Query 025549
Match_columns 251
No_of_seqs 395 out of 2615
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:59:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4207 Predicted splicing fac 99.9 1E-24 2.2E-29 171.5 18.8 99 1-101 1-99 (256)
2 KOG0107 Alternative splicing f 99.9 1.3E-21 2.9E-26 150.3 14.7 79 14-97 9-87 (195)
3 PLN03134 glycine-rich RNA-bind 99.8 2.4E-20 5.2E-25 144.3 13.4 86 13-98 32-117 (144)
4 KOG0130 RNA-binding protein RB 99.8 4.4E-19 9.5E-24 130.9 7.6 92 5-96 62-153 (170)
5 TIGR01659 sex-lethal sex-letha 99.8 3.2E-18 7E-23 150.2 11.7 85 10-94 102-186 (346)
6 KOG0113 U1 small nuclear ribon 99.8 8.3E-17 1.8E-21 133.4 19.3 82 13-94 99-180 (335)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 4.1E-18 8.9E-23 150.7 12.2 84 13-96 267-350 (352)
8 KOG0121 Nuclear cap-binding pr 99.7 7.3E-18 1.6E-22 123.4 8.3 88 13-100 34-121 (153)
9 PF00076 RRM_1: RNA recognitio 99.7 1.2E-17 2.5E-22 113.0 8.5 70 18-88 1-70 (70)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 2.3E-17 5E-22 145.9 10.7 82 15-96 3-84 (352)
11 KOG0122 Translation initiation 99.7 3.1E-17 6.8E-22 132.5 9.5 84 12-95 186-269 (270)
12 TIGR01659 sex-lethal sex-letha 99.7 1.6E-16 3.4E-21 139.5 10.8 84 14-97 192-277 (346)
13 PF14259 RRM_6: RNA recognitio 99.7 3.4E-16 7.3E-21 106.2 8.9 70 18-88 1-70 (70)
14 KOG0126 Predicted RNA-binding 99.7 1.5E-17 3.2E-22 128.8 0.3 85 9-93 29-113 (219)
15 KOG0149 Predicted RNA-binding 99.7 3.9E-16 8.4E-21 125.7 8.2 79 15-94 12-90 (247)
16 PLN03120 nucleic acid binding 99.6 9.8E-16 2.1E-20 127.1 10.6 76 15-94 4-79 (260)
17 KOG0105 Alternative splicing f 99.6 1E-15 2.2E-20 119.0 9.7 81 13-96 4-84 (241)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.6 1.1E-15 2.5E-20 141.5 11.7 83 13-95 293-375 (509)
19 TIGR01645 half-pint poly-U bin 99.6 1.1E-15 2.3E-20 141.6 10.7 85 14-98 203-287 (612)
20 TIGR01622 SF-CC1 splicing fact 99.6 1.8E-15 3.8E-20 138.5 11.4 80 15-94 186-265 (457)
21 KOG0125 Ataxin 2-binding prote 99.6 1.1E-15 2.4E-20 128.3 8.6 81 13-95 94-174 (376)
22 smart00362 RRM_2 RNA recogniti 99.6 2.9E-15 6.4E-20 100.6 8.6 72 17-90 1-72 (72)
23 PLN03121 nucleic acid binding 99.6 3.5E-15 7.6E-20 121.9 10.4 77 13-93 3-79 (243)
24 TIGR01645 half-pint poly-U bin 99.6 1.9E-15 4.1E-20 140.0 9.8 81 13-93 105-185 (612)
25 PLN03213 repressor of silencin 99.6 2E-15 4.3E-20 132.8 9.4 79 12-94 7-87 (759)
26 KOG0111 Cyclophilin-type pepti 99.6 4.7E-16 1E-20 123.9 4.9 85 13-97 8-92 (298)
27 TIGR01622 SF-CC1 splicing fact 99.6 3.6E-15 7.8E-20 136.4 11.0 82 12-94 86-167 (457)
28 KOG0114 Predicted RNA-binding 99.6 5.2E-15 1.1E-19 104.6 9.0 83 11-96 14-96 (124)
29 KOG0148 Apoptosis-promoting RN 99.6 2.3E-15 5.1E-20 123.3 7.7 88 9-96 56-143 (321)
30 KOG0131 Splicing factor 3b, su 99.6 1.8E-15 3.9E-20 117.3 6.4 83 11-93 5-87 (203)
31 KOG0117 Heterogeneous nuclear 99.6 5.9E-15 1.3E-19 128.3 9.8 80 13-92 81-161 (506)
32 TIGR01628 PABP-1234 polyadenyl 99.6 6.2E-15 1.4E-19 138.2 10.7 79 17-95 2-80 (562)
33 smart00360 RRM RNA recognition 99.6 7E-15 1.5E-19 98.4 7.9 71 20-90 1-71 (71)
34 KOG0148 Apoptosis-promoting RN 99.6 6.7E-15 1.4E-19 120.7 8.9 78 13-96 162-239 (321)
35 TIGR01648 hnRNP-R-Q heterogene 99.6 7.4E-15 1.6E-19 135.7 9.3 79 13-92 56-135 (578)
36 cd00590 RRM RRM (RNA recogniti 99.6 3.4E-14 7.3E-19 95.9 9.5 74 17-91 1-74 (74)
37 TIGR01628 PABP-1234 polyadenyl 99.6 1.5E-14 3.3E-19 135.6 10.4 84 13-97 283-366 (562)
38 TIGR01648 hnRNP-R-Q heterogene 99.5 2.5E-14 5.5E-19 132.2 10.9 78 13-98 231-310 (578)
39 COG0724 RNA-binding proteins ( 99.5 2.4E-14 5.2E-19 120.6 9.8 80 15-94 115-194 (306)
40 KOG0108 mRNA cleavage and poly 99.5 1.7E-14 3.7E-19 128.8 8.6 86 16-101 19-104 (435)
41 KOG0145 RNA-binding protein EL 99.5 6.2E-14 1.3E-18 114.5 10.3 86 10-95 273-358 (360)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 6.8E-14 1.5E-18 128.7 11.0 78 13-95 273-351 (481)
43 KOG0145 RNA-binding protein EL 99.5 7.9E-14 1.7E-18 113.9 9.1 82 14-95 40-121 (360)
44 KOG0127 Nucleolar protein fibr 99.5 8.1E-14 1.8E-18 123.9 9.0 84 15-99 117-200 (678)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 1.3E-13 2.8E-18 126.9 10.0 75 15-95 2-78 (481)
46 KOG0127 Nucleolar protein fibr 99.5 1.5E-13 3.3E-18 122.2 9.0 90 11-100 288-383 (678)
47 KOG0109 RNA-binding protein LA 99.5 5.7E-14 1.2E-18 116.3 5.6 72 16-95 3-74 (346)
48 KOG0144 RNA-binding protein CU 99.5 7E-14 1.5E-18 121.3 5.8 85 13-98 122-209 (510)
49 KOG0117 Heterogeneous nuclear 99.5 1.6E-13 3.4E-18 119.6 7.7 78 13-98 257-334 (506)
50 PF13893 RRM_5: RNA recognitio 99.5 3.2E-13 6.8E-18 87.5 7.2 56 32-92 1-56 (56)
51 KOG0415 Predicted peptidyl pro 99.5 1E-13 2.3E-18 117.5 6.3 84 12-95 236-319 (479)
52 KOG4212 RNA-binding protein hn 99.5 4E-13 8.6E-18 116.8 9.9 85 12-97 41-126 (608)
53 KOG0144 RNA-binding protein CU 99.4 2.5E-13 5.3E-18 117.9 8.1 83 13-95 32-117 (510)
54 KOG0146 RNA-binding protein ET 99.4 1.4E-13 3.1E-18 112.7 5.4 85 13-97 283-367 (371)
55 smart00361 RRM_1 RNA recogniti 99.4 6E-13 1.3E-17 90.3 7.5 61 29-89 2-69 (70)
56 KOG0147 Transcriptional coacti 99.4 2E-13 4.3E-18 121.7 6.3 77 18-94 281-357 (549)
57 KOG0124 Polypyrimidine tract-b 99.4 2.9E-13 6.3E-18 115.3 5.3 79 15-93 113-191 (544)
58 KOG4208 Nucleolar RNA-binding 99.4 1.2E-12 2.6E-17 103.7 8.2 86 10-95 44-130 (214)
59 TIGR01642 U2AF_lg U2 snRNP aux 99.3 3.6E-12 7.7E-17 118.2 9.1 74 13-93 173-258 (509)
60 KOG4206 Spliceosomal protein s 99.3 6.2E-12 1.3E-16 101.2 8.3 85 11-98 5-93 (221)
61 KOG0109 RNA-binding protein LA 99.3 2.2E-12 4.7E-17 107.0 5.2 75 12-94 75-149 (346)
62 KOG0131 Splicing factor 3b, su 99.3 7.8E-12 1.7E-16 97.2 6.3 86 11-96 92-178 (203)
63 KOG0153 Predicted RNA-binding 99.3 1.7E-11 3.8E-16 103.9 8.6 85 4-94 217-302 (377)
64 KOG0132 RNA polymerase II C-te 99.2 2.2E-11 4.8E-16 112.5 8.1 75 15-95 421-495 (894)
65 KOG0124 Polypyrimidine tract-b 99.2 2.6E-11 5.7E-16 103.5 7.5 82 15-96 210-291 (544)
66 KOG4212 RNA-binding protein hn 99.2 3.1E-11 6.7E-16 105.2 8.0 77 11-92 532-608 (608)
67 KOG0110 RNA-binding protein (R 99.2 1.1E-11 2.4E-16 113.6 5.6 87 13-99 611-697 (725)
68 KOG0123 Polyadenylate-binding 99.2 4.2E-11 9.2E-16 106.0 8.1 79 15-96 76-154 (369)
69 KOG0106 Alternative splicing f 99.2 1.7E-11 3.8E-16 99.4 4.0 72 16-95 2-73 (216)
70 KOG4661 Hsp27-ERE-TATA-binding 99.2 6.4E-11 1.4E-15 106.2 7.6 84 15-98 405-488 (940)
71 KOG0533 RRM motif-containing p 99.2 1.3E-10 2.8E-15 96.3 8.1 80 15-95 83-162 (243)
72 KOG4676 Splicing factor, argin 99.1 1.3E-10 2.8E-15 100.0 8.2 72 17-89 9-83 (479)
73 KOG0110 RNA-binding protein (R 99.1 1E-10 2.2E-15 107.4 7.8 77 17-93 517-596 (725)
74 PF04059 RRM_2: RNA recognitio 99.1 3.8E-10 8.3E-15 80.6 8.8 82 16-97 2-89 (97)
75 KOG0146 RNA-binding protein ET 99.1 9.2E-11 2E-15 96.4 5.6 83 14-97 18-103 (371)
76 KOG4454 RNA binding protein (R 99.1 4E-11 8.6E-16 95.9 2.4 82 11-94 5-86 (267)
77 KOG0116 RasGAP SH3 binding pro 99.1 5.4E-10 1.2E-14 99.6 9.4 84 13-97 286-369 (419)
78 KOG4205 RNA-binding protein mu 99.1 1.2E-10 2.6E-15 100.1 4.7 80 14-94 5-84 (311)
79 KOG0123 Polyadenylate-binding 99.0 6E-10 1.3E-14 98.7 7.9 75 16-96 2-76 (369)
80 KOG4209 Splicing factor RNPS1, 99.0 3.6E-10 7.8E-15 93.7 6.0 82 13-95 99-180 (231)
81 KOG1457 RNA binding protein (c 99.0 2.5E-09 5.4E-14 86.0 9.6 86 15-100 34-123 (284)
82 KOG4205 RNA-binding protein mu 99.0 4.1E-10 8.9E-15 96.8 5.3 84 15-99 97-180 (311)
83 KOG1548 Transcription elongati 99.0 2.1E-09 4.5E-14 91.4 7.9 85 13-98 132-224 (382)
84 KOG0105 Alternative splicing f 98.9 1.7E-08 3.7E-13 79.0 10.6 82 4-92 104-187 (241)
85 KOG4660 Protein Mei2, essentia 98.9 1.5E-09 3.2E-14 97.5 4.8 71 13-88 73-143 (549)
86 KOG1995 Conserved Zn-finger pr 98.9 2.4E-09 5.3E-14 91.6 5.7 87 10-96 61-155 (351)
87 KOG0106 Alternative splicing f 98.8 7.7E-09 1.7E-13 84.0 6.2 72 10-89 94-165 (216)
88 KOG0120 Splicing factor U2AF, 98.8 4.7E-09 1E-13 94.9 5.2 87 10-96 284-370 (500)
89 KOG4211 Splicing factor hnRNP- 98.8 3.1E-08 6.6E-13 88.0 9.0 82 11-96 6-87 (510)
90 PF08777 RRM_3: RNA binding mo 98.8 2.3E-08 4.9E-13 73.0 6.3 73 15-93 1-78 (105)
91 KOG0151 Predicted splicing reg 98.8 1.6E-08 3.6E-13 93.0 6.7 84 13-96 172-258 (877)
92 KOG0226 RNA-binding proteins [ 98.7 1.8E-08 3.9E-13 82.5 4.6 81 13-93 188-268 (290)
93 KOG1190 Polypyrimidine tract-b 98.7 8.8E-08 1.9E-12 83.3 8.2 76 15-95 297-373 (492)
94 PF11608 Limkain-b1: Limkain b 98.6 1.7E-07 3.7E-12 64.2 6.2 69 16-94 3-76 (90)
95 KOG4206 Spliceosomal protein s 98.6 2.4E-07 5.3E-12 74.9 8.0 77 12-93 143-220 (221)
96 KOG2202 U2 snRNP splicing fact 98.6 3.4E-08 7.3E-13 81.1 3.0 83 30-113 83-166 (260)
97 KOG4849 mRNA cleavage factor I 98.5 8.1E-08 1.8E-12 82.0 3.9 78 15-92 80-159 (498)
98 KOG1457 RNA binding protein (c 98.5 1E-07 2.2E-12 76.8 4.1 69 10-82 205-273 (284)
99 KOG1456 Heterogeneous nuclear 98.5 8.9E-07 1.9E-11 76.4 9.4 80 10-94 282-362 (494)
100 KOG4211 Splicing factor hnRNP- 98.5 5.9E-07 1.3E-11 80.0 7.9 79 13-93 101-180 (510)
101 KOG4676 Splicing factor, argin 98.4 7.8E-08 1.7E-12 83.2 1.6 74 16-94 152-225 (479)
102 KOG0147 Transcriptional coacti 98.4 7.1E-08 1.5E-12 86.7 1.4 85 10-95 174-258 (549)
103 KOG4210 Nuclear localization s 98.3 4.8E-07 1E-11 77.6 4.4 83 15-98 184-267 (285)
104 KOG1456 Heterogeneous nuclear 98.3 3.1E-06 6.8E-11 73.1 9.2 85 7-96 112-200 (494)
105 COG5175 MOT2 Transcriptional r 98.3 1.3E-06 2.8E-11 74.5 6.7 82 13-94 112-202 (480)
106 KOG2416 Acinus (induces apopto 98.3 7.1E-07 1.5E-11 81.0 4.4 82 7-94 436-521 (718)
107 KOG1190 Polypyrimidine tract-b 98.3 6.6E-07 1.4E-11 77.9 3.9 75 13-93 26-102 (492)
108 KOG2314 Translation initiation 98.2 4E-06 8.6E-11 75.9 7.8 80 13-93 56-142 (698)
109 PF05172 Nup35_RRM: Nup53/35/4 98.2 7.5E-06 1.6E-10 59.0 7.6 78 14-93 5-90 (100)
110 PF14605 Nup35_RRM_2: Nup53/35 98.2 4.2E-06 9.1E-11 53.2 5.5 52 16-74 2-53 (53)
111 KOG1548 Transcription elongati 98.2 9.8E-06 2.1E-10 69.4 8.9 81 10-94 260-351 (382)
112 KOG3152 TBP-binding protein, a 98.2 1.1E-06 2.4E-11 72.2 2.9 73 14-86 73-157 (278)
113 KOG0129 Predicted RNA-binding 98.2 7E-06 1.5E-10 73.7 8.1 69 8-76 363-432 (520)
114 KOG4307 RNA binding protein RB 98.2 5.3E-06 1.2E-10 76.7 7.2 74 17-91 869-943 (944)
115 KOG0120 Splicing factor U2AF, 98.1 7.3E-06 1.6E-10 74.5 7.4 64 30-93 424-490 (500)
116 KOG1365 RNA-binding protein Fu 98.1 3.5E-06 7.5E-11 73.0 4.3 88 12-100 277-367 (508)
117 PF08952 DUF1866: Domain of un 98.0 3.9E-05 8.5E-10 58.6 8.1 55 31-94 52-106 (146)
118 KOG1855 Predicted RNA-binding 97.9 9.8E-06 2.1E-10 71.2 3.4 67 14-80 230-309 (484)
119 KOG0112 Large RNA-binding prot 97.8 3E-05 6.5E-10 73.8 5.0 78 11-94 451-530 (975)
120 KOG1996 mRNA splicing factor [ 97.8 6.2E-05 1.3E-09 63.3 6.1 66 29-94 300-366 (378)
121 KOG0129 Predicted RNA-binding 97.8 0.00013 2.9E-09 65.6 8.5 63 15-78 259-327 (520)
122 KOG1365 RNA-binding protein Fu 97.5 0.0001 2.2E-09 64.1 4.2 72 16-89 162-237 (508)
123 KOG4660 Protein Mei2, essentia 97.5 0.00018 3.9E-09 65.4 5.0 82 16-97 389-475 (549)
124 KOG0128 RNA-binding protein SA 97.4 6.1E-05 1.3E-09 71.4 1.9 79 15-94 736-814 (881)
125 KOG0128 RNA-binding protein SA 97.4 5.2E-06 1.1E-10 78.4 -5.2 79 13-91 665-743 (881)
126 KOG4207 Predicted splicing fac 97.4 0.018 3.9E-07 46.5 15.3 64 20-83 21-86 (256)
127 PF03467 Smg4_UPF3: Smg-4/UPF3 97.4 0.00031 6.7E-09 56.1 5.4 82 13-94 5-97 (176)
128 PF10309 DUF2414: Protein of u 97.4 0.00094 2E-08 43.5 6.3 55 15-77 5-62 (62)
129 KOG2068 MOT2 transcription fac 97.3 8.9E-05 1.9E-09 63.6 1.5 80 15-95 77-163 (327)
130 KOG4307 RNA binding protein RB 97.3 0.00021 4.6E-09 66.5 4.0 82 10-92 429-511 (944)
131 KOG2193 IGF-II mRNA-binding pr 97.3 0.00021 4.5E-09 63.0 3.6 70 16-93 2-74 (584)
132 PF08675 RNA_bind: RNA binding 97.3 0.00089 1.9E-08 46.1 5.9 57 14-79 8-64 (87)
133 KOG0112 Large RNA-binding prot 97.2 7.5E-05 1.6E-09 71.2 -0.2 81 11-92 368-448 (975)
134 KOG2591 c-Mpl binding protein, 97.1 0.00072 1.6E-08 61.6 5.0 73 11-90 171-247 (684)
135 KOG2135 Proteins containing th 97.1 0.00032 7E-09 62.6 2.2 75 14-95 371-446 (526)
136 KOG4285 Mitotic phosphoprotein 97.0 0.0024 5.2E-08 54.1 7.2 71 15-93 197-268 (350)
137 PF07576 BRAP2: BRCA1-associat 97.0 0.0088 1.9E-07 43.9 8.7 69 13-83 11-80 (110)
138 PF15023 DUF4523: Protein of u 96.9 0.007 1.5E-07 46.0 7.6 72 14-93 85-160 (166)
139 KOG0115 RNA-binding protein p5 96.8 0.0012 2.7E-08 54.6 3.8 76 16-92 32-111 (275)
140 KOG2253 U1 snRNP complex, subu 96.6 0.0014 3E-08 61.0 2.8 71 12-91 37-107 (668)
141 PF04847 Calcipressin: Calcipr 96.6 0.0051 1.1E-07 49.4 5.7 63 28-96 8-72 (184)
142 PF03880 DbpA: DbpA RNA bindin 96.6 0.011 2.3E-07 40.2 6.5 59 25-92 11-74 (74)
143 PF11767 SET_assoc: Histone ly 96.3 0.016 3.4E-07 38.4 5.5 55 26-89 11-65 (66)
144 KOG4574 RNA-binding protein (c 96.2 0.0029 6.3E-08 60.4 2.5 77 18-100 301-379 (1007)
145 KOG4210 Nuclear localization s 95.9 0.0049 1.1E-07 53.0 2.3 81 13-93 86-166 (285)
146 KOG0804 Cytoplasmic Zn-finger 95.7 0.038 8.2E-07 49.5 7.2 68 15-84 74-142 (493)
147 KOG2318 Uncharacterized conser 95.7 0.05 1.1E-06 50.2 7.7 82 12-93 171-306 (650)
148 KOG2193 IGF-II mRNA-binding pr 94.9 0.0019 4.2E-08 57.1 -3.4 80 15-97 80-159 (584)
149 KOG4483 Uncharacterized conser 94.9 0.076 1.6E-06 46.9 6.2 57 13-76 389-446 (528)
150 KOG4019 Calcineurin-mediated s 94.3 0.032 7E-07 44.0 2.3 75 15-95 10-90 (193)
151 PF07530 PRE_C2HC: Associated 92.9 0.3 6.4E-06 32.6 4.8 61 30-93 2-63 (68)
152 smart00596 PRE_C2HC PRE_C2HC d 92.8 0.2 4.3E-06 33.3 3.8 61 30-93 2-63 (69)
153 KOG4410 5-formyltetrahydrofola 91.8 0.64 1.4E-05 39.5 6.5 47 15-67 330-377 (396)
154 PF03468 XS: XS domain; Inter 90.4 0.65 1.4E-05 34.4 4.8 57 16-75 9-75 (116)
155 COG5638 Uncharacterized conser 90.1 1.3 2.7E-05 39.7 7.0 85 9-93 140-296 (622)
156 KOG2295 C2H2 Zn-finger protein 89.4 0.041 9E-07 50.5 -2.6 73 13-85 229-301 (648)
157 PRK11901 hypothetical protein; 89.3 1 2.2E-05 39.2 5.8 65 13-82 243-309 (327)
158 PRK10629 EnvZ/OmpR regulon mod 88.6 3.6 7.8E-05 31.0 7.8 74 12-93 32-109 (127)
159 KOG1295 Nonsense-mediated deca 87.9 0.6 1.3E-05 41.3 3.6 68 15-82 7-77 (376)
160 COG0724 RNA-binding proteins ( 85.9 1 2.2E-05 37.1 3.9 64 12-75 222-285 (306)
161 PF10567 Nab6_mRNP_bdg: RNA-re 85.5 2.3 5E-05 36.4 5.7 82 12-93 12-106 (309)
162 KOG2891 Surface glycoprotein [ 85.3 0.23 5.1E-06 41.9 -0.3 68 15-82 149-247 (445)
163 KOG4365 Uncharacterized conser 85.1 0.18 3.8E-06 45.2 -1.1 77 16-93 4-80 (572)
164 cd06410 PB1_UP2 Uncharacterize 84.5 8.5 0.00018 27.5 7.5 78 1-80 1-85 (97)
165 TIGR03636 L23_arch archaeal ri 83.4 3.8 8.1E-05 28.0 5.0 58 17-77 15-74 (77)
166 PRK14548 50S ribosomal protein 82.7 3.8 8.2E-05 28.5 4.9 57 18-77 23-81 (84)
167 PF00403 HMA: Heavy-metal-asso 82.2 6.3 0.00014 25.0 5.7 54 17-76 1-58 (62)
168 PRK11634 ATP-dependent RNA hel 82.0 31 0.00067 33.3 12.5 70 16-94 486-562 (629)
169 COG5193 LHP1 La protein, small 80.4 0.98 2.1E-05 40.2 1.6 59 17-75 176-244 (438)
170 cd06405 PB1_Mekk2_3 The PB1 do 79.2 17 0.00036 24.6 7.5 63 20-91 13-76 (79)
171 KOG4008 rRNA processing protei 77.0 3.4 7.5E-05 34.2 3.7 35 12-46 37-71 (261)
172 COG0150 PurM Phosphoribosylami 75.9 0.83 1.8E-05 40.0 -0.1 48 29-80 275-322 (345)
173 PF15513 DUF4651: Domain of un 74.9 8.9 0.00019 24.9 4.5 19 30-48 9-27 (62)
174 KOG4454 RNA binding protein (R 74.8 0.65 1.4E-05 38.0 -1.0 72 15-87 80-155 (267)
175 smart00666 PB1 PB1 domain. Pho 74.4 14 0.00031 24.8 5.9 56 18-78 12-69 (81)
176 PRK02886 hypothetical protein; 72.6 14 0.00031 25.7 5.4 54 13-82 5-58 (87)
177 PF09902 DUF2129: Uncharacteri 72.2 16 0.00034 24.5 5.4 52 15-82 3-54 (71)
178 cd04878 ACT_AHAS N-terminal AC 72.1 22 0.00048 22.5 7.2 61 17-79 2-64 (72)
179 KOG3702 Nuclear polyadenylated 71.9 1.8 4E-05 40.9 1.1 71 17-88 513-583 (681)
180 PF08734 GYD: GYD domain; Int 70.5 20 0.00043 25.2 5.9 46 29-78 22-68 (91)
181 PTZ00191 60S ribosomal protein 70.2 12 0.00025 28.9 4.9 56 17-75 83-140 (145)
182 COG2608 CopZ Copper chaperone 70.0 13 0.00029 24.6 4.8 46 15-66 3-48 (71)
183 KOG4840 Predicted hydrolases o 69.5 7.7 0.00017 32.3 4.0 73 15-92 37-115 (299)
184 PRK10905 cell division protein 68.6 16 0.00034 31.9 5.9 62 14-80 246-309 (328)
185 PF09707 Cas_Cas2CT1978: CRISP 67.7 11 0.00023 26.3 4.0 46 17-65 27-72 (86)
186 KOG4213 RNA-binding protein La 67.4 7.8 0.00017 30.9 3.5 49 27-76 118-169 (205)
187 PRK08559 nusG transcription an 67.0 20 0.00043 27.8 5.8 34 42-80 36-69 (153)
188 PHA03008 hypothetical protein; 67.0 13 0.00027 30.2 4.7 50 1-50 6-56 (234)
189 smart00195 DSPc Dual specifici 65.9 22 0.00047 26.5 5.8 73 17-93 7-87 (138)
190 PF13291 ACT_4: ACT domain; PD 65.3 35 0.00076 22.7 6.2 64 17-80 8-72 (80)
191 PRK02302 hypothetical protein; 64.8 26 0.00056 24.6 5.4 54 13-82 7-60 (89)
192 COG3254 Uncharacterized conser 64.0 22 0.00047 25.7 5.0 44 29-75 26-69 (105)
193 PRK11230 glycolate oxidase sub 63.3 22 0.00047 33.3 6.4 49 29-78 203-255 (499)
194 KOG0156 Cytochrome P450 CYP2 s 62.9 11 0.00025 35.1 4.4 60 18-87 35-97 (489)
195 KOG0835 Cyclin L [General func 62.5 12 0.00027 32.6 4.2 11 60-70 176-186 (367)
196 cd06404 PB1_aPKC PB1 domain is 62.4 49 0.0011 22.9 6.7 55 17-78 10-69 (83)
197 COG5507 Uncharacterized conser 62.0 9.5 0.00021 27.2 2.8 21 57-77 66-86 (117)
198 PF05036 SPOR: Sporulation rel 61.5 1.6 3.4E-05 28.9 -1.1 62 14-78 3-65 (76)
199 PF08544 GHMP_kinases_C: GHMP 60.3 31 0.00066 23.1 5.3 44 30-78 37-80 (85)
200 PF02714 DUF221: Domain of unk 60.1 11 0.00023 32.9 3.5 33 60-94 1-33 (325)
201 COG0030 KsgA Dimethyladenosine 58.7 12 0.00027 31.7 3.5 28 15-42 95-122 (259)
202 PF05727 UPF0228: Uncharacteri 58.5 27 0.00058 26.0 4.8 62 19-92 55-123 (127)
203 PF13721 SecD-TM1: SecD export 58.5 66 0.0014 23.0 7.0 64 13-84 29-96 (101)
204 KOG0107 Alternative splicing f 58.4 57 0.0012 26.1 6.8 6 88-93 51-56 (195)
205 PF04127 DFP: DNA / pantothena 57.6 24 0.00053 28.3 4.9 60 16-77 19-79 (185)
206 PF14026 DUF4242: Protein of u 56.8 59 0.0013 22.0 7.9 61 18-81 3-70 (77)
207 KOG3424 40S ribosomal protein 56.5 34 0.00073 25.3 4.9 47 26-73 34-85 (132)
208 PF00564 PB1: PB1 domain; Int 56.3 16 0.00034 24.7 3.2 61 21-90 16-80 (84)
209 PF01842 ACT: ACT domain; Int 55.6 48 0.001 20.6 5.7 47 28-77 13-61 (66)
210 COG1098 VacB Predicted RNA bin 55.5 24 0.00052 26.4 4.1 34 60-93 21-62 (129)
211 cd04903 ACT_LSD C-terminal ACT 54.9 49 0.0011 20.8 5.4 58 18-78 2-60 (71)
212 cd00027 BRCT Breast Cancer Sup 54.5 36 0.00079 21.0 4.7 27 16-42 2-28 (72)
213 PF11284 DUF3085: Protein of u 54.5 73 0.0016 22.4 7.0 61 1-78 14-74 (90)
214 TIGR00387 glcD glycolate oxida 54.5 28 0.00061 31.6 5.4 51 26-77 143-197 (413)
215 COG0225 MsrA Peptide methionin 54.4 38 0.00083 26.9 5.3 76 17-95 59-138 (174)
216 cd05992 PB1 The PB1 domain is 53.9 47 0.001 22.1 5.3 53 21-78 14-69 (81)
217 PF08156 NOP5NT: NOP5NT (NUC12 53.6 5.1 0.00011 26.5 0.3 39 30-78 27-65 (67)
218 PF14111 DUF4283: Domain of un 53.3 5.1 0.00011 30.6 0.4 67 18-93 18-90 (153)
219 PF05189 RTC_insert: RNA 3'-te 53.1 26 0.00057 25.0 4.1 49 17-65 12-65 (103)
220 PF09383 NIL: NIL domain; Int 53.0 28 0.00061 23.1 4.0 55 25-79 12-68 (76)
221 PRK04199 rpl10e 50S ribosomal 52.6 79 0.0017 25.1 6.9 57 14-76 80-151 (172)
222 PF11491 DUF3213: Protein of u 52.5 30 0.00064 23.9 3.9 66 18-90 3-72 (88)
223 PF01282 Ribosomal_S24e: Ribos 52.0 77 0.0017 21.9 6.4 46 26-72 12-62 (84)
224 PRK11558 putative ssRNA endonu 51.9 22 0.00047 25.4 3.3 47 17-66 29-75 (97)
225 CHL00123 rps6 ribosomal protei 51.5 57 0.0012 23.1 5.5 57 17-75 10-80 (97)
226 PF07292 NID: Nmi/IFP 35 domai 51.3 9.3 0.0002 26.8 1.4 24 14-37 51-74 (88)
227 PF14893 PNMA: PNMA 51.2 23 0.0005 31.2 4.1 81 13-98 16-100 (331)
228 cd04879 ACT_3PGDH-like ACT_3PG 51.2 58 0.0013 20.3 5.6 32 18-49 2-34 (71)
229 COG1207 GlmU N-acetylglucosami 51.1 53 0.0011 30.1 6.3 68 13-80 95-174 (460)
230 cd04880 ACT_AAAH-PDT-like ACT 50.5 69 0.0015 20.9 6.9 51 28-79 12-66 (75)
231 KOG2187 tRNA uracil-5-methyltr 50.3 15 0.00033 34.2 2.9 37 58-94 64-100 (534)
232 cd06408 PB1_NoxR The PB1 domai 50.1 40 0.00088 23.5 4.4 54 18-77 13-67 (86)
233 cd04909 ACT_PDH-BS C-terminal 50.0 65 0.0014 20.5 7.3 49 28-78 14-63 (69)
234 KOG1999 RNA polymerase II tran 49.7 35 0.00076 34.2 5.3 34 55-89 208-241 (1024)
235 PF03439 Spt5-NGN: Early trans 49.6 38 0.00082 23.3 4.3 26 56-81 43-68 (84)
236 cd06396 PB1_NBR1 The PB1 domai 49.0 86 0.0019 21.6 6.2 64 20-91 13-78 (81)
237 KOG2836 Protein tyrosine phosp 48.8 40 0.00087 25.7 4.5 48 1-48 1-49 (173)
238 PLN02805 D-lactate dehydrogena 48.6 43 0.00094 31.8 5.8 49 28-77 279-331 (555)
239 TIGR00405 L26e_arch ribosomal 47.5 65 0.0014 24.5 5.7 25 56-80 37-61 (145)
240 KOG0829 60S ribosomal protein 47.4 23 0.00049 27.4 3.0 72 5-76 7-89 (169)
241 cd04904 ACT_AAAH ACT domain of 47.3 81 0.0018 20.8 8.0 51 28-79 13-65 (74)
242 PF02829 3H: 3H domain; Inter 46.7 80 0.0017 22.5 5.6 53 25-80 7-59 (98)
243 cd04889 ACT_PDH-BS-like C-term 45.9 68 0.0015 19.5 6.6 43 29-74 12-55 (56)
244 KOG3671 Actin regulatory prote 45.7 34 0.00073 31.7 4.3 50 26-80 89-138 (569)
245 COG4010 Uncharacterized protei 45.5 56 0.0012 25.1 4.8 47 22-78 118-164 (170)
246 PF07237 DUF1428: Protein of u 45.4 83 0.0018 22.7 5.5 48 30-77 23-85 (103)
247 PRK14054 methionine sulfoxide 45.3 1E+02 0.0022 24.5 6.6 74 17-93 56-133 (172)
248 PRK11633 cell division protein 45.0 68 0.0015 26.7 5.7 73 13-87 147-221 (226)
249 KOG0635 Adenosine 5'-phosphosu 44.8 37 0.00079 26.7 3.8 33 13-45 29-64 (207)
250 PF11823 DUF3343: Protein of u 44.7 25 0.00054 23.4 2.6 25 58-82 2-26 (73)
251 PF07876 Dabb: Stress responsi 44.7 1E+02 0.0022 21.1 6.5 56 18-73 4-70 (97)
252 PF09869 DUF2096: Uncharacteri 44.5 1.4E+02 0.003 23.6 7.0 49 20-78 116-164 (169)
253 cd04887 ACT_MalLac-Enz ACT_Mal 44.5 85 0.0018 20.2 7.0 61 18-79 2-63 (74)
254 cd04902 ACT_3PGDH-xct C-termin 44.5 82 0.0018 20.1 5.3 31 19-49 3-34 (73)
255 PF14581 SseB_C: SseB protein 44.4 44 0.00096 23.9 4.2 78 15-93 5-89 (108)
256 PRK01178 rps24e 30S ribosomal 44.0 1.2E+02 0.0026 21.8 6.4 46 26-72 30-80 (99)
257 PF00585 Thr_dehydrat_C: C-ter 43.2 66 0.0014 22.5 4.7 62 17-80 11-74 (91)
258 PRK08577 hypothetical protein; 42.9 1.4E+02 0.0031 22.3 7.2 64 15-80 56-123 (136)
259 smart00457 MACPF membrane-atta 42.9 25 0.00054 28.2 2.9 29 19-47 29-59 (194)
260 PRK13014 methionine sulfoxide 42.2 1E+02 0.0022 24.8 6.2 75 17-94 61-139 (186)
261 PF13046 DUF3906: Protein of u 41.9 27 0.00058 22.8 2.3 33 28-62 31-63 (64)
262 PF12623 Hen1_L: RNA repair, l 41.3 54 0.0012 27.3 4.5 64 15-78 118-184 (245)
263 PF03389 MobA_MobL: MobA/MobL 41.3 69 0.0015 26.3 5.3 49 16-67 68-124 (216)
264 TIGR02223 ftsN cell division p 40.9 52 0.0011 28.6 4.7 69 14-87 226-296 (298)
265 PTZ00071 40S ribosomal protein 40.8 70 0.0015 24.2 4.7 45 26-71 35-85 (132)
266 KOG1232 Proteins containing th 40.5 31 0.00067 31.0 3.2 52 22-74 231-286 (511)
267 TIGR00279 L10e ribosomal prote 40.2 1.2E+02 0.0027 24.0 6.2 61 15-82 81-156 (172)
268 COG2061 ACT-domain-containing 40.2 1.7E+02 0.0038 22.8 6.8 76 13-89 86-163 (170)
269 TIGR01873 cas_CT1978 CRISPR-as 40.2 43 0.00093 23.4 3.3 45 17-66 27-74 (87)
270 PF07045 DUF1330: Protein of u 40.1 1E+02 0.0022 19.8 5.5 43 31-75 10-57 (65)
271 cd04908 ACT_Bt0572_1 N-termina 40.1 97 0.0021 19.7 7.8 45 28-76 14-59 (66)
272 PRK12866 YciI-like protein; Re 40.1 1.3E+02 0.0029 21.2 7.0 27 58-85 50-76 (97)
273 cd04929 ACT_TPH ACT domain of 39.8 1.1E+02 0.0025 20.3 7.9 51 28-79 13-65 (74)
274 COG5470 Uncharacterized conser 39.5 46 0.001 23.6 3.3 19 56-74 52-70 (96)
275 COG5584 Predicted small secret 39.4 56 0.0012 23.2 3.7 30 22-51 29-58 (103)
276 PRK06545 prephenate dehydrogen 39.3 1.7E+02 0.0036 26.0 7.8 65 13-80 288-354 (359)
277 PF00398 RrnaAD: Ribosomal RNA 39.2 29 0.00063 29.3 2.9 23 15-37 97-119 (262)
278 PF12687 DUF3801: Protein of u 38.9 70 0.0015 26.1 4.9 54 30-85 45-98 (204)
279 COG5236 Uncharacterized conser 38.8 76 0.0017 28.1 5.2 52 28-87 263-314 (493)
280 KOG2854 Possible pfkB family c 38.6 35 0.00075 30.0 3.2 64 13-76 158-231 (343)
281 PF01071 GARS_A: Phosphoribosy 38.6 61 0.0013 26.3 4.4 59 28-90 25-86 (194)
282 CHL00030 rpl23 ribosomal prote 37.9 89 0.0019 22.1 4.7 33 17-49 20-54 (93)
283 cd04881 ACT_HSDH-Hom ACT_HSDH_ 37.9 1.1E+02 0.0023 19.5 7.6 59 18-80 3-66 (79)
284 smart00738 NGN In Spt5p, this 37.7 58 0.0013 22.9 3.9 24 57-80 59-82 (106)
285 KOG2855 Ribokinase [Carbohydra 37.3 60 0.0013 28.6 4.5 46 15-64 61-107 (330)
286 PF05336 DUF718: Domain of unk 37.3 96 0.0021 22.3 4.9 44 29-75 25-68 (106)
287 TIGR00587 nfo apurinic endonuc 37.3 46 0.001 28.3 3.8 58 15-78 137-202 (274)
288 PF04026 SpoVG: SpoVG; InterP 37.2 52 0.0011 22.8 3.3 26 41-66 2-27 (84)
289 cd04876 ACT_RelA-SpoT ACT dom 37.2 94 0.002 18.7 6.7 49 28-79 11-62 (71)
290 KOG1719 Dual specificity phosp 37.1 83 0.0018 24.7 4.7 28 65-92 90-117 (183)
291 cd06407 PB1_NLP A PB1 domain i 36.6 1.4E+02 0.003 20.4 6.1 56 18-78 11-69 (82)
292 PRK11863 N-acetyl-gamma-glutam 36.6 1E+02 0.0022 27.0 5.8 33 16-48 210-245 (313)
293 cd00127 DSPc Dual specificity 36.5 94 0.002 22.8 5.1 17 17-33 8-24 (139)
294 PF01037 AsnC_trans_reg: AsnC 36.4 1.2E+02 0.0025 19.5 7.7 45 28-76 11-55 (74)
295 PRK00907 hypothetical protein; 36.2 1.5E+02 0.0033 20.8 6.3 65 15-80 17-85 (92)
296 PRK12450 foldase protein PrsA; 35.7 70 0.0015 27.8 4.7 39 26-78 132-170 (309)
297 PRK13259 regulatory protein Sp 34.7 59 0.0013 23.1 3.3 26 41-66 2-27 (94)
298 PF12007 DUF3501: Protein of u 34.6 45 0.00099 27.0 3.1 46 28-80 65-110 (192)
299 PF13820 Nucleic_acid_bd: Puta 34.4 55 0.0012 25.3 3.4 61 15-79 4-67 (149)
300 PRK00274 ksgA 16S ribosomal RN 34.4 50 0.0011 28.1 3.5 22 17-38 107-128 (272)
301 COG0018 ArgS Arginyl-tRNA synt 34.2 1.2E+02 0.0026 29.1 6.3 62 28-98 59-130 (577)
302 cd04905 ACT_CM-PDT C-terminal 33.9 1.4E+02 0.0031 19.7 7.5 51 28-79 14-68 (80)
303 cd02116 ACT ACT domains are co 33.9 92 0.002 17.5 7.4 48 28-77 11-59 (60)
304 KOG0151 Predicted splicing reg 33.8 48 0.001 32.2 3.5 12 60-71 695-706 (877)
305 PF06014 DUF910: Bacterial pro 33.7 33 0.00072 22.3 1.8 18 28-45 3-20 (62)
306 PTZ00338 dimethyladenosine tra 33.4 48 0.001 28.7 3.3 23 16-38 102-124 (294)
307 COG0079 HisC Histidinol-phosph 33.4 57 0.0012 29.0 3.9 51 14-75 145-199 (356)
308 TIGR00755 ksgA dimethyladenosi 33.1 53 0.0012 27.4 3.5 24 17-40 96-119 (253)
309 PF14401 RLAN: RimK-like ATPgr 33.1 66 0.0014 25.0 3.7 60 14-73 86-146 (153)
310 KOG1635 Peptide methionine sul 32.1 1.3E+02 0.0028 24.0 5.1 73 16-91 76-150 (191)
311 cd01611 GABARAP Ubiquitin doma 32.0 81 0.0018 23.1 3.8 16 23-38 47-62 (112)
312 PF12829 Mhr1: Transcriptional 32.0 1.3E+02 0.0028 21.2 4.6 53 23-79 20-73 (91)
313 TIGR00110 ilvD dihydroxy-acid 31.8 2.4E+02 0.0053 26.7 7.7 36 57-95 383-418 (535)
314 COG3266 DamX Uncharacterized p 31.3 1.6E+02 0.0035 25.2 5.9 61 14-79 210-272 (292)
315 PF01762 Galactosyl_T: Galacto 31.3 65 0.0014 25.6 3.6 36 14-49 20-58 (195)
316 PF06919 Phage_T4_Gp30_7: Phag 31.2 62 0.0013 23.4 2.9 41 38-92 28-68 (121)
317 PLN02968 Probable N-acetyl-gam 30.9 73 0.0016 28.7 4.1 26 23-48 285-311 (381)
318 PF11061 DUF2862: Protein of u 30.9 1E+02 0.0022 20.2 3.7 40 21-67 10-52 (64)
319 PF13193 AMP-binding_C: AMP-bi 30.9 1.5E+02 0.0033 19.1 5.0 52 31-83 1-54 (73)
320 smart00650 rADc Ribosomal RNA 30.8 75 0.0016 24.6 3.8 23 16-38 78-100 (169)
321 COG1839 Uncharacterized conser 30.7 2.5E+02 0.0055 21.6 6.3 28 12-39 12-39 (162)
322 COG4471 Uncharacterized protei 30.7 1.2E+02 0.0025 21.3 4.1 39 34-81 20-58 (90)
323 PF08538 DUF1749: Protein of u 30.6 50 0.0011 28.8 2.9 60 13-77 32-97 (303)
324 cd04882 ACT_Bt0572_2 C-termina 30.4 1.4E+02 0.0029 18.4 5.5 46 29-76 13-59 (65)
325 KOG0226 RNA-binding proteins [ 30.3 23 0.0005 29.9 0.8 75 15-90 96-173 (290)
326 PF09345 DUF1987: Domain of un 30.3 1.8E+02 0.0038 20.8 5.2 23 72-94 64-86 (99)
327 KOG4357 Uncharacterized conser 30.1 2.4E+02 0.0052 21.2 6.2 25 59-83 115-139 (164)
328 PF09180 ProRS-C_1: Prolyl-tRN 29.8 47 0.001 21.9 2.1 28 58-85 12-39 (68)
329 KOG4806 Uncharacterized conser 29.8 82 0.0018 28.1 4.0 33 4-39 347-379 (454)
330 COG1369 POP5 RNase P/RNase MRP 29.4 2.1E+02 0.0045 21.4 5.6 66 25-93 27-101 (124)
331 cd04874 ACT_Af1403 N-terminal 29.3 1.5E+02 0.0032 18.5 7.1 48 28-78 13-61 (72)
332 PF11411 DNA_ligase_IV: DNA li 29.3 43 0.00094 19.2 1.5 17 25-41 19-35 (36)
333 PRK10672 rare lipoprotein A; P 29.3 1.7E+02 0.0038 26.1 6.0 62 14-82 288-352 (361)
334 PF06342 DUF1057: Alpha/beta h 29.2 2.7E+02 0.006 24.1 7.0 83 15-99 36-119 (297)
335 PRK00911 dihydroxy-acid dehydr 29.1 2.9E+02 0.0062 26.4 7.7 37 56-95 397-433 (552)
336 KOG3346 Phosphatidylethanolami 28.8 1.9E+02 0.004 23.3 5.7 47 12-67 83-131 (185)
337 cd04917 ACT_AKiii-LysC-EC_2 AC 28.6 1.3E+02 0.0027 18.9 4.0 20 63-82 44-63 (64)
338 PF05573 NosL: NosL; InterPro 28.6 18 0.00038 27.9 -0.2 21 57-77 114-134 (149)
339 PRK14093 UDP-N-acetylmuramoyla 28.3 1.7E+02 0.0037 27.0 6.3 59 27-90 308-375 (479)
340 KOG2943 Predicted glyoxalase [ 28.0 1.2E+02 0.0027 25.5 4.6 38 43-81 196-237 (299)
341 TIGR00401 msrA methionine-S-su 27.7 2.3E+02 0.005 21.8 5.9 75 17-94 53-131 (149)
342 PLN02655 ent-kaurene oxidase 27.7 1E+02 0.0022 28.2 4.7 49 19-76 9-60 (466)
343 PF14111 DUF4283: Domain of un 27.7 65 0.0014 24.3 2.9 34 16-49 105-139 (153)
344 cd06401 PB1_TFG The PB1 domain 27.6 1.9E+02 0.0042 19.9 4.8 44 27-75 21-69 (81)
345 PRK04405 prsA peptidylprolyl i 27.1 1.2E+02 0.0025 26.4 4.6 40 26-79 128-167 (298)
346 PRK12757 cell division protein 27.1 1.6E+02 0.0035 25.0 5.3 67 14-87 183-251 (256)
347 PTZ00363 rab-GDP dissociation 27.1 2E+02 0.0043 26.5 6.4 35 12-46 347-382 (443)
348 COG0217 Uncharacterized conser 27.1 1.9E+02 0.0042 24.2 5.6 14 27-40 147-160 (241)
349 cd04894 ACT_ACR-like_1 ACT dom 27.0 1.9E+02 0.0041 19.0 4.5 40 21-66 5-46 (69)
350 PF08206 OB_RNB: Ribonuclease 26.9 15 0.00033 23.3 -0.7 36 57-93 8-44 (58)
351 PF02617 ClpS: ATP-dependent C 26.8 63 0.0014 21.9 2.4 72 14-90 5-81 (82)
352 PRK12933 secD preprotein trans 26.7 3.4E+02 0.0074 26.2 7.9 77 12-96 37-115 (604)
353 PF11004 Kdo_hydroxy: 3-deoxy- 26.6 86 0.0019 26.9 3.5 44 12-58 18-64 (281)
354 PRK10927 essential cell divisi 26.5 1.5E+02 0.0032 26.0 5.0 69 14-87 246-314 (319)
355 PRK03717 ribonuclease P protei 26.5 2.7E+02 0.0058 20.6 5.8 33 58-92 66-100 (120)
356 cd04886 ACT_ThrD-II-like C-ter 26.5 1.7E+02 0.0036 18.2 7.2 51 28-78 11-65 (73)
357 PHA01632 hypothetical protein 26.5 66 0.0014 20.4 2.1 21 18-38 19-39 (64)
358 TIGR00136 gidA glucose-inhibit 26.3 1.2E+02 0.0026 29.3 4.8 66 13-85 297-365 (617)
359 PF10905 DUF2695: Protein of u 26.3 74 0.0016 20.0 2.4 24 26-49 29-52 (53)
360 COG0002 ArgC Acetylglutamate s 26.1 72 0.0016 28.3 3.1 46 23-68 253-304 (349)
361 PF06804 Lipoprotein_18: NlpB/ 26.1 1.4E+02 0.0031 25.9 5.0 48 14-69 197-245 (303)
362 PF15643 Tox-PL-2: Papain fold 25.8 68 0.0015 23.0 2.4 31 61-91 16-46 (100)
363 PF08442 ATP-grasp_2: ATP-gras 25.5 1.2E+02 0.0025 24.8 4.1 53 27-83 25-81 (202)
364 PF01693 Cauli_VI: Caulimoviru 25.4 1.3E+02 0.0029 17.7 3.4 16 58-73 29-44 (44)
365 PRK07868 acyl-CoA synthetase; 25.2 4.1E+02 0.0088 27.2 8.8 57 26-82 868-929 (994)
366 PF15063 TC1: Thyroid cancer p 25.2 42 0.00091 22.7 1.2 27 16-42 26-52 (79)
367 PRK06737 acetolactate synthase 25.2 2.2E+02 0.0048 19.2 7.1 63 15-80 4-67 (76)
368 PLN00110 flavonoid 3',5'-hydro 24.9 1.4E+02 0.0031 27.6 5.1 49 19-76 41-91 (504)
369 PHA02131 hypothetical protein 24.8 1.2E+02 0.0026 19.2 3.1 28 37-66 10-37 (70)
370 cd06406 PB1_P67 A PB1 domain i 24.8 1.3E+02 0.0029 20.6 3.6 57 18-80 12-71 (80)
371 TIGR01033 DNA-binding regulato 24.7 2.5E+02 0.0055 23.5 6.0 44 15-65 94-143 (238)
372 KOG0918 Selenium-binding prote 24.6 51 0.0011 29.9 1.9 63 13-75 398-461 (476)
373 PF12993 DUF3877: Domain of un 24.2 1.1E+02 0.0024 24.2 3.5 21 25-45 107-127 (175)
374 PF04008 Adenosine_kin: Adenos 24.1 2.1E+02 0.0046 22.1 4.9 29 12-40 5-33 (155)
375 COG0769 MurE UDP-N-acetylmuram 23.4 2.8E+02 0.0061 25.8 6.7 60 25-93 304-368 (475)
376 cd04883 ACT_AcuB C-terminal AC 23.4 2E+02 0.0044 18.1 8.1 47 28-76 14-63 (72)
377 cd04931 ACT_PAH ACT domain of 23.1 2.7E+02 0.0058 19.4 8.5 49 28-78 27-79 (90)
378 COG5594 Uncharacterized integr 23.1 90 0.0019 30.9 3.4 36 57-92 357-393 (827)
379 PF07521 RMMBL: RNA-metabolisi 23.0 1.6E+02 0.0036 17.2 3.4 32 16-48 7-38 (43)
380 PF09702 Cas_Csa5: CRISPR-asso 23.0 95 0.002 22.4 2.7 24 12-38 61-84 (105)
381 TIGR00719 sda_beta L-serine de 22.9 3E+02 0.0066 22.3 6.1 39 13-51 146-185 (208)
382 PLN00168 Cytochrome P450; Prov 22.9 1.9E+02 0.0042 26.8 5.6 51 17-76 43-98 (519)
383 PF09507 CDC27: DNA polymerase 22.8 36 0.00078 30.7 0.7 59 22-80 13-83 (430)
384 PRK13011 formyltetrahydrofolat 22.7 1.9E+02 0.0041 24.9 5.1 61 22-83 56-116 (286)
385 KOG3062 RNA polymerase II elon 22.6 1.9E+02 0.0041 24.4 4.7 35 17-51 3-40 (281)
386 cd06398 PB1_Joka2 The PB1 doma 22.6 2.8E+02 0.006 19.4 7.1 47 26-77 24-73 (91)
387 cd04930 ACT_TH ACT domain of t 22.5 3.2E+02 0.0069 20.0 8.8 50 28-79 54-106 (115)
388 PF02222 ATP-grasp: ATP-grasp 22.5 2.1E+02 0.0045 22.6 4.9 49 27-79 15-63 (172)
389 cd06402 PB1_p62 The PB1 domain 22.4 2.8E+02 0.006 19.3 6.6 57 17-78 17-76 (87)
390 PF06130 PduL: Propanediol uti 22.4 2.2E+02 0.0047 19.0 4.2 30 18-47 4-33 (71)
391 PF10087 DUF2325: Uncharacteri 22.3 2.8E+02 0.006 19.3 6.1 24 17-42 2-25 (97)
392 TIGR01743 purR_Bsub pur operon 22.3 1.9E+02 0.0042 24.7 4.9 41 31-78 44-86 (268)
393 COG3102 Uncharacterized protei 22.2 89 0.0019 24.8 2.6 42 57-98 109-154 (185)
394 KOG3772 M-phase inducer phosph 22.1 2E+02 0.0044 25.3 5.1 66 26-93 157-230 (325)
395 PF01823 MACPF: MAC/Perforin d 22.0 76 0.0016 25.3 2.4 29 20-48 53-84 (212)
396 PRK10162 acetyl esterase; Prov 21.9 2.5E+02 0.0055 24.2 5.8 56 16-77 251-308 (318)
397 PF12419 DUF3670: SNF2 Helicas 21.9 2.6E+02 0.0057 21.1 5.2 49 16-79 75-123 (141)
398 PLN02516 methylenetetrahydrofo 21.9 81 0.0017 27.5 2.6 25 15-39 68-92 (299)
399 COG4274 Uncharacterized conser 21.7 3.1E+02 0.0068 19.7 5.2 41 30-74 33-74 (104)
400 PRK09213 pur operon repressor; 21.6 1.9E+02 0.0041 24.8 4.8 42 30-78 45-88 (271)
401 KOG2888 Putative RNA binding p 21.5 66 0.0014 28.3 2.0 9 57-65 160-168 (453)
402 cd04489 ExoVII_LU_OBF ExoVII_L 21.1 38 0.00083 22.3 0.4 10 58-67 17-26 (78)
403 COG4483 Uncharacterized protei 21.0 79 0.0017 20.8 1.8 17 28-44 3-19 (68)
404 PF05606 DUF777: Borrelia burg 21.0 1.4E+02 0.003 23.6 3.4 64 15-78 4-71 (181)
405 PF02946 GTF2I: GTF2I-like rep 21.0 1.4E+02 0.003 20.3 3.0 30 16-45 35-72 (76)
406 PF02994 Transposase_22: L1 tr 21.0 2.5E+02 0.0054 25.2 5.6 77 16-92 191-287 (370)
407 PHA03075 glutaredoxin-like pro 21.0 1.6E+02 0.0034 21.9 3.5 33 30-65 57-89 (123)
408 PF14268 YoaP: YoaP-like 20.9 71 0.0015 19.2 1.5 33 60-92 3-37 (44)
409 KOG2671 Putative RNA methylase 20.9 1.2E+02 0.0027 27.1 3.5 53 18-75 5-58 (421)
410 PF13037 DUF3898: Domain of un 20.9 56 0.0012 22.7 1.2 51 27-77 31-89 (91)
411 COG2088 SpoVG Uncharacterized 20.9 1.2E+02 0.0027 21.2 2.8 27 41-67 2-28 (95)
412 PRK10280 dipeptidyl carboxypep 20.9 83 0.0018 30.8 2.7 51 15-67 441-503 (681)
413 COG3227 LasB Zinc metalloprote 20.8 2.1E+02 0.0046 26.6 5.1 59 25-94 49-107 (507)
414 KOG1196 Predicted NAD-dependen 20.8 3.2E+02 0.0068 24.1 5.9 73 13-86 221-307 (343)
415 cd01612 APG12_C Ubiquitin-like 20.7 2.4E+02 0.0053 19.5 4.4 15 23-37 22-36 (87)
416 TIGR01228 hutU urocanate hydra 20.7 3.6E+02 0.0078 25.4 6.5 66 13-85 87-159 (545)
417 PF04940 BLUF: Sensors of blue 20.7 2.2E+02 0.0047 19.9 4.2 35 16-50 3-43 (93)
418 COG0375 HybF Zn finger protein 20.6 3.6E+02 0.0078 19.9 6.6 54 31-94 13-69 (115)
419 PRK00453 rpsF 30S ribosomal pr 20.5 3.3E+02 0.0071 19.4 5.8 53 23-75 10-76 (108)
420 TIGR01851 argC_other N-acetyl- 20.5 2E+02 0.0042 25.3 4.7 26 23-48 220-246 (310)
421 cd08041 OBF_kDNA_ligase_like T 20.5 2E+02 0.0043 19.1 3.9 27 22-49 35-61 (77)
422 cd01174 ribokinase Ribokinase 20.4 3E+02 0.0065 23.0 5.9 26 16-41 52-77 (292)
423 COG1058 CinA Predicted nucleot 20.3 3.1E+02 0.0066 23.3 5.7 63 15-79 180-244 (255)
424 smart00434 TOP4c DNA Topoisome 20.3 2.2E+02 0.0047 26.4 5.2 59 16-75 233-295 (445)
425 KOG1150 Predicted molecular ch 20.2 80 0.0017 25.8 2.1 28 20-51 58-85 (250)
426 PF11215 DUF3010: Protein of u 20.2 1.1E+02 0.0024 23.3 2.7 52 23-79 37-94 (138)
427 PLN02936 epsilon-ring hydroxyl 20.1 82 0.0018 29.1 2.5 41 27-76 37-77 (489)
No 1
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.93 E-value=1e-24 Score=171.49 Aligned_cols=99 Identities=53% Similarity=0.835 Sum_probs=91.3
Q ss_pred CCCCCCCCCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC
Q 025549 1 MSHFGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
|++.+. ||++...++|.|-||.+.++.++|..+|++||.|..|.|+.+..+++.+|||||.|.+..+|++||++|+|.
T Consensus 1 MS~g~~--PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~ 78 (256)
T KOG4207|consen 1 MSYGRP--PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGA 78 (256)
T ss_pred CCCCCC--CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcce
Confidence 666553 778888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceEEEEeccCCCchhhh
Q 025549 81 VVDGREITVQFAKYGPNAEKI 101 (251)
Q Consensus 81 ~i~g~~l~v~~a~~~~~~~~~ 101 (251)
+|+|..|.|++|+........
T Consensus 79 ~ldgRelrVq~arygr~~d~~ 99 (256)
T KOG4207|consen 79 VLDGRELRVQMARYGRPSDLP 99 (256)
T ss_pred eeccceeeehhhhcCCCcccc
Confidence 999999999999987765443
No 2
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1.3e-21 Score=150.30 Aligned_cols=79 Identities=33% Similarity=0.542 Sum_probs=73.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025549 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
-.+.|||+||+..+++.||+.+|..||.|..|+|..++. |||||||++..+|++|+..|+|..|+|..|.|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP-----GfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP-----GFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC-----CceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 378999999999999999999999999999999988654 999999999999999999999999999999999998
Q ss_pred CCCc
Q 025549 94 YGPN 97 (251)
Q Consensus 94 ~~~~ 97 (251)
..+.
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6554
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=2.4e-20 Score=144.26 Aligned_cols=86 Identities=34% Similarity=0.548 Sum_probs=80.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
....+|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|+.||+.||+..|+|+.|.|+|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCch
Q 025549 93 KYGPNA 98 (251)
Q Consensus 93 ~~~~~~ 98 (251)
...+..
T Consensus 112 ~~~~~~ 117 (144)
T PLN03134 112 NDRPSA 117 (144)
T ss_pred CcCCCC
Confidence 865443
No 4
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.78 E-value=4.4e-19 Score=130.88 Aligned_cols=92 Identities=28% Similarity=0.541 Sum_probs=86.2
Q ss_pred CCCCCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCC
Q 025549 5 GKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (251)
Q Consensus 5 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g 84 (251)
+.+||...-++++|||++|+.++|+++|.+.|..||+|++|.|..+..+|..+|||+|+|++.++|++||.+|||..|.|
T Consensus 62 ~~pgPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~ 141 (170)
T KOG0130|consen 62 MRPGPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG 141 (170)
T ss_pred cCCCCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC
Confidence 34667777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccCCC
Q 025549 85 REITVQFAKYGP 96 (251)
Q Consensus 85 ~~l~v~~a~~~~ 96 (251)
+.|.|.||-...
T Consensus 142 q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 142 QNVSVDWCFVKG 153 (170)
T ss_pred CceeEEEEEecC
Confidence 999999997543
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.77 E-value=3.2e-18 Score=150.18 Aligned_cols=85 Identities=28% Similarity=0.464 Sum_probs=80.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025549 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
.+....++|||+|||+++|+++|+++|..||+|+.|.|+.+..++.++|||||+|.++++|+.||+.||+..|.+++|.|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccC
Q 025549 90 QFAKY 94 (251)
Q Consensus 90 ~~a~~ 94 (251)
.|+++
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 99865
No 6
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=8.3e-17 Score=133.36 Aligned_cols=82 Identities=32% Similarity=0.555 Sum_probs=78.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
.+-+||||+-|+++++|..|+..|..||+|+.|.|+.++.+|+++|||||+|+++.+++.|.+..+|.+|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cC
Q 025549 93 KY 94 (251)
Q Consensus 93 ~~ 94 (251)
..
T Consensus 179 Rg 180 (335)
T KOG0113|consen 179 RG 180 (335)
T ss_pred cc
Confidence 53
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.76 E-value=4.1e-18 Score=150.67 Aligned_cols=84 Identities=31% Similarity=0.481 Sum_probs=79.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
..+++|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|..||+.|||..|+|+.|.|.|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 34568999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCC
Q 025549 93 KYGP 96 (251)
Q Consensus 93 ~~~~ 96 (251)
..+.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 7554
No 8
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=7.3e-18 Score=123.36 Aligned_cols=88 Identities=27% Similarity=0.491 Sum_probs=80.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
...+||||+||.+.++|++|.++|..+|+|..|.|-.++.+..++|||||+|...++|+.||..++|+.|+..+|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCchhh
Q 025549 93 KYGPNAEK 100 (251)
Q Consensus 93 ~~~~~~~~ 100 (251)
..=....+
T Consensus 114 ~GF~eGRQ 121 (153)
T KOG0121|consen 114 AGFVEGRQ 121 (153)
T ss_pred ccchhhhh
Confidence 64433333
No 9
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.74 E-value=1.2e-17 Score=112.98 Aligned_cols=70 Identities=33% Similarity=0.697 Sum_probs=66.7
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025549 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
|||+|||..+++++|.++|.+||.|..|.|..+ .++...+||||+|.+.++|+.||+.|+|..|+|+.|.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 899999999999999999999999999999887 6788999999999999999999999999999999874
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.72 E-value=2.3e-17 Score=145.88 Aligned_cols=82 Identities=29% Similarity=0.519 Sum_probs=78.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
..+|||+|||..+++++|+++|..||+|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|.|+.|.|.|+++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 56899999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred CC
Q 025549 95 GP 96 (251)
Q Consensus 95 ~~ 96 (251)
..
T Consensus 83 ~~ 84 (352)
T TIGR01661 83 SS 84 (352)
T ss_pred cc
Confidence 43
No 11
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=3.1e-17 Score=132.47 Aligned_cols=84 Identities=33% Similarity=0.559 Sum_probs=80.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025549 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
-.+.++|-|.||+.++++++|.++|..||.|..|.|..++.+|.++|||||.|.+.++|++||..|||.-++.-.|.|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 025549 92 AKYG 95 (251)
Q Consensus 92 a~~~ 95 (251)
+++.
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9875
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.69 E-value=1.6e-16 Score=139.54 Aligned_cols=84 Identities=37% Similarity=0.575 Sum_probs=77.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCC--ceEEEEe
Q 025549 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG--REITVQF 91 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g--~~l~v~~ 91 (251)
..++|||+|||+.+|+++|+++|.+||+|+.|.|+.++.+++.+|||||+|.+.++|++||+.||+..|.+ .+|.|.|
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999998899999999999999999999999999998865 6899999
Q ss_pred ccCCCc
Q 025549 92 AKYGPN 97 (251)
Q Consensus 92 a~~~~~ 97 (251)
|+....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 976443
No 13
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.67 E-value=3.4e-16 Score=106.17 Aligned_cols=70 Identities=34% Similarity=0.706 Sum_probs=64.5
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025549 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
|||+|||+.+++++|.++|..||.|..|.+..++. +..+++|||+|.+.++|+.|++.+++..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 88999999999999999999999999999999874
No 14
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=1.5e-17 Score=128.75 Aligned_cols=85 Identities=32% Similarity=0.602 Sum_probs=80.3
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025549 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
.....+..-|||||||+++|+.||..+|.+||+|+.|.|+.++.||+++||||+.|++.....-|+..|||..|.|+.|.
T Consensus 29 H~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtir 108 (219)
T KOG0126|consen 29 HQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIR 108 (219)
T ss_pred hhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEE
Confidence 44567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecc
Q 025549 89 VQFAK 93 (251)
Q Consensus 89 v~~a~ 93 (251)
|....
T Consensus 109 VDHv~ 113 (219)
T KOG0126|consen 109 VDHVS 113 (219)
T ss_pred eeecc
Confidence 98764
No 15
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=3.9e-16 Score=125.67 Aligned_cols=79 Identities=27% Similarity=0.572 Sum_probs=73.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
-++||||||+|++..++|..+|++||+|++..|+.|+.+|.++||+||+|.+.+.|..|++. -.-.|+|++..|++|-.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 46899999999999999999999999999999999999999999999999999999999984 44678999999999864
No 16
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.65 E-value=9.8e-16 Score=127.07 Aligned_cols=76 Identities=21% Similarity=0.324 Sum_probs=70.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
.++|||+|||+.+++++|++||..||+|..|.|+.+.. ..|||||+|.+.++|+.||. |||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57899999999999999999999999999999987653 45999999999999999996 999999999999999863
No 17
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=1e-15 Score=119.00 Aligned_cols=81 Identities=26% Similarity=0.436 Sum_probs=73.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
...++|||+|||.++.+.+|+++|.+||.|.+|.|...+ .+..||||+|++..+|+.||..-+|..++|..|.|+|+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 457899999999999999999999999999999986543 23489999999999999999999999999999999999
Q ss_pred cCCC
Q 025549 93 KYGP 96 (251)
Q Consensus 93 ~~~~ 96 (251)
....
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 8765
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.64 E-value=1.1e-15 Score=141.49 Aligned_cols=83 Identities=25% Similarity=0.399 Sum_probs=78.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
....+|||+|||+.+++++|+++|..||.|..|.|+.+..+|.++|||||+|.+.++|+.||+.|||..|+|..|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34579999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred cCC
Q 025549 93 KYG 95 (251)
Q Consensus 93 ~~~ 95 (251)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 654
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.64 E-value=1.1e-15 Score=141.56 Aligned_cols=85 Identities=18% Similarity=0.352 Sum_probs=79.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025549 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
..++|||+|||+.+++++|+++|..||.|..|.|+.++.++..+|||||+|.+.++|..||+.||+..|+|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 35799999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred CCCch
Q 025549 94 YGPNA 98 (251)
Q Consensus 94 ~~~~~ 98 (251)
..+..
T Consensus 283 ~pP~~ 287 (612)
T TIGR01645 283 TPPDA 287 (612)
T ss_pred CCccc
Confidence 65533
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.63 E-value=1.8e-15 Score=138.45 Aligned_cols=80 Identities=36% Similarity=0.648 Sum_probs=76.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
..+|||+|||..+++++|+++|.+||.|..|.|+.+..+|..+|||||+|.+.++|+.||+.|||..|.|+.|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 68999999999999999999999999999999999988889999999999999999999999999999999999999863
No 21
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=1.1e-15 Score=128.25 Aligned_cols=81 Identities=41% Similarity=0.571 Sum_probs=74.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
.....|+|.|||+...+.||..||.+||.|..|.|+.+. -.+||||||+|++.++|++|-++|||..|.|++|.|..|
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 345789999999999999999999999999999999874 457899999999999999999999999999999999998
Q ss_pred cCC
Q 025549 93 KYG 95 (251)
Q Consensus 93 ~~~ 95 (251)
...
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 754
No 22
>smart00362 RRM_2 RNA recognition motif.
Probab=99.62 E-value=2.9e-15 Score=100.62 Aligned_cols=72 Identities=40% Similarity=0.741 Sum_probs=66.9
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025549 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
+|||.|||..+++++|.++|.+||.|..+.+..++ +.+.|+|||+|.+.++|+.|++.|++..|.|..|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988775 6788999999999999999999999999999998873
No 23
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.62 E-value=3.5e-15 Score=121.94 Aligned_cols=77 Identities=23% Similarity=0.321 Sum_probs=70.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
..+++|||+||++.+|+++|++||..||+|..|.|+.+. ...+||||+|.+.++|+.||. |+|..|.++.|.|..+
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 357899999999999999999999999999999999874 344899999999999999996 9999999999999876
Q ss_pred c
Q 025549 93 K 93 (251)
Q Consensus 93 ~ 93 (251)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 5
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.61 E-value=1.9e-15 Score=139.98 Aligned_cols=81 Identities=28% Similarity=0.535 Sum_probs=76.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
...++|||+||++.+++++|.++|.+||.|..|.|+.++.+|+++|||||+|.+.++|+.||+.|||..|+|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred c
Q 025549 93 K 93 (251)
Q Consensus 93 ~ 93 (251)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 25
>PLN03213 repressor of silencing 3; Provisional
Probab=99.61 E-value=2e-15 Score=132.76 Aligned_cols=79 Identities=25% Similarity=0.336 Sum_probs=72.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecH--HHHHHHHhhhCCCccCCceEEE
Q 025549 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYA--DEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~--~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
...+..||||||++.+++++|..+|..||.|..|.|+. .+| +|||||+|.+. .++++||..|||..|.|..|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 34568999999999999999999999999999999983 466 89999999987 7899999999999999999999
Q ss_pred EeccC
Q 025549 90 QFAKY 94 (251)
Q Consensus 90 ~~a~~ 94 (251)
+.|++
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 99975
No 26
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=4.7e-16 Score=123.91 Aligned_cols=85 Identities=29% Similarity=0.452 Sum_probs=80.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
....+|||++|..++++..|...|-.||.|+.|.|+.+..+++++|||||+|+..++|.+||..||+.+|.|+.|.|+||
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCc
Q 025549 93 KYGPN 97 (251)
Q Consensus 93 ~~~~~ 97 (251)
++...
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 87543
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.61 E-value=3.6e-15 Score=136.43 Aligned_cols=82 Identities=34% Similarity=0.560 Sum_probs=77.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025549 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
..+..+|||+|||..+++++|+++|.+||.|..|.|+.+..++..+|||||+|.+.++|++||. |+|..|.|.+|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457899999999999999999999999999999999999899999999999999999999998 999999999999998
Q ss_pred ccC
Q 025549 92 AKY 94 (251)
Q Consensus 92 a~~ 94 (251)
+..
T Consensus 165 ~~~ 167 (457)
T TIGR01622 165 SQA 167 (457)
T ss_pred cch
Confidence 754
No 28
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=5.2e-15 Score=104.56 Aligned_cols=83 Identities=31% Similarity=0.514 Sum_probs=74.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025549 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
+...+..|||.|||+.+|.+++.++|.+||.|..|.|-..+ ..+|.|||.|++..+|+.|+.+|+|..+++..|.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 34557899999999999999999999999999999997654 445999999999999999999999999999999999
Q ss_pred eccCCC
Q 025549 91 FAKYGP 96 (251)
Q Consensus 91 ~a~~~~ 96 (251)
|-.+..
T Consensus 91 yyq~~~ 96 (124)
T KOG0114|consen 91 YYQPED 96 (124)
T ss_pred ecCHHH
Confidence 876543
No 29
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=2.3e-15 Score=123.31 Aligned_cols=88 Identities=25% Similarity=0.528 Sum_probs=82.5
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025549 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
.+.....+-|||+.|..+++.++|++.|.+||+|.++.|+.|..+++++||+||.|.+.++|+.||+.|||.+|+++.|.
T Consensus 56 k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IR 135 (321)
T KOG0148|consen 56 KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIR 135 (321)
T ss_pred CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceee
Confidence 34445577899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 025549 89 VQFAKYGP 96 (251)
Q Consensus 89 v~~a~~~~ 96 (251)
.+||.-++
T Consensus 136 TNWATRKp 143 (321)
T KOG0148|consen 136 TNWATRKP 143 (321)
T ss_pred ccccccCc
Confidence 99998666
No 30
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.59 E-value=1.8e-15 Score=117.32 Aligned_cols=83 Identities=29% Similarity=0.479 Sum_probs=78.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025549 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
+.....||||+||+..++++.|.++|-+.|+|+.|.|+.+..+...+|||||+|.++++|+-||+.||...|.|++|.|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecc
Q 025549 91 FAK 93 (251)
Q Consensus 91 ~a~ 93 (251)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 876
No 31
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=5.9e-15 Score=128.34 Aligned_cols=80 Identities=33% Similarity=0.523 Sum_probs=75.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCcc-CCceEEEEe
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV-DGREITVQF 91 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i-~g~~l~v~~ 91 (251)
..++-|||+.||.++.|++|..||++.|+|.++.|+.++.+|.++|||||+|.+.++|+.||+.||+.+| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 5588999999999999999999999999999999999999999999999999999999999999999988 688887765
Q ss_pred c
Q 025549 92 A 92 (251)
Q Consensus 92 a 92 (251)
+
T Consensus 161 S 161 (506)
T KOG0117|consen 161 S 161 (506)
T ss_pred e
Confidence 5
No 32
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.59 E-value=6.2e-15 Score=138.22 Aligned_cols=79 Identities=25% Similarity=0.500 Sum_probs=75.7
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccCC
Q 025549 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 95 (251)
+|||+|||.++|+++|.++|.+||.|..|.|+.+..+++++|||||+|.+.++|+.||+.||+..|.|+.|.|.|+...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 6999999999999999999999999999999999989999999999999999999999999999999999999998643
No 33
>smart00360 RRM RNA recognition motif.
Probab=99.58 E-value=7e-15 Score=98.38 Aligned_cols=71 Identities=41% Similarity=0.738 Sum_probs=66.6
Q ss_pred EecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025549 20 VLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 20 V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
|+|||..+++++|+++|.+||.|..|.|..++.++.++|||||+|.+.++|+.|+..|++..|.|..|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999887778899999999999999999999999999999998873
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=6.7e-15 Score=120.65 Aligned_cols=78 Identities=27% Similarity=0.465 Sum_probs=73.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
.+.++|||+||+..+++++|.+.|..||.|.+|.|.+++ ||+||.|++.|.|..||..||+.+|.|+.|+|.|-
T Consensus 162 p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 162 PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred CCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 457899999999999999999999999999999999886 99999999999999999999999999999999999
Q ss_pred cCCC
Q 025549 93 KYGP 96 (251)
Q Consensus 93 ~~~~ 96 (251)
+...
T Consensus 236 Ke~~ 239 (321)
T KOG0148|consen 236 KEGD 239 (321)
T ss_pred ccCC
Confidence 8643
No 35
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.57 E-value=7.4e-15 Score=135.74 Aligned_cols=79 Identities=32% Similarity=0.481 Sum_probs=71.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccC-CceEEEEe
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD-GREITVQF 91 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~-g~~l~v~~ 91 (251)
..+++|||+|||+++++++|.++|.+||.|..|.|+.+ .+|.++|||||+|.+.++|+.||+.||+.+|. |+.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34689999999999999999999999999999999999 78999999999999999999999999998884 66665554
Q ss_pred c
Q 025549 92 A 92 (251)
Q Consensus 92 a 92 (251)
+
T Consensus 135 S 135 (578)
T TIGR01648 135 S 135 (578)
T ss_pred c
Confidence 4
No 36
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.56 E-value=3.4e-14 Score=95.91 Aligned_cols=74 Identities=43% Similarity=0.734 Sum_probs=68.1
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025549 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
+|+|+|||..+++++|.++|..||.|..+.+..+..+ ...++|||+|.+.++|+.|++.|++..+.|..|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999877543 6679999999999999999999999999999999874
No 37
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.56 E-value=1.5e-14 Score=135.60 Aligned_cols=84 Identities=30% Similarity=0.497 Sum_probs=78.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
..+.+|||+||++.+++++|+++|..||.|+.|.|+.+ .+|..+|||||+|.+.++|++||..|||..|+|++|.|.||
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34678999999999999999999999999999999988 58899999999999999999999999999999999999999
Q ss_pred cCCCc
Q 025549 93 KYGPN 97 (251)
Q Consensus 93 ~~~~~ 97 (251)
..+..
T Consensus 362 ~~k~~ 366 (562)
T TIGR01628 362 QRKEQ 366 (562)
T ss_pred cCcHH
Confidence 86543
No 38
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.55 E-value=2.5e-14 Score=132.20 Aligned_cols=78 Identities=33% Similarity=0.454 Sum_probs=71.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcC--CCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKY--GKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
....+|||+||++.+++++|+++|.+| |+|+.|.++. +||||+|++.++|++||+.||+.+|+|+.|.|.
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345789999999999999999999999 9999998764 699999999999999999999999999999999
Q ss_pred eccCCCch
Q 025549 91 FAKYGPNA 98 (251)
Q Consensus 91 ~a~~~~~~ 98 (251)
|+++....
T Consensus 303 ~Akp~~~~ 310 (578)
T TIGR01648 303 LAKPVDKK 310 (578)
T ss_pred EccCCCcc
Confidence 99876544
No 39
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.55 E-value=2.4e-14 Score=120.60 Aligned_cols=80 Identities=43% Similarity=0.719 Sum_probs=76.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
.++|||+|||+.+++++|.++|.+||.|..|.|..+..++..+|||||+|.+.++|+.||..|++..|.|..|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999753
No 40
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.54 E-value=1.7e-14 Score=128.80 Aligned_cols=86 Identities=30% Similarity=0.585 Sum_probs=81.7
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccCC
Q 025549 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 95 (251)
+.|||||||+++++++|..+|...|.|..+.++.|+.+|.++|||||+|.+.++|+.||+.|||.++.|.+|.|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred Cchhhh
Q 025549 96 PNAEKI 101 (251)
Q Consensus 96 ~~~~~~ 101 (251)
...+..
T Consensus 99 ~~~~~~ 104 (435)
T KOG0108|consen 99 KNAERS 104 (435)
T ss_pred chhHHH
Confidence 655443
No 41
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=6.2e-14 Score=114.47 Aligned_cols=86 Identities=28% Similarity=0.441 Sum_probs=80.1
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025549 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
.....++.|||-||.++++|..|+++|.+||.|..|+|+.|..+.+++||+||.+.+.++|..||..|||..++++.|.|
T Consensus 273 ~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQV 352 (360)
T KOG0145|consen 273 GGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 352 (360)
T ss_pred CCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEE
Confidence 33445899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCC
Q 025549 90 QFAKYG 95 (251)
Q Consensus 90 ~~a~~~ 95 (251)
.|...+
T Consensus 353 sFKtnk 358 (360)
T KOG0145|consen 353 SFKTNK 358 (360)
T ss_pred EEecCC
Confidence 997543
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.52 E-value=6.8e-14 Score=128.75 Aligned_cols=78 Identities=26% Similarity=0.333 Sum_probs=71.6
Q ss_pred CCCcEEEEecCCC-CCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025549 13 RDTYSLLVLNITF-RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 13 ~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
.++++|||+||++ .+++++|.++|+.||.|..|.|+.++ +|||||+|.+.++|+.||..|||..|.|+.|.|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 3568999999998 69999999999999999999998763 38999999999999999999999999999999999
Q ss_pred ccCC
Q 025549 92 AKYG 95 (251)
Q Consensus 92 a~~~ 95 (251)
++..
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 8654
No 43
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=7.9e-14 Score=113.87 Aligned_cols=82 Identities=30% Similarity=0.520 Sum_probs=77.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025549 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
..+.|+|.-||..+|+++|+.+|...|+|+.|+++.|+.+|++.||+||.|.+++||++||..|||..|..+.|+|.||.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 34578888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 025549 94 YG 95 (251)
Q Consensus 94 ~~ 95 (251)
+.
T Consensus 120 PS 121 (360)
T KOG0145|consen 120 PS 121 (360)
T ss_pred CC
Confidence 63
No 44
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=8.1e-14 Score=123.95 Aligned_cols=84 Identities=36% Similarity=0.697 Sum_probs=76.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
...|+|.||||.|...+|+.+|..||.|.+|.|+... .|..+|||||+|.+..+|..||+.||+.+|+|++|.|.||-.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 5789999999999999999999999999999998665 666679999999999999999999999999999999999976
Q ss_pred CCchh
Q 025549 95 GPNAE 99 (251)
Q Consensus 95 ~~~~~ 99 (251)
+...+
T Consensus 196 Kd~ye 200 (678)
T KOG0127|consen 196 KDTYE 200 (678)
T ss_pred ccccc
Confidence 55443
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.48 E-value=1.3e-13 Score=126.90 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=68.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhh--CCCccCCceEEEEec
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL--DGRVVDGREITVQFA 92 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~i~g~~l~v~~a 92 (251)
..+|||+|||+.+++++|.++|.+||.|..|.|+.++ +||||+|++.++|+.||+.| ++..|.|++|.|+|+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k------~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK------RQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC------CEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 5789999999999999999999999999999988643 89999999999999999974 678999999999998
Q ss_pred cCC
Q 025549 93 KYG 95 (251)
Q Consensus 93 ~~~ 95 (251)
...
T Consensus 76 ~~~ 78 (481)
T TIGR01649 76 TSQ 78 (481)
T ss_pred CCc
Confidence 643
No 46
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.5e-13 Score=122.21 Aligned_cols=90 Identities=33% Similarity=0.548 Sum_probs=80.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC-----C-CccCC
Q 025549 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD-----G-RVVDG 84 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-----g-~~i~g 84 (251)
....+.+|||.|||+++|+++|.++|.+||+|.++.|+.++.++.++|.|||.|.+..+|++||.+.. | ..|.|
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 44567899999999999999999999999999999999999999999999999999999999999772 3 56799
Q ss_pred ceEEEEeccCCCchhh
Q 025549 85 REITVQFAKYGPNAEK 100 (251)
Q Consensus 85 ~~l~v~~a~~~~~~~~ 100 (251)
+.|.|..|-+...+..
T Consensus 368 R~Lkv~~Av~RkeA~d 383 (678)
T KOG0127|consen 368 RLLKVTLAVTRKEAAD 383 (678)
T ss_pred cEEeeeeccchHHHHH
Confidence 9999999976554433
No 47
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.47 E-value=5.7e-14 Score=116.28 Aligned_cols=72 Identities=31% Similarity=0.506 Sum_probs=68.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccCC
Q 025549 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 95 (251)
.+|||+|||.++++++|+.+|++||+|++|+|+++ ||||..++...|+.||..|++.+|.|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999984 7999999999999999999999999999999988754
No 48
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=7e-14 Score=121.25 Aligned_cols=85 Identities=27% Similarity=0.487 Sum_probs=76.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC-cc--CCceEEE
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR-VV--DGREITV 89 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~i--~g~~l~v 89 (251)
.+.++|||+.|+..+||.+|.++|.+||.|++|.|+.+. .+.++|||||.|.+.+.|..||++|||. ++ +..+|+|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 347899999999999999999999999999999999985 7899999999999999999999999997 44 5679999
Q ss_pred EeccCCCch
Q 025549 90 QFAKYGPNA 98 (251)
Q Consensus 90 ~~a~~~~~~ 98 (251)
.||.+....
T Consensus 201 kFADtqkdk 209 (510)
T KOG0144|consen 201 KFADTQKDK 209 (510)
T ss_pred EecccCCCc
Confidence 999875543
No 49
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.6e-13 Score=119.58 Aligned_cols=78 Identities=35% Similarity=0.492 Sum_probs=71.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
..-..|||.||+..+|++.|+++|.+||.|+.|+.+. .||||.|.+.++|.+||+.|||.+|+|..|.|.+|
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r--------DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR--------DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHHHHhccceEEeeccc--------ceeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 3457899999999999999999999999999998775 48999999999999999999999999999999999
Q ss_pred cCCCch
Q 025549 93 KYGPNA 98 (251)
Q Consensus 93 ~~~~~~ 98 (251)
++....
T Consensus 329 KP~~k~ 334 (506)
T KOG0117|consen 329 KPVDKK 334 (506)
T ss_pred CChhhh
Confidence 986544
No 50
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.45 E-value=3.2e-13 Score=87.49 Aligned_cols=56 Identities=43% Similarity=0.861 Sum_probs=50.9
Q ss_pred HHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 32 LFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 32 L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
|.++|++||+|..|.+..+. .++|||+|.+.++|+.|++.|||..|.|++|.|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997654 489999999999999999999999999999999986
No 51
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1e-13 Score=117.51 Aligned_cols=84 Identities=31% Similarity=0.525 Sum_probs=79.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025549 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
..+..+|||..|.+.+|.++|.-+|..||.|..|.|+.+..+|....||||+|++.++|++|.-+|++..|++..|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 025549 92 AKYG 95 (251)
Q Consensus 92 a~~~ 95 (251)
+...
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 8643
No 52
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.45 E-value=4e-13 Score=116.79 Aligned_cols=85 Identities=31% Similarity=0.416 Sum_probs=76.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhh-cCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025549 12 IRDTYSLLVLNITFRTTADDLFPLFE-KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
......|||+|||+++.|++|+++|. +.|+|++|.|..+. .|+.+|+|.|+|+++|.+++|++.||...|.|++|+|.
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 34456699999999999999999995 78999999999885 89999999999999999999999999999999999998
Q ss_pred eccCCCc
Q 025549 91 FAKYGPN 97 (251)
Q Consensus 91 ~a~~~~~ 97 (251)
.....+.
T Consensus 120 Ed~d~q~ 126 (608)
T KOG4212|consen 120 EDHDEQR 126 (608)
T ss_pred ccCchhh
Confidence 7765433
No 53
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=2.5e-13 Score=117.88 Aligned_cols=83 Identities=31% Similarity=0.520 Sum_probs=75.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC-cc--CCceEEE
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR-VV--DGREITV 89 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~i--~g~~l~v 89 (251)
.+.-+|||+.||..++|.||+.+|++||.|.+|.|++|+.++..+|||||.|.+.++|.+||.+|++. +| ...+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 44578999999999999999999999999999999999999999999999999999999999999886 44 4578889
Q ss_pred EeccCC
Q 025549 90 QFAKYG 95 (251)
Q Consensus 90 ~~a~~~ 95 (251)
.||...
T Consensus 112 k~Ad~E 117 (510)
T KOG0144|consen 112 KYADGE 117 (510)
T ss_pred cccchh
Confidence 888643
No 54
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=1.4e-13 Score=112.74 Aligned_cols=85 Identities=21% Similarity=0.399 Sum_probs=80.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
.++|.|||-.||.++.+.||.++|-.||.|+..+|..|..+..+++|+||.|+|...|+.||.+|||..|+-+.|+|.+.
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCc
Q 025549 93 KYGPN 97 (251)
Q Consensus 93 ~~~~~ 97 (251)
.++..
T Consensus 363 RPkda 367 (371)
T KOG0146|consen 363 RPKDA 367 (371)
T ss_pred Ccccc
Confidence 76643
No 55
>smart00361 RRM_1 RNA recognition motif.
Probab=99.43 E-value=6e-13 Score=90.29 Aligned_cols=61 Identities=26% Similarity=0.501 Sum_probs=54.1
Q ss_pred HHHHHHHhh----cCCCeeEEE-EccCCCC--CCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025549 29 ADDLFPLFE----KYGKVVDVF-IPRDRRT--GDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 29 ~~~L~~~f~----~~G~i~~v~-i~~~~~~--g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
+++|.++|. +||.|..|. |+.++.+ +..+|||||+|.+.++|++||..|||..|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999985 5555555 889999999999999999999999999999999976
No 56
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.42 E-value=2e-13 Score=121.72 Aligned_cols=77 Identities=36% Similarity=0.628 Sum_probs=73.9
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025549 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
|||+||++++++++|..+|+.||.|..|.++.+..+|.++||+||+|.+.++|.+|++.|||.+|.|..|+|.....
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999887654
No 57
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=2.9e-13 Score=115.28 Aligned_cols=79 Identities=29% Similarity=0.567 Sum_probs=75.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
.|.||||.|.+++.++.|...|..||+|+.|.+.+++.+++++|||||+|+-+|.|+-|++.|||..++|+.|+|....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999998654
No 58
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.39 E-value=1.2e-12 Score=103.72 Aligned_cols=86 Identities=20% Similarity=0.384 Sum_probs=78.4
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcC-CCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025549 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKY-GKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
+.......+||..||..+.+.+|..+|.+| |.|..+.+..++.||.++|||||+|++.+.|+-|.+.||+..|.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344456689999999999999999999988 6788888889999999999999999999999999999999999999999
Q ss_pred EEeccCC
Q 025549 89 VQFAKYG 95 (251)
Q Consensus 89 v~~a~~~ 95 (251)
|.+..+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9998876
No 59
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.34 E-value=3.6e-12 Score=118.19 Aligned_cols=74 Identities=22% Similarity=0.337 Sum_probs=61.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcC------------CCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKY------------GKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~------------G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
....+|||+|||+.+|+++|.+||.+| +.|..|.+.. .+|||||+|.+.++|+.||. |||.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~------~kg~afVeF~~~e~A~~Al~-l~g~ 245 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK------EKNFAFLEFRTVEEATFAMA-LDSI 245 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC------CCCEEEEEeCCHHHHhhhhc-CCCe
Confidence 456799999999999999999999875 2344444433 35999999999999999995 9999
Q ss_pred ccCCceEEEEecc
Q 025549 81 VVDGREITVQFAK 93 (251)
Q Consensus 81 ~i~g~~l~v~~a~ 93 (251)
.|.|..|.|....
T Consensus 246 ~~~g~~l~v~r~~ 258 (509)
T TIGR01642 246 IYSNVFLKIRRPH 258 (509)
T ss_pred EeeCceeEecCcc
Confidence 9999999997543
No 60
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.32 E-value=6.2e-12 Score=101.18 Aligned_cols=85 Identities=28% Similarity=0.465 Sum_probs=75.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHH----HhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCce
Q 025549 11 DIRDTYSLLVLNITFRTTADDLFP----LFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~----~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 86 (251)
+..+..||||.||+..+..++|+. +|.+||+|..|.+.. +.+.+|-|||.|.+.+.|-.|+.+|+|..|.|++
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~ 81 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKP 81 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCch
Confidence 344555999999999999999887 999999999998764 5678899999999999999999999999999999
Q ss_pred EEEEeccCCCch
Q 025549 87 ITVQFAKYGPNA 98 (251)
Q Consensus 87 l~v~~a~~~~~~ 98 (251)
+.|+||+.+...
T Consensus 82 mriqyA~s~sdi 93 (221)
T KOG4206|consen 82 MRIQYAKSDSDI 93 (221)
T ss_pred hheecccCccch
Confidence 999999865544
No 61
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.31 E-value=2.2e-12 Score=107.01 Aligned_cols=75 Identities=32% Similarity=0.499 Sum_probs=70.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025549 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
.....+|+|+||.+.++.++|...|++||.|++|+|+. +|+||.|+-.++|..||..||+.+|.|+.++|++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 34678999999999999999999999999999999987 6899999999999999999999999999999999
Q ss_pred ccC
Q 025549 92 AKY 94 (251)
Q Consensus 92 a~~ 94 (251)
+..
T Consensus 147 sts 149 (346)
T KOG0109|consen 147 STS 149 (346)
T ss_pred ecc
Confidence 864
No 62
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.28 E-value=7.8e-12 Score=97.25 Aligned_cols=86 Identities=26% Similarity=0.449 Sum_probs=77.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeE-EEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025549 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVD-VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
....+..|||+||.+++++..|.+.|..||.|.. -.|+.++.+|.++|||||.|.+.+.+.+||..|||..++..+|.|
T Consensus 92 nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv 171 (203)
T KOG0131|consen 92 NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITV 171 (203)
T ss_pred cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEE
Confidence 3445688999999999999999999999998765 477888889999999999999999999999999999999999999
Q ss_pred EeccCCC
Q 025549 90 QFAKYGP 96 (251)
Q Consensus 90 ~~a~~~~ 96 (251)
.++.-..
T Consensus 172 ~ya~k~~ 178 (203)
T KOG0131|consen 172 SYAFKKD 178 (203)
T ss_pred EEEEecC
Confidence 9997443
No 63
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=1.7e-11 Score=103.92 Aligned_cols=85 Identities=21% Similarity=0.409 Sum_probs=74.0
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhh-CCCcc
Q 025549 4 FGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL-DGRVV 82 (251)
Q Consensus 4 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l-~g~~i 82 (251)
++.-.||....-.+|||+||...+++.+|.++|.+||+|..|.+.... ++|||+|.+.+.|+.|.+++ |...|
T Consensus 217 ~~~lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI 290 (377)
T KOG0153|consen 217 AGTLEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVI 290 (377)
T ss_pred ccccCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeee
Confidence 444556677778899999999999999999999999999999988765 78999999999999887764 55578
Q ss_pred CCceEEEEeccC
Q 025549 83 DGREITVQFAKY 94 (251)
Q Consensus 83 ~g~~l~v~~a~~ 94 (251)
+|..|.|.|..+
T Consensus 291 ~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 291 NGFRLKIKWGRP 302 (377)
T ss_pred cceEEEEEeCCC
Confidence 999999999987
No 64
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.23 E-value=2.2e-11 Score=112.50 Aligned_cols=75 Identities=28% Similarity=0.449 Sum_probs=70.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
.+||||++|+..++++||.++|+.||+|..|.|+.+. |+|||.+....+|++||.+|+...|.++.|+|.||-.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 4699999999999999999999999999999988765 8999999999999999999999999999999999964
Q ss_pred C
Q 025549 95 G 95 (251)
Q Consensus 95 ~ 95 (251)
.
T Consensus 495 ~ 495 (894)
T KOG0132|consen 495 K 495 (894)
T ss_pred C
Confidence 3
No 65
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=2.6e-11 Score=103.47 Aligned_cols=82 Identities=17% Similarity=0.344 Sum_probs=76.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
-+.|||..++++++++||+.+|+.||+|..|.+...+.++.++||+||+|.+......||..||-..|+|+.|.|.-+-.
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 36899999999999999999999999999999999998999999999999999999999999999999999999987754
Q ss_pred CC
Q 025549 95 GP 96 (251)
Q Consensus 95 ~~ 96 (251)
.+
T Consensus 290 PP 291 (544)
T KOG0124|consen 290 PP 291 (544)
T ss_pred CC
Confidence 44
No 66
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.22 E-value=3.1e-11 Score=105.17 Aligned_cols=77 Identities=29% Similarity=0.477 Sum_probs=69.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025549 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
..+..|+|||.|||+++||+.|++-|..||.|.++.|+. .|+.+| .|.|.++++|+.|+..|++..|.|+.|.|.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 356688999999999999999999999999999999965 455555 899999999999999999999999999998
Q ss_pred ec
Q 025549 91 FA 92 (251)
Q Consensus 91 ~a 92 (251)
|+
T Consensus 607 y~ 608 (608)
T KOG4212|consen 607 YF 608 (608)
T ss_pred eC
Confidence 74
No 67
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=1.1e-11 Score=113.55 Aligned_cols=87 Identities=31% Similarity=0.544 Sum_probs=79.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
..++.|+|.|||+.++..+|+.+|..||.|..|.|+.....+.+.|||||+|-+..+|..|+.+|..+.|.|+.|+++||
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 34679999999999999999999999999999999887556677999999999999999999999999999999999999
Q ss_pred cCCCchh
Q 025549 93 KYGPNAE 99 (251)
Q Consensus 93 ~~~~~~~ 99 (251)
+.....+
T Consensus 691 ~~d~~~e 697 (725)
T KOG0110|consen 691 KSDNTME 697 (725)
T ss_pred ccchHHH
Confidence 8765533
No 68
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=4.2e-11 Score=106.01 Aligned_cols=79 Identities=23% Similarity=0.558 Sum_probs=72.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
...|||.||++.++..+|.++|..||+|+.|.|..+. .| .+|| ||+|++++.|++||+.|||..+.|+.|.|.....
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 3449999999999999999999999999999999886 34 8899 9999999999999999999999999999988765
Q ss_pred CC
Q 025549 95 GP 96 (251)
Q Consensus 95 ~~ 96 (251)
..
T Consensus 153 ~~ 154 (369)
T KOG0123|consen 153 KE 154 (369)
T ss_pred hh
Confidence 43
No 69
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=1.7e-11 Score=99.35 Aligned_cols=72 Identities=28% Similarity=0.525 Sum_probs=67.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccCC
Q 025549 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 95 (251)
..|||++||+.+.+.+|+.||..||.|..|.|.. ||+||+|++..+|..||..||+..|+|..|.|+|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 3599999999999999999999999999998854 88999999999999999999999999999999999754
No 70
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.17 E-value=6.4e-11 Score=106.23 Aligned_cols=84 Identities=35% Similarity=0.489 Sum_probs=78.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
+..|||.+|...+...+|++||.+||+|+-..|+.+..+....+|+||++.+.++|.+||.+|+.++|.|+.|.|+-++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 56899999999999999999999999999999999888888889999999999999999999999999999999999986
Q ss_pred CCch
Q 025549 95 GPNA 98 (251)
Q Consensus 95 ~~~~ 98 (251)
.+..
T Consensus 485 Ep~G 488 (940)
T KOG4661|consen 485 EPGG 488 (940)
T ss_pred Cccc
Confidence 5543
No 71
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.15 E-value=1.3e-10 Score=96.29 Aligned_cols=80 Identities=29% Similarity=0.490 Sum_probs=73.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
.++|+|.|||+.|+++||+++|..||.++.+.|..++ .|...|.|-|.|...++|+.||+.||+..|+|..|.|+....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 4789999999999999999999999999998888875 888999999999999999999999999999999999988754
Q ss_pred C
Q 025549 95 G 95 (251)
Q Consensus 95 ~ 95 (251)
.
T Consensus 162 ~ 162 (243)
T KOG0533|consen 162 P 162 (243)
T ss_pred c
Confidence 3
No 72
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.15 E-value=1.3e-10 Score=99.99 Aligned_cols=72 Identities=21% Similarity=0.269 Sum_probs=57.6
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCC---CCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025549 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRT---GDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
+|.|.||.+.+|.++|+.||..+|+|.++.|+.+..+ ....-.|||.|.+.+.+..|.. |.++.|-+..|.|
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv 83 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIV 83 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEE
Confidence 8999999999999999999999999999998875432 2345689999999999998887 5555554444444
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=1e-10 Score=107.41 Aligned_cols=77 Identities=35% Similarity=0.613 Sum_probs=69.6
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCC---CcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025549 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTG---DSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g---~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
+|||.||++.+|.++|..+|..+|.|..|.|...+... .+.|||||+|.+.++|+.|++.|+|+.|+|+.|.|.++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 39999999999999999999999999999887654221 245999999999999999999999999999999999998
No 74
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.13 E-value=3.8e-10 Score=80.62 Aligned_cols=82 Identities=18% Similarity=0.346 Sum_probs=72.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhc--CCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccC----CceEEE
Q 025549 16 YSLLVLNITFRTTADDLFPLFEK--YGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD----GREITV 89 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~----g~~l~v 89 (251)
+||.|.|||...|.++|.+++.. .|....+.|+.|..++.+.|||||.|.+.+.|....+.++|..|. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999999964 477888999999889999999999999999999999999999874 677889
Q ss_pred EeccCCCc
Q 025549 90 QFAKYGPN 97 (251)
Q Consensus 90 ~~a~~~~~ 97 (251)
.||+.+..
T Consensus 82 ~yAriQG~ 89 (97)
T PF04059_consen 82 SYARIQGK 89 (97)
T ss_pred ehhHhhCH
Confidence 99875543
No 75
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=9.2e-11 Score=96.43 Aligned_cols=83 Identities=29% Similarity=0.514 Sum_probs=73.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC-ccC--CceEEEE
Q 025549 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR-VVD--GREITVQ 90 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~i~--g~~l~v~ 90 (251)
+..+|||+.|...-.|+||..+|..||.|.+|.+...+ .|..+|+|||.|.+..+|+.||..|+|. ++- ...|+|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 56789999999999999999999999999999998875 7899999999999999999999999997 443 4679999
Q ss_pred eccCCCc
Q 025549 91 FAKYGPN 97 (251)
Q Consensus 91 ~a~~~~~ 97 (251)
|+....+
T Consensus 97 ~ADTdkE 103 (371)
T KOG0146|consen 97 FADTDKE 103 (371)
T ss_pred eccchHH
Confidence 9976543
No 76
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=4e-11 Score=95.91 Aligned_cols=82 Identities=23% Similarity=0.237 Sum_probs=72.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025549 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
......||||+||-..++++-|.++|-+.|+|..|.|..+. .++.+ ||||.|+++....-|++.|||..+.+..|.|+
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 34457889999999999999999999999999999988765 55665 99999999999999999999999999999988
Q ss_pred eccC
Q 025549 91 FAKY 94 (251)
Q Consensus 91 ~a~~ 94 (251)
+-..
T Consensus 83 ~r~G 86 (267)
T KOG4454|consen 83 LRCG 86 (267)
T ss_pred cccC
Confidence 7643
No 77
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.08 E-value=5.4e-10 Score=99.57 Aligned_cols=84 Identities=23% Similarity=0.374 Sum_probs=70.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
....+|||.|||.+++..+|+++|..||.|+...|..-...++..+||||+|++.++++.||++ +...|++++|.|+..
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 4455699999999999999999999999998877665433445459999999999999999995 588899999999987
Q ss_pred cCCCc
Q 025549 93 KYGPN 97 (251)
Q Consensus 93 ~~~~~ 97 (251)
++...
T Consensus 365 ~~~~~ 369 (419)
T KOG0116|consen 365 RPGFR 369 (419)
T ss_pred ccccc
Confidence 76433
No 78
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.07 E-value=1.2e-10 Score=100.14 Aligned_cols=80 Identities=28% Similarity=0.515 Sum_probs=72.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025549 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
+.++|||++|+|+++++.|.++|.+||+|.+|.++.++.++..+||+||+|++.+...++|. .....|+|..|.+.-|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67899999999999999999999999999999999999999999999999999998888877 45567888888887775
Q ss_pred C
Q 025549 94 Y 94 (251)
Q Consensus 94 ~ 94 (251)
+
T Consensus 84 ~ 84 (311)
T KOG4205|consen 84 S 84 (311)
T ss_pred C
Confidence 4
No 79
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=6e-10 Score=98.73 Aligned_cols=75 Identities=31% Similarity=0.497 Sum_probs=70.1
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccCC
Q 025549 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 95 (251)
..|||| +.+|+.+|.++|..+|+|..|.|+.+. + +.|||||.|.++++|+.||+.||...|.|++|.|.|....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 899999999999999999999999997 5 9999999999999999999999999999999999998754
Q ss_pred C
Q 025549 96 P 96 (251)
Q Consensus 96 ~ 96 (251)
+
T Consensus 76 ~ 76 (369)
T KOG0123|consen 76 P 76 (369)
T ss_pred C
Confidence 4
No 80
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=99.04 E-value=3.6e-10 Score=93.72 Aligned_cols=82 Identities=29% Similarity=0.480 Sum_probs=77.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
.+...|||+||.+.+|.++|+.+|+.||.|..|.|..++..++++|||||+|.+.+.++.||. ||+..|.|..|.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 456789999999999999999999999999999999999999999999999999999999999 9999999999999988
Q ss_pred cCC
Q 025549 93 KYG 95 (251)
Q Consensus 93 ~~~ 95 (251)
...
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 754
No 81
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.01 E-value=2.5e-09 Score=85.96 Aligned_cols=86 Identities=15% Similarity=0.295 Sum_probs=70.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCC-CCCCcceEEEEEEecHHHHHHHHhhhCCCcc---CCceEEEE
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDR-RTGDSRGFAFVRYKYADEAQKAVDRLDGRVV---DGREITVQ 90 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i---~g~~l~v~ 90 (251)
-.||||.+||.++...+|..+|..|-..+.+.|...- ....++-+|||+|.+..+|++|+.+|||..| .+..|.|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 5799999999999999999999988656555554322 2223457999999999999999999999988 58999999
Q ss_pred eccCCCchhh
Q 025549 91 FAKYGPNAEK 100 (251)
Q Consensus 91 ~a~~~~~~~~ 100 (251)
+|+...+...
T Consensus 114 lAKSNtK~kr 123 (284)
T KOG1457|consen 114 LAKSNTKRKR 123 (284)
T ss_pred ehhcCccccc
Confidence 9987665443
No 82
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.00 E-value=4.1e-10 Score=96.82 Aligned_cols=84 Identities=30% Similarity=0.413 Sum_probs=76.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
+.+|||++||..+++++|+++|.+||.|..+.++.+..+...+||+||.|++++.+..++. +.-+.|+|+.|.|.-|.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 5699999999999999999999999999999999999999999999999999999999987 677899999999999977
Q ss_pred CCchh
Q 025549 95 GPNAE 99 (251)
Q Consensus 95 ~~~~~ 99 (251)
+....
T Consensus 176 k~~~~ 180 (311)
T KOG4205|consen 176 KEVMQ 180 (311)
T ss_pred hhhcc
Confidence 55443
No 83
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.96 E-value=2.1e-09 Score=91.40 Aligned_cols=85 Identities=24% Similarity=0.373 Sum_probs=74.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCee--------EEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCC
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVV--------DVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g 84 (251)
..+..|||.|||.++|.+++.++|.+||.|. .|.|..+. .|+.+|-|+|.|-..+.++-||+.|++..|.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 3456799999999999999999999999775 37777775 59999999999999999999999999999999
Q ss_pred ceEEEEeccCCCch
Q 025549 85 REITVQFAKYGPNA 98 (251)
Q Consensus 85 ~~l~v~~a~~~~~~ 98 (251)
+.|.|+.|+.....
T Consensus 211 ~~~rVerAkfq~Kg 224 (382)
T KOG1548|consen 211 KKLRVERAKFQMKG 224 (382)
T ss_pred cEEEEehhhhhhcc
Confidence 99999999865443
No 84
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=1.7e-08 Score=78.98 Aligned_cols=82 Identities=26% Similarity=0.419 Sum_probs=71.1
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCcc-
Q 025549 4 FGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV- 82 (251)
Q Consensus 4 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i- 82 (251)
.+..++|.....+.|.|.+||+..+|+||++++.+.|.|++..+..+ |++.|+|...++++.||..|+...+
T Consensus 104 gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 104 GGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred CcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 34456788888999999999999999999999999999999999887 7899999999999999999998866
Q ss_pred -CCceEEEEec
Q 025549 83 -DGREITVQFA 92 (251)
Q Consensus 83 -~g~~l~v~~a 92 (251)
.|....|.+-
T Consensus 177 seGe~~yirv~ 187 (241)
T KOG0105|consen 177 SEGETAYIRVR 187 (241)
T ss_pred CcCcEeeEEec
Confidence 4555555544
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=1.5e-09 Score=97.48 Aligned_cols=71 Identities=25% Similarity=0.525 Sum_probs=64.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
....+|+|.|||..|++++|..+|+.||+|..|..... ..|.+||+|.+..+|+.|+++|++..|.|+.|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 44679999999999999999999999999999766544 338999999999999999999999999999887
No 86
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.89 E-value=2.4e-09 Score=91.60 Aligned_cols=87 Identities=24% Similarity=0.338 Sum_probs=78.2
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCee--------EEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCc
Q 025549 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVV--------DVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV 81 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (251)
.......+|||.+||..+++++|.++|.++|.|. .|.|..++.|+..++-|.|.|++...|++||..+++..
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 3455677999999999999999999999999874 47788888999999999999999999999999999999
Q ss_pred cCCceEEEEeccCCC
Q 025549 82 VDGREITVQFAKYGP 96 (251)
Q Consensus 82 i~g~~l~v~~a~~~~ 96 (251)
|.+.+|+|.+|....
T Consensus 141 f~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRT 155 (351)
T ss_pred ccCCCchhhhhhhcc
Confidence 999999999887544
No 87
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=7.7e-09 Score=84.05 Aligned_cols=72 Identities=36% Similarity=0.644 Sum_probs=64.5
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025549 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
++....+.|+|.||+..+.|++|.++|.++|++.+..+.. +++||+|...++|..||..|++..|.++.|.|
T Consensus 94 ~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~--------~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 94 PPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARR--------NFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred CcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhc--------cccceeehhhhhhhhcchhccchhhcCceeee
Confidence 3456688999999999999999999999999996655422 68999999999999999999999999999999
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.81 E-value=4.7e-09 Score=94.86 Aligned_cols=87 Identities=24% Similarity=0.401 Sum_probs=79.8
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025549 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
......+.|||+|||..+++.+|.+++..||.+..+.++.+..+|.++||||.+|.+......|+..|||..+++.+|+|
T Consensus 284 ~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred CcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 33455678999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeccCCC
Q 025549 90 QFAKYGP 96 (251)
Q Consensus 90 ~~a~~~~ 96 (251)
+.|-.+.
T Consensus 364 q~A~~g~ 370 (500)
T KOG0120|consen 364 QRAIVGA 370 (500)
T ss_pred ehhhccc
Confidence 9886543
No 89
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.78 E-value=3.1e-08 Score=87.97 Aligned_cols=82 Identities=22% Similarity=0.412 Sum_probs=69.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025549 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
...+.+.|.+.+|||.+|++||.+||..++ |+.+.+.. .+|++.|-|||+|.++++++.||+ ++-..+..+-|.|.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 445678899999999999999999999986 67766555 478889999999999999999999 68788888888887
Q ss_pred eccCCC
Q 025549 91 FAKYGP 96 (251)
Q Consensus 91 ~a~~~~ 96 (251)
-+...+
T Consensus 82 ~~~~~e 87 (510)
T KOG4211|consen 82 TAGGAE 87 (510)
T ss_pred ccCCcc
Confidence 775433
No 90
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.76 E-value=2.3e-08 Score=73.03 Aligned_cols=73 Identities=26% Similarity=0.424 Sum_probs=46.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC-----ccCCceEEE
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR-----VVDGREITV 89 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-----~i~g~~l~v 89 (251)
+++|+|.||+..++.++|+++|.+||.|.+|.+.... ..|||-|.+.+.|+.|++++... .|.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 4689999999999999999999999999999997754 46999999999999998876533 667777777
Q ss_pred Eecc
Q 025549 90 QFAK 93 (251)
Q Consensus 90 ~~a~ 93 (251)
++-.
T Consensus 75 ~vLe 78 (105)
T PF08777_consen 75 EVLE 78 (105)
T ss_dssp E---
T ss_pred EECC
Confidence 7654
No 91
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.75 E-value=1.6e-08 Score=93.01 Aligned_cols=84 Identities=25% Similarity=0.363 Sum_probs=73.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCC---CCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRT---GDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
..++.|||+||++.+++++|...|..||+|..|.|+..... .....+|||.|-+..+|++|++.|+|..|.+..|++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 34678999999999999999999999999999999876422 233567999999999999999999999999999999
Q ss_pred EeccCCC
Q 025549 90 QFAKYGP 96 (251)
Q Consensus 90 ~~a~~~~ 96 (251)
.|+++.+
T Consensus 252 gWgk~V~ 258 (877)
T KOG0151|consen 252 GWGKAVP 258 (877)
T ss_pred ccccccc
Confidence 9997543
No 92
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.69 E-value=1.8e-08 Score=82.50 Aligned_cols=81 Identities=23% Similarity=0.482 Sum_probs=75.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
...+.||++.|..+++.+.|-..|.+|-......++.+..+|+.+||+||.|.+..++..||..|||..++..+|++.-.
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 45789999999999999999999999998888889999999999999999999999999999999999999999987544
Q ss_pred c
Q 025549 93 K 93 (251)
Q Consensus 93 ~ 93 (251)
.
T Consensus 268 ~ 268 (290)
T KOG0226|consen 268 E 268 (290)
T ss_pred h
Confidence 3
No 93
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.66 E-value=8.8e-08 Score=83.30 Aligned_cols=76 Identities=32% Similarity=0.465 Sum_probs=69.2
Q ss_pred CcEEEEecCCC-CCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025549 15 TYSLLVLNITF-RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 15 ~~~l~V~nLp~-~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
+.+|.|.||.. .+|.+.|..+|..||+|..|.|..++. ..|+|+|.+...|+-|+++|+|..|.|++|.|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 67899999984 689999999999999999999998765 459999999999999999999999999999999997
Q ss_pred CC
Q 025549 94 YG 95 (251)
Q Consensus 94 ~~ 95 (251)
-.
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 43
No 94
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.59 E-value=1.7e-07 Score=64.22 Aligned_cols=69 Identities=30% Similarity=0.423 Sum_probs=47.4
Q ss_pred cEEEEecCCCCCCHHH----HHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025549 16 YSLLVLNITFRTTADD----LFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~----L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
..|||.|||.+.+... |+.++..+| .|..|. . +.|+|.|.+.+.|..|++.|+|..+.|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--~--------~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--G--------GTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----T--------T-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--C--------CEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 3699999999888765 456666675 676662 1 569999999999999999999999999999999
Q ss_pred eccC
Q 025549 91 FAKY 94 (251)
Q Consensus 91 ~a~~ 94 (251)
|...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 9854
No 95
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.58 E-value=2.4e-07 Score=74.87 Aligned_cols=77 Identities=25% Similarity=0.372 Sum_probs=68.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccC-CceEEEE
Q 025549 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD-GREITVQ 90 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~-g~~l~v~ 90 (251)
..+..+||+.|||.+++.+.|..+|.+|....+|.++.... +.|||+|.+...|..|+..|++..|- ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~-----~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRS-----GIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCC-----ceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 45678999999999999999999999999889998876543 78999999999999999999999885 8888888
Q ss_pred ecc
Q 025549 91 FAK 93 (251)
Q Consensus 91 ~a~ 93 (251)
+++
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 874
No 96
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.57 E-value=3.4e-08 Score=81.15 Aligned_cols=83 Identities=22% Similarity=0.380 Sum_probs=68.6
Q ss_pred HHHHHHhh-cCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccCCCchhhhccCCccc
Q 025549 30 DDLFPLFE-KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYGPNAEKIQQGRIVE 108 (251)
Q Consensus 30 ~~L~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~~~~~~~~r~~~ 108 (251)
++|...|. +||+|+++.|..+ ..-...|.+||.|...++|++|++.||+.+|.|++|.+++.......+..+......
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea~C~~~e~~ 161 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREAICGQFERT 161 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhhhhcccccc
Confidence 55666666 8999999977655 455678999999999999999999999999999999999999888888777766555
Q ss_pred CCCCC
Q 025549 109 SSSKS 113 (251)
Q Consensus 109 ~~~~~ 113 (251)
.+..+
T Consensus 162 ~C~rG 166 (260)
T KOG2202|consen 162 ECSRG 166 (260)
T ss_pred cCCCC
Confidence 55443
No 97
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.52 E-value=8.1e-08 Score=81.97 Aligned_cols=78 Identities=23% Similarity=0.384 Sum_probs=69.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCC--CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYG--KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
.+.|||+||-|++|++||.+.+...| .|.++++..+..+|+++|||+|...+....++.|+.|-..+|.|+.-+|.-+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 36799999999999999999998887 6788888899999999999999999999999999999999998876555433
No 98
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.51 E-value=1e-07 Score=76.79 Aligned_cols=69 Identities=23% Similarity=0.361 Sum_probs=56.8
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCcc
Q 025549 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i 82 (251)
.....+.||||.||..+|+|++|+.+|..|-...-+.|... +|. ..|||+|++.+.|..||..|+|..|
T Consensus 205 ~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g~--~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 205 SGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GGM--PVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred ccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CCc--ceEeecHHHHHHHHHHHHHhhccee
Confidence 34556789999999999999999999999976666666432 222 5799999999999999999999866
No 99
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.48 E-value=8.9e-07 Score=76.37 Aligned_cols=80 Identities=25% Similarity=0.324 Sum_probs=71.0
Q ss_pred CCCCCCcEEEEecCCC-CCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025549 10 PDIRDTYSLLVLNITF-RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
....++++++|-+|.. .++-+.|.++|..||.|+.|.+++.+. |.|+|++.+....+.||..||+..+.|.+|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 3445688999999995 567788999999999999999998654 7899999999999999999999999999999
Q ss_pred EEeccC
Q 025549 89 VQFAKY 94 (251)
Q Consensus 89 v~~a~~ 94 (251)
|.+++.
T Consensus 357 v~~SkQ 362 (494)
T KOG1456|consen 357 VCVSKQ 362 (494)
T ss_pred Eeeccc
Confidence 998874
No 100
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.46 E-value=5.9e-07 Score=79.97 Aligned_cols=79 Identities=23% Similarity=0.371 Sum_probs=65.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeE-EEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVD-VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
....+|-+.+||+.||++||.+||...-.|.. |.|+.++ .+.+.|-|||+|++.+.|++||. -|...|+.+-|.|..
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeeh
Confidence 45779999999999999999999998876655 4455553 56788999999999999999998 477788888888876
Q ss_pred cc
Q 025549 92 AK 93 (251)
Q Consensus 92 a~ 93 (251)
+.
T Consensus 179 Ss 180 (510)
T KOG4211|consen 179 SS 180 (510)
T ss_pred hH
Confidence 64
No 101
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.43 E-value=7.8e-08 Score=83.15 Aligned_cols=74 Identities=12% Similarity=0.062 Sum_probs=57.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025549 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
.||+|++|+..+...+|.++|..+|+|.+..+.. +...-+|.|+|........|+. ++|.++.-+...+...++
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCc
Confidence 5799999999999999999999999998876653 3334678899999999999998 678877644444443333
No 102
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.42 E-value=7.1e-08 Score=86.70 Aligned_cols=85 Identities=29% Similarity=0.456 Sum_probs=77.1
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025549 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
++.+...|||+-.|...++..+|.+||..+|.|..|.|+.+..++..+|.|||+|.+.+....||. |.|..+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEe
Confidence 344556789999999999999999999999999999999999999999999999999999999996 9999999999999
Q ss_pred EeccCC
Q 025549 90 QFAKYG 95 (251)
Q Consensus 90 ~~a~~~ 95 (251)
+.....
T Consensus 253 q~sEae 258 (549)
T KOG0147|consen 253 QLSEAE 258 (549)
T ss_pred cccHHH
Confidence 877543
No 103
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.34 E-value=4.8e-07 Score=77.56 Aligned_cols=83 Identities=28% Similarity=0.532 Sum_probs=75.1
Q ss_pred CcEEE-EecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025549 15 TYSLL-VLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 15 ~~~l~-V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
..++| |+||+..++.++|+.+|..+|.|..+.+.....++..+|||||+|.+...+..|+.. +...+.+.+|.|.+..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 44555 999999999999999999999999999999999999999999999999999999987 7889999999999987
Q ss_pred CCCch
Q 025549 94 YGPNA 98 (251)
Q Consensus 94 ~~~~~ 98 (251)
+.+..
T Consensus 263 ~~~~~ 267 (285)
T KOG4210|consen 263 PRPKS 267 (285)
T ss_pred CCccc
Confidence 76544
No 104
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.34 E-value=3.1e-06 Score=73.06 Aligned_cols=85 Identities=24% Similarity=0.359 Sum_probs=69.0
Q ss_pred CCCCCCCCCcEEEEecCC--CCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCcc--
Q 025549 7 SGPPDIRDTYSLLVLNIT--FRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV-- 82 (251)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp--~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i-- 82 (251)
.+........+|.++=|. +-+|.+.|..++...|+|..|.|+.. +| -.|+|||++.+.|++|.++|||..|
T Consensus 112 ~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYs 186 (494)
T KOG1456|consen 112 PGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYS 186 (494)
T ss_pred CCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccc
Confidence 344455566677766554 57899999999999999999988765 33 4599999999999999999999987
Q ss_pred CCceEEEEeccCCC
Q 025549 83 DGREITVQFAKYGP 96 (251)
Q Consensus 83 ~g~~l~v~~a~~~~ 96 (251)
+-.+|+|+||++..
T Consensus 187 GCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 187 GCCTLKIEYAKPTR 200 (494)
T ss_pred cceeEEEEecCcce
Confidence 45789999998743
No 105
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.33 E-value=1.3e-06 Score=74.48 Aligned_cols=82 Identities=17% Similarity=0.468 Sum_probs=63.6
Q ss_pred CCCcEEEEecCCCCCCHHH----H--HHHhhcCCCeeEEEEccCCCC-CCcce--EEEEEEecHHHHHHHHhhhCCCccC
Q 025549 13 RDTYSLLVLNITFRTTADD----L--FPLFEKYGKVVDVFIPRDRRT-GDSRG--FAFVRYKYADEAQKAVDRLDGRVVD 83 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~----L--~~~f~~~G~i~~v~i~~~~~~-g~~~g--~afV~f~~~~~A~~Ai~~l~g~~i~ 83 (251)
....-|||.+|++.+..++ | .++|.+||.|..|.|...-.. ....+ -.||+|...++|..||.+++|..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3456789999998877666 2 378999999999987653211 11112 2499999999999999999999999
Q ss_pred CceEEEEeccC
Q 025549 84 GREITVQFAKY 94 (251)
Q Consensus 84 g~~l~v~~a~~ 94 (251)
|+.|++.|...
T Consensus 192 Gr~lkatYGTT 202 (480)
T COG5175 192 GRVLKATYGTT 202 (480)
T ss_pred CceEeeecCch
Confidence 99999998753
No 106
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.29 E-value=7.1e-07 Score=81.04 Aligned_cols=82 Identities=17% Similarity=0.280 Sum_probs=67.9
Q ss_pred CCCCCCCCCcEEEEecCCCCCCHHHHHHHhh-cCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCcc---
Q 025549 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFE-KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV--- 82 (251)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i--- 82 (251)
..|+.....++|||.||---+|..+|+.+|. ..|.|+.++|-. .+..|||.|.+.++|.+.+.+|||..|
T Consensus 436 pSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~s 509 (718)
T KOG2416|consen 436 PSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPS 509 (718)
T ss_pred CCCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCC
Confidence 3455567789999999999999999999998 566777774433 236799999999999999999999977
Q ss_pred CCceEEEEeccC
Q 025549 83 DGREITVQFAKY 94 (251)
Q Consensus 83 ~g~~l~v~~a~~ 94 (251)
+++.|.|.|+..
T Consensus 510 NPK~L~adf~~~ 521 (718)
T KOG2416|consen 510 NPKHLIADFVRA 521 (718)
T ss_pred CCceeEeeecch
Confidence 678899999864
No 107
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.28 E-value=6.6e-07 Score=77.94 Aligned_cols=75 Identities=20% Similarity=0.383 Sum_probs=63.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC--ccCCceEEEE
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR--VVDGREITVQ 90 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~--~i~g~~l~v~ 90 (251)
.+...|+|.|||++++|+||..++..||.|+.+.+...+ ..|||+|.+++.|...+..+... .+.|++|.|+
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk------nQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK------NQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccc------hhhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 467899999999999999999999999999999887654 35999999999988866654443 5689999999
Q ss_pred ecc
Q 025549 91 FAK 93 (251)
Q Consensus 91 ~a~ 93 (251)
|..
T Consensus 100 ~sn 102 (492)
T KOG1190|consen 100 YSN 102 (492)
T ss_pred hhh
Confidence 874
No 108
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=4e-06 Score=75.89 Aligned_cols=80 Identities=28% Similarity=0.458 Sum_probs=64.8
Q ss_pred CCCcEEEEecCCCCCC------HHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCcc-CCc
Q 025549 13 RDTYSLLVLNITFRTT------ADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV-DGR 85 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t------~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i-~g~ 85 (251)
.....|+|.|+|.--. ...|..+|.++|+|..+.++.+..+| .+||+|++|.+..+|+.|++.|||..| ..+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 3456889999995322 23467889999999999998886555 899999999999999999999999987 567
Q ss_pred eEEEEecc
Q 025549 86 EITVQFAK 93 (251)
Q Consensus 86 ~l~v~~a~ 93 (251)
.+.|..-+
T Consensus 135 tf~v~~f~ 142 (698)
T KOG2314|consen 135 TFFVRLFK 142 (698)
T ss_pred eEEeehhh
Confidence 77776554
No 109
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.21 E-value=7.5e-06 Score=58.96 Aligned_cols=78 Identities=14% Similarity=0.283 Sum_probs=52.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCC-------CCCCcceEEEEEEecHHHHHHHHhhhCCCccCCce
Q 025549 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDR-------RTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~-------~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 86 (251)
....|.|-++|+. ....|..+|.+||+|++..-.... .......+..|+|.+..+|++||. .||..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3567889999988 567788899999999877411000 011123689999999999999999 6999998864
Q ss_pred -EEEEecc
Q 025549 87 -ITVQFAK 93 (251)
Q Consensus 87 -l~v~~a~ 93 (251)
|.|.+++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4477774
No 110
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.21 E-value=4.2e-06 Score=53.19 Aligned_cols=52 Identities=21% Similarity=0.542 Sum_probs=42.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHH
Q 025549 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAV 74 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai 74 (251)
+.|-|.|++....+. |..+|..||+|+.+.+.... .++||.|.+..+|+.||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 468899999886644 55588899999999886322 67999999999999985
No 111
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.19 E-value=9.8e-06 Score=69.40 Aligned_cols=81 Identities=26% Similarity=0.468 Sum_probs=64.6
Q ss_pred CCCCCCcEEEEecCC----CCCC-------HHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025549 10 PDIRDTYSLLVLNIT----FRTT-------ADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp----~~~t-------~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
.-....++|.|.||= ...+ .++|.+.+.+||.|..|.|...+ +.|.+.|.|.+.++|..||+.|+
T Consensus 260 sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h----PdGvvtV~f~n~eeA~~ciq~m~ 335 (382)
T KOG1548|consen 260 SKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH----PDGVVTVSFRNNEEADQCIQTMD 335 (382)
T ss_pred ccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC----CCceeEEEeCChHHHHHHHHHhc
Confidence 345667899999973 2223 35666778899999999887443 34899999999999999999999
Q ss_pred CCccCCceEEEEeccC
Q 025549 79 GRVVDGREITVQFAKY 94 (251)
Q Consensus 79 g~~i~g~~l~v~~a~~ 94 (251)
|.+|+|+.|...+...
T Consensus 336 GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 336 GRWFDGRQLTASIWDG 351 (382)
T ss_pred CeeecceEEEEEEeCC
Confidence 9999999999887643
No 112
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.17 E-value=1.1e-06 Score=72.20 Aligned_cols=73 Identities=18% Similarity=0.304 Sum_probs=62.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCC--------CCcce----EEEEEEecHHHHHHHHhhhCCCc
Q 025549 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRT--------GDSRG----FAFVRYKYADEAQKAVDRLDGRV 81 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~--------g~~~g----~afV~f~~~~~A~~Ai~~l~g~~ 81 (251)
..-+|||++||+.+...-|.++|.+||+|-.|.|...... |.+.. -|+|+|.....|+.+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999988766544 22222 37899999999999999999999
Q ss_pred cCCce
Q 025549 82 VDGRE 86 (251)
Q Consensus 82 i~g~~ 86 (251)
|+|..
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98865
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=7e-06 Score=73.70 Aligned_cols=69 Identities=22% Similarity=0.234 Sum_probs=63.1
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhh-cCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhh
Q 025549 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFE-KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (251)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 76 (251)
+..+..+..|||||+||--++.++|..+|+ .||.|+.+.|-.|++.+.++|-|=|+|.+...-.+||.+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 445567788999999999999999999998 899999999999988999999999999999999999884
No 114
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.16 E-value=5.3e-06 Score=76.74 Aligned_cols=74 Identities=26% Similarity=0.449 Sum_probs=64.7
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCee-EEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025549 17 SLLVLNITFRTTADDLFPLFEKYGKVV-DVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
+|-|.|+|+.++.+||.+||..|-.+- .|.|..+ ..|...|-|.|.|++.++|..|+..|++..|...+|.|.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 888999999999999999999997653 3444443 5788999999999999999999999999999999998864
No 115
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.13 E-value=7.3e-06 Score=74.48 Aligned_cols=64 Identities=27% Similarity=0.461 Sum_probs=53.2
Q ss_pred HHHHHHhhcCCCeeEEEEccCCCC---CCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025549 30 DDLFPLFEKYGKVVDVFIPRDRRT---GDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 30 ~~L~~~f~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
++|+..+.+||.|..|.|.....+ ....|..||+|.+.++|+.|+++|+|..|.|++|++.|..
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 345666778999999998876222 3346789999999999999999999999999999998875
No 116
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.09 E-value=3.5e-06 Score=73.01 Aligned_cols=88 Identities=17% Similarity=0.295 Sum_probs=71.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCC-eeE--EEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025549 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGK-VVD--VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~-i~~--v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
......|-+.+||++++.++|.+||..|.. |.. |.|+.+. .|.+.|-|||+|.+.+.|.+|+...+++.++.+.|.
T Consensus 277 ~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiE 355 (508)
T KOG1365|consen 277 TRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIE 355 (508)
T ss_pred CCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEE
Confidence 344567999999999999999999998873 444 6666663 788889999999999999999999998888899998
Q ss_pred EEeccCCCchhh
Q 025549 89 VQFAKYGPNAEK 100 (251)
Q Consensus 89 v~~a~~~~~~~~ 100 (251)
|.-+....-.+.
T Consensus 356 vfp~S~eeln~v 367 (508)
T KOG1365|consen 356 VFPCSVEELNEV 367 (508)
T ss_pred EeeccHHHHHHH
Confidence 887764443333
No 117
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=98.00 E-value=3.9e-05 Score=58.56 Aligned_cols=55 Identities=31% Similarity=0.524 Sum_probs=46.2
Q ss_pred HHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025549 31 DLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 31 ~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
+|.+.|.+||+|.-|.++.+ ..+|+|.+-+.|.+|+. |+|..|+|+.|.|.+..+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 67888899999998888764 38999999999999999 899999999999998754
No 118
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.88 E-value=9.8e-06 Score=71.19 Aligned_cols=67 Identities=18% Similarity=0.317 Sum_probs=56.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccC---CCCCC----------cceEEEEEEecHHHHHHHHhhhCCC
Q 025549 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRD---RRTGD----------SRGFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~---~~~g~----------~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
+..+|.+.|||.+-..+.|.++|..+|.|..|.|+.. +.+.. .+-+|||+|++.+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 5789999999999999999999999999999999865 22211 2457999999999999999988654
No 119
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.77 E-value=3e-05 Score=73.78 Aligned_cols=78 Identities=19% Similarity=0.297 Sum_probs=68.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCC--ceEE
Q 025549 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG--REIT 88 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g--~~l~ 88 (251)
....+..|||++|..++....|..+|..||.|..|.+-... -||||+|++...|++|+..|-|..|+| +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 44567889999999999999999999999999998876543 799999999999999999999999965 5688
Q ss_pred EEeccC
Q 025549 89 VQFAKY 94 (251)
Q Consensus 89 v~~a~~ 94 (251)
|.||.+
T Consensus 525 vdla~~ 530 (975)
T KOG0112|consen 525 VDLASP 530 (975)
T ss_pred cccccC
Confidence 888875
No 120
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.76 E-value=6.2e-05 Score=63.25 Aligned_cols=66 Identities=32% Similarity=0.394 Sum_probs=53.6
Q ss_pred HHHHHHHhhcCCCeeEEEEccCCCCCCc-ceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025549 29 ADDLFPLFEKYGKVVDVFIPRDRRTGDS-RGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 29 ~~~L~~~f~~~G~i~~v~i~~~~~~g~~-~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
++++++.+++||.|..|.|...+..... .--.||+|+..+.|.+|+-.|||..|+|+.+...|...
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 4578888999999999988766433222 23479999999999999999999999999999887653
No 121
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00013 Score=65.64 Aligned_cols=63 Identities=16% Similarity=0.322 Sum_probs=47.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCC---CCCCcce---EEEEEEecHHHHHHHHhhhC
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDR---RTGDSRG---FAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~---~~g~~~g---~afV~f~~~~~A~~Ai~~l~ 78 (251)
...||||+||+.++|++|...|..||.|. |.+.... ..-.++| |+|+.|+++..++..|.++.
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 57899999999999999999999999763 3333111 1112356 99999999998888776543
No 122
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.52 E-value=0.0001 Score=64.13 Aligned_cols=72 Identities=24% Similarity=0.330 Sum_probs=52.4
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcC----CCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025549 16 YSLLVLNITFRTTADDLFPLFEKY----GKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
-+|-+.+||+++++.||.+||... |.++.|.++.. .+|...|-|||.|..+++|+.||.+ |...|+.+-|.|
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 356778999999999999999632 23344444443 4788889999999999999999984 544554444433
No 123
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.45 E-value=0.00018 Score=65.37 Aligned_cols=82 Identities=17% Similarity=0.293 Sum_probs=60.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhh-cCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCcc----CCceEEEE
Q 025549 16 YSLLVLNITFRTTADDLFPLFE-KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV----DGREITVQ 90 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i----~g~~l~v~ 90 (251)
+++.|.|+|...|...|.+..+ ..|.-.++.++.|-.+..+.|||||.|.+.+++..+.+++||+.| ..+.+.|.
T Consensus 389 tt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~it 468 (549)
T KOG4660|consen 389 TTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASIT 468 (549)
T ss_pred hhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeee
Confidence 4555666665555555444432 356777888888888888999999999999999999999999965 34566788
Q ss_pred eccCCCc
Q 025549 91 FAKYGPN 97 (251)
Q Consensus 91 ~a~~~~~ 97 (251)
||..+..
T Consensus 469 YArIQGk 475 (549)
T KOG4660|consen 469 YARIQGK 475 (549)
T ss_pred hhhhhch
Confidence 8875443
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.43 E-value=6.1e-05 Score=71.38 Aligned_cols=79 Identities=24% Similarity=0.273 Sum_probs=70.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
...|+|.|+|+..|.++|+.+|..+|.++.+.++... .|+++|.|||.|.++.+|..++..++...+.-..+.|+...+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 4579999999999999999999999999999877664 799999999999999999999999998888888888887655
No 125
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.42 E-value=5.2e-06 Score=78.39 Aligned_cols=79 Identities=23% Similarity=0.268 Sum_probs=65.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
++.+++||.||+..+.+.+|...|..+|.|..+.|......+..+|+|||+|...++|.+||...+++.++...|.|.-
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g 743 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISG 743 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeC
Confidence 4457899999999999999999999999888887776667889999999999999999999997666665544444443
No 126
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=97.41 E-value=0.018 Score=46.49 Aligned_cols=64 Identities=22% Similarity=0.187 Sum_probs=39.9
Q ss_pred EecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHh--hhCCCccC
Q 025549 20 VLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD--RLDGRVVD 83 (251)
Q Consensus 20 V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~--~l~g~~i~ 83 (251)
|++-..--+.--|++-+...|.|.--.-......-.+.-+-|-.=.+.++|.+||. .|+|.+|.
T Consensus 21 LTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 21 LTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred eeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 33333344556777788888876543222222233333556777788999999987 47888773
No 127
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=97.40 E-value=0.00031 Score=56.12 Aligned_cols=82 Identities=15% Similarity=0.247 Sum_probs=52.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhc-CCCe---eEEE--EccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCC--
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEK-YGKV---VDVF--IPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG-- 84 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~-~G~i---~~v~--i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g-- 84 (251)
.+...|.|.+||+.+|++++.+.+.. ++.. .++. +...........-|||.|.+.+++...+..++|..|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45679999999999999999987776 6655 3333 11111112234569999999999999999999987632
Q ss_pred ---ceEEEEeccC
Q 025549 85 ---REITVQFAKY 94 (251)
Q Consensus 85 ---~~l~v~~a~~ 94 (251)
....|++|..
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 3567888865
No 128
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.37 E-value=0.00094 Score=43.54 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=44.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcC---CCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhh
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKY---GKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (251)
...|+|.||. +++.++|+.+|..| .....|.++.+. -|-|.|.+.+.|..||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3479999996 47889999999988 235677777663 4899999999999999865
No 129
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=97.33 E-value=8.9e-05 Score=63.61 Aligned_cols=80 Identities=20% Similarity=0.481 Sum_probs=61.7
Q ss_pred CcEEEEecCCCCCCHHHHH---HHhhcCCCeeEEEEccCCC----CCCcceEEEEEEecHHHHHHHHhhhCCCccCCceE
Q 025549 15 TYSLLVLNITFRTTADDLF---PLFEKYGKVVDVFIPRDRR----TGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~---~~f~~~G~i~~v~i~~~~~----~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l 87 (251)
..-+||.+|+..+..+++. ++|.+||.|..|.+..+.- .+.. .-+||+|+..++|..||...+|..++|+.|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 4568888999776555443 6788999999998877551 1222 238999999999999999999999999998
Q ss_pred EEEeccCC
Q 025549 88 TVQFAKYG 95 (251)
Q Consensus 88 ~v~~a~~~ 95 (251)
++.+...+
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 88777643
No 130
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.32 E-value=0.00021 Score=66.46 Aligned_cols=82 Identities=20% Similarity=0.024 Sum_probs=66.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeE-EEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025549 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVD-VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
.+...+..|||..||..+++.++.++|...-.|+. |.|...+ ++...+.|||+|..++++..|+..-+...++...|.
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ir 507 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIR 507 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEE
Confidence 34566889999999999999999999998877766 6665553 677889999999999888888876666667777788
Q ss_pred EEec
Q 025549 89 VQFA 92 (251)
Q Consensus 89 v~~a 92 (251)
|.-.
T Consensus 508 v~si 511 (944)
T KOG4307|consen 508 VDSI 511 (944)
T ss_pred eech
Confidence 8643
No 131
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.30 E-value=0.00021 Score=62.98 Aligned_cols=70 Identities=24% Similarity=0.375 Sum_probs=56.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCC--CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC-ccCCceEEEEec
Q 025549 16 YSLLVLNITFRTTADDLFPLFEKYG--KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR-VVDGREITVQFA 92 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~i~g~~l~v~~a 92 (251)
..|||+||.+.++..+|..+|...- --..+ |+.. ||+||.+.+...|.+|++.|+|. ++.|..+.|++.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f-l~k~-------gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF-LVKS-------GYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce-eeec-------ceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 3699999999999999999997542 11222 2222 89999999999999999999987 789999999876
Q ss_pred c
Q 025549 93 K 93 (251)
Q Consensus 93 ~ 93 (251)
-
T Consensus 74 v 74 (584)
T KOG2193|consen 74 V 74 (584)
T ss_pred h
Confidence 4
No 132
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.30 E-value=0.00089 Score=46.05 Aligned_cols=57 Identities=21% Similarity=0.367 Sum_probs=43.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCC
Q 025549 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (251)
-.+++||+ +|.++...||.++|..||.|.--.| .+ .-|||...+.+.|..|+..+..
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-ND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEEEEEE-CT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-cC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 35677776 9999999999999999999855444 33 3599999999999999988763
No 133
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.21 E-value=7.5e-05 Score=71.17 Aligned_cols=81 Identities=23% Similarity=0.334 Sum_probs=66.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025549 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
+...+.|||++||+..+++.+|...|..+|.|..|.|...+ -+....||||.|.+...+..|+..+.+..|....+.+.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 34557899999999999999999999999999999987653 34445799999999999999999899887755455554
Q ss_pred ec
Q 025549 91 FA 92 (251)
Q Consensus 91 ~a 92 (251)
+.
T Consensus 447 lG 448 (975)
T KOG0112|consen 447 LG 448 (975)
T ss_pred cc
Confidence 44
No 134
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=97.11 E-value=0.00072 Score=61.55 Aligned_cols=73 Identities=16% Similarity=0.252 Sum_probs=57.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhc--CCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCC--CccCCce
Q 025549 11 DIRDTYSLLVLNITFRTTADDLFPLFEK--YGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG--RVVDGRE 86 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~i~g~~ 86 (251)
+...-|+|+|.-||..+-.++|+.||.. +-.++.|.+..+. .=||+|++..||+.|.+.|.. .+|.|++
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 3455688999999999999999999964 6788888887663 269999999999999887753 3566666
Q ss_pred EEEE
Q 025549 87 ITVQ 90 (251)
Q Consensus 87 l~v~ 90 (251)
|...
T Consensus 244 ImAR 247 (684)
T KOG2591|consen 244 IMAR 247 (684)
T ss_pred hhhh
Confidence 5543
No 135
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.05 E-value=0.00032 Score=62.61 Aligned_cols=75 Identities=25% Similarity=0.350 Sum_probs=61.8
Q ss_pred CCcEEEEecCCCCC-CHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 14 DTYSLLVLNITFRT-TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 14 ~~~~l~V~nLp~~~-t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
+.+.|.|.-+|+.+ +-++|..+|.+||+|..|.|-... -.|.|+|.+..+|-.|.. .++..|+++.|+|.|.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 34566666777655 568999999999999999886652 359999999999977776 7999999999999998
Q ss_pred cCC
Q 025549 93 KYG 95 (251)
Q Consensus 93 ~~~ 95 (251)
++.
T Consensus 444 nps 446 (526)
T KOG2135|consen 444 NPS 446 (526)
T ss_pred cCC
Confidence 863
No 136
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.05 E-value=0.0024 Score=54.14 Aligned_cols=71 Identities=25% Similarity=0.436 Sum_probs=54.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE-EEecc
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT-VQFAK 93 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~-v~~a~ 93 (251)
..-|.|-++|+... ..|..+|.+||+|+...... +| .|-+|.|.+..+|++||. .||..|+|..+. |.-|.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~---ng---NwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS---NG---NWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC---CC---ceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 45677888887643 56788999999998876542 22 689999999999999999 699999877543 55443
No 137
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.95 E-value=0.0088 Score=43.88 Aligned_cols=69 Identities=14% Similarity=0.251 Sum_probs=48.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccC
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD 83 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~ 83 (251)
..+..+.+..+|..++.++|..+...+- .|..+.|+.+. ..++-.++|.|.+.+.|......+||..|+
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3344555555555666666765555554 56777887753 234557899999999999999999999774
No 138
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.86 E-value=0.007 Score=45.95 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=54.0
Q ss_pred CCcEEEEecCCCCC----CHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025549 14 DTYSLLVLNITFRT----TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 14 ~~~~l~V~nLp~~~----t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
+..||.|.=|..++ +...|...+..||+|..|.+.-. .-|.|.|.+...|=.|+.+++. ...|..+.+
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 34577776555443 34456667789999999987533 4599999999999999999886 567777888
Q ss_pred Eecc
Q 025549 90 QFAK 93 (251)
Q Consensus 90 ~~a~ 93 (251)
.|..
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 8754
No 139
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.85 E-value=0.0012 Score=54.62 Aligned_cols=76 Identities=22% Similarity=0.299 Sum_probs=61.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC----ccCCceEEEEe
Q 025549 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR----VVDGREITVQF 91 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~----~i~g~~l~v~~ 91 (251)
..|||.||...+..+.|...|..||+|....++.+ ..++..+-++|+|...-.|.+|+..+.-. ++.+.++.|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 57999999999999999999999999977666555 36777788999999999999999877422 34566666654
Q ss_pred c
Q 025549 92 A 92 (251)
Q Consensus 92 a 92 (251)
+
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 4
No 140
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.62 E-value=0.0014 Score=60.97 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=62.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025549 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
..+..+|||+||-..+.++.++.++..+|.|..+.... |||++|..+..+..|+..|+...++|+.|.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34567999999999999999999999999887775543 899999999999999999999999998887765
No 141
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.60 E-value=0.0051 Score=49.40 Aligned_cols=63 Identities=24% Similarity=0.324 Sum_probs=46.3
Q ss_pred CHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC--CCccCCceEEEEeccCCC
Q 025549 28 TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD--GRVVDGREITVQFAKYGP 96 (251)
Q Consensus 28 t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~--g~~i~g~~l~v~~a~~~~ 96 (251)
..+.|.++|..|+.+..+.+...- +=..|.|.+.+.|+.|...|+ +..|.|..|.|.|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 457899999999988877666543 458999999999999999999 899999999999996443
No 142
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.59 E-value=0.011 Score=40.18 Aligned_cols=59 Identities=22% Similarity=0.312 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHhhcCC-----CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 25 FRTTADDLFPLFEKYG-----KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 25 ~~~t~~~L~~~f~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
..++..+|..+|...+ .|-.|.|.. .|+||+.... .|+.+|..|++..+.|+.|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4678899999997764 466777765 4799988764 789999999999999999999875
No 143
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=96.27 E-value=0.016 Score=38.41 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=43.4
Q ss_pred CCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025549 26 RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 26 ~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
.++-++|+..|..|+-. .|..++ + | -||.|.+..+|+.|+...++..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 56889999999999732 233332 3 2 599999999999999999999888877765
No 144
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.22 E-value=0.0029 Score=60.37 Aligned_cols=77 Identities=31% Similarity=0.394 Sum_probs=63.6
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCcc--CCceEEEEeccCC
Q 025549 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV--DGREITVQFAKYG 95 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i--~g~~l~v~~a~~~ 95 (251)
.++.|.+..++-.-|..+|..||.|..++...+- ..|.|+|...+.|..|+++|+|.++ .|-+..|.||+.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 4455566667778899999999999999887664 5799999999999999999999965 7889999999876
Q ss_pred Cchhh
Q 025549 96 PNAEK 100 (251)
Q Consensus 96 ~~~~~ 100 (251)
+..+.
T Consensus 375 ~~~ep 379 (1007)
T KOG4574|consen 375 PMYEP 379 (1007)
T ss_pred ccccC
Confidence 55443
No 145
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.90 E-value=0.0049 Score=53.02 Aligned_cols=81 Identities=14% Similarity=0.095 Sum_probs=64.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
....++||+++.+.+.+.++..+|..+|.+..+.+.........+++++|.|...+.+..||+......+.+..+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 35778999999999999999999999998877766666667788999999999999999999954444555555554444
Q ss_pred c
Q 025549 93 K 93 (251)
Q Consensus 93 ~ 93 (251)
.
T Consensus 166 ~ 166 (285)
T KOG4210|consen 166 T 166 (285)
T ss_pred c
Confidence 3
No 146
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.75 E-value=0.038 Score=49.50 Aligned_cols=68 Identities=18% Similarity=0.356 Sum_probs=57.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCC
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g 84 (251)
+..|+|-.+|..++..||..|+..|- .|..|.|+.+. ..+.=.++|.|.+.++|..+.+.|||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 77899999999999999999998764 67888888853 2233458999999999999999999998743
No 147
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.05 Score=50.20 Aligned_cols=82 Identities=26% Similarity=0.424 Sum_probs=62.5
Q ss_pred CCCCcEEEEecCCC-CCCHHHHHHHhhcC----CCeeEEEEccCCC----------CCC---------------------
Q 025549 12 IRDTYSLLVLNITF-RTTADDLFPLFEKY----GKVVDVFIPRDRR----------TGD--------------------- 55 (251)
Q Consensus 12 ~~~~~~l~V~nLp~-~~t~~~L~~~f~~~----G~i~~v~i~~~~~----------~g~--------------------- 55 (251)
..++..|-|.||.| .+...+|..+|..| |.|..|.|+.... .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 45678999999998 47889999999766 5888888774321 111
Q ss_pred ----------------cceEEEEEEecHHHHHHHHhhhCCCccC--CceEEEEecc
Q 025549 56 ----------------SRGFAFVRYKYADEAQKAVDRLDGRVVD--GREITVQFAK 93 (251)
Q Consensus 56 ----------------~~g~afV~f~~~~~A~~Ai~~l~g~~i~--g~~l~v~~a~ 93 (251)
-.=||.|+|.+.+.|.+....++|.+|. +..|-+.|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 0128999999999999999999999985 5566666654
No 148
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.94 E-value=0.0019 Score=57.07 Aligned_cols=80 Identities=18% Similarity=0.282 Sum_probs=65.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
...|.|.|||+.+.|+.|..++.+||.|..|..+.. .......-|+|...+.+..||.+|+|..|....++|.|-..
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt---~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT---DSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc---chHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 456889999999999999999999999998866432 11223456789999999999999999999999999998865
Q ss_pred CCc
Q 025549 95 GPN 97 (251)
Q Consensus 95 ~~~ 97 (251)
...
T Consensus 157 eq~ 159 (584)
T KOG2193|consen 157 EQN 159 (584)
T ss_pred hhh
Confidence 433
No 149
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=0.076 Score=46.93 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=47.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCe-eEEEEccCCCCCCcceEEEEEEecHHHHHHHHhh
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKV-VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 76 (251)
.-.++|-|-++|.....+||..+|+.|+.- ..|.++.+ ..||..|.....|..||..
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 346899999999999999999999999743 45655555 4699999999999999884
No 150
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=94.29 E-value=0.032 Score=44.05 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=57.2
Q ss_pred CcEEEEecCCCCCCH-----HHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCc-eEE
Q 025549 15 TYSLLVLNITFRTTA-----DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR-EIT 88 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~-----~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~-~l~ 88 (251)
..+|++++|+.++.. ...+.+|.+|.+...+.++... ++.-|.|.+.+.|..|..++++..|.|+ .|+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf------rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF------RRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh------ceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 446888999876543 2355677777776666655432 6788999999999999999999999888 888
Q ss_pred EEeccCC
Q 025549 89 VQFAKYG 95 (251)
Q Consensus 89 v~~a~~~ 95 (251)
+.|+.+.
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 8888754
No 151
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=92.87 E-value=0.3 Score=32.56 Aligned_cols=61 Identities=13% Similarity=0.218 Sum_probs=46.3
Q ss_pred HHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025549 30 DDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 30 ~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
++|.+.|...| +|.+|.-+....++.+....||+++...+... .|+=..|++..|.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCC
Confidence 56888888888 78888777776677777888999887655333 355578899999998764
No 152
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=92.80 E-value=0.2 Score=33.25 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=46.3
Q ss_pred HHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025549 30 DDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 30 ~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
.+|++.|..+| ++.+|..+....+..+..+-||+.....+... .|+=..|+|+.|.|+-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46888899988 67888888777777777888998887654444 356678899999998653
No 153
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=91.76 E-value=0.64 Score=39.52 Aligned_cols=47 Identities=13% Similarity=0.132 Sum_probs=36.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCe-eEEEEccCCCCCCcceEEEEEEecH
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKV-VDVFIPRDRRTGDSRGFAFVRYKYA 67 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~ 67 (251)
..-|+|+||+.++.-.||+..+.+.|.+ ..|.+.- +.|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCc
Confidence 4569999999999999999999988854 4444432 226799999765
No 154
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=90.39 E-value=0.65 Score=34.42 Aligned_cols=57 Identities=14% Similarity=0.255 Sum_probs=29.8
Q ss_pred cEEEEecCCCC---------CCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe-cHHHHHHHHh
Q 025549 16 YSLLVLNITFR---------TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK-YADEAQKAVD 75 (251)
Q Consensus 16 ~~l~V~nLp~~---------~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~-~~~~A~~Ai~ 75 (251)
.+++|.|++.+ ++.++|.+.|..|..+... .+.++ ..+.|+++|+|. +..-...|+.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~-~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVK-PLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEE-EEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeE-ECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 35778888654 3567899999999887544 33443 245699999998 4444455554
No 155
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=90.07 E-value=1.3 Score=39.67 Aligned_cols=85 Identities=25% Similarity=0.396 Sum_probs=59.2
Q ss_pred CCCCCCCcEEEEecCCC-CCCHHHHHHHhhcC----CCeeEEEEccCCCC----------CC------------------
Q 025549 9 PPDIRDTYSLLVLNITF-RTTADDLFPLFEKY----GKVVDVFIPRDRRT----------GD------------------ 55 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~-~~t~~~L~~~f~~~----G~i~~v~i~~~~~~----------g~------------------ 55 (251)
|....++..|-|-||.| .+...+|..+|..| |.|..|.|+..... |.
T Consensus 140 pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~ 219 (622)
T COG5638 140 PEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFG 219 (622)
T ss_pred cCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccC
Confidence 33456678899999998 47778898888765 57777776532100 10
Q ss_pred --------c-----------------------------ceEEEEEEecHHHHHHHHhhhCCCccC--CceEEEEecc
Q 025549 56 --------S-----------------------------RGFAFVRYKYADEAQKAVDRLDGRVVD--GREITVQFAK 93 (251)
Q Consensus 56 --------~-----------------------------~g~afV~f~~~~~A~~Ai~~l~g~~i~--g~~l~v~~a~ 93 (251)
. .-||.|+|.+.+.++....+++|.++. +..+.+.|..
T Consensus 220 ~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 220 DDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred CccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 0 117899999999999999999999874 4455555554
No 156
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=89.38 E-value=0.041 Score=50.45 Aligned_cols=73 Identities=16% Similarity=0.146 Sum_probs=55.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCc
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~ 85 (251)
..+++|||.||+++++.++|..++..+-.+..+.+...........+++|+|.-..+...|+.+||+..+...
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 4468899999999999999999999887666666554433344556789999977777777777887765433
No 157
>PRK11901 hypothetical protein; Reviewed
Probab=89.29 E-value=1 Score=39.16 Aligned_cols=65 Identities=20% Similarity=0.326 Sum_probs=43.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEE--EEEecHHHHHHHHhhhCCCcc
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAF--VRYKYADEAQKAVDRLDGRVV 82 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~af--V~f~~~~~A~~Ai~~l~g~~i 82 (251)
...|+|.|..+. .++.|..|..+++ +..+.|+....+|+. .|.+ -.|.+.++|+.||..|-....
T Consensus 243 ~~~YTLQL~Aas---~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~lq 309 (327)
T PRK11901 243 ASHYTLQLSSAS---RSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAEVQ 309 (327)
T ss_pred CCCeEEEeecCC---CHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHHHH
Confidence 346788887764 4778888888776 344555544334433 5554 378999999999998875433
No 158
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=88.65 E-value=3.6 Score=30.96 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=55.1
Q ss_pred CCCCcEEEEecCCCC---CCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceE
Q 025549 12 IRDTYSLLVLNITFR---TTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~---~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l 87 (251)
..+...|.|.+.... .+...|.+++.+-| .++.+..-. +...|.|.+.++..+|.+.|....-++..|
T Consensus 32 ygedpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~--------~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~V 103 (127)
T PRK10629 32 RQQESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEN--------DSLLIRFDSPEQSAAAKEVLDRTLPHGYII 103 (127)
T ss_pred cCCCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeC--------CEEEEEECCHHHHHHHHHHHHHHcCCCCEE
Confidence 345667999887444 56678888898888 455555432 358999999999999999888766667788
Q ss_pred EEEecc
Q 025549 88 TVQFAK 93 (251)
Q Consensus 88 ~v~~a~ 93 (251)
.+.++.
T Consensus 104 Alnl~p 109 (127)
T PRK10629 104 AQQDDN 109 (127)
T ss_pred EEecCC
Confidence 877776
No 159
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=87.87 E-value=0.6 Score=41.25 Aligned_cols=68 Identities=15% Similarity=0.307 Sum_probs=49.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCC--CCCcceEEEEEEecHHHHHHHHhhhCCCcc
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRR--TGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~--~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i 82 (251)
-..|.|.+||+.+++.+|.+.+..|- .|....+..... .....+.|||.|...++.......++|..|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 45688999999999999998888765 233333332111 112356799999999999998888888865
No 160
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=85.92 E-value=1 Score=37.08 Aligned_cols=64 Identities=20% Similarity=0.360 Sum_probs=45.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHh
Q 025549 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 75 (251)
......+++.+++..++..++..+|..+|.|..+.+...........+.++.+.....+..++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 4456789999999999999999999999999777776655444344444544544444444444
No 161
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=85.53 E-value=2.3 Score=36.40 Aligned_cols=82 Identities=15% Similarity=0.269 Sum_probs=59.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCC-------CCCCcceEEEEEEecHHHHHHHHh----hhCC-
Q 025549 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDR-------RTGDSRGFAFVRYKYADEAQKAVD----RLDG- 79 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~-------~~g~~~g~afV~f~~~~~A~~Ai~----~l~g- 79 (251)
.--+..|.+.||...++--.+...|.+||+|+.|.++.+. ...+...-..+-|-+.+.|..... .|..
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 3346778999999999999999999999999999998765 112234567889999888876533 2322
Q ss_pred -CccCCceEEEEecc
Q 025549 80 -RVVDGREITVQFAK 93 (251)
Q Consensus 80 -~~i~g~~l~v~~a~ 93 (251)
..+....|.|.|..
T Consensus 92 K~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 92 KTKLKSESLTLSFVS 106 (309)
T ss_pred HHhcCCcceeEEEEE
Confidence 24566667776654
No 162
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=85.33 E-value=0.23 Score=41.95 Aligned_cols=68 Identities=26% Similarity=0.457 Sum_probs=42.9
Q ss_pred CcEEEEecCCCC------------CCHHHHHHHhhcCCCeeEEEEcc-CC----CCCCc-----ceEE---------EEE
Q 025549 15 TYSLLVLNITFR------------TTADDLFPLFEKYGKVVDVFIPR-DR----RTGDS-----RGFA---------FVR 63 (251)
Q Consensus 15 ~~~l~V~nLp~~------------~t~~~L~~~f~~~G~i~~v~i~~-~~----~~g~~-----~g~a---------fV~ 63 (251)
.-|||+.+||-. .++.-|...|..||.|..|.|+. ++ .+|+. .||+ ||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 347899888832 24567999999999999888763 22 12332 3333 344
Q ss_pred EecHHHHHHHHhhhCCCcc
Q 025549 64 YKYADEAQKAVDRLDGRVV 82 (251)
Q Consensus 64 f~~~~~A~~Ai~~l~g~~i 82 (251)
|-.......||.+|.|..|
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 4444555567777776644
No 163
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.14 E-value=0.18 Score=45.25 Aligned_cols=77 Identities=5% Similarity=-0.168 Sum_probs=61.3
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025549 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
+..|+..||..+++.+|.-+|+-||.|..+.+......+.....+||.... .+|..||+.+.-..+.|..+.|.+++
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 346778899999999999999999999888877666666667778887665 46778888777777788888888775
No 164
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=84.55 E-value=8.5 Score=27.50 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=46.6
Q ss_pred CCCCCCCCCCCCCCCcEEEEec------CCCCCCHHHHHHHhhc-CCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHH
Q 025549 1 MSHFGKSGPPDIRDTYSLLVLN------ITFRTTADDLFPLFEK-YGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKA 73 (251)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~V~n------Lp~~~t~~~L~~~f~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 73 (251)
|.++|..=.|....+..-|||+ |+..++..+|...+.. ++.-..+.|...-. +.... ++|...+-++.+..
T Consensus 1 ~cs~GG~i~pr~~dg~l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~~~lky~Lp-~edld-~Lisv~~DeDl~~M 78 (97)
T cd06410 1 LCSYGGRILPRPPDGQLRYVGGETRIVSVDRSISFKELVSKLSELFGAGVVVTLKYQLP-DEDLD-ALISVSNDEDLKNM 78 (97)
T ss_pred CcccCCEEeCcCCCCCEEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCceEEEEEcC-CCCcc-eeEEecCcHHHHHH
Confidence 4566654444444455557776 7888999888877653 33211122222111 11212 79999999999999
Q ss_pred HhhhCCC
Q 025549 74 VDRLDGR 80 (251)
Q Consensus 74 i~~l~g~ 80 (251)
++..+..
T Consensus 79 ~~e~~~~ 85 (97)
T cd06410 79 MEEYDRL 85 (97)
T ss_pred HHhhccc
Confidence 9977644
No 165
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=83.40 E-value=3.8 Score=27.98 Aligned_cols=58 Identities=24% Similarity=0.252 Sum_probs=39.8
Q ss_pred EEEEecCCCCCCHHHHHHHhhc-CC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhh
Q 025549 17 SLLVLNITFRTTADDLFPLFEK-YG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (251)
.-|+-.++..++..+|+..++. || .|..|..+.-+. ..-=|||.+...+.|.+....|
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHhh
Confidence 3566678899999999999986 55 566665443321 1134999998887777765433
No 166
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=82.72 E-value=3.8 Score=28.46 Aligned_cols=57 Identities=23% Similarity=0.250 Sum_probs=39.7
Q ss_pred EEEecCCCCCCHHHHHHHhhc-CC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhh
Q 025549 18 LLVLNITFRTTADDLFPLFEK-YG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (251)
.|+--++..++..+|++.++. || .|..|..+..+. ..-=|||.|.....|.+....|
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHhh
Confidence 455567889999999999986 56 566665544331 1134999999888888775543
No 167
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=82.16 E-value=6.3 Score=25.01 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=41.1
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecH----HHHHHHHhh
Q 025549 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYA----DEAQKAVDR 76 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~----~~A~~Ai~~ 76 (251)
||.|.||.-......|+..|...-.|..+.+.... +.+-|+|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHH
Confidence 58888998888889999999999888888776543 5688888743 555666654
No 168
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=81.96 E-value=31 Score=33.33 Aligned_cols=70 Identities=4% Similarity=0.076 Sum_probs=51.2
Q ss_pred cEEEEecCC--CCCCHHHHHHHhhcCCCe-----eEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025549 16 YSLLVLNIT--FRTTADDLFPLFEKYGKV-----VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 16 ~~l~V~nLp--~~~t~~~L~~~f~~~G~i-----~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
.+-|.-||- ..++..+|..++..-+.| -.|.|.. .|.||+... ..|...+..|++..+.|+.|.
T Consensus 486 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~ 556 (629)
T PRK11634 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELPK-GMPGEVLQHFTRTRILNKPMN 556 (629)
T ss_pred CEEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcCh-hhHHHHHHHhccccccCCceE
Confidence 333444554 567888888888766543 4566644 578998875 458889999999999999999
Q ss_pred EEeccC
Q 025549 89 VQFAKY 94 (251)
Q Consensus 89 v~~a~~ 94 (251)
|+.+..
T Consensus 557 ~~~~~~ 562 (629)
T PRK11634 557 MQLLGD 562 (629)
T ss_pred EEECCC
Confidence 998853
No 169
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=80.41 E-value=0.98 Score=40.21 Aligned_cols=59 Identities=24% Similarity=0.242 Sum_probs=46.7
Q ss_pred EEEEecCCCCCC--------HHHHHHHhhc--CCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHh
Q 025549 17 SLLVLNITFRTT--------ADDLFPLFEK--YGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 17 ~l~V~nLp~~~t--------~~~L~~~f~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 75 (251)
.+|+.++..+.. .++|..+|.. .+.+..|.+..+..+....|..|++|...+.|++++.
T Consensus 176 ~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 176 DVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 466666665443 3589999988 6788888887777777888999999999999999974
No 170
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=79.21 E-value=17 Score=24.58 Aligned_cols=63 Identities=13% Similarity=0.303 Sum_probs=44.4
Q ss_pred EecCCCCCCHHHHHHHh-hcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025549 20 VLNITFRTTADDLFPLF-EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 20 V~nLp~~~t~~~L~~~f-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
|-.+|.-+..+||.... ..||....+.+..+. -.|-..+.++...||+.++.. ...+.|.|-+
T Consensus 13 Ii~f~RPvkf~dl~~kv~~afGq~mdl~ytn~e--------L~iPl~~Q~DLDkAie~ld~s-~~~ksLRilL 76 (79)
T cd06405 13 IIQFPRPVKFKDLQQKVTTAFGQPMDLHYTNNE--------LLIPLKNQEDLDRAIELLDRS-PHMKSLRILL 76 (79)
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeEEEeccc--------EEEeccCHHHHHHHHHHHccC-ccccceeEeE
Confidence 44567777777877666 579988888776542 788889999999999987763 3333444433
No 171
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=76.97 E-value=3.4 Score=34.23 Aligned_cols=35 Identities=17% Similarity=0.394 Sum_probs=28.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEE
Q 025549 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVF 46 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~ 46 (251)
..+..+||+-|||..+|++.|..++.++|-+..+.
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 34566899999999999999999999998655443
No 172
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=75.88 E-value=0.83 Score=39.97 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=37.7
Q ss_pred HHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC
Q 025549 29 ADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 29 ~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
...|+++++++|.|..-.|... .+.|.+||.+-..++++++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rt----FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRT----FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHH----hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 4788999999998866555432 23388999999999999999998865
No 173
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=74.89 E-value=8.9 Score=24.91 Aligned_cols=19 Identities=11% Similarity=0.522 Sum_probs=16.0
Q ss_pred HHHHHHhhcCCCeeEEEEc
Q 025549 30 DDLFPLFEKYGKVVDVFIP 48 (251)
Q Consensus 30 ~~L~~~f~~~G~i~~v~i~ 48 (251)
++|.++|..+|+|.-+.|.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999999777654
No 174
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=74.80 E-value=0.65 Score=38.05 Aligned_cols=72 Identities=28% Similarity=0.417 Sum_probs=54.4
Q ss_pred CcEEEEec----CCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceE
Q 025549 15 TYSLLVLN----ITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (251)
Q Consensus 15 ~~~l~V~n----Lp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l 87 (251)
..+++.|+ |...++++.+...|...|.|..+.+..+. +|.+..++|++|.-....-.|+..+++..+.-.++
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~ 155 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKV 155 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcCCCCc
Confidence 34566777 77778888888999999999888887664 47788899999988777777877766665443333
No 175
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=74.38 E-value=14 Score=24.84 Aligned_cols=56 Identities=14% Similarity=0.250 Sum_probs=36.9
Q ss_pred EEEecCCCCCCHHHHHHHhh-cCCCe-eEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025549 18 LLVLNITFRTTADDLFPLFE-KYGKV-VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~-~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
+++-.||..++.++|...+. .|+.. ..+.|......| -+|.+.+.++.+.|+..+.
T Consensus 12 ~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedg-----d~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 12 TRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDG-----DLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCC-----CEEEecCHHHHHHHHHHHH
Confidence 55556788999998887774 44431 233333222222 4899999999999999664
No 176
>PRK02886 hypothetical protein; Provisional
Probab=72.62 E-value=14 Score=25.74 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=36.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCcc
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i 82 (251)
+.+.+||+.+|-. ...+..||.|..+.-.. .| .|.|.|.++|+..++.|....|
T Consensus 5 R~glIVyl~~~k~-------~r~LrkyG~I~Y~Skr~--------kY-vvlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 5 RQGIIVWLHSLKQ-------AKQLRKFGNVHYVSKRL--------KY-AVLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred eeEEEEEEeecHh-------HHHHhhcCcEEEEeccc--------cE-EEEEECHHHHHHHHHHHhcCCC
Confidence 4566777766543 23467999998874322 23 4568899999999998877644
No 177
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=72.24 E-value=16 Score=24.51 Aligned_cols=52 Identities=12% Similarity=0.222 Sum_probs=34.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCcc
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i 82 (251)
+-+||+.++-. + ..+..||.|..+.-.. .|+ |.|-|.++++..++.|....|
T Consensus 3 gliVyl~~~k~------~-r~L~kfG~i~Y~Skk~--------kYv-vlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 3 GLIVYLYSLKD------A-RQLRKFGDIHYVSKKM--------KYV-VLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred EEEEEEechHh------H-HhHhhcccEEEEECCc--------cEE-EEEECHHHHHHHHHHHhcCCC
Confidence 34566655432 2 3467999998874322 333 568899999999998876644
No 178
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=72.10 E-value=22 Score=22.48 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=31.5
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecH-HHHHHHHhhhCC
Q 025549 17 SLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYA-DEAQKAVDRLDG 79 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~-~~A~~Ai~~l~g 79 (251)
+|.|......-...+|..+|..+| .|..+........ .....++++... +....++..|..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDP--GISRITIVVEGDDDVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCC--CeEEEEEEEECCHHHHHHHHHHHhC
Confidence 455544443334668888898886 5666665432111 112233334322 555556665543
No 179
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=71.94 E-value=1.8 Score=40.92 Aligned_cols=71 Identities=17% Similarity=0.123 Sum_probs=54.5
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025549 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
+||+.|-....+..-|..++..+++++...++.....+..++-+|++|.....|+.|.. |.++.+....|+
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~k 583 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCLK 583 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-ccccccccccee
Confidence 78888888887888888899999988877777666667777789999999988877766 565655444443
No 180
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=70.49 E-value=20 Score=25.16 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=32.1
Q ss_pred HHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025549 29 ADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 29 ~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
.+.+.++++.+| +|..+.+...+.+ .++.+++.+.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD----~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYD----FVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCC----EEEEEEcCCHHHHHHHHHHHH
Confidence 356777887776 7888877654432 667888888888877655443
No 181
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=70.21 E-value=12 Score=28.88 Aligned_cols=56 Identities=25% Similarity=0.261 Sum_probs=34.7
Q ss_pred EEEEecCCCCCCHHHHHHHhhc-CC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHh
Q 025549 17 SLLVLNITFRTTADDLFPLFEK-YG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 75 (251)
..||--++..++..+|++.++. |+ .|..|..+.-+. |. --|||.+....+|.+...
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~--KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GL--KKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-Cc--eEEEEEECCCCcHHHHHH
Confidence 3455567778889999988886 55 455554433321 11 238999976666554433
No 182
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=70.05 E-value=13 Score=24.62 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=37.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY 66 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 66 (251)
..+|+|.++.-..-...|...+.....|..+.+-... +.++|+|++
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~------~~~~V~~d~ 48 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEK------GTATVTFDS 48 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEccc------CeEEEEEcC
Confidence 3468888888777788999999998888888887654 559999987
No 183
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=69.53 E-value=7.7 Score=32.31 Aligned_cols=73 Identities=5% Similarity=0.044 Sum_probs=42.1
Q ss_pred CcEEEEecCCCCCC----HHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEE-ecHHHHHHHHhhhCCCccCCceEE
Q 025549 15 TYSLLVLNITFRTT----ADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRY-KYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 15 ~~~l~V~nLp~~~t----~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f-~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
...||||+|...+- -+.|...+.+.+ .|+.+.+.... .||+.... .+.++.+.+|+++.+..+.-..|.
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy-----~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL 111 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSY-----NGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVL 111 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccc-----cccccccccccHHHHHHHHHHhhccCcccceEE
Confidence 46799999876542 344555554444 34444433222 15553333 477888888888777766555555
Q ss_pred EEec
Q 025549 89 VQFA 92 (251)
Q Consensus 89 v~~a 92 (251)
|..+
T Consensus 112 ~GhS 115 (299)
T KOG4840|consen 112 VGHS 115 (299)
T ss_pred EecC
Confidence 5544
No 184
>PRK10905 cell division protein DamX; Validated
Probab=68.59 E-value=16 Score=31.89 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=40.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEE--EEEEecHHHHHHHHhhhCCC
Q 025549 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFA--FVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~a--fV~f~~~~~A~~Ai~~l~g~ 80 (251)
..|+|.|..+.. ++.|..|..++|. ....++....+|+. .|. |-.|.+.++|+.||..|-..
T Consensus 246 ~~YTLQL~A~Ss---~~~l~~fakKlgL-~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 246 SHYTLQLSSSSN---YDNLNGWAKKENL-KNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred CceEEEEEecCC---HHHHHHHHHHcCC-CceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCCHH
Confidence 457888887764 5777777777753 33323333334432 343 44789999999999987643
No 185
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=67.72 E-value=11 Score=26.33 Aligned_cols=46 Identities=22% Similarity=0.236 Sum_probs=28.0
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe
Q 025549 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK 65 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 65 (251)
-|||+|++..+-+.-...+.+..++-.-+.+.... ...||+|-.+-
T Consensus 27 GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~---neqG~~~~t~G 72 (86)
T PF09707_consen 27 GVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN---NEQGFDFRTLG 72 (86)
T ss_pred CcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC---CCCCEEEEEeC
Confidence 39999999888766555555544433333333322 24589988773
No 186
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=67.38 E-value=7.8 Score=30.86 Aligned_cols=49 Identities=24% Similarity=0.187 Sum_probs=34.2
Q ss_pred CCHHHHHHHhhcC-CCeeEEEEccCCCCC--CcceEEEEEEecHHHHHHHHhh
Q 025549 27 TTADDLFPLFEKY-GKVVDVFIPRDRRTG--DSRGFAFVRYKYADEAQKAVDR 76 (251)
Q Consensus 27 ~t~~~L~~~f~~~-G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~A~~Ai~~ 76 (251)
+|+++|.++..-. |++.+|.+-... .+ ..+|-.||+|...+.|.++++.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4555555555422 688888775543 33 4578899999999999998774
No 187
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=66.99 E-value=20 Score=27.79 Aligned_cols=34 Identities=12% Similarity=0.357 Sum_probs=25.7
Q ss_pred eeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC
Q 025549 42 VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 42 i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
|..|.++.. ..||.||+....+++..+|..+.+.
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCCE
Confidence 555555443 4599999999889999999877664
No 188
>PHA03008 hypothetical protein; Provisional
Probab=66.99 E-value=13 Score=30.19 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=36.9
Q ss_pred CCCCCCCCCCCCCC-CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccC
Q 025549 1 MSHFGKSGPPDIRD-TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRD 50 (251)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~ 50 (251)
|++...+....+.+ +-.+||.|+..--...-|+.||.+|..+.+|-++..
T Consensus 6 msn~n~p~~~~~~~~~d~~~~snit~~h~~n~i~~ff~~~d~~~~~ifvpg 56 (234)
T PHA03008 6 MSNINLPRNNKIDEICDIAFISNITHIHDHNIIKIFFDKFDDFDEIIFVPG 56 (234)
T ss_pred ecccCCccccCCcccccEEEEecccccccccHHHHHHhhccccceEEEccC
Confidence 45555444434433 447899999998899999999999998888876653
No 189
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=65.92 E-value=22 Score=26.47 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=36.0
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe--c------HHHHHHHHhhhCCCccCCceEE
Q 025549 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK--Y------ADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~--~------~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
.||||++|.....+.|++. .+..|..+.-... .....++-|+.|. + .+....|++.++...-.|.+|.
T Consensus 7 ~l~~G~~~~~~~~~~l~~~--gi~~Vi~l~~~~~--~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~Vl 82 (138)
T smart00195 7 HLYLGSYSSALNLALLKKL--GITHVINVTNEVP--NLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVL 82 (138)
T ss_pred CeEECChhHcCCHHHHHHc--CCCEEEEccCCCC--CCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEE
Confidence 3999999976654444332 3334444432211 1122344555443 2 1223444554444444667777
Q ss_pred EEecc
Q 025549 89 VQFAK 93 (251)
Q Consensus 89 v~~a~ 93 (251)
|....
T Consensus 83 VHC~~ 87 (138)
T smart00195 83 VHCQA 87 (138)
T ss_pred EECCC
Confidence 76543
No 190
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=65.27 E-value=35 Score=22.74 Aligned_cols=64 Identities=13% Similarity=0.129 Sum_probs=40.6
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC
Q 025549 17 SLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
+|.|......---.+|...|...| .|..+.+......+......-|+..+.++....|..|...
T Consensus 8 ~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i 72 (80)
T PF13291_consen 8 RLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQI 72 (80)
T ss_dssp EEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTS
T ss_pred EEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCC
Confidence 455555554445678888898876 6788877664323344444555667888888888877654
No 191
>PRK02302 hypothetical protein; Provisional
Probab=64.81 E-value=26 Score=24.58 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=36.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCcc
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i 82 (251)
+.+-+||+..|-. ...+.+||.|..+.-.. .| .|.|.+.++|++.++.|....|
T Consensus 7 R~glIVyl~~~k~-------~r~LrkfG~I~Y~Skk~--------kY-vvlYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 7 RIGLIVYLYYNRD-------ARKLSKYGDIVYHSKRS--------RY-LVLYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred eeEEEEEEeecHh-------HHHHhhcCcEEEEeccc--------cE-EEEEECHHHHHHHHHHHhcCCC
Confidence 4466777766543 23467999998874322 23 4568899999999998876643
No 192
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=64.00 E-value=22 Score=25.68 Aligned_cols=44 Identities=16% Similarity=0.256 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHh
Q 025549 29 ADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 29 ~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 75 (251)
+.+|..++..+| |.+-.|..+.. .+.-||+++|.+.+..-++|.
T Consensus 26 WPE~~a~lk~ag-i~nYSIfLde~--~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 26 WPELLALLKEAG-IRNYSIFLDEE--ENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred cHHHHHHHHHcC-CceeEEEecCC--cccEEEEEEEcChHHHHHHHh
Confidence 457888899988 44444544432 234799999996555555443
No 193
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=63.34 E-value=22 Score=33.28 Aligned_cols=49 Identities=20% Similarity=0.235 Sum_probs=35.3
Q ss_pred HHHHHHHhh----cCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025549 29 ADDLFPLFE----KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 29 ~~~L~~~f~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
.-+|..+|. .+|.|+.+.|...+. .....+.++.|.+.++|..|+..+-
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHHHH
Confidence 456777765 678888887776543 2334677889999999999887653
No 194
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.91 E-value=11 Score=35.07 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=44.3
Q ss_pred EEEecCCCCC---CHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceE
Q 025549 18 LLVLNITFRT---TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (251)
Q Consensus 18 l~V~nLp~~~---t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l 87 (251)
=+||||+.-. ....|..+-.+||.|..+.+-.. -.|...+.+.|++|+. -++..+.+++.
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 3578887543 33556666679999998877322 4788889999999998 47888888775
No 195
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=62.48 E-value=12 Score=32.64 Aligned_cols=11 Identities=45% Similarity=0.612 Sum_probs=5.2
Q ss_pred EEEEEecHHHH
Q 025549 60 AFVRYKYADEA 70 (251)
Q Consensus 60 afV~f~~~~~A 70 (251)
.||.|.-+.-|
T Consensus 176 v~vry~pe~iA 186 (367)
T KOG0835|consen 176 VFVRYSPESIA 186 (367)
T ss_pred eeeecCHHHHH
Confidence 45555544333
No 196
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=62.37 E-value=49 Score=22.87 Aligned_cols=55 Identities=9% Similarity=0.060 Sum_probs=35.3
Q ss_pred EEEEecCCCCCCHHHHHHHhh----cCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025549 17 SLLVLNITFRTTADDLFPLFE----KYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~----~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
-|+|..++..++.++|.+.+. ..- ....++++.. .| -.|+|.+.++.+.|+..+.
T Consensus 10 di~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DE--EG-----Dp~tiSS~~EL~EA~rl~~ 69 (83)
T cd06404 10 DIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDE--EG-----DPCTISSQMELEEAFRLYE 69 (83)
T ss_pred cEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECC--CC-----CceeecCHHHHHHHHHHHH
Confidence 478888998888877665553 221 2233333322 23 4678899999999988654
No 197
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=62.02 E-value=9.5 Score=27.17 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=17.2
Q ss_pred ceEEEEEEecHHHHHHHHhhh
Q 025549 57 RGFAFVRYKYADEAQKAVDRL 77 (251)
Q Consensus 57 ~g~afV~f~~~~~A~~Ai~~l 77 (251)
.-|.+|+|.+.+.+.+|+..+
T Consensus 66 VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 66 VVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEcCchhHHHHHHHHh
Confidence 458999999999888887653
No 198
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=61.51 E-value=1.6 Score=28.86 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=34.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeE-EEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025549 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVD-VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
..+.|.|+.+......+.+...|...|.-.. +.+... +..-...+-.|.+.++|+.++..|.
T Consensus 3 ~~y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~---~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 3 SGYYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKG---GPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp -EEEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEE---TTCEEEEECCECTCCHHHHHHHHHH
T ss_pred CcEEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecC---CceEEEEECCCCCHHHHHHHHHHHh
Confidence 3578888888765555555555555554322 222211 1111223347899999999998887
No 199
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=60.33 E-value=31 Score=23.10 Aligned_cols=44 Identities=23% Similarity=0.313 Sum_probs=28.6
Q ss_pred HHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025549 30 DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 30 ~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
.+|.+++..+| +..+.|.-- ..| +++|+.|.+.+.++.+++.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGs-G~G---~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGS-GGG---PTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETT-SSS---SEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCC-CCC---CeEEEEECCHHHHHHHHHHHH
Confidence 45677778888 444444321 012 678888888888888877663
No 200
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=60.06 E-value=11 Score=32.90 Aligned_cols=33 Identities=27% Similarity=0.203 Sum_probs=24.7
Q ss_pred EEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025549 60 AFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 60 afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
|||+|++..+|+.|++.+.... +..+.|+.|.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC
Confidence 7999999999999999655543 34456766653
No 201
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=58.68 E-value=12 Score=31.73 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=23.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCe
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKV 42 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i 42 (251)
.....|+|||++++-.-|..++...-.+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 3467899999999999999998776544
No 202
>PF05727 UPF0228: Uncharacterised protein family (UPF0228); InterPro: IPR008887 This small family of proteins is currently restricted to Methanosarcina species. Members of this family are about 200 residues in length, except for Q8TMK1 from SWISSPROT that has two copies of this region. Although the function of this region is unknown the pattern of conservation suggests that this may be an enzyme, including multiple conserved aspartate and glutamate residues. The most conserved motif in these proteins is NEL/MEXNE/D, where X can be any amino acid, and is found at the C terminus of these proteins.
Probab=58.47 E-value=27 Score=26.05 Aligned_cols=62 Identities=11% Similarity=0.333 Sum_probs=32.3
Q ss_pred EEecCCC-CCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHH-----HHHHHhhhCCCccCCceEEEEe
Q 025549 19 LVLNITF-RTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADE-----AQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 19 ~V~nLp~-~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~-----A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
||--|+. .+..+.+.++|.++. +|..+. +|+|.|.+... -+.|+..-|..+.+...|.|.+
T Consensus 55 yiI~vSEqai~d~~FL~iL~K~nLqvKKfV------------wCyI~f~dgs~nywIpe~DAirIKnELE~NE~il~V~~ 122 (127)
T PF05727_consen 55 YIIMVSEQAIEDKNFLEILEKYNLQVKKFV------------WCYIRFGDGSKNYWIPEKDAIRIKNELEMNEKILIVYL 122 (127)
T ss_pred EEEEeehhhcCchhHHHHHHhcCcceeEEE------------EEEEEcCCCCcccccchHHHHHHHHHHhcCCcEEEEEe
Confidence 4444553 344557788888876 333332 36666643322 1334443344444556677765
Q ss_pred c
Q 025549 92 A 92 (251)
Q Consensus 92 a 92 (251)
.
T Consensus 123 d 123 (127)
T PF05727_consen 123 D 123 (127)
T ss_pred c
Confidence 3
No 203
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=58.47 E-value=66 Score=23.04 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=42.7
Q ss_pred CCCcEEEEecCCCCC---CHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCC
Q 025549 13 RDTYSLLVLNITFRT---TADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~---t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g 84 (251)
.+...|.|......+ +..+|..++..-| .++.+.... +...|.|.+.++-..|.+.|....-.+
T Consensus 29 ge~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i~~~~--------~~llirf~~~~~Ql~Ak~~L~~~L~~~ 96 (101)
T PF13721_consen 29 GEDPAVQISASSAGVQLPDAFQVEQALKAAGIAVKSIEQEG--------DSLLIRFDSTDQQLKAKDVLSKALGDD 96 (101)
T ss_pred CCCCcEEEecCCCCccCChHHHHHHHHHHCCCCcceEEeeC--------CEEEEEECCHHHHHHHHHHHHHHcCCC
Confidence 455678888754332 2358888998888 345555422 458999999999888888776544333
No 204
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=58.41 E-value=57 Score=26.07 Aligned_cols=6 Identities=33% Similarity=0.578 Sum_probs=2.5
Q ss_pred EEEecc
Q 025549 88 TVQFAK 93 (251)
Q Consensus 88 ~v~~a~ 93 (251)
.|+|..
T Consensus 51 FVEFed 56 (195)
T KOG0107|consen 51 FVEFED 56 (195)
T ss_pred EEeccC
Confidence 344443
No 205
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=57.61 E-value=24 Score=28.28 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=39.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCC-CCcceEEEEEEecHHHHHHHHhhh
Q 025549 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRT-GDSRGFAFVRYKYADEAQKAVDRL 77 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~-g~~~g~afV~f~~~~~A~~Ai~~l 77 (251)
.+=||+|.....+-..|-+.|...|- .|.++..+.. ..+.++-+|.|.+.++..+++..+
T Consensus 19 ~VR~ItN~SSG~~G~~lA~~~~~~Ga--~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~ 79 (185)
T PF04127_consen 19 PVRFITNRSSGKMGAALAEEAARRGA--EVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKEL 79 (185)
T ss_dssp SSEEEEES--SHHHHHHHHHHHHTT---EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHH
T ss_pred CceEecCCCcCHHHHHHHHHHHHCCC--EEEEEecCccccccccceEEEecchhhhhhhhccc
Confidence 35689999999888999999988883 3333333322 224578899999999998888754
No 206
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=56.78 E-value=59 Score=21.99 Aligned_cols=61 Identities=15% Similarity=0.071 Sum_probs=37.5
Q ss_pred EEEecCCCCCCHHHHHHHhhc-------CCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCc
Q 025549 18 LLVLNITFRTTADDLFPLFEK-------YGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV 81 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~-------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (251)
|...+||..+|.++|..+... +..|..+........ .+-||+.+=.+.+...++.+. .|..
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~--~k~~Cly~Ap~~eaV~~~~~~-aG~p 70 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDD--GKIFCLYEAPDEEAVREHARR-AGLP 70 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCC--CeEEEEEECCCHHHHHHHHHH-cCCC
Confidence 556789988999998876643 334555544433222 235666666687777776664 3543
No 207
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=56.55 E-value=34 Score=25.32 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=28.3
Q ss_pred CCCHHHHHHHhhcC-C----CeeEEEEccCCCCCCcceEEEEEEecHHHHHHH
Q 025549 26 RTTADDLFPLFEKY-G----KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKA 73 (251)
Q Consensus 26 ~~t~~~L~~~f~~~-G----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 73 (251)
.+..+||.+-+.+. - .|.-+.+-....+|...|||+| |.+.+.|.+.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 46777777766542 1 2333344445556778888876 6776665543
No 208
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=56.28 E-value=16 Score=24.72 Aligned_cols=61 Identities=15% Similarity=0.290 Sum_probs=38.6
Q ss_pred ecCCCCCCHHHHHHHhh-cCCC---eeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025549 21 LNITFRTTADDLFPLFE-KYGK---VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 21 ~nLp~~~t~~~L~~~f~-~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
-.++..++.++|...+. .||. ...+.+..+ . | -+|.+.+.++.+.|++.+... ++..|.|.
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~--d----g-D~V~i~sd~Dl~~a~~~~~~~--~~~~lrl~ 80 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDE--D----G-DLVTISSDEDLQEAIEQAKES--GSKTLRLF 80 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEET--T----S-SEEEESSHHHHHHHHHHHHHC--TTSCEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCC--C----C-CEEEeCCHHHHHHHHHHHHhc--CCCcEEEE
Confidence 56677778888877764 3554 233333222 2 2 699999999999999976543 33344443
No 209
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=55.63 E-value=48 Score=20.63 Aligned_cols=47 Identities=15% Similarity=0.306 Sum_probs=27.1
Q ss_pred CHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEe-cHHHHHHHHhhh
Q 025549 28 TADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYK-YADEAQKAVDRL 77 (251)
Q Consensus 28 t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~-~~~~A~~Ai~~l 77 (251)
.-.+|..+|...| .|..+.+...... .+++|+.+. +...++.+++.|
T Consensus 13 ~l~~v~~~la~~~inI~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l 61 (66)
T PF01842_consen 13 ILADVTEILADHGINIDSISQSSDKDG---VGIVFIVIVVDEEDLEKLLEEL 61 (66)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEEESST---TEEEEEEEEEEGHGHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHeEEEecCCC---ceEEEEEEECCCCCHHHHHHHH
Confidence 4567888888887 5666666554321 244544443 555555555544
No 210
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=55.51 E-value=24 Score=26.40 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=24.4
Q ss_pred EEEEEec--------HHHHHHHHhhhCCCccCCceEEEEecc
Q 025549 60 AFVRYKY--------ADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 60 afV~f~~--------~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
|||+|++ .+-|...++.+|...--|..|.|..-.
T Consensus 21 AFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~ 62 (129)
T COG1098 21 AFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLD 62 (129)
T ss_pred eEEEecCCCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEEe
Confidence 7888876 356777777777776677777777654
No 211
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.87 E-value=49 Score=20.76 Aligned_cols=58 Identities=5% Similarity=0.160 Sum_probs=28.8
Q ss_pred EEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025549 18 LLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
|.|......-...+|..+|..+| .|..+.+... .+...++..|.+.+. +...+++.|.
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~--~~~~~~~i~i~v~~~-~~~~~i~~l~ 60 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRK--EKGDQALMVIEVDQP-IDEEVIEEIK 60 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEec--cCCCeEEEEEEeCCC-CCHHHHHHHH
Confidence 33333333335677888888876 5666654331 112223344555543 4444444443
No 212
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=54.54 E-value=36 Score=21.04 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=22.3
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCe
Q 025549 16 YSLLVLNITFRTTADDLFPLFEKYGKV 42 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i 42 (251)
..++|.+.......++|.+++..+|..
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 567888887678899999999999853
No 213
>PF11284 DUF3085: Protein of unknown function (DUF3085); InterPro: IPR021436 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=54.54 E-value=73 Score=22.39 Aligned_cols=61 Identities=20% Similarity=0.097 Sum_probs=38.7
Q ss_pred CCCCCCCCCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025549 1 MSHFGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
|++.+...++..+....+|-.+..+.++++-....-..|| |--|++|-+......+|..-.
T Consensus 14 msn~~~~~~~G~r~~~vaYA~gCnP~~d~dww~~ar~~~G-----------------GDDf~e~id~~~~~~~l~~~~ 74 (90)
T PF11284_consen 14 MSNGGERLPDGERPKLVAYAEGCNPDTDDDWWDRARAEFG-----------------GDDFAEFIDASWFERALAAGP 74 (90)
T ss_pred EeCCCccCCCCccceEEEEeeccCCCcChhHHHHHHHHcC-----------------CcceeEEECHHHHHHHHHcCC
Confidence 4554443444434457889999999988444333334555 335888888877778877433
No 214
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=54.48 E-value=28 Score=31.59 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=35.2
Q ss_pred CCCHHHHHHHhh----cCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhh
Q 025549 26 RTTADDLFPLFE----KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (251)
Q Consensus 26 ~~t~~~L~~~f~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (251)
....-+|..+|. .+|.|+.+.|...+. .....+.++.|.+.++|.+|+..+
T Consensus 143 ~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~-p~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 143 DVAGYDLTGLFVGSEGTLGIVTEATLKLLPK-PENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred CCCCCChhhhcccCCccceEEEEEEEEeecC-CCccEEEEEECCCHHHHHHHHHHH
Confidence 333446777774 378888888776543 334466788999999999887554
No 215
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=54.40 E-value=38 Score=26.88 Aligned_cols=76 Identities=9% Similarity=0.064 Sum_probs=41.4
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe-cHH---HHHHHHhhhCCCccCCceEEEEec
Q 025549 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK-YAD---EAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~-~~~---~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
+|.|.==|..++.++|.++|-..-..+.+.-.- +.....|--+.|. +.+ .|++.+++|....+.+.+|++++.
T Consensus 59 ~V~V~yDp~~isy~~LL~~ff~ihDPT~~nrQG---nD~GtqYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~IvteI~ 135 (174)
T COG0225 59 AVEVTYDPKVISYEELLEVFFEIHDPTSLNRQG---NDRGTQYRSAIYYTNEEQKAIAEASIEELQASGYFKKPIVTEIE 135 (174)
T ss_pred EEEEEeCCccccHHHHHHHHheecCCCCCCccC---CcccccceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEEee
Confidence 566666677888888888886543222221100 1111224333443 444 444555666665666778888876
Q ss_pred cCC
Q 025549 93 KYG 95 (251)
Q Consensus 93 ~~~ 95 (251)
...
T Consensus 136 p~~ 138 (174)
T COG0225 136 PAK 138 (174)
T ss_pred ccc
Confidence 543
No 216
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=53.90 E-value=47 Score=22.07 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=34.4
Q ss_pred ecCC-CCCCHHHHHHHhh-cCCCe-eEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025549 21 LNIT-FRTTADDLFPLFE-KYGKV-VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 21 ~nLp-~~~t~~~L~~~f~-~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
..++ ..++.++|...+. .|+.. ..+.|...... | .+|...+.++.+.|++.+.
T Consensus 14 ~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e----~-d~v~l~sd~Dl~~a~~~~~ 69 (81)
T cd05992 14 FVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDED----G-DLVTISSDEDLEEAIEEAR 69 (81)
T ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCC----C-CEEEeCCHHHHHHHHHHHh
Confidence 3445 7888888887774 45532 23333322122 2 7899999999999999765
No 217
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=53.58 E-value=5.1 Score=26.48 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=26.8
Q ss_pred HHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025549 30 DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 30 ~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
++|++.|..++....+.- -.+|..|.+.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~vk----------L~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVK----------LKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhh----------hhhccCCCCHHHHHHHHHHhh
Confidence 688888876654433311 128999999999888877654
No 218
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=53.35 E-value=5.1 Score=30.56 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=41.4
Q ss_pred EEEecCC--CCCCHHHHHHHhhc----CCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025549 18 LLVLNIT--FRTTADDLFPLFEK----YGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 18 l~V~nLp--~~~t~~~L~~~f~~----~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
..|+.+. ..++...|...+.. .|.+.-..+-. ++.++.|.+.++++.++. .....|+|..|.++.
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~~--------~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~ 88 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLGD--------NLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQR 88 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeCC--------CeEEEEEEeccceeEEEe-cccccccccchhhhh
Confidence 4444442 24566666666643 34444333321 789999999999999987 455566776666654
Q ss_pred cc
Q 025549 92 AK 93 (251)
Q Consensus 92 a~ 93 (251)
-.
T Consensus 89 W~ 90 (153)
T PF14111_consen 89 WS 90 (153)
T ss_pred hc
Confidence 43
No 219
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=53.15 E-value=26 Score=24.97 Aligned_cols=49 Identities=10% Similarity=0.028 Sum_probs=28.9
Q ss_pred EEEEecCCCCCCHHHHH---HHhhcCCCeeEEEE--ccCCCCCCcceEEEEEEe
Q 025549 17 SLLVLNITFRTTADDLF---PLFEKYGKVVDVFI--PRDRRTGDSRGFAFVRYK 65 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~---~~f~~~G~i~~v~i--~~~~~~g~~~g~afV~f~ 65 (251)
..|+.|||..+.+.++. .+|..++.-..|.+ ......+...|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 56889999998876654 55556654444443 223345556677766554
No 220
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=52.98 E-value=28 Score=23.13 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHhhcCCCeeEEEE-ccCCCCCCcceEEEEEEe-cHHHHHHHHhhhCC
Q 025549 25 FRTTADDLFPLFEKYGKVVDVFI-PRDRRTGDSRGFAFVRYK-YADEAQKAVDRLDG 79 (251)
Q Consensus 25 ~~~t~~~L~~~f~~~G~i~~v~i-~~~~~~g~~~g~afV~f~-~~~~A~~Ai~~l~g 79 (251)
..+.+..|.++...||.-.+|.. ..+...+...|+-+|++. +.++.++|++.|..
T Consensus 12 ~~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~ 68 (76)
T PF09383_consen 12 NSAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLRE 68 (76)
T ss_dssp CSSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred CCcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHH
Confidence 45566677777778874333211 112234566788899996 44556778776653
No 221
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=52.55 E-value=79 Score=25.11 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=32.2
Q ss_pred CCcEEEEecCCCC-CCHHHHHHHhh------c----CCCeeEEEEccCCCCCCcceEEEEEEe----cHHHHHHHHhh
Q 025549 14 DTYSLLVLNITFR-TTADDLFPLFE------K----YGKVVDVFIPRDRRTGDSRGFAFVRYK----YADEAQKAVDR 76 (251)
Q Consensus 14 ~~~~l~V~nLp~~-~t~~~L~~~f~------~----~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~A~~Ai~~ 76 (251)
.++.|+|.-+|.. +|+.-+..... . ||.+........+ |..++++. +.+.|+.||..
T Consensus 80 ~~~k~wIrvfP~~~lt~kp~~~rmGAdRmg~GMr~akG~p~~wva~Vk~------G~ilfei~~~~~~~~~akeAlr~ 151 (172)
T PRK04199 80 SNYHLKIRVYPHHVLRENKMATGAGADRVSDGMRLAFGKPVGTAARVEK------GQKIFTVRVNPEHLEAAKEALRR 151 (172)
T ss_pred cccEEEEEeCCCcceecChhHhhcchhhhccCcccCCCCccEEEEEECc------CCEEEEEEecCCCHHHHHHHHHH
Confidence 4567777777743 34444433222 2 6766554333332 44666665 67788888874
No 222
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=52.50 E-value=30 Score=23.87 Aligned_cols=66 Identities=24% Similarity=0.236 Sum_probs=25.1
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec----HHHHHHHHhhhCCCccCCceEEEE
Q 025549 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
|.+++|.++-. .+++-.+..-..|-.+.|... . -.|||.|+. .+....+++.|....+.-+.|.|+
T Consensus 3 lkfg~It~eeA-~~~QYeLsk~~~vyRvFiNgY-----a-r~g~VifDe~kl~~e~lL~~le~~kpEVi~ek~lTve 72 (88)
T PF11491_consen 3 LKFGNITPEEA-MVKQYELSKNEAVYRVFINGY-----A-RNGFVIFDESKLSKEELLEMLEEFKPEVIEEKELTVE 72 (88)
T ss_dssp EE--S-TTTTT-HHHHHTTTTTTTB------TT-----S-S--EEE--B-S-SHHHH---HHHTTT-SS-------S
T ss_pred cccCCCCHHHH-HHHHHHhhcccceeeeeeccc-----c-cceEEEECcccCCHHHHHHHHHhcChhheeeccccHH
Confidence 55677776532 234444555556655555322 2 348999984 477778888888887777777664
No 223
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=51.96 E-value=77 Score=21.88 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=22.1
Q ss_pred CCCHHHHHHHhhc-CC----CeeEEEEccCCCCCCcceEEEEEEecHHHHHH
Q 025549 26 RTTADDLFPLFEK-YG----KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQK 72 (251)
Q Consensus 26 ~~t~~~L~~~f~~-~G----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 72 (251)
..+..+|++.+.. |+ .|.-..|......+...|||+| |++.+.++.
T Consensus 12 Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 12 TPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp S--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 4456777766643 33 2222334343333444556554 566655554
No 224
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=51.89 E-value=22 Score=25.43 Aligned_cols=47 Identities=13% Similarity=0.049 Sum_probs=26.2
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec
Q 025549 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY 66 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 66 (251)
-|||+++...+-+.-...+.+.++.=.-+.+..+ ....||+|.++-+
T Consensus 29 GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~---~~eqG~~~~t~G~ 75 (97)
T PRK11558 29 GVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT---NTESGFEFQTFGE 75 (97)
T ss_pred CcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC---CCCCCcEEEecCC
Confidence 3999999987765544444444433222222222 2233899887765
No 225
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=51.54 E-value=57 Score=23.10 Aligned_cols=57 Identities=12% Similarity=0.214 Sum_probs=31.5
Q ss_pred EEEEecCCCCCCHHHHHHHh-------hcC-CCeeEEEEccCC-----CCCCcce-EEEEEEecHHHHHHHHh
Q 025549 17 SLLVLNITFRTTADDLFPLF-------EKY-GKVVDVFIPRDR-----RTGDSRG-FAFVRYKYADEAQKAVD 75 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f-------~~~-G~i~~v~i~~~~-----~~g~~~g-~afV~f~~~~~A~~Ai~ 75 (251)
++|| |.++++++++.+++ ... |+|..+..+-.. ..+...| |.++.|.-..++.+.|+
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 4555 34555666655544 343 466666543211 2233445 57888887666666655
No 226
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=51.33 E-value=9.3 Score=26.78 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=20.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhh
Q 025549 14 DTYSLLVLNITFRTTADDLFPLFE 37 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~ 37 (251)
...+|.|.|||..+.+++|++.++
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEE
Confidence 356899999999999999987653
No 227
>PF14893 PNMA: PNMA
Probab=51.23 E-value=23 Score=31.23 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=43.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhc----CCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEK----YGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~----~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
..-..|.|.+||.+|++++|++.+.. +|...-+.-+.-... +.-.|+|+|...-+-...=..+ .-.|.+-.
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~--~~~aalve~~e~~n~~~iP~~i---~g~gg~W~ 90 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREE--NAKAALVEFAEDVNYSLIPREI---PGKGGPWR 90 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhc--ccceeeeecccccchhhCchhc---CCCCCceE
Confidence 34456999999999999998888754 443322211111111 1245888887543322211111 12455566
Q ss_pred EEeccCCCch
Q 025549 89 VQFAKYGPNA 98 (251)
Q Consensus 89 v~~a~~~~~~ 98 (251)
|-|....+..
T Consensus 91 Vv~~p~~~D~ 100 (331)
T PF14893_consen 91 VVFKPPAPDA 100 (331)
T ss_pred EEecCCCCCH
Confidence 6665554444
No 228
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=51.17 E-value=58 Score=20.27 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=20.3
Q ss_pred EEEecCCCCCCHHHHHHHhhcCC-CeeEEEEcc
Q 025549 18 LLVLNITFRTTADDLFPLFEKYG-KVVDVFIPR 49 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~ 49 (251)
|+|..-...-.-.+|..+|.++| .|..+.+..
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~ 34 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGR 34 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEec
Confidence 34433344445678888998887 677776644
No 229
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=51.06 E-value=53 Score=30.08 Aligned_cols=68 Identities=22% Similarity=0.128 Sum_probs=44.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCC----CeeEEEEccCCCCCC--------cceEEEEEEecHHHHHHHHhhhCCC
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYG----KVVDVFIPRDRRTGD--------SRGFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G----~i~~v~i~~~~~~g~--------~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
.++.+|.+.+=-+-++.+.|++++..+. .+.-+.+..+.++|. ..-.++||..+..++++.|..+|..
T Consensus 95 ~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~eek~I~eiNtG 174 (460)
T COG1207 95 YDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKEINTG 174 (460)
T ss_pred CCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHHhcCcEEeee
Confidence 4456777777777889999998886652 333333333333432 1337888999888888888877754
No 230
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=50.46 E-value=69 Score=20.94 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=30.7
Q ss_pred CHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEec---HHHHHHHHhhhCC
Q 025549 28 TADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKY---ADEAQKAVDRLDG 79 (251)
Q Consensus 28 t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~---~~~A~~Ai~~l~g 79 (251)
.-.+|.+.|..+| .|..|.-.... .....-..||+++. ....+.+++.|..
T Consensus 12 ~L~~vL~~f~~~~vni~~I~Srp~~-~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 12 ALAKALKVFAERGINLTKIESRPSR-KGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecC-CCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4577888898887 56666433322 11223456788874 5566677776654
No 231
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=50.25 E-value=15 Score=34.22 Aligned_cols=37 Identities=27% Similarity=0.491 Sum_probs=32.7
Q ss_pred eEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025549 58 GFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 58 g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
.|+++.|++...+.+|+..++|..+.+..+.|..+..
T Consensus 64 ~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~ 100 (534)
T KOG2187|consen 64 KYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGAT 100 (534)
T ss_pred CceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccc
Confidence 7899999999999999999999998888877776653
No 232
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=50.06 E-value=40 Score=23.48 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=34.6
Q ss_pred EEEecCCCCCCHHHHHHHhh-cCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhh
Q 025549 18 LLVLNITFRTTADDLFPLFE-KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (251)
|.+.-||..++.++|.+.+. .||.-..+.|..... | .+|+..+.++.+.||...
T Consensus 13 v~~i~v~~~i~f~dL~~kIrdkf~~~~~~~iKykDE-G-----D~iti~sq~DLd~Ai~~a 67 (86)
T cd06408 13 TRYIMIGPDTGFADFEDKIRDKFGFKRRLKIKMKDD-G-----DMITMGDQDDLDMAIDTA 67 (86)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCCceEEEEEcC-C-----CCccccCHHHHHHHHHHH
Confidence 55667888888888776663 444323333332212 3 688888999888888754
No 233
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.04 E-value=65 Score=20.52 Aligned_cols=49 Identities=16% Similarity=0.321 Sum_probs=28.4
Q ss_pred CHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025549 28 TADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 28 t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
.-.+|..+|.++| .|..+.+..... + ..+...|.+...++.+.+++.|.
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~-~-~~~~~~i~v~~~~~~~~~~~~L~ 63 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIRE-G-IGGILRISFKTQEDRERAKEILK 63 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeec-C-CcEEEEEEECCHHHHHHHHHHHH
Confidence 4567888898887 566665443211 1 23555677755555555555543
No 234
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=49.72 E-value=35 Score=34.23 Aligned_cols=34 Identities=12% Similarity=0.345 Sum_probs=26.4
Q ss_pred CcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025549 55 DSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 55 ~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
..+||.|||-......+.||+.|-+..+. +.|.|
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~-~~~lV 241 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYAN-RILLV 241 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheec-cEEEE
Confidence 35599999999999999999988776555 44444
No 235
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=49.60 E-value=38 Score=23.26 Aligned_cols=26 Identities=12% Similarity=0.316 Sum_probs=21.6
Q ss_pred cceEEEEEEecHHHHHHHHhhhCCCc
Q 025549 56 SRGFAFVRYKYADEAQKAVDRLDGRV 81 (251)
Q Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (251)
.+||.|||=.+..++..|+..+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 56999999999999999998776553
No 236
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=49.04 E-value=86 Score=21.59 Aligned_cols=64 Identities=13% Similarity=0.040 Sum_probs=36.7
Q ss_pred EecCCC--CCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025549 20 VLNITF--RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 20 V~nLp~--~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
+-.|++ .+++++|.+.+...-.+..+.|..-...+ =.|...+..+.+.|+..+.. .|..|.++.
T Consensus 13 rf~~~~~~~~~~~~L~~ev~~rf~l~~f~lKYlDde~-----e~v~lssd~eLeE~~rl~~~---~~~~l~~~v 78 (81)
T cd06396 13 SFLVSDSENTTWASVEAMVKVSFGLNDIQIKYVDEEN-----EEVSVNSQGEYEEALKSAVR---QGNLLQMNV 78 (81)
T ss_pred EEEecCCCCCCHHHHHHHHHHHhCCCcceeEEEcCCC-----CEEEEEchhhHHHHHHHHHh---CCCEEEEEE
Confidence 334566 78999988888643222233333211122 46777778888888885543 345555543
No 237
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=48.82 E-value=40 Score=25.70 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=33.5
Q ss_pred CCCCCCCCCCCC-CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEc
Q 025549 1 MSHFGKSGPPDI-RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIP 48 (251)
Q Consensus 1 ~~~~~~~~~~~~-~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~ 48 (251)
|+.|..+.|... -......|+.-|.++|-+...+.+.+||.-+-|.+.
T Consensus 1 ~a~mnrPAPveIsy~~MrFLIThnPtnaTln~fieELkKygvttvVRVC 49 (173)
T KOG2836|consen 1 SARMNRPAPVEISYKNMRFLITHNPTNATLNKFIEELKKYGVTTVVRVC 49 (173)
T ss_pred CCcccCCCCeeeeccceEEEEecCCCchhHHHHHHHHHhcCCeEEEEec
Confidence 344555555443 345677888889999999999999999965444443
No 238
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=48.57 E-value=43 Score=31.81 Aligned_cols=49 Identities=14% Similarity=0.166 Sum_probs=34.9
Q ss_pred CHHHHHHHh----hcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhh
Q 025549 28 TADDLFPLF----EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (251)
Q Consensus 28 t~~~L~~~f----~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (251)
+..+|..+| ..+|.|+++.|...+ ......++++.|.+.++|.+|+..+
T Consensus 279 ~g~dL~~l~~GseGtLGIIT~~tlrl~p-~P~~~~~~~~~f~~~~~a~~av~~i 331 (555)
T PLN02805 279 AGYDLTRLVIGSEGTLGVITEVTLRLQK-IPQHSVVAMCNFPTIKDAADVAIAT 331 (555)
T ss_pred CCccHHHHhccCCCceEEEEEEEEEeec-CCcceEEEEEEcCCHHHHHHHHHHH
Confidence 345777777 357888888876543 2334467889999999998887664
No 239
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=47.53 E-value=65 Score=24.47 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=20.6
Q ss_pred cceEEEEEEecHHHHHHHHhhhCCC
Q 025549 56 SRGFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
..||.||++....+...+|..+.|.
T Consensus 37 fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 37 LKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred CCcEEEEEEECcHHHHHHHhCCCCE
Confidence 6699999999888888888777664
No 240
>KOG0829 consensus 60S ribosomal protein L18A [Translation, ribosomal structure and biogenesis]
Probab=47.38 E-value=23 Score=27.44 Aligned_cols=72 Identities=15% Similarity=0.241 Sum_probs=42.1
Q ss_pred CCCCCCCCCCCcEEEEecCC--CC-CCH-------HHHHHHhhcCCCeeEEEEccCCCCCCcceEE-EEEEecHHHHHHH
Q 025549 5 GKSGPPDIRDTYSLLVLNIT--FR-TTA-------DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFA-FVRYKYADEAQKA 73 (251)
Q Consensus 5 ~~~~~~~~~~~~~l~V~nLp--~~-~t~-------~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~a-fV~f~~~~~A~~A 73 (251)
|..-|.+..+...||...|= .+ +.. ..|+.+=..-|+|..|.-+..+....-+.|| ++.|.+......+
T Consensus 7 Gr~lPTe~~p~p~l~~m~ifa~N~V~AKsrfwyfl~~l~KvKks~Geiv~i~qi~E~~p~~vkNfGIwlrYdSRsG~HNm 86 (169)
T KOG0829|consen 7 GRALPTEKEPTPKLYRMRIFAPNHVVAKSRFWYFLSKLKKVKKSSGEIVAINQIFEKSPLKVKNFGIWLRYDSRSGTHNM 86 (169)
T ss_pred eeecCCCCCCCCceEEEEEeccceeehhHHHHHHHHHHHHHhhcCceEEEeceecCCCCceeeeeEEEEEEccCCcchHH
Confidence 45556666666667776542 12 222 2333333456999999777766666677787 5667665544444
Q ss_pred Hhh
Q 025549 74 VDR 76 (251)
Q Consensus 74 i~~ 76 (251)
..+
T Consensus 87 YkE 89 (169)
T KOG0829|consen 87 YKE 89 (169)
T ss_pred HHH
Confidence 433
No 241
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=47.29 E-value=81 Score=20.81 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=30.1
Q ss_pred CHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEe-cHHHHHHHHhhhCC
Q 025549 28 TADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYK-YADEAQKAVDRLDG 79 (251)
Q Consensus 28 t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~-~~~~A~~Ai~~l~g 79 (251)
.-.+|.+.|..+| .++.|.--+.+ .....=+-||+|+ ..+..++||+.|..
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSRP~~-~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESRPSR-RNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCC-CCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 3567888888887 45555433221 1112224578887 55566778777754
No 242
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=46.66 E-value=80 Score=22.54 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC
Q 025549 25 FRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 25 ~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
.+-++++|..+...-|.|..|.+... ..| .-.|.+...+..+++.+|+.|+..
T Consensus 7 ~~~~~~EL~~IVd~Gg~V~DV~veHp-~YG--~i~~~L~i~sr~Dv~~Fi~~l~~~ 59 (98)
T PF02829_consen 7 PDEIEDELEIIVDNGGRVLDVIVEHP-VYG--EITGNLNISSRRDVDKFIEKLEKS 59 (98)
T ss_dssp GGGHHHHHHHHHHTT-EEEEEEEEET-TTE--EEEEEEEE-SHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEeCC-CCc--EEEEEEecCCHHHHHHHHHHHhcc
Confidence 34467788888887778888877554 333 345777889999999999987643
No 243
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=45.92 E-value=68 Score=19.52 Aligned_cols=43 Identities=12% Similarity=0.271 Sum_probs=28.1
Q ss_pred HHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHH
Q 025549 29 ADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAV 74 (251)
Q Consensus 29 ~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai 74 (251)
-.+|..+|.+.| .|..+.+.... ...++..+.+++.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~---~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETR---GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEcc---CCcEEEEEEECCHHHHHHHh
Confidence 356667777776 67777655432 23466777788877777665
No 244
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=45.70 E-value=34 Score=31.74 Aligned_cols=50 Identities=22% Similarity=0.182 Sum_probs=32.2
Q ss_pred CCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC
Q 025549 26 RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 26 ~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
.+.+++|.+-|..+-.-.++.-+. |. .|++=+.|.++++|++++++++..
T Consensus 89 liWdqELY~nf~y~q~r~ffhtFe----gd-dc~aGLnF~~E~EA~~F~k~V~~r 138 (569)
T KOG3671|consen 89 LIWDQELYQNFEYRQPRTFFHTFE----GD-DCQAGLNFASEEEAQKFRKKVQDR 138 (569)
T ss_pred eeehHHhhhhceeccCccceeeec----cc-cceeeecccCHHHHHHHHHHHHHH
Confidence 456778888887665433332221 11 156777899999999988876543
No 245
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.51 E-value=56 Score=25.12 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=37.6
Q ss_pred cCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025549 22 NITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 22 nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
.|+..+.++-|+++.+..|.|.++.- .+ ..+.|-+.+..+.||+.+.
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~E-~D---------~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFEE-YD---------LVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEeee-cc---------EEEEeccHHHHHHHHHHHH
Confidence 46777888999999999998877752 22 5678899999999998764
No 246
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=45.42 E-value=83 Score=22.74 Aligned_cols=48 Identities=13% Similarity=0.181 Sum_probs=29.9
Q ss_pred HHHHHHhhcCCCeeEEEEccC-CCC--------------CCcceEEEEEEecHHHHHHHHhhh
Q 025549 30 DDLFPLFEKYGKVVDVFIPRD-RRT--------------GDSRGFAFVRYKYADEAQKAVDRL 77 (251)
Q Consensus 30 ~~L~~~f~~~G~i~~v~i~~~-~~~--------------g~~~g~afV~f~~~~~A~~Ai~~l 77 (251)
+....+|..||-+..+..+.+ -.. +...-|.+|+|.+.+...+++.++
T Consensus 23 ~~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 23 EKAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp HHHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 345678899997655443321 112 223459999999999888887654
No 247
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=45.27 E-value=1e+02 Score=24.46 Aligned_cols=74 Identities=9% Similarity=0.111 Sum_probs=37.9
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEE-EEEEecHHHHHHH---HhhhCCCccCCceEEEEec
Q 025549 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFA-FVRYKYADEAQKA---VDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~a-fV~f~~~~~A~~A---i~~l~g~~i~g~~l~v~~a 92 (251)
.|.|.==|..++.++|.++|-..-..+.+.-.-+ .....|- -|-|.+.++.+.| |+.++...+.+.+|.+++.
T Consensus 56 ~V~V~yDp~~isy~~Ll~~f~~~hDPt~~~~Qg~---D~G~qYRS~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~Tei~ 132 (172)
T PRK14054 56 AVEITYDPAVISYRELLELFFQIHDPTTLNRQGN---DRGTQYRSAIFYHDEEQKEIAEASIAELQASGLFDKPIVTEVE 132 (172)
T ss_pred EEEEEECCCcCCHHHHHHHHHHhCCCCccCCCCC---CCCcCceeEEEeCCHHHHHHHHHHHHHHHHhcccCCCcEEEEe
Confidence 4677666788899999988865433222211100 0112343 3334455554444 4444433324566766665
Q ss_pred c
Q 025549 93 K 93 (251)
Q Consensus 93 ~ 93 (251)
.
T Consensus 133 ~ 133 (172)
T PRK14054 133 P 133 (172)
T ss_pred c
Confidence 4
No 248
>PRK11633 cell division protein DedD; Provisional
Probab=44.95 E-value=68 Score=26.70 Aligned_cols=73 Identities=11% Similarity=0.105 Sum_probs=49.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEE-EEecHHHHHHHHhhhCCC-ccCCceE
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFV-RYKYADEAQKAVDRLDGR-VVDGREI 87 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV-~f~~~~~A~~Ai~~l~g~-~i~g~~l 87 (251)
...+.|.|+-|......+.|..-|..-|--.++.-... ..|.. .-.|| =|.+.+.|+.++..|+.. -|.|..+
T Consensus 147 ~~~~vVQlgaf~n~~~A~~l~~kL~~~G~~Ay~~~~~~-~~G~~-tRV~VGP~~sk~~ae~~~~~Lk~~~Gl~g~Vv 221 (226)
T PRK11633 147 GKAYVVQLGALKNADKVNEIVAKLRLSGYRVYTVPSTP-VQGKI-TRIYVGPDASKDKLKGSLGELKQLSGLSGVVM 221 (226)
T ss_pred CCcEEEEecccCCHHHHHHHHHHHHHCCCeeEEEeeec-CCCcE-EEEEeCCCCCHHHHHHHHHHHHHhcCCCceEE
Confidence 34589999999888888889998888886555543221 12221 11334 467999999999988874 5666543
No 249
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=44.78 E-value=37 Score=26.65 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=25.5
Q ss_pred CCCcEEEEecCCCC---CCHHHHHHHhhcCCCeeEE
Q 025549 13 RDTYSLLVLNITFR---TTADDLFPLFEKYGKVVDV 45 (251)
Q Consensus 13 ~~~~~l~V~nLp~~---~t~~~L~~~f~~~G~i~~v 45 (251)
..+++|||++|... +-...|.+++-+-|.+.++
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~ 64 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYI 64 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEE
Confidence 45899999999853 4456788888888887765
No 250
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=44.74 E-value=25 Score=23.36 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=20.1
Q ss_pred eEEEEEEecHHHHHHHHhhhCCCcc
Q 025549 58 GFAFVRYKYADEAQKAVDRLDGRVV 82 (251)
Q Consensus 58 g~afV~f~~~~~A~~Ai~~l~g~~i 82 (251)
.+.+|.|.+..+|.+|-+.|....|
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 4689999999999999887765533
No 251
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=44.70 E-value=1e+02 Score=21.14 Aligned_cols=56 Identities=11% Similarity=0.221 Sum_probs=31.9
Q ss_pred EEEecCCCCCCHHHHHHHhh-------cCCCeeEEEEccCCCCC---CcceEE-EEEEecHHHHHHH
Q 025549 18 LLVLNITFRTTADDLFPLFE-------KYGKVVDVFIPRDRRTG---DSRGFA-FVRYKYADEAQKA 73 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~-------~~G~i~~v~i~~~~~~g---~~~g~a-fV~f~~~~~A~~A 73 (251)
|.+-.|...++++++.+++. ....|..+.+-.+.... ..-.+| +++|.+.++.+..
T Consensus 4 ivlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y 70 (97)
T PF07876_consen 4 IVLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAY 70 (97)
T ss_dssp EEEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHH
Confidence 44557788888887755443 33456666655443222 122344 5678887776554
No 252
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.48 E-value=1.4e+02 Score=23.56 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=39.7
Q ss_pred EecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025549 20 VLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 20 V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
=-+|+..+.++-|.++.+-+|.|.+. .+ ..-.+.|-+.+..+.||+.|.
T Consensus 116 Rv~l~~~i~~erl~ei~E~~gvI~Ef---ee-------~~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 116 RVKLKKPIQEERLQEISEWHGVIFEF---EE-------DDKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred EEecCccchHHHHHHHHHHhceeEEe---cC-------CcEEEEeccHHHHHHHHHHHH
Confidence 34889999999999999999988776 22 125788899999999998764
No 253
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.47 E-value=85 Score=20.22 Aligned_cols=61 Identities=8% Similarity=-0.051 Sum_probs=35.5
Q ss_pred EEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCC
Q 025549 18 LLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (251)
|.|......-...+|...+...| .|..+.+.... .+......-|+..+.+.+...+..|..
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~vev~~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG-RDYTVRDITVDAPSEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec-CCEEEEEEEEEcCCHHHHHHHHHHHhc
Confidence 45555555556788888888877 67777664322 121111122344577777777766554
No 254
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=44.46 E-value=82 Score=20.06 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=18.6
Q ss_pred EEecCCCCCCHHHHHHHhhcCC-CeeEEEEcc
Q 025549 19 LVLNITFRTTADDLFPLFEKYG-KVVDVFIPR 49 (251)
Q Consensus 19 ~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~ 49 (251)
+|.+-...-.-.+|.++|.++| .|..+.+..
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~ 34 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGR 34 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeec
Confidence 3333333345567888898887 566665533
No 255
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=44.39 E-value=44 Score=23.91 Aligned_cols=78 Identities=10% Similarity=0.117 Sum_probs=41.1
Q ss_pred CcEEEEecCCCCCC--HHHHHHHhhcCCCeeEEEEccCCC-CCCcceEEEEEEecHHHHHHHHhhhC---CCcc-CCceE
Q 025549 15 TYSLLVLNITFRTT--ADDLFPLFEKYGKVVDVFIPRDRR-TGDSRGFAFVRYKYADEAQKAVDRLD---GRVV-DGREI 87 (251)
Q Consensus 15 ~~~l~V~nLp~~~t--~~~L~~~f~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~---g~~i-~g~~l 87 (251)
+..|.|+-.....+ .+.|.++|.+.+.|..+.+..-.. ++...-+-.|+|.. ++.+.++..+. ...+ .+..|
T Consensus 5 g~~v~l~~P~~~p~~l~~aL~~~~~~~~~V~~Ayl~~~~~~~~~~~~li~vd~~~-~~~~~~~~~i~~~~~~~~~~~~~v 83 (108)
T PF14581_consen 5 GEKVLLGEPEEEPTDLLAALSEYFKQHKNVRAAYLALMQDEDEQPSLLIGVDFDG-EDIEEIFQEIGRAARPYLPDGWPV 83 (108)
T ss_pred CCEEEecCCccCHHHHHHHHHHHHhhCccHHHhHHHHhhccCCCceEEEEEeccC-hhHHHHHHHHHHHhhhcCCCCceE
Confidence 44566664432222 467889999999987766554333 33333344556655 34444433332 2222 33555
Q ss_pred EEEecc
Q 025549 88 TVQFAK 93 (251)
Q Consensus 88 ~v~~a~ 93 (251)
.+-...
T Consensus 84 d~~~~~ 89 (108)
T PF14581_consen 84 DFVLLD 89 (108)
T ss_pred EEEEcc
Confidence 554443
No 256
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=44.01 E-value=1.2e+02 Score=21.75 Aligned_cols=46 Identities=26% Similarity=0.356 Sum_probs=21.5
Q ss_pred CCCHHHHHHHhh-cCCC---eeEE-EEccCCCCCCcceEEEEEEecHHHHHH
Q 025549 26 RTTADDLFPLFE-KYGK---VVDV-FIPRDRRTGDSRGFAFVRYKYADEAQK 72 (251)
Q Consensus 26 ~~t~~~L~~~f~-~~G~---i~~v-~i~~~~~~g~~~g~afV~f~~~~~A~~ 72 (251)
..+..+|++.+. .|+. .+.| .|......|...|||.| |++.+.|+.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 456677776664 4552 2222 22222223444555554 555555444
No 257
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=43.22 E-value=66 Score=22.46 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=34.2
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe--cHHHHHHHHhhhCCC
Q 025549 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK--YADEAQKAVDRLDGR 80 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~--~~~~A~~Ai~~l~g~ 80 (251)
.+|.-.||... -.|+.|+..++...+|.......++...+.+||-|. +.++.+..++.|+..
T Consensus 11 ~~~~v~~PE~p--Gal~~F~~~l~~~~nITeF~YR~~~~~~a~vlvgi~v~~~~~~~~l~~~L~~~ 74 (91)
T PF00585_consen 11 ALFAVEFPERP--GALKRFLDALGPRNNITEFHYRYSGDDFARVLVGIEVPDAEDLEELIERLKAL 74 (91)
T ss_dssp EEEEEE--BST--THCHHHHHCCSSSE-EEEEEEE-TTTSCSEEEEEEE-SSTHHHHHHHHHHTSS
T ss_pred EEEEEECCCCc--cHHHHHHHHhCCCceEEEEEEcCCCCCeeeEEEEEEeCCHHHHHHHHHHHHHc
Confidence 46666777643 356777777765443433333334556677887776 445556666666644
No 258
>PRK08577 hypothetical protein; Provisional
Probab=42.93 E-value=1.4e+02 Score=22.32 Aligned_cols=64 Identities=6% Similarity=0.013 Sum_probs=32.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEE--EEecH-HHHHHHHhhhCCC
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFV--RYKYA-DEAQKAVDRLDGR 80 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV--~f~~~-~~A~~Ai~~l~g~ 80 (251)
.+.|.|......-.-.+|..+|..++ .|..+........ ...++.+ +..+. .+...+++.|...
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~--~~~~i~l~vev~~~~~~l~~l~~~L~~l 123 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRG--ELAECVIIVDLSKSDIDLEELEEELKKL 123 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCC--CEEEEEEEEEeCCchhhHHHHHHHHHcC
Confidence 34444544444444567888888876 5555544332211 1123333 33443 4556666655543
No 259
>smart00457 MACPF membrane-attack complex / perforin.
Probab=42.93 E-value=25 Score=28.24 Aligned_cols=29 Identities=10% Similarity=0.264 Sum_probs=22.5
Q ss_pred EEecCCCCCCHHHHHHHhhcCCC--eeEEEE
Q 025549 19 LVLNITFRTTADDLFPLFEKYGK--VVDVFI 47 (251)
Q Consensus 19 ~V~nLp~~~t~~~L~~~f~~~G~--i~~v~i 47 (251)
-|.+||......++..||..||. |..+.+
T Consensus 29 ~l~~Lp~~~~~~~~~~fi~~yGTH~i~s~~~ 59 (194)
T smart00457 29 ALRDLPDQYNRGAYARFIDKYGTHYITSATL 59 (194)
T ss_pred HHHhCccccCHHHHHHHHHHhCCeEEEeeee
Confidence 34578888888999999999996 444444
No 260
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=42.20 E-value=1e+02 Score=24.79 Aligned_cols=75 Identities=8% Similarity=0.115 Sum_probs=38.3
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe-cHHHHH---HHHhhhCCCccCCceEEEEec
Q 025549 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK-YADEAQ---KAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~-~~~~A~---~Ai~~l~g~~i~g~~l~v~~a 92 (251)
.|.|.==|..++.++|.++|-..-..+.+.-.- +.....|.-+.|. +.++.+ ++|+.|+.....+.+|.+++.
T Consensus 61 ~V~V~yDp~~iSy~~LL~~Ff~~hDPt~~~~Qg---~D~G~QYRS~If~~~~eQ~~~a~~~~~~~~~~~~~~~~i~Tei~ 137 (186)
T PRK13014 61 AVQITYDPKQVSYENLLQIFFSTHDPTQLNRQG---PDRGEQYRSAIFYHDEEQKKVAEAYIAQLDEAGIFKKPIVTPIK 137 (186)
T ss_pred EEEEEECCCcCCHHHHHHHHHHhcCCCccCCCC---CCCCCCceEEEEeCCHHHHHHHHHHHHHHHhccccCCCcEEEEe
Confidence 466666677889999998885543222221110 0011234444443 554444 445555433233566777665
Q ss_pred cC
Q 025549 93 KY 94 (251)
Q Consensus 93 ~~ 94 (251)
..
T Consensus 138 p~ 139 (186)
T PRK13014 138 PY 139 (186)
T ss_pred cC
Confidence 43
No 261
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=41.87 E-value=27 Score=22.81 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=23.2
Q ss_pred CHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEE
Q 025549 28 TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFV 62 (251)
Q Consensus 28 t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV 62 (251)
-+.+|..+|-+.-+|.++.|...+.-++ |-|||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKri~~--G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKRIRK--GAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEeeeC--CceeE
Confidence 3566788888888999999887665444 44554
No 262
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=41.32 E-value=54 Score=27.33 Aligned_cols=64 Identities=16% Similarity=0.171 Sum_probs=43.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCC--CCCcceEEEEEEecHHHHHHHHhhhC
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRR--TGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~--~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
..+|.|.-||-.-.++-|..+|+..| .|.-..+..+.. ......|..|+.....-.+.|+.+|-
T Consensus 118 pL~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~S~y~~l~L~g~~rl~daL~HLY 184 (245)
T PF12623_consen 118 PLEVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGDSRYVDLTLTGTVRLADALNHLY 184 (245)
T ss_pred ceEEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCccCccccCCcceEEEEeeeEEHHHHHhhhh
Confidence 45788889998889999999999999 444334444432 22223577787776666677776543
No 263
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=41.30 E-value=69 Score=26.33 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=27.4
Q ss_pred cEEEEecCCCCCCHHH--------HHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecH
Q 025549 16 YSLLVLNITFRTTADD--------LFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYA 67 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~--------L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 67 (251)
+.=||-.||.+++.++ |+.+|..+|-+..+.|..+.. ..-.|.|.|.+.
T Consensus 68 are~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~aIH~d~~---~NpHaHim~t~R 124 (216)
T PF03389_consen 68 AREFEIALPRELTLEQNIELVREFAQENFVDYGMAADVAIHDDGP---RNPHAHIMFTTR 124 (216)
T ss_dssp EEEEEEE--TTS-HHHHHHHHHHHHHHHHTTTT--EEEEEEEETT---TEEEEEEEE--B
T ss_pred eeeeeeeCCccCCHHHHHHHHHHHHHHHhhccceEEEEEEecCCC---CCCEEEEEeecC
Confidence 4557889999988765 445566778888988875322 224677777654
No 264
>TIGR02223 ftsN cell division protein FtsN. FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by Pfam model pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis.
Probab=40.92 E-value=52 Score=28.61 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=47.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceE-EEE-EEecHHHHHHHHhhhCCCccCCceE
Q 025549 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGF-AFV-RYKYADEAQKAVDRLDGRVVDGREI 87 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~-afV-~f~~~~~A~~Ai~~l~g~~i~g~~l 87 (251)
..+.|.||-|......+.|..-|...|.-..|. .. +|. ..| .+| -|.+.++|..++..|.+.-|.+..|
T Consensus 226 ~~~~lQvGAF~~~~~Ae~l~akL~~~G~~~~i~--~~--~g~-~~yRV~vGPf~sr~~A~~~~~~Lk~~Gi~~~iv 296 (298)
T TIGR02223 226 RAAALQCGAYANKEQAESVRAKLAFLGISSKIT--TT--DGG-KWYRVVSGPYKNKDDAEKDLNKLKVAGVAGCII 296 (298)
T ss_pred ccEEEEEeecCCHHHHHHHHHHHHhcCCceEEE--ec--CCc-eEEEEEeCCCCCHHHHHHHHHHHHHcCCCCeEe
Confidence 348899999998888888999988888433333 11 221 122 222 4778899999999998877777665
No 265
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=40.82 E-value=70 Score=24.21 Aligned_cols=45 Identities=16% Similarity=0.398 Sum_probs=21.5
Q ss_pred CCCHHHHHHHhh-cCC----CeeEEE-EccCCCCCCcceEEEEEEecHHHHH
Q 025549 26 RTTADDLFPLFE-KYG----KVVDVF-IPRDRRTGDSRGFAFVRYKYADEAQ 71 (251)
Q Consensus 26 ~~t~~~L~~~f~-~~G----~i~~v~-i~~~~~~g~~~g~afV~f~~~~~A~ 71 (251)
..+..+|.+.+. .|+ +++.|. |......|...|||.| |++.+.|.
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 456778777775 455 122222 2222223445555554 55554443
No 266
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=40.50 E-value=31 Score=31.04 Aligned_cols=52 Identities=29% Similarity=0.279 Sum_probs=38.4
Q ss_pred cCCCCCCHHHHHHHhh----cCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHH
Q 025549 22 NITFRTTADDLFPLFE----KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAV 74 (251)
Q Consensus 22 nLp~~~t~~~L~~~f~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai 74 (251)
+|-.+-|--+|+++|- ..|.|+.|.|...+ ..+....||+-.++.+++++++
T Consensus 231 slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~-kpksvn~af~gi~sf~~v~k~f 286 (511)
T KOG1232|consen 231 SLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPP-KPKSVNVAFIGIESFDDVQKVF 286 (511)
T ss_pred hhcccCccccchhheecCCceeeEEeeEEEeecC-CCcceeEEEEccccHHHHHHHH
Confidence 4556667778999993 56788888887664 4455678999988888887753
No 267
>TIGR00279 L10e ribosomal protein L10.e. L10.e is distantly related to eubacterial ribosomal protein L16.
Probab=40.20 E-value=1.2e+02 Score=24.05 Aligned_cols=61 Identities=16% Similarity=0.107 Sum_probs=30.7
Q ss_pred CcEEEEecCCCC-CCHHHHHHHhh----------cCCCeeEEEEccCCCCCCcceEEEEEEe----cHHHHHHHHhhhCC
Q 025549 15 TYSLLVLNITFR-TTADDLFPLFE----------KYGKVVDVFIPRDRRTGDSRGFAFVRYK----YADEAQKAVDRLDG 79 (251)
Q Consensus 15 ~~~l~V~nLp~~-~t~~~L~~~f~----------~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~A~~Ai~~l~g 79 (251)
++.|+|.-+|.. +|+.-+..-.. .||.+........+ |..++++. +.+.|+.||.. -.
T Consensus 81 ~~k~wIRvfP~~~lt~kp~~trmGaDRlq~GMr~gkG~p~~wvArVk~------Gqiifei~~~~~~~~~AkeAlr~-A~ 153 (172)
T TIGR00279 81 GYHLKIRVYPHHILRENKMATGAGADRIQQGMRGAFGKPVGTAARVKI------GQKIFSVWTKPSNFDVAKEALRR-AA 153 (172)
T ss_pred ceEEEEEECCCCceecCchhhhcCchhhhcccccCCCCccEEEEEECc------CCEEEEEEeecCCHHHHHHHHHH-Hh
Confidence 456666666643 34443433333 46655443332222 33455553 55888888874 33
Q ss_pred Ccc
Q 025549 80 RVV 82 (251)
Q Consensus 80 ~~i 82 (251)
..|
T Consensus 154 ~KL 156 (172)
T TIGR00279 154 MKF 156 (172)
T ss_pred ccC
Confidence 444
No 268
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=40.19 E-value=1.7e+02 Score=22.79 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=43.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCC--CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYG--KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
....+|.||.|-..- -+|--+-....| .|..+.+......+.+...--|.+...+..++|+..|+.....-.-|.|
T Consensus 86 ~~~~vvLIGhiv~td-iqDTId~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~~e~l~ea~~~l~ev~~eK~Ll~I 163 (170)
T COG2061 86 EKTDVVLIGHIVHTD-IQDTIDRINSIGGAEVVDLSLSMPGIEGESSARITIIAVGKEKLDEALRRLKEVAMEKDLLLI 163 (170)
T ss_pred eeEeEEEEEeeecCc-HHHHHHHhhccCCEEEEEEEeecCCCCCCcceeEEEEEcChhHHHHHHHHHHHHHhhcCcEEE
Confidence 345567777765432 233333344444 7777776665445555444444555788888998887755443333333
No 269
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=40.18 E-value=43 Score=23.41 Aligned_cols=45 Identities=16% Similarity=0.111 Sum_probs=23.9
Q ss_pred EEEEecCCCCCCHHH---HHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec
Q 025549 17 SLLVLNITFRTTADD---LFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY 66 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~---L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 66 (251)
-|||+++...+-+.- |.+.+.+-|.+.-+ ..+ ....||+|-++-+
T Consensus 27 GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~--~~~---~~e~G~~~~t~G~ 74 (87)
T TIGR01873 27 GVYVGGVSASVRERIWDYLAQHCPPKGSLVIT--WSS---NTCPGFEFFTLGE 74 (87)
T ss_pred CcEEcCCCHHHHHHHHHHHHHhCCCCccEEEE--EeC---CCCCCcEEEecCC
Confidence 399999998765443 33332122333322 222 2234788877654
No 270
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=40.14 E-value=1e+02 Score=19.83 Aligned_cols=43 Identities=19% Similarity=0.370 Sum_probs=26.1
Q ss_pred HHHHHhhcCC-Cee----EEEEccCCCCCCcceEEEEEEecHHHHHHHHh
Q 025549 31 DLFPLFEKYG-KVV----DVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 31 ~L~~~f~~~G-~i~----~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 75 (251)
.+..++.+|| .|. ...++.. ........+|+|.+.+.|.+++.
T Consensus 10 ~~~~~l~~~GG~~l~~~~~~~~leG--~~~~~~~viieFPs~~aa~~~~~ 57 (65)
T PF07045_consen 10 AVPPILEKYGGRVLARGGEPEVLEG--DWDPDRVVIIEFPSMEAAKAWYN 57 (65)
T ss_dssp HHHHHHHHTT-EEEEECEEEEEEES--T-SSSEEEEEEESSHHHHHHHHC
T ss_pred HHHHHHHHcCCEEEEECCceeEEec--CCCCCeEEEEECCCHHHHHHHHC
Confidence 3556677776 322 1233332 22334679999999999888754
No 271
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=40.11 E-value=97 Score=19.66 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=28.9
Q ss_pred CHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhh
Q 025549 28 TADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (251)
Q Consensus 28 t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 76 (251)
.-.+|.++|.+.| .|..+.+.... . .++.-|.+.+.+.|.++|..
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHHH
Confidence 3467888888777 67777654431 1 35566666776677777663
No 272
>PRK12866 YciI-like protein; Reviewed
Probab=40.08 E-value=1.3e+02 Score=21.21 Aligned_cols=27 Identities=15% Similarity=0.051 Sum_probs=19.2
Q ss_pred eEEEEEEecHHHHHHHHhhhCCCccCCc
Q 025549 58 GFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (251)
Q Consensus 58 g~afV~f~~~~~A~~Ai~~l~g~~i~g~ 85 (251)
++..+++.+.++|++.|+ -+-....|-
T Consensus 50 ~~ii~~a~s~~e~~~~l~-~DPf~~~gl 76 (97)
T PRK12866 50 AVLVFEGDSPAAAEAFAR-ADPYVRNGL 76 (97)
T ss_pred EEEEEEeCCHHHHHHHHH-cCChhhcCC
Confidence 555568899999988887 355555555
No 273
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.79 E-value=1.1e+02 Score=20.34 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=29.8
Q ss_pred CHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEe-cHHHHHHHHhhhCC
Q 025549 28 TADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYK-YADEAQKAVDRLDG 79 (251)
Q Consensus 28 t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~-~~~~A~~Ai~~l~g 79 (251)
.-.+|...|..+| .+..|.--..+ .....-+-||+++ +.+..+.||+.|..
T Consensus 13 ~L~~iL~~f~~~~inl~~IeSRP~~-~~~~~y~F~id~e~~~~~i~~~l~~l~~ 65 (74)
T cd04929 13 GLAKALKLFQELGINVVHIESRKSK-RRSSEFEIFVDCECDQRRLDELVQLLKR 65 (74)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCC-CCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence 3567888888887 45555433322 1112224578877 44567777777654
No 274
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=39.45 E-value=46 Score=23.62 Aligned_cols=19 Identities=5% Similarity=0.137 Sum_probs=15.1
Q ss_pred cceEEEEEEecHHHHHHHH
Q 025549 56 SRGFAFVRYKYADEAQKAV 74 (251)
Q Consensus 56 ~~g~afV~f~~~~~A~~Ai 74 (251)
+.....|+|.+.+.|..|.
T Consensus 52 ptr~vviEFps~~~ar~~y 70 (96)
T COG5470 52 PTRNVVIEFPSLEAARDCY 70 (96)
T ss_pred cccEEEEEcCCHHHHHHHh
Confidence 3467999999999887764
No 275
>COG5584 Predicted small secreted protein [Function unknown]
Probab=39.39 E-value=56 Score=23.25 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=23.8
Q ss_pred cCCCCCCHHHHHHHhhcCCCeeEEEEccCC
Q 025549 22 NITFRTTADDLFPLFEKYGKVVDVFIPRDR 51 (251)
Q Consensus 22 nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~ 51 (251)
||..+..-.-|++.|.++|+|+.-+|...+
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~p 58 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEP 58 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEec
Confidence 566666777899999999999887776554
No 276
>PRK06545 prephenate dehydrogenase; Validated
Probab=39.26 E-value=1.7e+02 Score=25.97 Aligned_cols=65 Identities=17% Similarity=0.290 Sum_probs=45.8
Q ss_pred CCCcEEEEecCCCCC-CHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC
Q 025549 13 RDTYSLLVLNITFRT-TADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~-t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
..-+.||| .||... .-..|..++...| .|++|.|.... +...|..-|.|.+.++++.|...|...
T Consensus 288 ~~~~~~~v-~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~ 354 (359)
T PRK06545 288 PSFYDLYV-DVPDEPGVIARVTAILGEEGISIENLRILEAR--EDIHGVLQISFKNEEDRERAKALLEEF 354 (359)
T ss_pred CcceEEEE-eCCCCCCHHHHHHHHHHHcCCCeecceeeecc--CCcCceEEEEeCCHHHHHHHHHHHHhc
Confidence 34566776 445433 3466777777777 68888887653 345588899999999999998876543
No 277
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=39.20 E-value=29 Score=29.29 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHhh
Q 025549 15 TYSLLVLNITFRTTADDLFPLFE 37 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~ 37 (251)
...++|+|||+.++..-|..++.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHH
T ss_pred CceEEEEEecccchHHHHHHHhh
Confidence 55789999999999999998887
No 278
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=38.91 E-value=70 Score=26.12 Aligned_cols=54 Identities=22% Similarity=0.301 Sum_probs=32.7
Q ss_pred HHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCc
Q 025549 30 DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (251)
Q Consensus 30 ~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~ 85 (251)
.+|..++..|| |.++.+ .|..++...-+.|+.=.+.+.+..|++.|....+...
T Consensus 45 k~F~k~AkKyG-V~yav~-kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~~~~ 98 (204)
T PF12687_consen 45 KEFKKEAKKYG-VDYAVK-KDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKLKKE 98 (204)
T ss_pred HHHHHHHHHcC-CceEEe-eccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhhhhh
Confidence 44455557888 445543 4444444334455555688888899988877655433
No 279
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=38.84 E-value=76 Score=28.11 Aligned_cols=52 Identities=17% Similarity=0.085 Sum_probs=35.5
Q ss_pred CHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceE
Q 025549 28 TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (251)
Q Consensus 28 t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l 87 (251)
+.++|..+|..---+..+.-..+ .-||.|.+..+.++-|..+++..+.|.++
T Consensus 263 ~Y~~Le~HF~~~hy~ct~qtc~~--------~k~~vf~~~~el~~h~~~~h~~~~~~~~~ 314 (493)
T COG5236 263 SYEDLEAHFRNAHYCCTFQTCRV--------GKCYVFPYHTELLEHLTRFHKVNARLSEI 314 (493)
T ss_pred CHHHHHHHhhcCceEEEEEEEec--------CcEEEeccHHHHHHHHHHHhhcccccCcC
Confidence 45678888876554444433332 15888999988888888888887766554
No 280
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=38.57 E-value=35 Score=30.04 Aligned_cols=64 Identities=11% Similarity=0.113 Sum_probs=36.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcC---CC--eeEEEEccC-----CCCCCcceEEEEEEecHHHHHHHHhh
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKY---GK--VVDVFIPRD-----RRTGDSRGFAFVRYKYADEAQKAVDR 76 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~---G~--i~~v~i~~~-----~~~g~~~g~afV~f~~~~~A~~Ai~~ 76 (251)
.....+||.++-..+..+.|..+-+.. -. +.++..+.. ..-.....|++|.|.|+++|.+..+.
T Consensus 158 eka~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~af~~~ 231 (343)
T KOG2854|consen 158 EKAKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAAFARA 231 (343)
T ss_pred hheeEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHHHHHh
Confidence 345678888888777666555443322 21 112111100 00012235899999999999987763
No 281
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=38.56 E-value=61 Score=26.28 Aligned_cols=59 Identities=20% Similarity=0.244 Sum_probs=35.4
Q ss_pred CHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCC-CccC--CceEEEE
Q 025549 28 TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG-RVVD--GREITVQ 90 (251)
Q Consensus 28 t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~i~--g~~l~v~ 90 (251)
+.++..+++..++... +.|..+. ...|-+.+...+.++|..|+..|-. ..|. +..|.|+
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKadG---la~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIE 86 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKADG---LAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIE 86 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEESS---SCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEE
T ss_pred CHHHHHHHHHhcCCCc-eEEccCC---CCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEE
Confidence 5677888887776433 4444432 2223356666899999999887532 3332 4455554
No 282
>CHL00030 rpl23 ribosomal protein L23
Probab=37.95 E-value=89 Score=22.09 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=23.9
Q ss_pred EEEEecCCCCCCHHHHHHHhhc-CC-CeeEEEEcc
Q 025549 17 SLLVLNITFRTTADDLFPLFEK-YG-KVVDVFIPR 49 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~-~G-~i~~v~i~~ 49 (251)
..|+--++..++..+|+++|+. || .|..|..+.
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~ 54 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHR 54 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEE
Confidence 3566677889999999999986 55 456664443
No 283
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.92 E-value=1.1e+02 Score=19.51 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=32.3
Q ss_pred EEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEE----ecHHHHHHHHhhhCCC
Q 025549 18 LLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRY----KYADEAQKAVDRLDGR 80 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f----~~~~~A~~Ai~~l~g~ 80 (251)
|.|.-....-.-.+|..+|..+| .|..+...... .+ +++.+.| .+.+..+.+++.|...
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~-~~---~~~~~~i~~~~~~~~~l~~~i~~L~~~ 66 (79)
T cd04881 3 LRLTVKDKPGVLAKITGILAEHGISIESVIQKEAD-GG---ETAPVVIVTHETSEAALNAALAEIEAL 66 (79)
T ss_pred EEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccC-CC---CceeEEEEEccCCHHHHHHHHHHHHcC
Confidence 33433333335667888888887 56666543221 11 2333322 3667777777777754
No 284
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=37.67 E-value=58 Score=22.90 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=18.7
Q ss_pred ceEEEEEEecHHHHHHHHhhhCCC
Q 025549 57 RGFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 57 ~g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
.||.||++.-.+.+..+|..+.+.
T Consensus 59 pGYvFv~~~~~~~~~~~i~~~~~v 82 (106)
T smart00738 59 PGYIFVEADLEDEVWTAIRGTPGV 82 (106)
T ss_pred CCEEEEEEEeCCcHHHHHhcCCCc
Confidence 399999998767777777777664
No 285
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=37.28 E-value=60 Score=28.61 Aligned_cols=46 Identities=13% Similarity=0.165 Sum_probs=31.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEE
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRY 64 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f 64 (251)
+.+.||++|-.+..-++|..++.++| .+..|....+. ..++++|..
T Consensus 61 ~~~afiGkvGdD~fG~~l~~~L~~~~V~~~~v~~~~~~----~T~~a~i~v 107 (330)
T KOG2855|consen 61 GRVAFIGKVGDDEFGDDLLDILKQNGVDTSGVKFDENA----RTACATITV 107 (330)
T ss_pred cceeeeecccchhhHHHHHHHHhhCCcccccceecCCC----ceEEEEEEE
Confidence 57899999999999999999999987 33344443332 335555543
No 286
>PF05336 DUF718: Domain of unknown function (DUF718); InterPro: IPR008000 Mutarotases are enzymes which interconvert the alpha and beta stereoisomers of monosaccharides, enhancing the rate of their metabolism. Proteins in this entry are homologues of the rhamnose mutarotase YiiL (P32156 from SWISSPROT) from Escherichia coli, and are often encoded in rhamnose utilisation operons. YiiL is an enzyme which interconverts the alpha and beta stereoisomers of the pyranose form of L-rhamnose []. It is not required for growth on rhamnose, but allows cells to utilise this carbon source more efficiently [].The structure of YiiL is distinct from other mutarotases, forming an asymmetric dimmer stabilised by an intermolecular beta-sheet, hydrophobic interactions and a salt bridge [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0019299 rhamnose metabolic process, 0005737 cytoplasm; PDB: 2QLX_A 2QLW_B 1X8D_B.
Probab=37.26 E-value=96 Score=22.31 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=27.1
Q ss_pred HHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHh
Q 025549 29 ADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 29 ~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 75 (251)
+.+|.+.+...| |.+..|.....+ +.-|+++++.+.+.+.+++.
T Consensus 25 WPEv~~~l~~~G-i~~ysIf~~g~~--~~LF~~~E~~~~~~~~~~l~ 68 (106)
T PF05336_consen 25 WPEVLAALREAG-IRNYSIFRDGDT--GRLFMYMETDDFDADMAALA 68 (106)
T ss_dssp -HHHHHHHHHCT-EEEEEEEEETTT--TEEEEEEEECT-CHHHHHGG
T ss_pred CHHHHHHHHHCC-CeEEEEEEeCCC--CEEEEEEEecChhhHHHHcc
Confidence 567888888887 666666665322 34688888888444444443
No 287
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.26 E-value=46 Score=28.27 Aligned_cols=58 Identities=10% Similarity=0.025 Sum_probs=35.5
Q ss_pred CcEEEEecCCCC-----CCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe---cHHHHHHHHhhhC
Q 025549 15 TYSLLVLNITFR-----TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK---YADEAQKAVDRLD 78 (251)
Q Consensus 15 ~~~l~V~nLp~~-----~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~---~~~~A~~Ai~~l~ 78 (251)
+.+|.|.|++.. .+.++|..++..++....+.++.|. +.+|+.-. +.+....+++.|.
T Consensus 137 ~v~l~lEN~~~~~~~l~~~~~el~~ll~~~~~~~~lg~~lDt------~H~~~~g~~~~~~~~~~~~~~~~~ 202 (274)
T TIGR00587 137 IVTILLENMAGQGSELGRSFEELAYIIKVIVDKRRIGVCLDT------CHFFAAGYDITTKAYFEVVKNEFD 202 (274)
T ss_pred CCEEEEEeCCCCCCccCCCHHHHHHHHHhcCCCCceEEEEEh------hhHHhcCCCcCCHHHHHHHHHHHH
Confidence 467999999732 4889999999988754445555542 33343322 3455565655444
No 288
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=37.23 E-value=52 Score=22.79 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=20.3
Q ss_pred CeeEEEEccCCCCCCcceEEEEEEec
Q 025549 41 KVVDVFIPRDRRTGDSRGFAFVRYKY 66 (251)
Q Consensus 41 ~i~~v~i~~~~~~g~~~g~afV~f~~ 66 (251)
+|++|.|..-...+..++||=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 46777777666668899999999987
No 289
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=37.18 E-value=94 Score=18.66 Aligned_cols=49 Identities=8% Similarity=0.106 Sum_probs=26.9
Q ss_pred CHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEE--ecHHHHHHHHhhhCC
Q 025549 28 TADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRY--KYADEAQKAVDRLDG 79 (251)
Q Consensus 28 t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f--~~~~~A~~Ai~~l~g 79 (251)
...+|.++|..++ .|..+.+.... + ......+++ .+..+....++.|..
T Consensus 11 ~l~~i~~~l~~~~~~i~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~l~~ 62 (71)
T cd04876 11 LLADITTVIAEEKINILSVNTRTDD--D-GLATIRLTLEVRDLEHLARIMRKLRQ 62 (71)
T ss_pred HHHHHHHHHHhCCCCEEEEEeEECC--C-CEEEEEEEEEECCHHHHHHHHHHHhC
Confidence 4567888998886 56666554321 1 112223333 456666666666654
No 290
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=37.09 E-value=83 Score=24.70 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=23.2
Q ss_pred ecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 65 KYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 65 ~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
.+.++...|++.++.....|+.+.|...
T Consensus 90 Ps~~~i~~aVeFi~k~asLGktvYVHCK 117 (183)
T KOG1719|consen 90 PSLENIQKAVEFIHKNASLGKTVYVHCK 117 (183)
T ss_pred CCHHHHHHHHHHHHhccccCCeEEEEec
Confidence 4778889999988888889998888654
No 291
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=36.60 E-value=1.4e+02 Score=20.45 Aligned_cols=56 Identities=7% Similarity=0.003 Sum_probs=35.3
Q ss_pred EEEecCCCCCCHHHHHHHhhc-CCCe--eEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025549 18 LLVLNITFRTTADDLFPLFEK-YGKV--VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~-~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
+..-.||+.++.++|.+.+.. |+.. ..+.|..--..| -+|...+..+.+.|+..+.
T Consensus 11 ~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddeg-----d~v~ltsd~DL~eai~i~~ 69 (82)
T cd06407 11 KIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDE-----EWVLLTCDADLEECIDVYR 69 (82)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCC-----CeEEeecHHHHHHHHHHHH
Confidence 555678888899888877753 4321 233333221222 5788888888888888543
No 292
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=36.55 E-value=1e+02 Score=27.04 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=23.2
Q ss_pred cEEEEec--CCCCCCHHHHHHHhhc-CCCeeEEEEc
Q 025549 16 YSLLVLN--ITFRTTADDLFPLFEK-YGKVVDVFIP 48 (251)
Q Consensus 16 ~~l~V~n--Lp~~~t~~~L~~~f~~-~G~i~~v~i~ 48 (251)
.||||.- |...++.++|.++|.. |+.-.+|.|.
T Consensus 210 ~Ti~~~~~~~~~~~~~~~i~~~~~~~Y~~epfV~v~ 245 (313)
T PRK11863 210 VTVPLHLRLLPGGPTAEDLHAALADHYAGEAFVRVA 245 (313)
T ss_pred EEEEEEecccCCCCCHHHHHHHHHHHcCCCCeEEEe
Confidence 4677765 5778899999999974 5554555554
No 293
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=36.52 E-value=94 Score=22.77 Aligned_cols=17 Identities=12% Similarity=-0.003 Sum_probs=11.9
Q ss_pred EEEEecCCCCCCHHHHH
Q 025549 17 SLLVLNITFRTTADDLF 33 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~ 33 (251)
-||||++|.....+.|.
T Consensus 8 ~l~~g~~~~~~d~~~L~ 24 (139)
T cd00127 8 GLYLGSYPAASDKELLK 24 (139)
T ss_pred CeEECChhHhcCHHHHH
Confidence 49999999766544443
No 294
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=36.35 E-value=1.2e+02 Score=19.46 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=36.1
Q ss_pred CHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhh
Q 025549 28 TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (251)
Q Consensus 28 t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 76 (251)
..+++.+++..+-+|.+|..+. |..--++.|.+.+.++.+..+..
T Consensus 11 ~~~~~~~~l~~~p~V~~~~~vt----G~~d~~~~v~~~d~~~l~~~i~~ 55 (74)
T PF01037_consen 11 AYDEFAEALAEIPEVVECYSVT----GEYDLILKVRARDMEELEEFIRE 55 (74)
T ss_dssp HHHHHHHHHHTSTTEEEEEEES----SSSSEEEEEEESSHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCEEEEEEEe----CCCCEEEEEEECCHHHHHHHHHH
Confidence 4678889999999999998864 44446788999999999998554
No 295
>PRK00907 hypothetical protein; Provisional
Probab=36.20 E-value=1.5e+02 Score=20.83 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=41.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCe---eEEEEccCCCCCCcce-EEEEEEecHHHHHHHHhhhCCC
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKV---VDVFIPRDRRTGDSRG-FAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i---~~v~i~~~~~~g~~~g-~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
.+.|.|-|....--.+.|.+++..+++- ..+.+... .+|+-.. .+.|...+.++.++..+.|...
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~S-s~GkY~Svtv~i~ats~eQld~iY~~L~~~ 85 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHS-SSGKYVSVRIGFRAESREQYDAAHQALRDH 85 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccC-CCCEEEEEEEEEEECCHHHHHHHHHHHhhC
Confidence 4778888888777788888888877642 33333322 2343323 3566777888877777776654
No 296
>PRK12450 foldase protein PrsA; Reviewed
Probab=35.72 E-value=70 Score=27.85 Aligned_cols=39 Identities=10% Similarity=0.320 Sum_probs=29.8
Q ss_pred CCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025549 26 RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 26 ~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
.+|+++|+.+|..|.+ .+. ..+|.|.+.+.|+.++..|.
T Consensus 132 ~Vtd~evk~~y~~~~~--~~~------------~~~I~~~~~~~A~~i~~~l~ 170 (309)
T PRK12450 132 TISKKDYRQAYDAYTP--TMT------------AEIMQFEKEEDAKAALEAVK 170 (309)
T ss_pred CCCHHHHHHHHHHhCc--cce------------eEEEEeCCHHHHHHHHHHHH
Confidence 4799999999998732 111 24678899999999999885
No 297
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=34.65 E-value=59 Score=23.07 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=19.7
Q ss_pred CeeEEEEccCCCCCCcceEEEEEEec
Q 025549 41 KVVDVFIPRDRRTGDSRGFAFVRYKY 66 (251)
Q Consensus 41 ~i~~v~i~~~~~~g~~~g~afV~f~~ 66 (251)
+|+.|.|..-...|+.++||-|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 46777766655568889999999987
No 298
>PF12007 DUF3501: Protein of unknown function (DUF3501); InterPro: IPR021890 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are about 200 amino acids in length. The structure of protein of unknown function (YP_111841.1) from B. pseudomallei has been solved. ; PDB: 3FJV_B.
Probab=34.62 E-value=45 Score=26.96 Aligned_cols=46 Identities=15% Similarity=0.321 Sum_probs=30.3
Q ss_pred CHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC
Q 025549 28 TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 28 t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
.+++|.+.+..|.++. +..+..+..-||+|.+.++...++..|.|.
T Consensus 65 ~~~~I~~Ei~aYnpLi-------P~~~~l~ATl~IE~~d~~~r~~~L~~L~Gi 110 (192)
T PF12007_consen 65 DEEGIQEEIDAYNPLI-------PDGGNLKATLMIEIPDEDERRRELARLVGI 110 (192)
T ss_dssp SHHHHHHHHHHHGGGS---------SSEEEEEEEE--SSHHHHHHHHHHCTTG
T ss_pred CHHHHHHHHHHhcccC-------CCCCcEEEEEEEEcCCHHHHHHHHHHhcCc
Confidence 3445555555565432 224455677899999999999999999887
No 299
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=34.39 E-value=55 Score=25.34 Aligned_cols=61 Identities=13% Similarity=0.197 Sum_probs=35.4
Q ss_pred CcEEEEecCC-CCCCHHHHHHHhhcC-CC-eeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCC
Q 025549 15 TYSLLVLNIT-FRTTADDLFPLFEKY-GK-VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (251)
Q Consensus 15 ~~~l~V~nLp-~~~t~~~L~~~f~~~-G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (251)
.+.+|+|+|. ...+-++|+..+... +. +..+.+...+ .-.-++|+|.-+.+|..-|..|-.
T Consensus 4 ifla~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~~~~----~~~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 4 IFLAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVRKVE----PWNSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred EEEEEECChhhhHHHHHHHHHHHHHHHhcccccceeeccc----cCceEEEEEechHHHHHHHHHHhh
Confidence 4677888988 223345555555433 22 2223332221 125699999999888877766543
No 300
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=34.38 E-value=50 Score=28.08 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=18.9
Q ss_pred EEEEecCCCCCCHHHHHHHhhc
Q 025549 17 SLLVLNITFRTTADDLFPLFEK 38 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~ 38 (251)
.++|+|||+.++..-|..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5789999999998888888754
No 301
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.21 E-value=1.2e+02 Score=29.09 Aligned_cols=62 Identities=13% Similarity=0.280 Sum_probs=35.5
Q ss_pred CHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe--cHHHHHHHHhhhC--CC-----cc-CCceEEEEeccCCCc
Q 025549 28 TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK--YADEAQKAVDRLD--GR-----VV-DGREITVQFAKYGPN 97 (251)
Q Consensus 28 t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~--~~~~A~~Ai~~l~--g~-----~i-~g~~l~v~~a~~~~~ 97 (251)
-.++|.+.|..-+.|..|.+... +||.|. ...-++..++.+. +. .+ .|++|.|+|.-+.+.
T Consensus 59 iA~~i~~~l~~~~~~~~veiaGp---------gfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNpt 129 (577)
T COG0018 59 IAEEIAEKLDTDEIIEKVEIAGP---------GFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPT 129 (577)
T ss_pred HHHHHHHhccccCcEeEEEEcCC---------CEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCC
Confidence 44566666666666777877532 455554 3333333333333 12 22 578999999877664
Q ss_pred h
Q 025549 98 A 98 (251)
Q Consensus 98 ~ 98 (251)
.
T Consensus 130 k 130 (577)
T COG0018 130 G 130 (577)
T ss_pred C
Confidence 3
No 302
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=33.91 E-value=1.4e+02 Score=19.74 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=30.9
Q ss_pred CHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEec---HHHHHHHHhhhCC
Q 025549 28 TADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKY---ADEAQKAVDRLDG 79 (251)
Q Consensus 28 t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~---~~~A~~Ai~~l~g 79 (251)
.-.+|.++|.++| .|..+...... .+...-..||+++. .++.+++++.|..
T Consensus 14 ~L~~il~~f~~~~ini~~i~s~p~~-~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 14 ALYDVLGVFAERGINLTKIESRPSK-GGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHHCCcCEEEEEEEEcC-CCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3567888898887 56666544432 22222345667773 5666777776664
No 303
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=33.90 E-value=92 Score=17.54 Aligned_cols=48 Identities=8% Similarity=0.166 Sum_probs=27.2
Q ss_pred CHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhh
Q 025549 28 TADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (251)
Q Consensus 28 t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (251)
...+|..+|..+| .|..+....... ......+|.+....+.+.+++.|
T Consensus 11 ~l~~i~~~l~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l 59 (60)
T cd02116 11 LLAKVLSVLAEAGINITSIEQRTSGD--GGEADIFIVVDGDGDLEKLLEAL 59 (60)
T ss_pred hHHHHHHHHHHCCCcEEEEEeEEcCC--CCeEEEEEEEechHHHHHHHHHh
Confidence 4567778887776 566665433211 22244556666655666666654
No 304
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=33.77 E-value=48 Score=32.21 Aligned_cols=12 Identities=25% Similarity=0.385 Sum_probs=6.5
Q ss_pred EEEEEecHHHHH
Q 025549 60 AFVRYKYADEAQ 71 (251)
Q Consensus 60 afV~f~~~~~A~ 71 (251)
+||.|.+...++
T Consensus 695 ~~~k~~de~~~~ 706 (877)
T KOG0151|consen 695 NPVKYDDEDRDK 706 (877)
T ss_pred cccccchhhhHH
Confidence 566665544443
No 305
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=33.70 E-value=33 Score=22.31 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=11.2
Q ss_pred CHHHHHHHhhcCCCeeEE
Q 025549 28 TADDLFPLFEKYGKVVDV 45 (251)
Q Consensus 28 t~~~L~~~f~~~G~i~~v 45 (251)
|--||.+++.+||.+..+
T Consensus 3 tlyDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 3 TLYDVQQLLKKFGIIIYV 20 (62)
T ss_dssp SHHHHHHHHHTTS-----
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 456899999999976554
No 306
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=33.44 E-value=48 Score=28.71 Aligned_cols=23 Identities=17% Similarity=0.491 Sum_probs=19.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhc
Q 025549 16 YSLLVLNITFRTTADDLFPLFEK 38 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~ 38 (251)
+.+.|.|||+.++...|..++..
T Consensus 102 ~d~VvaNlPY~Istpil~~ll~~ 124 (294)
T PTZ00338 102 FDVCVANVPYQISSPLVFKLLAH 124 (294)
T ss_pred cCEEEecCCcccCcHHHHHHHhc
Confidence 35789999999999999888864
No 307
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=33.39 E-value=57 Score=29.03 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=32.7
Q ss_pred CCcEEEEecCC----CCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHh
Q 025549 14 DTYSLLVLNIT----FRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 14 ~~~~l~V~nLp----~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 75 (251)
....|||.|=. ..++.++|..++..... ..+ |+.|. ||++|.. +++...+.
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~-~~~-vVvDE--------AY~eF~~-~~~~~l~~ 199 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPE-GGL-VVIDE--------AYIEFSP-ESSLELLK 199 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcE-EEEeC--------chhhcCC-chhhhhcc
Confidence 35678888643 34678999999988765 223 33332 9999998 44444433
No 308
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=33.13 E-value=53 Score=27.45 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.4
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCC
Q 025549 17 SLLVLNITFRTTADDLFPLFEKYG 40 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G 40 (251)
.+.|+|||+.++...|..++..+|
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPK 119 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCC
Confidence 488999999999999999997544
No 309
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=33.07 E-value=66 Score=24.98 Aligned_cols=60 Identities=13% Similarity=0.056 Sum_probs=38.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHH
Q 025549 14 DTYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKA 73 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 73 (251)
-..+||+|.-+..--+.--..+|+.|- +|..|.+..............|.+.+..+.+.+
T Consensus 86 ~~l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l~~~e~~ 146 (153)
T PF14401_consen 86 FELSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSELSEEEQD 146 (153)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhCCHHHHH
Confidence 355788887766555566677888885 678888776643344455566666555444443
No 310
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=32.10 E-value=1.3e+02 Score=23.99 Aligned_cols=73 Identities=8% Similarity=0.003 Sum_probs=41.7
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceE-EEEEEecHHHHHHHHhhhCCCcc-CCceEEEEe
Q 025549 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGF-AFVRYKYADEAQKAVDRLDGRVV-DGREITVQF 91 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~i-~g~~l~v~~ 91 (251)
-+|.|.-=|..++.++|.+||-..-..+.+.-.- +.-|. .| .-|-|.+.++++.|.+.|..... .+.+|..++
T Consensus 76 EvvrV~ydpk~~sy~~Lld~Fw~~HdPtt~n~QG-~D~Gt--QYRS~I~~~s~eq~k~A~~s~e~~Q~k~~~kI~T~I 150 (191)
T KOG1635|consen 76 EVVRVQYDPKVISYEELLDFFWSRHDPTTLNRQG-NDVGT--QYRSGIYTYSPEQEKLARESKEREQKKWNGKIVTEI 150 (191)
T ss_pred eEEEEEeCcccccHHHHHHHHHHcCCchhhhccC-Ccccc--eeeeeeeeCCHHHHHHHHHHHHHHHhccCCcceEEE
Confidence 3577777788999999999997654443332111 11111 22 23456677777777766654432 244444433
No 311
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=31.97 E-value=81 Score=23.08 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=8.6
Q ss_pred CCCCCCHHHHHHHhhc
Q 025549 23 ITFRTTADDLFPLFEK 38 (251)
Q Consensus 23 Lp~~~t~~~L~~~f~~ 38 (251)
+|.+++-.++..++.+
T Consensus 47 Vp~~~tv~~f~~~irk 62 (112)
T cd01611 47 VPSDLTVGQFVYIIRK 62 (112)
T ss_pred ecCCCCHHHHHHHHHH
Confidence 4555555555555543
No 312
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=31.97 E-value=1.3e+02 Score=21.24 Aligned_cols=53 Identities=17% Similarity=0.148 Sum_probs=32.9
Q ss_pred CCCCCCHHHHHHHhhcCCCe-eEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCC
Q 025549 23 ITFRTTADDLFPLFEKYGKV-VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (251)
Q Consensus 23 Lp~~~t~~~L~~~f~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (251)
+-+.++...|...|...|.- .-..+-.| .=+.+|.|+|.+.+.+..|.+.|-.
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD----~W~pm~vv~f~~~~~g~~~yq~Lre 73 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRKD----YWRPMCVVNFPNYEVGVSAYQKLRE 73 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhccc----cceEeEEEECCChHHHHHHHHHHHH
Confidence 45567777777777665521 11111111 1135799999999999999887643
No 313
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=31.79 E-value=2.4e+02 Score=26.72 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=27.3
Q ss_pred ceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccCC
Q 025549 57 RGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (251)
Q Consensus 57 ~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 95 (251)
.|-| +.|+++++|.+||. ++..-.|..|+|.|.-++
T Consensus 383 ~G~A-~VF~see~a~~ai~--~g~i~~gdVvViRyeGPk 418 (535)
T TIGR00110 383 EGPA-KVFESEEEALEAIL--GGKIKEGDVVVIRYEGPK 418 (535)
T ss_pred EEeE-EEECCHHHHHHHHh--cCCCCCCeEEEEeCCCCC
Confidence 3545 46999999999987 455567888999887554
No 314
>COG3266 DamX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.29 E-value=1.6e+02 Score=25.17 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=36.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEE--EEEEecHHHHHHHHhhhCC
Q 025549 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFA--FVRYKYADEAQKAVDRLDG 79 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~a--fV~f~~~~~A~~Ai~~l~g 79 (251)
-.++|.|.... .++.|..|..+.+- ..+.+.....+|+. .|. |-.|.+.++|.+|+..|--
T Consensus 210 ~~yTLQl~a~~---s~~nv~~fa~k~~l-~~~~vy~t~rnG~p-WYvv~~G~YatrqeA~~AvstLPa 272 (292)
T COG3266 210 SHYTLQLSASG---SYDNVNGFAKKQNL-KGYVVYETTRNGKP-WYVVVYGNYATRQEAKAAVSTLPA 272 (292)
T ss_pred CceEEEEeccc---chHHHHHHHHhcCC-CceEEeEeecCCce-eEEEEecCcccHHHHHHHHhhCcH
Confidence 36788876654 45667666665542 22333332223332 443 3468899999999998753
No 315
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=31.29 E-value=65 Score=25.63 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=25.7
Q ss_pred CCcEEEEecCCC--CC-CHHHHHHHhhcCCCeeEEEEcc
Q 025549 14 DTYSLLVLNITF--RT-TADDLFPLFEKYGKVVDVFIPR 49 (251)
Q Consensus 14 ~~~~l~V~nLp~--~~-t~~~L~~~f~~~G~i~~v~i~~ 49 (251)
.-..+||-+.+. +. ..+.|.+...+||.|..+.+..
T Consensus 20 ~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D 58 (195)
T PF01762_consen 20 RVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVD 58 (195)
T ss_pred cEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeeccc
Confidence 345788888887 32 2344788889999998887754
No 316
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=31.16 E-value=62 Score=23.36 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=24.8
Q ss_pred cCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 38 KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 38 ~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
+-|.|.+|.....+ .|+|+.|++--. + ...+.|..++|.+.
T Consensus 28 ~NGtv~qI~~Y~~p------NYvf~~FEnG~t-------v-sv~~~gs~~kI~~~ 68 (121)
T PF06919_consen 28 KNGTVAQIEQYMTP------NYVFMRFENGIT-------V-SVTYNGSIFKIGLD 68 (121)
T ss_pred CCCcEEEEeeecCC------CEEEEEecCCCE-------E-EEEecCcEEEEEec
Confidence 45777777666554 789999985311 0 12345666666654
No 317
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=30.92 E-value=73 Score=28.71 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=20.5
Q ss_pred CCCCCCHHHHHHHhhc-CCCeeEEEEc
Q 025549 23 ITFRTTADDLFPLFEK-YGKVVDVFIP 48 (251)
Q Consensus 23 Lp~~~t~~~L~~~f~~-~G~i~~v~i~ 48 (251)
|...++.++|.++|.. |..+..|.+.
T Consensus 285 ~~~~~~~~~v~~~~~~~y~~~~fV~~~ 311 (381)
T PLN02968 285 YAPGVTAEDLHQHLKERYEGEEFVKVL 311 (381)
T ss_pred eCCCCCHHHHHHHHHHhCCCCCEEEeC
Confidence 4567899999999988 6777777764
No 318
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=30.90 E-value=1e+02 Score=20.20 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=24.0
Q ss_pred ecCCCCCCHHHHHHHhhc--CCCeeEEEEccCCCCCCcceEE-EEEEecH
Q 025549 21 LNITFRTTADDLFPLFEK--YGKVVDVFIPRDRRTGDSRGFA-FVRYKYA 67 (251)
Q Consensus 21 ~nLp~~~t~~~L~~~f~~--~G~i~~v~i~~~~~~g~~~g~a-fV~f~~~ 67 (251)
.-|-..+. ++|.+.+.+ .|.|....|.... |++ +|+|.+.
T Consensus 10 ~~irDRi~-~~l~~~l~~~~~g~I~~fKmtDG~------giG~vv~~~ng 52 (64)
T PF11061_consen 10 SRIRDRIP-KELVDKLGKNPIGTIKGFKMTDGS------GIGVVVEFSNG 52 (64)
T ss_pred hhhhhhcc-HHHHHHhccCCcEEEEEEEEecCC------cEEEEEEecCC
Confidence 33434444 445566666 8899998886543 444 5677653
No 319
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=30.88 E-value=1.5e+02 Score=19.12 Aligned_cols=52 Identities=15% Similarity=0.129 Sum_probs=29.3
Q ss_pred HHHHHhhcCCCeeEEEEccCCC-CCCcceEEEEEEecHHHHHHHHhh-hCCCccC
Q 025549 31 DLFPLFEKYGKVVDVFIPRDRR-TGDSRGFAFVRYKYADEAQKAVDR-LDGRVVD 83 (251)
Q Consensus 31 ~L~~~f~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~Ai~~-l~g~~i~ 83 (251)
+|+.++.++..|.++.++.... .....-+|||.. +.++..+.+.. |...++-
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~-~~~~i~~~~~~~l~~~~~P 54 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL-DEEEIRDHLRDKLPPYMVP 54 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE-HHHHHHHHHHHHS-GGGS-
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe-eecccccchhhhCCCccee
Confidence 5788888898888876654321 222456788888 33444444332 4444443
No 320
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=30.79 E-value=75 Score=24.61 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=19.1
Q ss_pred cEEEEecCCCCCCHHHHHHHhhc
Q 025549 16 YSLLVLNITFRTTADDLFPLFEK 38 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~ 38 (251)
+.+.|+|+|+.++.+.|..++..
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~ 100 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEE 100 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhc
Confidence 56789999999988888888764
No 321
>COG1839 Uncharacterized conserved protein [Function unknown]
Probab=30.67 E-value=2.5e+02 Score=21.61 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=22.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcC
Q 025549 12 IRDTYSLLVLNITFRTTADDLFPLFEKY 39 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~ 39 (251)
..++..|.||.-++-.|-+||.+.+-..
T Consensus 12 ~Pe~~nvIiGqshFIkTVeDL~ealvt~ 39 (162)
T COG1839 12 IPEGVNVIIGQSHFIKTVEDLYEALVTA 39 (162)
T ss_pred CcCCceEEEeechhheeHHHHHHHHHhc
Confidence 3456789999999988999999888543
No 322
>COG4471 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.66 E-value=1.2e+02 Score=21.28 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=28.0
Q ss_pred HHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCc
Q 025549 34 PLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV 81 (251)
Q Consensus 34 ~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (251)
..+..||.|..+.-.. . -.|.|.+.++.+..++.|....
T Consensus 20 RqLrkfG~v~Y~Skk~--------k-Y~vlYvn~~~ve~~~~kl~~~k 58 (90)
T COG4471 20 RQLRKFGDVHYVSKKS--------K-YVVLYVNEQDVEQIVEKLSRLK 58 (90)
T ss_pred HHHHhcCCEEEEecce--------e-EEEEEECHHHHHHHHHHHhhce
Confidence 3467899998774322 1 4567889999999998887654
No 323
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=30.56 E-value=50 Score=28.80 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=28.6
Q ss_pred CCCcEEEEecCCCCC----CHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEe-cHHHHHHHHhhh
Q 025549 13 RDTYSLLVLNITFRT----TADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYK-YADEAQKAVDRL 77 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~----t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~-~~~~A~~Ai~~l 77 (251)
.+...|||++|...+ --.+|.+.+...| .|..+.+--.. .||++-..+ +.++..+||+.|
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy-----~G~G~~SL~~D~~eI~~~v~yl 97 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSY-----SGWGTSSLDRDVEEIAQLVEYL 97 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGB-----TTS-S--HHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCcc-----CCcCcchhhhHHHHHHHHHHHH
Confidence 457799999998643 2467777776544 34455443321 255554444 455555565544
No 324
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.40 E-value=1.4e+02 Score=18.43 Aligned_cols=46 Identities=7% Similarity=0.283 Sum_probs=25.3
Q ss_pred HHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhh
Q 025549 29 ADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (251)
Q Consensus 29 ~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 76 (251)
-.+|.++|.++| .|..+....... ......+|..++.+.+.++++.
T Consensus 13 L~~i~~~l~~~~~nI~~i~~~~~~~--~~~~~v~~~ve~~~~~~~~L~~ 59 (65)
T cd04882 13 LHEILQILSEEGINIEYMYAFVEKK--GGKALLIFRTEDIEKAIEVLQE 59 (65)
T ss_pred HHHHHHHHHHCCCChhheEEEccCC--CCeEEEEEEeCCHHHHHHHHHH
Confidence 356777787776 566665433211 1223445555676666666653
No 325
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=30.31 E-value=23 Score=29.90 Aligned_cols=75 Identities=20% Similarity=0.258 Sum_probs=48.7
Q ss_pred CcEEEEecCCCCCCHHH-H--HHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025549 15 TYSLLVLNITFRTTADD-L--FPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~-L--~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
-+.++++|+-..+..+- | ...|..|-.+....++.+. .+...+++|+.|........+...-++..+.-..|.+.
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a 173 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLA 173 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeec
Confidence 34566666655554443 2 5566666655555555543 45667899999998888888877767777666655443
No 326
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=30.27 E-value=1.8e+02 Score=20.81 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=15.7
Q ss_pred HHHhhhCCCccCCceEEEEeccC
Q 025549 72 KAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 72 ~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
..++.|+...-.|..|.|.|--.
T Consensus 64 ~i~~~Le~~~~~g~~V~v~Wyyd 86 (99)
T PF09345_consen 64 DIFDLLEDAAQKGGKVTVNWYYD 86 (99)
T ss_pred HHHHHHHHHHhcCCcEEEEEEEC
Confidence 34444555556889999999764
No 327
>KOG4357 consensus Uncharacterized conserved protein (involved in mesoderm differentiation in humans) [General function prediction only]
Probab=30.06 E-value=2.4e+02 Score=21.15 Aligned_cols=25 Identities=28% Similarity=0.193 Sum_probs=20.4
Q ss_pred EEEEEEecHHHHHHHHhhhCCCccC
Q 025549 59 FAFVRYKYADEAQKAVDRLDGRVVD 83 (251)
Q Consensus 59 ~afV~f~~~~~A~~Ai~~l~g~~i~ 83 (251)
-|+..|.+-+.|-.|...|-|..++
T Consensus 115 raifm~kdge~a~e~k~fll~qd~~ 139 (164)
T KOG4357|consen 115 RAIFMFKDGEQAFEAKDFLLGQDFC 139 (164)
T ss_pred eEEEEEeChhHHHHHHHHhhccchh
Confidence 3888999999999998887777554
No 328
>PF09180 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR016061 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Prolyl tRNA synthetase (6.1.1.15 from EC) exists in two forms, which are loosely related. The first form is present in the majority of eubacteria species. The second one, present in some eubacteria, is essentially present in archaea and eukaryota. Prolyl-tRNA synthetase belongs to class IIa. This domain is found at the C-terminal in archaeal and eukaryotic enzymes, as well as in certain bacterial ones.; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ6_A 1NJ2_A 1NJ5_A 1NJ1_A 1H4T_C 1H4S_A 1HC7_C 1H4Q_B 3IAL_B.
Probab=29.79 E-value=47 Score=21.86 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=19.5
Q ss_pred eEEEEEEecHHHHHHHHhhhCCCccCCc
Q 025549 58 GFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (251)
Q Consensus 58 g~afV~f~~~~~A~~Ai~~l~g~~i~g~ 85 (251)
||+.|-|...++++..|+.+-+..+.+-
T Consensus 12 g~v~~pwcg~~ece~~ike~t~at~rci 39 (68)
T PF09180_consen 12 GFVLVPWCGDEECEEKIKEETGATIRCI 39 (68)
T ss_dssp SEEEEEES-SHHHHHHHHHHHS-EEEEE
T ss_pred CEEEEEccCCHHHHHHHHHhcCCcEeEe
Confidence 6788888888889999887766554433
No 329
>KOG4806 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.76 E-value=82 Score=28.06 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=22.3
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCCCHHHHHHHhhcC
Q 025549 4 FGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKY 39 (251)
Q Consensus 4 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~ 39 (251)
..+-|.++....+.||+.|||. .+++...|..|
T Consensus 347 IaW~gs~d~~~kyCIy~~~~~~---~e~~v~~~~N~ 379 (454)
T KOG4806|consen 347 IAWNGSPDEELKYCIYVFNLPQ---RERSVVDFTNY 379 (454)
T ss_pred eeeccCcchheeEEEEEecccc---hhhhhhhhhcc
Confidence 3455666667788999999998 44555555443
No 330
>COG1369 POP5 RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]
Probab=29.37 E-value=2.1e+02 Score=21.43 Aligned_cols=66 Identities=18% Similarity=0.228 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHh-----hcCCCe----eEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025549 25 FRTTADDLFPLF-----EKYGKV----VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 25 ~~~t~~~L~~~f-----~~~G~i----~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
..++..+|.+++ .-||++ ....++..... ...|..-+.=+..+.+.+||..+. .++|.+|.|..-.
T Consensus 27 ~~i~~~~l~~~I~~s~l~llG~~gta~~~~~lv~~~~~-t~~GIvrc~R~~~~~v~aAL~l~~--~~~g~rv~I~~lg 101 (124)
T COG1369 27 EEITRGELVRLIRRSLLSLLGDVGTAKANPRLVKYYFS-TGTGIVRCRREYVDLVRAALMLAR--EVNGKRVIIVVLG 101 (124)
T ss_pred ccCChhHHHHHHHHHHHHHcCcccccccceeEEEEecc-CCceEEEEechhHHHHHHHHHHHH--HhCCceEEEEEee
Confidence 456766665544 345543 22333322111 222333333446777788877655 7788877776543
No 331
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.34 E-value=1.5e+02 Score=18.48 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=26.9
Q ss_pred CHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025549 28 TADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 28 t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
.-.+|..+|..++ .|..+.+..+. ....+..|.+.+...+..+++.|.
T Consensus 13 ~l~~i~~~l~~~~~~i~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~L~ 61 (72)
T cd04874 13 VLRDLTGVIAEHGGNITYTQQFIER---EGKARIYMELEGVGDIEELVEELR 61 (72)
T ss_pred hHHHHHHHHHhCCCCEEEEEEeccC---CCeEEEEEEEeccccHHHHHHHHh
Confidence 4567788888776 56666654331 122345566665444445555444
No 332
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=29.32 E-value=43 Score=19.21 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHhhcCCC
Q 025549 25 FRTTADDLFPLFEKYGK 41 (251)
Q Consensus 25 ~~~t~~~L~~~f~~~G~ 41 (251)
..+++++|+++|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46788999999987653
No 333
>PRK10672 rare lipoprotein A; Provisional
Probab=29.26 E-value=1.7e+02 Score=26.11 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=42.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhc-CCCeeEEEEccCCCCCCcceE-EEE-EEecHHHHHHHHhhhCCCcc
Q 025549 14 DTYSLLVLNITFRTTADDLFPLFEK-YGKVVDVFIPRDRRTGDSRGF-AFV-RYKYADEAQKAVDRLDGRVV 82 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~-~G~i~~v~i~~~~~~g~~~g~-afV-~f~~~~~A~~Ai~~l~g~~i 82 (251)
..+.|.|+-|......+.|.+-|.+ ||....|.. + +. -| .+| -|.+.++|+++++.|....+
T Consensus 288 g~y~VQVGAFsn~a~Ae~L~akL~~~~gvpa~V~~--~---g~--lYRVrLGPF~sr~eA~kl~~rLk~~g~ 352 (361)
T PRK10672 288 GNFVVQVGAVSDQQRAQQWQQSLSQRFGVPGRVTQ--N---GA--VYRVQLGPFASRQQASALQQRLQTEAQ 352 (361)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHhCCCeEEee--C---CC--EEEEEeCCCCCHHHHHHHHHHHHhccC
Confidence 3578999999988888888888874 774433321 1 11 22 223 48899999999998876533
No 334
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=29.24 E-value=2.7e+02 Score=24.14 Aligned_cols=83 Identities=14% Similarity=0.083 Sum_probs=57.1
Q ss_pred CcEEEEecCCC-CCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025549 15 TYSLLVLNITF-RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 15 ~~~l~V~nLp~-~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
+++|-+.+-|- .-+..-|...|.+.| |..|.|... ..|...++--..|.+.+-+.-....|+...|.+..|.|..+.
T Consensus 36 gTVv~~hGsPGSH~DFkYi~~~l~~~~-iR~I~iN~P-Gf~~t~~~~~~~~~n~er~~~~~~ll~~l~i~~~~i~~gHSr 113 (297)
T PF06342_consen 36 GTVVAFHGSPGSHNDFKYIRPPLDEAG-IRFIGINYP-GFGFTPGYPDQQYTNEERQNFVNALLDELGIKGKLIFLGHSR 113 (297)
T ss_pred eeEEEecCCCCCccchhhhhhHHHHcC-eEEEEeCCC-CCCCCCCCcccccChHHHHHHHHHHHHHcCCCCceEEEEecc
Confidence 45666778774 456677888898887 445544332 233444455567888888887777788888999999998887
Q ss_pred CCCchh
Q 025549 94 YGPNAE 99 (251)
Q Consensus 94 ~~~~~~ 99 (251)
...++-
T Consensus 114 Gcenal 119 (297)
T PF06342_consen 114 GCENAL 119 (297)
T ss_pred chHHHH
Confidence 654443
No 335
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=29.09 E-value=2.9e+02 Score=26.36 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=27.5
Q ss_pred cceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccCC
Q 025549 56 SRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (251)
Q Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 95 (251)
+.|-| +.|+++++|.+||.. +..-.|..|+|.|.-++
T Consensus 397 ~~GpA-~VF~see~a~~ai~~--g~I~~gdVvViRyeGPk 433 (552)
T PRK00911 397 FTGPA-RVFDSEEEAMEAILA--GKIKAGDVVVIRYEGPK 433 (552)
T ss_pred eeeeE-EEECCHHHHHHHHhc--CCCCCCeEEEEeCCCCC
Confidence 33444 569999999999974 55567888888887553
No 336
>KOG3346 consensus Phosphatidylethanolamine binding protein [General function prediction only]
Probab=28.77 E-value=1.9e+02 Score=23.33 Aligned_cols=47 Identities=21% Similarity=0.308 Sum_probs=29.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCC--CCCcceEEEEEEecH
Q 025549 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRR--TGDSRGFAFVRYKYA 67 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~--~g~~~g~afV~f~~~ 67 (251)
..+-+.-.|.|||-... -.+|.+....+...+. +|.+ -|.|+.|...
T Consensus 83 ~rE~lHWlV~nIPg~~~--------~~~G~~i~~Y~~P~Pp~~tG~H-RyVfll~rQ~ 131 (185)
T KOG3346|consen 83 FREWLHWLVTNIPGTDG--------ISKGQEISEYLGPGPPKGTGLH-RYVFLLYRQP 131 (185)
T ss_pred ceeEEEEEEEeecCCcc--------ccCCeEeeeeeCCCCCCCCCce-EEEEEEEEcC
Confidence 34445666788886543 3467666555555444 4444 6899999754
No 337
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.61 E-value=1.3e+02 Score=18.93 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=13.1
Q ss_pred EEecHHHHHHHHhhhCCCcc
Q 025549 63 RYKYADEAQKAVDRLDGRVV 82 (251)
Q Consensus 63 ~f~~~~~A~~Ai~~l~g~~i 82 (251)
.+-+.++++.|+..|+...|
T Consensus 44 ~~V~~~~~~~a~~~Lh~~f~ 63 (64)
T cd04917 44 FLVKEEDKDEVVQRLHSRLF 63 (64)
T ss_pred EEEeHHHHHHHHHHHHHHHh
Confidence 33455678888888776543
No 338
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=28.59 E-value=18 Score=27.93 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=15.8
Q ss_pred ceEEEEEEecHHHHHHHHhhh
Q 025549 57 RGFAFVRYKYADEAQKAVDRL 77 (251)
Q Consensus 57 ~g~afV~f~~~~~A~~Ai~~l 77 (251)
-|..+|-|.+.++|++.++..
T Consensus 114 Mg~~~~aF~~~~~A~~F~~~~ 134 (149)
T PF05573_consen 114 MGPDLIAFASKEDAEAFAKEH 134 (149)
T ss_dssp TS--EEEES-HHHHHHHHHHT
T ss_pred CCCcccccCCHHHHHHHHHHc
Confidence 367899999999999999975
No 339
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=28.34 E-value=1.7e+02 Score=27.04 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=33.7
Q ss_pred CCHHHHHHHhhcCCCe----eEEEEccCCCCCCcceEEEEE--Ee-cHHHHHHHHhhhCCCc--cCCceEEEE
Q 025549 27 TTADDLFPLFEKYGKV----VDVFIPRDRRTGDSRGFAFVR--YK-YADEAQKAVDRLDGRV--VDGREITVQ 90 (251)
Q Consensus 27 ~t~~~L~~~f~~~G~i----~~v~i~~~~~~g~~~g~afV~--f~-~~~~A~~Ai~~l~g~~--i~g~~l~v~ 90 (251)
+..++|.+.|..|-.+ ..+.+... . .+..+|. |. +++.+++||+.|.... ..++.|.|-
T Consensus 308 i~~~~i~~~l~~~~~~~gR~~~~r~~~~--~---~~~~iIDDsYahnP~s~~aaL~~l~~~~~~~~~r~i~V~ 375 (479)
T PRK14093 308 ADLALAALALSQVQPAAGRGVRHTLEVG--G---GEATLIDESYNANPASMAAALGVLGRAPVGPQGRRIAVL 375 (479)
T ss_pred CCHHHHHHHHHhCCCcCCcceEEEeecC--C---CCEEEEECCCCCCHHHHHHHHHHHHhhhccCCCCEEEEE
Confidence 5566777777766322 11111110 1 1467887 76 8888889999887643 245555554
No 340
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=28.01 E-value=1.2e+02 Score=25.48 Aligned_cols=38 Identities=16% Similarity=0.352 Sum_probs=24.3
Q ss_pred eEEEEccCCCCCCcceEEEEEEe----cHHHHHHHHhhhCCCc
Q 025549 43 VDVFIPRDRRTGDSRGFAFVRYK----YADEAQKAVDRLDGRV 81 (251)
Q Consensus 43 ~~v~i~~~~~~g~~~g~afV~f~----~~~~A~~Ai~~l~g~~ 81 (251)
.++....+. ....+|||+|.|. +....+.||+..|+..
T Consensus 196 LElt~~~~~-id~~kg~griafaip~d~~~~l~e~iK~~n~~i 237 (299)
T KOG2943|consen 196 LELTYNYDV-IDRAKGFGRIAFAIPTDDLPKLQEAIKSANGTI 237 (299)
T ss_pred EEEEeccCc-ccccccceeEEEeccccccccHHHHHHHhcccc
Confidence 344333332 4556799999996 4455678888777653
No 341
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=27.73 E-value=2.3e+02 Score=21.84 Aligned_cols=75 Identities=12% Similarity=0.066 Sum_probs=36.3
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEE-EEecHHHHHHHHh---hhCCCccCCceEEEEec
Q 025549 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFV-RYKYADEAQKAVD---RLDGRVVDGREITVQFA 92 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV-~f~~~~~A~~Ai~---~l~g~~i~g~~l~v~~a 92 (251)
.|.|.==|..++.++|.++|-..-..+.+.-.- +.....|--+ -|.+.++.+.|.+ .|+.....+.+|.+++.
T Consensus 53 ~V~V~yDp~~is~~~Ll~~f~~~hdPt~~~~Qg---~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~tei~ 129 (149)
T TIGR00401 53 AVQVTYDPKVISYEELLDVFWEIHDPTQGNRQG---NDIGTQYRSGIYYHSDEQEKAARASKERLQAAANYGDPIVTEIE 129 (149)
T ss_pred EEEEEECCCcCcHHHHHHHHHHhCCCCcCCCCC---CCCCCCceEEEEeCCHHHHHHHHHHHHHHHHhcccCCCeEEEEe
Confidence 455555567788888888775432222221110 0011234433 3445555555444 44332123567777765
Q ss_pred cC
Q 025549 93 KY 94 (251)
Q Consensus 93 ~~ 94 (251)
..
T Consensus 130 ~~ 131 (149)
T TIGR00401 130 PA 131 (149)
T ss_pred cC
Confidence 43
No 342
>PLN02655 ent-kaurene oxidase
Probab=27.69 E-value=1e+02 Score=28.17 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=34.2
Q ss_pred EEecCCCC---CCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhh
Q 025549 19 LVLNITFR---TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (251)
Q Consensus 19 ~V~nLp~~---~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 76 (251)
+||||..- -....|.+++..||.|..+.+. +.-+|...+.+.++.++..
T Consensus 9 ~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~pe~~k~il~~ 60 (466)
T PLN02655 9 VIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTG---------ASSVVVLNSTEVAKEAMVT 60 (466)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEEC---------CEeEEEeCCHHHHHHHHHh
Confidence 45665422 1346788888999998777653 2357778889999888763
No 343
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=27.68 E-value=65 Score=24.28 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=27.1
Q ss_pred cEEEEecCCCC-CCHHHHHHHhhcCCCeeEEEEcc
Q 025549 16 YSLLVLNITFR-TTADDLFPLFEKYGKVVDVFIPR 49 (251)
Q Consensus 16 ~~l~V~nLp~~-~t~~~L~~~f~~~G~i~~v~i~~ 49 (251)
.-|.|.|||.. .+++.|+.+...+|++..++...
T Consensus 105 vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 105 VWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred hhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 34677899976 57788889999999999987654
No 344
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=27.58 E-value=1.9e+02 Score=19.87 Aligned_cols=44 Identities=23% Similarity=0.350 Sum_probs=29.3
Q ss_pred CCHHHHHHHhh-----cCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHh
Q 025549 27 TTADDLFPLFE-----KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 27 ~t~~~L~~~f~-----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 75 (251)
++..+|.++++ .|+....+.|......| -+|+..+.++..-|+.
T Consensus 21 ~t~~~L~~~v~~~F~~~~~~~~~flIKYkD~dG-----DlVTIts~~dL~~A~~ 69 (81)
T cd06401 21 ITYDELLLMMQRVFRGKLGSSDDVLIKYKDEDG-----DLITIFDSSDLSFAIQ 69 (81)
T ss_pred ccHHHHHHHHHHHhccccCCcccEEEEEECCCC-----CEEEeccHHHHHHHHh
Confidence 78888887773 34444555555433333 6888888888888866
No 345
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=27.13 E-value=1.2e+02 Score=26.35 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=28.8
Q ss_pred CCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCC
Q 025549 26 RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (251)
Q Consensus 26 ~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (251)
.+|+++|+.+|..+.+ .+ ....|.|.+.+.|+.+++.|..
T Consensus 128 ~Vtd~ei~~~y~~~~~--~~------------~v~hIlv~~~~~A~~v~~~l~~ 167 (298)
T PRK04405 128 KVTNSQLKKAWKSYQP--KV------------TVQHILVSKKSTAETVIKKLKD 167 (298)
T ss_pred CCCHHHHHHHHHHhhh--hE------------EEEEEEecChHHHHHHHHHHHC
Confidence 5799999999987642 12 2356677788888888887653
No 346
>PRK12757 cell division protein FtsN; Provisional
Probab=27.11 E-value=1.6e+02 Score=24.99 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=46.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceE-EEEE-EecHHHHHHHHhhhCCCccCCceE
Q 025549 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGF-AFVR-YKYADEAQKAVDRLDGRVVDGREI 87 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~-afV~-f~~~~~A~~Ai~~l~g~~i~g~~l 87 (251)
..+.|.||-|......+.|..-|...|.-..| ..+ +. .| .+|- |.+.+.|..++..|...-|.+..|
T Consensus 183 ~~~~VQVGAF~~~~nAe~L~arL~~~G~~a~I--~~~---gg--~yRVrVGPf~sr~~A~~~~~rLk~~G~~~~ii 251 (256)
T PRK12757 183 QRWMVQCGSFKGTEQAESVRAQLAFAGIESRI--TTG---GG--WNRVVLGPYNSKAAADKMLQRLKGAGHSGCIP 251 (256)
T ss_pred ccEEEEEeeCCCHHHHHHHHHHHHhcCCceEE--eec---CC--EEEEEeCCCCCHHHHHHHHHHHHHcCCCCeEE
Confidence 45788899999888888888888877743333 221 11 12 3343 889999999999988766666544
No 347
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=27.10 E-value=2e+02 Score=26.50 Aligned_cols=35 Identities=11% Similarity=0.308 Sum_probs=24.2
Q ss_pred CCCCcEEEEecC-CCCCCHHHHHHHhhcCCCeeEEE
Q 025549 12 IRDTYSLLVLNI-TFRTTADDLFPLFEKYGKVVDVF 46 (251)
Q Consensus 12 ~~~~~~l~V~nL-p~~~t~~~L~~~f~~~G~i~~v~ 46 (251)
+...+.+||.-+ .....+.+|+..+...|+|.+..
T Consensus 347 p~g~~i~~~st~~~t~~~~~~l~~~~~~l~~~~~~~ 382 (443)
T PTZ00363 347 PKGKYIAIISTTVETNNPEKEIEPALKLLGPIEEKF 382 (443)
T ss_pred CCCcEEEEEEEecCCCCHHHHHHHHHHHhccchheE
Confidence 344566777766 44456778999999999875543
No 348
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=27.07 E-value=1.9e+02 Score=24.24 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=6.7
Q ss_pred CCHHHHHHHhhcCC
Q 025549 27 TTADDLFPLFEKYG 40 (251)
Q Consensus 27 ~t~~~L~~~f~~~G 40 (251)
.++++|.+++-..|
T Consensus 147 ~~ed~l~e~~ieag 160 (241)
T COG0217 147 IDEDELLEAAIEAG 160 (241)
T ss_pred CCHHHHHHHHHHCC
Confidence 44555555444443
No 349
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.01 E-value=1.9e+02 Score=18.97 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=24.8
Q ss_pred ecCCCCC-CHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEec
Q 025549 21 LNITFRT-TADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKY 66 (251)
Q Consensus 21 ~nLp~~~-t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~ 66 (251)
-|.|..+ --.||..+.-.|| .|..-.+..+. .+|||.|--
T Consensus 5 vnCPDktGLgcdlcr~il~fGl~i~rgd~sTDG------kWCyiv~wV 46 (69)
T cd04894 5 INCPDKTGLGCDLCRIILEFGLNITRGDDSTDG------RWCYIVFWV 46 (69)
T ss_pred EeCCCccCcccHHHHHHHHhceEEEecccccCC------cEEEEEEEE
Confidence 3556443 3457777777888 34555555442 589998853
No 350
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=26.94 E-value=15 Score=23.26 Aligned_cols=36 Identities=25% Similarity=0.489 Sum_probs=17.2
Q ss_pred ceEEEEEEec-HHHHHHHHhhhCCCccCCceEEEEecc
Q 025549 57 RGFAFVRYKY-ADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 57 ~g~afV~f~~-~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
.|||||..++ .++.--.-..|++ .++|-.+.|.+..
T Consensus 8 ~GfGFv~~~~~~~DifIp~~~l~~-A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 8 KGFGFVIPDDGGEDIFIPPRNLNG-AMDGDKVLVRITP 44 (58)
T ss_dssp SS-EEEEECT-TEEEEE-HHHHTT-S-TT-EEEEEEEE
T ss_pred CCCEEEEECCCCCCEEECHHHHCC-CCCCCEEEEEEec
Confidence 3899999887 2111112223343 3355666666654
No 351
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=26.77 E-value=63 Score=21.93 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=36.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCee----EEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC-ccCCceEE
Q 025549 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVV----DVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR-VVDGREIT 88 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~----~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~i~g~~l~ 88 (251)
+.+.|.|-|=+....+..+..+-..+|.-. .+.+..+ ..|.|+|...+.+.|+.....|... ...|.+|.
T Consensus 5 ~~~~vvL~NDe~ht~~~Vi~~L~~~~~~s~~~A~~~a~~v~-----~~G~avv~~~~~e~ae~~~~~l~~~g~~~~~PL~ 79 (82)
T PF02617_consen 5 DMYRVVLWNDEVHTFEQVIDVLRRVFGCSEEQARQIAMEVH-----REGRAVVGTGSREEAEEYAEKLQRAGRDSGHPLR 79 (82)
T ss_dssp -EEEEEEE--SSSBHHHHHHHHHHHC---HHHHHHHHHHHH-----HHSEEEEEEEEHHHHHHHHHHHHHHHHHTT---E
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHh-----HcCCEeeeeCCHHHHHHHHHHHHHHhhccCCCeE
Confidence 356677777555544444444444444210 0111111 2277999889999998887766533 56778887
Q ss_pred EE
Q 025549 89 VQ 90 (251)
Q Consensus 89 v~ 90 (251)
+.
T Consensus 80 ~t 81 (82)
T PF02617_consen 80 AT 81 (82)
T ss_dssp EE
T ss_pred Ee
Confidence 75
No 352
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=26.71 E-value=3.4e+02 Score=26.22 Aligned_cols=77 Identities=17% Similarity=0.172 Sum_probs=53.0
Q ss_pred CCCCcEEEEecCCC-CCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025549 12 IRDTYSLLVLNITF-RTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 12 ~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
..+...|.|.+... ..+.+.+++++++-| .+..+.+.. +...|.|.+.++...|.+.|....-.+..|.+
T Consensus 37 y~~~pavqis~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~--------~~~~~r~~~~~~q~~a~~~l~~~l~~~y~val 108 (604)
T PRK12933 37 YGEDAAVQVSAKAGLLLNVVELRQLLQAQGINVKRIDQKE--------GKTLIVLDDDSQQSQAKTLLSSMVKEPKELTL 108 (604)
T ss_pred cCCCCeEEEecCCCCcchHHHHHHHHHHCCCCCceEEEeC--------CEEEEEECCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 34566788887642 345677888888777 334444422 35899999999998888877766656677888
Q ss_pred EeccCCC
Q 025549 90 QFAKYGP 96 (251)
Q Consensus 90 ~~a~~~~ 96 (251)
+++...|
T Consensus 109 nl~~~~P 115 (604)
T PRK12933 109 SLASAAP 115 (604)
T ss_pred ecCccCc
Confidence 8776444
No 353
>PF11004 Kdo_hydroxy: 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase; InterPro: IPR021266 This bacterial family of proteins has no known function.
Probab=26.59 E-value=86 Score=26.86 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=29.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhh-cC--CCeeEEEEccCCCCCCcce
Q 025549 12 IRDTYSLLVLNITFRTTADDLFPLFE-KY--GKVVDVFIPRDRRTGDSRG 58 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~-~~--G~i~~v~i~~~~~~g~~~g 58 (251)
...+.+||+-+|++.++.+|. .||. .+ +..++|.+ ++.++..+|
T Consensus 18 LE~G~VL~fP~l~F~l~~~E~-~fL~p~~~d~k~KNIs~--~p~~~~l~G 64 (281)
T PF11004_consen 18 LEQGKVLYFPQLRFPLSPEER-AFLDPAIVDPKRKNISY--RPNTGSLRG 64 (281)
T ss_pred hhCCCEEEeCCCCCCCChhHH-hhcChhhhCCCCCceee--cCCCCceec
Confidence 356889999999999998887 4554 33 34455544 444565555
No 354
>PRK10927 essential cell division protein FtsN; Provisional
Probab=26.52 E-value=1.5e+02 Score=26.03 Aligned_cols=69 Identities=9% Similarity=-0.050 Sum_probs=48.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceE
Q 025549 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l 87 (251)
..+.|.||-|......+.|..-|...|.-.+|. . .|.-.-.-+-=|.+.++|+.++..|.+.-|.|..+
T Consensus 246 ~~~~VQvGSF~n~~nAE~LrAkLa~~G~~A~I~--~---~g~~~RVrVGPf~sr~eAe~a~~rLk~aGis~ci~ 314 (319)
T PRK10927 246 RRWMVQCGSFRGAEQAETVRAQLAFEGFDSKIT--T---NNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIR 314 (319)
T ss_pred CcEEEEeCccCCHHHHHHHHHHHHHcCCeeEEc--c---CCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCceee
Confidence 458899999998888899999998888666652 1 22111112224789999999999988776655544
No 355
>PRK03717 ribonuclease P protein component 2; Provisional
Probab=26.50 E-value=2.7e+02 Score=20.60 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=19.2
Q ss_pred eEEEEEEe--cHHHHHHHHhhhCCCccCCceEEEEec
Q 025549 58 GFAFVRYK--YADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 58 g~afV~f~--~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
+.|+|.-. ..+.+.+||..++ .|+|.++.+..-
T Consensus 66 ~~gIlRc~R~~~~~v~aAL~li~--~i~~~~v~ir~l 100 (120)
T PRK03717 66 QTGIVRCDRKHVEELRFALTLVT--EINGSKAIIRTL 100 (120)
T ss_pred CEEEEEcCchhHHHHHHHHHHHH--hCCCeeEEEEEe
Confidence 45666543 4455666666554 456777666544
No 356
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.49 E-value=1.7e+02 Score=18.18 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=25.8
Q ss_pred CHHHHHHHhhcCC-CeeEEEEccCCCC-CCcceEEEEEE--ecHHHHHHHHhhhC
Q 025549 28 TADDLFPLFEKYG-KVVDVFIPRDRRT-GDSRGFAFVRY--KYADEAQKAVDRLD 78 (251)
Q Consensus 28 t~~~L~~~f~~~G-~i~~v~i~~~~~~-g~~~g~afV~f--~~~~~A~~Ai~~l~ 78 (251)
.-.+|..+|..+| .|..+.+...... .......+|.| .+.++.+..++.|.
T Consensus 11 ~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~ 65 (73)
T cd04886 11 QLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALR 65 (73)
T ss_pred hHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHH
Confidence 3467777777766 6777765543210 11112233333 34455555555553
No 357
>PHA01632 hypothetical protein
Probab=26.45 E-value=66 Score=20.36 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=16.4
Q ss_pred EEEecCCCCCCHHHHHHHhhc
Q 025549 18 LLVLNITFRTTADDLFPLFEK 38 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~ 38 (251)
|.|..+|...|+++|+.++-+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 345689999999999887654
No 358
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=26.35 E-value=1.2e+02 Score=29.32 Aligned_cols=66 Identities=11% Similarity=0.199 Sum_probs=42.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEE-EEEecHHHHHHHHhh--hCCCccCCc
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAF-VRYKYADEAQKAVDR--LDGRVVDGR 85 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~af-V~f~~~~~A~~Ai~~--l~g~~i~g~ 85 (251)
.....+|+.+|...+.++....+|...-.++++.++.. ||+. ..|.++......|+. +.|..+.|+
T Consensus 297 ~~~~~~~~~G~st~lp~~~q~~i~~~ipGle~a~~~r~-------gy~~e~~~i~p~~l~~~le~k~~~gLf~AGq 365 (617)
T TIGR00136 297 LNSDEIYPNGLSTSLPEDVQLQIVRSIPGLENAEILRP-------GYAIEYDFFDPRQLKPTLETKLIQGLFFAGQ 365 (617)
T ss_pred CCCCeEEecCeecCCCHHHHHHHHHcCcCcccceEecc-------ccceEEeEEChhhCchhheeCCCCCeEEccc
Confidence 34567889999999999999999988777777777653 4442 344454444444442 234444444
No 359
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=26.28 E-value=74 Score=20.00 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=19.0
Q ss_pred CCCHHHHHHHhhcCCCeeEEEEcc
Q 025549 26 RTTADDLFPLFEKYGKVVDVFIPR 49 (251)
Q Consensus 26 ~~t~~~L~~~f~~~G~i~~v~i~~ 49 (251)
.+.+++|.++|.+.|-...|.|+.
T Consensus 29 ~~~~~~vl~~l~~nGg~CDCEVl~ 52 (53)
T PF10905_consen 29 QLDWEDVLEWLRENGGYCDCEVLY 52 (53)
T ss_pred CCCHHHHHHHHHHcCCCcceeeec
Confidence 345688999999999888887754
No 360
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=26.09 E-value=72 Score=28.34 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=26.7
Q ss_pred CCCCCCHHHHHHHhhc-CCCeeEEEEccC---CCC--CCcceEEEEEEecHH
Q 025549 23 ITFRTTADDLFPLFEK-YGKVVDVFIPRD---RRT--GDSRGFAFVRYKYAD 68 (251)
Q Consensus 23 Lp~~~t~~~L~~~f~~-~G~i~~v~i~~~---~~~--g~~~g~afV~f~~~~ 68 (251)
|...++.++|.++|.+ |..-.+|.|+.. +.+ -....||.|-|...+
T Consensus 253 l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~~~P~~k~V~GsN~cdIgf~~d~ 304 (349)
T COG0002 253 LKDLVTLEELHAAYEEFYAGEPFVRVVPEGGYPDTKAVAGSNFCDIGFAVDE 304 (349)
T ss_pred cCCCCCHHHHHHHHHHHhCCCCeEEEecCCCCCChhhhcCCcceEEEEEEcC
Confidence 4455899999999975 444455665542 111 122356666665443
No 361
>PF06804 Lipoprotein_18: NlpB/DapX lipoprotein; InterPro: IPR010653 This entry consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be non-essential [].; PDB: 2YH6_A 3TGO_D 2YH5_A 2LAF_A 2LAE_A 3SNS_A.
Probab=26.07 E-value=1.4e+02 Score=25.89 Aligned_cols=48 Identities=29% Similarity=0.387 Sum_probs=32.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHH
Q 025549 14 DTYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADE 69 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~ 69 (251)
.+..++|-+.|++..|.-|-.+|...| .|.... ...|.-||.|...++
T Consensus 197 ~g~~~l~~~~~fd~aW~rl~~aL~~~gf~V~d~d--------rs~G~~~v~y~~~~~ 245 (303)
T PF06804_consen 197 NGQPALILRAPFDRAWRRLGLALDRLGFTVEDRD--------RSQGVYYVRYKPPDS 245 (303)
T ss_dssp TS-EEEEEES-HHHHHHHHHHHHHHTTEEEEEEE--------TTTTEEEEEE----H
T ss_pred CCceEEEECCcHHHHHHHHHHHHHhCCCEEEecc--------cccEEEEEEEcCCCh
Confidence 456788889999999999999999999 344332 234899999987654
No 362
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=25.80 E-value=68 Score=22.98 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=26.3
Q ss_pred EEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025549 61 FVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 61 fV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
|-.|.-.+.|.+.++.|....|.|+.|.|.-
T Consensus 16 f~~~qC~~cA~Al~~~L~~~gI~Gk~i~l~T 46 (100)
T PF15643_consen 16 FKIFQCVECASALKQFLKQAGIPGKIIRLYT 46 (100)
T ss_pred cCceehHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 3467788899999999999999999998864
No 363
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=25.53 E-value=1.2e+02 Score=24.78 Aligned_cols=53 Identities=21% Similarity=0.319 Sum_probs=33.9
Q ss_pred CCHHHHHHHhhcCCC---eeEEEEccCCCCCCcceEEEEEE-ecHHHHHHHHhhhCCCccC
Q 025549 27 TTADDLFPLFEKYGK---VVDVFIPRDRRTGDSRGFAFVRY-KYADEAQKAVDRLDGRVVD 83 (251)
Q Consensus 27 ~t~~~L~~~f~~~G~---i~~v~i~~~~~~g~~~g~afV~f-~~~~~A~~Ai~~l~g~~i~ 83 (251)
.+.+++.++...+|. |....|.. .|..++ +-|.| .+.++|..+...|=|..|.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~---GgRGK~-GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLA---GGRGKA-GGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSS---STTTTT-TCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEee---cCcccC-CceeecCCHHHHHHHHHHHhCCceE
Confidence 467788877777664 45555543 334444 34444 4789999998888888765
No 364
>PF01693 Cauli_VI: Caulimovirus viroplasmin; InterPro: IPR011320 This entry represents the N-terminal domain of RNase HI, which has a 3-layer alpha/beta/alpha structure []. This domain is lacking in retroviral and prokaryotic enzymes, but shows a striking structural similarity to the ribosomal protein L9 N-terminal domain, and may function as a regulatory RNA-binding module. However, the topology of this domain differs from structures of known RNA binding domains such as the double-stranded RNA binding domain (dsRBD), the hnRNP K homology (KH) domain and the RNP motif. Eukaryotic RNases HI possess either one or two copies of this small N-terminal domain, in addition to the well-conserved catalytic RNase H domain. RNase HI belongs to the family of ribonuclease H enzymes that recognise RNA:DNA hybrids and degrade the RNA component. ; PDB: 1QHK_A 3BSU_C.
Probab=25.44 E-value=1.3e+02 Score=17.65 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=11.6
Q ss_pred eEEEEEEecHHHHHHH
Q 025549 58 GFAFVRYKYADEAQKA 73 (251)
Q Consensus 58 g~afV~f~~~~~A~~A 73 (251)
|..|-.|.+.++|+++
T Consensus 29 ga~~k~F~t~~eA~~~ 44 (44)
T PF01693_consen 29 GAIYKSFKTREEAEEF 44 (44)
T ss_dssp T-EEEEESSHHHHHHH
T ss_pred CceECCcCCHHHHhhC
Confidence 4468888888888764
No 365
>PRK07868 acyl-CoA synthetase; Validated
Probab=25.24 E-value=4.1e+02 Score=27.24 Aligned_cols=57 Identities=14% Similarity=0.047 Sum_probs=36.0
Q ss_pred CCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe-----cHHHHHHHHhhhCCCcc
Q 025549 26 RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK-----YADEAQKAVDRLDGRVV 82 (251)
Q Consensus 26 ~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~-----~~~~A~~Ai~~l~g~~i 82 (251)
.+.-.+|+.++.++..|..+.++..+..+...-.|||+.. +.++...++..|...++
T Consensus 868 ~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~~~~~~~L~~~l~~l~~y~v 929 (994)
T PRK07868 868 PVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGAAITAADLTEALASLPVGLG 929 (994)
T ss_pred eEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCCcCCHHHHHHHHHhCCCCcC
Confidence 3677999999999998988766643333333456788754 23444555554544444
No 366
>PF15063 TC1: Thyroid cancer protein 1
Probab=25.20 E-value=42 Score=22.70 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=22.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCe
Q 025549 16 YSLLVLNITFRTTADDLFPLFEKYGKV 42 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i 42 (251)
.+--+.||=.+++...|..+|..-|..
T Consensus 26 RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 26 RKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhhhhccCHHHHHHHHHHccch
Confidence 344567888999999999999999965
No 367
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=25.16 E-value=2.2e+02 Score=19.20 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=42.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
...|+|.|-|.-+ +-|..+|..-| .|..+.+-.....+ .--+.++...+.+..+..++.|+..
T Consensus 4 tisi~v~n~pGVL--~Ri~~lf~rRgfNI~Sl~vg~te~~~-~sriti~~~~~~~~i~qi~kQL~KL 67 (76)
T PRK06737 4 TFSLVIHNDPSVL--LRISGIFARRGYYISSLNLNERDTSG-VSEMKLTAVCTENEATLLVSQLKKL 67 (76)
T ss_pred EEEEEEecCCCHH--HHHHHHHhccCcceEEEEecccCCCC-eeEEEEEEECCHHHHHHHHHHHhCC
Confidence 3467888877643 56788898877 68887765432222 2234566567888888888887764
No 368
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=24.91 E-value=1.4e+02 Score=27.64 Aligned_cols=49 Identities=14% Similarity=0.145 Sum_probs=33.7
Q ss_pred EEecCCCCC--CHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhh
Q 025549 19 LVLNITFRT--TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (251)
Q Consensus 19 ~V~nLp~~~--t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 76 (251)
+||||+.-. ....+.++..+||.|..+.+.. .-+|...+.+.++.++..
T Consensus 41 l~G~l~~~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~dpe~~~~vl~~ 91 (504)
T PLN00110 41 LLGALPLLGNMPHVALAKMAKRYGPVMFLKMGT---------NSMVVASTPEAARAFLKT 91 (504)
T ss_pred eeechhhcCCchHHHHHHHHHHhCCeEEEEcCC---------ccEEEECCHHHHHHHHHh
Confidence 457765332 2466777788999987766521 247788899999988764
No 369
>PHA02131 hypothetical protein
Probab=24.85 E-value=1.2e+02 Score=19.17 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=13.2
Q ss_pred hcCCCeeEEEEccCCCCCCcceEEEEEEec
Q 025549 37 EKYGKVVDVFIPRDRRTGDSRGFAFVRYKY 66 (251)
Q Consensus 37 ~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 66 (251)
.+...|+.|.++....+.. -.|||.|.+
T Consensus 10 akvngitkvdmirgh~~~g--~~c~imfk~ 37 (70)
T PHA02131 10 AKVNGITKVDMIRGHYRFG--ISCWIMFKN 37 (70)
T ss_pred hhhcCceEEEEeccceecc--eEEEEEEcC
Confidence 3444566666665432210 125665543
No 370
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=24.82 E-value=1.3e+02 Score=20.59 Aligned_cols=57 Identities=7% Similarity=0.063 Sum_probs=34.6
Q ss_pred EEEecCCCCCCHHHHHHHhh-cCCC-eeEEEEccC-CCCCCcceEEEEEEecHHHHHHHHhhhCCC
Q 025549 18 LLVLNITFRTTADDLFPLFE-KYGK-VVDVFIPRD-RRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~-~~G~-i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
+++--+|..+...+|.+.+. +++. -..+.+... ..+| .+|.. +.++.+.|+....+.
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s~-----~~v~l-~d~dle~aws~~~~~ 71 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEASG-----EDVIL-SDTNMEDVWSQAKDG 71 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCCC-----CccCc-ChHHHHHHHHhhcCC
Confidence 34456788888888888774 3332 133333322 2222 45666 788999999876654
No 371
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=24.66 E-value=2.5e+02 Score=23.50 Aligned_cols=44 Identities=18% Similarity=0.153 Sum_probs=28.0
Q ss_pred CcEEEEecCCCCC--CHHHHHHHhhcCCCee----EEEEccCCCCCCcceEEEEEEe
Q 025549 15 TYSLLVLNITFRT--TADDLFPLFEKYGKVV----DVFIPRDRRTGDSRGFAFVRYK 65 (251)
Q Consensus 15 ~~~l~V~nLp~~~--t~~~L~~~f~~~G~i~----~v~i~~~~~~g~~~g~afV~f~ 65 (251)
+..|+|.-|..+. |..+|..+|.++|-.. .|.++.+ -.|+|+|.
T Consensus 94 GvaiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe-------~kG~i~~~ 143 (238)
T TIGR01033 94 GVAIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFS-------RKGVIEVP 143 (238)
T ss_pred ceEEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeee-------cceEEEEC
Confidence 4557777777554 6789999999987421 2444333 23777774
No 372
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=24.57 E-value=51 Score=29.87 Aligned_cols=63 Identities=11% Similarity=0.018 Sum_probs=37.4
Q ss_pred CCCcEEEEecCCCCCCH-HHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHh
Q 025549 13 RDTYSLLVLNITFRTTA-DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~-~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 75 (251)
-+++.|||+|-=+..-+ +.--++..+-|.|..|.|-..+..-...--.||.|.++.+.-..++
T Consensus 398 LDGKRLYVt~SLys~WD~QFYPE~v~~G~~miqidvdt~~g~~~lN~~flvDf~~ep~gPsL~h 461 (476)
T KOG0918|consen 398 LDGKRLYVTNSLYSAWDRQFYPELVSKGSHMIQIDVDTVKGGLSLNPDFLVDFGKEPDGPSLAH 461 (476)
T ss_pred cCCcEEEEEchhhhhhHhhhCHHHHhcCceEEEEeeeccCCceeeCccceEEccCCCCCcchhh
Confidence 35789999986554444 4444556677788888874432111112236889988655444433
No 373
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=24.22 E-value=1.1e+02 Score=24.20 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=16.9
Q ss_pred CCCCHHHHHHHhhcCCCeeEE
Q 025549 25 FRTTADDLFPLFEKYGKVVDV 45 (251)
Q Consensus 25 ~~~t~~~L~~~f~~~G~i~~v 45 (251)
..+|-++|.++|.+|++-..+
T Consensus 107 hgcT~e~I~~~F~~ys~~~~~ 127 (175)
T PF12993_consen 107 HGCTLEDILELFHKYSDNVHC 127 (175)
T ss_pred CCcCHHHHHHHHHHhcCCeEE
Confidence 578999999999999964333
No 374
>PF04008 Adenosine_kin: Adenosine specific kinase; InterPro: IPR007153 The structure of a member of this family from the hyperthermophilic archaeon Pyrobaculum aerophilum contains a modified histidine residue which is interpreted as stable phosphorylation. In vitro binding studies confirmed that adenosine and AMP but not ADP or ATP bind to the protein [].; PDB: 1VGG_A 1RLH_A 1WVQ_A 2GL0_F 2JB7_B 2EKM_C 2D16_D.
Probab=24.13 E-value=2.1e+02 Score=22.09 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=22.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCC
Q 025549 12 IRDTYSLLVLNITFRTTADDLFPLFEKYG 40 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G 40 (251)
..++..|.||.-++--|-+||.+.+-.-.
T Consensus 5 ~Pe~~N~IlGqsHFIKTvEDl~Ealv~sv 33 (155)
T PF04008_consen 5 KPEGCNVILGQSHFIKTVEDLYEALVTSV 33 (155)
T ss_dssp --TTEEEEEEEESSTTHHHHHHHHHHCCS
T ss_pred CCCCceEEEeccchhhhHHHHHHHHhhcC
Confidence 34578899999999889999999886543
No 375
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=23.42 E-value=2.8e+02 Score=25.82 Aligned_cols=60 Identities=23% Similarity=0.270 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHhhcC----CCeeEEEEccCCCCCCcceEEEEEEe-cHHHHHHHHhhhCCCccCCceEEEEecc
Q 025549 25 FRTTADDLFPLFEKY----GKVVDVFIPRDRRTGDSRGFAFVRYK-YADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 25 ~~~t~~~L~~~f~~~----G~i~~v~i~~~~~~g~~~g~afV~f~-~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
..+..++|.+-|..| |-.+.|.+- + --++|.|. +++..+++|..+. ....|+.|.|.-+-
T Consensus 304 lG~~~e~i~~~l~~~~~v~GRmE~v~~~-~-------~~v~VDyAHnPd~le~~L~~~~-~~~~g~li~VfG~g 368 (475)
T COG0769 304 LGVDLEDILAGLETLKPVPGRMELVNIG-G-------KLVIVDYAHNPDGLEKALRAVR-LHAAGRLIVVFGCG 368 (475)
T ss_pred cCCCHHHHHHHHHhcCCCCCcceEecCC-C-------CeEEEEeccChHHHHHHHHHHH-hhcCCcEEEEECcc
Confidence 456677788777765 444444443 2 34999998 7777788888776 22356656665543
No 376
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.37 E-value=2e+02 Score=18.14 Aligned_cols=47 Identities=15% Similarity=0.321 Sum_probs=26.0
Q ss_pred CHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEe--cHHHHHHHHhh
Q 025549 28 TADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYK--YADEAQKAVDR 76 (251)
Q Consensus 28 t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~--~~~~A~~Ai~~ 76 (251)
.-..|.++|..+| .|..+...... +......+|.++ +.+.+.++|.+
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~--~~~~~~v~i~v~~~~~~~~~~~L~~ 63 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSK--EEDNKILVFRVQTMNPRPIIEDLRR 63 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccC--CCCeEEEEEEEecCCHHHHHHHHHH
Confidence 4467888888887 56666543321 222233455554 44555555553
No 377
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.09 E-value=2.7e+02 Score=19.37 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=27.6
Q ss_pred CHHHHHHHhhcCC-CeeEEEEccCCCCCCcce-EEEEEEec--HHHHHHHHhhhC
Q 025549 28 TADDLFPLFEKYG-KVVDVFIPRDRRTGDSRG-FAFVRYKY--ADEAQKAVDRLD 78 (251)
Q Consensus 28 t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g-~afV~f~~--~~~A~~Ai~~l~ 78 (251)
.-.+|...|..+| .|+.|.--.. .+..-. +-||+|+- .+..+.||+.|.
T Consensus 27 sL~~vL~~Fa~~~INLt~IeSRP~--~~~~~~Y~FfVDieg~~~~~~~~~l~~L~ 79 (90)
T cd04931 27 ALAKVLRLFEEKDINLTHIESRPS--RLNKDEYEFFINLDKKSAPALDPIIKSLR 79 (90)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccC--CCCCceEEEEEEEEcCCCHHHHHHHHHHH
Confidence 3567888888887 4555543322 112212 34788873 345566777664
No 378
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=23.05 E-value=90 Score=30.93 Aligned_cols=36 Identities=22% Similarity=0.163 Sum_probs=24.6
Q ss_pred ceEEEEEEecHHHHHHHHhhhCCCccCCce-EEEEec
Q 025549 57 RGFAFVRYKYADEAQKAVDRLDGRVVDGRE-ITVQFA 92 (251)
Q Consensus 57 ~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~-l~v~~a 92 (251)
.+.|||+|++...|+.|.+..-+..+.+.. +.+..+
T Consensus 357 ~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iapa 393 (827)
T COG5594 357 TKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAPA 393 (827)
T ss_pred cccEEEEEehhHHHHHHHHhhhhhhhhcceeeeecCC
Confidence 458999999999999998865444443333 444433
No 379
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=23.03 E-value=1.6e+02 Score=17.17 Aligned_cols=32 Identities=9% Similarity=0.217 Sum_probs=22.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEc
Q 025549 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIP 48 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~ 48 (251)
+.|..-+|...++.++|..++..+.+ ..|.++
T Consensus 7 a~v~~~~fSgHad~~~L~~~i~~~~p-~~vilV 38 (43)
T PF07521_consen 7 ARVEQIDFSGHADREELLEFIEQLNP-RKVILV 38 (43)
T ss_dssp SEEEESGCSSS-BHHHHHHHHHHHCS-SEEEEE
T ss_pred EEEEEEeecCCCCHHHHHHHHHhcCC-CEEEEe
Confidence 45555568888999999999998855 555443
No 380
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=22.96 E-value=95 Score=22.39 Aligned_cols=24 Identities=8% Similarity=0.230 Sum_probs=17.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhc
Q 025549 12 IRDTYSLLVLNITFRTTADDLFPLFEK 38 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~ 38 (251)
..++..++++.|| +.+||.+|+..
T Consensus 61 ekeg~~i~~g~lP---t~~eVe~Fl~~ 84 (105)
T PF09702_consen 61 EKEGNYIIVGYLP---TDEEVEDFLDD 84 (105)
T ss_pred cCCCCEEecCCCC---ChHHHHHHHHH
Confidence 4566788899998 45677777653
No 381
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=22.95 E-value=3e+02 Score=22.32 Aligned_cols=39 Identities=8% Similarity=0.072 Sum_probs=29.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCC
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDR 51 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~ 51 (251)
.+.+.|+|.|...--.-..|-.+|..+| .|..+.+-...
T Consensus 146 ~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~ 185 (208)
T TIGR00719 146 GEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKD 185 (208)
T ss_pred CCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecC
Confidence 3467888888876666778888888888 67788777653
No 382
>PLN00168 Cytochrome P450; Provisional
Probab=22.94 E-value=1.9e+02 Score=26.80 Aligned_cols=51 Identities=22% Similarity=0.133 Sum_probs=34.9
Q ss_pred EEEEecCCCCC-----CHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhh
Q 025549 17 SLLVLNITFRT-----TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (251)
Q Consensus 17 ~l~V~nLp~~~-----t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 76 (251)
.-+||||..-. ....+.++..+||.|..+.+. +.-+|...+.+.++.++..
T Consensus 43 ~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~dpe~~~~il~~ 98 (519)
T PLN00168 43 VPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVG---------SRLSVFVADRRLAHAALVE 98 (519)
T ss_pred CcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcC---------CccEEEECCHHHHHHHHHh
Confidence 44578875321 134567778899998777653 2357778899999988864
No 383
>PF09507 CDC27: DNA polymerase subunit Cdc27; InterPro: IPR019038 This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterised by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. ; GO: 0006260 DNA replication, 0005634 nucleus; PDB: 1U76_B 3E0J_B.
Probab=22.82 E-value=36 Score=30.73 Aligned_cols=59 Identities=12% Similarity=0.176 Sum_probs=31.1
Q ss_pred cCCCCCCHHHHHHHhhcC-----CCeeEEEEccCCCCCCcceEEE-------EEEecHHHHHHHHhhhCCC
Q 025549 22 NITFRTTADDLFPLFEKY-----GKVVDVFIPRDRRTGDSRGFAF-------VRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 22 nLp~~~t~~~L~~~f~~~-----G~i~~v~i~~~~~~g~~~g~af-------V~f~~~~~A~~Ai~~l~g~ 80 (251)
+|+.++..+.|.+|+..+ +.|.-++|+..........+.. |.+...++.+.|+..|...
T Consensus 13 ~ihvn~AK~~L~ef~~~~~~k~~~~l~atYlvsG~~k~~~~~~~~~~~~~~~v~Lv~e~~Le~~k~~f~~v 83 (430)
T PF09507_consen 13 GIHVNQAKQMLYEFHEKQNAKKPGSLHATYLVSGWLKDNGEPSHNDEEMDYSVILVREEDLEEAKAKFEKV 83 (430)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHS-S-EEEEEEEEEEESSSSEEEE-------EEEEETTTHHHHHHH-SSE
T ss_pred CCCHHHHHHHHHHHHHhccccCCCceEEEEEEEEEeCCCCCccccccccceeEEEeeHHHHHHHHHhcccc
Confidence 455566677888888877 4565555554322222212222 6666666777777766643
No 384
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=22.70 E-value=1.9e+02 Score=24.93 Aligned_cols=61 Identities=8% Similarity=-0.057 Sum_probs=34.1
Q ss_pred cCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccC
Q 025549 22 NITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD 83 (251)
Q Consensus 22 nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~ 83 (251)
.+|..++.++|++.|..++.-..+.+....... ....|++.-.+-..+++.+.++....++
T Consensus 56 ~~p~~~~~~~L~~~L~~l~~~l~l~i~i~~~~~-~~ri~vl~Sg~g~nl~al~~~~~~~~~~ 116 (286)
T PRK13011 56 HSEEGLDEDALRAGFAPIAARFGMQWELHDPAA-RPKVLIMVSKFDHCLNDLLYRWRIGELP 116 (286)
T ss_pred ecCCCCCHHHHHHHHHHHHHHhCcEEEEeeccc-CceEEEEEcCCcccHHHHHHHHHcCCCC
Confidence 478888899999988877643322222221111 2245555555555666666555544443
No 385
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=22.63 E-value=1.9e+02 Score=24.39 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=24.6
Q ss_pred EEEEecCCC---CCCHHHHHHHhhcCCCeeEEEEccCC
Q 025549 17 SLLVLNITF---RTTADDLFPLFEKYGKVVDVFIPRDR 51 (251)
Q Consensus 17 ~l~V~nLp~---~~t~~~L~~~f~~~G~i~~v~i~~~~ 51 (251)
-|.|.|+|. .+-..+|.++|..-|.-..|.|+.+.
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~de 40 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDE 40 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechh
Confidence 377889995 35678999999888753355555554
No 386
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=22.58 E-value=2.8e+02 Score=19.40 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=29.1
Q ss_pred CCCHHHHHHHhhcCCCe---eEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhh
Q 025549 26 RTTADDLFPLFEKYGKV---VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (251)
Q Consensus 26 ~~t~~~L~~~f~~~G~i---~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (251)
+++.++|.+.+.+.=.| ..+.|...-..| -+|.+.+.++.+.||+.+
T Consensus 24 d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedg-----d~V~l~~D~DL~~a~~~~ 73 (91)
T cd06398 24 DLNMDGLREKVEELFSLSPDADLSLTYTDEDG-----DVVTLVDDNDLTDAIQYF 73 (91)
T ss_pred CCCHHHHHHHHHHHhCCCCCCcEEEEEECCCC-----CEEEEccHHHHHHHHHHH
Confidence 56777666655432122 233333322233 699999999999999964
No 387
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.50 E-value=3.2e+02 Score=20.00 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=27.2
Q ss_pred CHHHHHHHhhcCC-CeeEEEEccCCCCCCcc-eEEEEEEe-cHHHHHHHHhhhCC
Q 025549 28 TADDLFPLFEKYG-KVVDVFIPRDRRTGDSR-GFAFVRYK-YADEAQKAVDRLDG 79 (251)
Q Consensus 28 t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~-g~afV~f~-~~~~A~~Ai~~l~g 79 (251)
.-.+|.+.|..+| .|+.|.--.. .+... -+-||+++ +.++.+.||+.|..
T Consensus 54 sL~~iL~~Fa~~gINLt~IESRP~--~~~~~eY~FfIdieg~~~~~~~aL~~L~~ 106 (115)
T cd04930 54 SLSRILKVFETFEAKIHHLESRPS--RKEGGDLEVLVRCEVHRSDLLQLISSLRQ 106 (115)
T ss_pred HHHHHHHHHHHCCCCEEEEECCcC--CCCCceEEEEEEEEeCHHHHHHHHHHHHH
Confidence 3466777888877 4455433222 12221 23466666 44556777777654
No 388
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=22.48 E-value=2.1e+02 Score=22.62 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=32.5
Q ss_pred CCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCC
Q 025549 27 TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (251)
Q Consensus 27 ~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (251)
.+.++|..++..+|-..-++-......| .+-+...+.++++.|+..+..
T Consensus 15 ~~~~~l~~a~~~iG~P~vlK~~~~GYDG----kGq~~i~~~~dl~~a~~~~~~ 63 (172)
T PF02222_consen 15 DSLEDLEEAAESIGFPAVLKTRRGGYDG----KGQFVIRSEEDLEKAWQELGG 63 (172)
T ss_dssp SSHHHHHHHHHHHTSSEEEEESSSSCTT----TTEEEESSGGGHHHHHHHTTT
T ss_pred CCHHHHHHHHHHcCCCEEEEccCcCcCC----CccEEECCHHHHHHHHHhcCC
Confidence 4678999999998865555433322232 244456688889999888743
No 389
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=22.39 E-value=2.8e+02 Score=19.33 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=32.2
Q ss_pred EEEEecCCCCCCHHHHHHHhhc-CCCee--EEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025549 17 SLLVLNITFRTTADDLFPLFEK-YGKVV--DVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~-~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
..|.-.-+..++.++|.+.+.. |-.+. .+.|.+....| -.|++.+.++.+.|+..++
T Consensus 17 RRf~l~~~~~~s~~~L~~~V~~~f~~l~~~~ftlky~DeeG-----DlvtIssdeEL~~A~~~~~ 76 (87)
T cd06402 17 RRFAIDEDVSTSYEYLVEKVAAVFPSLRGKNFQLFWKDEEG-----DLVAFSSDEELVMALGSLN 76 (87)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHccccCCCcEEEEEECCCC-----CEEeecCHHHHHHHHHcCC
Confidence 3343333445566666655543 32221 33333222233 5899999999999999765
No 390
>PF06130 PduL: Propanediol utilisation protein PduL; InterPro: IPR008300 Salmonella enterica subsp. enterica serovar Typhimurium degrades 1,2-propanediol by a pathway that requires coenzyme B12, adenosylcobalamin (AdoCbl). Proteins required for 1,2-propanediol degradation are encoded by the pdu operon []. PduL functions in this pathway, but its exact role is not yet determined. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilization of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilization (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and coregulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR010254 from INTERPRO and IPR009204 from INTERPRO for more details on the propanediol utilization pathway and the pdu operon.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=22.36 E-value=2.2e+02 Score=19.03 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=26.0
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCCeeEEEE
Q 025549 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFI 47 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i 47 (251)
|.|.+=.-.++.++++.||-+-|+...+.+
T Consensus 4 viva~RHIHms~~da~~l~~~dg~~v~ve~ 33 (71)
T PF06130_consen 4 VIVAARHIHMSPEDAEKLFGQDGQFVSVEV 33 (71)
T ss_pred EEEEccccCCCHHHHHHhCCCCCCEEEEEE
Confidence 667777788999999999999998888777
No 391
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.35 E-value=2.8e+02 Score=19.25 Aligned_cols=24 Identities=25% Similarity=0.229 Sum_probs=18.3
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCe
Q 025549 17 SLLVLNITFRTTADDLFPLFEKYGKV 42 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i 42 (251)
.|+||+.+. .+..+++++.++|--
T Consensus 2 vliVGG~~~--~~~~~~~~~~~~G~~ 25 (97)
T PF10087_consen 2 VLIVGGRED--RERRYKRILEKYGGK 25 (97)
T ss_pred EEEEcCCcc--cHHHHHHHHHHcCCE
Confidence 688888765 457888999999843
No 392
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=22.34 E-value=1.9e+02 Score=24.72 Aligned_cols=41 Identities=29% Similarity=0.470 Sum_probs=29.8
Q ss_pred HHHHHhhcCC--CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025549 31 DLFPLFEKYG--KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 31 ~L~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
-|++.|+++| .|+.+ .|..-|.-||-+...++|+..++.|.
T Consensus 44 i~~~~~~~~~~g~~~t~-------~ga~ggv~~~p~~~~~~~~~~~~~l~ 86 (268)
T TIGR01743 44 IIKETFEKFGIGKLLTV-------PGAAGGVKYIPKMSQAEAEEFVEELC 86 (268)
T ss_pred HHHHHHHhcCCceEEEe-------CCCCCCeEEEeCCCHHHHHHHHHHHH
Confidence 4788998765 44443 34444888999999999998877654
No 393
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.15 E-value=89 Score=24.75 Aligned_cols=42 Identities=12% Similarity=0.160 Sum_probs=23.6
Q ss_pred ceEEEEEEe----cHHHHHHHHhhhCCCccCCceEEEEeccCCCch
Q 025549 57 RGFAFVRYK----YADEAQKAVDRLDGRVVDGREITVQFAKYGPNA 98 (251)
Q Consensus 57 ~g~afV~f~----~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~~ 98 (251)
.|+-.|+|- -.+....|+..++...+..--|.|..+.+....
T Consensus 109 egWEHIEiVlP~~peel~~~~~~l~~~~~l~~~gi~vk~ssp~ge~ 154 (185)
T COG3102 109 EGWEHIEIVLPGDPEELNARALALLNDEFLWELGISVKLSSPQGEH 154 (185)
T ss_pred cCceeEEEEcCCChHHHHHHHHhhcchhhcccCceEEEecCCCCcc
Confidence 345555553 234445566666755554444788777665443
No 394
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=22.09 E-value=2e+02 Score=25.31 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=37.9
Q ss_pred CCCHHHHHHHhhcC-----CC--eeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCcc-CCceEEEEecc
Q 025549 26 RTTADDLFPLFEKY-----GK--VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV-DGREITVQFAK 93 (251)
Q Consensus 26 ~~t~~~L~~~f~~~-----G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i-~g~~l~v~~a~ 93 (251)
.++.+.|+.+|+.- .. |+.|........|+.+ +-|.+.+.+.++.++-..++... .+..|.|.++.
T Consensus 157 ~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIk--gavnl~~~~~~~~~f~~~~~~~~~~~~~i~IFhCe 230 (325)
T KOG3772|consen 157 YISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIK--GAVNLYSKELLQDFFLLKDGVPSGSKRVILIFHCE 230 (325)
T ss_pred ccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccc--cceecccHhhhhhhhccccccccccCceeEEEEee
Confidence 35777788777642 22 4555555555555555 34555666667776665566554 44555555554
No 395
>PF01823 MACPF: MAC/Perforin domain; InterPro: IPR020864 The membrane attack complex/perforin (MACPF) domain is conserved in bacteria, fungi, mammals and plants. It was originally identified and named as being common to five complement components (C6, C7, C8-alpha, C8-beta, and C9) and perforin. These molecules perform critical functions in innate and adaptive immunity. The MAC family proteins and perforin are known to participate in lytic pore formation. In response to pathogen infection, a sequential and highly specific interaction between the constituent elements occurs to form transmembrane channels which are known as the membrane-attack complex (MAC).Only a few other MACPF proteins have been characterised and several are thought to form pores for invasion or protection [, , ]. Examples are proteins from malarial parasites [], the cytolytic toxins from sea anemones [], and proteins that provide plant immunity [, ]. Functionally uncharacterised MACPF proteins are also evident in pathogenic bacteria such as Chlamydia spp [] and Photorhabdus luminescens (Xenorhabdus luminescens) []. The MACPF domain is commonly found to be associated with other N- and C-terminal domains, such as TSP1 (see PDOC50092 from PROSITEDOC), LDLRA (see PDOC00929 from PROSITEDOC), EGF-like (see PDOC00021 from PROSITEDOC),Sushi/CCP/SCR (see PDOC50923 from PROSITEDOC), FIMAC or C2 (see PDOC00380 from PROSITEDOC). They probably control or target MACPF function [, ]. The MACPF domain oligomerizes, undergoes conformational change, and is required for lytic activity. The MACPF domain consists of a central kinked four-stranded antiparallel beta sheet surrounded by alpha helices and beta strands, forming two structural segments. Overall, the MACPF domain has a thin L-shaped appearance. MACPF domains exhibit limited sequence similarity but contain a signature [YW]-G-[TS]-H-[FY]-x(6)-G-G motif [, , ]. Some proteins known to contain a MACPF domain are listed below: Vertebrate complement proteins C6 to C9. Complement factors C6 to C9 assemble to form a scaffold, the membrane attack complex (MAC), that permits C9 polymerisation into pores that lyse Gram-negative pathogens [, ]. Vertebrate perforin. It is delivered by natural killer cells and cytotoxic T lymphocytes and forms oligomeric pores (12 to 18 monomers) in the plasma membrane of either virus-infected or transformed cells. Arabidopsis thaliana (Mouse-ear cress) constitutively activated cell death 1 (CAD1) protein. It is likely to act as a mediator that recognises plant signals for pathogen infection []. Arabidopsis thaliana (Mouse-ear cress) necrotic spotted lesions 1 (NSL1) protein []. Venomous sea anemone Phyllodiscus semoni (Night anemone) toxins PsTX-60A and PsTX-60B []. Venomous sea anemone Actineria villosa (Okinawan sea anemone) toxin AvTX-60A []. Plasmodium sporozoite microneme protein essential for cell traversal 2 (SPECT2). It is essential for the membrane-wounding activity of the sporozoite and is involved in its traversal of the sinusoidal cell layer prior to hepatocyte-infection []. P. luminescens Plu-MACPF. Although nonlytic, it was shown to bind to cell membranes []. Chlamydial putative uncharacterised protein CT153 []. ; PDB: 2QP2_A 3OJY_B 3NSJ_A 4E0S_B 3T5O_A 4A5W_B 2QQH_A 2RD7_A.
Probab=22.01 E-value=76 Score=25.28 Aligned_cols=29 Identities=17% Similarity=0.393 Sum_probs=18.2
Q ss_pred EecCCCCCCHHH---HHHHhhcCCCeeEEEEc
Q 025549 20 VLNITFRTTADD---LFPLFEKYGKVVDVFIP 48 (251)
Q Consensus 20 V~nLp~~~t~~~---L~~~f~~~G~i~~v~i~ 48 (251)
|.+||...+..+ +.+||..||...-..+.
T Consensus 53 l~~L~~~~~~~~~~~y~~f~~~yGTH~v~~~~ 84 (212)
T PF01823_consen 53 LNALPAEYNSDNTDEYYRFFDKYGTHYVTSVT 84 (212)
T ss_dssp HHTSHSS--HHHHHHHHHHHHHH-SEEEEEEE
T ss_pred HHhhCcccCccchHHHHHHHHHhCcEEEEEEE
Confidence 456888777777 77899999975444333
No 396
>PRK10162 acetyl esterase; Provisional
Probab=21.93 E-value=2.5e+02 Score=24.24 Aligned_cols=56 Identities=13% Similarity=0.059 Sum_probs=32.5
Q ss_pred cEEEEecCCCCCCH-HHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe-cHHHHHHHHhhh
Q 025549 16 YSLLVLNITFRTTA-DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK-YADEAQKAVDRL 77 (251)
Q Consensus 16 ~~l~V~nLp~~~t~-~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~-~~~~A~~Ai~~l 77 (251)
..|+++....-..+ ..+.+.|.+.|.-..+.+..+. ..+|+.|. ..+.|+.|+..+
T Consensus 251 ~~i~~g~~D~L~de~~~~~~~L~~aGv~v~~~~~~g~------~H~f~~~~~~~~~a~~~~~~~ 308 (318)
T PRK10162 251 CFIAGAEFDPLLDDSRLLYQTLAAHQQPCEFKLYPGT------LHAFLHYSRMMDTADDALRDG 308 (318)
T ss_pred eEEEecCCCcCcChHHHHHHHHHHcCCCEEEEEECCC------ceehhhccCchHHHHHHHHHH
Confidence 34555555554443 4567777888855555444332 45777775 456677776643
No 397
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=21.91 E-value=2.6e+02 Score=21.12 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=32.1
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCC
Q 025549 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (251)
..|-||+ ..+|++|+.++...-..++.+. + -+| +-+.+++++++..|..
T Consensus 75 W~lalGd--~~Ls~eEf~~L~~~~~~LV~~r---g---------~WV-~ld~~~l~~~~~~~~~ 123 (141)
T PF12419_consen 75 WELALGD--EELSEEEFEQLVEQKRPLVRFR---G---------RWV-ELDPEELRRALAFLEK 123 (141)
T ss_pred EEEEECC--EECCHHHHHHHHHcCCCeEEEC---C---------EEE-EECHHHHHHHHHHHHh
Confidence 4555655 4578999999998887776652 1 233 3356677777776654
No 398
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=21.88 E-value=81 Score=27.46 Aligned_cols=25 Identities=4% Similarity=0.094 Sum_probs=19.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcC
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKY 39 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~ 39 (251)
+....+-.||.++++++|.+++.++
T Consensus 68 Gi~~~~~~l~~~~s~~el~~~I~~l 92 (299)
T PLN02516 68 GIKSFDVDLPENISEAELISKVHEL 92 (299)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3455566789999999998888776
No 399
>COG4274 Uncharacterized conserved protein [Function unknown]
Probab=21.74 E-value=3.1e+02 Score=19.69 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=23.7
Q ss_pred HHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHH
Q 025549 30 DDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAV 74 (251)
Q Consensus 30 ~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai 74 (251)
+.++.+|+.+| .++.+.+.....+ -.+.+|-.+...+..+.
T Consensus 33 ~av~~~les~G~k~~~~y~T~GeYD----~V~i~EapDda~~~~~~ 74 (104)
T COG4274 33 AAVRALLESMGGKVKEQYWTLGEYD----VVAIVEAPDDAVATRFS 74 (104)
T ss_pred HHHHHHHHHcCcEEEEEEEeecccc----EEEEEecCCHHHHHHHH
Confidence 56888999987 5666666543211 23455555555544443
No 400
>PRK09213 pur operon repressor; Provisional
Probab=21.62 E-value=1.9e+02 Score=24.80 Aligned_cols=42 Identities=26% Similarity=0.348 Sum_probs=30.1
Q ss_pred HHHHHHhhcCC--CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025549 30 DDLFPLFEKYG--KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 30 ~~L~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
.-|++.|+++| .|+.+ .|..-|.-||-+...++|+..++.|.
T Consensus 45 ~i~~~~~~~~~~g~~~t~-------~ga~ggv~~~p~~~~~~a~~~~~~L~ 88 (271)
T PRK09213 45 VIIKETFEKQGIGTLETV-------PGAAGGVKYIPSISEEEAREFVEELC 88 (271)
T ss_pred HHHHHHHHhcCCceEEEe-------CCCCCCeEEEcCCCHHHHHHHHHHHH
Confidence 34788998765 44443 34444888999999999998887664
No 401
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=21.50 E-value=66 Score=28.31 Aligned_cols=9 Identities=44% Similarity=1.165 Sum_probs=5.2
Q ss_pred ceEEEEEEe
Q 025549 57 RGFAFVRYK 65 (251)
Q Consensus 57 ~g~afV~f~ 65 (251)
.||.||.|.
T Consensus 160 lGFmYiRYt 168 (453)
T KOG2888|consen 160 LGFMYIRYT 168 (453)
T ss_pred heeeEEeec
Confidence 356666664
No 402
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=21.08 E-value=38 Score=22.30 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=5.3
Q ss_pred eEEEEEEecH
Q 025549 58 GFAFVRYKYA 67 (251)
Q Consensus 58 g~afV~f~~~ 67 (251)
|+||+++.+.
T Consensus 17 g~~~~~L~D~ 26 (78)
T cd04489 17 GHLYFTLKDE 26 (78)
T ss_pred cEEEEEEEeC
Confidence 3555555544
No 403
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.05 E-value=79 Score=20.76 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=12.9
Q ss_pred CHHHHHHHhhcCCCeeE
Q 025549 28 TADDLFPLFEKYGKVVD 44 (251)
Q Consensus 28 t~~~L~~~f~~~G~i~~ 44 (251)
|.-||++++..||-|+.
T Consensus 3 tfYDVqQlLK~~G~ivy 19 (68)
T COG4483 3 TFYDVQQLLKKFGIIVY 19 (68)
T ss_pred cHHHHHHHHHHCCeeee
Confidence 45688999999986544
No 404
>PF05606 DUF777: Borrelia burgdorferi protein of unknown function (DUF777); InterPro: IPR008495 This family consists of several hypothetical proteins of unknown function, found in Borrelia burgdorferi and Borrelia garinii.
Probab=21.01 E-value=1.4e+02 Score=23.58 Aligned_cols=64 Identities=9% Similarity=0.145 Sum_probs=32.1
Q ss_pred CcEEEEec--CC-CCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEE-EEEEecHHHHHHHHhhhC
Q 025549 15 TYSLLVLN--IT-FRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFA-FVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 15 ~~~l~V~n--Lp-~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~a-fV~f~~~~~A~~Ai~~l~ 78 (251)
.+.||.++ |- ..++.+||+.++-.-=-|+.+-+++.-......|.. .-+|++.+--.+.|..++
T Consensus 4 ~Y~iyr~~~~l~G~al~~ed~K~~iy~NiFI~rIG~iK~F~~~tQe~iVti~e~e~LeI~T~nISN~~ 71 (181)
T PF05606_consen 4 DYEIYRMNQRLYGSALAQEDIKNWIYSNIFICRIGTIKSFKFQTQEGIVTIPEYEDLEIHTKNISNIN 71 (181)
T ss_pred chheeeccCcccccchhHHHHHHHHhhcEEEEEEeeeeecccccceEEEEeecccCceEEeeecccce
Confidence 44455544 44 467889999988543334444444332222222332 335666555455554433
No 405
>PF02946 GTF2I: GTF2I-like repeat; InterPro: IPR004212 This region of sequence similarity is found up to six times in a variety of proteins including general transcription factor II-I (GTF2I). It has been suggested that this may be a DNA binding domain [, ].; PDB: 2E3L_A 2D99_A 2DN4_A 2D9B_A 2EJE_A 1Q60_A 2DZR_A 2DN5_A 2DZQ_A 2ED2_A.
Probab=21.01 E-value=1.4e+02 Score=20.34 Aligned_cols=30 Identities=13% Similarity=0.078 Sum_probs=17.5
Q ss_pred cEEEEecCCCCCC--------HHHHHHHhhcCCCeeEE
Q 025549 16 YSLLVLNITFRTT--------ADDLFPLFEKYGKVVDV 45 (251)
Q Consensus 16 ~~l~V~nLp~~~t--------~~~L~~~f~~~G~i~~v 45 (251)
..|+|.|||.++. ...|+.+++.-..|.++
T Consensus 35 ~~v~V~GLPegi~fr~P~~Y~i~~L~~IL~~~~~I~Fv 72 (76)
T PF02946_consen 35 EAVYVQGLPEGIPFRRPSNYGIPRLEKILEASSRIRFV 72 (76)
T ss_dssp TTEEEES--TT--SS-TTTS-HHHHHHHHHTTTT-EEE
T ss_pred CcEEEEeCCCCCcCCCCCcCCHHHHHHHHHccCCcEEE
Confidence 3599999987763 35677777766666554
No 406
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=20.96 E-value=2.5e+02 Score=25.20 Aligned_cols=77 Identities=9% Similarity=0.135 Sum_probs=35.6
Q ss_pred cEEEEecCCCCCC--HHHHHHHh----h-cCC--------CeeEEEEccCCC--CCCcceEEEEEE---ecHHHHHHHHh
Q 025549 16 YSLLVLNITFRTT--ADDLFPLF----E-KYG--------KVVDVFIPRDRR--TGDSRGFAFVRY---KYADEAQKAVD 75 (251)
Q Consensus 16 ~~l~V~nLp~~~t--~~~L~~~f----~-~~G--------~i~~v~i~~~~~--~g~~~g~afV~f---~~~~~A~~Ai~ 75 (251)
..|.|-|||.... ...+..|| . .|. .|..+.-...+. .+......+|.| .+.+....|..
T Consensus 191 nNiRIiGiPEg~e~~~k~~~~~l~~ii~e~~p~L~~e~~i~IerahR~~~~~~~~~~~PR~iIvKfl~f~~KE~IL~aAR 270 (370)
T PF02994_consen 191 NNIRIIGIPEGEEEEGKGPENFLEEIIPENFPNLPKETDIEIERAHRSPRPKPPKGQRPRPIIVKFLRFQDKEKILKAAR 270 (370)
T ss_dssp TEEEEES----TT--HHHHHHHHHHHHHHH-CHHHHHT---EEEEEEESSSS-TTSSS--EEEEEESSHHHHHHHHHHHH
T ss_pred CceeEEecCCCccccccCHHHHHHHHHHHhCcCcccccchhhhhhhcccCCCCCccCCcCeEEEEecCcccHHHHHHHHH
Confidence 4699999998753 22333333 2 232 344443332221 122223344455 45555555555
Q ss_pred hhCCCccCCceEEEEec
Q 025549 76 RLDGRVVDGREITVQFA 92 (251)
Q Consensus 76 ~l~g~~i~g~~l~v~~a 92 (251)
.+....|.|.+|.|...
T Consensus 271 ~~~~~~~~g~~I~if~D 287 (370)
T PF02994_consen 271 EKGQLTYKGKRIRIFPD 287 (370)
T ss_dssp HHS-EEETTEEEEEECT
T ss_pred hcCceeeCCCceEEeCC
Confidence 56667889999988644
No 407
>PHA03075 glutaredoxin-like protein; Provisional
Probab=20.95 E-value=1.6e+02 Score=21.88 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=19.0
Q ss_pred HHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe
Q 025549 30 DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK 65 (251)
Q Consensus 30 ~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 65 (251)
.-|.++|..+|.-.-+.+..++.+| ..|||.|.
T Consensus 57 ~lInn~~~~lgne~v~lfKydp~t~---qmA~V~i~ 89 (123)
T PHA03075 57 TLINNFFKHLGNEYVSLFKYDPETK---QMAFVDIS 89 (123)
T ss_pred ehHHHHHHhhcccEEEEEEEcCCCC---cEEEEehh
Confidence 4466777777743333444555555 56777664
No 408
>PF14268 YoaP: YoaP-like
Probab=20.94 E-value=71 Score=19.21 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=23.7
Q ss_pred EEEEEecHHHHHHHHhhhCCC--ccCCceEEEEec
Q 025549 60 AFVRYKYADEAQKAVDRLDGR--VVDGREITVQFA 92 (251)
Q Consensus 60 afV~f~~~~~A~~Ai~~l~g~--~i~g~~l~v~~a 92 (251)
-+|.+++.+.|+.|---++.. .++|.-|.+++.
T Consensus 3 ~~i~i~t~e~Aq~~P~pft~yalFYnGkfiT~eil 37 (44)
T PF14268_consen 3 KLIKIDTLEKAQNAPCPFTTYALFYNGKFITNEIL 37 (44)
T ss_pred EEEEeccHHHHhcCCCceeEEEEEECCEEEEeecc
Confidence 478888888888876555544 347888887764
No 409
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=20.94 E-value=1.2e+02 Score=27.11 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=32.3
Q ss_pred EEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHh
Q 025549 18 LLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 75 (251)
|++.....+.-..+|+.+..-|| +|....- .....-|-+|+|.+.+.|...|.
T Consensus 5 l~~~q~hl~Fr~pE~eala~lF~~~i~~sq~-----~~t~~PF~iv~~~s~~~Ar~~~k 58 (421)
T KOG2671|consen 5 LIFAQSHLDFRLPELEALASLFGLQIDESQK-----LHTTSPFFIVEFESEEIARNLIK 58 (421)
T ss_pred EEEehhhhccchHHHHHHHHHHhhhhhhhhh-----hcCCCceEEEEeCchHHHHHHHH
Confidence 44444455556667777777776 3333221 11122689999999999987543
No 410
>PF13037 DUF3898: Domain of unknown function (DUF3898)
Probab=20.89 E-value=56 Score=22.73 Aligned_cols=51 Identities=16% Similarity=0.373 Sum_probs=32.1
Q ss_pred CCHHHHHHHhhcCCCeeE--------EEEccCCCCCCcceEEEEEEecHHHHHHHHhhh
Q 025549 27 TTADDLFPLFEKYGKVVD--------VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (251)
Q Consensus 27 ~t~~~L~~~f~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (251)
+..-+|+.++.-||.-.. |.|+....-..-+|+.=|+|-.+++.+..++.+
T Consensus 31 Ld~~~Vk~lLaDfG~~iHiAKv~~RYv~liEgd~~~FEKG~SPVEflkP~~l~~V~eri 89 (91)
T PF13037_consen 31 LDHTTVKGLLADFGETIHIAKVNDRYVLLIEGDSLQFEKGFSPVEFLKPEDLQEVIERI 89 (91)
T ss_pred cCceehhHHHHhhccceeEEEECCEEEEEEEcceEEEccCCCceeeeCchhHHHHHHHh
Confidence 345578889999985332 223322212223577788888888888877754
No 411
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=20.88 E-value=1.2e+02 Score=21.15 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=21.0
Q ss_pred CeeEEEEccCCCCCCcceEEEEEEecH
Q 025549 41 KVVDVFIPRDRRTGDSRGFAFVRYKYA 67 (251)
Q Consensus 41 ~i~~v~i~~~~~~g~~~g~afV~f~~~ 67 (251)
+|+.|.|..-...|..+.|+-|+|.+.
T Consensus 2 ~iTdVRirkv~~dgrmkA~vsvT~D~e 28 (95)
T COG2088 2 EITDVRIRKVDTDGRMKAYVSVTLDNE 28 (95)
T ss_pred cceeEEEEEecCCCcEEEEEEEEecce
Confidence 467787777666788888999998864
No 412
>PRK10280 dipeptidyl carboxypeptidase II; Provisional
Probab=20.85 E-value=83 Score=30.77 Aligned_cols=51 Identities=20% Similarity=0.228 Sum_probs=32.9
Q ss_pred CcEEEEecCCCC-------CCHHHHHHHhhcCCCe-----eEEEEccCCCCCCcceEEEEEEecH
Q 025549 15 TYSLLVLNITFR-------TTADDLFPLFEKYGKV-----VDVFIPRDRRTGDSRGFAFVRYKYA 67 (251)
Q Consensus 15 ~~~l~V~nLp~~-------~t~~~L~~~f~~~G~i-----~~v~i~~~~~~g~~~g~afV~f~~~ 67 (251)
..++.|+||+.- ++..+|..+|..||-. ..+.+ ....|.....-||||.+.
T Consensus 441 Pv~~lvcNf~~p~~~~p~LL~~~eV~TlFHEfGHalH~lls~~~y--~~~sGt~v~~DfVE~PSq 503 (681)
T PRK10280 441 PVIYNVCNYQKPAAGQPALLLWDDVITLFHEFGHTLHGLFARQRY--ATLSGTNTPRDFVEFPSQ 503 (681)
T ss_pred CeEEEECCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHhCCCc--cccCCCCCCcchhcCcHH
Confidence 345667888642 5889999999999842 22222 223555556778888643
No 413
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=20.82 E-value=2.1e+02 Score=26.60 Aligned_cols=59 Identities=22% Similarity=0.396 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025549 25 FRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 25 ~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
...++.+|.++|.+-+.-.++.++.. +..+.||-+|.|... +||..+.|..|.|.+.+.
T Consensus 49 ~a~~~Kei~~~l~~~n~~~nlk~~~~--~td~~G~t~vr~~q~---------vnGvpv~g~~v~vh~dk~ 107 (507)
T COG3227 49 SAPNEKEILQFLENVNADNNLKAIST--DTDPNGFTHVRYQQV---------VNGVPVKGSEVIVHLDKN 107 (507)
T ss_pred ccCChHHHHHHHhcCChhhceeeEEe--eccCCCceEEEEEee---------ECCeeccCceEEEEECCC
Confidence 45678888888885543333333322 122348889988753 789999999888887754
No 414
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=20.76 E-value=3.2e+02 Score=24.09 Aligned_cols=73 Identities=15% Similarity=0.139 Sum_probs=43.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCC--------------cceEEEEEEecHHHHHHHHhhhC
Q 025549 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGD--------------SRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~--------------~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
.++--||+.|+--.+.+..|.++ ...|.|.-|-++-...... ..--+|+.+...+.-.++|+.|.
T Consensus 221 P~GIDiYfeNVGG~~lDavl~nM-~~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d~~~k~ld~l~ 299 (343)
T KOG1196|consen 221 PEGIDIYFENVGGKMLDAVLLNM-NLHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLDKYPKFLDFLL 299 (343)
T ss_pred CCcceEEEeccCcHHHHHHHHhh-hhccceEeeeeehhccccCCccccchhhheeeeEEeeeEEeechhhhhHHHHHHHH
Confidence 34566999999988877766654 5677777765553211111 11135666666677778877665
Q ss_pred CCccCCce
Q 025549 79 GRVVDGRE 86 (251)
Q Consensus 79 g~~i~g~~ 86 (251)
...-.|+.
T Consensus 300 ~~ikegKI 307 (343)
T KOG1196|consen 300 PYIKEGKI 307 (343)
T ss_pred HHHhcCce
Confidence 44334443
No 415
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=20.72 E-value=2.4e+02 Score=19.49 Aligned_cols=15 Identities=7% Similarity=0.208 Sum_probs=7.2
Q ss_pred CCCCCCHHHHHHHhh
Q 025549 23 ITFRTTADDLFPLFE 37 (251)
Q Consensus 23 Lp~~~t~~~L~~~f~ 37 (251)
+|.+.+-.+|..++.
T Consensus 22 v~~~~tv~~~~~~lr 36 (87)
T cd01612 22 ISATQSFQAVIDFLR 36 (87)
T ss_pred eCCCCCHHHHHHHHH
Confidence 344455555444443
No 416
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=20.72 E-value=3.6e+02 Score=25.37 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=38.8
Q ss_pred CCCcEEEEec---CCCCCCHHHHHHHhh----cCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCc
Q 025549 13 RDTYSLLVLN---ITFRTTADDLFPLFE----KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (251)
Q Consensus 13 ~~~~~l~V~n---Lp~~~t~~~L~~~f~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~ 85 (251)
...-.|.|.| +|...+++++.++.. .||+++--.++.-- + .++|+=..+.-+..|-+.|++ .|.|+
T Consensus 87 ~~APRVliaNs~lVp~wa~~e~f~~l~~~Gl~mYGQMTAGsw~YIG----~--QGIvqGTyeT~~~aark~f~~-~L~G~ 159 (545)
T TIGR01228 87 ENAPRVLIANSNLVPHWADWEHFHELEAKGLMMYGQMTAGSWIYIG----T--QGILQGTYETFAELARQHFGG-SLKGK 159 (545)
T ss_pred CCCCeEEEEcCccccCCCCHHHHHHHHHcccccccCccccceEEEc----C--cceeecHHHHHHHHHHHhcCC-CCcee
Confidence 3455677876 677889998888774 57877543222211 1 144444444456667777765 45554
No 417
>PF04940 BLUF: Sensors of blue-light using FAD; InterPro: IPR007024 An FAD-binding domain, BLUF, exemplified by the N terminus of the AppA protein, (Q53119 from SWISSPROT), from Rhodobacter sphaeroides, is present in various proteins, primarily from Bacteria. The BLUF domain is involved in sensing blue-light (and possibly redox) using FAD and is similar to the flavin-binding PAS domains and cryptochromes. The predicted secondary structure reveals that the BLUF domain is a novel FAD-binding fold [].; PDB: 2IYG_A 2IYI_B 1X0P_A 2HFN_G 3MZI_A 2HFO_E 3GFZ_A 3GG1_B 2KB2_A 3GFY_A ....
Probab=20.71 E-value=2.2e+02 Score=19.91 Aligned_cols=35 Identities=9% Similarity=0.114 Sum_probs=24.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcC------CCeeEEEEccC
Q 025549 16 YSLLVLNITFRTTADDLFPLFEKY------GKVVDVFIPRD 50 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~------G~i~~v~i~~~ 50 (251)
..|||.-+...++.++|.+++... -.|+.+.+..+
T Consensus 3 ~l~Y~S~~~~~~~~~~~~~Il~~s~~~N~~~~iTG~Ll~~~ 43 (93)
T PF04940_consen 3 RLIYVSTASEDLSPEDLADILRSSRRNNRRHGITGFLLYDG 43 (93)
T ss_dssp EEEEEEEE-TTS-HHHHHHHHHHHHHHHHHHTEEEEEEEET
T ss_pred EEEEEEccCCCCCHHHHHHHHHHHHHhhhhcCCEEEEEEeC
Confidence 368899888899999999998643 24777777654
No 418
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=20.58 E-value=3.6e+02 Score=19.90 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=36.8
Q ss_pred HHHHHhhcCC--CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhh-CCCccCCceEEEEeccC
Q 025549 31 DLFPLFEKYG--KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL-DGRVVDGREITVQFAKY 94 (251)
Q Consensus 31 ~L~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l-~g~~i~g~~l~v~~a~~ 94 (251)
.+.+.+.+.| .|+.|++. .|-...-+++..+-|++.+ .|+.+.|..|.|+..+.
T Consensus 13 ~i~~~A~~~~a~~V~~V~l~----------IG~ls~v~~~~l~FaFev~~egT~aega~l~Ie~~p~ 69 (115)
T COG0375 13 LIEEQAEKHGAKRVTAVWLE----------IGELSCVEPEALRFAFEVVAEGTIAEGAELHIEEEPA 69 (115)
T ss_pred HHHHHHHHcCCceEEEEEEE----------EcceeccCHHHHHHHHHHHhccCcccCCEEEEEEecc
Confidence 3455566665 57777774 3555566777778887765 46677899999887764
No 419
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=20.48 E-value=3.3e+02 Score=19.41 Aligned_cols=53 Identities=13% Similarity=0.245 Sum_probs=27.2
Q ss_pred CCCCCCHHHHHHHhhcC--------CCeeEEEEccCC-----CCCCcce-EEEEEEecHHHHHHHHh
Q 025549 23 ITFRTTADDLFPLFEKY--------GKVVDVFIPRDR-----RTGDSRG-FAFVRYKYADEAQKAVD 75 (251)
Q Consensus 23 Lp~~~t~~~L~~~f~~~--------G~i~~v~i~~~~-----~~g~~~g-~afV~f~~~~~A~~Ai~ 75 (251)
|.+.++++++.+++..+ |.|..+..+-.. ..+...| |.++.|.....+...|+
T Consensus 10 l~~~~~~~~~~~~~~~~~~~i~~~gg~i~~~~~~G~r~LAY~I~k~~~G~Y~~~~f~~~~~~i~el~ 76 (108)
T PRK00453 10 LRPDLSEEQVKALVERFKGVITENGGTIHKVEDWGRRRLAYPINKLRKGHYVLLNFEAPPAAIAELE 76 (108)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEecccccccceEcCCCcEEEEEEEEEEeCHHHHHHHH
Confidence 45566666665555433 455555432111 1122334 56778886666666555
No 420
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=20.46 E-value=2e+02 Score=25.25 Aligned_cols=26 Identities=12% Similarity=0.163 Sum_probs=18.3
Q ss_pred CCCCCCHHHHHHHhh-cCCCeeEEEEc
Q 025549 23 ITFRTTADDLFPLFE-KYGKVVDVFIP 48 (251)
Q Consensus 23 Lp~~~t~~~L~~~f~-~~G~i~~v~i~ 48 (251)
|...++.++|.++|. .|..-.+|.|.
T Consensus 220 ~~~~~~~~~~~~~~~~~Y~~epfVrv~ 246 (310)
T TIGR01851 220 LASKVSPADIHAALADYYQGEQFVRVA 246 (310)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCcEEEe
Confidence 466789999999997 45554555554
No 421
>cd08041 OBF_kDNA_ligase_like The Oligonucleotide/oligosaccharide binding (OB)-fold domain of kDNA ligase-like ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriohages, eukarya, archaea and bacteria. The mitochondrial DNA of parasitic protozoan is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-de
Probab=20.45 E-value=2e+02 Score=19.15 Aligned_cols=27 Identities=7% Similarity=-0.054 Sum_probs=19.2
Q ss_pred cCCCCCCHHHHHHHhhcCCCeeEEEEcc
Q 025549 22 NITFRTTADDLFPLFEKYGKVVDVFIPR 49 (251)
Q Consensus 22 nLp~~~t~~~L~~~f~~~G~i~~v~i~~ 49 (251)
++-..++++++++++ .+|.|..|.+..
T Consensus 35 ~vgtG~t~~~r~~~~-~~g~v~~V~y~e 61 (77)
T cd08041 35 KIGSGFSDEQRRNPP-PIGSIITYKYQG 61 (77)
T ss_pred EEcCCCCHHHHhcCC-CCCCEEEEEEEe
Confidence 455667888888776 478888777654
No 422
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=20.42 E-value=3e+02 Score=22.96 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=21.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCC
Q 025549 16 YSLLVLNITFRTTADDLFPLFEKYGK 41 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~ 41 (251)
.+.||+.|..+..-+.|.+.|.++|.
T Consensus 52 ~~~~~~~vG~D~~g~~i~~~l~~~gi 77 (292)
T cd01174 52 RVAMIGAVGDDAFGDELLENLREEGI 77 (292)
T ss_pred ceEEEEEEcCCccHHHHHHHHHHcCC
Confidence 45678888887778889999999884
No 423
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=20.32 E-value=3.1e+02 Score=23.32 Aligned_cols=63 Identities=24% Similarity=0.217 Sum_probs=31.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEE--ecHHHHHHHHhhhCC
Q 025549 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRY--KYADEAQKAVDRLDG 79 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f--~~~~~A~~Ai~~l~g 79 (251)
..+|+|.+++...-...|.+++..+..|.--.+..+. ..... ..-|.. .+.+.|.+++..+.+
T Consensus 180 ~~~~~~~gi~ES~la~~L~~i~~~~~~~~i~s~p~~~-~~~~~-~~~i~~~~~~~~~~~~~~~~~~~ 244 (255)
T COG1058 180 SRVLRVFGIGESSLAPTLKDLQDEQPNVTIASYPKDG-EVRLR-ELVIRAEARDEEEADALLRWLEG 244 (255)
T ss_pred EEEEEEcCCChHHHHHHHHHHHhcCCCCEEEecCCCC-ceecc-ceEEEEecCCHHHHHHHHHHHHH
Confidence 4456666777666666677777666444322222211 00000 111444 567777777765543
No 424
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=20.25 E-value=2.2e+02 Score=26.36 Aligned_cols=59 Identities=14% Similarity=0.267 Sum_probs=32.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhhc---CCCeeEEEEccCCCCCCcceEEEE-EEecHHHHHHHHh
Q 025549 16 YSLLVLNITFRTTADDLFPLFEK---YGKVVDVFIPRDRRTGDSRGFAFV-RYKYADEAQKAVD 75 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~---~G~i~~v~i~~~~~~g~~~g~afV-~f~~~~~A~~Ai~ 75 (251)
.+|.|.-||+.++.+.|.+.+.. -+.|..+.-..+.... ..|+.|| ++.....++..+.
T Consensus 233 ~~ivItElP~~~~~~~~~e~I~~lv~~~ki~~i~~~~des~~-~~~vrivI~lk~~~~~~~~~~ 295 (445)
T smart00434 233 NTIVITELPYQVNKAKLIEKIAELVKDKKIEGIIDVRDESHD-RTGVRIVIELKRGAMAEVVLN 295 (445)
T ss_pred ceEEEEeCCCcccHHHHHHHHHHHHhcCCCCcceehhhccCC-CCceEEEEEECCCcCHHHHHH
Confidence 57999999999998888876543 3444444333332111 1255554 4444434444433
No 425
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.23 E-value=80 Score=25.81 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=20.2
Q ss_pred EecCCCCCCHHHHHHHhhcCCCeeEEEEccCC
Q 025549 20 VLNITFRTTADDLFPLFEKYGKVVDVFIPRDR 51 (251)
Q Consensus 20 V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~ 51 (251)
|-.|.++++.++|+..|.+. .|.|..++
T Consensus 58 VLqIdpev~~edikkryRkl----SilVHPDK 85 (250)
T KOG1150|consen 58 VLQIDPEVTDEDIKKRYRKL----SILVHPDK 85 (250)
T ss_pred HHhcCCCCCHHHHHHHHHhh----heeecCCC
Confidence 34577889999999999885 44455554
No 426
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.22 E-value=1.1e+02 Score=23.34 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=28.4
Q ss_pred CCCCCCHHHHHHHhhcCC------CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCC
Q 025549 23 ITFRTTADDLFPLFEKYG------KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (251)
Q Consensus 23 Lp~~~t~~~L~~~f~~~G------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (251)
|+...+.++|++|...|. .|..|.|..-...|+.-|- -|.|. .+.||+.+.+
T Consensus 37 l~~~~~~~~vr~Fq~~f~kl~~dy~Vd~VvIk~R~~KGKfAGg-a~~FK----mEaaIQL~~~ 94 (138)
T PF11215_consen 37 LSDDNSTEEVRKFQFTFAKLMEDYKVDKVVIKERATKGKFAGG-AVGFK----MEAAIQLIDD 94 (138)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHcCCCEEEEEecccCCCccCC-chhHH----HHHHHHhcCC
Confidence 344455555555443332 4777877766666665443 34444 5566665443
No 427
>PLN02936 epsilon-ring hydroxylase
Probab=20.05 E-value=82 Score=29.08 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=29.7
Q ss_pred CCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhh
Q 025549 27 TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (251)
Q Consensus 27 ~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 76 (251)
.....|.+++.+||.|..+.+. +.-+|.+.+.+.++.++..
T Consensus 37 ~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~pe~~~~il~~ 77 (489)
T PLN02936 37 ALFLPLFKWMNEYGPVYRLAAG---------PRNFVVVSDPAIAKHVLRN 77 (489)
T ss_pred HHHHHHHHHHHHcCCEEEEccC---------CccEEEEcCHHHHHHHHHh
Confidence 3456788888999998776542 2256777888888888764
Done!