Query 025558
Match_columns 251
No_of_seqs 168 out of 363
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 12:45:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025558.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025558hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h9u_A DNA/RNA-binding protein 99.9 8.7E-26 3E-30 178.7 12.6 92 18-117 6-100 (102)
2 1nfj_A ALBA, conserved hypothe 99.9 7.6E-25 2.6E-29 169.4 12.4 86 17-114 2-89 (89)
3 2bky_A DNA/RNA-binding protein 99.9 1.1E-24 3.7E-29 171.0 12.8 89 15-115 6-97 (97)
4 1nh9_A MJA10B, DNA-binding pro 99.9 1.7E-24 5.7E-29 166.9 11.7 84 18-114 2-87 (87)
5 3toe_A MTH10B, DNA/RNA-binding 99.9 2.8E-22 9.6E-27 155.7 11.1 89 17-115 3-91 (91)
6 2bky_X DNA/RNA-binding protein 99.8 5.8E-21 2E-25 147.8 10.6 84 17-115 5-88 (89)
7 1vm0_A Unknown protein; struct 99.7 6E-18 2E-22 138.9 10.9 91 15-116 17-108 (130)
8 3iab_B Ribonucleases P/MRP pro 99.7 3.8E-17 1.3E-21 135.4 13.3 109 5-114 13-140 (140)
9 3iab_A Ribonucleases P/MRP pro 98.1 3.8E-05 1.3E-09 64.6 11.3 92 20-116 46-146 (158)
10 1b34_A Protein (small nuclear 91.8 0.031 1.1E-06 44.4 0.0 8 103-110 53-60 (119)
11 2ek0_A Stage V sporulation pro 90.3 4.9 0.00017 30.7 11.4 51 19-71 2-53 (90)
12 2k9u_B Filamin-binding LIM pro 50.5 11 0.00037 22.4 2.3 18 101-118 6-23 (26)
13 3pam_A Transmembrane protein; 30.6 1E+02 0.0034 25.5 6.2 53 31-86 100-166 (259)
14 1qys_A TOP7; alpha-beta, novel 28.9 1.1E+02 0.0039 22.9 5.4 55 20-74 20-74 (106)
15 3fkj_A Putative phosphosugar i 25.7 1.2E+02 0.0041 27.1 6.2 50 21-70 15-65 (347)
16 3eua_A Putative fructose-amino 25.3 1.2E+02 0.0041 26.8 6.0 47 29-75 9-55 (329)
17 1lxn_A Hypothetical protein MT 23.0 42 0.0014 25.3 2.1 50 26-76 15-66 (99)
18 3sho_A Transcriptional regulat 21.0 1.7E+02 0.0059 22.7 5.6 37 31-69 27-63 (187)
No 1
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=99.93 E-value=8.7e-26 Score=178.71 Aligned_cols=92 Identities=36% Similarity=0.540 Sum_probs=84.7
Q ss_pred CCeEEEcCCCchHHHHHHHH-HHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHh-cCce-eeeEEEEEEeccccccccc
Q 025558 18 ENEIRITTQGRMRNYITYAT-TLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRI-AGLH-QNTSIGSTDITDMWEPLEE 94 (251)
Q Consensus 18 ~NeIrVt~k~~i~~yV~~Al-~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi-~GLh-Q~t~I~sv~i~d~~ePleE 94 (251)
+|+|+|++|+.| +||.+|+ .||++ ++++|+|||+|+||+|||+||||||+|| ++|| |.++|+|.++.|+|+ +
T Consensus 6 ~n~I~V~~k~~~-nyV~~a~~~ll~~-g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e---~ 80 (102)
T 2h9u_A 6 APEVRIGRKPVM-NYVLAILTTLMEQ-GTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTP---E 80 (102)
T ss_dssp CCEEECCSSCHH-HHHHHHHHHHTST-TCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECT---T
T ss_pred CCEEEEcCCCHH-HHHHHHHHHHHhC-CCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEecccc---C
Confidence 599999999885 9999999 99994 8999999999999999999999999999 8999 999999999999854 5
Q ss_pred CCCcceeeeeeeEEEEEEecCCC
Q 025558 95 GLLPLETTRHVSMITITLSKKDL 117 (251)
Q Consensus 95 Gld~~~~~R~VS~I~ItLSk~~l 117 (251)
|+ ..+|+||+|+|+|+++|.
T Consensus 81 g~---~~~r~vS~IeI~Lsk~~~ 100 (102)
T 2h9u_A 81 GQ---TRTRRVSSIEICLEKAGE 100 (102)
T ss_dssp SC---EEEEEEEEEEEEEEECSS
T ss_pred Cc---cceeEeeeEEEEEEccCC
Confidence 63 379999999999999875
No 2
>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*
Probab=99.92 E-value=7.6e-25 Score=169.40 Aligned_cols=86 Identities=34% Similarity=0.601 Sum_probs=78.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHh-cCce-eeeEEEEEEeccccccccc
Q 025558 17 NENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRI-AGLH-QNTSIGSTDITDMWEPLEE 94 (251)
Q Consensus 17 ~~NeIrVt~k~~i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi-~GLh-Q~t~I~sv~i~d~~ePleE 94 (251)
.+|+|+|++|+ +.+||.+|+.||++ ++++|+|||+|+||+|||+||||||+|+ ++|| |.++|+|.++.| +|
T Consensus 2 ~~n~I~V~~k~-v~~yV~~~~~~l~~-g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~-----e~ 74 (89)
T 1nfj_A 2 AEHVVYVGNKP-VMNYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELES-----EQ 74 (89)
T ss_dssp -CEEEECCSSC-HHHHHHHHHHHHHT-TCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCC-----BT
T ss_pred CCCEEEEcCCC-HHHHHHHHHHHHhC-CCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEc-----CC
Confidence 57999999998 66999999999995 8999999999999999999999999999 8899 999999888765 35
Q ss_pred CCCcceeeeeeeEEEEEEec
Q 025558 95 GLLPLETTRHVSMITITLSK 114 (251)
Q Consensus 95 Gld~~~~~R~VS~I~ItLSk 114 (251)
| .+|+||+|+|+|+|
T Consensus 75 g-----~~r~vs~IeI~L~k 89 (89)
T 1nfj_A 75 G-----RRSNVSTIEIVLAK 89 (89)
T ss_dssp T-----BCCEEEEEEEEEEC
T ss_pred C-----cEEEeeEEEEEEEC
Confidence 5 78999999999986
No 3
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A
Probab=99.92 E-value=1.1e-24 Score=171.01 Aligned_cols=89 Identities=37% Similarity=0.552 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhcC--c-eeeeEEEEEEecccccc
Q 025558 15 PINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAG--L-HQNTSIGSTDITDMWEP 91 (251)
Q Consensus 15 p~~~NeIrVt~k~~i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi~G--L-hQ~t~I~sv~i~d~~eP 91 (251)
+.++|+|+|++|+ +.+||.+|+.||++ ++++|+|||+|+||+|||+||||||+|+.+ | ||.++|+|.++.|+
T Consensus 6 ~~~~n~I~V~~k~-v~~YV~~a~~ll~~-g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~e--- 80 (97)
T 2bky_A 6 PTPSNVVLIGKKP-VMNYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTSQ--- 80 (97)
T ss_dssp ---CCEEECCSSC-HHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEET---
T ss_pred CCCCCEEEEcCcC-HHHHHHHHHHHHhC-CCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEecC---
Confidence 5578999999998 88999999999995 899999999999999999999999999955 8 89999999998773
Q ss_pred cccCCCcceeeeeeeEEEEEEecC
Q 025558 92 LEEGLLPLETTRHVSMITITLSKK 115 (251)
Q Consensus 92 leEGld~~~~~R~VS~I~ItLSk~ 115 (251)
|| .+|+||+|+|+|+++
T Consensus 81 --~G-----~~r~vS~IeI~L~k~ 97 (97)
T 2bky_A 81 --DG-----RQSRVSTIEIAIRKK 97 (97)
T ss_dssp --TS-----CEEEEEEEEEEEEEC
T ss_pred --CC-----cEEEeeEEEEEEEcC
Confidence 55 789999999999974
No 4
>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1
Probab=99.91 E-value=1.7e-24 Score=166.86 Aligned_cols=84 Identities=33% Similarity=0.567 Sum_probs=73.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHh-cCce-eeeEEEEEEecccccccccC
Q 025558 18 ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRI-AGLH-QNTSIGSTDITDMWEPLEEG 95 (251)
Q Consensus 18 ~NeIrVt~k~~i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi-~GLh-Q~t~I~sv~i~d~~ePleEG 95 (251)
+|+|+|++| ++.+||.+|+.||++ + ++|+|||+|+||+|||+||||||+|+ ++|| |.++|+|.++.|+ +|
T Consensus 2 ~n~I~V~~k-~v~~YV~~~~~~l~~-g-~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~e-----~g 73 (87)
T 1nh9_A 2 DNVVLIGKK-PVMNYVVAVLTQLTS-N-DEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKNP-----DG 73 (87)
T ss_dssp CSEEEECSS-CHHHHHHHHHHHHHH-C-SEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC-----------
T ss_pred CCEEEEeCc-chHHHHHHHHHHhcC-C-CEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEcC-----CC
Confidence 699999999 888999999999996 6 99999999999999999999999999 7799 9999999998773 45
Q ss_pred CCcceeeeeeeEEEEEEec
Q 025558 96 LLPLETTRHVSMITITLSK 114 (251)
Q Consensus 96 ld~~~~~R~VS~I~ItLSk 114 (251)
.+|+||+|+|+|+|
T Consensus 74 -----~~r~vS~IeI~L~k 87 (87)
T 1nh9_A 74 -----REVNVSTIEIVLAK 87 (87)
T ss_dssp ------CCCEEEEEEEEEC
T ss_pred -----cEEEeeEEEEEEEC
Confidence 78999999999986
No 5
>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.88 E-value=2.8e-22 Score=155.72 Aligned_cols=89 Identities=34% Similarity=0.445 Sum_probs=79.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhcCceeeeEEEEEEecccccccccCC
Q 025558 17 NENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGL 96 (251)
Q Consensus 17 ~~NeIrVt~k~~i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi~GLhQ~t~I~sv~i~d~~ePleEGl 96 (251)
++|.|+|++|+- .+||.+|+.||++ ++++|+|||+|+||+|||+|||+||+||.. .+++++++|.++|.+.++|
T Consensus 3 ~~~vv~vg~Kpv-~~YV~~~i~~~n~-g~~eV~ikA~G~aIskAVdvaei~k~R~~~---~v~v~~I~I~se~~~~e~G- 76 (91)
T 3toe_A 3 EENVVYIGNKPV-MNYVLAVVTQMNG-GTSEVILKARGIAISRAVDVAEIVRNRFIP---DIQIENIDICTEEIIGNEG- 76 (91)
T ss_dssp --CCEECCSSCH-HHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHTCT---TCEEEEEEEEEEEEECTTS-
T ss_pred ccCEEEECCCcH-HHHHHHHHHHHhC-CCCEEEEEEehhHHHHHHHHHHHHHHhccC---CcEEEEEEeeeEEeecCCC-
Confidence 468999998854 5999999999994 899999999999999999999999999853 5789999999999999998
Q ss_pred CcceeeeeeeEEEEEEecC
Q 025558 97 LPLETTRHVSMITITLSKK 115 (251)
Q Consensus 97 d~~~~~R~VS~I~ItLSk~ 115 (251)
.+|+||+|+|+|+|+
T Consensus 77 ----~~r~VS~IeI~L~k~ 91 (91)
T 3toe_A 77 ----TATNVSAIEIQLRKD 91 (91)
T ss_dssp ----SEEEEEEEEEEEEC-
T ss_pred ----ceeEeeEEEEEEECC
Confidence 899999999999984
No 6
>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A
Probab=99.84 E-value=5.8e-21 Score=147.77 Aligned_cols=84 Identities=21% Similarity=0.294 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhcCceeeeEEEEEEecccccccccCC
Q 025558 17 NENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGL 96 (251)
Q Consensus 17 ~~NeIrVt~k~~i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi~GLhQ~t~I~sv~i~d~~ePleEGl 96 (251)
++|+|+|+++ ++.+||.+|+.||++ ++++|+|||+|+||+|||+|||+||+||.+++|. .++++.++ +
T Consensus 5 ~~~iv~vg~k-pv~nYV~~~~~~ln~-g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~i---~~i~i~se-----~-- 72 (89)
T 2bky_X 5 LNEIVVRKTK-NVEDHVLDVIVLFNQ-GIDEVILKGTGREISKAVDVYNSLKDRLGDGVQL---VNVQTGSE-----V-- 72 (89)
T ss_dssp CEEEECCTTS-CHHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEE-----E--
T ss_pred CCCEEEECCC-CHHHHHHHHHHHHhC-CCCEEEEEEechHHHHHHHHHHHHHHhccCceEE---EEEEeccc-----c--
Confidence 4677888877 777999999999995 8999999999999999999999999999887664 44444332 1
Q ss_pred CcceeeeeeeEEEEEEecC
Q 025558 97 LPLETTRHVSMITITLSKK 115 (251)
Q Consensus 97 d~~~~~R~VS~I~ItLSk~ 115 (251)
..+|+||+|+|+|+++
T Consensus 73 ---~~~r~VS~IeI~L~k~ 88 (89)
T 2bky_X 73 ---RDRRRISYILLRLKRV 88 (89)
T ss_dssp ---ETTEEEEEEEEEEEEC
T ss_pred ---CcceEeeeEEEEEEec
Confidence 3789999999999974
No 7
>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A
Probab=99.75 E-value=6e-18 Score=138.87 Aligned_cols=91 Identities=24% Similarity=0.348 Sum_probs=71.9
Q ss_pred CCCCCeEEEcC-CCchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhcCceeeeEEEEEEecccccccc
Q 025558 15 PINENEIRITT-QGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLE 93 (251)
Q Consensus 15 p~~~NeIrVt~-k~~i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi~GLhQ~t~I~sv~i~d~~ePle 93 (251)
+.++|+|+|+. +.++.+||.+|+.+|+ ++++|+|||||+||++||+||||||+|+-..++.+.|++.++.++
T Consensus 17 ~~~~N~I~Vs~~kkP~~nYV~~a~~~l~--g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI~t~t~~i~~~----- 89 (130)
T 1vm0_A 17 SQKKNRIQVSNTKKPLFFYVNLAKRYMQ--QYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDD----- 89 (130)
T ss_dssp --CTTEEECCCTTSCHHHHHHHHHHHHH--HHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC-------
T ss_pred CCCCCEEEEecCCCCceeHHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEEEeeeEEeccC-----
Confidence 44689999996 3667799999999998 489999999999999999999999999766666777788777554
Q ss_pred cCCCcceeeeeeeEEEEEEecCC
Q 025558 94 EGLLPLETTRHVSMITITLSKKD 116 (251)
Q Consensus 94 EGld~~~~~R~VS~I~ItLSk~~ 116 (251)
++ ....++|.|+|+|.+.+
T Consensus 90 ~~----~r~v~~skIEI~L~k~~ 108 (130)
T 1vm0_A 90 AR----GRPVQKAKIEITLVKSE 108 (130)
T ss_dssp --------CEEEEEEEEEEEECT
T ss_pred CC----CcccccceEEEEEEecC
Confidence 11 14456799999999864
No 8
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=3.8e-17 Score=135.39 Aligned_cols=109 Identities=15% Similarity=0.177 Sum_probs=87.1
Q ss_pred eeccCCCCCCCCC----CCeEEEcCCCchHHHHHHHHHHHhh---cCCCeEEEEEcChhHHHHHHHHHHHHHHhcCceee
Q 025558 5 QRVEKPKAEAPIN----ENEIRITTQGRMRNYITYATTLLQE---KGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQN 77 (251)
Q Consensus 5 ~rv~kp~~~~p~~----~NeIrVt~k~~i~~yV~~Al~LL~~---~g~~eVvIkg~G~AIsKAV~VAEILKrRi~GLhQ~ 77 (251)
+.+.++-+..|.. +|+|||+++++|.+.|..|.+||++ .+.++|+|||||+||+|||+||..|+++. ++.-.
T Consensus 13 k~irk~P~~k~~s~~~~~~~iYV~skTpf~S~vkRi~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq~~~-~~~V~ 91 (140)
T 3iab_B 13 KRVTKHPSLKTLTHKQIHTTIFVKSTTPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQK-NKKIE 91 (140)
T ss_dssp -CCEECCCCCCCCHHHHTTEEECCSSCCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHHHTT-CCCEE
T ss_pred CccCCCCCCcCccccccCceEEEecCCchHHHHHHHHHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHhhcC-CEEEE
Confidence 3444443344443 7999999999999999999999985 16899999999999999999999999974 68889
Q ss_pred eEEEEEEecccccccccC------------CCcceeeeeeeEEEEEEec
Q 025558 78 TSIGSTDITDMWEPLEEG------------LLPLETTRHVSMITITLSK 114 (251)
Q Consensus 78 t~I~sv~i~d~~ePleEG------------ld~~~~~R~VS~I~ItLSk 114 (251)
+.++||++.|+++|.++. .+...++|+||+|||.|+.
T Consensus 92 V~T~TV~vvDd~~~~~~~~~~~d~~~~d~d~e~~~rkR~vS~VeirIy~ 140 (140)
T 3iab_B 92 VYTKTIEVLDEVITEGQADIDMESDVEDDDKETQLKKRAVSGVELRIYV 140 (140)
T ss_dssp EEEEEEEEEEECC--------------------CEEEEEEEEEEEEEEC
T ss_pred EEeceEEEEEeeeecCCcccccccccccccccchheeeeeeeEEEEEeC
Confidence 999999999999998765 4678999999999999863
No 9
>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=98.06 E-value=3.8e-05 Score=64.62 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=70.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHhh-----cCCCeEEEEEcChhHHHHHHHHHHHHHHh----cCceeeeEEEEEEeccccc
Q 025558 20 EIRITTQGRMRNYITYATTLLQE-----KGSNEIVLKAMGRAINKTVMIAELIKRRI----AGLHQNTSIGSTDITDMWE 90 (251)
Q Consensus 20 eIrVt~k~~i~~yV~~Al~LL~~-----~g~~eVvIkg~G~AIsKAV~VAEILKrRi----~GLhQ~t~I~sv~i~d~~e 90 (251)
.+.|+++..|+..|+.-.++|+. ...+.|.|.+.|..|.|+|++.||+|..+ +.|||++++.+......-
T Consensus 46 ~~kIsKNDnIK~~V~kL~~~l~~~~~s~~~~~~V~l~syg~hIQKmLSIvEI~Kk~~~~~~~~l~Q~NkL~~f~~v~~g- 124 (158)
T 3iab_A 46 YHGISKNDNIKKSVNKLDKQINMADRSLGLQQVVCIFSYGPHIQKMLSILEIFKKGYIKNNKKIYQWNKLTSFDIKREG- 124 (158)
T ss_dssp EEECCTTCCHHHHHHHHHHHHTCSCTTTTCEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEEC----
T ss_pred EEEeccCchHHHHHHHHHHHHhhhccccccCceEEEEecChHHHHHHHHHHHHHHHhhcCCccHHHHhhhhhhccCCcc-
Confidence 34499999999999999998851 14689999999999999999999999987 249999999988654321
Q ss_pred ccccCCCcceeeeeeeEEEEEEecCC
Q 025558 91 PLEEGLLPLETTRHVSMITITLSKKD 116 (251)
Q Consensus 91 PleEGld~~~~~R~VS~I~ItLSk~~ 116 (251)
-.. -++++-+||-+-+.+++++
T Consensus 125 --rNE--Lle~r~~vPILi~~i~~~~ 146 (158)
T 3iab_A 125 --RNE--LQEERLKVPILVTMVSDSE 146 (158)
T ss_dssp --------CCCCEEEEEEEEEEESSS
T ss_pred --ccH--HHHhhcCCCEEEEEEeccc
Confidence 111 1456678888888888764
No 10
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=91.77 E-value=0.031 Score=44.40 Aligned_cols=8 Identities=13% Similarity=0.372 Sum_probs=3.9
Q ss_pred eeeeEEEE
Q 025558 103 RHVSMITI 110 (251)
Q Consensus 103 R~VS~I~I 110 (251)
+++..|.|
T Consensus 53 ~~lg~v~I 60 (119)
T 1b34_A 53 VQLETLSI 60 (119)
T ss_dssp EEEEEEEE
T ss_pred eEcceEEE
Confidence 44555544
No 11
>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A
Probab=90.34 E-value=4.9 Score=30.74 Aligned_cols=51 Identities=20% Similarity=0.410 Sum_probs=37.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHhhcCCCeEEEEEcC-hhHHHHHHHHHHHHHHh
Q 025558 19 NEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMG-RAINKTVMIAELIKRRI 71 (251)
Q Consensus 19 NeIrVt~k~~i~~yV~~Al~LL~~~g~~eVvIkg~G-~AIsKAV~VAEILKrRi 71 (251)
+.+.|+++++-......--.+|.+ ...|.|.++| .|+|.||.-.-|-+.-+
T Consensus 2 e~LKVSs~S~P~~VAGAIA~~lRe--~~~veiqAIGa~AvNqAVKAIAIARg~l 53 (90)
T 2ek0_A 2 ETLRVSSKSRPNSVAGAIAAMLRT--KGEVEVQAIGPQAVNQAVKAIAIARGYI 53 (90)
T ss_dssp CEEEECTTCCHHHHHHHHHHHHHH--HSEEEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEcCCCChHHHHHHHHHHHhc--CCceEEEEECHHHHHHHHHHHHHHHHhh
Confidence 468999999985555444446766 4599999999 79999988666555554
No 12
>2k9u_B Filamin-binding LIM protein 1; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=50.51 E-value=11 Score=22.44 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=14.2
Q ss_pred eeeeeeEEEEEEecCCCC
Q 025558 101 TTRHVSMITITLSKKDLD 118 (251)
Q Consensus 101 ~~R~VS~I~ItLSk~~lD 118 (251)
.+|.+|+|.|||..--.|
T Consensus 6 eKR~aSSvFITLapp~r~ 23 (26)
T 2k9u_B 6 EKRVASSVFITLAPPRRD 23 (26)
T ss_dssp SSSCEEEEEEEECCSSCC
T ss_pred hhheeeeEEEEecCcccc
Confidence 579999999999864433
No 13
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=30.57 E-value=1e+02 Score=25.46 Aligned_cols=53 Identities=19% Similarity=0.150 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhcCCC--------------eEEEEEcChhHHHHHHHHHHHHHHhcCceeeeEEEEEEec
Q 025558 31 NYITYATTLLQEKGSN--------------EIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDIT 86 (251)
Q Consensus 31 ~yV~~Al~LL~~~g~~--------------eVvIkg~G~AIsKAV~VAEILKrRi~GLhQ~t~I~sv~i~ 86 (251)
.=+..|.+||.+.+.+ +|.|.... +....+|++|+..+..+--.++|..++..
T Consensus 100 ~d~~kAk~LL~eaG~~~~~~g~~~~~G~~l~l~~~~~~---~~~~~~a~~iq~~l~~iGI~v~i~~~~~~ 166 (259)
T 3pam_A 100 LNAQKAWKLLQEAGFTKKNNRLIAPNGLPFQFEIMTQS---LEEEKVALAFQSNLSRLGIHAEIRTVDDS 166 (259)
T ss_dssp HHHHHHHHHHHHTTCEEETTEEECTTSCBCEEEEEESS---HHHHHHHHHHHHHHHTTTCEEEEEECCHH
T ss_pred cCHHHHHHHHHHcCCccCCCcEECCCCcEEEEEEEeCC---chHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 3478999999875553 45555432 45567888888887655545666655543
No 14
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=28.93 E-value=1.1e+02 Score=22.94 Aligned_cols=55 Identities=13% Similarity=0.293 Sum_probs=46.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhcCc
Q 025558 20 EIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGL 74 (251)
Q Consensus 20 eIrVt~k~~i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi~GL 74 (251)
.-.||..+.+...+...+..+.+.+.+.|.|.-.-+.-..|-..|.||-.-|..|
T Consensus 20 tytvtteselqkvlnelmdyikkqgakrvrisitartkkeaekfaailikvfael 74 (106)
T 1qys_A 20 TYTVTTESELQKVLNELMDYIKKQGAKRVRISITARTKKEAEKFAAILIKVFAEL 74 (106)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeeHHHHHHHHHHHHHHHHhcCCcEEEEEEEecchhHHHHHHHHHHHHHHHh
Confidence 4568888899999999999888778999999888888888999999998887643
No 15
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=25.67 E-value=1.2e+02 Score=27.10 Aligned_cols=50 Identities=2% Similarity=-0.045 Sum_probs=37.6
Q ss_pred EEEcCCCchHHHHHHHHHHHh-hcCCCeEEEEEcChhHHHHHHHHHHHHHH
Q 025558 21 IRITTQGRMRNYITYATTLLQ-EKGSNEIVLKAMGRAINKTVMIAELIKRR 70 (251)
Q Consensus 21 IrVt~k~~i~~yV~~Al~LL~-~~g~~eVvIkg~G~AIsKAV~VAEILKrR 70 (251)
++.|.+.--...|..++++|. +...+.|+|.|+|.+-.-|..++-.|.+-
T Consensus 15 ~~~t~~~l~~~~i~~~~~~i~~~~~a~~I~i~G~GtS~~aa~~~~~~l~~~ 65 (347)
T 3fkj_A 15 LYFQGMSVAHENARRIISDILGKQNIERVWFVGCGGSLTGFWPGKYFLDCE 65 (347)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSCCCEEEEEESTHHHHTTHHHHHHHHHH
T ss_pred hhHHHhhcCHHHHHHHHHHHHhhCCCCEEEEEEehHHHHHHHHHHHHHHHH
Confidence 456666667788999999987 55689999999998876665555555543
No 16
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=25.29 E-value=1.2e+02 Score=26.79 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhcCce
Q 025558 29 MRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLH 75 (251)
Q Consensus 29 i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi~GLh 75 (251)
.+..|..++++|.+...+.|+|.|+|.+-.-|..++-.|.+-..++.
T Consensus 9 ~~~~i~~~v~~i~~~~~~~I~i~G~GtS~~aa~~~~~~l~~~~~g~~ 55 (329)
T 3eua_A 9 VNREVQAFLQDLKGKTIDHVFFVACGGSSAIMYPSKYVFDRESKSIN 55 (329)
T ss_dssp SCHHHHHHHHHHTTCCCCEEEEEECTHHHHTTHHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEccHHHHHHHHHHHHHHHhcCCCe
Confidence 45778899999986568999999999887666655555554332443
No 17
>1lxn_A Hypothetical protein MTH1187; hypothetical structure, structural genomics, PSI, protein ST initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.48.1
Probab=22.98 E-value=42 Score=25.33 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=34.5
Q ss_pred CCchHHHHHHHHHHHhhcCCCeEEEEEcChhHHH--HHHHHHHHHHHhcCcee
Q 025558 26 QGRMRNYITYATTLLQEKGSNEIVLKAMGRAINK--TVMIAELIKRRIAGLHQ 76 (251)
Q Consensus 26 k~~i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsK--AV~VAEILKrRi~GLhQ 76 (251)
...+..||..|+++|++.+. ...+++||-.|.= .=.|-++||+-+.-+|+
T Consensus 15 ~~svs~~Va~~i~~i~~sgl-~y~~~pm~T~iEG~e~devm~vv~~~~e~~~~ 66 (99)
T 1lxn_A 15 STSLSSYVAAAVEALKKLNV-RYEISGMGTLLEAEDLDELMEAVKAAHEAVLQ 66 (99)
T ss_dssp SSCCHHHHHHHHHHHTTSSC-EEEEETTEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCC-CeEeCCCeeEEECCCHHHHHHHHHHHHHHHHH
Confidence 35788999999999987565 5588999876652 44455556555433443
No 18
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=20.96 E-value=1.7e+02 Score=22.72 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHH
Q 025558 31 NYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKR 69 (251)
Q Consensus 31 ~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKr 69 (251)
..+..++.+|.+ .+.|+|.|+|..-.-|..++..|.+
T Consensus 27 ~~l~~~~~~i~~--a~~I~i~G~G~S~~~a~~~~~~l~~ 63 (187)
T 3sho_A 27 EAIEAAVEAICR--ADHVIVVGMGFSAAVAVFLGHGLNS 63 (187)
T ss_dssp HHHHHHHHHHHH--CSEEEEECCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCEEEEEecCchHHHHHHHHHHHHh
Confidence 457778888875 6899999999988777777777754
Done!