Query 025554
Match_columns 251
No_of_seqs 139 out of 1340
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:01:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 1.7E-41 3.7E-46 299.9 24.3 209 30-244 63-289 (365)
2 KOG0698 Serine/threonine prote 100.0 1.8E-39 3.9E-44 285.2 23.9 215 31-247 38-266 (330)
3 PF00481 PP2C: Protein phospha 100.0 2.3E-40 4.9E-45 281.7 16.2 211 33-248 1-225 (254)
4 KOG0697 Protein phosphatase 1B 100.0 1.9E-39 4E-44 267.0 15.4 212 26-243 16-249 (379)
5 COG0631 PTC1 Serine/threonine 100.0 7.9E-38 1.7E-42 266.6 20.4 207 29-248 5-219 (262)
6 PTZ00224 protein phosphatase 2 100.0 4.1E-37 9E-42 273.0 24.6 203 28-246 18-232 (381)
7 smart00332 PP2Cc Serine/threon 100.0 1E-32 2.3E-37 233.8 24.4 208 31-247 5-221 (255)
8 cd00143 PP2Cc Serine/threonine 100.0 9.9E-33 2.1E-37 233.3 23.3 208 32-246 1-217 (254)
9 KOG0700 Protein phosphatase 2C 100.0 2.9E-33 6.4E-38 242.4 15.9 201 46-248 84-354 (390)
10 PRK14559 putative protein seri 100.0 4.7E-32 1E-36 253.2 21.9 199 31-240 374-591 (645)
11 KOG0699 Serine/threonine prote 100.0 5.2E-32 1.1E-36 230.3 14.5 117 125-245 330-457 (542)
12 KOG1323 Serine/threonine phosp 99.9 2.5E-24 5.5E-29 181.8 14.0 186 61-246 142-430 (493)
13 PF13672 PP2C_2: Protein phosp 99.9 1.9E-21 4.2E-26 160.8 12.9 178 37-249 3-192 (212)
14 KOG1379 Serine/threonine prote 99.9 3.2E-20 7E-25 156.6 16.5 172 46-248 90-270 (330)
15 KOG0618 Serine/threonine phosp 99.8 2.1E-18 4.6E-23 162.7 10.6 216 22-246 512-737 (1081)
16 smart00331 PP2C_SIG Sigma fact 99.7 5.9E-16 1.3E-20 126.1 19.7 159 33-241 5-166 (193)
17 TIGR02865 spore_II_E stage II 99.3 1.3E-10 2.9E-15 112.5 17.0 146 46-240 566-713 (764)
18 PF07228 SpoIIE: Stage II spor 99.1 1.9E-09 4.1E-14 87.4 14.1 134 62-240 3-140 (193)
19 COG2208 RsbU Serine phosphatas 97.4 0.0059 1.3E-07 54.7 13.8 129 62-238 174-310 (367)
20 PRK10693 response regulator of 87.2 11 0.00024 32.7 11.3 91 63-157 163-259 (303)
21 PF09436 DUF2016: Domain of un 66.7 3.6 7.7E-05 27.8 1.4 21 220-240 23-43 (72)
22 COG2168 DsrH Uncharacterized c 39.0 26 0.00057 25.0 2.1 27 223-249 24-50 (96)
23 PF01436 NHL: NHL repeat; Int 25.3 1.2E+02 0.0025 16.0 3.7 19 134-152 10-28 (28)
24 COG0416 PlsX Fatty acid/phosph 21.2 3.5E+02 0.0076 24.1 6.4 30 63-92 222-254 (338)
25 cd06409 PB1_MUG70 The MUG70 pr 21.0 95 0.0021 21.7 2.4 19 215-233 44-62 (86)
26 TIGR02276 beta_rpt_yvtn 40-res 20.6 1.7E+02 0.0037 16.2 3.3 18 136-153 3-20 (42)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=1.7e-41 Score=299.93 Aligned_cols=209 Identities=32% Similarity=0.479 Sum_probs=176.4
Q ss_pred CCceEEEEeecCCCCCCCCceEEEEeee--------cCCCceEEEEEEcCCCChHHHHHHHHHHHHHHHhcccCCCCHHH
Q 025554 30 GLVKFGFSLVKGKANHPMEDYHVAKFVQ--------LQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQR 101 (251)
Q Consensus 30 ~~~~~~~~s~~G~~~~~neD~~~~~~~~--------~~~~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~~~~~~~~~~ 101 (251)
+.++++.++++|.|+ .|||++++.... .......+|+|||||||+.+++++++.+.+.+.+.......+.+
T Consensus 63 ~~~~~~~~s~~G~R~-~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~ 141 (365)
T PLN03145 63 PVVRSGAWADIGSRS-SMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEK 141 (365)
T ss_pred CceEEEEEccccCCC-CCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 456899999999876 999998763221 11234689999999999999999999999998876655557788
Q ss_pred HHHHHHHHHHHHHHhccCC-CCCCCcceEEEEEEeCCeEEEEEecCceeEEeeCCceEecCCCCCCC--chHHHHHHcCC
Q 025554 102 SISKAYEKTDQAILSHSSD-LGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPN--TERGSIEDKGG 178 (251)
Q Consensus 102 ~l~~~~~~~~~~l~~~~~~-~~~~~~tt~~~~~i~~~~l~ianvGDsr~~l~r~g~~~~lt~dh~~~--~e~~ri~~~g~ 178 (251)
+|+++|..+|+.+.+.... ....+|||++++++.++.+|++||||||+|++|++++++||+||++. .|++||.+.||
T Consensus 142 al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg 221 (365)
T PLN03145 142 VVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGG 221 (365)
T ss_pred HHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCC
Confidence 9999999999998764322 23458899999999999999999999999999999999999999998 78899999999
Q ss_pred eeecCCCCCCCcCCcccccccccCcCCCC-------CceecceEEEEEecCCCeEEEEEcCCCCCCCCCHHHH
Q 025554 179 FVSNMPGDVPRVNGQLAVSRAFGDKSLKS-------HLRSDPDIQNTILDGRSDVLVLASDGLWKVSYFFLNF 244 (251)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ltr~lG~~~~k~-------~v~~~p~v~~~~l~~~~d~lil~SDGl~d~l~~~~~~ 244 (251)
.+.. .+.++.+.+||+||+..+|. .++++|++..+++.++++|||||||||||+|++++++
T Consensus 222 ~v~~-----g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v 289 (365)
T PLN03145 222 YVYD-----GYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAV 289 (365)
T ss_pred ceec-----ceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHH
Confidence 8863 46777788999999987753 4789999999999986678889999999999998864
No 2
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-39 Score=285.23 Aligned_cols=215 Identities=42% Similarity=0.642 Sum_probs=182.8
Q ss_pred Cce-EEEEeecCCCCCCCCceEEEEeee----cCCC-ceEEEEEEcCCCChHHHHHHHHHHHHHHHhcccCCCC---HHH
Q 025554 31 LVK-FGFSLVKGKANHPMEDYHVAKFVQ----LQGH-ELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVD---PQR 101 (251)
Q Consensus 31 ~~~-~~~~s~~G~~~~~neD~~~~~~~~----~~~~-~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~~~~~~~---~~~ 101 (251)
.+. .+..+.+|.++ .+||++.+.... ..+. ...+|||||||||+.+|+|+.++|...+.+....... .++
T Consensus 38 ~~~~~~~~~~~~~r~-~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~ 116 (330)
T KOG0698|consen 38 SYRLGSLLSIRGRRR-KMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKD 116 (330)
T ss_pred cccceEEEecCCCCC-ccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHH
Confidence 344 44557778777 899999764442 2333 5899999999999999999999999999988877664 799
Q ss_pred HHHHHHH-HHHHHHHhccCCCCCCCcceEEEEEEeCCeEEEEEecCceeEEeeCC-ceEecCCCCCCC--chHHHHHHcC
Q 025554 102 SISKAYE-KTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAG-VAVQMTTDHEPN--TERGSIEDKG 177 (251)
Q Consensus 102 ~l~~~~~-~~~~~l~~~~~~~~~~~~tt~~~~~i~~~~l~ianvGDsr~~l~r~g-~~~~lt~dh~~~--~e~~ri~~~g 177 (251)
+++++|. .++..+..+.......|+|++++++..+..||+||+||||++|++.| ++++||.||.|. .|+.||+++|
T Consensus 117 a~~~~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~G 196 (330)
T KOG0698|consen 117 ALRRAFLTKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAG 196 (330)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcC
Confidence 9999999 69999987633334566666666666566999999999999999865 899999999997 9999999999
Q ss_pred CeeecCCCCCCCcCCcccccccccCcCCC-CCceecceEEEEEecCCCeEEEEEcCCCCCCCCCHHHHHHH
Q 025554 178 GFVSNMPGDVPRVNGQLAVSRAFGDKSLK-SHLRSDPDIQNTILDGRSDVLVLASDGLWKVSYFFLNFLSL 247 (251)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~ltr~lG~~~~k-~~v~~~p~v~~~~l~~~~d~lil~SDGl~d~l~~~~~~~~~ 247 (251)
|++..... .+|++|.+++||+|||..+| ++|+++|++....+.++++||||+||||||+|++++++...
T Consensus 197 G~v~~~~~-~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V 266 (330)
T KOG0698|consen 197 GRVSNWGG-VWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLV 266 (330)
T ss_pred CEEEEcCC-cceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHH
Confidence 99996544 57999999999999999999 89999999999999998999999999999999999998765
No 3
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=2.3e-40 Score=281.74 Aligned_cols=211 Identities=37% Similarity=0.537 Sum_probs=171.5
Q ss_pred eEEEEeecCCCCCCCCceEEEEeeec---CCCceEEEEEEcCCCChHHHHHHHHHHHHHHHhcccCCC--CHHHHHHHHH
Q 025554 33 KFGFSLVKGKANHPMEDYHVAKFVQL---QGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWV--DPQRSISKAY 107 (251)
Q Consensus 33 ~~~~~s~~G~~~~~neD~~~~~~~~~---~~~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~~~~~~--~~~~~l~~~~ 107 (251)
.+|+.+.+|.|. .|||++++..... ...+..+|+|||||||..++.++...+...+.+...... .+.++|..+|
T Consensus 1 ~~~~~~~~g~r~-~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~ 79 (254)
T PF00481_consen 1 DYGVSSMQGVRK-EMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAF 79 (254)
T ss_dssp EEEEEEEECTSS-SHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcCeecCCCCCC-cccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhccccee
Confidence 478899999999 8999998766543 456789999999999999999999999977766554333 5889999999
Q ss_pred HH-HHHHHHhccCC-CCCCCcceEEEEEEeCCeEEEEEecCceeEEeeCCceE-ecCCCCCCC--chHHHHHHcCCeeec
Q 025554 108 EK-TDQAILSHSSD-LGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAV-QMTTDHEPN--TERGSIEDKGGFVSN 182 (251)
Q Consensus 108 ~~-~~~~l~~~~~~-~~~~~~tt~~~~~i~~~~l~ianvGDsr~~l~r~g~~~-~lt~dh~~~--~e~~ri~~~g~~~~~ 182 (251)
.. +++.+...... ....+|||++++++.++++|+|||||||+|+++++... +||+||++. .|+.||++.||.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~ 159 (254)
T PF00481_consen 80 LAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSE 159 (254)
T ss_dssp HHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEE
T ss_pred eecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeecccccccc
Confidence 99 88888763221 33567888888889999999999999999999999888 999999999 899999999999885
Q ss_pred CCCCCCCcCCcccccccccCcCCCC----CceecceEEEEEecCCCeEEEEEcCCCCCCCCCHHHHHHHh
Q 025554 183 MPGDVPRVNGQLAVSRAFGDKSLKS----HLRSDPDIQNTILDGRSDVLVLASDGLWKVSYFFLNFLSLL 248 (251)
Q Consensus 183 ~~~~~~~~~~~~~ltr~lG~~~~k~----~v~~~p~v~~~~l~~~~d~lil~SDGl~d~l~~~~~~~~~~ 248 (251)
..++++.+.+||+||+..+|+ +|+++|++..+++.++++|||||||||||+|++++.+..+.
T Consensus 160 ----~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~ 225 (254)
T PF00481_consen 160 ----NGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVR 225 (254)
T ss_dssp ----TEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHH
T ss_pred ----chhhhhccccccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHH
Confidence 468889999999999999998 89999999999999965699999999999999998876543
No 4
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-39 Score=266.97 Aligned_cols=212 Identities=30% Similarity=0.470 Sum_probs=186.3
Q ss_pred CCCCCCceEEEEeecCCCCCCCCceEEEEee-ecCCCceEEEEEEcCCCChHHHHHHHHHHHHHHHhcccCCC-------
Q 025554 26 RSNVGLVKFGFSLVKGKANHPMEDYHVAKFV-QLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWV------- 97 (251)
Q Consensus 26 ~~~~~~~~~~~~s~~G~~~~~neD~~~~~~~-~~~~~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~~~~~~------- 97 (251)
....+.++||..|++|+|- .|||++..... ...-++|++|+|||||-|+++|.++++.|++.+.+..++..
T Consensus 16 ~G~GNglryg~SSMQGWR~-eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv 94 (379)
T KOG0697|consen 16 EGEGNGLRYGVSSMQGWRV-EMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSV 94 (379)
T ss_pred cCcCCceeeeeccccchhh-hhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcH
Confidence 3456899999999999999 99999965333 34457899999999999999999999999999988766544
Q ss_pred -CHHHHHHHHHHHHHHHHHhccCCC--CCCCcceEEEEEEeCCeEEEEEecCceeEEeeCCceEecCCCCCCC--chHHH
Q 025554 98 -DPQRSISKAYEKTDQAILSHSSDL--GRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPN--TERGS 172 (251)
Q Consensus 98 -~~~~~l~~~~~~~~~~l~~~~~~~--~~~~~tt~~~~~i~~~~l~ianvGDsr~~l~r~g~~~~lt~dh~~~--~e~~r 172 (251)
+.+..|+..|+.+++.+....... ...+|+|++++++...++|++|+||||++++|+|+++.-|+||.|. .|++|
T Consensus 95 ~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeR 174 (379)
T KOG0697|consen 95 ENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKER 174 (379)
T ss_pred HHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHHH
Confidence 567889999999999887754322 2348888999999999999999999999999999999999999999 99999
Q ss_pred HHHcCCeeecCCCCCCCcCCcccccccccCcCCCC---------CceecceEEEEEecCCCeEEEEEcCCCCCCCCCHHH
Q 025554 173 IEDKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKS---------HLRSDPDIQNTILDGRSDVLVLASDGLWKVSYFFLN 243 (251)
Q Consensus 173 i~~~g~~~~~~~~~~~~~~~~~~ltr~lG~~~~k~---------~v~~~p~v~~~~l~~~~d~lil~SDGl~d~l~~~~~ 243 (251)
|..+||.+-. .|+||.++++|+|||+.||. .|+++|++....-...++||||++||+||+|++++-
T Consensus 175 IqnAGGSVMI-----qRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneel 249 (379)
T KOG0697|consen 175 IQNAGGSVMI-----QRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEEL 249 (379)
T ss_pred HhcCCCeEEE-----EEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHH
Confidence 9999999885 59999999999999999994 599999999998888899999999999999999753
No 5
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=7.9e-38 Score=266.56 Aligned_cols=207 Identities=30% Similarity=0.338 Sum_probs=171.0
Q ss_pred CCCceEEEEeecCCCCCCCCceEEEEeeecCCCceEEEEEEcCCCChHHHHHHHHHHHHHHHhcccC----CCC--HHHH
Q 025554 29 VGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEF----WVD--PQRS 102 (251)
Q Consensus 29 ~~~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~~~~----~~~--~~~~ 102 (251)
...+.++..++.|..++.|||++.+........ ..+|+|||||||+++++++++.+.+.+.+.... ... ..+.
T Consensus 5 ~~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~ 83 (262)
T COG0631 5 ILSLKVAGLSDVGTVRKHNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEEL 83 (262)
T ss_pred cceeeeeeeccCCCccCCCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHH
Confidence 456788899999998889999998766444343 679999999999999999998888777655321 112 6899
Q ss_pred HHHHHHHHHHHHHhccC--CCCCCCcceEEEEEEeCCeEEEEEecCceeEEeeCCceEecCCCCCCCchHHHHHHcCCee
Q 025554 103 ISKAYEKTDQAILSHSS--DLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNTERGSIEDKGGFV 180 (251)
Q Consensus 103 l~~~~~~~~~~l~~~~~--~~~~~~~tt~~~~~i~~~~l~ianvGDsr~~l~r~g~~~~lt~dh~~~~e~~ri~~~g~~~ 180 (251)
|.+++..+|+.+..... ....++|||++++++.++++|+|||||||+|++|+|++++||+||++. .+..+.+...
T Consensus 84 l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~---~~~~~~~~~~ 160 (262)
T COG0631 84 LKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLV---NRLEQRGIIT 160 (262)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHH---HHHHHhcCCC
Confidence 99999999999988754 335889999999999999999999999999999999999999999885 3344444444
Q ss_pred ecCCCCCCCcCCcccccccccCcCCCCCceecceEEEEEecCCCeEEEEEcCCCCCCCCCHHHHHHHh
Q 025554 181 SNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIQNTILDGRSDVLVLASDGLWKVSYFFLNFLSLL 248 (251)
Q Consensus 181 ~~~~~~~~~~~~~~~ltr~lG~~~~k~~v~~~p~v~~~~l~~~~d~lil~SDGl~d~l~~~~~~~~~~ 248 (251)
+.....+|+++ ++||+||+.. ..+|++....+.+ +|++|||||||||.++++.....+.
T Consensus 161 ~~~~~~~~~~~---~ltralG~~~-----~~~p~~~~~~~~~-~d~llL~SDGl~d~v~~~~i~~il~ 219 (262)
T COG0631 161 PEEARSHPRRN---ALTRALGDFD-----LLEPDITELELEP-GDFLLLCSDGLWDVVSDDEIVDILK 219 (262)
T ss_pred HHHHHhCccch---hhhhhcCCCc-----ccceeEEEEEcCC-CCEEEEECCCCccCcCHHHHHHHHh
Confidence 44455568888 9999999999 6899999999999 7999999999999999977666554
No 6
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=4.1e-37 Score=272.97 Aligned_cols=203 Identities=32% Similarity=0.494 Sum_probs=164.3
Q ss_pred CCCCceEEEEeecCCCCCCCCceEEEEeeecCCCceEEEEEEcCCCChHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHH
Q 025554 28 NVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAY 107 (251)
Q Consensus 28 ~~~~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 107 (251)
....+.+|..+++|.|+ .|||++++.. ..+..+|+|||||||..+|+++++.+...+..... ....+.|++++
T Consensus 18 ~~~~~~~g~~s~~G~R~-~nED~~~v~~----~~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~--~~~~~~l~~a~ 90 (381)
T PTZ00224 18 GNSIFRCASACVNGYRE-SMEDAHLLYL----TDDWGFFGVFDGHVNDECSQYLARAWPQALEKEPE--PMTDERMEELC 90 (381)
T ss_pred CCccEEEEEEeCCCCCC-CCCCeeEecc----CCCceEEEEEeCCCcHHHHHHHHHHHHHHHHhccc--cccHHHHHHHH
Confidence 45678999999999988 8999986532 22346999999999999999999999876644321 12345699999
Q ss_pred HHHHHHHHhccCCCCCCCcceEEEEEEeCCeEEEEEecCceeEEeeCCceEecCCCCCCC--chHHHHHHcCCeeecCCC
Q 025554 108 EKTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPN--TERGSIEDKGGFVSNMPG 185 (251)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~tt~~~~~i~~~~l~ianvGDsr~~l~r~g~~~~lt~dh~~~--~e~~ri~~~g~~~~~~~~ 185 (251)
..+|+.+.+... .+|+|.+++++..+++++++||||||+|++|+|++++||+||++. .|++||.+.|+.+..
T Consensus 91 ~~~d~~i~~~~~---~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~--- 164 (381)
T PTZ00224 91 LEIDEEWMDSGR---EGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVVS--- 164 (381)
T ss_pred HHHHHHHHhccc---CCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEecc---
Confidence 999999986543 234444444445568999999999999999999999999999998 688999999988763
Q ss_pred CCCCcCCcccccccccCcCCCC---------CceecceEEEEEecCCCeEEEEEcCCCCC-CCCCHHHHHH
Q 025554 186 DVPRVNGQLAVSRAFGDKSLKS---------HLRSDPDIQNTILDGRSDVLVLASDGLWK-VSYFFLNFLS 246 (251)
Q Consensus 186 ~~~~~~~~~~ltr~lG~~~~k~---------~v~~~p~v~~~~l~~~~d~lil~SDGl~d-~l~~~~~~~~ 246 (251)
.+++|.+.+||+||+..+|. .|+++|++..+++.+ +|+|||||||||| .+++++....
T Consensus 165 --~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~-~D~llLaSDGL~d~~ls~eEi~~i 232 (381)
T PTZ00224 165 --NRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQS-NDFIILACDGVFEGNFSNEEVVAF 232 (381)
T ss_pred --ccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCC-CCEEEEECCCcCcCccCHHHHHHH
Confidence 47788889999999977653 366899999999987 8999999999999 7998776543
No 7
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=1e-32 Score=233.78 Aligned_cols=208 Identities=41% Similarity=0.608 Sum_probs=172.4
Q ss_pred CceEEEEeecCCCCCCCCceEEEEeeecCCCceEEEEEEcCCCChHHHHHHHHHHHHHHHhcccCC----CCHHHHHHHH
Q 025554 31 LVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFW----VDPQRSISKA 106 (251)
Q Consensus 31 ~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~~~~~----~~~~~~l~~~ 106 (251)
.+.+++.+..|.|. .|||++++.... ..+..+++|||||||..+++++++.+.+.+....... ..+.+.|+++
T Consensus 5 ~~~~~~~~~~~~r~-~neD~~~~~~~~--~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (255)
T smart00332 5 GLRYGLSSMQGVRK-PMEDAHVITPDL--SDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKA 81 (255)
T ss_pred ceeEEEecCCCCCC-CCcceEEEeccC--CCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHH
Confidence 46777866667666 999999764431 2457899999999999999999999998887654333 2478899999
Q ss_pred HHHHHHHHHhccCCC--CCCCcceEEEEEEeCCeEEEEEecCceeEEeeCCceEecCCCCCCC--chHHHHHHcCCeeec
Q 025554 107 YEKTDQAILSHSSDL--GRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPN--TERGSIEDKGGFVSN 182 (251)
Q Consensus 107 ~~~~~~~l~~~~~~~--~~~~~tt~~~~~i~~~~l~ianvGDsr~~l~r~g~~~~lt~dh~~~--~e~~ri~~~g~~~~~ 182 (251)
+..+++.+....... ...++||++++++..+.++++|+||||+|++|+++++++|.||++. .|..++.+.++.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~ 161 (255)
T smart00332 82 FLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVIN 161 (255)
T ss_pred HHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEEC
Confidence 999999998765443 3568999999999999999999999999999999999999999997 778999999887653
Q ss_pred CCCCCCCcCCcccccccccCcCCCCCceecceEEEEEe-cCCCeEEEEEcCCCCCCCCCHHHHHHH
Q 025554 183 MPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIQNTIL-DGRSDVLVLASDGLWKVSYFFLNFLSL 247 (251)
Q Consensus 183 ~~~~~~~~~~~~~ltr~lG~~~~k~~v~~~p~v~~~~l-~~~~d~lil~SDGl~d~l~~~~~~~~~ 247 (251)
.+.++.+.+||++|...+|+.+.++|++...++ .+ +|+|||||||||+++++++....+
T Consensus 162 -----~~~~~~~~lt~~~g~~~~~~~i~~~p~~~~~~~~~~-~d~ill~SDGv~~~l~~~~i~~~~ 221 (255)
T smart00332 162 -----GRVNGVLALSRAIGDFFLKPYVSAEPDVTVVELTEK-DDFLILASDGLWDVLSNQEVVDIV 221 (255)
T ss_pred -----CeECCeEecccccCCHhhcCCeEeeeEEEEEEecCC-CcEEEEECCccccCCCHHHHHHHH
Confidence 133344599999999999999999999999997 55 999999999999999997765544
No 8
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=9.9e-33 Score=233.35 Aligned_cols=208 Identities=40% Similarity=0.543 Sum_probs=168.2
Q ss_pred ceEEEEeecCCCCCCCCceEEEEeeecCCCceEEEEEEcCCCChHHHHHHHHHHHHHHHhcccC-----CCCHHHHHHHH
Q 025554 32 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEF-----WVDPQRSISKA 106 (251)
Q Consensus 32 ~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~~~~-----~~~~~~~l~~~ 106 (251)
+.+++.+..|.|. .|||++.+...... .+..+|+|||||||+..++++++.+.+.+...... ...+...|+++
T Consensus 1 ~~~~~~~~~g~r~-~neD~~~~~~~~~~-~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 78 (254)
T cd00143 1 FSAGVSDKGGDRK-TNEDAVVIKPNLNN-EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKA 78 (254)
T ss_pred CceeeecCCCCCC-CCcceEEEeccCCC-CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 3567777788887 89999986443221 24689999999999999999888888877655432 24567889999
Q ss_pred HHHHHHHHHhccCC--CCCCCcceEEEEEEeCCeEEEEEecCceeEEeeCCceEecCCCCCCC--chHHHHHHcCCeeec
Q 025554 107 YEKTDQAILSHSSD--LGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPN--TERGSIEDKGGFVSN 182 (251)
Q Consensus 107 ~~~~~~~l~~~~~~--~~~~~~tt~~~~~i~~~~l~ianvGDsr~~l~r~g~~~~lt~dh~~~--~e~~ri~~~g~~~~~ 182 (251)
|..+++.+...... ....++||++++++..+.++++|+||||+|++|+++++++|+||++. .+..|+...++++..
T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~ 158 (254)
T cd00143 79 FLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSN 158 (254)
T ss_pred HHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEEe
Confidence 99999999876542 34667888988899999999999999999999999999999999998 778999998876541
Q ss_pred CCCCCCCcCCcccccccccCcCCCCCceecceEEEEEecCCCeEEEEEcCCCCCCCCCHHHHHH
Q 025554 183 MPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIQNTILDGRSDVLVLASDGLWKVSYFFLNFLS 246 (251)
Q Consensus 183 ~~~~~~~~~~~~~ltr~lG~~~~k~~v~~~p~v~~~~l~~~~d~lil~SDGl~d~l~~~~~~~~ 246 (251)
.+......+||+||+..+|+.+..+|++..+++.+.+|+|||||||||++++++.....
T Consensus 159 -----~~~~~~~~~t~~lG~~~~~~~~~~~~~~~~~~l~~~~d~ill~SDG~~~~l~~~~i~~~ 217 (254)
T cd00143 159 -----GRVPGVLAVTRALGDFDLKPGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDI 217 (254)
T ss_pred -----CEEcCceeeccccCCccccCCEEcCCeEEEEEeCCCCcEEEEECCCCeeccChHHHHHH
Confidence 23334459999999998887788999999999933499999999999999987654433
No 9
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-33 Score=242.36 Aligned_cols=201 Identities=35% Similarity=0.433 Sum_probs=159.0
Q ss_pred CCCceEEEEeeecCCCceEEEEEEcCCCChHHHHHHHHHHHHHHHhcc-------------c------------------
Q 025554 46 PMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEE-------------E------------------ 94 (251)
Q Consensus 46 ~neD~~~~~~~~~~~~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~~-------------~------------------ 94 (251)
.-||++-+.... +.++.|+||||||||.++++++.++|+..+..+. +
T Consensus 84 ~~edrv~~~~s~--~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~ 161 (390)
T KOG0700|consen 84 AEEDRVSVAVSE--ENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSS 161 (390)
T ss_pred cccCcceeeeec--cCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccc
Confidence 357777433332 4568999999999999999999999999776221 1
Q ss_pred --C-CCCHHHHHHHHHHHHHHHHHhccCCC------CCCCcceEEEEEEeCCeEEEEEecCceeEEee---CC---ceEe
Q 025554 95 --F-WVDPQRSISKAYEKTDQAILSHSSDL------GRGGSTAVTAILINGQRLWVANVGDSRAVLST---AG---VAVQ 159 (251)
Q Consensus 95 --~-~~~~~~~l~~~~~~~~~~l~~~~~~~------~~~~~tt~~~~~i~~~~l~ianvGDsr~~l~r---~g---~~~~ 159 (251)
. ...+.++|.+||+++++.+....... .-.+|+|+++.++.+..|||||+|||||+|.+ ++ .++|
T Consensus 162 ~~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~q 241 (390)
T KOG0700|consen 162 ADQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQ 241 (390)
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEe
Confidence 1 34578899999999999996532111 23356666666788999999999999999964 33 5799
Q ss_pred cCCCCCCC--chHHHHHHcCC-eeecCCCCCCCcCCcccccccccCcCCC---------------------CCceecceE
Q 025554 160 MTTDHEPN--TERGSIEDKGG-FVSNMPGDVPRVNGQLAVSRAFGDKSLK---------------------SHLRSDPDI 215 (251)
Q Consensus 160 lt~dh~~~--~e~~ri~~~g~-~~~~~~~~~~~~~~~~~ltr~lG~~~~k---------------------~~v~~~p~v 215 (251)
||.||+.. +|+.||+...- -.......++|+.|.+.+||+||+..+| |+++++|.+
T Consensus 242 LS~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i 321 (390)
T KOG0700|consen 242 LSTDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSI 321 (390)
T ss_pred cChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceE
Confidence 99999998 88999998863 1222223446999999999999999998 379999999
Q ss_pred EEEEecCCCeEEEEEcCCCCCCCCCHHHHHHHh
Q 025554 216 QNTILDGRSDVLVLASDGLWKVSYFFLNFLSLL 248 (251)
Q Consensus 216 ~~~~l~~~~d~lil~SDGl~d~l~~~~~~~~~~ 248 (251)
+..+|.+.+.|+||+||||||+|++++++..+.
T Consensus 322 ~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~ 354 (390)
T KOG0700|consen 322 THHKLTPNDKFLILASDGLWEYLSNEEAVSLVH 354 (390)
T ss_pred EEEEcCCCCeEEEEeccchhhhcChHHHHHHHH
Confidence 999999999999999999999999999987764
No 10
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=4.7e-32 Score=253.21 Aligned_cols=199 Identities=23% Similarity=0.247 Sum_probs=145.0
Q ss_pred CceEEEEeecCCCCCCCCceEEEEeee-----cCC---CceEEEEEEcCCCChHHHH----HHHHHHHHHHHhcccCCCC
Q 025554 31 LVKFGFSLVKGKANHPMEDYHVAKFVQ-----LQG---HELGLFAIYDGHLGETVPA----YLQKHLFSNILKEEEFWVD 98 (251)
Q Consensus 31 ~~~~~~~s~~G~~~~~neD~~~~~~~~-----~~~---~~~~~~~V~DG~GG~~~a~----~~~~~l~~~~~~~~~~~~~ 98 (251)
.+.++..+++|.+++.|||++.+.... ..+ ....+|+|||||||+.+++ ++++.+.+.+.........
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~~ 453 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDELP 453 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhccccc
Confidence 477899999998666999998653210 111 1346999999999986544 5555554444322211123
Q ss_pred HHHHHHHHHHHHHHHHHhccCC----CCCCCcceEEEEEEeCCeEEEEEecCceeEEe-eCCceEecCCCCCCCchHHHH
Q 025554 99 PQRSISKAYEKTDQAILSHSSD----LGRGGSTAVTAILINGQRLWVANVGDSRAVLS-TAGVAVQMTTDHEPNTERGSI 173 (251)
Q Consensus 99 ~~~~l~~~~~~~~~~l~~~~~~----~~~~~~tt~~~~~i~~~~l~ianvGDsr~~l~-r~g~~~~lt~dh~~~~e~~ri 173 (251)
..+.|+++|..+|+.|.+.... ....+|||++++++.++++|++||||||+|++ |+|++++||+||++. +++
T Consensus 454 ~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~---~~l 530 (645)
T PRK14559 454 DEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVG---QRE 530 (645)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHH---HHH
Confidence 4678999999999999875322 23568999999999999999999999999998 578999999999874 344
Q ss_pred HHcCCeeecCCCCCCCcCCcccccccccCcCCCCCceecceEEEEEecCCCeEEEEEcCCCCC--CCCC
Q 025554 174 EDKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIQNTILDGRSDVLVLASDGLWK--VSYF 240 (251)
Q Consensus 174 ~~~g~~~~~~~~~~~~~~~~~~ltr~lG~~~~k~~v~~~p~v~~~~l~~~~d~lil~SDGl~d--~l~~ 240 (251)
.+.| ........++..+ .+||+||+...+ ..+|++..+.+.+ +|+|||||||||| .+++
T Consensus 531 v~~G-i~~~~a~~~p~~~---~LTrALG~~~~~---~l~Pdi~~~~L~~-gD~lLLCSDGL~D~~~ve~ 591 (645)
T PRK14559 531 IQRG-VEPQIAYARPDAY---QLTQALGPRDNS---AIQPDIQFLEIEE-DTLLLLCSDGLSDNDLLET 591 (645)
T ss_pred HHhC-CCHHHHhcCcccc---eeeeccCCCCCC---cccceEEEEEcCC-CCEEEEECCCCCCCcccch
Confidence 5555 2222233334444 999999987633 4689999999987 9999999999999 3554
No 11
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.98 E-value=5.2e-32 Score=230.27 Aligned_cols=117 Identities=40% Similarity=0.592 Sum_probs=109.0
Q ss_pred CcceEEEEEEeCCeEEEEEecCceeEEeeCCceEecCCCCCCC--chHHHHHHcCCeeecCCCCCCCcCCcccccccccC
Q 025554 125 GSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPN--TERGSIEDKGGFVSNMPGDVPRVNGQLAVSRAFGD 202 (251)
Q Consensus 125 ~~tt~~~~~i~~~~l~ianvGDsr~~l~r~g~~~~lt~dh~~~--~e~~ri~~~g~~~~~~~~~~~~~~~~~~ltr~lG~ 202 (251)
+|||++++++.+.+|++||.||||+++.|+|+++.|+.||.|. .|..||..+||.+.- .+|+||.+.|+|+||+
T Consensus 330 SGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtl----DGRVNGGLNLSRA~GD 405 (542)
T KOG0699|consen 330 SGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTL----DGRVNGGLNLSRAFGD 405 (542)
T ss_pred CCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEee----cceecCccchhhhhhh
Confidence 7899999999999999999999999999999999999999998 889999999999883 3899999999999999
Q ss_pred cCCCC---------CceecceEEEEEecCCCeEEEEEcCCCCCCCCCHHHHH
Q 025554 203 KSLKS---------HLRSDPDIQNTILDGRSDVLVLASDGLWKVSYFFLNFL 245 (251)
Q Consensus 203 ~~~k~---------~v~~~p~v~~~~l~~~~d~lil~SDGl~d~l~~~~~~~ 245 (251)
..||+ -|++-|+|..+.|+++++|+++++||+|++|+.+..+.
T Consensus 406 HaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVd 457 (542)
T KOG0699|consen 406 HAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVD 457 (542)
T ss_pred hhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHH
Confidence 99996 38899999999999999999999999999999987654
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.92 E-value=2.5e-24 Score=181.80 Aligned_cols=186 Identities=27% Similarity=0.388 Sum_probs=139.3
Q ss_pred CceEEEEEEcCCCChHHHHHHHHHHHHHHHhccc---------------------------C--------C-----CCHH
Q 025554 61 HELGLFAIYDGHLGETVPAYLQKHLFSNILKEEE---------------------------F--------W-----VDPQ 100 (251)
Q Consensus 61 ~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~~~---------------------------~--------~-----~~~~ 100 (251)
....+|.+||||.|..+|-.+++.+-..+.+... . . .-..
T Consensus 142 ~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LVi 221 (493)
T KOG1323|consen 142 ADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLVI 221 (493)
T ss_pred CcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhhH
Confidence 4578999999999997776666555433322200 0 0 0134
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCcceEEEEEEeCCeEEEEEecCceeEEeeCCceEecCCCCCCCchHHHHHHcCCee
Q 025554 101 RSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNTERGSIEDKGGFV 180 (251)
Q Consensus 101 ~~l~~~~~~~~~~l~~~~~~~~~~~~tt~~~~~i~~~~l~ianvGDsr~~l~r~g~~~~lt~dh~~~~e~~ri~~~g~~~ 180 (251)
-+|+.||+.+++.|.+..+.....||+|+++++.--++||++|.||||++++|+++++.|+.+-+|..|++|+..-...-
T Consensus 222 GAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPetERqRlQ~Laf~~ 301 (493)
T KOG1323|consen 222 GALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPETERQRLQELAFRN 301 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcHHHHHHHHHHhhcC
Confidence 67999999999999887666666667776666666899999999999999999999999999999999999998854332
Q ss_pred ecCCC--------------------------------------------------CCCCcCCcccccccccCcCCC----
Q 025554 181 SNMPG--------------------------------------------------DVPRVNGQLAVSRAFGDKSLK---- 206 (251)
Q Consensus 181 ~~~~~--------------------------------------------------~~~~~~~~~~ltr~lG~~~~k---- 206 (251)
++..+ ...|+-+++.+||.|||..+|
T Consensus 302 PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~ds 381 (493)
T KOG1323|consen 302 PELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVVDS 381 (493)
T ss_pred hHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceeeeecC
Confidence 22200 111222567899999998766
Q ss_pred -----CCceecceEEEEEecC----CCeEEEEEcCCCCCCCCCHHHHHH
Q 025554 207 -----SHLRSDPDIQNTILDG----RSDVLVLASDGLWKVSYFFLNFLS 246 (251)
Q Consensus 207 -----~~v~~~p~v~~~~l~~----~~d~lil~SDGl~d~l~~~~~~~~ 246 (251)
|.+++.|+++..++.+ .+|++||+|||+||++++++.-..
T Consensus 382 nl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~ 430 (493)
T KOG1323|consen 382 NLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALI 430 (493)
T ss_pred CcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHH
Confidence 5688999999988764 378999999999999999765443
No 13
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.87 E-value=1.9e-21 Score=160.76 Aligned_cols=178 Identities=20% Similarity=0.256 Sum_probs=97.4
Q ss_pred EeecCCCCCCCCceEEEEeeecCCCceEEEEEEcCCCCh----HHHHHHHHHHHHHHHhcccCCCC--HHHHHHHHHHHH
Q 025554 37 SLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGE----TVPAYLQKHLFSNILKEEEFWVD--PQRSISKAYEKT 110 (251)
Q Consensus 37 ~s~~G~~~~~neD~~~~~~~~~~~~~~~~~~V~DG~GG~----~~a~~~~~~l~~~~~~~~~~~~~--~~~~l~~~~~~~ 110 (251)
.+++|.+. +|||++.+..... ..+++|+||+||. .+|..+++.+.+.+......... ....++.+...+
T Consensus 3 ~sh~~~~~-~nqD~~~~~~~~~----~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 77 (212)
T PF13672_consen 3 RSHRGRGA-PNQDAFGIRTDDD----GNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEI 77 (212)
T ss_dssp ----TTSS-S--EEEEEE-TCC----TCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCC-CCCCCEEeeeCCC----CEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 35778887 8999997433322 3477999999977 44555666665555544432211 122233333333
Q ss_pred HHHH-----HhccCCCCCCCcceEEEEEEeCCeEEEEEecCceeEE-eeCCceEecCCCCCCCchHHHHHHcCCeeecCC
Q 025554 111 DQAI-----LSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVL-STAGVAVQMTTDHEPNTERGSIEDKGGFVSNMP 184 (251)
Q Consensus 111 ~~~l-----~~~~~~~~~~~~tt~~~~~i~~~~l~ianvGDsr~~l-~r~g~~~~lt~dh~~~~e~~ri~~~g~~~~~~~ 184 (251)
...+ ...........+||++++++.++.++++|+||||+|+ .++|++..++.+|+. + ...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~--~---~~~--------- 143 (212)
T PF13672_consen 78 LSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSG--E---YPN--------- 143 (212)
T ss_dssp HHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BH--H---HHH---------
T ss_pred HHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccc--h---hhh---------
Confidence 3211 1111234567789999999999999999999999965 588999999999952 1 111
Q ss_pred CCCCCcCCcccccccccCcCCCCCceecceEEEEEecCCCeEEEEEcCCCCCCCCCHHHHHHHhh
Q 025554 185 GDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIQNTILDGRSDVLVLASDGLWKVSYFFLNFLSLLA 249 (251)
Q Consensus 185 ~~~~~~~~~~~ltr~lG~~~~k~~v~~~p~v~~~~l~~~~d~lil~SDGl~d~l~~~~~~~~~~~ 249 (251)
. ++.+..... ....++..+++.+ ++.|+|||||||+.+.+.+.+..++.
T Consensus 144 ----------~-~~~~~~~~~----~~~~~~~~~~~~~-~d~ilL~SDG~~~~l~~~~~~~~~l~ 192 (212)
T PF13672_consen 144 ----------Q-TRSLTGDDP----EPDVQYGSIPLEE-GDVILLCSDGVWDNLRSYEDLEQFLK 192 (212)
T ss_dssp ----------C-TTSCCHHCC----CTETEEEEEE--T-T-EEEEE-HHHHTTS-HHHHHHHH--
T ss_pred ----------h-hhccCcccc----ccCCeEEEEEcCC-CCEEEEECcCccccCCCHHHHHHHhh
Confidence 1 112221110 2344666677777 99999999999999987776666553
No 14
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.85 E-value=3.2e-20 Score=156.56 Aligned_cols=172 Identities=21% Similarity=0.134 Sum_probs=117.2
Q ss_pred CCCceEEEEeeecCCCceEEEEEEcCCCCh--------HHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHhc
Q 025554 46 PMEDYHVAKFVQLQGHELGLFAIYDGHLGE--------TVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSH 117 (251)
Q Consensus 46 ~neD~~~~~~~~~~~~~~~~~~V~DG~GG~--------~~a~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 117 (251)
.-||++++..+. ...+.|||||+||| ..++.+.++..+.+.+......+|...|.+++.++-.+
T Consensus 90 ~GEDa~Fvss~~----~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~~~---- 161 (330)
T KOG1379|consen 90 GGEDAWFVSSNP----HAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAELKSQ---- 161 (330)
T ss_pred CCCcceeeccCc----ccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHhhc----
Confidence 469999874432 34599999999998 55666666666666666666668898888888774431
Q ss_pred cCCCCCCCcceEEEEEEe-CCeEEEEEecCceeEEeeCCceEecCCCCCCCchHHHHHHcCCeeecCCCCCCCcCCcccc
Q 025554 118 SSDLGRGGSTAVTAILIN-GQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNTERGSIEDKGGFVSNMPGDVPRVNGQLAV 196 (251)
Q Consensus 118 ~~~~~~~~~tt~~~~~i~-~~~l~ianvGDsr~~l~r~g~~~~lt~dh~~~~e~~ri~~~g~~~~~~~~~~~~~~~~~~l 196 (251)
....-+++|++++++.+ +++||++|+|||-..++|+|+++.-|..+... ...+-+ -..+..+ .
T Consensus 162 -~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~----------FN~PyQ-Ls~~p~~---~- 225 (330)
T KOG1379|consen 162 -KVPIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHY----------FNTPYQ-LSSPPEG---Y- 225 (330)
T ss_pred -CCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheec----------cCCcee-eccCCcc---c-
Confidence 11223455555555543 78999999999999999999999999876431 000000 0001101 0
Q ss_pred cccccCcCCCCCceecceEEEEEecCCCeEEEEEcCCCCCCCCCHHHHHHHh
Q 025554 197 SRAFGDKSLKSHLRSDPDIQNTILDGRSDVLVLASDGLWKVSYFFLNFLSLL 248 (251)
Q Consensus 197 tr~lG~~~~k~~v~~~p~v~~~~l~~~~d~lil~SDGl~d~l~~~~~~~~~~ 248 (251)
..++++.. -..+...+++++ ||+|||+||||||+|.+.+.+..+-
T Consensus 226 ~~~~~d~p------~~ad~~~~~v~~-GDvIilATDGlfDNl~e~~Il~il~ 270 (330)
T KOG1379|consen 226 SSYISDVP------DSADVTSFDVQK-GDVIILATDGLFDNLPEKEILSILK 270 (330)
T ss_pred cccccCCc------cccceEEEeccC-CCEEEEecccccccccHHHHHHHHH
Confidence 12344333 456778899998 9999999999999999987776654
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=2.1e-18 Score=162.66 Aligned_cols=216 Identities=23% Similarity=0.342 Sum_probs=175.9
Q ss_pred CCCCCCCCCCceEEEEeecCCCCCCCCceEEEEeeecCCCceEEEEEEcCCCChHHHHHHHHHHHHHHHhcccCCCCHHH
Q 025554 22 TGKGRSNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQR 101 (251)
Q Consensus 22 ~~~~~~~~~~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~~~~~~~~~~ 101 (251)
+..+.....-|+||++...|+|++ +--+.+ .+.+.-+...+.|+++||-+..+..+.+...+.+.+.++.....+-.+
T Consensus 512 ~~d~~~n~~~~t~Gv~~~~gqrnk-~c~~~~-~v~nf~~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~ 589 (1081)
T KOG0618|consen 512 TPDGNVNAFLWTYGVAGVSGQRNK-VCSRAV-WVENFFLNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNETE 589 (1081)
T ss_pred CCccccceeheeeccchhcccccc-hhhhhh-hhhhcccCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccChHH
Confidence 444555566788999999999994 333332 222222334479999999999999999999999999988877777777
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCcceEEEEEEeC-------CeEEEEEecCceeEEeeCCceEecCCCCCCC---chHH
Q 025554 102 SISKAYEKTDQAILSHSSDLGRGGSTAVTAILING-------QRLWVANVGDSRAVLSTAGVAVQMTTDHEPN---TERG 171 (251)
Q Consensus 102 ~l~~~~~~~~~~l~~~~~~~~~~~~tt~~~~~i~~-------~~l~ianvGDsr~~l~r~g~~~~lt~dh~~~---~e~~ 171 (251)
.|+.+|...|+++...++ ..|++.+++-+..+ ..+++||+|+|.++++++|+..++|+...+. +|.+
T Consensus 590 ~mr~~fl~~~rklg~~g~---~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~ 666 (1081)
T KOG0618|consen 590 QMRNTFLRLNRKLGEEGQ---VLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYK 666 (1081)
T ss_pred HHHHHHHHHhhhhhhhhc---cccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHH
Confidence 899999999999966544 34455545444432 4789999999999999999988888876444 8999
Q ss_pred HHHHcCCeeecCCCCCCCcCCcccccccccCcCCCCCceecceEEEEEecCCCeEEEEEcCCCCCCCCCHHHHHH
Q 025554 172 SIEDKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIQNTILDGRSDVLVLASDGLWKVSYFFLNFLS 246 (251)
Q Consensus 172 ri~~~g~~~~~~~~~~~~~~~~~~ltr~lG~~~~k~~v~~~p~v~~~~l~~~~d~lil~SDGl~d~l~~~~~~~~ 246 (251)
||+..+|++.. ..+++|....||++|.+...|+|.+.|+|....+.+.+++||+++.++|++|+.+.++..
T Consensus 667 RI~~~~g~i~e----d~k~ngvt~~tR~iG~~~l~P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~ 737 (1081)
T KOG0618|consen 667 RIVDSKGFITE----DNKLNGVTSSTRAIGPFSLFPHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDA 737 (1081)
T ss_pred HHHHhcCeecC----CCeeeceeeeeeecccccccccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHH
Confidence 99999999984 368888889999999999999999999999999999999999999999999999888754
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.73 E-value=5.9e-16 Score=126.08 Aligned_cols=159 Identities=21% Similarity=0.134 Sum_probs=110.3
Q ss_pred eEEEEeecCCCCCCCCceEEEEeeecCCCceEEEEEEcCCCChHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHH
Q 025554 33 KFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQ 112 (251)
Q Consensus 33 ~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 112 (251)
.++.....+.. ..-|.+.+.... ++..+++|+||+|+...|.+++..+...+.+...... .+.+.+..+|+
T Consensus 5 ~~~~~~~p~~~--~~GD~~~~~~~~---~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~----~~~~~l~~~n~ 75 (193)
T smart00331 5 LIAQYYEDATQ--VGGDFYDVVKLP---EGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGI----SLSQILERLNR 75 (193)
T ss_pred EEEEEEcchHh--cCccEEEEEEeC---CCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCC----CHHHHHHHHHH
Confidence 34444444443 477888543332 2258999999999888888887777776654433222 35666777888
Q ss_pred HHHhccCCCCCCCcceEEEEEE--eCCeEEEEEecCceeEEee-CCceEecCCCCCCCchHHHHHHcCCeeecCCCCCCC
Q 025554 113 AILSHSSDLGRGGSTAVTAILI--NGQRLWVANVGDSRAVLST-AGVAVQMTTDHEPNTERGSIEDKGGFVSNMPGDVPR 189 (251)
Q Consensus 113 ~l~~~~~~~~~~~~tt~~~~~i--~~~~l~ianvGDsr~~l~r-~g~~~~lt~dh~~~~e~~ri~~~g~~~~~~~~~~~~ 189 (251)
.+..... ...++|++++++ .+++++++|+||+|+|+++ ++...+.+.+.
T Consensus 76 ~l~~~~~---~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~------------------------- 127 (193)
T smart00331 76 AIYENGE---DGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDL------------------------- 127 (193)
T ss_pred HHHhcCC---CCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCC-------------------------
Confidence 8876522 335666666665 5889999999999999998 55555555432
Q ss_pred cCCcccccccccCcCCCCCceecceEEEEEecCCCeEEEEEcCCCCCCCCCH
Q 025554 190 VNGQLAVSRAFGDKSLKSHLRSDPDIQNTILDGRSDVLVLASDGLWKVSYFF 241 (251)
Q Consensus 190 ~~~~~~ltr~lG~~~~k~~v~~~p~v~~~~l~~~~d~lil~SDGl~d~l~~~ 241 (251)
++.+|... ..+++...+++.+ +|.|+|+|||+||.++++
T Consensus 128 -------~~~lG~~~-----~~~~~~~~~~l~~-gd~l~l~TDGl~e~~~~~ 166 (193)
T smart00331 128 -------GAPLGLEP-----DVEVDVRELTLEP-GDLLLLYTDGLTEARNPE 166 (193)
T ss_pred -------CceeeeCC-----CCcceeEEEeeCC-CCEEEEECCCccccCChH
Confidence 23566555 4457778888888 999999999999999873
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.28 E-value=1.3e-10 Score=112.50 Aligned_cols=146 Identities=16% Similarity=0.084 Sum_probs=98.5
Q ss_pred CCCceEEEEeeecCCCceEEEEEEcCCCChHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 025554 46 PMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSSDLGRGG 125 (251)
Q Consensus 46 ~neD~~~~~~~~~~~~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 125 (251)
.+.|.+.+.... +...+++|+||+|....|...+....+.+..-.....+ .+.++..+|..+..... ...
T Consensus 566 vsGD~y~~~~l~---~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~----~~~ai~~lN~~L~~~~~---~~~ 635 (764)
T TIGR02865 566 VSGDSYSFGKLS---AGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGFD----REVAIKTVNSILSLRST---DEK 635 (764)
T ss_pred ccCceEEEEEEC---CCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhCCC---CCe
Confidence 689998643322 22478999999996655555444443333221111112 36677888888755422 234
Q ss_pred cceEEEEEEe--CCeEEEEEecCceeEEeeCCceEecCCCCCCCchHHHHHHcCCeeecCCCCCCCcCCcccccccccCc
Q 025554 126 STAVTAILIN--GQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNTERGSIEDKGGFVSNMPGDVPRVNGQLAVSRAFGDK 203 (251)
Q Consensus 126 ~tt~~~~~i~--~~~l~ianvGDsr~~l~r~g~~~~lt~dh~~~~e~~ri~~~g~~~~~~~~~~~~~~~~~~ltr~lG~~ 203 (251)
.+|+.+++++ .+++.++|+|+++.|+.|++++.+++..+.| +|-.
T Consensus 636 faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP---------------------------------lGil 682 (764)
T TIGR02865 636 FSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP---------------------------------IGIL 682 (764)
T ss_pred EEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce---------------------------------eEec
Confidence 5777766664 6899999999999999999988888765421 2322
Q ss_pred CCCCCceecceEEEEEecCCCeEEEEEcCCCCCCCCC
Q 025554 204 SLKSHLRSDPDIQNTILDGRSDVLVLASDGLWKVSYF 240 (251)
Q Consensus 204 ~~k~~v~~~p~v~~~~l~~~~d~lil~SDGl~d~l~~ 240 (251)
. ..+++....++.+ ||+|+|+|||+||..++
T Consensus 683 ~-----~~~~~~~~~~L~~-GD~Lll~SDGv~E~~~~ 713 (764)
T TIGR02865 683 D-----EVDVELVRKKLKN-GDLIVMVSDGVLEGEKE 713 (764)
T ss_pred c-----CCccceEEEEeCC-CCEEEEECCCCCcCCcc
Confidence 2 3456677788998 99999999999998765
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.13 E-value=1.9e-09 Score=87.44 Aligned_cols=134 Identities=19% Similarity=0.116 Sum_probs=82.4
Q ss_pred ceEEEEEEcCCCChHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHhccCCCCCCCcceEEEEEE--eCCeE
Q 025554 62 ELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSSDLGRGGSTAVTAILI--NGQRL 139 (251)
Q Consensus 62 ~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~tt~~~~~i--~~~~l 139 (251)
+.+++.|+|+.|..-.|...+..+...+........+ ....+..+|+.+....... ...+|++++.+ ..+++
T Consensus 3 ~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~----p~~~l~~ln~~l~~~~~~~--~~~~t~~~~~~d~~~~~l 76 (193)
T PF07228_consen 3 GRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGLD----PEELLEALNRRLYRDLKGD--NRYATACYAIIDPETGTL 76 (193)
T ss_dssp TEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHHHTTTT--STTEEEEEEEEETTTTEE
T ss_pred CEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhhhc--cccceEEEEEecccceEE
Confidence 4579999999995544444444443333322222122 5666667777774433321 23445555554 36789
Q ss_pred EEEEecCceeEEeeC--CceEecCCCCCCCchHHHHHHcCCeeecCCCCCCCcCCcccccccccCcCCCCCceecceEEE
Q 025554 140 WVANVGDSRAVLSTA--GVAVQMTTDHEPNTERGSIEDKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIQN 217 (251)
Q Consensus 140 ~ianvGDsr~~l~r~--g~~~~lt~dh~~~~e~~ri~~~g~~~~~~~~~~~~~~~~~~ltr~lG~~~~k~~v~~~p~v~~ 217 (251)
+++|+|+++++++|+ ++...+..... .+|... ...+....
T Consensus 77 ~~~~aG~~~~l~~~~~~~~~~~~~~~~~---------------------------------~lG~~~-----~~~~~~~~ 118 (193)
T PF07228_consen 77 TYANAGHPPPLLLRPGGREIEQLESEGP---------------------------------PLGIFE-----DIDYQEQE 118 (193)
T ss_dssp EEEEESSSEEEEEETTCTEEEEETCSSB---------------------------------BCSSSC-----TTCEEEEE
T ss_pred EEeCCCCCCEEEEeccccceeecccCcc---------------------------------ceeeec-----cccccceE
Confidence 999999999999998 33333333221 245433 34556677
Q ss_pred EEecCCCeEEEEEcCCCCCCCCC
Q 025554 218 TILDGRSDVLVLASDGLWKVSYF 240 (251)
Q Consensus 218 ~~l~~~~d~lil~SDGl~d~l~~ 240 (251)
+++.+ ||.|+|+||||+|..+.
T Consensus 119 ~~l~~-gd~l~l~TDGl~e~~~~ 140 (193)
T PF07228_consen 119 IQLEP-GDRLLLYTDGLFEALNE 140 (193)
T ss_dssp EE--T-TEEEEEECHHHCTTTCH
T ss_pred EEecc-ccEEEEeCCChhhccCC
Confidence 88888 99999999999999854
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=97.36 E-value=0.0059 Score=54.73 Aligned_cols=129 Identities=16% Similarity=0.137 Sum_probs=81.6
Q ss_pred ceEEEEEEcCCC-ChHHHHHHHH--HHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHhccCCCCCCCcceEEEEEE--eC
Q 025554 62 ELGLFAIYDGHL-GETVPAYLQK--HLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSSDLGRGGSTAVTAILI--NG 136 (251)
Q Consensus 62 ~~~~~~V~DG~G-G~~~a~~~~~--~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~tt~~~~~i--~~ 136 (251)
....++|.|..| |-.+|-.... .....+.... ..+ -...+..+|+.+....... .-+|+...++ ..
T Consensus 174 ~~~~i~I~DvsG~Gv~aal~m~~~~~~~~~~~~~~--~~~----p~~~l~~~n~~~~~~~~~~---~f~T~~~~~~d~~~ 244 (367)
T COG2208 174 KRLRIGIGDVSGKGVPAALLMLMPKLALRLLLESG--PLD----PADVLETLNRVLKQNLEED---MFVTLFLGVYDLDS 244 (367)
T ss_pred cEEEEEEEeccCCCHHHHHHHHHHHHHHHHhhhcc--cCC----HHHHHHHHHHHHHhcccCC---cEEEEEEEEEeccC
Confidence 457889999998 5555444221 1122222211 123 3445666777776654432 4455555554 37
Q ss_pred CeEEEEEecCceeEEeeCCce---EecCCCCCCCchHHHHHHcCCeeecCCCCCCCcCCcccccccccCcCCCCCceecc
Q 025554 137 QRLWVANVGDSRAVLSTAGVA---VQMTTDHEPNTERGSIEDKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDP 213 (251)
Q Consensus 137 ~~l~ianvGDsr~~l~r~g~~---~~lt~dh~~~~e~~ri~~~g~~~~~~~~~~~~~~~~~~ltr~lG~~~~k~~v~~~p 213 (251)
+.+..+|+|-=-.++++.++. ..++ .....+|... ...+
T Consensus 245 ~~l~y~~aGH~p~~i~~~~~~~~~~~l~---------------------------------~~g~piG~~~-----~~~~ 286 (367)
T COG2208 245 GELTYSNAGHEPALILSADGEIEVEDLT---------------------------------ALGLPIGLLP-----DYQY 286 (367)
T ss_pred CEEEEeeCCCCCeeEEEcCCCceeEEcc---------------------------------CCCceeeecC-----Cccc
Confidence 889999999999998887432 2222 2233566665 5677
Q ss_pred eEEEEEecCCCeEEEEEcCCCCCCC
Q 025554 214 DIQNTILDGRSDVLVLASDGLWKVS 238 (251)
Q Consensus 214 ~v~~~~l~~~~d~lil~SDGl~d~l 238 (251)
.+...++++ ||.++|.|||+.|.=
T Consensus 287 ~~~~~~l~~-gd~lvl~tDGv~Ea~ 310 (367)
T COG2208 287 EVASLQLEP-GDLLVLYTDGVTEAR 310 (367)
T ss_pred hheeEEecC-CCEEEEEcCCeeeee
Confidence 778888998 999999999999943
No 20
>PRK10693 response regulator of RpoS; Provisional
Probab=87.24 E-value=11 Score=32.67 Aligned_cols=91 Identities=11% Similarity=0.055 Sum_probs=50.6
Q ss_pred eEEEEEEc--CCCCh-HHHHHHHHHHHHHHHhccc-CCCCHHHHHHHHHHHHHHHHHhccCCCCCCCcceEEEEEEe--C
Q 025554 63 LGLFAIYD--GHLGE-TVPAYLQKHLFSNILKEEE-FWVDPQRSISKAYEKTDQAILSHSSDLGRGGSTAVTAILIN--G 136 (251)
Q Consensus 63 ~~~~~V~D--G~GG~-~~a~~~~~~l~~~~~~~~~-~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~tt~~~~~i~--~ 136 (251)
...|.++| |||++ -.|......++..++.... ............+..+|+.+....... . .|++..+++ .
T Consensus 163 ~~~~~~~DvsGhg~hg~~aa~l~~~~~~~~~~~~~~~~~~~~~~p~~~l~~lN~~l~~~~~~~---~-~t~~~~~~d~~~ 238 (303)
T PRK10693 163 DLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPG---Q-FPLLVGYYHREL 238 (303)
T ss_pred cEEEEEEecCCCCcccHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHhcCCCc---e-eeEEEEEEEcCC
Confidence 35556666 67777 3444555555554444321 000000124666678888887653222 1 344444443 5
Q ss_pred CeEEEEEecCceeEEeeCCce
Q 025554 137 QRLWVANVGDSRAVLSTAGVA 157 (251)
Q Consensus 137 ~~l~ianvGDsr~~l~r~g~~ 157 (251)
+++.++|.|-...++..++++
T Consensus 239 ~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 239 KNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred CeEEEEeCCCCCEEecCCeEE
Confidence 689999999999885444444
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=66.74 E-value=3.6 Score=27.82 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=16.2
Q ss_pred ecCCCeEEEEEcCCCCCCCCC
Q 025554 220 LDGRSDVLVLASDGLWKVSYF 240 (251)
Q Consensus 220 l~~~~d~lil~SDGl~d~l~~ 240 (251)
+...|+.+|+++||+|=-+..
T Consensus 23 l~~~G~Rllva~nGv~lEv~r 43 (72)
T PF09436_consen 23 LERPGHRLLVASNGVFLEVRR 43 (72)
T ss_pred cccCCcEEEEecCcEEEEEec
Confidence 343599999999999965543
No 22
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=39.04 E-value=26 Score=25.01 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCCCCCHHHHHHHhh
Q 025554 223 RSDVLVLASDGLWKVSYFFLNFLSLLA 249 (251)
Q Consensus 223 ~~d~lil~SDGl~d~l~~~~~~~~~~~ 249 (251)
++|.|+|+.||++-.+.....+.++..
T Consensus 24 ~~D~vlL~qdGV~aAl~~~~~~~sl~~ 50 (96)
T COG2168 24 EGDAVLLLQDGVYAALKGNRYLASLRE 50 (96)
T ss_pred ccCeEEEEcccchhhhcCcHHHHHHhc
Confidence 499999999999999988766666544
No 23
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=25.32 E-value=1.2e+02 Score=15.97 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=15.8
Q ss_pred EeCCeEEEEEecCceeEEe
Q 025554 134 INGQRLWVANVGDSRAVLS 152 (251)
Q Consensus 134 i~~~~l~ianvGDsr~~l~ 152 (251)
-.++.+|++-.|..|+..+
T Consensus 10 ~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 10 DSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp ETTSEEEEEECCCTEEEEE
T ss_pred eCCCCEEEEECCCCEEEEC
Confidence 3788999999999998754
No 24
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=21.24 E-value=3.5e+02 Score=24.10 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=18.8
Q ss_pred eEEEEEEcCCCCh---HHHHHHHHHHHHHHHhc
Q 025554 63 LGLFAIYDGHLGE---TVPAYLQKHLFSNILKE 92 (251)
Q Consensus 63 ~~~~~V~DG~GG~---~~a~~~~~~l~~~~~~~ 92 (251)
..=.+|+||..|. +.++=..+.+...+.++
T Consensus 222 ~~DVvV~DGFtGNv~LKt~EG~a~~i~~~lK~~ 254 (338)
T COG0416 222 TVDVVVTDGFTGNVVLKTAEGTAKFILSLLKEE 254 (338)
T ss_pred CCCEEEeCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999987 55554555555544433
No 25
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=20.98 E-value=95 Score=21.74 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=14.1
Q ss_pred EEEEEecCCCeEEEEEcCC
Q 025554 215 IQNTILDGRSDVLVLASDG 233 (251)
Q Consensus 215 v~~~~l~~~~d~lil~SDG 233 (251)
+...-+..+||.++|+||.
T Consensus 44 ~~L~YlDDEgD~VllT~D~ 62 (86)
T cd06409 44 YALSYVDDEGDIVLITSDS 62 (86)
T ss_pred ccEEEEcCCCCEEEEeccc
Confidence 3444566679999999996
No 26
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=20.63 E-value=1.7e+02 Score=16.22 Aligned_cols=18 Identities=28% Similarity=0.577 Sum_probs=14.5
Q ss_pred CCeEEEEEecCceeEEee
Q 025554 136 GQRLWVANVGDSRAVLST 153 (251)
Q Consensus 136 ~~~l~ianvGDsr~~l~r 153 (251)
+++||++|-|+-.+.++.
T Consensus 3 ~~~lyv~~~~~~~v~~id 20 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVID 20 (42)
T ss_pred CCEEEEEeCCCCEEEEEE
Confidence 567899998888887774
Done!