Query 025555
Match_columns 251
No_of_seqs 134 out of 212
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 12:41:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v2b_A 23-kDa polypeptide of p 100.0 3.2E-33 1.1E-37 239.5 11.7 139 85-250 5-171 (177)
2 2xb3_A PSBP protein; photosynt 100.0 6.8E-31 2.3E-35 219.9 13.6 139 86-250 5-159 (165)
3 2lnj_A SLL1418 protein, putati 99.9 5.8E-32 2E-36 228.7 0.0 141 87-250 12-164 (170)
4 1tu1_A Hypothetical protein PA 96.6 0.014 4.9E-07 47.4 10.0 119 109-248 8-134 (148)
5 2pq4_B Periplasmic nitrate red 69.1 1.6 5.5E-05 27.7 1.0 13 41-53 3-15 (35)
6 2jxw_A WW domain-binding prote 51.2 18 0.00061 25.7 4.1 27 216-242 47-73 (75)
7 2ysi_A Transcription elongatio 43.8 11 0.00036 24.2 1.6 24 220-243 15-38 (40)
8 1ywi_A Formin-binding protein 41.4 13 0.00043 23.9 1.7 23 220-242 17-39 (41)
9 1e0l_A Formin binding protein; 39.7 11 0.00039 23.5 1.3 23 221-243 12-34 (37)
10 1e0n_A Hypothetical protein; Y 39.7 7.8 0.00027 22.9 0.5 20 222-241 7-26 (27)
11 4exr_A Putative lipoprotein; Y 38.0 70 0.0024 26.3 6.3 37 172-212 33-69 (174)
12 4aay_B AROB; oxidoreductase, r 37.2 7.1 0.00024 32.6 0.0 20 40-59 9-28 (175)
13 3lyd_A Uncharacterized protein 36.4 1.8E+02 0.0061 23.9 12.1 108 111-240 19-142 (161)
14 3ld7_A LIN0431 protein; DUF131 34.7 86 0.003 23.8 5.9 39 199-237 12-62 (101)
15 4esn_A Hypothetical protein; p 34.4 1E+02 0.0035 23.6 6.3 39 199-237 22-65 (104)
16 4exr_A Putative lipoprotein; Y 33.8 83 0.0028 25.9 6.1 53 168-235 111-163 (174)
17 2kpp_A LIN0431 protein; soluti 31.6 1.2E+02 0.0043 23.4 6.4 40 199-238 12-63 (114)
18 2dk7_A Transcription elongatio 28.3 28 0.00097 25.5 2.0 33 216-248 21-53 (73)
19 2qqr_A JMJC domain-containing 25.4 71 0.0024 25.2 4.0 56 172-230 49-113 (118)
20 2jx8_A Hpcif1, phosphorylated 23.1 24 0.00082 23.8 0.7 21 223-243 22-42 (52)
21 1q90_R Cytochrome B6-F complex 21.6 56 0.0019 22.0 2.3 13 39-51 7-19 (49)
22 3mlq_E Transcription-repair co 21.4 1.2E+02 0.004 21.5 4.1 21 192-212 18-40 (71)
23 1kqr_A VP4; spike protein, out 21.2 1.1E+02 0.0036 26.0 4.4 38 200-237 101-139 (179)
No 1
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=100.00 E-value=3.2e-33 Score=239.47 Aligned_cols=139 Identities=20% Similarity=0.415 Sum_probs=113.8
Q ss_pred CCCCceEEecCCCCCCCCCCCCccccceEEecCCCCcccccccccCCCCceeEEEeCC--CCCcEEEEEEeeccccccCC
Q 025555 85 DEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASP--KKGRLFVIVAPVLRFADDLG 162 (251)
Q Consensus 85 ~~~gf~~y~~p~~~~Gg~g~~~~~i~~Y~F~~P~gW~ev~Vs~~d~~g~g~D~rF~d~--~~~~vsVvv~p~~rl~~~~~ 162 (251)
...||++|.. . +|+|+||++|+++++. +. +|+|++|+|+ .++||+|+|+|+
T Consensus 5 ~~~g~~~y~~----~-----------gysf~yP~~W~~~~~~--~~--~G~~~~f~d~~~~~~nvsV~v~p~-------- 57 (177)
T 1v2b_A 5 TDTDFQTYNG----D-----------GFKLQIPSKWNPNKEV--EY--PGQVLRFEDNFDATSNVIVAITPT-------- 57 (177)
T ss_dssp --CCEEEEEC----S-----------SEEEEEETTCEECCCC--CS--TTEEEEEEETTEEEEEEEEEEEEC--------
T ss_pred CCCCceEEec----C-----------CEEEEcCCCCcccccc--cC--CCceEEEeCCcCCCccEEEEEeCC--------
Confidence 3689999982 1 4999999999998884 33 4679999996 468999999999
Q ss_pred CCCCccccCCHHHHHHhhCccc----cCcc------------cccceeeeeeEEeCCeeeEEEEEc---------CCceE
Q 025555 163 DDATIEKIGPPEKVINAFGPEV----IGEN------------VEGKVLSMDVEELCGRKYYRYELE---------PPHVL 217 (251)
Q Consensus 163 ~~~sI~dLGspeev~~~l~~~l----~g~~------------~e~~ll~a~~~e~~G~tYY~yEl~---------~pH~L 217 (251)
++++|+|||+|++|++.++..| +... .+++|+++++++.+|++||+|||. .+|+|
T Consensus 58 ~~~si~dlGspe~~~~~v~~~l~~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l 137 (177)
T 1v2b_A 58 DKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQL 137 (177)
T ss_dssp SCSSGGGGCSHHHHHHHTGGGC------------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEE
T ss_pred CCCChhHCCCHHHHHHHHHHHHHHHhhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEE
Confidence 4489999999999766654333 3221 247999999999999999999995 23999
Q ss_pred EEEEEeCCeEEEEEeecCCccccch-hhhhcccc
Q 025555 218 ITATAAGNRLYLFSVTGNGMVFYPT-FCNIINAE 250 (251)
Q Consensus 218 ~saTV~~GkLYtl~v~a~e~rW~k~-~~~Lr~a~ 250 (251)
+++||++||||+|+++++|+||+++ ++.|++++
T Consensus 138 ~~~tv~~gkLY~l~~~a~e~~W~k~~~~~l~~v~ 171 (177)
T 1v2b_A 138 VTATVNDGKLYICKAQAGDKRWFKGAKKFVENTA 171 (177)
T ss_dssp EEEEEETTEEEEEEEEEEGGGCSTTTTHHHHHHH
T ss_pred EEEEEECCEEEEEEEecCHHHhhhhHHHHHHHHH
Confidence 9999999999999999999999996 99998763
No 2
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=99.97 E-value=6.8e-31 Score=219.92 Aligned_cols=139 Identities=20% Similarity=0.328 Sum_probs=121.4
Q ss_pred CCCceEEecCCCCCCCCCCCCccccceEEecCCCCcccccccccCCCCceeEEEeCC--CCCcEEEEEEeeccccccCCC
Q 025555 86 EQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASP--KKGRLFVIVAPVLRFADDLGD 163 (251)
Q Consensus 86 ~~gf~~y~~p~~~~Gg~g~~~~~i~~Y~F~~P~gW~ev~Vs~~d~~g~g~D~rF~d~--~~~~vsVvv~p~~rl~~~~~~ 163 (251)
..||++|.+|.. +|+|.||++|+++.+++ |+|++|+|+ ..++|+|+|.|+. +
T Consensus 5 ~~g~~~~~D~~~-------------gysf~~P~~W~~~~~~~------g~~v~f~d~~~~~~~v~V~v~p~~-------~ 58 (165)
T 2xb3_A 5 TSGLQAYVDSYD-------------GYEFLYPRGWVQVQVED------PVDVVFHDIIETTENVSVVVNTVA-------S 58 (165)
T ss_dssp -CCEEEEEETTT-------------TEEEEEETTEEEECCCT------TEEEEEEESSCTTSEEEEEEEECS-------S
T ss_pred CCCceEEEcCCC-------------CEEEEcCCCCeEecCCC------CceEEEECcccCCceEEEEEecCC-------C
Confidence 379999998743 59999999999988742 679999995 4679999999993 3
Q ss_pred CCCccccCCHHHHHHhhCccccCcc--c-ccceeeeeeEEeCCeeeEEEEEc----C-------CceEEEEEEeCCeEEE
Q 025555 164 DATIEKIGPPEKVINAFGPEVIGEN--V-EGKVLSMDVEELCGRKYYRYELE----P-------PHVLITATAAGNRLYL 229 (251)
Q Consensus 164 ~~sI~dLGspeev~~~l~~~l~g~~--~-e~~ll~a~~~e~~G~tYY~yEl~----~-------pH~L~saTV~~GkLYt 229 (251)
.++|+|||+|+++++.|++..++.+ . +++|++++.++.+|++||+|||. . +|+|+++||.+||||+
T Consensus 59 ~~~l~~~G~~e~va~~l~~~~~~~~~~~~~~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~g~lY~ 138 (165)
T 2xb3_A 59 TKSLEELGSPEEVGDRLLRNIIAPSESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSRGKVYT 138 (165)
T ss_dssp CCCSGGGCCHHHHHHHHHHHTTSCTTSSCEEEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEETTEEEE
T ss_pred CCChHHcCCHHHHHHHHHHHhhcCCCCCcceEEEEeeeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEECCEEEE
Confidence 5899999999999999998877654 3 67999999999999999999996 2 2999999999999999
Q ss_pred EEeecCCccccchhhhhcccc
Q 025555 230 FSVTGNGMVFYPTFCNIINAE 250 (251)
Q Consensus 230 l~v~a~e~rW~k~~~~Lr~a~ 250 (251)
|++++||+||.+++++|+++.
T Consensus 139 l~~sape~~w~~~~~~l~~v~ 159 (165)
T 2xb3_A 139 LSVSAPEERWPKVEDQFKTIV 159 (165)
T ss_dssp EEEEEEGGGHHHHHHHHHHHH
T ss_pred EEEecCHHHhHHHHHHHHHHH
Confidence 999999999999999998763
No 3
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=99.94 E-value=5.8e-32 Score=228.70 Aligned_cols=141 Identities=20% Similarity=0.297 Sum_probs=123.5
Q ss_pred CCceEEecCCCCCCCCCCCCccccceEEecCCCCcccccccccCCCCceeEEEeCCC--CCcEEEEEEeeccccccCCCC
Q 025555 87 QGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPK--KGRLFVIVAPVLRFADDLGDD 164 (251)
Q Consensus 87 ~gf~~y~~p~~~~Gg~g~~~~~i~~Y~F~~P~gW~ev~Vs~~d~~g~g~D~rF~d~~--~~~vsVvv~p~~rl~~~~~~~ 164 (251)
.||++|.++.. +|+|.||++|+++.+++ +++|+|++|+|+. ++||+|+|+|+. .+
T Consensus 12 ~g~~~y~d~~~-------------gy~f~~P~gW~~~~~~~---~~~g~~v~f~d~~~~~~nvsV~v~p~~-------~~ 68 (170)
T 2lnj_A 12 ASLQRYSDTKD-------------GYEFLYPNGWIGVDVKG---ASPGVDVVFRDLIERDENLSVIISEIP-------SD 68 (170)
Confidence 79999997643 49999999999988753 2356799999955 579999999994 35
Q ss_pred CCccccCCHHHHHHhhCccccCcc---cccceeeeeeEEeCCeeeEEEEEcC-------CceEEEEEEeCCeEEEEEeec
Q 025555 165 ATIEKIGPPEKVINAFGPEVIGEN---VEGKVLSMDVEELCGRKYYRYELEP-------PHVLITATAAGNRLYLFSVTG 234 (251)
Q Consensus 165 ~sI~dLGspeev~~~l~~~l~g~~---~e~~ll~a~~~e~~G~tYY~yEl~~-------pH~L~saTV~~GkLYtl~v~a 234 (251)
++|+|||+||+|++.|++.++..+ .+++|+++++++.+|++||+|||.. +|+|++++|.+||||+|.+++
T Consensus 69 ~si~d~G~pe~va~~l~~~~~~~~~~~~~a~li~a~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~gklY~l~~~a 148 (170)
T 2lnj_A 69 KTLTDLGTATDVGYRFMKTVNDASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNRGKLITFDLST 148 (170)
Confidence 999999999999999999877765 2689999999999999999999972 399999999999999999999
Q ss_pred CCccccchhhhhcccc
Q 025555 235 NGMVFYPTFCNIINAE 250 (251)
Q Consensus 235 ~e~rW~k~~~~Lr~a~ 250 (251)
||+||.+.+++|+++.
T Consensus 149 pe~~w~~~~~~l~~v~ 164 (170)
T 2lnj_A 149 AEDRWDTVKSLFDTVA 164 (170)
Confidence 9999999999998864
No 4
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=96.63 E-value=0.014 Score=47.35 Aligned_cols=119 Identities=7% Similarity=0.058 Sum_probs=71.9
Q ss_pred ccceEEecCCCCcccccccccCCCCceeEEEeCCC-CCcEEEEEEeeccccccCCCCCCccccCCHHHHHHhhCccccCc
Q 025555 109 IIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPK-KGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGE 187 (251)
Q Consensus 109 i~~Y~F~~P~gW~ev~Vs~~d~~g~g~D~rF~d~~-~~~vsVvv~p~~rl~~~~~~~~sI~dLGspeev~~~l~~~l~g~ 187 (251)
+.+++|.+|.+|++..+. ..++-++. .+..+++|+-.. +.+..+++++=. .-++.+. .
T Consensus 8 ~~Egsl~lP~gw~D~t~n---------v~~~~~~~~~g~~~lvIsR~~-----~~~~~~l~~~~~--~q~~~l~-----~ 66 (148)
T 1tu1_A 8 LHEADLEIPDAWQDQSIN---------IFKLPASGPAREASFVISRDA-----SQGDAPFADYVA--RQLENAE-----K 66 (148)
T ss_dssp CSSEEEEEETTSEECCBE---------EEEECCBTTBCCEEEEEEEEC-----CCTTSCHHHHHH--HHHHHHH-----H
T ss_pred ECCEEEeCCCCcEeeeEE---------EEEcCCCCCCCceEEEEEecc-----CCCCCCHHHHHH--HHHHHHH-----h
Confidence 346899999999966652 13333322 111666664331 123444444411 1112221 1
Q ss_pred cccc-ceeeeeeEEeCCeeeEEEEEc--C---C-ceEEEEEEeCCeEEEEEeecCCccccchhhhhcc
Q 025555 188 NVEG-KVLSMDVEELCGRKYYRYELE--P---P-HVLITATAAGNRLYLFSVTGNGMVFYPTFCNIIN 248 (251)
Q Consensus 188 ~~e~-~ll~a~~~e~~G~tYY~yEl~--~---p-H~L~saTV~~GkLYtl~v~a~e~rW~k~~~~Lr~ 248 (251)
.+.+ +++.....+.+|..--.+|+. . + |+...+.+..+++|+|+.+++..-|...+..++.
T Consensus 67 ~l~~y~~~~~~~~~l~g~~a~~~e~~~~~~g~~~~Q~q~~~~~~~~~l~~t~t~~~~~~~~~~~~~~~ 134 (148)
T 1tu1_A 67 QLPGFKLHKRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAWKQ 134 (148)
T ss_dssp HSTTCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGGGHHHHHHHHHH
T ss_pred hCcCcEEeeeEeEEEcCCcEEEEEEEEccCCEEEEEEEEEEEECCeEEEEEEEcCCCCCHHHHHHHHH
Confidence 1111 444555555678777777763 2 1 9999998887799999999999999988877754
No 5
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=69.10 E-value=1.6 Score=27.68 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=10.0
Q ss_pred chhhHHHHHHHHH
Q 025555 41 MKRRSVLVSGASL 53 (251)
Q Consensus 41 ~~RR~~L~~~~~~ 53 (251)
++||.+|-+.+++
T Consensus 3 lsRR~FLK~~aaa 15 (35)
T 2pq4_B 3 LSRRSFMKANAVA 15 (35)
T ss_dssp CCSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 6899999876543
No 6
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=51.20 E-value=18 Score=25.74 Aligned_cols=27 Identities=7% Similarity=0.140 Sum_probs=21.8
Q ss_pred eEEEEEEeCCeEEEEEeecCCccccch
Q 025555 216 VLITATAAGNRLYLFSVTGNGMVFYPT 242 (251)
Q Consensus 216 ~L~saTV~~GkLYtl~v~a~e~rW~k~ 242 (251)
.-......+||.|-.+..+++.+|.+-
T Consensus 47 ~W~~~~~~~Gr~YyyN~~T~~s~We~P 73 (75)
T 2jxw_A 47 VWVEGLSEDGFTYYYNTETGESRWEKP 73 (75)
T ss_dssp SEEEEEETTTEEEEEETTTTEEESSCC
T ss_pred cEEEEECCCCCEEEEECcCCCEeccCc
Confidence 344555668999999999999999864
No 7
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=43.81 E-value=11 Score=24.16 Aligned_cols=24 Identities=4% Similarity=0.185 Sum_probs=19.5
Q ss_pred EEEeCCeEEEEEeecCCccccchh
Q 025555 220 ATAAGNRLYLFSVTGNGMVFYPTF 243 (251)
Q Consensus 220 aTV~~GkLYtl~v~a~e~rW~k~~ 243 (251)
....+|+.|-+++.+.+.+|.+-.
T Consensus 15 ~~~~~G~~YYyN~~T~eS~We~P~ 38 (40)
T 2ysi_A 15 NKTPDGKVYYYNARTRESAWTKPD 38 (40)
T ss_dssp EECTTSCEEEEETTTCCEESSCCS
T ss_pred EECCCCCEEEEECCCCCEEeCCCC
Confidence 445788888899999999998754
No 8
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=41.38 E-value=13 Score=23.89 Aligned_cols=23 Identities=9% Similarity=0.234 Sum_probs=18.1
Q ss_pred EEEeCCeEEEEEeecCCccccch
Q 025555 220 ATAAGNRLYLFSVTGNGMVFYPT 242 (251)
Q Consensus 220 aTV~~GkLYtl~v~a~e~rW~k~ 242 (251)
....+|+.|-+++.+.+++|.+-
T Consensus 17 ~~~~~G~~YYyN~~T~eS~We~P 39 (41)
T 1ywi_A 17 HKSPDGRTYYYNTETKQSTWEKP 39 (41)
T ss_dssp EEETTTEEEEEETTTTEEEESCC
T ss_pred EECCCCCEEEEECCCCCEEeCCC
Confidence 34567888888899999999864
No 9
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=39.72 E-value=11 Score=23.48 Aligned_cols=23 Identities=9% Similarity=0.117 Sum_probs=18.5
Q ss_pred EEeCCeEEEEEeecCCccccchh
Q 025555 221 TAAGNRLYLFSVTGNGMVFYPTF 243 (251)
Q Consensus 221 TV~~GkLYtl~v~a~e~rW~k~~ 243 (251)
...+|+.|-+++.+.+++|.+-.
T Consensus 12 ~~~~G~~YYyN~~T~es~We~P~ 34 (37)
T 1e0l_A 12 KTADGKTYYYNNRTLESTWEKPQ 34 (37)
T ss_dssp ECTTSCEEEEETTTTEEESSCCS
T ss_pred ECCCCCEEEEECCCCCEEecCCC
Confidence 34568888889999999998754
No 10
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=39.68 E-value=7.8 Score=22.93 Aligned_cols=20 Identities=15% Similarity=0.381 Sum_probs=16.8
Q ss_pred EeCCeEEEEEeecCCccccc
Q 025555 222 AAGNRLYLFSVTGNGMVFYP 241 (251)
Q Consensus 222 V~~GkLYtl~v~a~e~rW~k 241 (251)
-+.|+.|-+++.+.++||.+
T Consensus 7 ~~~g~~YYyN~~T~~s~We~ 26 (27)
T 1e0n_A 7 HENGRPLYYNAEQKTKLHYP 26 (27)
T ss_dssp ESSSSEEEEETTTTEEESSC
T ss_pred CCCCCeEEEECCCCCEeccC
Confidence 35788888999999999974
No 11
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=38.04 E-value=70 Score=26.32 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=26.8
Q ss_pred CHHHHHHhhCccccCcccccceeeeeeEEeCCeeeEEEEEc
Q 025555 172 PPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELE 212 (251)
Q Consensus 172 speev~~~l~~~l~g~~~e~~ll~a~~~e~~G~tYY~yEl~ 212 (251)
|+++++..+....=| +.|.+++-...+|+..|.+|+.
T Consensus 33 s~e~A~~~a~~~~pg----a~I~~iele~~~G~~vYEVe~~ 69 (174)
T 4exr_A 33 PYTDAINIFKDKYKD----ADIVDLSLERDLNKFVYTVEGV 69 (174)
T ss_dssp CHHHHHHHHHHHSTT----CEEEEEEEEEETTEEEEEEEEE
T ss_pred CHHHHHHHHHHHCCC----CEEEEEEEEEeCCEEEEEEEEE
Confidence 788888877433222 2567777777899999999986
No 12
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=37.19 E-value=7.1 Score=32.56 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHhhhhcc
Q 025555 40 VMKRRSVLVSGASLISSAVL 59 (251)
Q Consensus 40 ~~~RR~~L~~~~~~aa~~~~ 59 (251)
.++||.+|.+++++++.++.
T Consensus 9 ~~~rr~fl~~~~~a~~~~~~ 28 (175)
T 4aay_B 9 DIGRRQFLRGGALAAAGATA 28 (175)
T ss_dssp --------------------
T ss_pred cccHHHHhhhhHHhhhheeE
Confidence 68999999976665554443
No 13
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=36.36 E-value=1.8e+02 Score=23.91 Aligned_cols=108 Identities=9% Similarity=0.045 Sum_probs=60.0
Q ss_pred ceEEecCCCCcccccccccCCCCceeEEEeC----CCCCcEEEEEEeeccccccCCCCCCccccCCHHHHHHhhCccccC
Q 025555 111 PYLFSVPQEWDEVPVSIADLGGTEIDLRFAS----PKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIG 186 (251)
Q Consensus 111 ~Y~F~~P~gW~ev~Vs~~d~~g~g~D~rF~d----~~~~~vsVvv~p~~rl~~~~~~~~sI~dLGspeev~~~l~~~l~g 186 (251)
++++..|.||+....-.. +-..=.+ ...-|+-|-+.-+ . .+ + .|+.-..+.. .++
T Consensus 19 ~~~v~~P~gWe~~~~~~~------~~~~~~~~~~~~F~pN~vVtv~r~---~------~~---~--~e~~r~el~~-~~~ 77 (161)
T 3lyd_A 19 GFTVPIPETWQPDPTMGT------QFAARPHTPPQGFTPNIIGTVRRA---A------TG---A--LHNQRTELDQ-RAT 77 (161)
T ss_dssp EEEEECCTTEEECTTSSS------SEEEEESSCCSSSCCEEEEEEEEE---C------TT---H--HHHHHHHHHH-HHT
T ss_pred eeeccCCCCceEcCCCCc------eEEeccCCCCCCccccEEEEEEec---C------cH---H--HHHHHHHHHH-HHh
Confidence 699999999999876321 1122222 1234565655444 2 11 1 3444333311 111
Q ss_pred ccc-ccceeeeeeEEeCCeeeEEEEEc--CC----c---eEEEEEEeCCeEEEE--EeecCCcccc
Q 025555 187 ENV-EGKVLSMDVEELCGRKYYRYELE--PP----H---VLITATAAGNRLYLF--SVTGNGMVFY 240 (251)
Q Consensus 187 ~~~-e~~ll~a~~~e~~G~tYY~yEl~--~p----H---~L~saTV~~GkLYtl--~v~a~e~rW~ 240 (251)
++ .=++++....+.+|..-|..||. .+ | ..+++.-.++..|++ .+++.+.+=.
T Consensus 78 -~lp~~~~~~r~~~~~~G~pa~~iey~y~~~~~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~~ 142 (161)
T 3lyd_A 78 -QLPDYAERGRTETTVDGFPAYHIEYAYRHHGTITIAQMITLVEVSHPHAVDIIQLTATCAGDQTA 142 (161)
T ss_dssp -TSTTCEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGHH
T ss_pred -hCCCcEeecccccccCCcccEEEEEEEecCCCceEeeEEEEEEEecCCEEEEEEEEEEeccccch
Confidence 11 11444556679999999999986 33 4 344555577888888 6666665443
No 14
>3ld7_A LIN0431 protein; DUF1312, PF07009, LKR112, NESG, structural genomics, PSI-2, protein structure initiative; 1.55A {Listeria innocua}
Probab=34.75 E-value=86 Score=23.79 Aligned_cols=39 Identities=10% Similarity=0.010 Sum_probs=30.3
Q ss_pred EEeCCeeeEEEEEcC---C--------c-eEEEEEEeCCeEEEEEeecCCc
Q 025555 199 EELCGRKYYRYELEP---P--------H-VLITATAAGNRLYLFSVTGNGM 237 (251)
Q Consensus 199 ~e~~G~tYY~yEl~~---p--------H-~L~saTV~~GkLYtl~v~a~e~ 237 (251)
-.++|+.|+.|.|.. + . ..-.+-|.+|++.+..+.+|++
T Consensus 12 I~vdGk~~~~i~L~~~~~~~~~~i~~~~G~~n~ieI~dg~vrv~es~CPdk 62 (101)
T 3ld7_A 12 ISQNGKVIREIPLTGHKGNEQFTIKGKGAQYNLMEVDGERIRIKEDNSPDQ 62 (101)
T ss_dssp EEETTEEEEEEECTTCBSEEEEEEECSTTCEEEEEEETTEEEEEEECCSSC
T ss_pred EEECCEEEEEEECCCCCCCEEEEEEcCCCCEEEEEEECCEEEEEECCCCCc
Confidence 457899999998862 1 1 1356789999999999999987
No 15
>4esn_A Hypothetical protein; protein of PF07009 family, DUF1312, structural genomics, JOI for structural genomics, JCSG; HET: PE4; 2.20A {Ruminococcus gnavus}
Probab=34.40 E-value=1e+02 Score=23.63 Aligned_cols=39 Identities=10% Similarity=-0.035 Sum_probs=30.7
Q ss_pred EEeCCeeeEEEEEcCCc-----eEEEEEEeCCeEEEEEeecCCc
Q 025555 199 EELCGRKYYRYELEPPH-----VLITATAAGNRLYLFSVTGNGM 237 (251)
Q Consensus 199 ~e~~G~tYY~yEl~~pH-----~L~saTV~~GkLYtl~v~a~e~ 237 (251)
-.++|+.|+.|.|.... ....+-|.+|++.+..+.+|++
T Consensus 22 I~vdGk~~~~i~L~~~~~i~i~g~n~IeI~dg~vrv~es~CPdk 65 (104)
T 4esn_A 22 VTVDGEVYGTYSLAKDQTIEIQDGNRLRIQNGQAKMEWADCPDQ 65 (104)
T ss_dssp EEETTEEEEEEETTSCEEEEETTTEEEEEETTEEEEEEECCSSC
T ss_pred EEECCEEEEEEECCCCcEEEECCcEEEEEECCEEEEEECCCCCc
Confidence 46799999999886441 1246689999999999999987
No 16
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=33.81 E-value=83 Score=25.87 Aligned_cols=53 Identities=15% Similarity=0.275 Sum_probs=34.9
Q ss_pred cccCCHHHHHHhhCccccCcccccceeeeeeEEeCCeeeEEEEEcCCceEEEEEEeCCeEEEEEeecC
Q 025555 168 EKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGN 235 (251)
Q Consensus 168 ~dLGspeev~~~l~~~l~g~~~e~~ll~a~~~e~~G~tYY~yEl~~pH~L~saTV~~GkLYtl~v~a~ 235 (251)
...-++++++....... .+.+++++-...+|+.||.+|+. .+|+.|-+.+-|.
T Consensus 111 ~~~is~~~A~~~Al~~~-----~G~v~e~eLd~d~G~~vYevei~----------~~~~~~ev~IDA~ 163 (174)
T 4exr_A 111 NDIMTPQQAMEIALKEQ-----NGIVKEWSLDKDLDVTFYKIRID----------KDKNEYDIKVDSK 163 (174)
T ss_dssp TTCCCHHHHHHHHHHHS-----CSEEEEEEEEEETTEEEEEEEEE----------ETTEEEEEEEETT
T ss_pred cCCcCHHHHHHHHHHhC-----CCeEEEEEEEEeCCEEEEEEEEE----------ECCEEEEEEEECC
Confidence 34457888776654433 24577777667799999999996 3456666655553
No 17
>2kpp_A LIN0431 protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG, function; NMR {Listeria innocua}
Probab=31.64 E-value=1.2e+02 Score=23.44 Aligned_cols=40 Identities=13% Similarity=0.042 Sum_probs=30.5
Q ss_pred EEeCCeeeEEEEEcCC------------ceEEEEEEeCCeEEEEEeecCCcc
Q 025555 199 EELCGRKYYRYELEPP------------HVLITATAAGNRLYLFSVTGNGMV 238 (251)
Q Consensus 199 ~e~~G~tYY~yEl~~p------------H~L~saTV~~GkLYtl~v~a~e~r 238 (251)
-.++|+.|+.|.|... .....+-|.+|++.+.-+.+|++-
T Consensus 12 I~vdGk~~~~i~L~~~~~~~~i~i~~~~G~~n~IeIkdg~vrv~es~CPdki 63 (114)
T 2kpp_A 12 ISQNGKVIREIPLTGHKGNEQFTIKGKGAQYNLMEVDGERIRIKEDNSPDQV 63 (114)
T ss_dssp EEETTEEEEEEECTTCCSEEEEEEEEETTEEEEEEEESSCEEEEEECCSSCH
T ss_pred EEECCEEEEEEECCCCCcceEEEEecCCCCEEEEEEECCEEEEEECCCCCee
Confidence 4679999999988522 124567889999999999998873
No 18
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.28 E-value=28 Score=25.50 Aligned_cols=33 Identities=9% Similarity=-0.002 Sum_probs=26.8
Q ss_pred eEEEEEEeCCeEEEEEeecCCccccchhhhhcc
Q 025555 216 VLITATAAGNRLYLFSVTGNGMVFYPTFCNIIN 248 (251)
Q Consensus 216 ~L~saTV~~GkLYtl~v~a~e~rW~k~~~~Lr~ 248 (251)
.-.-+...+||.|-++..+.++.|.+-.+..-.
T Consensus 21 ~W~~v~T~dGR~fyyN~~Tk~S~WekP~eLk~~ 53 (73)
T 2dk7_A 21 PWCVVWTGDERVFFYNPTTRLSMWDRPDDLIGR 53 (73)
T ss_dssp SCEEEEESSSCEEEEETTTTEECSSCCTTTTTC
T ss_pred CcEEEECCCCCEEEecCcccceeccCChHhcCH
Confidence 345567789999999999999999997776533
No 19
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=25.44 E-value=71 Score=25.25 Aligned_cols=56 Identities=25% Similarity=0.422 Sum_probs=38.4
Q ss_pred CHHHHH----HhhCccccCccc-----ccceeeeeeEEeCCeeeEEEEEcCCceEEEEEEeCCeEEEE
Q 025555 172 PPEKVI----NAFGPEVIGENV-----EGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLF 230 (251)
Q Consensus 172 speev~----~~l~~~l~g~~~-----e~~ll~a~~~e~~G~tYY~yEl~~pH~L~saTV~~GkLYtl 230 (251)
.||++. ..++|-..|+.+ ++.++.+.-+...-...|+-||+...+ +++.++.+|++
T Consensus 49 ~peDIvs~dc~~~GpP~~G~~V~V~W~DG~~y~a~f~g~~~~~~Y~V~feDgs~---~~~kR~~iyt~ 113 (118)
T 2qqr_A 49 YPEDIVSQDCLQFGPPAEGEVVQVRWTDGQVYGAKFVASHPIQMYQVEFEDGSQ---LVVKRDDVYTL 113 (118)
T ss_dssp CGGGBCSSCHHHHCCCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEETTSCE---EEECGGGEEET
T ss_pred CHhhcccccccccCCCCCCCEEEEEcCCCCEeeeEEeceeEEEEEEEEECCCCE---EEEcHHHeecc
Confidence 455543 334555556653 467888888887888999999985553 66788888764
No 20
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=23.13 E-value=24 Score=23.78 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=16.7
Q ss_pred eCCeEEEEEeecCCccccchh
Q 025555 223 AGNRLYLFSVTGNGMVFYPTF 243 (251)
Q Consensus 223 ~~GkLYtl~v~a~e~rW~k~~ 243 (251)
..|+.|-++..+.++||.+=.
T Consensus 22 ~~gr~YY~N~~T~~SqWe~P~ 42 (52)
T 2jx8_A 22 RENRPYYFNRFTNQSLWEMPV 42 (52)
T ss_dssp TTTEEEEEETTTTEEESSCCC
T ss_pred ccCCEEEEECCCCCEEeCCCC
Confidence 358888889999999998643
No 21
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=21.62 E-value=56 Score=22.02 Aligned_cols=13 Identities=15% Similarity=0.125 Sum_probs=10.1
Q ss_pred ccchhhHHHHHHH
Q 025555 39 GVMKRRSVLVSGA 51 (251)
Q Consensus 39 ~~~~RR~~L~~~~ 51 (251)
..++||++|..+.
T Consensus 7 pdm~RRqfln~l~ 19 (49)
T 1q90_R 7 PDMNKRNIMNLIL 19 (49)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHH
Confidence 4679999998654
No 22
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=21.38 E-value=1.2e+02 Score=21.51 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=17.6
Q ss_pred ceeeeeeEEeCC--eeeEEEEEc
Q 025555 192 KVLSMDVEELCG--RKYYRYELE 212 (251)
Q Consensus 192 ~ll~a~~~e~~G--~tYY~yEl~ 212 (251)
.+...++++++| +.||.+||.
T Consensus 18 ~~~gi~~~~v~g~~~ey~~l~y~ 40 (71)
T 3mlq_E 18 QYLGLETREVLGVKRDYLVLRYK 40 (71)
T ss_dssp EEEEEEEEEETTEEEEEEEEEET
T ss_pred EEeEEEEEEeCCeeEEEEEEEEC
Confidence 566778888888 789999996
No 23
>1kqr_A VP4; spike protein, outer capsid, sialic AC hemagglutinin, cell attachment, neutralization antigen, LEC galectin fold, viral protein; HET: MNA; 1.40A {Rhesus rotavirus} SCOP: b.29.1.14 PDB: 2p3k_A* 2p3i_A* 2p3j_A* 3sit_A* 3sis_A* 2i2s_A*
Probab=21.21 E-value=1.1e+02 Score=26.03 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=30.4
Q ss_pred EeCCeeeEEEE-EcCCceEEEEEEeCCeEEEEEeecCCc
Q 025555 200 ELCGRKYYRYE-LEPPHVLITATAAGNRLYLFSVTGNGM 237 (251)
Q Consensus 200 e~~G~tYY~yE-l~~pH~L~saTV~~GkLYtl~v~a~e~ 237 (251)
...+.+|..+- |.++|-|..+--.+||||++.-.+|..
T Consensus 101 ~s~~~~Y~~~~~L~S~tKL~a~mK~gGrl~ty~GeTPna 139 (179)
T 1kqr_A 101 TTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETPNV 139 (179)
T ss_dssp SSTTSCCEEEEEEEESSCCEEEEEETTEEEEEEEETTSC
T ss_pred ccCCcceEeecccccchheeeeEecCCEEEEEEccCCCc
Confidence 34567788876 457899999999999999998877643
Done!