BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025558
(251 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99JH1|RP25L_MOUSE Ribonuclease P protein subunit p25-like protein OS=Mus musculus
GN=Rpp25l PE=2 SV=1
Length = 163
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 1 MDRYQRV-------EKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAM 53
M++Y+R P + P + E+R+ ++RN + A L+ + +V
Sbjct: 1 MEQYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGS 60
Query: 54 GRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPL--EEGLLPLETTRHVSMITIT 111
GRA K V AE++KRR+ GLHQ T + D W P + GL PL RHV + +
Sbjct: 61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120
Query: 112 LSKKDLDTSSTGYQPP 127
LS+ LD S GYQPP
Sbjct: 121 LSRDPLDPSECGYQPP 136
>sp|Q8N5L8|RP25L_HUMAN Ribonuclease P protein subunit p25-like protein OS=Homo sapiens
GN=RPP25L PE=1 SV=1
Length = 163
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 10 PKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKR 69
P + P + E+R+ ++RN + A L+ + +V GRA K V AE++KR
Sbjct: 17 PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76
Query: 70 RIAGLHQNTSIGSTDITDMWEPL--EEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPP 127
R+ GLHQ T + D W P + GL PL RHV + + LS+ LD + GYQPP
Sbjct: 77 RVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136
>sp|Q9BUL9|RPP25_HUMAN Ribonuclease P protein subunit p25 OS=Homo sapiens GN=RPP25 PE=1
SV=1
Length = 199
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 20 EIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTS 79
+R+ ++RN + +AT + + + IV GRA KTV AE++KRR+AGLHQ T
Sbjct: 37 HMRVKEGSKIRNLMAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTR 96
Query: 80 IGSTDITDMWEPLE----EGLLP------LETTRHVSMITITLSKKDLDTSSTGYQPPLP 129
+ + ++W+ L +G P L ++V + I LSK LD GYQPP P
Sbjct: 97 LRYRSVREVWQSLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNP 156
>sp|Q5PPN2|RPP25_RAT Ribonuclease P protein subunit p25 OS=Rattus norvegicus GN=Rpp25
PE=2 SV=1
Length = 199
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 20 EIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTS 79
+R+ ++RN + +AT + + + IV GRA KTV AE++KRR+AGLHQ T
Sbjct: 37 HMRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTR 96
Query: 80 IGSTDITDMWEPL----------EEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPP 127
+ + ++W+ L + L ++V + I LSK LD GYQPP
Sbjct: 97 LRYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPP 154
>sp|Q91WE3|RPP25_MOUSE Ribonuclease P protein subunit p25 OS=Mus musculus GN=Rpp25 PE=2
SV=1
Length = 199
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 21 IRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSI 80
+R+ ++RN + +AT + + + IV GRA KTV AE++KRR+AGLHQ T +
Sbjct: 38 MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97
Query: 81 GSTDITDMWEPL----------EEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPP 127
+ ++W+ L + L ++V + I LSK LD GYQPP
Sbjct: 98 RYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPP 154
>sp|Q2KIR4|RP25L_BOVIN Ribonuclease P protein subunit p25-like protein OS=Bos taurus
GN=RPP25L PE=2 SV=1
Length = 163
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 10 PKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKR 69
P + P + E+R+ ++RN + A L+ + +V GRA K V AE++KR
Sbjct: 17 PMPQLPPDTLEMRVRAGSKIRNLLGLALERLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76
Query: 70 RIAGLHQNTSIGSTDITDMWEPL--EEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPP 127
R+ GL+Q T + D W P + GL PL HV + + LS+ LD + GYQPP
Sbjct: 77 RVPGLYQLTKLRFLQTEDSWVPTSPDTGLDPLTVRSHVPAVWVLLSRDPLDPNEYGYQPP 136
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,298,081
Number of Sequences: 539616
Number of extensions: 6297235
Number of successful extensions: 53193
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 751
Number of HSP's that attempted gapping in prelim test: 20045
Number of HSP's gapped (non-prelim): 11850
length of query: 251
length of database: 191,569,459
effective HSP length: 115
effective length of query: 136
effective length of database: 129,513,619
effective search space: 17613852184
effective search space used: 17613852184
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)