BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025555
(251 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49292|PPD4_ARATH PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis
thaliana GN=PPD4 PE=1 SV=2
Length = 260
Score = 329 bits (844), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 171/250 (68%), Positives = 195/250 (78%), Gaps = 5/250 (2%)
Query: 1 MGTTLFSSC---SFLAQISSVENGISRVKAVACSTGSDS-VDGVMKRRSVLVSGASLISS 56
M T L C S +IS+ + S + + D V+ RRSV+ SG + S+
Sbjct: 2 METALLRYCVNFSGHKKISAHQRSNSEIPKTSPGGCEDEWCARVLSRRSVMASGL-VSST 60
Query: 57 AVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSV 116
L FP +GLAVVKQGLLAGRVPGLSEPDE+GWRTYRRPD+KSGGHGVGWSPIIPY FSV
Sbjct: 61 TALAFPREGLAVVKQGLLAGRVPGLSEPDEEGWRTYRRPDEKSGGHGVGWSPIIPYAFSV 120
Query: 117 PQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKV 176
PQ+W+EVPVSIADLGGTEIDLRFASPK+GRL VIVAPVLRFAD+LGDD IE IG P KV
Sbjct: 121 PQDWNEVPVSIADLGGTEIDLRFASPKEGRLSVIVAPVLRFADNLGDDVKIENIGQPAKV 180
Query: 177 INAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNG 236
INAFGPEVIGENVEGKVLS +V E GR YY++ELEPPHVLITATAAGNRLYLFSVTGNG
Sbjct: 181 INAFGPEVIGENVEGKVLSSNVAEHDGRLYYQFELEPPHVLITATAAGNRLYLFSVTGNG 240
Query: 237 MVFYPTFCNI 246
+ + + ++
Sbjct: 241 LQWKRHYKDL 250
>sp|Q9LXX5|PPD6_ARATH PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis
thaliana GN=PPD6 PE=1 SV=1
Length = 262
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 26/211 (12%)
Query: 42 KRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGG 101
+RR +L+ A I A+L ++ ++ + +P LS D +P D
Sbjct: 41 RRRELLLKSAVAIP-AILQLKEAPISAAREVEVGSYLP-LSPSDPSFVLFKAKPSDTPAL 98
Query: 102 HGVGWSPIIPYLFSVPQEWDEVPVSIAD-LGGTE---------IDLRFASPKKGRLFVIV 151
+ PY F +P W ++ IA+ L G I+++F + K+G++ V+
Sbjct: 99 RAGN---VQPYQFVLPPNWKQL--RIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVA 153
Query: 152 APVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEG-KVLSMDVEELCGRKYYRYE 210
+P++R + +ATIE +G PEKVI + GP V G + + ++L +E++ + YY+Y
Sbjct: 154 SPLIRLTNK--PNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYV 211
Query: 211 LEPP------HVLITATAAGNRLYLFSVTGN 235
LE P H L ATA G+ + LF V+
Sbjct: 212 LETPFALTGSHNLAKATAKGSTVVLFVVSAT 242
>sp|P82658|TL19_ARATH Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis
thaliana GN=At3g63540 PE=1 SV=2
Length = 229
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 112 YLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIG 171
Y++ VP+ W E VS + G D F +PKK L F A ++
Sbjct: 86 YVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKK----TEKEYLTFL------AGFRQLA 135
Query: 172 PPEKVIN--AFGPEVIGENVEG--KVLSMDVEELCGRKYYRYELE--PPHVLITATAAGN 225
P + ++N A + + + G KV+S + ++ G+ YY YE++ H LIT T + N
Sbjct: 136 PRDVILNNLALSDVELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKN 195
Query: 226 RLYLFSVTG 234
RLY V
Sbjct: 196 RLYAHFVNA 204
>sp|O60494|CUBN_HUMAN Cubilin OS=Homo sapiens GN=CUBN PE=1 SV=5
Length = 3623
Score = 33.1 bits (74), Expect = 2.0, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 23/137 (16%)
Query: 121 DEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAF 180
+ P++ + + G + +RF S G A ++ G+D + G KV + F
Sbjct: 1814 NSFPLNYSSIVGHTLWVRFISDGSGSGTGFQATFMKI---FGNDNIV---GTHGKVASPF 1867
Query: 181 GPEVIGEN--------------VEGKVLSMDVEELCGRKYYR---YELEPPHVLITATAA 223
PE N V G++L MD+EE+ Y + Y+ H +
Sbjct: 1868 WPENYPHNSNYQWTVNVNASHVVHGRILEMDIEEIQNCYYDKLRIYDGPSIHARLIGAYC 1927
Query: 224 GNRLYLFSVTGNGMVFY 240
G + FS TGN + F+
Sbjct: 1928 GTQTESFSSTGNSLTFH 1944
>sp|Q8EHY2|GBPA_SHEON GlcNAc-binding protein A OS=Shewanella oneidensis (strain MR-1)
GN=gbpA PE=3 SV=2
Length = 475
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 26 KAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEP- 84
++ AC TGS+ G ++ V GAS GFP G A G +A G P
Sbjct: 37 RSYACKTGSNVNCGAVQWEPQSVEGAS-------GFPESGPA---DGKIASAANGAFSPL 86
Query: 85 DEQGWRTYRRPDDKSGGHGVGW 106
DEQ + + D KSG + W
Sbjct: 87 DEQSPSRWSKRDIKSGWNDFSW 108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,319,893
Number of Sequences: 539616
Number of extensions: 4723581
Number of successful extensions: 9421
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 9415
Number of HSP's gapped (non-prelim): 9
length of query: 251
length of database: 191,569,459
effective HSP length: 115
effective length of query: 136
effective length of database: 129,513,619
effective search space: 17613852184
effective search space used: 17613852184
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)