Query 025552
Match_columns 251
No_of_seqs 167 out of 358
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 07:00:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025552.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025552hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2567 Uncharacterized conser 100.0 6.7E-49 1.4E-53 333.0 13.4 143 1-143 1-143 (179)
2 PRK04015 DNA/RNA-binding prote 99.8 1.9E-20 4.2E-25 146.5 11.3 88 16-115 2-91 (91)
3 TIGR00285 DNA-binding protein 99.8 5.3E-19 1.2E-23 137.2 11.4 87 18-114 1-87 (87)
4 COG1581 Ssh10b Archaeal DNA-bi 99.8 4.4E-18 9.4E-23 131.8 11.7 89 17-115 3-91 (91)
5 PF01918 Alba: Alba; InterPro 99.7 7.3E-17 1.6E-21 118.7 9.5 65 19-83 1-69 (70)
6 PF12328 Rpp20: Rpp20 subunit 99.4 1.1E-12 2.4E-17 110.5 9.2 93 18-111 3-144 (144)
7 KOG0921 Dosage compensation co 95.1 0.15 3.2E-06 54.6 10.0 8 85-92 1081-1088(1282)
8 KOG3973 Uncharacterized conser 89.7 2.3 5E-05 41.4 9.1 17 103-119 289-305 (465)
9 PF05918 API5: Apoptosis inhib 85.6 0.47 1E-05 48.2 2.0 34 59-92 429-464 (556)
10 PF04232 SpoVS: Stage V sporul 82.7 21 0.00046 28.0 11.4 51 19-71 2-53 (86)
11 PF05918 API5: Apoptosis inhib 72.8 1.2 2.5E-05 45.5 0.0 8 110-117 457-464 (556)
12 KOG3262 H/ACA small nucleolar 65.9 24 0.00051 31.8 6.7 8 107-114 105-112 (215)
13 KOG3172 Small nuclear ribonucl 49.9 15 0.00032 30.2 2.5 6 188-193 95-100 (119)
14 PRK02399 hypothetical protein; 43.8 65 0.0014 31.9 6.3 45 17-61 185-232 (406)
15 PF06792 UPF0261: Uncharacteri 43.1 66 0.0014 31.8 6.3 45 17-61 184-231 (403)
16 KOG1402 Ornithine aminotransfe 38.9 1.9E+02 0.004 28.7 8.4 79 44-138 115-195 (427)
17 PRK14457 ribosomal RNA large s 35.3 97 0.0021 29.7 6.0 60 29-90 134-197 (345)
18 PRK11634 ATP-dependent RNA hel 33.2 58 0.0013 33.6 4.4 13 57-69 255-267 (629)
19 COG0290 InfC Translation initi 32.5 2.6E+02 0.0056 24.8 7.6 60 17-76 89-151 (176)
20 PF02780 Transketolase_C: Tran 31.2 1.4E+02 0.003 23.4 5.4 38 45-84 9-47 (124)
21 cd00133 PTS_IIB PTS_IIB: subun 30.7 1.7E+02 0.0037 20.2 5.4 35 52-86 5-39 (84)
22 PRK14463 ribosomal RNA large s 28.2 1.8E+02 0.0039 27.9 6.5 40 30-69 134-173 (349)
23 TIGR00106 uncharacterized prot 27.5 1.2E+02 0.0026 23.9 4.4 32 26-58 14-45 (97)
24 cd05566 PTS_IIB_galactitol PTS 25.7 2.1E+02 0.0045 21.0 5.3 31 56-86 10-40 (89)
25 PRK14459 ribosomal RNA large s 25.6 2.4E+02 0.0052 27.5 6.9 81 29-119 154-249 (373)
26 PRK10824 glutaredoxin-4; Provi 24.9 71 0.0015 26.0 2.8 15 96-110 62-76 (115)
27 PRK14460 ribosomal RNA large s 24.4 1.4E+02 0.003 28.6 5.0 59 28-86 134-202 (354)
28 COG1731 Archaeal riboflavin sy 24.1 85 0.0019 26.9 3.1 36 18-54 31-66 (154)
29 PRK14456 ribosomal RNA large s 23.1 1.7E+02 0.0038 28.3 5.4 81 29-119 154-245 (368)
30 cd05013 SIS_RpiR RpiR-like pro 22.7 2.4E+02 0.0051 21.4 5.3 36 32-69 2-37 (139)
31 COG2065 PyrR Pyrimidine operon 22.6 1.1E+02 0.0024 27.1 3.6 53 43-122 28-80 (179)
32 PRK15062 hydrogenase isoenzyme 22.1 3.6E+02 0.0077 26.5 7.3 107 20-135 111-222 (364)
33 KOG0523 Transketolase [Carbohy 21.8 1.3E+02 0.0029 31.4 4.5 30 39-69 500-529 (632)
34 PRK14465 ribosomal RNA large s 21.5 2.7E+02 0.0059 26.7 6.4 59 29-88 138-201 (342)
35 KOG3212 Uncharacterized conser 20.9 1.8E+02 0.0039 26.3 4.6 65 30-95 68-150 (208)
36 COG1416 Uncharacterized conser 20.7 1.7E+02 0.0037 24.1 4.1 42 20-61 7-48 (112)
No 1
>KOG2567 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.7e-49 Score=333.01 Aligned_cols=143 Identities=45% Similarity=0.693 Sum_probs=138.5
Q ss_pred CCCceeccCCCCCCCCCCCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHHhcCccceeEE
Q 025552 1 MDRYQRVEKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVI 80 (251)
Q Consensus 1 Md~Y~rV~kp~~~~p~~~NeIrVt~k~kirnyV~~A~~lL~~~~~~~VvIka~G~AIsKAV~vAEILKrRi~GLhQ~t~I 80 (251)
||.|++|-||+++.|++.|+|||+.+++|+|||.||+.+|+++.++.|||+|||+||+|||+||||||+|+++|||+|+|
T Consensus 1 ~~~e~~~~kP~~d~pp~a~emrV~~g~kirN~i~~A~~~L~~~~~r~VVfsg~Grai~KTVscaEilKrRipgLhQ~t~l 80 (179)
T KOG2567|consen 1 MSVEQPASKPFPDLPPDANEMRVKSGSKIRNLIEFATELLQKGSHRCVVFSGSGRAIVKTVSCAEILKRRIPGLHQVTRL 80 (179)
T ss_pred CccccccCCCcccCCCCcceEEEccCchHHHHHHHHHHHhhCCCeeEEEEecCCcceeeeeeHHHHHhhhCcchhhhcee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccccccCCCcceeeeeeeEEEEEEecccCCCCCCCcCCCCCCcCCccCccccCCC
Q 025552 81 GSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELNRSSVGYQPPLPAEQVKPLIEFDYDG 143 (251)
Q Consensus 81 ~sv~i~d~~ePleEgl~~~~~~R~VS~I~ItLSk~~LD~~~pGYQ~Pl~~~~v~~~~~~~~~~ 143 (251)
.+++|+|+|+|++|||++++++||||+|+|+||+++||++++|||+|.+..+...+...+|+.
T Consensus 81 ~~~sv~d~W~p~~eGl~pl~vtRhVp~l~IlLS~deL~~~~~GyQ~P~~~p~p~~~~~~p~~~ 143 (179)
T KOG2567|consen 81 RYTSVEDVWEPTEEGLEPLEVTRHVPMLHILLSLDELDPTSPGYQPPNPQPHPRSQPRHPYSP 143 (179)
T ss_pred eeeehhhcccccccCccceEEeeccceEEEEEecccCCCCCCCccCCCCCCCCCCcccCCccc
Confidence 999999999999999999999999999999999999999999999999988888877776653
No 2
>PRK04015 DNA/RNA-binding protein albA; Provisional
Probab=99.84 E-value=1.9e-20 Score=146.45 Aligned_cols=88 Identities=33% Similarity=0.558 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHHhcCccceeE--EEEEEecccccccc
Q 025552 16 IDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTV--IGSTDITDTWEPLE 93 (251)
Q Consensus 16 ~~~NeIrVt~k~kirnyV~~A~~lL~~~~~~~VvIka~G~AIsKAV~vAEILKrRi~GLhQ~t~--I~sv~i~d~~ePle 93 (251)
..+|+|+|+++ +++|||.+++.+|+ ++.++|+|||+|+||+|||+||||||+||...+++.+ |+|..+.+ +
T Consensus 2 ~~en~i~Ig~k-pvmnYV~~~~~~l~-~g~~eV~iKa~G~aIskAV~vaEilk~r~~~~v~v~~I~i~se~i~~-----~ 74 (91)
T PRK04015 2 AEENVVLVGKK-PVMNYVLAVLTQFN-QGAKEVVIKARGRAISKAVDVAEIVRNRFLPDVEIKEIKIGTEEVTS-----E 74 (91)
T ss_pred CCCCEEEEcCC-cHHHHHHHHHHHHh-CCCCeEEEEEeccccchhhhHHHHHHHhccCCeEEEEEEeccEEeec-----C
Confidence 46899999997 79999999999999 6899999999999999999999999999976666533 44433332 2
Q ss_pred cCCCcceeeeeeeEEEEEEecc
Q 025552 94 EGLLPLETTRHVSMITITLSKK 115 (251)
Q Consensus 94 Egl~~~~~~R~VS~I~ItLSk~ 115 (251)
+| .+++||+|+|+|+++
T Consensus 75 ~g-----~~~~VS~IEI~l~k~ 91 (91)
T PRK04015 75 DG-----RESNVSTIEIVLEKK 91 (91)
T ss_pred CC-----cEEEEEEEEEEEecC
Confidence 33 678999999999974
No 3
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=99.80 E-value=5.3e-19 Score=137.22 Aligned_cols=87 Identities=31% Similarity=0.475 Sum_probs=71.7
Q ss_pred CCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHHhcCccceeEEEEEEecccccccccCCC
Q 025552 18 ENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLL 97 (251)
Q Consensus 18 ~NeIrVt~k~kirnyV~~A~~lL~~~~~~~VvIka~G~AIsKAV~vAEILKrRi~GLhQ~t~I~sv~i~d~~ePleEgl~ 97 (251)
+|.|+|+++ +++|||.+++.+|+ ++.++|+|||+|+||+|||+|||+||+||...++ +..+++..+-.+.++|
T Consensus 1 e~~i~vG~K-PvmnYVlavlt~fn-~g~~eV~iKarG~aIskAVdvaeiik~r~~~~v~---v~~I~i~te~~~~~~G-- 73 (87)
T TIGR00285 1 ENVVYIGNK-PVMNYVLAVLTQLN-SGADEVIIKARGRAISRAVDVAEIVRNRFIPDIK---IKKIKIGTEEIKSEQG-- 73 (87)
T ss_pred CCEEEEcCC-cHHHHHHHHHHHHh-CCCCeEEEEEecchhhhHHHHHHHHHHhccCCce---EEEEEeccEEeecCCC--
Confidence 589999998 79999999999998 5899999999999999999999999999976555 4444444433333444
Q ss_pred cceeeeeeeEEEEEEec
Q 025552 98 PLETTRHVSMITITLSK 114 (251)
Q Consensus 98 ~~~~~R~VS~I~ItLSk 114 (251)
.+++||+|+|+|++
T Consensus 74 ---~~~~VStIEI~l~~ 87 (87)
T TIGR00285 74 ---REVNVSTIEIVLAK 87 (87)
T ss_pred ---ceeeEEEEEEEEeC
Confidence 56799999999975
No 4
>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]
Probab=99.77 E-value=4.4e-18 Score=131.78 Aligned_cols=89 Identities=34% Similarity=0.539 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHHhcCccceeEEEEEEecccccccccCC
Q 025552 17 DENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGL 96 (251)
Q Consensus 17 ~~NeIrVt~k~kirnyV~~A~~lL~~~~~~~VvIka~G~AIsKAV~vAEILKrRi~GLhQ~t~I~sv~i~d~~ePleEgl 96 (251)
++|.|+|.+| +++|||..++++|++ +.++|+|||.|+||||||++||||+.||.- .++|..++|.++-...++|
T Consensus 3 ~envV~vG~K-PvmNYVlAvlt~fn~-g~~eViiKARGraIskAVDvaeivRnrf~p---~v~ik~Iki~se~~~~~~g- 76 (91)
T COG1581 3 EENVVLVGKK-PVMNYVLAVLTQFNE-GADEVIIKARGRAISKAVDVAEIVRNRFIP---DVQIKDIKIGTEELEGEDG- 76 (91)
T ss_pred CccEEEEcCc-chHHHHHHHHHHHHc-CCCEEEEEecchhhHhhHhHHHHHHHhcCC---CceEEEEEecceeeecCCC-
Confidence 5699999998 799999999999995 799999999999999999999999999963 5667777766543333443
Q ss_pred CcceeeeeeeEEEEEEecc
Q 025552 97 LPLETTRHVSMITITLSKK 115 (251)
Q Consensus 97 ~~~~~~R~VS~I~ItLSk~ 115 (251)
.+++||+|+|.|.+.
T Consensus 77 ----r~~~VS~IeI~L~k~ 91 (91)
T COG1581 77 ----RTRNVSTIEIVLAKK 91 (91)
T ss_pred ----ceeeEEEEEEEEecC
Confidence 477999999999873
No 5
>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function. The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....
Probab=99.71 E-value=7.3e-17 Score=118.71 Aligned_cols=65 Identities=40% Similarity=0.653 Sum_probs=58.1
Q ss_pred CeEEEcCCCchhHHHHHHHHHH---hhCCCCeEEEEEcChhHHHHHHHHHHHHHHhc-CccceeEEEEE
Q 025552 19 NEIRITSQGRMRSYITYAMTLL---QERGSNEIVFKAMGRAINKTVTIVELIKRRIV-GLHQNTVIGST 83 (251)
Q Consensus 19 NeIrVt~k~kirnyV~~A~~lL---~~~~~~~VvIka~G~AIsKAV~vAEILKrRi~-GLhQ~t~I~sv 83 (251)
|+|+|++++++++||.+|+.+| +..+.++|+|+|+|+||+|||+||||||+++. +|||++.+.+.
T Consensus 1 n~I~V~~~~~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K~~~~~~~~qv~~~t~t 69 (70)
T PF01918_consen 1 NEIYVSSNSPIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILKRRFGEGLYQVNKITST 69 (70)
T ss_dssp SEEEE-STS-HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHHHHTSTTTEEEEEEEEE
T ss_pred CEEEECCCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHHHhhcCCCEEEEEEecc
Confidence 7999999999999999999999 44679999999999999999999999999995 89999887753
No 6
>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B.
Probab=99.40 E-value=1.1e-12 Score=110.47 Aligned_cols=93 Identities=27% Similarity=0.389 Sum_probs=66.7
Q ss_pred CCeEEEcCCCchhHHHHHHHHHHhh---C----------------C------------CCeEEEEEcChhHHHHHHHHHH
Q 025552 18 ENEIRITSQGRMRSYITYAMTLLQE---R----------------G------------SNEIVFKAMGRAINKTVTIVEL 66 (251)
Q Consensus 18 ~NeIrVt~k~kirnyV~~A~~lL~~---~----------------~------------~~~VvIka~G~AIsKAV~vAEI 66 (251)
++.|+|+++++|++.|..+.+||.. . . ..+|+|||||+||.||++||.-
T Consensus 3 ~~~iyVss~TPfmSavKRv~K~L~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~gtGkAIeKal~la~~ 82 (144)
T PF12328_consen 3 PKVIYVSSKTPFMSAVKRVRKLLDKAEKRATSSVNLAKKKKSQKKKIAQLAEGSEALKSEEVTVKGTGKAIEKALSLALW 82 (144)
T ss_dssp TTEEE--SS--HHHHHHHHHHHHHHHHHH----------------T-------------SEEEEEEEGGGHHHHHHHHHH
T ss_pred CcEEEEecCCchHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccCccEEEEEeccHHHHHHHHHHHH
Confidence 5789999999999999999999963 1 1 2799999999999999999999
Q ss_pred HHHHhcCccceeEEEEEEecccccccc------------------cCCCcceeeeeeeEEEEE
Q 025552 67 IKRRIVGLHQNTVIGSTDITDTWEPLE------------------EGLLPLETTRHVSMITIT 111 (251)
Q Consensus 67 LKrRi~GLhQ~t~I~sv~i~d~~ePle------------------Egl~~~~~~R~VS~I~It 111 (251)
|++.. ++--.+.+.||.+.|++++.+ +..++...+|.||+|+|.
T Consensus 83 Fq~~~-~~~V~V~TgTV~vvDdi~~~e~~~~~~~~~~~~~~~~~~~~~~~esR~R~vS~VEv~ 144 (144)
T PF12328_consen 83 FQRKK-GYKVEVRTGTVEVVDDIVEDEDEDEDEEESEEREDDDDDEDEEPESRTRWVSMVEVA 144 (144)
T ss_dssp HHHTT----EEEEEEEEEEEEE-----------------------------EEEEEEEEEEEE
T ss_pred HhhcC-CeEEEEEeceEEEEEEEeeccccccccccccccccCccccccCccceEEeeEEEEEC
Confidence 98875 454569999999999998653 456788999999999984
No 7
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=95.06 E-value=0.15 Score=54.62 Aligned_cols=8 Identities=38% Similarity=0.717 Sum_probs=4.2
Q ss_pred eccccccc
Q 025552 85 ITDTWEPL 92 (251)
Q Consensus 85 i~d~~ePl 92 (251)
+.|+|.-+
T Consensus 1081 ~VDdWIkl 1088 (1282)
T KOG0921|consen 1081 RVDDWIKL 1088 (1282)
T ss_pred EeeceeeE
Confidence 45566544
No 8
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=89.69 E-value=2.3 Score=41.43 Aligned_cols=17 Identities=24% Similarity=0.120 Sum_probs=7.8
Q ss_pred eeeeEEEEEEecccCCC
Q 025552 103 RHVSMITITLSKKELNR 119 (251)
Q Consensus 103 R~VS~I~ItLSk~~LD~ 119 (251)
+..|.|+=++.-...|.
T Consensus 289 ~Taski~k~~igrvPDR 305 (465)
T KOG3973|consen 289 RTASKIHKLSIGRVPDR 305 (465)
T ss_pred hhhhhhcccccccCCCC
Confidence 34455654444332244
No 9
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=85.58 E-value=0.47 Score=48.24 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhcCccceeEEEEE--Eeccccccc
Q 025552 59 KTVTIVELIKRRIVGLHQNTVIGST--DITDTWEPL 92 (251)
Q Consensus 59 KAV~vAEILKrRi~GLhQ~t~I~sv--~i~d~~ePl 92 (251)
.|+.+++=|-.-+..||...-+... .|+=.|.+.
T Consensus 429 ~aLkt~~NI~~lik~L~~~pPsf~~~~~itlSWk~~ 464 (556)
T PF05918_consen 429 TALKTTNNILALIKDLFHNPPSFKSTKNITLSWKEA 464 (556)
T ss_dssp HHHHHHHHHHHHHCC----------------TTS--
T ss_pred HHHHHHhhHHHHHHHHhhCCcccccccccceeeeec
Confidence 4665666566666677665333322 255567543
No 10
>PF04232 SpoVS: Stage V sporulation protein S (SpoVS); InterPro: IPR007347 In Bacillus subtilis this protein interferes with sporulation at an early stage and this inhibitory effect is overcome by SpoIIB and SpoVG. SpoVS seems to play a positive role in allowing progression beyond stage V of sporulation. Null mutations in the spoVS gene block sporulation at stage V, impairing the development of heat resistance and coat assembly [].; PDB: 2EH1_B 2EK0_B.
Probab=82.66 E-value=21 Score=27.97 Aligned_cols=51 Identities=16% Similarity=0.350 Sum_probs=35.4
Q ss_pred CeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcC-hhHHHHHHHHHHHHHHh
Q 025552 19 NEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMG-RAINKTVTIVELIKRRI 71 (251)
Q Consensus 19 NeIrVt~k~kirnyV~~A~~lL~~~~~~~VvIka~G-~AIsKAV~vAEILKrRi 71 (251)
+.++|.+++.....-..-...|.++ ..+.|.++| .|++.||.-.-|-+.-+
T Consensus 2 e~LKVSs~S~p~~vAgAIa~~lre~--~~v~lqaiGa~AvnqAvKAIAiAR~~l 53 (86)
T PF04232_consen 2 EVLKVSSKSNPNAVAGAIAGVLREG--GKVELQAIGAGAVNQAVKAIAIARGYL 53 (86)
T ss_dssp -EEEE-TT--HHHHHHHHHHHHHHT--SEEEEEE-SHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCHHHHHHHHHHHHhcC--CcEEEEEECHHHHHHHHHHHHHHHHhh
Confidence 4689999988887777777777753 699999999 78888887766666544
No 11
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=72.77 E-value=1.2 Score=45.52 Aligned_cols=8 Identities=75% Similarity=0.617 Sum_probs=1.7
Q ss_pred EEEecccC
Q 025552 110 ITLSKKEL 117 (251)
Q Consensus 110 ItLSk~~L 117 (251)
|+||-++.
T Consensus 457 itlSWk~~ 464 (556)
T PF05918_consen 457 ITLSWKEA 464 (556)
T ss_dssp ---TTS--
T ss_pred cceeeeec
Confidence 56665443
No 12
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=65.90 E-value=24 Score=31.80 Aligned_cols=8 Identities=25% Similarity=0.239 Sum_probs=4.1
Q ss_pred EEEEEEec
Q 025552 107 MITITLSK 114 (251)
Q Consensus 107 ~I~ItLSk 114 (251)
.++|+||-
T Consensus 105 ~fsIK~~d 112 (215)
T KOG3262|consen 105 HFSIKPSD 112 (215)
T ss_pred EEEEecCC
Confidence 45555554
No 13
>KOG3172 consensus Small nuclear ribonucleoprotein Sm D3 [RNA processing and modification]
Probab=49.93 E-value=15 Score=30.20 Aligned_cols=6 Identities=67% Similarity=1.232 Sum_probs=2.3
Q ss_pred cccccc
Q 025552 188 RGRGRG 193 (251)
Q Consensus 188 rgrgrg 193 (251)
.+||+.
T Consensus 95 ~~RG~~ 100 (119)
T KOG3172|consen 95 PGRGRA 100 (119)
T ss_pred CCcccc
Confidence 333333
No 14
>PRK02399 hypothetical protein; Provisional
Probab=43.78 E-value=65 Score=31.93 Aligned_cols=45 Identities=33% Similarity=0.451 Sum_probs=37.2
Q ss_pred CCCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcC---hhHHHHH
Q 025552 17 DENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMG---RAINKTV 61 (251)
Q Consensus 17 ~~NeIrVt~k~kirnyV~~A~~lL~~~~~~~VvIka~G---~AIsKAV 61 (251)
+.--|=||.=+-...+|..+...|++++++.+||||.| +|+.+-|
T Consensus 185 ~kp~Ig~TmfGvTtp~v~~~~~~Le~~GyEvlVFHATG~GGraME~Li 232 (406)
T PRK02399 185 DKPLIGLTMFGVTTPCVQAAREELEARGYEVLVFHATGTGGRAMEKLI 232 (406)
T ss_pred CCceEEEecCCCcHHHHHHHHHHHHhCCCeEEEEcCCCCchHHHHHHH
Confidence 34467888866777999999999998899999999996 7777654
No 15
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=43.08 E-value=66 Score=31.84 Aligned_cols=45 Identities=31% Similarity=0.431 Sum_probs=39.0
Q ss_pred CCCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcC---hhHHHHH
Q 025552 17 DENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMG---RAINKTV 61 (251)
Q Consensus 17 ~~NeIrVt~k~kirnyV~~A~~lL~~~~~~~VvIka~G---~AIsKAV 61 (251)
+.--|=||.=+-...+|..+...|++.+++.+||||.| +|+.+-|
T Consensus 184 ~kp~I~iTmfGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~GG~aME~Li 231 (403)
T PF06792_consen 184 DKPLIGITMFGVTTPCVDAIRERLEEEGYEVLVFHATGTGGRAMERLI 231 (403)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHH
Confidence 45588999988888999999999999899999999996 7777765
No 16
>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]
Probab=38.92 E-value=1.9e+02 Score=28.68 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=48.5
Q ss_pred CCCeEEEEEcC-hhHHHHHHHHHHHHHHhcCccceeEEEEEEecccccccccCCCcceeeeeeeEEEEEEecccCCCCCC
Q 025552 44 GSNEIVFKAMG-RAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELNRSSV 122 (251)
Q Consensus 44 ~~~~VvIka~G-~AIsKAV~vAEILKrRi~GLhQ~t~I~sv~i~d~~ePleEgl~~~~~~R~VS~I~ItLSk~~LD~~~p 122 (251)
+.+.|.=+..| .|...|+.+|-..-.+.+++.++-.+--......| -|..++ |.||.+| .+-.
T Consensus 115 ~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFh------------GrT~~a--is~s~d~--ds~~ 178 (427)
T KOG1402|consen 115 GYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFH------------GRTLGA--ISLSTDP--DSWD 178 (427)
T ss_pred CcceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEeccccc------------Cceeee--EEecCCc--chhh
Confidence 47888888888 67788888887776666766554222211122222 244444 5677777 4566
Q ss_pred CcCCCCCC-cCCccCcc
Q 025552 123 GYQPPLPA-EQVKPLIE 138 (251)
Q Consensus 123 GYQ~Pl~~-~~v~~~~~ 138 (251)
+||+++|- .+.-|+.+
T Consensus 179 ~fgp~~P~~~~~v~Y~d 195 (427)
T KOG1402|consen 179 GFGPFLPGVVDKVPYGD 195 (427)
T ss_pred ccCCCCCCcceeeccCC
Confidence 99999998 44444443
No 17
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.28 E-value=97 Score=29.67 Aligned_cols=60 Identities=13% Similarity=0.337 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHhhCCCCeEEEEEcChhHHH---HHHHHHHHHHHhcCc-cceeEEEEEEeccccc
Q 025552 29 MRSYITYAMTLLQERGSNEIVFKAMGRAINK---TVTIVELIKRRIVGL-HQNTVIGSTDITDTWE 90 (251)
Q Consensus 29 irnyV~~A~~lL~~~~~~~VvIka~G~AIsK---AV~vAEILKrRi~GL-hQ~t~I~sv~i~d~~e 90 (251)
|...|..+...+. ...+.|||.|||.-.-+ .+....+|+..+ ++ +-.+.|+|+-+.+.++
T Consensus 134 Iv~qv~~~~~~~~-~~~~~IvfmGmGEPlln~~~v~~~i~~l~~~~-~i~~r~itvST~G~~~~i~ 197 (345)
T PRK14457 134 IVDQVLTVQEDMQ-RRVSHVVFMGMGEPLLNIDEVLAAIRCLNQDL-GIGQRRITVSTVGVPKTIP 197 (345)
T ss_pred HHHHHHHHHHHhc-CCCCEEEEEecCccccCHHHHHHHHHHHhccc-CCccCceEEECCCchhhHH
Confidence 4445555554443 35899999999966554 445555555442 33 2346677665554433
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=33.24 E-value=58 Score=33.59 Aligned_cols=13 Identities=31% Similarity=0.509 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q 025552 57 INKTVTIVELIKR 69 (251)
Q Consensus 57 IsKAV~vAEILKr 69 (251)
...|..+++.|+.
T Consensus 255 k~~a~~l~~~L~~ 267 (629)
T PRK11634 255 KNATLEVAEALER 267 (629)
T ss_pred HHHHHHHHHHHHh
Confidence 4455556666654
No 19
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=32.49 E-value=2.6e+02 Score=24.81 Aligned_cols=60 Identities=17% Similarity=0.284 Sum_probs=43.5
Q ss_pred CCCeEEEcCCCchhHH---HHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHHhcCccc
Q 025552 17 DENEIRITSQGRMRSY---ITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQ 76 (251)
Q Consensus 17 ~~NeIrVt~k~kirny---V~~A~~lL~~~~~~~VvIka~G~AIsKAV~vAEILKrRi~GLhQ 76 (251)
.-.||++..+-.-..| +..|..+|++...=.|+|+-.|+.+...=.-..+|.+-...|-.
T Consensus 89 ~vKEik~rp~Id~hD~~~K~k~~~rFLe~GdkVKvtirfrGRe~~h~elG~~~l~r~~~~~~~ 151 (176)
T COG0290 89 QVKEIKLRPKIDEHDYETKLKNARRFLEKGDKVKVTIRFRGREMAHQELGVKVLERVAEDLED 151 (176)
T ss_pred EEEEEEeecCcCcchHHHHHHHHHHHHHCCCeEEEEEEEechhhhhHHHHHHHHHHHHHHhhh
Confidence 4457777776444444 66677788876777899999999999988888888775554433
No 20
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=31.22 E-value=1.4e+02 Score=23.44 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=28.6
Q ss_pred CCeEEEEEcChhHHHHHHHHHHHHHHhcCc-cceeEEEEEE
Q 025552 45 SNEIVFKAMGRAINKTVTIVELIKRRIVGL-HQNTVIGSTD 84 (251)
Q Consensus 45 ~~~VvIka~G~AIsKAV~vAEILKrRi~GL-hQ~t~I~sv~ 84 (251)
-..|+|-++|..+..|+..|++|+.+ |+ -.+..+.++.
T Consensus 9 g~di~iia~G~~~~~al~A~~~L~~~--Gi~~~vi~~~~i~ 47 (124)
T PF02780_consen 9 GADITIIAYGSMVEEALEAAEELEEE--GIKAGVIDLRTIK 47 (124)
T ss_dssp SSSEEEEEETTHHHHHHHHHHHHHHT--TCEEEEEEEEEEE
T ss_pred CCCEEEEeehHHHHHHHHHHHHHHHc--CCceeEEeeEEEe
Confidence 47899999999999999999999986 32 1234455443
No 21
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=30.71 E-value=1.7e+02 Score=20.16 Aligned_cols=35 Identities=11% Similarity=0.244 Sum_probs=23.1
Q ss_pred EcChhHHHHHHHHHHHHHHhcCccceeEEEEEEec
Q 025552 52 AMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDIT 86 (251)
Q Consensus 52 a~G~AIsKAV~vAEILKrRi~GLhQ~t~I~sv~i~ 86 (251)
..+..+..+-.+++.||+.++.+.....++..++.
T Consensus 5 vc~~G~~~s~~l~~~l~~~~~~~~~~~~~~~~~~~ 39 (84)
T cd00133 5 VCGSGIGSSSMLAEKLEKAAKELGIEVKVEAQGLS 39 (84)
T ss_pred ECCCcHhHHHHHHHHHHHHHHHCCCeEEEEEcccc
Confidence 34455566677889999998766665555555444
No 22
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.18 E-value=1.8e+02 Score=27.86 Aligned_cols=40 Identities=13% Similarity=0.270 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHH
Q 025552 30 RSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKR 69 (251)
Q Consensus 30 rnyV~~A~~lL~~~~~~~VvIka~G~AIsKAV~vAEILKr 69 (251)
...+..+..++.....+.|+|.|||.-..+.-.|.+.|+.
T Consensus 134 ~EI~~qv~~~~~~~~i~~IvfmG~GEPl~n~~~vi~~l~~ 173 (349)
T PRK14463 134 AEIVNQVCAVKRDVPVRNIVFMGMGEPLANLDNVIPALQI 173 (349)
T ss_pred HHHHHHHHHHHhcCCccEEEEecCCcchhcHHHHHHHHHH
Confidence 3444444444444468999999999877766566665554
No 23
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=27.52 E-value=1.2e+02 Score=23.87 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=25.9
Q ss_pred CCchhHHHHHHHHHHhhCCCCeEEEEEcChhHH
Q 025552 26 QGRMRSYITYAMTLLQERGSNEIVFKAMGRAIN 58 (251)
Q Consensus 26 k~kirnyV~~A~~lL~~~~~~~VvIka~G~AIs 58 (251)
...+..||..|++.|++.+. ...+++||..|.
T Consensus 14 ~~s~s~yVa~~i~~l~~sGl-~y~~~pm~T~IE 45 (97)
T TIGR00106 14 GASVSSYVAAAIEVLKESGL-KYELHPMGTLIE 45 (97)
T ss_pred CCcHHHHHHHHHHHHHHcCC-CeEecCCccEEe
Confidence 34688999999999987555 788899987664
No 24
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=25.67 E-value=2.1e+02 Score=21.04 Aligned_cols=31 Identities=6% Similarity=0.134 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHhcCccceeEEEEEEec
Q 025552 56 AINKTVTIVELIKRRIVGLHQNTVIGSTDIT 86 (251)
Q Consensus 56 AIsKAV~vAEILKrRi~GLhQ~t~I~sv~i~ 86 (251)
.++.+-.+++.||+.|+.+.-...+..+.+.
T Consensus 10 G~~tS~~l~~~i~~~~~~~~i~~~v~~~~~~ 40 (89)
T cd05566 10 GVATSTVVASKVKELLKENGIDVKVEQCKIA 40 (89)
T ss_pred CccHHHHHHHHHHHHHHHCCCceEEEEecHH
Confidence 3444566788888888755555555544443
No 25
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.61 E-value=2.4e+02 Score=27.52 Aligned_cols=81 Identities=21% Similarity=0.376 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHhhC-------CCCeEEEEEcChhHHH---HHHHHHHHHHHh---cCc-cceeEEEEEEeccccccc-c
Q 025552 29 MRSYITYAMTLLQER-------GSNEIVFKAMGRAINK---TVTIVELIKRRI---VGL-HQNTVIGSTDITDTWEPL-E 93 (251)
Q Consensus 29 irnyV~~A~~lL~~~-------~~~~VvIka~G~AIsK---AV~vAEILKrRi---~GL-hQ~t~I~sv~i~d~~ePl-e 93 (251)
|..+|..+...|... ..+.|||.|||.-..+ .+.+.++|+... .++ +-.+.|+++-+.....-+ +
T Consensus 154 Iv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGmGEPLlN~d~V~~~i~~l~~~~~~g~gis~r~ITvST~Gl~~~i~~la~ 233 (373)
T PRK14459 154 IVEQVRAAARALRDGEVPGGPGRLSNVVFMGMGEPLANYKRVVAAVRRITAPAPEGLGISARNVTVSTVGLVPAIRKLAD 233 (373)
T ss_pred HHHHHHHHHHHhhhcccccCCCceeEEEEecCCcchhhHHHHHHHHHHHhCcccccCCccCCEEEEECcCchhHHHHHHH
Confidence 445566655555421 2567999999977654 555566666531 233 224666666444322111 2
Q ss_pred cCCCcceeeeeeeEEEEEEecccCCC
Q 025552 94 EGLLPLETTRHVSMITITLSKKELNR 119 (251)
Q Consensus 94 Egl~~~~~~R~VS~I~ItLSk~~LD~ 119 (251)
+++ -+.|.||...+|.
T Consensus 234 ~~l----------~~~LavSLha~d~ 249 (373)
T PRK14459 234 EGL----------PVTLAVSLHAPDD 249 (373)
T ss_pred hcC----------CeEEEEEeCCCCH
Confidence 222 1447788777665
No 26
>PRK10824 glutaredoxin-4; Provisional
Probab=24.94 E-value=71 Score=25.96 Aligned_cols=15 Identities=7% Similarity=-0.024 Sum_probs=8.5
Q ss_pred CCcceeeeeeeEEEE
Q 025552 96 LLPLETTRHVSMITI 110 (251)
Q Consensus 96 l~~~~~~R~VS~I~I 110 (251)
|...+-.+.||.|.|
T Consensus 62 l~~~sg~~TVPQIFI 76 (115)
T PRK10824 62 LPKYANWPTFPQLWV 76 (115)
T ss_pred HHHHhCCCCCCeEEE
Confidence 334444566777766
No 27
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.39 E-value=1.4e+02 Score=28.64 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=35.0
Q ss_pred chhHHHHHHHHHHhhC--C---CCeEEEEEcChhHHHHHHHHHHHHHHh--cCcc---ceeEEEEEEec
Q 025552 28 RMRSYITYAMTLLQER--G---SNEIVFKAMGRAINKTVTIVELIKRRI--VGLH---QNTVIGSTDIT 86 (251)
Q Consensus 28 kirnyV~~A~~lL~~~--~---~~~VvIka~G~AIsKAV~vAEILKrRi--~GLh---Q~t~I~sv~i~ 86 (251)
.|...|..+...|.+. + .+.|++.|||...-+.-.|.+.|+.-. .||| -.+.|+|.-+.
T Consensus 134 EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEPLln~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G~~ 202 (354)
T PRK14460 134 EILGQVLVAREHLGDNGPDHPILRNLVFMGMGEPLLNLDEVMRSLRTLNNEKGLNFSPRRITVSTCGIE 202 (354)
T ss_pred HHHHHHHHHHHHHhhccCCCcceeEEEEecCCcccCCHHHHHHHHHHHhhhhccCCCCCeEEEECCCCh
Confidence 3455555555555422 1 689999999987776555666665422 2554 23666665543
No 28
>COG1731 Archaeal riboflavin synthase [Coenzyme metabolism]
Probab=24.11 E-value=85 Score=26.92 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=30.5
Q ss_pred CCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcC
Q 025552 18 ENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMG 54 (251)
Q Consensus 18 ~NeIrVt~k~kirnyV~~A~~lL~~~~~~~VvIka~G 54 (251)
...+|+|-- .|++..-.|.+||++++|+-|+--|+=
T Consensus 31 ~~i~R~TVP-GIKdlpvaakrLieeeGCd~Vi~lG~~ 66 (154)
T COG1731 31 IKIKRYTVP-GIKDLPVAAKRLIEEEGCDIVIALGWV 66 (154)
T ss_pred CceEEeeCC-CcccChHHHHHHHHhcCCcEEEEccCc
Confidence 456788875 599999999999998999999988883
No 29
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.14 E-value=1.7e+02 Score=28.27 Aligned_cols=81 Identities=22% Similarity=0.365 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHh----hCCCCeEEEEEcChhHHH---HHHHHHHHHHH-h-cCc-cceeEEEEEEeccccccc-ccCCC
Q 025552 29 MRSYITYAMTLLQ----ERGSNEIVFKAMGRAINK---TVTIVELIKRR-I-VGL-HQNTVIGSTDITDTWEPL-EEGLL 97 (251)
Q Consensus 29 irnyV~~A~~lL~----~~~~~~VvIka~G~AIsK---AV~vAEILKrR-i-~GL-hQ~t~I~sv~i~d~~ePl-eEgl~ 97 (251)
|-.+|..+...|. +.+...|+|.|||.-..+ .+.++++|+.. . .++ +-.+.|+|.-+....+-+ +++|
T Consensus 154 I~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEPLln~d~v~~~i~~l~~~~~~~~is~r~ItisT~Gl~~~i~~L~~~gl- 232 (368)
T PRK14456 154 ITGQVFALSDMLAERNRERGITNIVFMGMGEPLLNTDNVFEAVLTLSTRKYRFSISQRKITISTVGITPEIDRLATSGL- 232 (368)
T ss_pred HHHHHHHHHHHHHhhhccCCccEEEEeCcCccccCHHHHHHHHHHHhccccccCcCcCeeEEECCCChHHHHHHHHcCC-
Confidence 4444444444442 245899999999954432 44445555543 1 112 223555555443322222 2222
Q ss_pred cceeeeeeeEEEEEEecccCCC
Q 025552 98 PLETTRHVSMITITLSKKELNR 119 (251)
Q Consensus 98 ~~~~~R~VS~I~ItLSk~~LD~ 119 (251)
.+.|.||...+|.
T Consensus 233 ---------~~~LaiSL~a~~~ 245 (368)
T PRK14456 233 ---------KTKLAVSLHSADQ 245 (368)
T ss_pred ---------CceEEEEecCCCH
Confidence 2567777766554
No 30
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=22.66 E-value=2.4e+02 Score=21.41 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHH
Q 025552 32 YITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKR 69 (251)
Q Consensus 32 yV~~A~~lL~~~~~~~VvIka~G~AIsKAV~vAEILKr 69 (251)
.|..+..+|.+ .+.|.|.|.|....-|...+..|+.
T Consensus 2 ~i~~~~~~i~~--~~~i~i~g~g~s~~~a~~~~~~l~~ 37 (139)
T cd05013 2 ALEKAVDLLAK--ARRIYIFGVGSSGLVAEYLAYKLLR 37 (139)
T ss_pred HHHHHHHHHHh--CCEEEEEEcCchHHHHHHHHHHHHH
Confidence 36677777864 6899999999877777777766654
No 31
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=22.64 E-value=1.1e+02 Score=27.08 Aligned_cols=53 Identities=23% Similarity=0.401 Sum_probs=33.3
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHHHHHHhcCccceeEEEEEEecccccccccCCCcceeeeeeeEEEEEEecccCCCCCC
Q 025552 43 RGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELNRSSV 122 (251)
Q Consensus 43 ~~~~~VvIka~G~AIsKAV~vAEILKrRi~GLhQ~t~I~sv~i~d~~ePleEgl~~~~~~R~VS~I~ItLSk~~LD~~~p 122 (251)
++.+.++|-|.= ++-|.+||.|++++..|-+ ++ -.+-.|-|||+++.|..+.+
T Consensus 28 k~~~~~vlvGIk---trGv~lA~rl~~~i~~~Eg------~~------------------vp~g~lDIt~yRDDl~~~~~ 80 (179)
T COG2065 28 KGLDNLVLVGIK---TRGVPLAERLAERIEELEG------IE------------------VPVGELDITLYRDDLTQKGP 80 (179)
T ss_pred CCCCceEEEeEe---cCCHHHHHHHHHHHHHHhC------CC------------------CCeeeEEeEEeechhhhcCc
Confidence 467777777763 3457788888877753211 11 12235899999998876543
No 32
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=22.14 E-value=3.6e+02 Score=26.52 Aligned_cols=107 Identities=22% Similarity=0.281 Sum_probs=54.4
Q ss_pred eEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHHhcCccceeEEEEEEecc-----ccccccc
Q 025552 20 EIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITD-----TWEPLEE 94 (251)
Q Consensus 20 eIrVt~k~kirnyV~~A~~lL~~~~~~~VvIka~G~AIsKAV~vAEILKrRi~GLhQ~t~I~sv~i~d-----~~ePleE 94 (251)
+|+|-.. ...|+++-+++..++||+.|.|--.....+.+.|++.+-.+|.-..-+++-.++- -.+..+.
T Consensus 111 dVriVYS------pldAl~iA~~nP~k~vVF~avGFETTaP~~A~~i~~A~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~ 184 (364)
T PRK15062 111 DVRIVYS------PLDALKIARENPDKEVVFFAIGFETTAPATAATLLQAKAEGLKNFSVLSSHKLVPPAMRALLEDPEL 184 (364)
T ss_pred CEEEEeC------HHHHHHHHHHCCCCeEEEEecCchhccHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHcCCCC
Confidence 4665543 3567787777789999999999665555555555554333332222222222110 0000011
Q ss_pred CCCcceeeeeeeEEEEEEecccCCCCCCCcCCCCCCcCCcc
Q 025552 95 GLLPLETTRHVSMITITLSKKELNRSSVGYQPPLPAEQVKP 135 (251)
Q Consensus 95 gl~~~~~~R~VS~I~ItLSk~~LD~~~pGYQ~Pl~~~~v~~ 135 (251)
.+|-+.-.=|||+|.= .++.+.-..=|+.|.-..-+.|
T Consensus 185 ~idgfi~PGHVstI~G---~~~y~~l~~~y~~P~VVaGFEp 222 (364)
T PRK15062 185 RIDGFIAPGHVSTIIG---TEPYEFLAEEYGIPVVVAGFEP 222 (364)
T ss_pred CccEEEecCEeEEEec---cchhHHHHHHcCCCeEEeccCH
Confidence 2333444557877642 2233332334566655544444
No 33
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=21.81 E-value=1.3e+02 Score=31.44 Aligned_cols=30 Identities=20% Similarity=0.441 Sum_probs=25.7
Q ss_pred HHhhCCCCeEEEEEcChhHHHHHHHHHHHHH
Q 025552 39 LLQERGSNEIVFKAMGRAINKTVTIVELIKR 69 (251)
Q Consensus 39 lL~~~~~~~VvIka~G~AIsKAV~vAEILKr 69 (251)
.|++ ..+.|+|-|.|.++..|+..||.|..
T Consensus 500 vl~~-~~~dV~LiG~Gs~v~~cl~AA~~L~~ 529 (632)
T KOG0523|consen 500 VLQE-VEPDVILIGTGSEVQECLEAAELLSE 529 (632)
T ss_pred EEec-CCCCEEEEeccHHHHHHHHHHHHHHh
Confidence 4543 34899999999999999999999984
No 34
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.49 E-value=2.7e+02 Score=26.74 Aligned_cols=59 Identities=10% Similarity=0.291 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHhhCCCCeEEEEEcChhHHH---HHHHHHHHHHHh-cCc-cceeEEEEEEeccc
Q 025552 29 MRSYITYAMTLLQERGSNEIVFKAMGRAINK---TVTIVELIKRRI-VGL-HQNTVIGSTDITDT 88 (251)
Q Consensus 29 irnyV~~A~~lL~~~~~~~VvIka~G~AIsK---AV~vAEILKrRi-~GL-hQ~t~I~sv~i~d~ 88 (251)
|-.+|..+...|. .....||+.|||.-..+ .+..+.+|+..- .+| +-.++|+|+-+.+.
T Consensus 138 I~~qv~~~~~~~~-~~~~niVFmGmGEPL~N~d~V~~~~~~l~~~~~~~~~~r~itvST~G~~~~ 201 (342)
T PRK14465 138 IVDQVLQVEKIVG-DRATNVVFMGMGEPMHNYFNVIRAASILHDPDAFNLGAKRITISTSGVVNG 201 (342)
T ss_pred HHHHHHHHHHhcC-CCceEEEEEcCCcchhhHHHHHHHHHHHhChhhhcCCCCeEEEeCCCchHH
Confidence 3344444444443 45899999999965544 344445666542 223 33567777655433
No 35
>KOG3212 consensus Uncharacterized conserved protein related to IojAP [Function unknown]
Probab=20.91 E-value=1.8e+02 Score=26.34 Aligned_cols=65 Identities=15% Similarity=0.244 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHhhCCCCeEEE--------------EEcChhHHHHHHHHHHHHHHhcCccc----eeEEEEEEecccccc
Q 025552 30 RSYITYAMTLLQERGSNEIVF--------------KAMGRAINKTVTIVELIKRRIVGLHQ----NTVIGSTDITDTWEP 91 (251)
Q Consensus 30 rnyV~~A~~lL~~~~~~~VvI--------------ka~G~AIsKAV~vAEILKrRi~GLhQ----~t~I~sv~i~d~~eP 91 (251)
..||...++||.+..++.|.+ -+.|..---+-++||-|.++++-+.| .++|.+.+ .+.|..
T Consensus 68 h~~ve~vv~lLrdenadDVfVi~vpeem~y~dh~VIcSgrs~rhl~aiAe~lv~m~Kik~~kgd~hvriegk~-s~dW~v 146 (208)
T KOG3212|consen 68 HLTVEEVVKLLRDENADDVFVIPVPEEMFYADHTVICSGRSDRHLRAIAEALVYMAKIKSQKGDKHVRIEGKQ-SSDWIV 146 (208)
T ss_pred hhhHHHHHHHHHhcccCceEEEeccccceeeeeEEEEecCchHHHHHHHHHHHHHHHHhhcCCCccccccccc-CCCeEE
Confidence 346999999998766655533 37787777788888888777764423 26676665 666776
Q ss_pred cccC
Q 025552 92 LEEG 95 (251)
Q Consensus 92 leEg 95 (251)
.+-|
T Consensus 147 ~D~g 150 (208)
T KOG3212|consen 147 IDYG 150 (208)
T ss_pred EEec
Confidence 6543
No 36
>COG1416 Uncharacterized conserved protein [Function unknown]
Probab=20.66 E-value=1.7e+02 Score=24.11 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=32.1
Q ss_pred eEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHH
Q 025552 20 EIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTV 61 (251)
Q Consensus 20 eIrVt~k~kirnyV~~A~~lL~~~~~~~VvIka~G~AIsKAV 61 (251)
.++|+.-+++.-.|.-+.+||++....+|.+-+-|.||.--.
T Consensus 7 V~hv~~~~k~~~~l~Nl~Nll~~~p~~~IeVV~~g~ai~~l~ 48 (112)
T COG1416 7 VYHVDEESKVNMVLGNLTNLLEDDPSVEIEVVAHGPAIAFLS 48 (112)
T ss_pred EEEeccHHHHHHHHHHHHHHhcCCCCceEEEEEeCchhHHhh
Confidence 467777778888999999999977777777777776665433
Done!