNPA FGP + +W W N Y++ PL G
Sbjct: 182 LIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPI 241
Query: 229 LAGIVYEFFFINQSHEQLPT 248
+ IV F + LP
Sbjct: 242 VGAIVGAFAYRKLIGRHLPC 261
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 80/200 (40%), Gaps = 30/200 (15%)
Query: 79 ISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK------FVTNGQT--- 129
+SG H+NPAVT ++ + I + ++Q+ G+ A L+ F QT
Sbjct: 62 VSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHI 121
Query: 130 ----TSAFALSSGVGAW--------NAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPI 177
+ L+ + A E+V+T L+ + A D G +AP+
Sbjct: 122 VRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPL 181
Query: 178 AIGFIVGANILAGGAFDGASMNPAVSFGPALVSW--SWDN-------HWVYWVGPLIGGG 228
IG ++ + G G +MNPA FGP + +W W N Y++ PL G
Sbjct: 182 LIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPI 241
Query: 229 LAGIVYEFFFINQSHEQLPT 248
+ IV F + LP
Sbjct: 242 VGAIVGAFAYRKLIGRHLPC 261
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 102/243 (41%), Gaps = 30/243 (12%)
Query: 16 HPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXX 75
+ +R + EF+ T + +F GEG+ F+ +G
Sbjct: 6 YKSYVREFIGEFLGTFVLMFLGEGATANFHTTGLSGD-----WYKLCLGWGLAVFFGILV 60
Query: 76 XXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLG-----STVACLLLKFVTNGQTT 130
+SG H+N AV+ G L + +Y+ AQLLG STV L F++N +
Sbjct: 61 SAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIP 120
Query: 131 SAFALSS----GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGAN 186
FA + + A E+++T G++ V +D + G + + +VG
Sbjct: 121 Q-FAWETSRNPSISLTGAFFNELILT-GILLLVILVVVD--ENICGKFHILKLSSVVGLI 176
Query: 187 ILA----GGAFDGASMNPAVSFGP---ALVSWSWD----NHWVYWVGPLIGGGLAGIVYE 235
IL G G ++NP+ G +L+++ D +++ +WV PL+ + +V+
Sbjct: 177 ILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWV-PLVAPCVGSVVFC 235
Query: 236 FFF 238
F+
Sbjct: 236 QFY 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,365,062
Number of Sequences: 62578
Number of extensions: 286567
Number of successful extensions: 687
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 561
Number of HSP's gapped (non-prelim): 58
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)