Query 025552
Match_columns 251
No_of_seqs 167 out of 358
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 12:38:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025552.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025552hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h9u_A DNA/RNA-binding protein 99.9 2.5E-26 8.5E-31 181.9 12.5 93 18-118 6-101 (102)
2 1nfj_A ALBA, conserved hypothe 99.9 5.2E-25 1.8E-29 170.3 11.9 86 17-114 2-89 (89)
3 2bky_A DNA/RNA-binding protein 99.9 6.6E-25 2.3E-29 172.3 12.7 89 15-115 6-97 (97)
4 1nh9_A MJA10B, DNA-binding pro 99.9 1.1E-24 3.9E-29 167.8 11.3 84 18-114 2-87 (87)
5 3toe_A MTH10B, DNA/RNA-binding 99.9 6.8E-23 2.3E-27 159.2 11.5 89 17-115 3-91 (91)
6 2bky_X DNA/RNA-binding protein 99.9 3.6E-21 1.2E-25 149.0 11.7 84 17-115 5-88 (89)
7 1vm0_A Unknown protein; struct 99.8 7.7E-19 2.6E-23 144.2 10.3 91 15-116 17-108 (130)
8 3iab_B Ribonucleases P/MRP pro 99.7 1.7E-16 5.6E-21 131.6 13.1 108 5-113 13-139 (140)
9 3iab_A Ribonucleases P/MRP pro 98.2 1.7E-05 6E-10 66.7 12.2 91 21-116 47-146 (158)
10 1b34_A Protein (small nuclear 83.0 0.24 8.2E-06 39.2 0.0 8 103-110 53-60 (119)
11 2ek0_A Stage V sporulation pro 73.2 28 0.00097 26.5 11.4 51 19-71 2-53 (90)
12 2k9u_B Filamin-binding LIM pro 40.0 12 0.00042 22.2 1.3 14 101-114 6-19 (26)
13 1tig_A IF3-C, translation init 33.6 1.3E+02 0.0046 22.6 6.7 56 17-72 6-64 (94)
14 1i96_V Translation initiation 33.5 1.4E+02 0.0047 22.3 6.7 53 20-72 4-59 (89)
15 2crq_A Mitochondrial translati 30.3 1.6E+02 0.0053 22.9 6.8 43 15-58 12-57 (112)
16 3pam_A Transmembrane protein; 24.1 1.7E+02 0.0058 24.0 6.4 52 32-86 101-166 (259)
17 1qys_A TOP7; alpha-beta, novel 21.7 1.9E+02 0.0064 21.7 5.5 55 20-74 20-74 (106)
18 1lxn_A Hypothetical protein MT 21.0 61 0.0021 24.4 2.7 49 27-76 16-66 (99)
No 1
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=99.94 E-value=2.5e-26 Score=181.87 Aligned_cols=93 Identities=34% Similarity=0.538 Sum_probs=85.0
Q ss_pred CCeEEEcCCCchhHHHHHHH-HHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHHh-cCcc-ceeEEEEEEeccccccccc
Q 025552 18 ENEIRITSQGRMRSYITYAM-TLLQERGSNEIVFKAMGRAINKTVTIVELIKRRI-VGLH-QNTVIGSTDITDTWEPLEE 94 (251)
Q Consensus 18 ~NeIrVt~k~kirnyV~~A~-~lL~~~~~~~VvIka~G~AIsKAV~vAEILKrRi-~GLh-Q~t~I~sv~i~d~~ePleE 94 (251)
+|+|+|++++ .+|||.+|+ .||+ +++++|+|||+|+||+|||+||||||+|| ++|| |.++|+|.++.|+|| +
T Consensus 6 ~n~I~V~~k~-~~nyV~~a~~~ll~-~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e---~ 80 (102)
T 2h9u_A 6 APEVRIGRKP-VMNYVLAILTTLME-QGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTP---E 80 (102)
T ss_dssp CCEEECCSSC-HHHHHHHHHHHHTS-TTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECT---T
T ss_pred CCEEEEcCCC-HHHHHHHHHHHHHh-CCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEecccc---C
Confidence 5999999996 489999999 9998 68999999999999999999999999999 7999 999999999999854 5
Q ss_pred CCCcceeeeeeeEEEEEEecccCC
Q 025552 95 GLLPLETTRHVSMITITLSKKELN 118 (251)
Q Consensus 95 gl~~~~~~R~VS~I~ItLSk~~LD 118 (251)
|+ .++|+||+|+|+|+++|..
T Consensus 81 g~---~~~r~vS~IeI~Lsk~~~~ 101 (102)
T 2h9u_A 81 GQ---TRTRRVSSIEICLEKAGES 101 (102)
T ss_dssp SC---EEEEEEEEEEEEEEECSSC
T ss_pred Cc---cceeEeeeEEEEEEccCCC
Confidence 54 3789999999999998764
No 2
>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*
Probab=99.92 E-value=5.2e-25 Score=170.32 Aligned_cols=86 Identities=30% Similarity=0.575 Sum_probs=78.8
Q ss_pred CCCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHHh-cCcc-ceeEEEEEEeccccccccc
Q 025552 17 DENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRI-VGLH-QNTVIGSTDITDTWEPLEE 94 (251)
Q Consensus 17 ~~NeIrVt~k~kirnyV~~A~~lL~~~~~~~VvIka~G~AIsKAV~vAEILKrRi-~GLh-Q~t~I~sv~i~d~~ePleE 94 (251)
++|+|+|++++ +++||.+|+.||+ +++++|+|||+|+||+|||+||||||+|| ++|| |.++|+|.++.| ++
T Consensus 2 ~~n~I~V~~k~-v~~yV~~~~~~l~-~g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~-----e~ 74 (89)
T 1nfj_A 2 AEHVVYVGNKP-VMNYVLATLTQLN-EGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELES-----EQ 74 (89)
T ss_dssp -CEEEECCSSC-HHHHHHHHHHHHH-TTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCC-----BT
T ss_pred CCCEEEEcCCC-HHHHHHHHHHHHh-CCCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEc-----CC
Confidence 68999999986 9999999999999 68999999999999999999999999999 8899 999999998876 34
Q ss_pred CCCcceeeeeeeEEEEEEec
Q 025552 95 GLLPLETTRHVSMITITLSK 114 (251)
Q Consensus 95 gl~~~~~~R~VS~I~ItLSk 114 (251)
| .+|+||+|+|+|++
T Consensus 75 g-----~~r~vs~IeI~L~k 89 (89)
T 1nfj_A 75 G-----RRSNVSTIEIVLAK 89 (89)
T ss_dssp T-----BCCEEEEEEEEEEC
T ss_pred C-----cEEEeeEEEEEEEC
Confidence 4 68999999999986
No 3
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A
Probab=99.92 E-value=6.6e-25 Score=172.26 Aligned_cols=89 Identities=37% Similarity=0.588 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHHhcC--c-cceeEEEEEEecccccc
Q 025552 15 PIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVG--L-HQNTVIGSTDITDTWEP 91 (251)
Q Consensus 15 p~~~NeIrVt~k~kirnyV~~A~~lL~~~~~~~VvIka~G~AIsKAV~vAEILKrRi~G--L-hQ~t~I~sv~i~d~~eP 91 (251)
+.++|+|+|++++ +++||.+|+.||+ +++++|+|||+|+||+|||+||||||+||.+ | ||.++|+|.++.|
T Consensus 6 ~~~~n~I~V~~k~-v~~YV~~a~~ll~-~g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~---- 79 (97)
T 2bky_A 6 PTPSNVVLIGKKP-VMNYVLAALTLLN-QGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTS---- 79 (97)
T ss_dssp ---CCEEECCSSC-HHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEE----
T ss_pred CCCCCEEEEcCcC-HHHHHHHHHHHHh-CCCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEec----
Confidence 5678999999997 9999999999999 6899999999999999999999999999965 8 8999999999887
Q ss_pred cccCCCcceeeeeeeEEEEEEecc
Q 025552 92 LEEGLLPLETTRHVSMITITLSKK 115 (251)
Q Consensus 92 leEgl~~~~~~R~VS~I~ItLSk~ 115 (251)
||| .+|+||+|+|+|+++
T Consensus 80 -e~G-----~~r~vS~IeI~L~k~ 97 (97)
T 2bky_A 80 -QDG-----RQSRVSTIEIAIRKK 97 (97)
T ss_dssp -TTS-----CEEEEEEEEEEEEEC
T ss_pred -CCC-----cEEEeeEEEEEEEcC
Confidence 344 789999999999974
No 4
>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1
Probab=99.92 E-value=1.1e-24 Score=167.78 Aligned_cols=84 Identities=31% Similarity=0.564 Sum_probs=73.5
Q ss_pred CCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHHh-cCcc-ceeEEEEEEecccccccccC
Q 025552 18 ENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRI-VGLH-QNTVIGSTDITDTWEPLEEG 95 (251)
Q Consensus 18 ~NeIrVt~k~kirnyV~~A~~lL~~~~~~~VvIka~G~AIsKAV~vAEILKrRi-~GLh-Q~t~I~sv~i~d~~ePleEg 95 (251)
+|+|+|+++ ++++||.+|+.||++ + ++|+|||+|+||+|||+||||||+|| ++|| |.++|+|.++.|+ +|
T Consensus 2 ~n~I~V~~k-~v~~YV~~~~~~l~~-g-~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~e-----~g 73 (87)
T 1nh9_A 2 DNVVLIGKK-PVMNYVVAVLTQLTS-N-DEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKNP-----DG 73 (87)
T ss_dssp CSEEEECSS-CHHHHHHHHHHHHHH-C-SEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC-----------
T ss_pred CCEEEEeCc-chHHHHHHHHHHhcC-C-CEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEcC-----CC
Confidence 699999999 999999999999995 6 99999999999999999999999999 7799 9999999988873 34
Q ss_pred CCcceeeeeeeEEEEEEec
Q 025552 96 LLPLETTRHVSMITITLSK 114 (251)
Q Consensus 96 l~~~~~~R~VS~I~ItLSk 114 (251)
.+|+||+|+|+|++
T Consensus 74 -----~~r~vS~IeI~L~k 87 (87)
T 1nh9_A 74 -----REVNVSTIEIVLAK 87 (87)
T ss_dssp ------CCCEEEEEEEEEC
T ss_pred -----cEEEeeEEEEEEEC
Confidence 67999999999986
No 5
>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.89 E-value=6.8e-23 Score=159.20 Aligned_cols=89 Identities=30% Similarity=0.479 Sum_probs=81.2
Q ss_pred CCCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHHhcCccceeEEEEEEecccccccccCC
Q 025552 17 DENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGL 96 (251)
Q Consensus 17 ~~NeIrVt~k~kirnyV~~A~~lL~~~~~~~VvIka~G~AIsKAV~vAEILKrRi~GLhQ~t~I~sv~i~d~~ePleEgl 96 (251)
++|.|+|.++ +++|||.+|+.+|+ +++++|+|||+|+||+|||++|||||+||. +.++++++++.++|.+.++|
T Consensus 3 ~~~vv~vg~K-pv~~YV~~~i~~~n-~g~~eV~ikA~G~aIskAVdvaei~k~R~~---~~v~v~~I~I~se~~~~e~G- 76 (91)
T 3toe_A 3 EENVVYIGNK-PVMNYVLAVVTQMN-GGTSEVILKARGIAISRAVDVAEIVRNRFI---PDIQIENIDICTEEIIGNEG- 76 (91)
T ss_dssp --CCEECCSS-CHHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHHHHTC---TTCEEEEEEEEEEEEECTTS-
T ss_pred ccCEEEECCC-cHHHHHHHHHHHHh-CCCCEEEEEEehhHHHHHHHHHHHHHHhcc---CCcEEEEEEeeeEEeecCCC-
Confidence 4789999997 79999999999999 689999999999999999999999999997 46899999999999999887
Q ss_pred CcceeeeeeeEEEEEEecc
Q 025552 97 LPLETTRHVSMITITLSKK 115 (251)
Q Consensus 97 ~~~~~~R~VS~I~ItLSk~ 115 (251)
.+|+||+|+|+|+++
T Consensus 77 ----~~r~VS~IeI~L~k~ 91 (91)
T 3toe_A 77 ----TATNVSAIEIQLRKD 91 (91)
T ss_dssp ----SEEEEEEEEEEEEC-
T ss_pred ----ceeEeeEEEEEEECC
Confidence 789999999999985
No 6
>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A
Probab=99.85 E-value=3.6e-21 Score=148.97 Aligned_cols=84 Identities=19% Similarity=0.292 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHHhcCccceeEEEEEEecccccccccCC
Q 025552 17 DENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGL 96 (251)
Q Consensus 17 ~~NeIrVt~k~kirnyV~~A~~lL~~~~~~~VvIka~G~AIsKAV~vAEILKrRi~GLhQ~t~I~sv~i~d~~ePleEgl 96 (251)
++|.|+|+++ +++|||.+|+.||+ +++++|+|||+|+||+|||+||||||+||.++||+.+ +++..+ +
T Consensus 5 ~~~iv~vg~k-pv~nYV~~~~~~ln-~g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~i~~---i~i~se-----~-- 72 (89)
T 2bky_X 5 LNEIVVRKTK-NVEDHVLDVIVLFN-QGIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVN---VQTGSE-----V-- 72 (89)
T ss_dssp CEEEECCTTS-CHHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEE---EEEEEE-----E--
T ss_pred CCCEEEECCC-CHHHHHHHHHHHHh-CCCCEEEEEEechHHHHHHHHHHHHHHhccCceEEEE---EEeccc-----c--
Confidence 4567777766 89999999999999 6899999999999999999999999999997766543 333322 1
Q ss_pred CcceeeeeeeEEEEEEecc
Q 025552 97 LPLETTRHVSMITITLSKK 115 (251)
Q Consensus 97 ~~~~~~R~VS~I~ItLSk~ 115 (251)
..+|+||+|+|+|+++
T Consensus 73 ---~~~r~VS~IeI~L~k~ 88 (89)
T 2bky_X 73 ---RDRRRISYILLRLKRV 88 (89)
T ss_dssp ---ETTEEEEEEEEEEEEC
T ss_pred ---CcceEeeeEEEEEEec
Confidence 4679999999999974
No 7
>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A
Probab=99.78 E-value=7.7e-19 Score=144.17 Aligned_cols=91 Identities=25% Similarity=0.375 Sum_probs=73.6
Q ss_pred CCCCCeEEEcC-CCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHHhcCccceeEEEEEEecccccccc
Q 025552 15 PIDENEIRITS-QGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLE 93 (251)
Q Consensus 15 p~~~NeIrVt~-k~kirnyV~~A~~lL~~~~~~~VvIka~G~AIsKAV~vAEILKrRi~GLhQ~t~I~sv~i~d~~ePle 93 (251)
+.++|+|+|+. +.++++||.+|+.+|+ ++++|+|||||+||++||+||||||+|+...++.+.|++.++.++
T Consensus 17 ~~~~N~I~Vs~~kkP~~nYV~~a~~~l~--g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI~t~t~~i~~~----- 89 (130)
T 1vm0_A 17 SQKKNRIQVSNTKKPLFFYVNLAKRYMQ--QYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDD----- 89 (130)
T ss_dssp --CTTEEECCCTTSCHHHHHHHHHHHHH--HHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC-------
T ss_pred CCCCCEEEEecCCCCceeHHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEEEeeeEEeccC-----
Confidence 45799999997 4789999999999998 589999999999999999999999999876677777788877653
Q ss_pred cCCCcceeeeeeeEEEEEEeccc
Q 025552 94 EGLLPLETTRHVSMITITLSKKE 116 (251)
Q Consensus 94 Egl~~~~~~R~VS~I~ItLSk~~ 116 (251)
+ -....++|.|+|+|++.+
T Consensus 90 ~----~~r~v~~skIEI~L~k~~ 108 (130)
T 1vm0_A 90 A----RGRPVQKAKIEITLVKSE 108 (130)
T ss_dssp --------CEEEEEEEEEEEECT
T ss_pred C----CCcccccceEEEEEEecC
Confidence 1 124456799999999864
No 8
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.7e-16 Score=131.64 Aligned_cols=108 Identities=17% Similarity=0.178 Sum_probs=86.3
Q ss_pred eeccCCCCCCCCC----CCeEEEcCCCchhHHHHHHHHHHhh---CCCCeEEEEEcChhHHHHHHHHHHHHHHhcCccce
Q 025552 5 QRVEKPKAETPID----ENEIRITSQGRMRSYITYAMTLLQE---RGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQN 77 (251)
Q Consensus 5 ~rV~kp~~~~p~~----~NeIrVt~k~kirnyV~~A~~lL~~---~~~~~VvIka~G~AIsKAV~vAEILKrRi~GLhQ~ 77 (251)
+.|.++.+..|.. +|+|+|+++++|.+.|..|.+||+. .+.++|+|||||+||+||++||..|+++. +|.-.
T Consensus 13 k~irk~P~~k~~s~~~~~~~iYV~skTpf~S~vkRi~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq~~~-~~~V~ 91 (140)
T 3iab_B 13 KRVTKHPSLKTLTHKQIHTTIFVKSTTPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQK-NKKIE 91 (140)
T ss_dssp -CCEECCCCCCCCHHHHTTEEECCSSCCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHHHTT-CCCEE
T ss_pred CccCCCCCCcCccccccCceEEEecCCchHHHHHHHHHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHhhcC-CEEEE
Confidence 4455544444544 8999999999999999999999984 16899999999999999999999999874 56667
Q ss_pred eEEEEEEecccccccccC------------CCcceeeeeeeEEEEEEe
Q 025552 78 TVIGSTDITDTWEPLEEG------------LLPLETTRHVSMITITLS 113 (251)
Q Consensus 78 t~I~sv~i~d~~ePleEg------------l~~~~~~R~VS~I~ItLS 113 (251)
+.++||.+.|+++|.++. .++...+|+||+|||.++
T Consensus 92 V~T~TV~vvDd~~~~~~~~~~~d~~~~d~d~e~~~rkR~vS~VeirIy 139 (140)
T 3iab_B 92 VYTKTIEVLDEVITEGQADIDMESDVEDDDKETQLKKRAVSGVELRIY 139 (140)
T ss_dssp EEEEEEEEEEECC--------------------CEEEEEEEEEEEEEE
T ss_pred EEeceEEEEEeeeecCCcccccccccccccccchheeeeeeeEEEEEe
Confidence 999999999999998765 578899999999999986
No 9
>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=98.21 E-value=1.7e-05 Score=66.66 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=71.2
Q ss_pred EEEcCCCchhHHHHHHHHHHhh-----CCCCeEEEEEcChhHHHHHHHHHHHHHHh----cCccceeEEEEEEecccccc
Q 025552 21 IRITSQGRMRSYITYAMTLLQE-----RGSNEIVFKAMGRAINKTVTIVELIKRRI----VGLHQNTVIGSTDITDTWEP 91 (251)
Q Consensus 21 IrVt~k~kirnyV~~A~~lL~~-----~~~~~VvIka~G~AIsKAV~vAEILKrRi----~GLhQ~t~I~sv~i~d~~eP 91 (251)
+.|+++..|...|..-.++|+. ...+.|.|.+.|..|.|++++.||+|..+ ..|||++++.+......
T Consensus 47 ~kIsKNDnIK~~V~kL~~~l~~~~~s~~~~~~V~l~syg~hIQKmLSIvEI~Kk~~~~~~~~l~Q~NkL~~f~~v~~--- 123 (158)
T 3iab_A 47 HGISKNDNIKKSVNKLDKQINMADRSLGLQQVVCIFSYGPHIQKMLSILEIFKKGYIKNNKKIYQWNKLTSFDIKRE--- 123 (158)
T ss_dssp EECCTTCCHHHHHHHHHHHHTCSCTTTTCEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEEC-----
T ss_pred EEeccCchHHHHHHHHHHHHhhhccccccCceEEEEecChHHHHHHHHHHHHHHHhhcCCccHHHHhhhhhhccCCc---
Confidence 4599999999999999888841 24689999999999999999999999988 34999999998865432
Q ss_pred cccCCCcceeeeeeeEEEEEEeccc
Q 025552 92 LEEGLLPLETTRHVSMITITLSKKE 116 (251)
Q Consensus 92 leEgl~~~~~~R~VS~I~ItLSk~~ 116 (251)
.-. +-++.+-+||-+-+.+++.+
T Consensus 124 grN--ELle~r~~vPILi~~i~~~~ 146 (158)
T 3iab_A 124 GRN--ELQEERLKVPILVTMVSDSE 146 (158)
T ss_dssp -------CCCCEEEEEEEEEEESSS
T ss_pred ccc--HHHHhhcCCCEEEEEEeccc
Confidence 111 23556678999888888865
No 10
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=82.99 E-value=0.24 Score=39.24 Aligned_cols=8 Identities=13% Similarity=0.372 Sum_probs=3.4
Q ss_pred eeeeEEEE
Q 025552 103 RHVSMITI 110 (251)
Q Consensus 103 R~VS~I~I 110 (251)
+++..|.|
T Consensus 53 ~~lg~v~I 60 (119)
T 1b34_A 53 VQLETLSI 60 (119)
T ss_dssp EEEEEEEE
T ss_pred eEcceEEE
Confidence 34444443
No 11
>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A
Probab=73.22 E-value=28 Score=26.49 Aligned_cols=51 Identities=24% Similarity=0.438 Sum_probs=38.6
Q ss_pred CeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcC-hhHHHHHHHHHHHHHHh
Q 025552 19 NEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMG-RAINKTVTIVELIKRRI 71 (251)
Q Consensus 19 NeIrVt~k~kirnyV~~A~~lL~~~~~~~VvIka~G-~AIsKAV~vAEILKrRi 71 (251)
+.+.|.++++..+.-..-..+|.+ ...|.|.++| .|++.||.-.-|-+.=+
T Consensus 2 e~LKVSs~S~P~~VAGAIA~~lRe--~~~veiqAIGa~AvNqAVKAIAIARg~l 53 (90)
T 2ek0_A 2 ETLRVSSKSRPNSVAGAIAAMLRT--KGEVEVQAIGPQAVNQAVKAIAIARGYI 53 (90)
T ss_dssp CEEEECTTCCHHHHHHHHHHHHHH--HSEEEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEcCCCChHHHHHHHHHHHhc--CCceEEEEECHHHHHHHHHHHHHHHHhh
Confidence 468899998877776666667876 3699999999 78888887666555444
No 12
>2k9u_B Filamin-binding LIM protein 1; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=39.97 E-value=12 Score=22.24 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=11.9
Q ss_pred eeeeeeEEEEEEec
Q 025552 101 TTRHVSMITITLSK 114 (251)
Q Consensus 101 ~~R~VS~I~ItLSk 114 (251)
.+|.+|+|.|||..
T Consensus 6 eKR~aSSvFITLap 19 (26)
T 2k9u_B 6 EKRVASSVFITLAP 19 (26)
T ss_dssp SSSCEEEEEEEECC
T ss_pred hhheeeeEEEEecC
Confidence 36899999999975
No 13
>1tig_A IF3-C, translation initiation factor 3; IF3 C-terminal domain, ribosome binding factor; 2.00A {Geobacillus stearothermophilus} SCOP: d.68.1.1
Probab=33.56 E-value=1.3e+02 Score=22.56 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=38.6
Q ss_pred CCCeEEEcCCCchhHH---HHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHHhc
Q 025552 17 DENEIRITSQGRMRSY---ITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIV 72 (251)
Q Consensus 17 ~~NeIrVt~k~kirny---V~~A~~lL~~~~~~~VvIka~G~AIsKAV~vAEILKrRi~ 72 (251)
.--||+++.+..-..| +..|..+|++...=.|+|+-.|+.|...=.-.++|.+-..
T Consensus 6 ~vKEikl~p~Id~hD~~~K~k~a~~FL~~GdKVKvti~fRGRE~~h~e~g~~lL~r~~~ 64 (94)
T 1tig_A 6 NVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDRLSE 64 (94)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHHHHTTCEEEEEEECCSCCTTHHHHHHHHHHHHHH
T ss_pred eeEEEEecCCcCcchHHHHHHHHHHHHHCCCEEEEEEEECCccccCHHHHHHHHHHHHH
Confidence 4458899888666666 6677888987666678888889988765444444544333
No 14
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=33.54 E-value=1.4e+02 Score=22.30 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=34.0
Q ss_pred eEEEcCCCchhHH---HHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHHhc
Q 025552 20 EIRITSQGRMRSY---ITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIV 72 (251)
Q Consensus 20 eIrVt~k~kirny---V~~A~~lL~~~~~~~VvIka~G~AIsKAV~vAEILKrRi~ 72 (251)
||+++.+..-..| +..|..+|++...=.|+|+=.|+.|...=.-.++|.+-..
T Consensus 4 Eikl~p~Id~hD~~~K~k~a~~FL~~GdKVKvti~fRGRE~~h~e~g~~lL~r~~~ 59 (89)
T 1i96_V 4 SIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTE 59 (89)
T ss_pred EEEecCCcCcchHHHHHHHHHHHHHCCCEEEEEEEECCccccCHHHHHHHHHHHHH
Confidence 5666665444443 6778889987666778888889988754444445544333
No 15
>2crq_A Mitochondrial translational initiation factor 3; ribosome, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.31 E-value=1.6e+02 Score=22.89 Aligned_cols=43 Identities=9% Similarity=0.111 Sum_probs=33.5
Q ss_pred CCCCCeEEEcCCCchhHH---HHHHHHHHhhCCCCeEEEEEcChhHH
Q 025552 15 PIDENEIRITSQGRMRSY---ITYAMTLLQERGSNEIVFKAMGRAIN 58 (251)
Q Consensus 15 p~~~NeIrVt~k~kirny---V~~A~~lL~~~~~~~VvIka~G~AIs 58 (251)
.+.--||+++.+..-..| +..|..+|++...=.|+|+ .|+.|+
T Consensus 12 ~~~vKEIrl~p~Id~HDl~~K~k~a~kFLe~GdKVKvti~-RGRE~~ 57 (112)
T 2crq_A 12 PTMTKELVFSSNIGQHDLDTKSKQIQQWIEKKYHVQVTIK-RRKDAE 57 (112)
T ss_dssp CSCEEEEEEETTCCHHHHHHHHHHHHHHHHTTCEEEEEEE-CCTTCS
T ss_pred CceeEEEEecCCcccchHHHHHHHHHHHHHCCCEEEEEEE-CCcccc
Confidence 445569999998766666 6677888987666788899 999987
No 16
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=24.07 E-value=1.7e+02 Score=24.01 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhCCCC--------------eEEEEEcChhHHHHHHHHHHHHHHhcCccceeEEEEEEec
Q 025552 32 YITYAMTLLQERGSN--------------EIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDIT 86 (251)
Q Consensus 32 yV~~A~~lL~~~~~~--------------~VvIka~G~AIsKAV~vAEILKrRi~GLhQ~t~I~sv~i~ 86 (251)
=+..|.+||.+.+.+ +|.|.... .....+||+|+..+..+--.++|..++..
T Consensus 101 d~~kAk~LL~eaG~~~~~~g~~~~~G~~l~l~~~~~~---~~~~~~a~~iq~~l~~iGI~v~i~~~~~~ 166 (259)
T 3pam_A 101 NAQKAWKLLQEAGFTKKNNRLIAPNGLPFQFEIMTQS---LEEEKVALAFQSNLSRLGIHAEIRTVDDS 166 (259)
T ss_dssp HHHHHHHHHHHTTCEEETTEEECTTSCBCEEEEEESS---HHHHHHHHHHHHHHHTTTCEEEEEECCHH
T ss_pred CHHHHHHHHHHcCCccCCCcEECCCCcEEEEEEEeCC---chHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 478999999875543 45555432 44567888888887654444666655443
No 17
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=21.72 E-value=1.9e+02 Score=21.73 Aligned_cols=55 Identities=9% Similarity=0.283 Sum_probs=46.3
Q ss_pred eEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHHhcCc
Q 025552 20 EIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGL 74 (251)
Q Consensus 20 eIrVt~k~kirnyV~~A~~lL~~~~~~~VvIka~G~AIsKAV~vAEILKrRi~GL 74 (251)
.-.||..+.+...+...+..+.+++.+.|.|+=.-+.-..|-..|-||-.-|..|
T Consensus 20 tytvtteselqkvlnelmdyikkqgakrvrisitartkkeaekfaailikvfael 74 (106)
T 1qys_A 20 TYTVTTESELQKVLNELMDYIKKQGAKRVRISITARTKKEAEKFAAILIKVFAEL 74 (106)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeeHHHHHHHHHHHHHHHHhcCCcEEEEEEEecchhHHHHHHHHHHHHHHHh
Confidence 4568888889999999999888889999999888888788888999998887654
No 18
>1lxn_A Hypothetical protein MTH1187; hypothetical structure, structural genomics, PSI, protein ST initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.48.1
Probab=21.05 E-value=61 Score=24.38 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=34.1
Q ss_pred CchhHHHHHHHHHHhhCCCCeEEEEEcChhHHH--HHHHHHHHHHHhcCccc
Q 025552 27 GRMRSYITYAMTLLQERGSNEIVFKAMGRAINK--TVTIVELIKRRIVGLHQ 76 (251)
Q Consensus 27 ~kirnyV~~A~~lL~~~~~~~VvIka~G~AIsK--AV~vAEILKrRi~GLhQ 76 (251)
..+..||..|+++|++.+. ...+.+||..|.= .=.|-++||+-+.-+|+
T Consensus 16 ~svs~~Va~~i~~i~~sgl-~y~~~pm~T~iEG~e~devm~vv~~~~e~~~~ 66 (99)
T 1lxn_A 16 TSLSSYVAAAVEALKKLNV-RYEISGMGTLLEAEDLDELMEAVKAAHEAVLQ 66 (99)
T ss_dssp SCCHHHHHHHHHHHTTSSC-EEEEETTEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCC-CeEeCCCeeEEECCCHHHHHHHHHHHHHHHHH
Confidence 4799999999999986444 4588888866652 44555666665544554
Done!