Query 025548
Match_columns 251
No_of_seqs 179 out of 1402
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 12:33:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025548.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025548hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyz_A Aquaporin-4; water tran 100.0 1.6E-52 5.5E-57 369.0 22.9 226 13-242 45-273 (340)
2 3gd8_A Aquaporin-4; proton exc 100.0 1.8E-52 6.2E-57 353.2 21.7 220 17-240 1-223 (223)
3 2w2e_A AQY1, aquaporin, aquapo 100.0 6.6E-52 2.3E-56 359.7 24.5 232 17-250 42-276 (279)
4 2zz9_A Aquaporin-4; water tran 100.0 4.6E-52 1.6E-56 363.1 22.4 229 10-242 3-234 (301)
5 1j4n_A Aquaporin 1; membrane p 100.0 4.7E-52 1.6E-56 360.0 19.9 230 12-242 3-237 (271)
6 3d9s_A Aquaporin-5, AQP-5; aqu 100.0 1.6E-51 5.3E-56 355.4 21.3 224 12-243 4-231 (266)
7 2b6o_A Aquaporin-0, lens fiber 100.0 1E-50 3.5E-55 350.2 25.6 223 12-242 2-227 (263)
8 3cn5_A Aquaporin; membrane pro 100.0 1.8E-51 6E-56 360.2 17.3 228 11-241 52-290 (304)
9 3llq_A Aquaporin Z 2; aquapori 100.0 7.1E-50 2.4E-54 342.3 20.4 217 15-238 25-253 (256)
10 2o9g_A Aquaporin Z; integral m 100.0 1.5E-49 5.2E-54 337.8 21.7 215 19-240 4-232 (234)
11 1ldf_A Glycerol uptake facilit 100.0 1.2E-49 4.3E-54 346.8 21.3 221 16-242 4-259 (281)
12 2f2b_A Aquaporin AQPM; protein 100.0 4.5E-49 1.5E-53 337.5 22.7 220 18-239 3-245 (246)
13 3c02_A Aquaglyceroporin; membr 100.0 1.7E-49 5.9E-54 342.0 14.3 222 17-244 7-248 (258)
14 2f2b_A Aquaporin AQPM; protein 99.6 1.2E-15 4E-20 130.2 11.7 102 15-126 139-245 (246)
15 2b6o_A Aquaporin-0, lens fiber 99.6 4.8E-15 1.6E-19 127.5 8.4 102 140-242 8-112 (263)
16 3llq_A Aquaporin Z 2; aquapori 99.5 7.9E-14 2.7E-18 119.0 8.3 102 139-240 27-133 (256)
17 2zz9_A Aquaporin-4; water tran 99.4 2.7E-13 9.3E-18 118.2 9.7 102 140-241 11-118 (301)
18 3c02_A Aquaglyceroporin; membr 99.4 9.5E-14 3.2E-18 119.1 6.4 103 140-242 8-114 (258)
19 3d9s_A Aquaporin-5, AQP-5; aqu 99.4 9.2E-13 3.1E-17 113.3 11.6 102 16-127 126-228 (266)
20 2o9g_A Aquaporin Z; integral m 99.4 6.9E-13 2.4E-17 112.2 10.1 101 16-127 131-232 (234)
21 3cn5_A Aquaporin; membrane pro 99.4 2E-13 6.7E-18 119.3 6.4 102 140-241 59-167 (304)
22 1j4n_A Aquaporin 1; membrane p 99.4 4.2E-13 1.4E-17 115.8 7.8 101 140-240 9-120 (271)
23 3gd8_A Aquaporin-4; proton exc 99.4 1.3E-12 4.5E-17 109.6 10.7 100 16-125 122-221 (223)
24 1ldf_A Glycerol uptake facilit 99.4 2.2E-13 7.5E-18 118.2 5.8 102 140-241 6-111 (281)
25 2w2e_A AQY1, aquaporin, aquapo 99.4 1.6E-12 5.4E-17 112.5 10.4 101 16-126 165-265 (279)
26 3iyz_A Aquaporin-4; water tran 99.4 1.8E-12 6.1E-17 114.2 10.0 102 16-127 170-271 (340)
27 3kcu_A Probable formate transp 84.0 19 0.00064 30.5 14.3 101 58-162 68-182 (285)
28 3tds_E Formate/nitrite transpo 73.3 40 0.0014 28.2 14.4 102 55-161 61-176 (268)
29 3kly_A Putative formate transp 44.9 1.4E+02 0.0047 25.0 12.5 139 16-162 27-181 (280)
30 3s2u_A UDP-N-acetylglucosamine 41.8 6.2 0.00021 34.2 0.4 20 78-97 10-29 (365)
31 4fc4_A Nitrite transporter NIR 33.3 2.1E+02 0.007 23.7 14.9 62 58-124 58-122 (261)
No 1
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=100.00 E-value=1.6e-52 Score=368.96 Aligned_cols=226 Identities=35% Similarity=0.609 Sum_probs=195.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhcccccccchHHHHHH
Q 025548 13 EATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFGA 92 (251)
Q Consensus 13 ~~~~~~~~~~~~~Ef~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~~sGah~NPavtl~~ 92 (251)
+..+.+++|++++||+|||+|+|++++++++. . +.....+.+++.+++++|+++++++++++++||||+|||||+++
T Consensus 45 ~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~--~-~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal 121 (340)
T 3iyz_A 45 GVWTQAFWKAVTAEFLAMLIFVLLSVGSTINW--G-GSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAM 121 (340)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHhc--c-cCCCCCCcchHHHHHHHHHHHHHheeEeeccCcCeeChHHHHHH
Confidence 34456889999999999999999999998743 1 11222346788899999999999999999999999999999999
Q ss_pred HHhcCCcchhhHHHHHHHhHhHHHHHHHHHHHhcCCc---ccccccCCCCchHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 025548 93 FVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQT---TSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKG 169 (251)
Q Consensus 93 ~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~E~~~T~~lv~~v~~~~~~~~~~ 169 (251)
++.|+++|.+++.|+++|++||++|+.+++.++++.. ...+.+.+..+..++|+.|+++||+|+++++.+ .|+++.
T Consensus 122 ~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~~lg~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Ila~-~d~~~~ 200 (340)
T 3iyz_A 122 VCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFAS-CDDKRT 200 (340)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHh-hcCccC
Confidence 9999999999999999999999999999999986432 223455667889999999999999999999986 555443
Q ss_pred CCCchHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHcccCCCceeecchhhhHHHHHHHHHHHHHhhCCC
Q 025548 170 SLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQS 242 (251)
Q Consensus 170 ~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~~~~~~~~wvy~~~p~~Ga~la~~~~~~~~~~~~ 242 (251)
......|+.||+++.+....++++||++|||||||||+++.++|.++||||+||++|+++|+++|++++.++.
T Consensus 201 ~~~~~~pl~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~~w~~~WVywvgPiiGailaallY~~l~~p~~ 273 (340)
T 3iyz_A 201 DVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDV 273 (340)
T ss_pred CcccchhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHHhCCCh
Confidence 3345679999999998888888999999999999999999999999999999999999999999999987654
No 2
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.8e-52 Score=353.20 Aligned_cols=220 Identities=36% Similarity=0.630 Sum_probs=191.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHhc
Q 025548 17 PDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFGAFVGG 96 (251)
Q Consensus 17 ~~~~~~~~~Ef~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~~sGah~NPavtl~~~l~g 96 (251)
++++|++++||+||++|++++++++++.. ++.+....+++.+++++|+++++.+++++++||||+|||||+++++.|
T Consensus 1 ~~~~r~~~aEfiGT~~lv~~g~g~~~~~~---~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~g 77 (223)
T 3gd8_A 1 QAFWKAVTAEFLAMLIFVLLSLGSTINWG---GTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTR 77 (223)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTCCTT---TTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHcC
Confidence 36899999999999999999999887431 112224567889999999999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHHhHhHHHHHHHHHHHhcCCc---ccccccCCCCchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCc
Q 025548 97 NISLLRGILYWIAQLLGSTVACLLLKFVTNGQT---TSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT 173 (251)
Q Consensus 97 ~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~E~~~T~~lv~~v~~~~~~~~~~~~~~ 173 (251)
+++|++.+.|+++|++|+++|+.+++.++++.. ...+.+.++.+..++++.|+++|++|+++++.+ .|+++.....
T Consensus 78 ~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~-~~~~~~~~~~ 156 (223)
T 3gd8_A 78 KISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFAS-CDSKRTDVTG 156 (223)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-TCTTCSCCCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHH-hccccCCccC
Confidence 999999999999999999999999999886421 233456677899999999999999999999986 5555443445
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHcccCCCceeecchhhhHHHHHHHHHHHHHhhC
Q 025548 174 IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFIN 240 (251)
Q Consensus 174 ~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~~~~~~~~wvy~~~p~~Ga~la~~~~~~~~~~ 240 (251)
..|+.||+.+.+....+++.||++||||||||||++.++|+++|+||++|++|+++|+++|++++.|
T Consensus 157 ~~pl~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~~w~~~Wvy~vgP~~Ga~la~~~y~~~~~p 223 (223)
T 3gd8_A 157 SIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCP 223 (223)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CccHHHHHHHHHHHHhccCCccccccHHHHHHHHHHhcCCCcEEeehhHHHHHHHHHHHHHHHHcCC
Confidence 7899999999888888888999999999999999999999999999999999999999999998754
No 3
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=100.00 E-value=6.6e-52 Score=359.71 Aligned_cols=232 Identities=28% Similarity=0.461 Sum_probs=195.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hc-CCCCCCCCchHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHH
Q 025548 17 PDALRAALAEFISTLIFVFAGEGSGMAFNK-LT-HNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFGAFV 94 (251)
Q Consensus 17 ~~~~~~~~~Ef~gT~~lv~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~~sGah~NPavtl~~~l 94 (251)
++.+|++++||+|||+|+|+++++...... .. ++.+....+++.+++++|+++++.+++++++||||+|||||+++++
T Consensus 42 ~~~~r~~laEfiGT~~Lv~~g~g~~~~~~~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~~ 121 (279)
T 2w2e_A 42 RNHFIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVL 121 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCccHHHHHHHHHHHHHHHHHHHhhcCccccChHHHHHHHH
Confidence 478899999999999999999986432211 10 1111233467889999999999999999999999999999999999
Q ss_pred hcCCcchhhHHHHHHHhHhHHHHHHHHHHHhcCCcccccccCCCCchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCch
Q 025548 95 GGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTI 174 (251)
Q Consensus 95 ~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~lv~~v~~~~~~~~~~~~~~~ 174 (251)
.|+++|++.+.|+++|++|+++|+.+++.++++.......+.++.+..++++.|+++|++|+++++.++.++++ .+.+
T Consensus 122 ~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~~~t~~~~~~s~~~~~~~E~i~Tf~Lv~~Il~~~~~~~~--~~~~ 199 (279)
T 2w2e_A 122 ARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIAFANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHR--ATWF 199 (279)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCST--TGGG
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccceeeccCCccccHHHHHHHHHHHHHHHHHHHHHHccCCCC--CcCc
Confidence 99999999999999999999999999999997543323344556789999999999999999999987555443 3457
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHcccCC-CceeecchhhhHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 025548 175 APIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSW-DNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTE 250 (251)
Q Consensus 175 ~~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~~~~~-~~~wvy~~~p~~Ga~la~~~~~~~~~~~~~~~~~~~~ 250 (251)
.|+.||+++++..+.+++.||+++|||||||||++++.| .++|+||++|++|+++|+++|+++...+.++.+++||
T Consensus 200 ~pl~IGl~v~~~~l~~g~~TG~s~NPAR~~GPal~~~~~~~~~WVy~vgPiiGa~la~~ly~~l~~~~~~~~~p~~d 276 (279)
T 2w2e_A 200 APFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWLNYQTTNPGQD 276 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHTCCCTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCSCC---
T ss_pred HHHHHHHHHHHHHHhcccccccccChHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHccCCCcCCCCCC
Confidence 899999999999999999999999999999999998765 6899999999999999999999999888877776665
No 4
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=100.00 E-value=4.6e-52 Score=363.12 Aligned_cols=229 Identities=34% Similarity=0.608 Sum_probs=194.5
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhcccccccchHHH
Q 025548 10 HPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVT 89 (251)
Q Consensus 10 ~~~~~~~~~~~~~~~~Ef~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~~sGah~NPavt 89 (251)
..++..+.+++|++++||+|||+|+|++++++++... .......+++.+++++|+++++++++++++||||+|||||
T Consensus 3 ~~~~~~~~~~~r~~lAEflGT~lLv~~g~Gs~~~~~~---~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVT 79 (301)
T 2zz9_A 3 AFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGG---SENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVT 79 (301)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHTTSCCTTC---C-CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CCCCCCcchHHHHHHHHHHHHHhhheeccCCcceeChHHH
Confidence 4567788999999999999999999999998864331 1122355778899999999999999999999999999999
Q ss_pred HHHHHhcCCcchhhHHHHHHHhHhHHHHHHHHHHHhcCCcc---cccccCCCCchHHHHHHHHHHHHHHHHHHHhhccCC
Q 025548 90 FGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTT---SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDP 166 (251)
Q Consensus 90 l~~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~E~~~T~~lv~~v~~~~~~~ 166 (251)
+++++.|+++|++.+.|+++|++|+++|+.+++.++++... ..+.+.+..+..++++.|+++|++|+++++.+ .|+
T Consensus 80 la~~~~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Il~~-~d~ 158 (301)
T 2zz9_A 80 VAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFAS-CDD 158 (301)
T ss_dssp HHHHHTSSSCTTTTHHHHHHHHHHHHHHHHHHHTTSCSCGGGTSSCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-SCS
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCceeeecCCcccchHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence 99999999999999999999999999999999999875322 23345567789999999999999999999986 455
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHcccCCCceeecchhhhHHHHHHHHHHHHHhhCCC
Q 025548 167 KKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQS 242 (251)
Q Consensus 167 ~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~~~~~~~~wvy~~~p~~Ga~la~~~~~~~~~~~~ 242 (251)
++.......|+.||+++.+....+++.||+++||||+||||++.++|.++|+||++|++|+++|+++|++++.++.
T Consensus 159 ~~~~~~~~~pl~IGl~v~i~~~~g~~~TG~a~NPAR~~GPal~~~~w~~~WVy~vgPiiGailaa~ly~~l~~~~~ 234 (301)
T 2zz9_A 159 KRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDV 234 (301)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCTTTTHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred CCCCccchHhHHHHHHHHHHHHHhcCCcccccCcHHHHHHHHHhCCCcceeeeeeHHHHHHHHHHHHHHHHhCCch
Confidence 4433456789999999988888888999999999999999999999999999999999999999999999976543
No 5
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=100.00 E-value=4.7e-52 Score=359.96 Aligned_cols=230 Identities=35% Similarity=0.601 Sum_probs=197.1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc--CCCCCCCCchHHHHHHHHHHHHHHHHHHhcccccccchHHH
Q 025548 12 REATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLT--HNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVT 89 (251)
Q Consensus 12 ~~~~~~~~~~~~~~Ef~gT~~lv~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~~sGah~NPavt 89 (251)
+|.++++++|++++||+||++|+|+++++++...... +.......+++.+++++|+++++.+++++++||||+|||||
T Consensus 3 ~e~~~~~~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPAVT 82 (271)
T 1j4n_A 3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVT 82 (271)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHhcCCcceEcHHHH
Confidence 5677889999999999999999999999887543211 11111234578899999999999999999999999999999
Q ss_pred HHHHHhcCCcchhhHHHHHHHhHhHHHHHHHHHHHhcCCc---ccccccCCCCchHHHHHHHHHHHHHHHHHHHhhccCC
Q 025548 90 FGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQT---TSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDP 166 (251)
Q Consensus 90 l~~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~E~~~T~~lv~~v~~~~~~~ 166 (251)
+++++.|+++|++.+.|+++|++|+++|+.+++.++++.. ...+.+.++.+..++++.|+++|++|+++++.+ .|+
T Consensus 83 la~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~E~i~T~~Lv~~i~~~-~d~ 161 (271)
T 1j4n_A 83 LGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLAT-TDR 161 (271)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTCCTTCCCCCTTCCTTGGGHHHHHHHHHHHHHHHHH-TCS
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccCCCccchHHHHHHHHHHHHHHHHHHHhh-ccc
Confidence 9999999999999999999999999999999999986432 223345667788899999999999999999986 565
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHcccCCCceeecchhhhHHHHHHHHHHHHHhhCCC
Q 025548 167 KKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQS 242 (251)
Q Consensus 167 ~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~~~~~~~~wvy~~~p~~Ga~la~~~~~~~~~~~~ 242 (251)
++...+...|+.||+.+.+....+++.||+++||||||||++++++|+++|+||++|++|+++|+++|++++.++.
T Consensus 162 ~~~~~~~~~pl~IGl~v~~~~~~~~~~TG~a~NPAR~~Gpal~~~~~~~~wv~~vgP~~Ga~la~~~y~~~~~~~~ 237 (271)
T 1j4n_A 162 RRRDLGGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRS 237 (271)
T ss_dssp SCCCCCSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCS
T ss_pred cCCCccccHHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHhCCCcceeHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5443456789999999998888888899999999999999999999999999999999999999999999987644
No 6
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-51 Score=355.39 Aligned_cols=224 Identities=36% Similarity=0.602 Sum_probs=196.2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhcccccccchHHHHH
Q 025548 12 REATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFG 91 (251)
Q Consensus 12 ~~~~~~~~~~~~~~Ef~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~~sGah~NPavtl~ 91 (251)
+|..+++++|++++||+||++|+|++++++... .+...+++.+++++|+++++.+++++++||||+|||||++
T Consensus 4 ~e~~~~~~~r~~laEfiGT~~lv~~g~g~~~~~-------~~~~~~~l~ial~~Glav~~~i~~~g~iSGaHlNPAVTla 76 (266)
T 3d9s_A 4 KEVCSVAFLKAVFAEFLATLIFVFFGLGSALKW-------PSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLA 76 (266)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------SSSCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_pred hhhhChHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCCCccHHHHHHHHHHHHHHHHHHHcccCcceECHHHHHH
Confidence 356678899999999999999999999887521 1123567889999999999999999999999999999999
Q ss_pred HHHhcCCcchhhHHHHHHHhHhHHHHHHHHHHHhcCCc---ccccccCCCCchHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 025548 92 AFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQT---TSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKK 168 (251)
Q Consensus 92 ~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~E~~~T~~lv~~v~~~~~~~~~ 168 (251)
+++.|+++|++.+.|+++|++|+++|+.+++.++++.. ...+.+.++.+..++++.|+++|++|+++++.+ .|+++
T Consensus 77 ~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~g~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~-~d~~~ 155 (266)
T 3d9s_A 77 LLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFAS-TDSRR 155 (266)
T ss_dssp HHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-HCTTC
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccCceeeccCCccccHHHHHHHHHHHHHHHHHHHHHH-hcccC
Confidence 99999999999999999999999999999999986421 122345566789999999999999999999987 56555
Q ss_pred CCCCchHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHcccCCCc-eeecchhhhHHHHHHHHHHHHHhhCCCC
Q 025548 169 GSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDN-HWVYWVGPLIGGGLAGIVYEFFFINQSH 243 (251)
Q Consensus 169 ~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~~~~~~~-~wvy~~~p~~Ga~la~~~~~~~~~~~~~ 243 (251)
.......|+.||+++.+..+.++++||+++||||||||++++++|++ +|+||++|++|+++|+++|++++.++.+
T Consensus 156 ~~~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~~~~ 231 (266)
T 3d9s_A 156 TSPVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPNSL 231 (266)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHTCCCTTHHHHHHHHHHHHHHHHHHHHHTTSCCSC
T ss_pred CCccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHcCCcccCEeeeehHHHHHHHHHHHHHHHHhCCCch
Confidence 43456789999999999999999999999999999999999999998 9999999999999999999999876544
No 7
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=100.00 E-value=1e-50 Score=350.16 Aligned_cols=223 Identities=39% Similarity=0.654 Sum_probs=195.9
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhcccccccchHHHHH
Q 025548 12 REATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFG 91 (251)
Q Consensus 12 ~~~~~~~~~~~~~~Ef~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~~sGah~NPavtl~ 91 (251)
+|.++.+++|++++||+|||+|+++++++.... .+...+++.+++++|+++++.++.++++||||+|||||++
T Consensus 2 ~e~~~~~~~~~~laEfiGT~~Lv~~g~g~~~~~-------~~~~~~~l~i~l~~Gl~v~~~i~~~g~iSGahlNPAVTla 74 (263)
T 2b6o_A 2 WELRSASFWRAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFA 74 (263)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CSSSCHHHHHHHHHHHHHHHHHHHGGGTTCCCCSHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCCcchHHHHHHHHHHHHHHHHHhhccCcCeeChHHHHH
Confidence 466788999999999999999999999887521 1124567789999999999999999999999999999999
Q ss_pred HHHhcCCcchhhHHHHHHHhHhHHHHHHHHHHHhcCCc---ccccccCCCCchHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 025548 92 AFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQT---TSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKK 168 (251)
Q Consensus 92 ~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~E~~~T~~lv~~v~~~~~~~~~ 168 (251)
+++.|+++|.+.+.|+++|++|+++|+.+++.++++.. ...+.+.++.+..++++.|+++|++|+++++.+ .|+++
T Consensus 75 ~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~-~d~~~ 153 (263)
T 2b6o_A 75 FLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFAT-YDERR 153 (263)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCSSCSCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-SCTTS
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccCCccccHHHHHHHHHHHHHHHHHHHHHH-hcccC
Confidence 99999999999999999999999999999999987532 233456677889999999999999999999986 66554
Q ss_pred CCCCchHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHcccCCCceeecchhhhHHHHHHHHHHHHHhhCCC
Q 025548 169 GSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQS 242 (251)
Q Consensus 169 ~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~~~~~~~~wvy~~~p~~Ga~la~~~~~~~~~~~~ 242 (251)
.......|+.||+.+.+..+.++++||+++||||||||++++++|+++|+||++|++|+++|+++|++++.++.
T Consensus 154 ~~~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~~~ 227 (263)
T 2b6o_A 154 NGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRL 227 (263)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHTTTSTTCCCHHHHHHHHHHHTCCTTCTHHHHHHHHHHHHHHHHHHTTTSCCS
T ss_pred CCCcccHHHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHcCCccceeHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 43456789999999999999999999999999999999999999999999999999999999999999977654
No 8
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=100.00 E-value=1.8e-51 Score=360.19 Aligned_cols=228 Identities=38% Similarity=0.603 Sum_probs=194.7
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhcccccccchHHHH
Q 025548 11 PREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTF 90 (251)
Q Consensus 11 ~~~~~~~~~~~~~~~Ef~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~~sGah~NPavtl 90 (251)
.+|..+.+++|++++||+|||+|+|+++++++...... +.....+++.+++++|+++++++++++++||||+|||||+
T Consensus 52 ~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~--~~~~~~g~l~iala~Glav~~~v~~~g~iSGaHlNPAVTl 129 (304)
T 3cn5_A 52 LGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKET--VVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTF 129 (304)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--STTCSCHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEecccc--CCCCCCCceeehhhhhhhhheeeeEeeccCCCccCcHHHH
Confidence 36677789999999999999999999999887543222 1224567888999999999999999999999999999999
Q ss_pred HHHHhcCCcchhhHHHHHHHhHhHHHHHHHHHHHhcCC----cccccccCCCCchHHHHHHHHHHHHHHHHHHHhhccCC
Q 025548 91 GAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQ----TTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDP 166 (251)
Q Consensus 91 ~~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~E~~~T~~lv~~v~~~~~~~ 166 (251)
++++.|+++|++++.|+++|++|+++|+.+++.++++. ......+.++.+..++++.|+++|++|+++++.. .|+
T Consensus 130 a~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~TfiLv~~Il~~-~d~ 208 (304)
T 3cn5_A 130 GLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSA-TDP 208 (304)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTTTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-EEE
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcccccCCCccHHHHHHHHHHHHHHHHHHHhhe-ecC
Confidence 99999999999999999999999999999999998632 1112234567789999999999999999999964 664
Q ss_pred CCCCCCc----hHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHc---ccCCCceeecchhhhHHHHHHHHHHHHHhh
Q 025548 167 KKGSLGT----IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYEFFFI 239 (251)
Q Consensus 167 ~~~~~~~----~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~---~~~~~~~wvy~~~p~~Ga~la~~~~~~~~~ 239 (251)
++...+. +.|+.||++|++..+++++.||+++|||||||||++ +++|+++|+||++|++|+++|+++|++++.
T Consensus 209 ~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~~~w~~~WvywvgPiiGa~laa~~y~~l~~ 288 (304)
T 3cn5_A 209 KRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLR 288 (304)
T ss_dssp EEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCHHHHHHTTHHHHHHHHHHHHHHHHHHTTSC
T ss_pred ccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccCCCcCceEEEeehHHHHHHHHHHHHHHHhC
Confidence 4332222 789999999999999999999999999999999999 678999999999999999999999999976
Q ss_pred CC
Q 025548 240 NQ 241 (251)
Q Consensus 240 ~~ 241 (251)
++
T Consensus 289 ~~ 290 (304)
T 3cn5_A 289 AA 290 (304)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 9
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=7.1e-50 Score=342.27 Aligned_cols=217 Identities=28% Similarity=0.441 Sum_probs=184.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHH
Q 025548 15 THPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFGAFV 94 (251)
Q Consensus 15 ~~~~~~~~~~~Ef~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~~sGah~NPavtl~~~l 94 (251)
.+++++|++++||+||++|+++++++++..... ++...+++.+++++|+++++.+++++++||||+|||||+++++
T Consensus 25 ~~~~l~r~~laEflGT~lLv~~G~G~~~~~~~~----~~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTla~~~ 100 (256)
T 3llq_A 25 QSYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAF----PELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTV 100 (256)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHTTC----TTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CCCCccHHHHHHHHHHHHHHHHheeeccccceEchHHHHHHHH
Confidence 456789999999999999999999987633221 1235678899999999999999999999999999999999999
Q ss_pred hcCCcchhhHHHHHHHhHhHHHHHHHHHHHhcCCc---------ccccccCC-CCchHHHHHHHHHHHHHHHHHHHhhcc
Q 025548 95 GGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQT---------TSAFALSS-GVGAWNAVVFEIVMTFGLVYTVYATAL 164 (251)
Q Consensus 95 ~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~E~~~T~~lv~~v~~~~~ 164 (251)
.|+++|++.+.|+++|++|+++|+.+++.++++.. ...+.+.| ..+..++++.|+++|++|+++++.+ .
T Consensus 101 ~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~~~~~~~~~~~~~~t~p~~~s~~~~f~~E~i~Tf~Lv~~il~~-~ 179 (256)
T 3llq_A 101 AGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGS-T 179 (256)
T ss_dssp TTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTBTTCCCTTTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccccccCCcccCHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 99999999999999999999999999999885321 11122222 5688999999999999999999875 5
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHcccC--CCceeecchhhhHHHHHHHHHHHHHh
Q 025548 165 DPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWS--WDNHWVYWVGPLIGGGLAGIVYEFFF 238 (251)
Q Consensus 165 ~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~~~~--~~~~wvy~~~p~~Ga~la~~~~~~~~ 238 (251)
|+++ .+...|+.||+++.+..+..++.||+++|||||||||++.++ |+++|+||+||++|+++|+++|+++.
T Consensus 180 d~~~--~~~~~pl~IGl~v~~i~~~~g~~TG~a~NPAR~lGPal~~g~~~~~~~WVy~vgPi~Ga~la~~~y~~l~ 253 (256)
T 3llq_A 180 HGRV--PAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLFG 253 (256)
T ss_dssp STTS--CTTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCC--CccchhHHHHHHHHHHHHHhccccccccChHHHHHHHHHcCCCcccceeeeeeHHHHHHHHHHHHHHHhc
Confidence 6554 345789999999999999999999999999999999999764 56999999999999999999999883
No 10
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=100.00 E-value=1.5e-49 Score=337.77 Aligned_cols=215 Identities=30% Similarity=0.479 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHhcCC
Q 025548 19 ALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFGAFVGGNI 98 (251)
Q Consensus 19 ~~~~~~~Ef~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~~sGah~NPavtl~~~l~g~~ 98 (251)
++|++++||+||++|+|.+++++.... +.++...+++.+++++|+++++.+++++++||||+|||||+++++.|++
T Consensus 4 l~r~~~aEf~GT~~lv~~g~g~~~~~~----~~~~~~~~~l~ia~~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~g~~ 79 (234)
T 2o9g_A 4 MFRKLAAESFGTFWLVFGGSGSAVLAA----GFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRF 79 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT----TCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccc----CCCCCCcChHHHHHHHHHHHHHHHHHhhccCcceeCHHHHHHHHHhCCC
Confidence 689999999999999999998875321 1122345788899999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHhHhHHHHHHHHHHHhcCCc-----------ccccccCC-CCchHHHHHHHHHHHHHHHHHHHhhccCC
Q 025548 99 SLLRGILYWIAQLLGSTVACLLLKFVTNGQT-----------TSAFALSS-GVGAWNAVVFEIVMTFGLVYTVYATALDP 166 (251)
Q Consensus 99 ~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~-----------~~~~~~~~-~~~~~~~~~~E~~~T~~lv~~v~~~~~~~ 166 (251)
+|++.+.|+++|++|+++|+.+++.++++.. .....+.| +.+..++++.|+++|++|+++++.+ .|+
T Consensus 80 ~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~E~i~T~~Lv~~i~~~-~d~ 158 (234)
T 2o9g_A 80 PAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGA-TDK 158 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHCTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHH-TST
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccceeeecCCCccchHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence 9999999999999999999999999986431 01122222 5688999999999999999999986 565
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHcccC--CCceeecchhhhHHHHHHHHHHHHHhhC
Q 025548 167 KKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWS--WDNHWVYWVGPLIGGGLAGIVYEFFFIN 240 (251)
Q Consensus 167 ~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~~~~--~~~~wvy~~~p~~Ga~la~~~~~~~~~~ 240 (251)
|+ .+...|+.||+++.+..+..++.||+++|||||||||+++++ |+++|+||++|++|+++++++|++++.+
T Consensus 159 ~~--~~~~~pl~IGl~v~~~~~~~g~~TG~s~NPAR~lGPal~~g~~~~~~~Wv~~vgP~~Ga~la~~~y~~~~~~ 232 (234)
T 2o9g_A 159 FA--PAGFAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEK 232 (234)
T ss_dssp TS--CTTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCSHHHHSHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CC--ccchHHHHHHHHHHHHHHHccCCCccccChHHHHHHHHHhCCCCCceeeeeehHHhHHHHHHHHHHHHHcCC
Confidence 43 345789999999999999999999999999999999999775 4599999999999999999999998654
No 11
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=100.00 E-value=1.2e-49 Score=346.78 Aligned_cols=221 Identities=25% Similarity=0.398 Sum_probs=185.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHh
Q 025548 16 HPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFGAFVG 95 (251)
Q Consensus 16 ~~~~~~~~~~Ef~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~~sGah~NPavtl~~~l~ 95 (251)
+++++|++++||+|||+|+|+++++++... +.+ ...+.+.+++++|+++++.+++++++||||+|||||+++++.
T Consensus 4 ~~~~~~~~laEflGT~~Lv~~G~g~~~~~~-l~~----~~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~ 78 (281)
T 1ldf_A 4 TSTLKGQCIAEFLGTGLLIFFGVGCVAALK-VAG----ASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLF 78 (281)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSC----CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccC----CCCchHHHHHHHHHHHHHHhheecccCcCeeChHHHHHHHHc
Confidence 456899999999999999999998876433 322 123455689999999999999999999999999999999999
Q ss_pred cCCcchhhHHHHHHHhHhHHHHHHHHHHHhcCCc-------------------ccccc--cCCCCchHHHHHHHHHHHHH
Q 025548 96 GNISLLRGILYWIAQLLGSTVACLLLKFVTNGQT-------------------TSAFA--LSSGVGAWNAVVFEIVMTFG 154 (251)
Q Consensus 96 g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~-------------------~~~~~--~~~~~~~~~~~~~E~~~T~~ 154 (251)
|+++|++.+.|+++|++|+++|+.+++.++++.. ...+. |.++.+..++++.|+++|++
T Consensus 79 g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~t~p~~~~s~~~~~~~E~i~Tf~ 158 (281)
T 1ldf_A 79 ACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAI 158 (281)
T ss_dssp SCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccceeeccCCccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999885310 01222 34457899999999999999
Q ss_pred HHHHHHhhccCCCCCC-CCchHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHccc-------CC------Cceeecc
Q 025548 155 LVYTVYATALDPKKGS-LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSW-------SW------DNHWVYW 220 (251)
Q Consensus 155 lv~~v~~~~~~~~~~~-~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~~~-------~~------~~~wvy~ 220 (251)
|+++++.+ .|+++.. .+.+.|+.||+++.+..+..++.||+++|||||||||+++. .| .++||||
T Consensus 159 Lv~~il~~-~d~~~~~~~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~g~g~~~~~~~~~~~~~WVy~ 237 (281)
T 1ldf_A 159 LMGLILAL-TDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPL 237 (281)
T ss_dssp HHHHHHHH-HCTTSSSCCGGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHH
T ss_pred HHHHHHHH-hccCCCCcccchHHHHHHHHHHHHHHhcccccccccCcHhhHHHHHHHHhcccccccccccCCCceeeHHh
Confidence 99999986 5555432 34689999999999999999999999999999999999851 22 2799999
Q ss_pred hhhhHHHHHHHHHHHHHhhCCC
Q 025548 221 VGPLIGGGLAGIVYEFFFINQS 242 (251)
Q Consensus 221 ~~p~~Ga~la~~~~~~~~~~~~ 242 (251)
++|++|+++|+++|++++.++.
T Consensus 238 vgPi~Ga~la~~~y~~l~~~~~ 259 (281)
T 1ldf_A 238 FGPIVGAIVGAFAYRKLIGRHL 259 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHHHhCccC
Confidence 9999999999999999986554
No 12
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=100.00 E-value=4.5e-49 Score=337.47 Aligned_cols=220 Identities=32% Similarity=0.488 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCC--------CC----CCCchHHHHHHHHHHHHHHHHHHhcccccccc
Q 025548 18 DALRAALAEFISTLIFVFAGEGSGMAFNKLTHNG--------AN----TPSGLVAASVAHAFALFVAVAVGANISGGHVN 85 (251)
Q Consensus 18 ~~~~~~~~Ef~gT~~lv~~~~~~~~~~~~~~~~~--------~~----~~~~~~~~~l~~g~~~~~~i~~~~~~sGah~N 85 (251)
+++|++++||+||++|+|+++++++....+.+++ +. ...+++.+++++|+++++.+++++++||||+|
T Consensus 3 ~~~~~~~aEfiGT~~lv~~g~g~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaH~N 82 (246)
T 2f2b_A 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHIN 82 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSTTCCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccccccccchhHHHHHHHHHHHHHhheecccccceeC
Confidence 5789999999999999999999887654333211 00 22345678999999999999999999999999
Q ss_pred hHHHHHHHHhcCCcchhhHHHHHHHhHhHHHHHHHHHHHhcCCc---ccccc--cCCCCchHHHHHHHHHHHHHHHHHHH
Q 025548 86 PAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQT---TSAFA--LSSGVGAWNAVVFEIVMTFGLVYTVY 160 (251)
Q Consensus 86 Pavtl~~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~E~~~T~~lv~~v~ 160 (251)
||||+++++.|+++|++.+.|+++|++|+++|+.+++.+++++. ...+. |.++.+..++++.|+++|++|+++++
T Consensus 83 PAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~~E~i~Tf~Lv~~i~ 162 (246)
T 2f2b_A 83 PAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIM 162 (246)
T ss_dssp HHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHCTHHHHTTGGGCCCCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhcceeeeccCccccchHHHHHHHHHHHHHHHheee
Confidence 99999999999999999999999999999999999999997621 22233 33567899999999999999999999
Q ss_pred hhccCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHc------ccCCCceeecchhhhHHHHHHHHHH
Q 025548 161 ATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV------SWSWDNHWVYWVGPLIGGGLAGIVY 234 (251)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~------~~~~~~~wvy~~~p~~Ga~la~~~~ 234 (251)
.+..|+++. ....|+.+|+++.+.++..++.||+++||||||+|+++ +++|++.|+||++|++|+++|+++|
T Consensus 163 ~~~~~~~~~--~~~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp~l~~~~~g~~~~w~~~~vy~vap~~Ga~laa~~y 240 (246)
T 2f2b_A 163 GIAVDERAP--KGFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTY 240 (246)
T ss_dssp HHTTSTTSC--TTCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCGGGTTHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCC--CceeeHHHHHHHHHHHhcccccCCCccCHHHHHHHHHHHHHcCCCCCcceEEEeeeHHHHHHHHHHHHH
Confidence 865555542 45789999999999999999999999999999999993 3478889999999999999999999
Q ss_pred HHHhh
Q 025548 235 EFFFI 239 (251)
Q Consensus 235 ~~~~~ 239 (251)
++++.
T Consensus 241 ~~l~~ 245 (246)
T 2f2b_A 241 QYLTS 245 (246)
T ss_dssp HHHTC
T ss_pred HHHcC
Confidence 98864
No 13
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=100.00 E-value=1.7e-49 Score=341.97 Aligned_cols=222 Identities=22% Similarity=0.341 Sum_probs=185.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHhc
Q 025548 17 PDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFGAFVGG 96 (251)
Q Consensus 17 ~~~~~~~~~Ef~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~~sGah~NPavtl~~~l~g 96 (251)
++++|++++||+||++|+|+++++..+.. ..+ ...+++.+++++|+++++.+++++++||||+|||||++.++.|
T Consensus 7 ~~~~~~~~aEflGT~~lv~~G~g~~~~~~-~~~----~~~~~l~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g 81 (258)
T 3c02_A 7 KSYVREFIGEFLGTFVLMFLGEGATANFH-TTG----LSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSIN 81 (258)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSS----STTCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCC----CCccHHHHHHHHHHHHHHHHheecccCcCeeChHHHHHHHHhC
Confidence 46889999999999999999999876433 111 1456788999999999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHHhHhHHHHHHHHHHHhcCCcc----c----ccccCCCCchHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 025548 97 NISLLRGILYWIAQLLGSTVACLLLKFVTNGQTT----S----AFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKK 168 (251)
Q Consensus 97 ~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~E~~~T~~lv~~v~~~~~~~~~ 168 (251)
+++|++.+.|+++|++|+++|+.+++.++++... . ........+..++++.|+++|++|+++++.+ .|+|+
T Consensus 82 ~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~E~i~Tf~Lv~~i~~~-~d~~~ 160 (258)
T 3c02_A 82 KFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVV-VDENI 160 (258)
T ss_dssp SSCGGGHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTCSCTTCSSCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-HCHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHHH-hCccc
Confidence 9999999999999999999999999999853110 0 0111123445679999999999999999986 45543
Q ss_pred C-CCCchH-HHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHccc------CC----CceeecchhhhHHHHHHHHHHHH
Q 025548 169 G-SLGTIA-PIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSW------SW----DNHWVYWVGPLIGGGLAGIVYEF 236 (251)
Q Consensus 169 ~-~~~~~~-~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~~~------~~----~~~wvy~~~p~~Ga~la~~~~~~ 236 (251)
+ ..+... |+.||+++.+..+..++.||+++|||||||||++++ +| +++|+||++|++|+++|+++|++
T Consensus 161 ~~~~~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~g~~~~~~~~~y~Wv~~vgP~~Ga~la~~~y~~ 240 (258)
T 3c02_A 161 CGKFHILKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDK 240 (258)
T ss_dssp HCSCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHHhccCccCCCcChHHHHHHHHHHhccccccccccCCceeehHHHHHHHHHHHHHHHHHH
Confidence 2 234577 999999999999999999999999999999999862 34 67999999999999999999999
Q ss_pred HhhCCCCC
Q 025548 237 FFINQSHE 244 (251)
Q Consensus 237 ~~~~~~~~ 244 (251)
++.++.++
T Consensus 241 ~~~~~~~~ 248 (258)
T 3c02_A 241 VICPLVDL 248 (258)
T ss_dssp THHHHHHH
T ss_pred HhcccCCC
Confidence 98765443
No 14
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=99.64 E-value=1.2e-15 Score=130.21 Aligned_cols=102 Identities=25% Similarity=0.365 Sum_probs=84.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHH
Q 025548 15 THPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFGAFV 94 (251)
Q Consensus 15 ~~~~~~~~~~~Ef~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~~sGah~NPavtl~~~l 94 (251)
...+..+.++.|+++||+|++..+++....+ .+. ...++.+|+.+....+..+++||+|+|||+++++.+
T Consensus 139 ~~~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~--------~~~--~~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp~l 208 (246)
T 2f2b_A 139 PGISYWQAMLAEVVGTFLLMITIMGIAVDER--------APK--GFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYL 208 (246)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHTTSTT--------SCT--TCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHheeeEEecCCC--------CCC--ceeeHHHHHHHHHHHhcccccCCCccCHHHHHHHHH
Confidence 4567889999999999999999886543110 011 145889999999999999999999999999999998
Q ss_pred -----hcCCcchhhHHHHHHHhHhHHHHHHHHHHHhc
Q 025548 95 -----GGNISLLRGILYWIAQLLGSTVACLLLKFVTN 126 (251)
Q Consensus 95 -----~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~ 126 (251)
.++..|.+.|+||++|++|+++|+++.+.+.+
T Consensus 209 ~~~~~g~~~~w~~~~vy~vap~~Ga~laa~~y~~l~~ 245 (246)
T 2f2b_A 209 NDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYLTS 245 (246)
T ss_dssp HHHHHHCCCCGGGTTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCcceEEEeeeHHHHHHHHHHHHHHHHcC
Confidence 34668899999999999999999999987764
No 15
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=99.56 E-value=4.8e-15 Score=127.45 Aligned_cols=102 Identities=25% Similarity=0.251 Sum_probs=86.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCc--hHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHccc-CCCce
Q 025548 140 GAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT--IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSW-SWDNH 216 (251)
Q Consensus 140 ~~~~~~~~E~~~T~~lv~~v~~~~~~~~~~~~~~--~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~~~-~~~~~ 216 (251)
+..+.++.|+++|++|++..++.....+.. ... ..++.+|+++.+.++..++.||+|+|||++++.++.++ .|.+.
T Consensus 8 ~~~~~~laEfiGT~~Lv~~g~g~~~~~~~~-~~~~l~i~l~~Gl~v~~~i~~~g~iSGahlNPAVTla~~~~g~~~~~~~ 86 (263)
T 2b6o_A 8 SFWRAIFAEFFATLFYVFFGLGASLRWAPG-PLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRA 86 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCSS-SCHHHHHHHHHHHHHHHHHHHGGGTTCCCCSHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHHHHHHHHHhhccCcCeeChHHHHHHHHhcCCCHHHH
Confidence 567889999999999999988865432221 222 35788899999999999999999999999999999876 78999
Q ss_pred eecchhhhHHHHHHHHHHHHHhhCCC
Q 025548 217 WVYWVGPLIGGGLAGIVYEFFFINQS 242 (251)
Q Consensus 217 wvy~~~p~~Ga~la~~~~~~~~~~~~ 242 (251)
|+|+++|++|+++|+.+.+.++.++.
T Consensus 87 ~~Yi~AQ~lGa~~ga~l~~~~~~~~~ 112 (263)
T 2b6o_A 87 ICYVVAQLLGAVAGAAVLYSVTPPAV 112 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccc
Confidence 99999999999999999999986643
No 16
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=99.47 E-value=7.9e-14 Score=119.05 Aligned_cols=102 Identities=21% Similarity=0.154 Sum_probs=83.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhccC-CC-CCCCCc--hHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHccc-CC
Q 025548 139 VGAWNAVVFEIVMTFGLVYTVYATALD-PK-KGSLGT--IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSW-SW 213 (251)
Q Consensus 139 ~~~~~~~~~E~~~T~~lv~~v~~~~~~-~~-~~~~~~--~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~~~-~~ 213 (251)
.+..+.++.|+++|++|++..++.... .. +..... ...+.+|++|.+.+++.+++||+++|||++++.++.++ .|
T Consensus 27 ~~l~r~~laEflGT~lLv~~G~G~~~~~~~~~~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~ 106 (256)
T 3llq_A 27 YVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRFPA 106 (256)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHheeeccccceEchHHHHHHHHhcCCCH
Confidence 356889999999999999987765321 11 111111 34678899999999999999999999999999999877 79
Q ss_pred CceeecchhhhHHHHHHHHHHHHHhhC
Q 025548 214 DNHWVYWVGPLIGGGLAGIVYEFFFIN 240 (251)
Q Consensus 214 ~~~wvy~~~p~~Ga~la~~~~~~~~~~ 240 (251)
.+...|+++|++|+++|+.+.+.++.+
T Consensus 107 ~~~~~YiiAQ~lGA~~ga~lv~~~~~~ 133 (256)
T 3llq_A 107 SSLVPYVIAQVAGAIVAAAALYVIATG 133 (256)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999988753
No 17
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=99.44 E-value=2.7e-13 Score=118.23 Aligned_cols=102 Identities=15% Similarity=0.198 Sum_probs=85.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhccCCCCC---CCCc--hHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHccc-CC
Q 025548 140 GAWNAVVFEIVMTFGLVYTVYATALDPKKG---SLGT--IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSW-SW 213 (251)
Q Consensus 140 ~~~~~~~~E~~~T~~lv~~v~~~~~~~~~~---~~~~--~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~~~-~~ 213 (251)
+.++.++.|+++|++|++..++........ .... ...+.+|+++.+.+++.+++||+|+|||.+++..+.++ .|
T Consensus 11 ~~~r~~lAEflGT~lLv~~g~Gs~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~~~g~~~~ 90 (301)
T 2zz9_A 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISI 90 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCTTCC-CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHHHHTSSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHhhheeccCCcceeChHHHHHHHHhcCCCH
Confidence 578999999999999999887754432111 1112 35788899999999999999999999999999999877 79
Q ss_pred CceeecchhhhHHHHHHHHHHHHHhhCC
Q 025548 214 DNHWVYWVGPLIGGGLAGIVYEFFFINQ 241 (251)
Q Consensus 214 ~~~wvy~~~p~~Ga~la~~~~~~~~~~~ 241 (251)
.....|+++|++|+++|+.+.+.++.++
T Consensus 91 ~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~ 118 (301)
T 2zz9_A 91 AKSVFYITAQCLGAIIGAGILYLVTPPS 118 (301)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHTTSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999887654
No 18
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=99.44 E-value=9.5e-14 Score=119.12 Aligned_cols=103 Identities=19% Similarity=0.148 Sum_probs=84.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhccC--CCCCCCC-chHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHccc-CCCc
Q 025548 140 GAWNAVVFEIVMTFGLVYTVYATALD--PKKGSLG-TIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSW-SWDN 215 (251)
Q Consensus 140 ~~~~~~~~E~~~T~~lv~~v~~~~~~--~~~~~~~-~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~~~-~~~~ 215 (251)
+..+.++.|+++|++|++..++.... +.+...+ ....+.+|+++.+.+++.+++||+|+|||++++..+.++ +|.+
T Consensus 8 ~~~~~~~aEflGT~~lv~~G~g~~~~~~~~~~~~~~l~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~ 87 (258)
T 3c02_A 8 SYVREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSINKFDLKK 87 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHheecccCcCeeChHHHHHHHHhCCCcHHH
Confidence 56789999999999999986554321 1111111 135678899999999999999999999999999999877 8999
Q ss_pred eeecchhhhHHHHHHHHHHHHHhhCCC
Q 025548 216 HWVYWVGPLIGGGLAGIVYEFFFINQS 242 (251)
Q Consensus 216 ~wvy~~~p~~Ga~la~~~~~~~~~~~~ 242 (251)
...|+++|++|+++|+.+.+.++.++.
T Consensus 88 ~~~Yi~AQ~lGa~~ga~l~~~~~~~~~ 114 (258)
T 3c02_A 88 IPVYFFAQLLGAFVGTSTVYGLYHGFI 114 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchhh
Confidence 999999999999999999999987654
No 19
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=99.42 E-value=9.2e-13 Score=113.30 Aligned_cols=102 Identities=21% Similarity=0.370 Sum_probs=83.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHh
Q 025548 16 HPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFGAFVG 95 (251)
Q Consensus 16 ~~~~~~~~~~Ef~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~~sGah~NPavtl~~~l~ 95 (251)
..+..+.++.|+++||+|++..++... .+ +. ...+ ..++.+|+.+.+.....++.||+.+|||+++++.+.
T Consensus 126 ~~s~~~~~~~E~i~Tf~Lv~~il~~~d--~~---~~--~~~~--~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~ 196 (266)
T 3d9s_A 126 NTTQGQAMVVELILTFQLALCIFASTD--SR---RT--SPVG--SPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVV 196 (266)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHC--TT---CC--SCCC--CHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhc--cc---CC--Cccc--hHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 456789999999999999999876531 10 00 0111 357888888888888899999999999999999997
Q ss_pred cCCcchh-hHHHHHHHhHhHHHHHHHHHHHhcC
Q 025548 96 GNISLLR-GILYWIAQLLGSTVACLLLKFVTNG 127 (251)
Q Consensus 96 g~~~~~~-~~~yi~aQ~~Ga~~g~~~~~~~~~~ 127 (251)
.+ +|.+ .|+||++|++|+++|+++++.+..+
T Consensus 197 ~~-~~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~ 228 (266)
T 3d9s_A 197 MN-RFSPAHWVFWVGPIVGAVLAAILYFYLLFP 228 (266)
T ss_dssp HT-CCCTTHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cC-CcccCEeeeehHHHHHHHHHHHHHHHHhCC
Confidence 65 8888 9999999999999999999988753
No 20
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=99.41 E-value=6.9e-13 Score=112.17 Aligned_cols=101 Identities=18% Similarity=0.289 Sum_probs=83.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHh
Q 025548 16 HPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFGAFVG 95 (251)
Q Consensus 16 ~~~~~~~~~~Ef~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~~sGah~NPavtl~~~l~ 95 (251)
..+..+.++.|+++||+|++..++... .+ .+.+ ..++.+|+.+....+..++.||+.+|||+++++.+.
T Consensus 131 ~~~~~~~~~~E~i~T~~Lv~~i~~~~d--~~-------~~~~--~~pl~IGl~v~~~~~~~g~~TG~s~NPAR~lGPal~ 199 (234)
T 2o9g_A 131 GYSMLSALVVELVLSAGFLLVIHGATD--KF-------APAG--FAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIF 199 (234)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTS--TT-------SCTT--CHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhcC--CC-------Cccc--hHHHHHHHHHHHHHHHccCCCccccChHHHHHHHHH
Confidence 456889999999999999998875431 10 0111 458889999999999999999999999999999987
Q ss_pred c-CCcchhhHHHHHHHhHhHHHHHHHHHHHhcC
Q 025548 96 G-NISLLRGILYWIAQLLGSTVACLLLKFVTNG 127 (251)
Q Consensus 96 g-~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~ 127 (251)
. +..|.+.|+||++|++|+++|+++.+.++++
T Consensus 200 ~g~~~~~~~Wv~~vgP~~Ga~la~~~y~~~~~~ 232 (234)
T 2o9g_A 200 QGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEK 232 (234)
T ss_dssp HCSHHHHSHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred hCCCCCceeeeeehHHhHHHHHHHHHHHHHcCC
Confidence 4 4467799999999999999999999988754
No 21
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=99.41 E-value=2e-13 Score=119.34 Aligned_cols=102 Identities=21% Similarity=0.256 Sum_probs=83.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhccC---CCC-CCCCc--hHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHccc-C
Q 025548 140 GAWNAVVFEIVMTFGLVYTVYATALD---PKK-GSLGT--IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSW-S 212 (251)
Q Consensus 140 ~~~~~~~~E~~~T~~lv~~v~~~~~~---~~~-~~~~~--~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~~~-~ 212 (251)
+..+.++.|+++|++|++..++.... .+. ..... ...+.+|+++++.+++.+++||+|+|||++++..+.++ .
T Consensus 59 ~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~l~g~~~ 138 (304)
T 3cn5_A 59 SFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVE 138 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeehhhhhhhhheeeeEeeccCCCccCcHHHHHHHHhCCCC
Confidence 56789999999999999987654321 111 11111 34678899999999999999999999999999999877 7
Q ss_pred CCceeecchhhhHHHHHHHHHHHHHhhCC
Q 025548 213 WDNHWVYWVGPLIGGGLAGIVYEFFFINQ 241 (251)
Q Consensus 213 ~~~~wvy~~~p~~Ga~la~~~~~~~~~~~ 241 (251)
|.+...|+++|++|+++|+.+.+.++.++
T Consensus 139 ~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~ 167 (304)
T 3cn5_A 139 LLRALVYMIAQCLGAICGVGLVKAFMKGP 167 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 88999999999999999999999887654
No 22
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=99.40 E-value=4.2e-13 Score=115.83 Aligned_cols=101 Identities=23% Similarity=0.324 Sum_probs=82.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhccCC------CC--CCCC--chHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHc
Q 025548 140 GAWNAVVFEIVMTFGLVYTVYATALDP------KK--GSLG--TIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV 209 (251)
Q Consensus 140 ~~~~~~~~E~~~T~~lv~~v~~~~~~~------~~--~~~~--~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~ 209 (251)
+.++.++.|+++|++|++..++..... ++ .... ....+.+|+++.+.+++.+++||+|+|||++++..+.
T Consensus 9 ~~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~ 88 (271)
T 1j4n_A 9 LFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLS 88 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHhcCCcceEcHHHHHHHHHc
Confidence 467889999999999999876643211 11 1111 2357888999999999999999999999999999998
Q ss_pred cc-CCCceeecchhhhHHHHHHHHHHHHHhhC
Q 025548 210 SW-SWDNHWVYWVGPLIGGGLAGIVYEFFFIN 240 (251)
Q Consensus 210 ~~-~~~~~wvy~~~p~~Ga~la~~~~~~~~~~ 240 (251)
++ .|.+...|+++|++|+++|+.+.+.++.+
T Consensus 89 g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~ 120 (271)
T 1j4n_A 89 CQISVLRAIMYIIAQCVGAIVATAILSGITSS 120 (271)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 77 78899999999999999999999988754
No 23
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.3e-12 Score=109.65 Aligned_cols=100 Identities=26% Similarity=0.382 Sum_probs=79.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHh
Q 025548 16 HPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFGAFVG 95 (251)
Q Consensus 16 ~~~~~~~~~~Ef~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~~sGah~NPavtl~~~l~ 95 (251)
+.+..+.++.|+++||+|++..+..... + +. ...+ ..++.+|+.+.+.....++.||+.+|||+++++.+.
T Consensus 122 ~~s~~~~~~~E~i~Tf~Lv~~i~~~~~~--~---~~--~~~~--~~pl~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~ 192 (223)
T 3gd8_A 122 NLTAGHGLLVELIITFQLVFTIFASCDS--K---RT--DVTG--SIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVI 192 (223)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTCT--T---CS--CCCS--CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhcc--c---cC--CccC--CccHHHHHHHHHHHHhccCCccccccHHHHHHHHHH
Confidence 4467899999999999999988754321 0 00 1111 247788888777777777899999999999999998
Q ss_pred cCCcchhhHHHHHHHhHhHHHHHHHHHHHh
Q 025548 96 GNISLLRGILYWIAQLLGSTVACLLLKFVT 125 (251)
Q Consensus 96 g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~ 125 (251)
.+ .|.+.|+||+++++|+++|+++.+.++
T Consensus 193 ~~-~w~~~Wvy~vgP~~Ga~la~~~y~~~~ 221 (223)
T 3gd8_A 193 MG-NWENHWIYWVGPIIGAVLAGGLYEYVF 221 (223)
T ss_dssp HT-CCTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred hc-CCCcEEeehhHHHHHHHHHHHHHHHHc
Confidence 65 799999999999999999999998765
No 24
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=99.39 E-value=2.2e-13 Score=118.23 Aligned_cols=102 Identities=17% Similarity=0.090 Sum_probs=83.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhccC---CCCCCCCchHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHccc-CCCc
Q 025548 140 GAWNAVVFEIVMTFGLVYTVYATALD---PKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSW-SWDN 215 (251)
Q Consensus 140 ~~~~~~~~E~~~T~~lv~~v~~~~~~---~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~~~-~~~~ 215 (251)
+..+.++.|+++|++|++..+++... ++.........+.+|+++.+.+++.+++||+|+|||++++..+.++ +|.+
T Consensus 6 ~~~~~~laEflGT~~Lv~~G~g~~~~~~l~~~~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~ 85 (281)
T 1ldf_A 6 TLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRK 85 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhheecccCcCeeChHHHHHHHHcCCCCHHH
Confidence 56789999999999999976653221 1111111235788899999999999999999999999999999877 8999
Q ss_pred eeecchhhhHHHHHHHHHHHHHhhCC
Q 025548 216 HWVYWVGPLIGGGLAGIVYEFFFINQ 241 (251)
Q Consensus 216 ~wvy~~~p~~Ga~la~~~~~~~~~~~ 241 (251)
...|+++|++|+++|+.+.+.++.++
T Consensus 86 ~~~Yi~AQ~lGA~~ga~l~~~~~~~~ 111 (281)
T 1ldf_A 86 VIPFIVSQVAGAFCAAALVYGLYYNL 111 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999998888654
No 25
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=99.38 E-value=1.6e-12 Score=112.49 Aligned_cols=101 Identities=20% Similarity=0.242 Sum_probs=83.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHh
Q 025548 16 HPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFGAFVG 95 (251)
Q Consensus 16 ~~~~~~~~~~Ef~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~~sGah~NPavtl~~~l~ 95 (251)
..+..+.++.|+++||+|++..++..... . .. .-..++.+|+.+....+..++.||+.+|||+++++.+.
T Consensus 165 ~~s~~~~~~~E~i~Tf~Lv~~Il~~~~~~-----~---~~--~~~~pl~IGl~v~~~~l~~g~~TG~s~NPAR~~GPal~ 234 (279)
T 2w2e_A 165 GASRTRGLFLEAFGTAILCLTVLMLAVEK-----H---RA--TWFAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVA 234 (279)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHTTSC-----S---TT--GGGHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHccCC-----C---CC--cCcHHHHHHHHHHHHHHhcccccccccChHHHHHHHHH
Confidence 45678999999999999999987654211 0 01 11457889999999999999999999999999999998
Q ss_pred cCCcchhhHHHHHHHhHhHHHHHHHHHHHhc
Q 025548 96 GNISLLRGILYWIAQLLGSTVACLLLKFVTN 126 (251)
Q Consensus 96 g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~ 126 (251)
.+.-+...|+||++|++|+++|+++++.+..
T Consensus 235 ~~~~~~~~WVy~vgPiiGa~la~~ly~~l~~ 265 (279)
T 2w2e_A 235 ARSFPNYHWIYWLGPILGAFLAYSIWQMWKW 265 (279)
T ss_dssp HTCCCTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 7644457899999999999999999988864
No 26
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=99.37 E-value=1.8e-12 Score=114.25 Aligned_cols=102 Identities=25% Similarity=0.351 Sum_probs=81.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHh
Q 025548 16 HPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFGAFVG 95 (251)
Q Consensus 16 ~~~~~~~~~~Ef~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~~sGah~NPavtl~~~l~ 95 (251)
..+..+.++.|+++||+|++..++..... .. ...+ ..++.+|+.+.+.....++.||+.+|||+++++.+.
T Consensus 170 ~~s~~~~f~~E~i~Tf~Lv~~Ila~~d~~-----~~--~~~~--~~pl~IGl~v~i~~~~g~~~TG~amNPARdlGPal~ 240 (340)
T 3iyz_A 170 NLTAGHGLLVELIITFQLVFTIFASCDDK-----RT--DVTG--SVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVI 240 (340)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhcCc-----cC--Cccc--chhhHHHHHHHHHHHhccCCccccccHHHHHHHHHH
Confidence 45678999999999999999987653211 00 0111 347788888877777777999999999999999998
Q ss_pred cCCcchhhHHHHHHHhHhHHHHHHHHHHHhcC
Q 025548 96 GNISLLRGILYWIAQLLGSTVACLLLKFVTNG 127 (251)
Q Consensus 96 g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~ 127 (251)
.. .|.+.|+||++|++|+++|+++++.++.+
T Consensus 241 ~~-~w~~~WVywvgPiiGailaallY~~l~~p 271 (340)
T 3iyz_A 241 MG-NWENHWIYWVGPIIGAVLAGALYEYVFCP 271 (340)
T ss_pred cc-CCCcEeehhHHHHHHHHHHHHHHHHHhCC
Confidence 65 79999999999999999999999988753
No 27
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=83.95 E-value=19 Score=30.55 Aligned_cols=101 Identities=17% Similarity=0.309 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhcc-cccccchHHHHHHHHhcCCcchhhHHHHHHHhHhHHHHHHHHHHHh--cCC---ccc
Q 025548 58 LVAASVAHAFALFVAVAVGANI-SGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT--NGQ---TTS 131 (251)
Q Consensus 58 ~~~~~l~~g~~~~~~i~~~~~~-sGah~NPavtl~~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~--~~~---~~~ 131 (251)
.+..++.+.+++...++.-+.. || |--.+ ...+.||.+|.+.+--|.-=.+|=++|+++.-++. .+. ..+
T Consensus 68 ~ll~g~~F~vGL~lVvl~G~ELFTg---n~l~~-~a~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~ 143 (285)
T 3kcu_A 68 KLVGGICFSLGLILCVVCGADLFTS---TVLIV-VAKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANG 143 (285)
T ss_dssp HHHHHHHHTHHHHHHHHHTCCCTTT---THHHH-HHHTTTCCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHTGGGTTTT
T ss_pred HHHHHHHHHHHHHHHHHhCcccccc---chHHH-HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCch
Confidence 4555677777777666664443 33 42223 23457888887765444444444444444433331 110 010
Q ss_pred ---c--c---ccCCCCchHHHHHHHHHHHHHHHHHHHhh
Q 025548 132 ---A--F---ALSSGVGAWNAVVFEIVMTFGLVYTVYAT 162 (251)
Q Consensus 132 ---~--~---~~~~~~~~~~~~~~E~~~T~~lv~~v~~~ 162 (251)
. . .-.-+.+..+.|+-=.+|-++..+++...
T Consensus 144 ~~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~~ 182 (285)
T 3kcu_A 144 QWGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMS 182 (285)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 11223466777777777777777776653
No 28
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=73.33 E-value=40 Score=28.24 Aligned_cols=102 Identities=15% Similarity=0.224 Sum_probs=56.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhccccccc---chHHHHHHHHhcCCcchhhHHHHHHHhHhHHHHHHHHHHHhc--CCc
Q 025548 55 PSGLVAASVAHAFALFVAVAVGANISGGHV---NPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTN--GQT 129 (251)
Q Consensus 55 ~~~~~~~~l~~g~~~~~~i~~~~~~sGah~---NPavtl~~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~--~~~ 129 (251)
+...+..++.+.+++...+.. |+.+ |-.......+.|+.+|.+.+--|.-=.+|=++|+++.-.+.. +..
T Consensus 61 g~~~ll~g~~F~~Gl~lVvl~-----g~eLfTgn~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~sg~~ 135 (268)
T 3tds_E 61 PMTKIVMGLSFAIALSLVIMT-----GTELFTGNNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVGTGLV 135 (268)
T ss_dssp TTHHHHHHHTCTHHHHHHHHH-----TCCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHh-----CccccccchHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 344556667776676666555 3333 433233455788899988876666666666666655544331 111
Q ss_pred -cccc-----cc---CCCCchHHHHHHHHHHHHHHHHHHHh
Q 025548 130 -TSAF-----AL---SSGVGAWNAVVFEIVMTFGLVYTVYA 161 (251)
Q Consensus 130 -~~~~-----~~---~~~~~~~~~~~~E~~~T~~lv~~v~~ 161 (251)
.+.. .. .-+.+..+.|+-=.++-++..+++..
T Consensus 136 ~~~~~~~~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~ 176 (268)
T 3tds_E 136 DKGPVAEFFANTAASKASMPFTALFFRGILCNILVCVSVLC 176 (268)
T ss_dssp SSSHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 00 11245566666667777776666654
No 29
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=44.85 E-value=1.4e+02 Score=25.03 Aligned_cols=139 Identities=14% Similarity=0.181 Sum_probs=71.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCc--hHHHHHHHHHHHHHHHHHHhcc-cccccchHHHHHH
Q 025548 16 HPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSG--LVAASVAHAFALFVAVAVGANI-SGGHVNPAVTFGA 92 (251)
Q Consensus 16 ~~~~~~~~~~Ef~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~g~~~~~~i~~~~~~-sGah~NPavtl~~ 92 (251)
+++..|.++.-+++-+.+-+............ ++.+.+ .+..++.+.+++...+..-+.. ||--+- ++ .
T Consensus 27 ~~~~~~~~~~~~~AG~~I~~g~~~~~~v~~~~----~~~~~g~~~ll~g~~F~vGL~lVvl~g~ELFTgn~l~---~~-~ 98 (280)
T 3kly_A 27 KKAAYKSFLLAISAGIQIGIAFVFYTVVTTGA----HDMPYGVTKLLGGLAFSLGLILVVITGGELFTSSVLI---LV-A 98 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----TTSCHHHHHHHHHHHHHHHHHHHHHHTCCCTTTTCCC---CS-S
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCccHHHHHHHHHHHHHHHHHHHccccccccchHH---HH-H
Confidence 34555556666666655544433222211111 111222 4555677777777766664443 343332 22 2
Q ss_pred HHhcCCcchhhHHHHHHHhHhHHHHHHHHHHHh--cC---Cccc---c-----cccCCCCchHHHHHHHHHHHHHHHHHH
Q 025548 93 FVGGNISLLRGILYWIAQLLGSTVACLLLKFVT--NG---QTTS---A-----FALSSGVGAWNAVVFEIVMTFGLVYTV 159 (251)
Q Consensus 93 ~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~--~~---~~~~---~-----~~~~~~~~~~~~~~~E~~~T~~lv~~v 159 (251)
.+.+|.+|.+.+--|.-=.+|=++|+++.-++. .+ .+.+ . -.-.-+.+..+.|+-=.+|-++..+++
T Consensus 99 ~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~~~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaV 178 (280)
T 3kly_A 99 KASGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFMEDGGQLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAV 178 (280)
T ss_dssp SSSSSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTTTTHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 456788888877666666666666655544432 11 0010 0 011223466777777777777777776
Q ss_pred Hhh
Q 025548 160 YAT 162 (251)
Q Consensus 160 ~~~ 162 (251)
...
T Consensus 179 w~~ 181 (280)
T 3kly_A 179 WMT 181 (280)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 30
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=41.83 E-value=6.2 Score=34.22 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=16.6
Q ss_pred cccccccchHHHHHHHHhcC
Q 025548 78 NISGGHVNPAVTFGAFVGGN 97 (251)
Q Consensus 78 ~~sGah~NPavtl~~~l~g~ 97 (251)
.=||||++||.+++-.+..+
T Consensus 10 GGTgGHi~palala~~L~~~ 29 (365)
T 3s2u_A 10 GGTGGHVFPALACAREFQAR 29 (365)
T ss_dssp CSSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 34689999999999998754
No 31
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=33.28 E-value=2.1e+02 Score=23.68 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccccc---chHHHHHHHHhcCCcchhhHHHHHHHhHhHHHHHHHHHHH
Q 025548 58 LVAASVAHAFALFVAVAVGANISGGHV---NPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFV 124 (251)
Q Consensus 58 ~~~~~l~~g~~~~~~i~~~~~~sGah~---NPavtl~~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~ 124 (251)
.+..++.+.+++...+.. |+.+ |-.......+.|+.+|.+.+--|.-=.+|=++|+++.-++
T Consensus 58 ~ll~g~~F~vGl~lVvl~-----g~eLfTgn~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l 122 (261)
T 4fc4_A 58 PLVMGATFGIALTLVIIA-----GSELFTGHTMFLTLGVKAGTISHGQMWAILPQTWLGNLVGSVFVALL 122 (261)
T ss_dssp HHHHHHHTTHHHHHHHHT-----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-----CCcccccchHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666665544 3433 4333334456788998887777655555555555544333
Done!