BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025550
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CN7|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|C Chain C, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|D Chain D, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN9|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
pdb|3CN9|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
Length = 226
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 113/217 (52%), Gaps = 17/217 (7%)
Query: 36 PMARNFILWLHGLG----DSGPANEPIKTLFTSPEFKLTKWSFPSAPNNPVTCNYGAVMP 91
P A I+WLHGLG D P E ++ + S T++ P AP+ VT N G VMP
Sbjct: 21 PNADACIIWLHGLGADRTDFKPVAEALQMVLPS-----TRFILPQAPSQAVTVNGGWVMP 75
Query: 92 SWFDIHEIPVTASSPKDESSLLKAVRNVHAMIDKEVAAGIDPNNVFVCGFSQGGALTLAS 151
SW+DI + + + DE L + V A+ID++ A GI + + GFSQGGA+ L +
Sbjct: 76 SWYDI--LAFSPARAIDEDQLNASADQVIALIDEQRAKGIAAERIILAGFSQGGAVVLHT 133
Query: 152 VL-LYPRKLGGGAIFSGWVP-FNASLIDQFTSDAKKTPILWSHGMADRTVLFEAGQAGPP 209
Y + LGG S + P F+ +D+ K+ P+L HG D V G+A
Sbjct: 134 AFRRYAQPLGGVLALSTYAPTFDDLALDERH---KRIPVLHLHGSQDDVVDPALGRAAHD 190
Query: 210 FLEQAGISCEFKAYPGLGHSISNEELRNLESWIKTRM 246
L+ G+ + YP +GH +S EE+ ++ +W++ R+
Sbjct: 191 ALQAQGVEVGWHDYP-MGHEVSLEEIHDIGAWLRKRL 226
>pdb|1FJ2|A Chain A, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
pdb|1FJ2|B Chain B, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
Length = 232
Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 107/215 (49%), Gaps = 15/215 (6%)
Query: 36 PMARNF---ILWLHGLGDSGPANEPIKTLFTSPEFKLTKWSFPSAPNNPVTCNYGAVMPS 92
P AR +++LHGLGD+G F K+ P AP PVT N MPS
Sbjct: 17 PAARKATAAVIFLHGLGDTG---HGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPS 73
Query: 93 WFDIHEIPVTASSPKDESSLLKAVRNVHAMIDKEVAAGIDPNNVFVCGFSQGGALTLASV 152
WFDI I ++ S +DES + +A N+ A+ID+EV GI N + + GFSQGGAL+L +
Sbjct: 74 WFDI--IGLSPDSQEDESGIKQAAENIKALIDQEVKNGIPSNRIILGGFSQGGALSLYTA 131
Query: 153 LLYPRKLGGGAIFSGWVPFNASLIDQFTSDAKKT-PILWSHGMADRTVLFEAG----QAG 207
L +KL G S W+P AS A + IL HG D V G +
Sbjct: 132 LTTQQKLAGVTALSCWLPLRASFPQGPIGGANRDISILQCHGDCDPLVPLMFGSLTVEKL 191
Query: 208 PPFLEQAGISCEFKAYPGLGHSISNEELRNLESWI 242
+ A ++ FK Y G+ HS +E+ +++ +I
Sbjct: 192 KTLVNPANVT--FKTYEGMMHSSCQQEMMDVKQFI 224
>pdb|4F21|A Chain A, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|B Chain B, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|C Chain C, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|D Chain D, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|E Chain E, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|F Chain F, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|G Chain G, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|H Chain H, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
Length = 246
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 103/206 (50%), Gaps = 2/206 (0%)
Query: 38 ARNFILWLHGLGDSGPANEPIKTLFTSPEFKLTKWSFPSAPNNPVTCNYGAVMPSWFDIH 97
AR ++WLHGLG G I F ++ FP A PVT N G M +W+DI
Sbjct: 36 ARFCVIWLHGLGADGHDFVDIVNYF-DVSLDEIRFIFPHADIIPVTINMGMQMRAWYDIK 94
Query: 98 EIPVTA-SSPKDESSLLKAVRNVHAMIDKEVAAGIDPNNVFVCGFSQGGALTLASVLLYP 156
+ + + D + ++ V+ +ID +V GI N+ + GFSQGG + + +
Sbjct: 95 SLDANSLNRVVDVEGINSSIAKVNKLIDSQVNQGIASENIILAGFSQGGIIATYTAITSQ 154
Query: 157 RKLGGGAIFSGWVPFNASLIDQFTSDAKKTPILWSHGMADRTVLFEAGQAGPPFLEQAGI 216
RKLGG S ++P + + TS K PIL HG D+ + G L+ +G
Sbjct: 155 RKLGGIMALSTYLPAWDNFKGKITSINKGLPILVCHGTDDQVLPEVLGHDLSDKLKVSGF 214
Query: 217 SCEFKAYPGLGHSISNEELRNLESWI 242
+ E+K Y G+ HS+ EE++++ ++I
Sbjct: 215 ANEYKHYVGMQHSVCMEEIKDISNFI 240
>pdb|1AUO|A Chain A, Carboxylesterase From Pseudomonas Fluorescens
pdb|1AUO|B Chain B, Carboxylesterase From Pseudomonas Fluorescens
pdb|1AUR|A Chain A, Pmsf-Inhibited Carboxylesterase From Pseudomonas
Fluorescens
pdb|1AUR|B Chain B, Pmsf-Inhibited Carboxylesterase From Pseudomonas
Fluorescens
Length = 218
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 109/212 (51%), Gaps = 18/212 (8%)
Query: 42 ILWLHGLG----DSGPANEPIK-TLFTSPEFKLTKWSFPSAPNNPVTCNYGAVMPSWFDI 96
++WLHGLG D P E ++ +L T T++ P AP PVT N G MPSW+DI
Sbjct: 17 VIWLHGLGADRYDFMPVAEALQESLLT------TRFVLPQAPTRPVTINGGYEMPSWYDI 70
Query: 97 HEIPVTASSPKDESSLLKAVRNVHAMIDKEVAAGIDPNNVFVCGFSQGGALTLASVLL-Y 155
+ S +E L + + V +I+ + GID + +F+ GFSQGGA+ + + +
Sbjct: 71 KAMSPARSISLEE--LEVSAKMVTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTAFINW 128
Query: 156 PRKLGGGAIFSGWVP-FNASLIDQFTSDAKKTPILWSHGMADRTVLFEAGQAGPPFLEQA 214
LGG S + P F L + ++ ++ P L HG D V G++ L+
Sbjct: 129 QGPLGGVIALSTYAPTFGDEL--ELSASQQRIPALCLHGQYDDVVQNAMGRSAFEHLKSR 186
Query: 215 GISCEFKAYPGLGHSISNEELRNLESWIKTRM 246
G++ ++ YP +GH + +E+ ++ +W+ R+
Sbjct: 187 GVTVTWQEYP-MGHEVLPQEIHDIGAWLAARL 217
>pdb|3U0V|A Chain A, Crystal Structure Analysis Of Human Lyplal1
Length = 239
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 5/208 (2%)
Query: 42 ILWLHGLGDSGPANEP-IKTLFTSP-EFKLTKWSFPSAPNNPVTCNYGAVMPSWFDIHEI 99
+++LHG GDSG IK + F+ K +P+AP T G + WFD
Sbjct: 26 LIFLHGSGDSGQGLRMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFD--RF 83
Query: 100 PVTASSPKDESSLLKAVRNVHAMIDKEVAAGIDPNNVFVCGFSQGGALTLASVLLYPRKL 159
+T P+ S+ + + +ID+EV +GI N + + GFS GG + + + +
Sbjct: 84 KITNDCPEHLESIDVMCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAMHLAYRNHQDV 143
Query: 160 GGGAIFSGWVPFNASLIDQFTSDAKKTPILWS-HGMADRTVLFEAGQAGPPFLEQAGISC 218
G S ++ +++ P L+ HG AD VL + L+ G++
Sbjct: 144 AGVFALSSFLNKASAVYQALQKSNGVLPELFQCHGTADELVLHSWAEETNSMLKSLGVTT 203
Query: 219 EFKAYPGLGHSISNEELRNLESWIKTRM 246
+F ++P + H +S EL L+ WI T++
Sbjct: 204 KFHSFPNVYHELSKTELDILKLWILTKL 231
>pdb|4H0C|A Chain A, Crystal Structure Of PhospholipaseCARBOXYLESTERASE FROM
DYADOBACTER Fermentans Dsm 18053
pdb|4H0C|B Chain B, Crystal Structure Of PhospholipaseCARBOXYLESTERASE FROM
DYADOBACTER Fermentans Dsm 18053
Length = 210
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 85/206 (41%), Gaps = 19/206 (9%)
Query: 38 ARNFILWLHGLGDSGPANEPIKTLFTSPEFKLTKWSFPSAPNNPVTCNYGAVMPSWFDIH 97
A+ ++ LHG G + ++ + E + P A NN SW+
Sbjct: 21 AKKAVVXLHGRGGTAADIISLQKVLKLDEXAIYA---PQATNN-----------SWYPYS 66
Query: 98 -EIPVTASSPKDESSLLKAVRNVHAMIDKEVAAGIDPNNVFVCGFSQGGALTLASVLLYP 156
PV + P +S+L V V A I+ A GI ++ GFSQG LTL
Sbjct: 67 FXAPVQQNQPALDSAL-ALVGEVVAEIE---AQGIPAEQIYFAGFSQGACLTLEYTTRNA 122
Query: 157 RKLGGGAIFSGWVPFNASLIDQFTSDAKKTPILWSHGMADRTVLFEAGQAGPPFLEQAGI 216
RK GG F+G + I + D K+TP+ S G D V Q LE
Sbjct: 123 RKYGGIIAFTGGLIGQELAIGNYKGDFKQTPVFISTGNPDPHVPVSRVQESVTILEDXNA 182
Query: 217 SCEFKAYPGLGHSISNEELRNLESWI 242
+ YPG H+IS +E++ + + I
Sbjct: 183 AVSQVVYPGRPHTISGDEIQLVNNTI 208
>pdb|4FTW|A Chain A, Crystal Structure Of A Carboxyl Esterase N110cL145H AT 2.3
ANGSTROM Resolution
Length = 285
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 31/221 (14%)
Query: 38 ARNFILWLHGLGDSGPA----NEPIKTLFTSPEFKLTKWSFPSAPNNPVTCNYGAVMPSW 93
A + +++LHG G G EP+ +P T + P AP C +G W
Sbjct: 65 ATSLVVFLHGYGADGADLLGLAEPL-----APHLPGTAFVAPDAPEPCRACGFGF---QW 116
Query: 94 FDIHEIPVTASSPKDESSLLKAVRNVHAMIDKEVAA-GIDPNNVFVCGFSQGGALTLASV 152
F I + ++ + + A R++ A D+ +A G+ P + + GFSQG T+ ++
Sbjct: 117 FPIPWLDGSSET-AAAEGMAAAARDLDAFHDERLAEEGLPPEALALVGFSQG---TMMAL 172
Query: 153 LLYPRKLGGGAIFSGWVPFNASLI--DQFTSDAK-KTPILWSHGMADRTVLFE----AGQ 205
+ PR+ +G V F+ L+ ++ +A+ K P+L HG AD V F AG+
Sbjct: 173 HVAPRR---AEEIAGIVGFSGRLLAPERLAEEARSKPPVLLVHGDADPVVPFADMSLAGE 229
Query: 206 AGPPFLEQAGISCEFKAYPGLGHSISNEELRNLESWIKTRM 246
A L +AG + G GH I+ + L +++K R+
Sbjct: 230 A----LAEAGFTTYGHVMKGTGHGIAPDGLSVALAFLKERL 266
>pdb|4FHZ|A Chain A, Crystal Structure Of A Carboxyl Esterase At 2.0 Angstrom
Resolution
Length = 285
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 31/221 (14%)
Query: 38 ARNFILWLHGLGDSGPA----NEPIKTLFTSPEFKLTKWSFPSAPNNPVTCNYGAVMPSW 93
A + +++LHG G G EP+ +P T + AP+ P C W
Sbjct: 65 ATSLVVFLHGYGADGADLLGLAEPL-----APHLPGTAFV---APDAPEPCRANGFGFQW 116
Query: 94 FDIHEIPVTASSPKDESSLLKAVRNVHAMIDKEVAA-GIDPNNVFVCGFSQGGALTLASV 152
F I + ++ + + A R++ A +D+ +A G+ P + + GFSQG T+ ++
Sbjct: 117 FPIPWLDGSSET-AAAEGMAAAARDLDAFLDERLAEEGLPPEALALVGFSQG---TMMAL 172
Query: 153 LLYPRKLGGGAIFSGWVPFNASLI--DQFTSDAK-KTPILWSHGMADRTVLFE----AGQ 205
+ PR+ +G V F+ L+ ++ +A+ K P+L HG AD V F AG+
Sbjct: 173 HVAPRR---AEEIAGIVGFSGRLLAPERLAEEARSKPPVLLVHGDADPVVPFADMSLAGE 229
Query: 206 AGPPFLEQAGISCEFKAYPGLGHSISNEELRNLESWIKTRM 246
A L +AG + G GH I+ + L +++K R+
Sbjct: 230 A----LAEAGFTTYGHVMKGTGHGIAPDGLSVALAFLKERL 266
>pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From
Stenotrophomonas Maltophilia
Length = 741
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 21/125 (16%)
Query: 131 IDPNNVFVCGFSQGGALTLASVLLYPRKLG---GGAIFSGWVPFNASLIDQFTS------ 181
+DP + V G+S GG +TL + GA + W +++ +++
Sbjct: 599 VDPARIGVQGWSNGGYMTLMLLAKASDSYACGVAGAPVTDWGLYDSHYTERYMDLPARND 658
Query: 182 ------------DAKKTPILWSHGMADRTVLFEAGQAGPPFLEQAGISCEFKAYPGLGHS 229
+ ++P+L HGMAD VLF + L++ G E YPG H
Sbjct: 659 AGYREARVLTHIEGLRSPLLLIHGMADDNVLFTNSTSLMSALQKRGQPFELMTYPGAKHG 718
Query: 230 ISNEE 234
+S +
Sbjct: 719 LSGAD 723
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 78/215 (36%), Gaps = 28/215 (13%)
Query: 15 SGTIIFILFFWPSSSYSHEQNPMARNFILWLHGLGDSGPAN------EPIKTLFTSPEFK 68
+G I F P + P+ +++LHG G+ G N ++ P ++
Sbjct: 154 TGVEIPYRLFVPKDVNPDRKYPL----VVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQ 209
Query: 69 LTKWSFPSAPNNPVTCNYGAVMPSWFDIHEIPVTASSPKDESSLLKAVRNVHAMIDKEVA 128
+ F AP P ++ + F E P P LL ++ + ++D+
Sbjct: 210 VVHPCFVLAPQCPPNSSWSTL----FTDRENPFNPEKP-----LLAVIKIIRKLLDE--- 257
Query: 129 AGIDPNNVFVCGFSQGGALTLASVLLYPRKLGGGAIFSGWVPFNASLIDQFTSDAKKTPI 188
ID N +++ G S GG T +++ +P +F+ +P K PI
Sbjct: 258 YNIDENRIYITGLSMGGYGTWTAIMEFPE------LFAAAIPICGGGDVSKVERIKDIPI 311
Query: 189 LWSHGMADRTVLFEAGQAGPPFLEQAGISCEFKAY 223
H D V E + L + G + Y
Sbjct: 312 WVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYTEY 346
>pdb|3CXM|A Chain A, Leishmania Naiffi Uracil-Dna Glycosylase In Complex With
5-Bromouracil
Length = 268
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Query: 93 WFDIHEIPVTASSPKDESSLLKAVRNVHAMIDKEVAAGIDPNNVFVCGFSQGGALTL-AS 151
+ D+H+ S E L ++RN++ + ++A P + ++ +S+ G L L A+
Sbjct: 103 YHDLHQAHGLCFSVLPEVPLPPSLRNIYKELTTDIAGFQAPKHGYLQSWSEQGMLMLNAT 162
Query: 152 VLLYPRKLGGGAIFSGWVPFNASLIDQFTSDA--KKTPILWSHGMADRTVLFEAGQ 205
+ + K + SGW F ++I + + +LW + L +A +
Sbjct: 163 LTVEAHKANSHSKTSGWAAFTDAVIQHLSQHHPNRLVFLLWGGYAQQKKRLIDANR 218
>pdb|1JMY|A Chain A, Truncated Recombinant Human Bile Salt Stimulated Lipase
Length = 522
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
Query: 115 AVRNVH---AMIDKEVAA-GIDPNNVFVCGFSQGGA-LTLASVLLYPRKLGGGAIFSGWV 169
+R+ H A + + +AA G DPNN+ + G S GGA ++L ++ Y + L AI V
Sbjct: 163 GLRDQHMAIAWVKRNIAAFGGDPNNITLFGESAGGASVSLQTLSPYNKGLIRRAISQSGV 222
Query: 170 PFNASLIDQFTSDAKKTPILWSHGMADR 197
+ +I +K P+ W+ +A++
Sbjct: 223 ALSPWVI-------QKNPLFWAKKVAEK 243
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 12 VILSGTIIFILFFWPSSSYSHEQNPMARNFILWLHGLGDSGPAN 55
+ SG + F+ F+ P SS+SH+ P R F + GL G N
Sbjct: 129 AVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVN 172
>pdb|1HI8|A Chain A, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
pdb|1HI8|B Chain B, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Length = 664
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 79 NNPVTCNYGAVMPSWFDIHEIPVTASSPKDESSLL----KAVRNVHAMIDKEVAAGIDPN 134
+ P C + + S++ HE + S D++ L +A+ H + + ++P+
Sbjct: 428 DXPSACRF---LDSYWQGHE-EIRQISKSDDAXLGWTKGRALVGGHRLFEXLKEGKVNPS 483
Query: 135 NVFVCGFSQGGALTLASVLLYP-RKLGGGAIFSGWVPFNASLIDQFT 180
+ GGA L +LLY R+ G AIF G + N+ L +QF+
Sbjct: 484 PYXKISYEHGGAF-LGDILLYDSRREPGSAIFVGNI--NSXLNNQFS 527
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 136 VFVCGFSQGGALTLASVLLYPRKLGGGAIFSGWVPFNASL 175
+F+ G S GGALT+ + +P + F+G +P NA+L
Sbjct: 120 LFMTGLSMGGALTVWAAGQFPER------FAGIMPINAAL 153
>pdb|1F6W|A Chain A, Structure Of The Catalytic Domain Of Human Bile Salt
Activated Lipase
Length = 533
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
Query: 115 AVRNVH---AMIDKEVAA-GIDPNNVFVCGFSQGGA-LTLASVLLYPRKLGGGAIFSGWV 169
+R+ H A + + +AA G DP+N+ + G S GGA ++L ++ Y + L AI V
Sbjct: 163 GLRDQHMAIAWVKRNIAAFGGDPDNITLFGESAGGASVSLQTLSPYNKGLIRRAISQSGV 222
Query: 170 PFNASLIDQFTSDAKKTPILWSHGMADR 197
+ +I +K P+ W+ +A++
Sbjct: 223 ALSPWVI-------QKNPLFWAKKVAEK 243
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 136 VFVCGFSQGGALTLASVLLYPRKLGGGAIFSGWVPFNASL 175
+F+ G S GGALT+ + +P + F+G +P NA+L
Sbjct: 122 LFMTGLSMGGALTVWAAGQFPER------FAGIMPINAAL 155
>pdb|2JL9|A Chain A, Structural Explanation For The Role Of Mn In The Activity
Of Phi6 Rna-Dependent Rna Polymerase
pdb|2JL9|B Chain B, Structural Explanation For The Role Of Mn In The Activity
Of Phi6 Rna-Dependent Rna Polymerase
pdb|2JL9|C Chain C, Structural Explanation For The Role Of Mn In The Activity
Of Phi6 Rna-Dependent Rna Polymerase
Length = 665
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 81 PVTCNYGAVMPSWFDIHEIPVTASSPKDESSLL----KAVRNVHAMIDKEVAAGIDPNNV 136
P C + + S++ HE + S D++ L +A+ H + + ++P+
Sbjct: 431 PSACRF---LDSYWQGHE-EIRQISKSDDAMLGWTKGRALVGGHRLFEMLKEGKVNPSPY 486
Query: 137 FVCGFSQGGALTLASVLLYP-RKLGGGAIFSGWVPFNASLIDQFT 180
+ GGA L +LLY R+ G AIF G + N+ L +QF+
Sbjct: 487 MKISYQHGGAF-LGDILLYDSRREPGSAIFVGNI--NSMLNNQFS 528
>pdb|2JLF|A Chain A, Structural Explanation For The Role Of Mn In The Activity
Of Phi6 Rna-dependent Rna Polymerase
pdb|2JLF|B Chain B, Structural Explanation For The Role Of Mn In The Activity
Of Phi6 Rna-dependent Rna Polymerase
pdb|2JLF|C Chain C, Structural Explanation For The Role Of Mn In The Activity
Of Phi6 Rna-dependent Rna Polymerase
pdb|2JLG|A Chain A, Structural Explanation For The Role Of Mn In The Activity
Of Phi6 Rna-Dependent Rna Polymerase
pdb|2JLG|B Chain B, Structural Explanation For The Role Of Mn In The Activity
Of Phi6 Rna-Dependent Rna Polymerase
pdb|2JLG|C Chain C, Structural Explanation For The Role Of Mn In The Activity
Of Phi6 Rna-Dependent Rna Polymerase
Length = 664
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 81 PVTCNYGAVMPSWFDIHEIPVTASSPKDESSLL----KAVRNVHAMIDKEVAAGIDPNNV 136
P C + + S++ HE + S D++ L +A+ H + + ++P+
Sbjct: 430 PSACRF---LDSYWQGHE-EIRQISKSDDAMLGWTKGRALVGGHRLFEMLKEGKVNPSPY 485
Query: 137 FVCGFSQGGALTLASVLLYP-RKLGGGAIFSGWVPFNASLIDQFT 180
+ GGA L +LLY R+ G AIF G + N+ L +QF+
Sbjct: 486 MKISYQHGGAF-LGDILLYDSRREPGSAIFVGNI--NSMLNNQFS 527
>pdb|4A8F|A Chain A, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8F|B Chain B, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8F|C Chain C, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8K|A Chain A, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8K|B Chain B, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8K|C Chain C, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8M|P Chain P, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8M|Q Chain Q, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8M|R Chain R, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
Length = 665
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 81 PVTCNYGAVMPSWFDIHEIPVTASSPKDESSLL----KAVRNVHAMIDKEVAAGIDPNNV 136
P C + + S++ HE + S D++ L +A+ H + + ++P+
Sbjct: 431 PSACRF---LDSYWQGHE-EIRQISKSDDAMLGWTKGRALVGGHRLFEMLKEGKVNPSPY 486
Query: 137 FVCGFSQGGALTLASVLLYP-RKLGGGAIFSGWVPFNASLIDQFT 180
+ GGA L +LLY R+ G AIF G + N+ L +QF+
Sbjct: 487 MKISYEHGGAF-LGDILLYDSRREPGSAIFVGNI--NSMLNNQFS 528
>pdb|4A8O|A Chain A, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8O|B Chain B, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8O|C Chain C, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8Q|A Chain A, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8Q|B Chain B, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8Q|C Chain C, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8S|A Chain A, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8S|B Chain B, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8S|C Chain C, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8W|A Chain A, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8W|B Chain B, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8W|C Chain C, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8Y|A Chain A, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8Y|B Chain B, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8Y|C Chain C, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
Length = 665
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 81 PVTCNYGAVMPSWFDIHEIPVTASSPKDESSLL----KAVRNVHAMIDKEVAAGIDPNNV 136
P C + + S++ HE + S D++ L +A+ H + + ++P+
Sbjct: 431 PSACRF---LDSYWQGHE-EIRQISKSDDAMLGWTKGRALVGGHRLFEMLKEGKVNPSPY 486
Query: 137 FVCGFSQGGALTLASVLLYP-RKLGGGAIFSGWVPFNASLIDQFT 180
+ GGA L +LLY R+ G AIF G + N+ L +QF+
Sbjct: 487 MKISYEHGGAF-LGDILLYDSRREPGSAIFVGNI--NSMLNNQFS 528
>pdb|1HHS|A Chain A, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
pdb|1HHS|B Chain B, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
pdb|1HHS|C Chain C, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
pdb|1HHT|P Chain P, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Template
pdb|1HHT|Q Chain Q, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Template
pdb|1HHT|R Chain R, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Template
pdb|1HI0|P Chain P, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Initiation Complex
pdb|1HI0|Q Chain Q, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Initiation Complex
pdb|1HI0|R Chain R, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Initiation Complex
pdb|1HI1|A Chain A, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Bound Ntp
pdb|1HI1|B Chain B, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Bound Ntp
pdb|1HI1|C Chain C, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Bound Ntp
pdb|1UVI|A Chain A, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 6nt Rna
pdb|1UVI|B Chain B, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 6nt Rna
pdb|1UVI|C Chain C, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 6nt Rna
pdb|1UVJ|A Chain A, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 7nt Rna
pdb|1UVJ|B Chain B, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 7nt Rna
pdb|1UVJ|C Chain C, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 7nt Rna
pdb|1UVK|A Chain A, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
Dead-End Complex
pdb|1UVK|C Chain C, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
Dead-End Complex
pdb|1UVK|E Chain E, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
Dead-End Complex
pdb|1UVL|A Chain A, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 5nt Rna Conformation B
pdb|1UVL|C Chain C, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 5nt Rna Conformation B
pdb|1UVL|E Chain E, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 5nt Rna Conformation B
pdb|1UVM|A Chain A, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 5nt Rna Conformation A
pdb|1UVM|B Chain B, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 5nt Rna Conformation A
pdb|1UVM|C Chain C, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 5nt Rna Conformation A
pdb|1UVN|A Chain A, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
Ca2+ Inhibition Complex
pdb|1UVN|C Chain C, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
Ca2+ Inhibition Complex
pdb|1UVN|E Chain E, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
Ca2+ Inhibition Complex
pdb|4B02|A Chain A, The C-Terminal Priming Domain Is Strongly Associated With
The Main Body Of Bacteriophage Phi6 Rna-Dependent Rna
Polymerase
pdb|4B02|B Chain B, The C-Terminal Priming Domain Is Strongly Associated With
The Main Body Of Bacteriophage Phi6 Rna-Dependent Rna
Polymerase
pdb|4B02|C Chain C, The C-Terminal Priming Domain Is Strongly Associated With
The Main Body Of Bacteriophage Phi6 Rna-Dependent Rna
Polymerase
Length = 664
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 81 PVTCNYGAVMPSWFDIHEIPVTASSPKDESSLL----KAVRNVHAMIDKEVAAGIDPNNV 136
P C + + S++ HE + S D++ L +A+ H + + ++P+
Sbjct: 430 PSACRF---LDSYWQGHE-EIRQISKSDDAMLGWTKGRALVGGHRLFEMLKEGKVNPSPY 485
Query: 137 FVCGFSQGGALTLASVLLYP-RKLGGGAIFSGWVPFNASLIDQFT 180
+ GGA L +LLY R+ G AIF G + N+ L +QF+
Sbjct: 486 MKISYEHGGAF-LGDILLYDSRREPGSAIFVGNI--NSMLNNQFS 527
>pdb|1WAC|A Chain A, Back-Priming Mode Of Phi6 Rna-Dependent Rna Polymerase
pdb|1WAC|B Chain B, Back-Priming Mode Of Phi6 Rna-Dependent Rna Polymerase
pdb|1WAC|C Chain C, Back-Priming Mode Of Phi6 Rna-Dependent Rna Polymerase
Length = 662
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 81 PVTCNYGAVMPSWFDIHEIPVTASSPKDESSLL----KAVRNVHAMIDKEVAAGIDPNNV 136
P C + + S++ HE + S D++ L +A+ H + + ++P+
Sbjct: 430 PSACRF---LDSYWQGHE-EIRQISKSDDAMLGWTKGRALVGGHRLFEMLKEGKVNPSPY 485
Query: 137 FVCGFSQGGALTLASVLLYP-RKLGGGAIFSGWVPFNASLIDQFT 180
+ GGA L +LLY R+ G AIF G + N+ L +QF+
Sbjct: 486 MKISYEHGGAF-LGDILLYDSRREPGSAIFVGNI--NSMLNNQFS 527
>pdb|1C7J|A Chain A, Pnb Esterase 56c8
Length = 489
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 9/54 (16%)
Query: 108 DESSLLKAVR-NVHAMIDKEVAAGIDPNNVFVCGFSQGGALTLASVLLYPRKLG 160
D+++ LK VR N+ A G DP+NV V G S GG +++A++L P G
Sbjct: 161 DQAAALKWVRENISAF-------GGDPDNVTVFGESAGG-MSIAALLAMPAAKG 206
>pdb|1C7I|A Chain A, Thermophylic Pnb Esterase
Length = 489
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 9/54 (16%)
Query: 108 DESSLLKAVR-NVHAMIDKEVAAGIDPNNVFVCGFSQGGALTLASVLLYPRKLG 160
D+++ LK VR N+ A G DP+NV V G S GG +++A++L P G
Sbjct: 161 DQAAALKWVRENISAF-------GGDPDNVTVFGESAGG-MSIAALLAMPAAKG 206
>pdb|1QE3|A Chain A, Pnb Esterase
Length = 489
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 9/54 (16%)
Query: 108 DESSLLKAVR-NVHAMIDKEVAAGIDPNNVFVCGFSQGGALTLASVLLYPRKLG 160
D+++ LK VR N+ A G DP+NV V G S GG +++A++L P G
Sbjct: 161 DQAAALKWVRENISAF-------GGDPDNVTVFGESAGG-MSIAALLAMPAAKG 206
>pdb|2H1I|A Chain A, Crystal Structure Of The Bacillus Cereus Carboxylesterase
pdb|2H1I|B Chain B, Crystal Structure Of The Bacillus Cereus Carboxylesterase
pdb|2H1I|C Chain C, Crystal Structure Of The Bacillus Cereus Carboxylesterase
Length = 226
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 7/106 (6%)
Query: 108 DESSLLKAVRNVHAMIDKEVAA-GIDPNNVFVCGFSQGGALTLASVLLYPRKLGGGAIFS 166
DE L+ + ++ +D+ D NN+ G+S G + + + Y L G +
Sbjct: 92 DEEDLIFRTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHH 151
Query: 167 GWVPFNASLIDQ------FTSDAKKTPILWSHGMADRTVLFEAGQA 206
VP + F + PI S + VL E A
Sbjct: 152 PXVPRRGXQLANLAGKSVFIAAGTNDPICSSAESEELKVLLENANA 197
>pdb|3QK3|A Chain A, Crystal Structure Of Human Beta-Crystallin B3
pdb|3QK3|B Chain B, Crystal Structure Of Human Beta-Crystallin B3
pdb|3QK3|C Chain C, Crystal Structure Of Human Beta-Crystallin B3
Length = 184
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 186 TPILWSHGMADRTVLFEAGQAGPPFLEQAGISCEFKAYPGLGHSISNEELRNLESW 241
P LW+HG DR A + + EF Y G + E R+ W
Sbjct: 121 VPSLWAHGFQDRVASVRA-------INGTWVGYEFPGYRGRQYVFERGEYRHWNEW 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,901,204
Number of Sequences: 62578
Number of extensions: 322101
Number of successful extensions: 768
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 739
Number of HSP's gapped (non-prelim): 31
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)