Query 025559
Match_columns 251
No_of_seqs 175 out of 330
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 12:46:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dyo_A Endo-1,4-beta-xylanase 92.4 3.7 0.00013 33.1 13.9 95 149-249 63-159 (160)
2 1fs1_A SKP2 F-BOX, cyclin A/CD 77.9 0.85 2.9E-05 29.8 1.4 31 22-52 14-44 (53)
3 3l2o_B F-box only protein 4; s 61.2 3 0.0001 38.1 1.6 29 22-50 10-38 (312)
4 2w5f_A Endo-1,4-beta-xylanase 55.4 1.3E+02 0.0046 28.6 12.3 91 148-247 77-170 (540)
5 3b83_A Ten-D3; beta sheet, com 36.3 60 0.0021 22.8 5.0 35 149-186 60-94 (100)
6 2dju_A Receptor-type tyrosine- 34.2 1.1E+02 0.0038 20.8 7.4 14 150-163 67-80 (106)
7 3qwq_B Adnectin; cell surface 27.3 90 0.0031 22.9 4.8 35 149-183 62-102 (114)
8 1uem_A KIAA1568 protein; immun 25.1 1.8E+02 0.006 20.3 6.1 14 149-162 77-90 (117)
9 1x5a_A Ephrin type-A receptor 23.2 93 0.0032 22.2 4.1 33 146-178 64-96 (107)
10 2qbw_A PDZ-fibronectin fusion 22.1 1E+02 0.0035 24.3 4.6 31 149-180 162-193 (195)
11 2ovr_B FBW7, F-BOX/WD repeat p 21.8 36 0.0012 29.9 1.8 29 22-50 24-52 (445)
12 2edd_A Netrin receptor DCC; tu 21.5 2.4E+02 0.0082 20.5 8.8 18 94-111 24-41 (123)
13 3k2m_C Monobody HA4; engineere 21.4 2.1E+02 0.0072 19.9 8.6 32 149-181 65-99 (101)
14 2kbg_A N-CAM 2, neural cell ad 20.7 98 0.0033 23.1 3.9 32 149-183 69-100 (114)
15 2lde_A Sarafotoxin-I3; endothe 20.1 21 0.00072 20.8 -0.1 10 105-114 17-26 (26)
No 1
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A
Probab=92.36 E-value=3.7 Score=33.07 Aligned_cols=95 Identities=15% Similarity=0.238 Sum_probs=57.7
Q ss_pred CcCCCCceEEEEEEEEEeCCCCCceeceEEEEEe--cCCeeeeeEEeeccCCCCCeEEEeeeeEEcCCCCCeEEEEEEEE
Q 025559 149 TKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLL--PNGTKQEHKENLIVKPRNQWIEIPVGEFKSTPENAGEMEISMYE 226 (251)
Q Consensus 149 ~~LSP~T~Y~ay~v~kl~~~~~Gw~~Pv~~~v~~--~~g~~~~~~~~l~~~~~dgW~EielGeF~~~~~~~~eV~fs~~E 226 (251)
..|.||++|.+..-+++.+..- ...+.+.+.. .+|..+...+.-.....++|.+++-|.|...... ..+.|-+ |
T Consensus 63 ~~l~~g~~Y~~Sa~V~~~~g~~--~~~v~~~l~~~~~~g~~~y~~i~~~~~~~~~W~~L~G~~ft~~~~~-~~~~lyv-e 138 (160)
T 1dyo_A 63 RTFVPGNTYCFSVVASFIEGAS--STTFCMKLQYVDGSGTQRYDTIDMKTVGPNQWVHLYNPQYRIPSDA-TDMYVYV-E 138 (160)
T ss_dssp TTSCTTCEEEEEEEEECCSSSS--CEEEEEEEEEECTTSCEEEEEEEEEEECSSCCEEEEEEEEECCTTC-EEEEEEE-E
T ss_pred hhccCCCEEEEEEEEEECCCCC--ceeEEEEEEEEcCCCCEEEEEEeeEEEcCCccEEEECcEEEeCCCC-CEEEEEE-E
Confidence 3688999999999999876431 1234444443 3454332222111235789999987799986432 2333222 3
Q ss_pred EeCCeeeeeEEEEEEEEEecCCC
Q 025559 227 YEGGKWKKGLVVKGVIIRPKNQA 249 (251)
Q Consensus 227 ~~~~~wK~GLiV~GIeIRPk~~~ 249 (251)
+..-..=+.|+.|.|.|....
T Consensus 139 --~~~~~~d~yiDdv~i~~~g~~ 159 (160)
T 1dyo_A 139 --TADDTINFYIDEAIGAVAGTV 159 (160)
T ss_dssp --ESSCCCCEEEEEEEEEETTCC
T ss_pred --CCCCCccEEEEEEEEEeCccc
Confidence 233445589999999987543
No 2
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=77.94 E-value=0.85 Score=29.78 Aligned_cols=31 Identities=10% Similarity=-0.069 Sum_probs=27.1
Q ss_pred chhhhhhhhhcCchhhhhhhhcchhhhhcCc
Q 025559 22 QNESQNFAIAAKPADNTKETKVCEAKEAEVK 52 (251)
Q Consensus 22 ~~~~~~~~~~~~P~d~cr~a~~~~a~~~~~f 52 (251)
......|.++++|.|.|+++.||+.++....
T Consensus 14 ~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 14 DELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp HHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 4567889999999999999999999987644
No 3
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=61.16 E-value=3 Score=38.10 Aligned_cols=29 Identities=7% Similarity=-0.116 Sum_probs=26.1
Q ss_pred chhhhhhhhhcCchhhhhhhhcchhhhhc
Q 025559 22 QNESQNFAIAAKPADNTKETKVCEAKEAE 50 (251)
Q Consensus 22 ~~~~~~~~~~~~P~d~cr~a~~~~a~~~~ 50 (251)
.....+|.++++|.|+|+++.||+..+..
T Consensus 10 ~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 10 IDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 35677899999999999999999999977
No 4
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: XYP; 1.90A {Clostridium thermocellum} PDB: 2wze_A* 2wys_A*
Probab=55.38 E-value=1.3e+02 Score=28.57 Aligned_cols=91 Identities=14% Similarity=0.201 Sum_probs=52.1
Q ss_pred cCcCCCCceEEEEEEEEEeCCCCCceeceEEEEEecCC---eeeeeEEeeccCCCCCeEEEeeeeEEcCCCCCeEEEEEE
Q 025559 148 TTKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLPNG---TKQEHKENLIVKPRNQWIEIPVGEFKSTPENAGEMEISM 224 (251)
Q Consensus 148 t~~LSP~T~Y~ay~v~kl~~~~~Gw~~Pv~~~v~~~~g---~~~~~~~~l~~~~~dgW~EielGeF~~~~~~~~eV~fs~ 224 (251)
+..|.||++|...+-+|... +-..++.+++...++ ........-...+.++|.+++ |.|..... ...+++-+
T Consensus 77 ~~~l~~G~~Y~fSawVk~~g---~~~~~v~l~l~~~d~~~~~~~~~~i~~~~~~~g~Wt~L~-g~ft~p~~-~~~~~lyv 151 (540)
T 2w5f_A 77 GFYLDGGVEYKYSVFVKHNG---TGTETFKLSVSYLDSETEEENKEVIATKDVVAGEWTEIS-AKYKAPKT-AVNITLSI 151 (540)
T ss_dssp TTTCCTTCEEEEEEEEECCS---SSEEEEEEEEEEEETTTCCEEEEEEEEEEEETTCCEEEE-EEEECCTT-EEEEEEEE
T ss_pred cceecCCCEEEEEEEEEeCC---CCCceEEEEEEEecCCCCCceEEEeeEEEEeCCeeEEEE-eEEEecCC-CeEEEEEE
Confidence 34688999999999998522 122355555543222 111111111122478999999 79987542 23444433
Q ss_pred EEEeCCeeeeeEEEEEEEEEecC
Q 025559 225 YEYEGGKWKKGLVVKGVIIRPKN 247 (251)
Q Consensus 225 ~E~~~~~wK~GLiV~GIeIRPk~ 247 (251)
|.. -..-+.|+.|.|.++.
T Consensus 152 -e~~---~~~~f~vDdvsl~~~~ 170 (540)
T 2w5f_A 152 -TTD---STVDFIFDDVTITRKG 170 (540)
T ss_dssp -EES---SCCCEEEEEEEEEEC-
T ss_pred -EcC---CCCCEEEEEEEEecCc
Confidence 332 2456889999887653
No 5
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}
Probab=36.31 E-value=60 Score=22.78 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=24.8
Q ss_pred CcCCCCceEEEEEEEEEeCCCCCceeceEEEEEecCCe
Q 025559 149 TKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLPNGT 186 (251)
Q Consensus 149 ~~LSP~T~Y~ay~v~kl~~~~~Gw~~Pv~~~v~~~~g~ 186 (251)
..|.|+|.|.+.+.-.- ..|+..|+.....+.-|+
T Consensus 60 ~~L~p~t~Y~~~V~A~n---~~g~s~p~~~~~~~~~~~ 94 (100)
T 3b83_A 60 TNLEPNTTYEIRIVARN---GQQYSPPVSTTFTTGSLE 94 (100)
T ss_dssp CSCCTTCEEEEEEEEEE---TTEECCCEEEEEECCCCC
T ss_pred CCCCCCCEEEEEEEEEe---CCCCCCCEEEEEEEEeee
Confidence 46999999998666543 347777888777765554
No 6
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.21 E-value=1.1e+02 Score=20.83 Aligned_cols=14 Identities=29% Similarity=0.304 Sum_probs=10.6
Q ss_pred cCCCCceEEEEEEE
Q 025559 150 KLSPGISYEVLFVI 163 (251)
Q Consensus 150 ~LSP~T~Y~ay~v~ 163 (251)
.|.|+|.|.+.++-
T Consensus 67 ~L~p~t~Y~~~V~A 80 (106)
T 2dju_A 67 GLSPFSEYAFRVLA 80 (106)
T ss_dssp SCCTTCEEEEEEEE
T ss_pred CCCCCcEEEEEEEE
Confidence 48999999865543
No 7
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Probab=27.33 E-value=90 Score=22.86 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=22.9
Q ss_pred CcCCCCceEEEEEEEEEeCC---CCC---ceeceEEEEEec
Q 025559 149 TKLSPGISYEVLFVIMLKDP---AYG---WEVPVSLRLLLP 183 (251)
Q Consensus 149 ~~LSP~T~Y~ay~v~kl~~~---~~G---w~~Pv~~~v~~~ 183 (251)
..|.|+|.|.+.+.-.-... ..+ .+.|+.+++.+.
T Consensus 62 ~gL~P~T~Y~v~V~A~~~~G~~~~~~~T~~~~P~~l~~~T~ 102 (114)
T 3qwq_B 62 SGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTE 102 (114)
T ss_dssp CSCCTTCEEEEEEEEEEEEESSTTSCCEEEEEEEEEEEECC
T ss_pred CCCCCCCEEEEEEEEEECCccEEEEeEcCCCCCceeEEEec
Confidence 46999999998776555443 222 345777777653
No 8
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=25.07 E-value=1.8e+02 Score=20.26 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=10.4
Q ss_pred CcCCCCceEEEEEE
Q 025559 149 TKLSPGISYEVLFV 162 (251)
Q Consensus 149 ~~LSP~T~Y~ay~v 162 (251)
..|.|+|.|...++
T Consensus 77 ~~L~p~t~Y~frV~ 90 (117)
T 1uem_A 77 RGLRPNTIYLFMVR 90 (117)
T ss_dssp CSCCTTCEEEEEEE
T ss_pred CCCCCCCEEEEEEE
Confidence 46999999975444
No 9
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Probab=23.25 E-value=93 Score=22.16 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=19.1
Q ss_pred EecCcCCCCceEEEEEEEEEeCCCCCceeceEE
Q 025559 146 LDTTKLSPGISYEVLFVIMLKDPAYGWEVPVSL 178 (251)
Q Consensus 146 i~t~~LSP~T~Y~ay~v~kl~~~~~Gw~~Pv~~ 178 (251)
+....|.|+|.|.+.++-.-..+.--|..++.+
T Consensus 64 ~~i~~L~p~t~Y~f~V~A~~~~G~g~~S~~~~~ 96 (107)
T 1x5a_A 64 VLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEF 96 (107)
T ss_dssp EEEESCCSSCEEEEEEEEECSSSCCCCCCCEEE
T ss_pred EEECCCCCCCEEEEEEEEECCCccCCCCCCEEE
Confidence 444469999999976665544322123345543
No 10
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=22.11 E-value=1e+02 Score=24.33 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=18.7
Q ss_pred CcCCCCceEEEEEEEEEeCCCCC-ceeceEEEE
Q 025559 149 TKLSPGISYEVLFVIMLKDPAYG-WEVPVSLRL 180 (251)
Q Consensus 149 ~~LSP~T~Y~ay~v~kl~~~~~G-w~~Pv~~~v 180 (251)
.-|.|+|.|.+.+.-.-... +| ...|+.++.
T Consensus 162 ~gL~p~t~Y~~~V~A~~~~G-~g~~S~~v~~~~ 193 (195)
T 2qbw_A 162 SGLKPGVDYTITVYAYSDYY-GSHHYSPISINY 193 (195)
T ss_dssp CSCCTTCEEEEEEEEESSTT-SSCBCCCEEEEE
T ss_pred CCCCCCCEEEEEEEEEeCCc-cCCCCCCEEEEe
Confidence 46999999998665444332 22 234666654
No 11
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=21.84 E-value=36 Score=29.87 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=25.7
Q ss_pred chhhhhhhhhcCchhhhhhhhcchhhhhc
Q 025559 22 QNESQNFAIAAKPADNTKETKVCEAKEAE 50 (251)
Q Consensus 22 ~~~~~~~~~~~~P~d~cr~a~~~~a~~~~ 50 (251)
......|.++++|.|.|+++.||+.++..
T Consensus 24 ~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 24 KELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp HHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 45677899999999999999999998765
No 12
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.45 E-value=2.4e+02 Score=20.50 Aligned_cols=18 Identities=28% Similarity=0.648 Sum_probs=13.3
Q ss_pred CCeEEEEecccceeeecC
Q 025559 94 GCNSFMLFSRALLITWAE 111 (251)
Q Consensus 94 GkkCymLsAR~L~ItWgd 111 (251)
+-+.-.+++..+.+.|.+
T Consensus 24 ~l~~~~~s~tsi~lsW~~ 41 (123)
T 2edd_A 24 GVQAVALTHDAVRVSWAD 41 (123)
T ss_dssp EEEEEEEETTEEEEEEEC
T ss_pred ceEEEEcCCCeEEEEecC
Confidence 335566788999999974
No 13
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A
Probab=21.44 E-value=2.1e+02 Score=19.85 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=21.2
Q ss_pred CcCCCCceEEEEEEEEEeCCCCCc---eeceEEEEE
Q 025559 149 TKLSPGISYEVLFVIMLKDPAYGW---EVPVSLRLL 181 (251)
Q Consensus 149 ~~LSP~T~Y~ay~v~kl~~~~~Gw---~~Pv~~~v~ 181 (251)
..|.|+|.|.+.+.-.-.+ ..|+ ..|+.+...
T Consensus 65 ~~L~p~t~Y~~~V~A~~~~-~~~~~~~s~p~~~~~~ 99 (101)
T 3k2m_C 65 SGLSPGVDYTITVYAWGED-SAGYMFMYSPISINYR 99 (101)
T ss_dssp CSCCTTCEEEEEEEEEEEC-TTSCEEECBCEEEEEE
T ss_pred CCCCCCCEEEEEEEEEeCC-ccceeecCCCEEEEee
Confidence 4699999999877665554 3333 247766553
No 14
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Probab=20.70 E-value=98 Score=23.08 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=22.3
Q ss_pred CcCCCCceEEEEEEEEEeCCCCCceeceEEEEEec
Q 025559 149 TKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLP 183 (251)
Q Consensus 149 ~~LSP~T~Y~ay~v~kl~~~~~Gw~~Pv~~~v~~~ 183 (251)
..|.|+|.|+..++ +.+..|...|..+.+.+.
T Consensus 69 ~~L~p~t~Y~frV~---A~N~~G~s~pS~~~~~T~ 100 (114)
T 2kbg_A 69 EHLQWTMGYEVQIT---AANRLGYSEPTVYEFSMP 100 (114)
T ss_dssp CCCCTTCCEEEEEE---EECTTSCEEEEEEEECCC
T ss_pred cCCCCCCEEEEEEE---EEeCCcCcCCcCCEEEcC
Confidence 35999999986543 445678877777666553
No 15
>2lde_A Sarafotoxin-I3; endothelin-like peptide; NMR {Synthetic}
Probab=20.05 E-value=21 Score=20.81 Aligned_cols=10 Identities=20% Similarity=0.494 Sum_probs=6.3
Q ss_pred ceeeecCCCC
Q 025559 105 LLITWAEDNR 114 (251)
Q Consensus 105 L~ItWgdd~~ 114 (251)
|.|+|.++|+
T Consensus 17 lDiIWvntp~ 26 (26)
T 2lde_A 17 KDVIWVNRNX 26 (26)
T ss_dssp TTCSTTTCC-
T ss_pred ccEEEecCCC
Confidence 5677777763
Done!