Query 025560
Match_columns 251
No_of_seqs 191 out of 890
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 12:48:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025560.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025560hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_V RPL7, 60S ribosomal pro 100.0 3.7E-88 1.3E-92 601.6 20.1 236 12-251 4-239 (239)
2 3iz5_e 60S ribosomal protein L 100.0 1.5E-88 5E-93 606.1 17.1 244 1-251 1-244 (244)
3 3izc_e 60S ribosomal protein R 100.0 2.5E-87 8.5E-92 598.1 17.4 237 11-251 6-244 (244)
4 2zkr_w 60S ribosomal protein L 100.0 6.7E-87 2.3E-91 601.9 5.5 243 5-251 28-270 (270)
5 1vq8_W 50S ribosomal protein L 100.0 5E-63 1.7E-67 415.1 16.5 153 92-251 1-154 (154)
6 3j21_Y 50S ribosomal protein L 100.0 1.4E-61 4.7E-66 406.8 15.2 151 93-251 4-155 (155)
7 3jyw_F 60S ribosomal protein L 100.0 8.4E-63 2.9E-67 433.1 6.9 168 84-251 44-213 (213)
8 1bxy_A Protein (ribosomal prot 99.7 1.3E-16 4.6E-21 113.9 7.8 57 93-149 4-60 (60)
9 2zjr_W 50S ribosomal protein L 99.6 5.9E-16 2E-20 108.8 4.7 55 93-147 1-55 (55)
10 3r8s_Z 50S ribosomal protein L 99.6 1.9E-15 6.6E-20 107.2 7.1 57 91-147 2-58 (58)
11 2ahq_A Sigma-54, RNA polymeras 31.0 33 0.0011 24.7 2.7 45 146-193 14-58 (76)
12 2doa_A RNA polymerase II elong 26.4 17 0.00058 28.0 0.5 16 187-202 45-60 (104)
13 3i5g_C Myosin catalytic light 23.7 65 0.0022 24.9 3.5 46 146-199 100-151 (159)
No 1
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V
Probab=100.00 E-value=3.7e-88 Score=601.60 Aligned_cols=236 Identities=39% Similarity=0.739 Sum_probs=230.8
Q ss_pred cchhHHHHhhhhHHHHHHHHHHHHHhcccCcccccccccchhhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCccCCCCCc
Q 025560 12 FVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLIRMKQRGKRSKKVIGKPKSK 91 (251)
Q Consensus 12 ~vpE~~lkkrk~~~~~~~~~~~~~~~~k~~~~~~~k~~rk~~~krae~~v~ey~~~e~~~~r~kr~ak~~~~~~~~~e~k 91 (251)
+|||++|||||+++++++++++++.+.+ +.++++++.+|+|||+|++||+++++|++|++|+|+++|+||+|+||+
T Consensus 4 ~vpe~~lKkrk~~~~~~~~~~~~~~~~k----~~~~~~r~~~~~rae~y~~ey~~~~r~~ir~~r~a~~~~~~~~~~e~k 79 (239)
T 4a17_V 4 FVPENVQKKLARDEKLRKAKAEQRKASS----AQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTGAFYVPAEAK 79 (239)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCC
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCce
Confidence 5999999999999999999999999888 778889999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEecCChHHHHHHHHHhcccccCCceec
Q 025560 92 LLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIP 171 (251)
Q Consensus 92 l~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~p~~~tvr~Li~KRG~~k~~~~~~~ 171 (251)
|+|||||||+++++|++++||++|||+++|++||+++||+++|||++|+|||+|||||++||++||||||++++|++++|
T Consensus 80 l~fVirIRg~ig~~~~~rktL~~LgL~ki~~~Vfvk~npa~~gMLr~V~pyV~~G~pnlksv~eLi~KRG~~k~~~~~i~ 159 (239)
T 4a17_V 80 VAFAIRIRGVNQLHPDVKRVLRLFRLRQLHNGAFFRVNKASLNMIKRVLPFITFGYPTRNTISKLIYKRGFAKVNGQRIP 159 (239)
T ss_dssp EEEEEECSCSSSCCHHHHHHHHHTTCCBTTEEEEEECCHHHHHTTGGGGGGEEEECCCHHHHHHHHHHSCEEEETTEEEE
T ss_pred EEEEEEecccCCCCHHHHHHHHHcCCCccCCeEEEeCCHHHHHHHHHhhhceeeecCCHHHHHHHHHhhCccccCCceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHhhhcccCCcccHHHHHHHHHhcCCchhhhhcccCccccCCCCCCcCCcccccccCCCCCCChHHHHHHHHhhC
Q 025560 172 LTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 251 (251)
Q Consensus 172 ltdn~lie~~lg~~gi~ciEDlv~eI~~~g~~f~~~~~fl~pFkL~~P~~G~~~~k~~~~~gG~~G~r~~~In~Li~rM~ 251 (251)
||||++||++||++||+|+|||||||+|+|++|+++++|||||+||||+|||++++.||.+||++|||||.||+||++|+
T Consensus 160 Ltdn~~ie~~lGk~giiciEDLiheI~t~g~~fk~~~~fl~pFkL~~PrgG~k~~~~~f~egG~~G~r~~~IN~Li~rM~ 239 (239)
T 4a17_V 160 LTDNTIVEKSLGKFGITCVEDLIHEITTVGPHFKEANNFLWPFKLDTPRGGFRNKRHAYHQGGDWGNREVYINDLVKAML 239 (239)
T ss_dssp CCCSHHHHHHHGGGTCCSHHHHHHHHHHTCSCCHHHHHHBCCEECCCCSSCCSCTTSBGGGTCCBEECTTTHHHHHHHHC
T ss_pred CChhHHHHHhCCcCCcccHHHHHHHHHhCCcCHHHhhccCCCeECCCCccccccCCcccccCCCccccHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999997
No 2
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_e
Probab=100.00 E-value=1.5e-88 Score=606.07 Aligned_cols=244 Identities=47% Similarity=0.809 Sum_probs=236.4
Q ss_pred CcchhccCCCccchhHHHHhhhhHHHHHHHHHHHHHhcccCcccccccccchhhcCcHHHHHHHHHHHHHHHHHHHhhhc
Q 025560 1 MAEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLIRMKQRGKR 80 (251)
Q Consensus 1 ~~~~~~~~~l~~vpE~~lkkrk~~~~~~~~~~~~~~~~k~~~~~~~k~~rk~~~krae~~v~ey~~~e~~~~r~kr~ak~ 80 (251)
||++.. .+.|||++|||||+++++++++++++.+++ +.++++++.+|+|||+|+++|+++++|++|++|+|++
T Consensus 1 m~~~~~---~~~vpE~llkkrk~~~~~~~~~~~~~~~~k----~~~k~~r~~~~~rae~~~~ey~~~~r~~ir~~r~a~~ 73 (244)
T 3iz5_e 1 MASEAA---KVAVPEKVILKRRREEVWAAEKKQKVAAEK----IKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARM 73 (244)
T ss_dssp CHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHSCS
T ss_pred CCCccc---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666543 357999999999999999999999999888 7778889999999999999999999999999999999
Q ss_pred CCCccCCCCCceEEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEecCChHHHHHHHHHh
Q 025560 81 SKKVIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKK 160 (251)
Q Consensus 81 ~~~~~~~~e~kl~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~p~~~tvr~Li~KR 160 (251)
+|+||+|+||+|+|||||||+++++|++++||++|||+++|++||+++||+++|||++|+|||+|||||++||++|||||
T Consensus 74 ~~~~~~p~e~kl~fVirIRg~ig~~~~~rktL~~LgL~ki~~~Vfv~~npa~~gML~~V~pyV~~G~pnlksv~eLi~KR 153 (244)
T 3iz5_e 74 KGGFYVSPEAKPLFVVRIRGINAMHPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVRELIYKR 153 (244)
T ss_dssp CCCSCCCCCCCCEEEECCSCSTTSCHHHHHHHHHTCCCSTTEEEEECSCHHHHHHHTTTGGGCEEECCCHHHHHHHHHHH
T ss_pred cCCCCCCCCCceEEEEEecCcCCCCHHHHHHHHHcCCCccCCEEEEeCCHHHHHHHHHhhcceeeecCCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCceecCCChhhHhhhcccCCcccHHHHHHHHHhcCCchhhhhcccCccccCCCCCCcCCcccccccCCCCCCCh
Q 025560 161 GYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNRE 240 (251)
Q Consensus 161 G~~k~~~~~~~ltdn~lie~~lg~~gi~ciEDlv~eI~~~g~~f~~~~~fl~pFkL~~P~~G~~~~k~~~~~gG~~G~r~ 240 (251)
|+++++++++|||||++||++||++||+|+|||||||+++|++|+++++|||||+||||+|||+++++||.+||++||||
T Consensus 154 G~~k~~~~~i~ltdn~~iee~lgk~giiciEDLiheI~~~g~~fk~~~~fl~PFkL~~Pr~G~k~~~~~~~egG~~G~r~ 233 (244)
T 3iz5_e 154 GYGKLNKQRIPLANNKVIEEGLGKHNIICIEDLVHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRE 233 (244)
T ss_dssp CCCCTTSCCCCSSTHHHHTCSCCSSSCCCHHHHHHHHHHTCTTCSSSCCCSSCEECCCCTTCCSCTTSBTTTTCSBEECH
T ss_pred CeeccCCceecCChHHHHHHhccccCcccHHHHHHHHHhCccCHHHhhcccCCeeCCCCccccccCccccccCCCccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhC
Q 025560 241 EEINELISKMN 251 (251)
Q Consensus 241 ~~In~Li~rM~ 251 (251)
+.||+||++||
T Consensus 234 ~~IN~Li~rM~ 244 (244)
T 3iz5_e 234 NYINQLVRRMN 244 (244)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHhC
Confidence 99999999997
No 3
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F 4b6a_F
Probab=100.00 E-value=2.5e-87 Score=598.12 Aligned_cols=237 Identities=41% Similarity=0.727 Sum_probs=231.6
Q ss_pred ccchhHHHHhhhhHHHHHHHHHHHHHhcccCcccccccccchhhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCccCCCCC
Q 025560 11 AFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLIRMKQRGKRSKKVIGKPKS 90 (251)
Q Consensus 11 ~~vpE~~lkkrk~~~~~~~~~~~~~~~~k~~~~~~~k~~rk~~~krae~~v~ey~~~e~~~~r~kr~ak~~~~~~~~~e~ 90 (251)
..|||++|||||+++++++++++++.+++ +.++++++.+|+|||+|+++|+++++|++|++|+|+++|+||+|+||
T Consensus 6 ~~vpE~llkkrk~~~~~~~~~~~~~~~~k----~~~k~~r~~~~~rae~~~~ey~~~~r~~ir~~r~a~~~~~~~~p~e~ 81 (244)
T 3izc_e 6 ILTPESQLKKSKAQQKTAEQVAAERAARK----AANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQH 81 (244)
T ss_dssp CHHHHTTSTTHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHSSCCCCSCCCCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC
Confidence 36999999999999999999999999888 77788889999999999999999999999999999999999999999
Q ss_pred ceEEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEecCChHHHHHHHHHhcccccCCcee
Q 025560 91 KLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRI 170 (251)
Q Consensus 91 kl~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~p~~~tvr~Li~KRG~~k~~~~~~ 170 (251)
+|+|||||||+++++|++++||++|||+++|++||+++||+++|||++|+|||+|||||++||++||||||+++++++++
T Consensus 82 kl~fVirIRs~ig~~~~~rktL~~LgL~ki~~~Vfv~~npa~~gMLr~V~pyVt~G~pnlksv~eLi~KRG~~k~~~~~i 161 (244)
T 3izc_e 82 KLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRV 161 (244)
T ss_dssp CCEEEECCSCSSSCCHHHHHHHHHHTCCSTTEEEEECSCHHHHHHHHHHTTSCEEECCCHHHHHHHHHHHCCCCSSSCCC
T ss_pred ceEEEEEecCcCCCCHHHHHHHHHcCCCccCCeEEEeCCHHHHHHHHHHhhHhhcccCCHHHHHHHHHhhCccccCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhHhhhcccCCcccHHHHHHHHHhcCCchhhhhcccCccccCCCCCCcC--CcccccccCCCCCCChHHHHHHHH
Q 025560 171 PLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLL--GKKQPFKDGGEAGNREEEINELIS 248 (251)
Q Consensus 171 ~ltdn~lie~~lg~~gi~ciEDlv~eI~~~g~~f~~~~~fl~pFkL~~P~~G~~--~~k~~~~~gG~~G~r~~~In~Li~ 248 (251)
|||||++||++||++||+|+|||||||+++|++|+++++|||||+||||+|||+ +++.||.+||++||||+.||+||+
T Consensus 162 ~ltdn~~iee~lgk~giiciEDLiheI~~~g~~fk~~~~fl~pFkL~~PrgG~~~~~~~~~~~egG~~G~r~~~IN~Li~ 241 (244)
T 3izc_e 162 PLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLVK 241 (244)
T ss_dssp CSCHHHHHTCCCCSSSCCSHHHHHHHHHHTCTTSTTTSSCSSCEECCCCGGGSSCSCTTCBTTTTSSBEECHHHHHHHHH
T ss_pred cCCchHHHHHhccccCceeHHHHHHHHHhCCcCHHHhhccCCCeECCCCccccccCCcccccccCCCccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 688999999999999999999999
Q ss_pred hhC
Q 025560 249 KMN 251 (251)
Q Consensus 249 rM~ 251 (251)
+||
T Consensus 242 rM~ 244 (244)
T 3izc_e 242 SMN 244 (244)
T ss_dssp HCC
T ss_pred HhC
Confidence 997
No 4
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=6.7e-87 Score=601.87 Aligned_cols=243 Identities=40% Similarity=0.722 Sum_probs=156.8
Q ss_pred hccCCCccchhHHHHhhhhHHHHHHHHHHHHHhcccCcccccccccchhhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 025560 5 AAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQFRDQELDLIRMKQRGKRSKKV 84 (251)
Q Consensus 5 ~~~~~l~~vpE~~lkkrk~~~~~~~~~~~~~~~~k~~~~~~~k~~rk~~~krae~~v~ey~~~e~~~~r~kr~ak~~~~~ 84 (251)
.+++++|.|||++|||||+++++++++++++.+.+ ++++++++.+|+|||+|+++|+++++|.+|++|+|+++|+|
T Consensus 28 ~~~~~~~~vpE~llKkrk~~~~~~~~~~~~~~~~k----~~~~~~r~~~~~rae~y~~eyr~~~r~~ir~~r~akk~g~~ 103 (270)
T 2zkr_w 28 TLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALK----TLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNF 103 (270)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 45567889999999999999999999998888877 77888899999999999999999999999999999999999
Q ss_pred cCCCCCceEEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEecCChHHHHHHHHHhcccc
Q 025560 85 IGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYAT 164 (251)
Q Consensus 85 ~~~~e~kl~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~p~~~tvr~Li~KRG~~k 164 (251)
|+|+||+++||+||||++|++|++++||++|||+++|++||+++||+++|||++|+|||+|||||++||++||||||+++
T Consensus 104 yvp~e~kl~~V~rirs~ig~~~~~rktL~~LgLrki~~~V~v~dtpa~rgML~kV~~~V~vgepnlksv~eLi~KRG~~k 183 (270)
T 2zkr_w 104 YVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGK 183 (270)
T ss_dssp -------CEEEECCSCSSSSCTTSSSHHHHTCCCSSSEEEEECCCHHHHHTTTSSTTSCBCCCCCTTTHHHHHHHCCCCS
T ss_pred cccCCCceeEEEEeCCcCCCCHHHHHHHHHcCCCcCCCeEEEeCCHHHHHHHHhcccceeEecCCHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceecCCChhhHhhhcccCCcccHHHHHHHHHhcCCchhhhhcccCccccCCCCCCcCCcccccccCCCCCCChHHHH
Q 025560 165 VDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEIN 244 (251)
Q Consensus 165 ~~~~~~~ltdn~lie~~lg~~gi~ciEDlv~eI~~~g~~f~~~~~fl~pFkL~~P~~G~~~~k~~~~~gG~~G~r~~~In 244 (251)
+|+++||||||+|||++||++||+|+||||||||++|+||+++++|||||+||||+|||+++++||++||++||||++||
T Consensus 184 i~~k~i~LtdN~iIee~LG~~giiciEDliheI~t~g~~fk~~~~fl~pFkL~~P~~G~k~k~~~~~egG~~G~r~~~IN 263 (270)
T 2zkr_w 184 INKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQIN 263 (270)
T ss_dssp SSSSCSCSSHHHHSSSSSCSSCCCSHHHHHHHTSSCSSCCSSSSSCCSCEECCCCSSCCSCSSCC-CCSCSCC-CCTTTT
T ss_pred cCCeeeeCCchHHHHhhccCcCcchHHHHHHHHHhccccHHHHhCcCCCeeCCCccccccccccccccCCcccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHhhC
Q 025560 245 ELISKMN 251 (251)
Q Consensus 245 ~Li~rM~ 251 (251)
+||++|+
T Consensus 264 ~Li~rM~ 270 (270)
T 2zkr_w 264 RLIRRMN 270 (270)
T ss_dssp TTTTTCC
T ss_pred HHHHHhC
Confidence 9999997
No 5
>1vq8_W 50S ribosomal protein L30P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.59.1.1 PDB: 1jj2_V 1k73_X* 1k8a_X* 1k9m_X* 1kc8_X* 1kd1_X* 1kqs_V* 1m1k_X* 1m90_X* 1n8r_X* 1nji_X* 1q7y_X* 1q81_X* 1q82_X* 1q86_X* 1qvf_V 1qvg_V 1s72_W* 1vq4_W* 1vq5_W* ...
Probab=100.00 E-value=5e-63 Score=415.08 Aligned_cols=153 Identities=22% Similarity=0.404 Sum_probs=149.9
Q ss_pred eEEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEecCChHHHHHHHHHhcccccCCceec
Q 025560 92 LLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIP 171 (251)
Q Consensus 92 l~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~p~~~tvr~Li~KRG~~k~~~~~~~ 171 (251)
|+||+||||.++++|++++||++|||+++|++||+++||+++|||++|+|||+||+||++||++||||||++++|+ +|
T Consensus 1 l~fV~rirs~ig~~~~~r~tL~~LgL~ki~~~v~~~~tp~~~gMl~kV~~~V~vge~~l~sv~~Li~KRG~~~~~~--~~ 78 (154)
T 1vq8_W 1 MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGD--AD 78 (154)
T ss_dssp CEEEEECSCSTTSCHHHHHHHHHTTCCSTTEEEEECCCHHHHHHHHHSGGGEEEECCCHHHHHHHHHHHCCBSSSC--CC
T ss_pred CEEEEEeCCcCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHhhCceEEEecCchhhHHHHHHhhCccccCC--cc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999998988 89
Q ss_pred CCChhhHhhhcccCCcccHHHHHHHHHhcCCchhhhhcccCccccCCCCCCcCCcccccccCCCCCCCh-HHHHHHHHhh
Q 025560 172 LTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLLGKKQPFKDGGEAGNRE-EEINELISKM 250 (251)
Q Consensus 172 ltdn~lie~~lg~~gi~ciEDlv~eI~~~g~~f~~~~~fl~pFkL~~P~~G~~~~k~~~~~gG~~G~r~-~~In~Li~rM 250 (251)
||||++|| ++||+|+|||||||+++|++|+++ +|||||+||||++||++++++|++||++|||| ++||+||++|
T Consensus 79 ltdn~iie----~~gi~ciedlihei~~~g~~f~~~-~fl~pF~L~~P~~G~~~~~~~~~egG~~G~r~~~~In~Li~rM 153 (154)
T 1vq8_W 79 VDDEWVAE----HTDYDDISGLAFALLSEETTLREQ-GLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAM 153 (154)
T ss_dssp CSHHHHHH----HSSSSSHHHHHHHHHTTSCCTGGG-TBCSCEECCCCTTCCSCSSSBGGGTCSBEECCHHHHHHHHHHT
T ss_pred CCchhhcc----ccccccHHHHHHHHHhCCcchhhc-CCcCceecCCccccccccccccccCCccccccHHHHHHHHHHh
Confidence 99999998 579999999999999999999999 99999999999999999999999999999999 9999999999
Q ss_pred C
Q 025560 251 N 251 (251)
Q Consensus 251 ~ 251 (251)
+
T Consensus 154 ~ 154 (154)
T 1vq8_W 154 R 154 (154)
T ss_dssp C
T ss_pred C
Confidence 7
No 6
>3j21_Y 50S ribosomal protein L30P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.4e-61 Score=406.83 Aligned_cols=151 Identities=37% Similarity=0.576 Sum_probs=145.1
Q ss_pred EEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEecCChHHHHHHHHHhcccccCCceecC
Q 025560 93 LFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYATVDRQRIPL 172 (251)
Q Consensus 93 ~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~p~~~tvr~Li~KRG~~k~~~~~~~l 172 (251)
++|+||||+++++|++++||++|||+++|++||+++||+++|||++|+|||+|||||++||++||||||++ +++ +||
T Consensus 4 ~~V~~irs~ig~~~~~r~tL~~LgL~ki~~~v~~~~tp~~~gMl~kV~~lV~vgep~~ksv~eLi~KRG~~--~~~-~~l 80 (155)
T 3j21_Y 4 LAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETLAKLIRKRGRL--IGN-KPV 80 (155)
T ss_dssp EEEEECSCSTTCCHHHHHHHHHTTCCSTTEEEEEECCHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHCCS--SSS-CCC
T ss_pred EEEEEeCCCCCCCHHHHHHHHHcCCCcCCCEEEEcCCHHHHHHHHhhhcceEEEcCCHHHHHHHHHHhccc--cCC-CcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999993 333 599
Q ss_pred CChhhHhhhcccCCcccHHHHHHHHHhcCCchhhhhcccCccccCCCCCCcC-CcccccccCCCCCCChHHHHHHHHhhC
Q 025560 173 TDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLL-GKKQPFKDGGEAGNREEEINELISKMN 251 (251)
Q Consensus 173 tdn~lie~~lg~~gi~ciEDlv~eI~~~g~~f~~~~~fl~pFkL~~P~~G~~-~~k~~~~~gG~~G~r~~~In~Li~rM~ 251 (251)
|||+|+| ++|| |+||||||||++|++|+++++|||||+||||+|||+ ++++||.+||++||||++||+||++|+
T Consensus 81 tdn~l~e----k~gi-ciEdli~eI~~~g~~fk~~~~fl~pFkL~~P~~G~k~~~~~~~~egG~~G~r~~~In~Li~rM~ 155 (155)
T 3j21_Y 81 TDEYVKE----KLGM-TIEEFAQKVVNGEMSLKDLPNLKPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINELIERML 155 (155)
T ss_dssp CHHHHHH----HSSS-CHHHHHHHHHHTSSCTTTSCSSCSEEECCCCTTCSSSCSSSBTTTTSSBEECCTTHHHHHHHTC
T ss_pred CHHHHHH----HhCC-CHHHHHHHHHhCCcCHHHhhCcCCceecCCccchhhcccccccccCCCCcCcHHHHHHHHHHcC
Confidence 9999998 5799 999999999999999999999999999999999998 588999999999999999999999996
No 7
>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F
Probab=100.00 E-value=8.4e-63 Score=433.09 Aligned_cols=168 Identities=48% Similarity=0.896 Sum_probs=164.7
Q ss_pred ccCCCCCceEEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEecCChHHHHHHHHHhccc
Q 025560 84 VIGKPKSKLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPNLVNVKELIYKKGYA 163 (251)
Q Consensus 84 ~~~~~e~kl~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~p~~~tvr~Li~KRG~~ 163 (251)
-.+|.+++++||+|++|+++++|+++++|++|+|+++|++||+++|+++.+||++|+|||+|||||++||++||||||++
T Consensus 44 ~Svp~e~kL~fVIRIrGin~ispk~rkvLqLLRL~rInsgvfvk~~k~t~~mL~~VepyV~~G~p~l~tv~eLi~KRg~~ 123 (213)
T 3jyw_F 44 AAAAAAAGLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFG 123 (213)
T ss_dssp HTCSCCCCCCCCCCCSCSSCCCHHHHHHHGGGCCCSSSCBCCCCCSSTTTTHHHHTTTTSCEECCCSSTTTSHHHHSCCC
T ss_pred hhCcccCccceeeeecCccCCCCchHHHHHHcccceecceEEecCCHHHHHHHhhccchheeecCCHHHHHHHHHhcCcc
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceecCCChhhHhhhcccCCcccHHHHHHHHHhcCCchhhhhcccCccccCCCCCCcC--CcccccccCCCCCCChH
Q 025560 164 TVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVVNFLGPLTLNKPEGGLL--GKKQPFKDGGEAGNREE 241 (251)
Q Consensus 164 k~~~~~~~ltdn~lie~~lg~~gi~ciEDlv~eI~~~g~~f~~~~~fl~pFkL~~P~~G~~--~~k~~~~~gG~~G~r~~ 241 (251)
+++++++|||||++||++||++||+|+|||+|||+++|++|+++++|||||+||||+|||+ ++++||++||++|||||
T Consensus 124 k~~~~~i~ltdn~iie~~lg~~gi~ciedli~ei~~~g~~f~~~~~fl~pF~L~~P~~G~~~~~~~~~~~egG~~G~r~~ 203 (213)
T 3jyw_F 124 KINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREE 203 (213)
T ss_dssp SSSCCSSCSSSHHHHSSSSCCSCCCCHHHHHHHHTTTCSSCTTTTTSCSSBCCCCCTTCCSSSSSSCCTTTSCSSSEESS
T ss_pred cCCCCeecCCcchHHHHhccCCCceeHHHHHHHHHhCCcCHHHhhCCCCCEECCCCCCCccCCCeecccccCCCCCCcHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 78899999999999999
Q ss_pred HHHHHHHhhC
Q 025560 242 EINELISKMN 251 (251)
Q Consensus 242 ~In~Li~rM~ 251 (251)
.||+||++||
T Consensus 204 ~In~Li~~m~ 213 (213)
T 3jyw_F 204 FINKLVKSMN 213 (213)
T ss_dssp THHHHHTTCC
T ss_pred HHHHHHHHhC
Confidence 9999999997
No 8
>1bxy_A Protein (ribosomal protein L30); X-RAY crystallography, conformational changes, ribosome; 1.90A {Thermus thermophilus} SCOP: d.59.1.1 PDB: 1giy_X 1ml5_x* 1vsa_X 1vsp_X 1yl3_X 2b66_3 2b9n_3 2b9p_3 2hgj_2 2hgq_2 2hgu_2 2j01_3 2j03_3 2jl6_3 2jl8_3 2v47_3 2v49_3 2wdi_3 2wdj_3 2wdl_3 ...
Probab=99.67 E-value=1.3e-16 Score=113.88 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=55.7
Q ss_pred EEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEecCC
Q 025560 93 LFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGYPN 149 (251)
Q Consensus 93 ~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~p~ 149 (251)
+.|+++||.+|.++++++||++|||+++|++|++++||+++|||++|+|||+|++++
T Consensus 4 ~kItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGMI~kV~hlV~veev~ 60 (60)
T 1bxy_A 4 LKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEVVE 60 (60)
T ss_dssp EEEEECSCCTTCCHHHHHHHHHHTCCSTTCEEEEECCHHHHHHHHHTTTTEEEEEEC
T ss_pred EEEEEeecCCCCCHHHHHHHHHhCCCCCCCEEEecCCHHHHhHHHHhHheEEEEecC
Confidence 789999999999999999999999999999999999999999999999999999975
No 9
>2zjr_W 50S ribosomal protein L30; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.59.1.1 PDB: 1nwx_X* 1nwy_X* 1pnu_X 1pny_X 1sm1_X* 1vor_Z 1vou_Z 1vow_Z 1voy_Z 1vp0_Z 1xbp_X* 2zjp_W* 2zjq_W 1nkw_X 3cf5_W* 3dll_W* 3pio_W* 3pip_W*
Probab=99.60 E-value=5.9e-16 Score=108.75 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=53.0
Q ss_pred EEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEec
Q 025560 93 LFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGY 147 (251)
Q Consensus 93 ~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~ 147 (251)
+.|+++||.+|.++++++||++|||+++|++|+++|||+++|||++|+|||+|++
T Consensus 1 ~kIt~vrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGMI~kV~hlV~vee 55 (55)
T 2zjr_W 1 MKIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE 55 (55)
T ss_dssp CEEEBCSCSTTSCHHHHHHHHHTTCCSTTCEEECCCSHHHHHHHHHTGGGBCCCC
T ss_pred CEEEEEecCCCCCHHHHHHHHHhCCCCCCCEEEecCCHHHHHHHHHhHhhEEEeC
Confidence 3589999999999999999999999999999999999999999999999999985
No 10
>3r8s_Z 50S ribosomal protein L30; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_X 1p86_X 2awb_Y 2aw4_Y 2i2v_Z 2j28_Y 2i2t_Z* 2qao_Y* 2qba_Y* 2qbc_Y* 2qbe_Y 2qbg_Y 2qbi_Y* 2qbk_Y* 2qov_Y 2qox_Y 2qoz_Y* 2qp1_Y* 2rdo_Y 2vhm_Y ...
Probab=99.59 E-value=1.9e-15 Score=107.18 Aligned_cols=57 Identities=23% Similarity=0.163 Sum_probs=54.7
Q ss_pred ceEEEEeecCCCCCChHHHHHHHHhCCCCcCcEEEEeCChhHHHHHHhccCeEEEec
Q 025560 91 KLLFIIRIQGTSDMHRRTKKILYNLRLRRIFSGVFVRATDGMLEVLQKVEPYVTYGY 147 (251)
Q Consensus 91 kl~~ViRirg~~~~~p~~~k~L~~LrL~ki~~~vfv~~n~~~~~mL~~V~pyV~~G~ 147 (251)
+-+.|+++||.+|.++++++||++|||+++|++|++++||+++|||++|+|||+|.+
T Consensus 2 ~~lkItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGMI~kV~hLV~vee 58 (58)
T 3r8s_Z 2 KTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE 58 (58)
T ss_dssp CEEEEEECSCSTTCCHHHHHHHHHHTCCSTTCCCEEECCHHHHHHHHHTGGGEEEEC
T ss_pred CeEEEEEeecCCCCCHHHHHHHHHcCCCCCCCEEEecCCHHHHHHHHHHHheEEEeC
Confidence 358899999999999999999999999999999999999999999999999999975
No 11
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=31.03 E-value=33 Score=24.73 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=29.9
Q ss_pred ecCChHHHHHHHHHhcccccCCceecCCChhhHhhhcccCCcccHHHH
Q 025560 146 GYPNLVNVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDI 193 (251)
Q Consensus 146 G~p~~~tvr~Li~KRG~~k~~~~~~~ltdn~lie~~lg~~gi~ciEDl 193 (251)
|..|..+|+.+|..= +...+...||||..|. +.|.+.||.+---=
T Consensus 14 ~~~S~~~Ik~~Ik~l--I~~Ed~~kPlSD~~I~-~~L~~~Gi~IaRRT 58 (76)
T 2ahq_A 14 EGLTQGELMKLIKEI--VENEDKRKPYSDQEIA-NILKEKGFKVARRT 58 (76)
T ss_dssp CSCCHHHHHHHHHHH--GGGCCSSSCCCHHHHH-HHHTTTSSCCCHHH
T ss_pred ccccHHHHHHHHHHH--HHhcCCCCCCCHHHHH-HHHHHcCCCccHHH
Confidence 356778888877542 2233445799999995 56777788765443
No 12
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=26.43 E-value=17 Score=28.00 Aligned_cols=16 Identities=13% Similarity=0.403 Sum_probs=11.4
Q ss_pred cccHHHHHHHHHhcCC
Q 025560 187 IICIEDIVHEIANVGP 202 (251)
Q Consensus 187 i~ciEDlv~eI~~~g~ 202 (251)
..|+..+.+++.+..+
T Consensus 45 ~~~l~~iL~eVA~~~~ 60 (104)
T 2doa_A 45 KDALDGLLQQVANMSA 60 (104)
T ss_dssp HHHHHHHHHHSSEECS
T ss_pred HHHHHHHHHHHHhcCC
Confidence 3478888888877653
No 13
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=23.75 E-value=65 Score=24.89 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=23.8
Q ss_pred ecCChHHHHHHHHHhcccccCCceecCCChhh---Hhhhc---ccCCcccHHHHHHHHHh
Q 025560 146 GYPNLVNVKELIYKKGYATVDRQRIPLTDNNI---IEQTL---GKYGIICIEDIVHEIAN 199 (251)
Q Consensus 146 G~p~~~tvr~Li~KRG~~k~~~~~~~ltdn~l---ie~~l---g~~gi~ciEDlv~eI~~ 199 (251)
|+++.+-++.++..-|. ++|+..+ +...- ..-|-|+.+++++.+.+
T Consensus 100 G~I~~~el~~~l~~~g~--------~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m~~ 151 (159)
T 3i5g_C 100 GLISSAEIRNVLKMLGE--------RITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMA 151 (159)
T ss_dssp SEECHHHHHHHHHHSSS--------CCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHhCC--------CCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHHHC
Confidence 55666666666654432 4555443 22111 12366777777776654
Done!