Your job contains 1 sequence.
>025562
MALTVSRRLLRRFGSFSAFGRYESPSLTSRSIRSPPDLYVACSGDNLFPLKSGLSFLASR
KFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDV
FDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQF
RGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVSLSVSLSLFLRPSFSLSLKN
TDTHVHIVSSI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025562
(251 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2061659 - symbol:AT2G20060 species:3702 "Arabi... 782 1.0e-77 1
TIGR_CMR|APH_0281 - symbol:APH_0281 "ribosomal protein L4... 341 5.4e-31 1
TIGR_CMR|NSE_0267 - symbol:NSE_0267 "ribosomal protein L4... 309 1.3e-27 1
TIGR_CMR|ECH_0410 - symbol:ECH_0410 "ribosomal protein L4... 306 2.8e-27 1
DICTYBASE|DDB_G0283275 - symbol:DDB_G0283275 "ribosomal p... 290 1.4e-25 1
TIGR_CMR|BA_0111 - symbol:BA_0111 "ribosomal protein L4" ... 287 2.9e-25 1
UNIPROTKB|Q3A9R7 - symbol:rplD "50S ribosomal protein L4"... 284 5.9e-25 1
TIGR_CMR|CHY_2308 - symbol:CHY_2308 "ribosomal protein L4... 284 5.9e-25 1
UNIPROTKB|P60729 - symbol:rplD "50S ribosomal protein L4"... 283 7.6e-25 1
UNIPROTKB|K7ELQ0 - symbol:MRPL4 "39S ribosomal protein L4... 275 5.3e-24 1
UNIPROTKB|K7ES61 - symbol:MRPL4 "39S ribosomal protein L4... 272 1.1e-23 1
UNIPROTKB|Q9BYD3 - symbol:MRPL4 "39S ribosomal protein L4... 272 1.1e-23 1
MGI|MGI:2137210 - symbol:Mrpl4 "mitochondrial ribosomal p... 266 4.8e-23 1
TIGR_CMR|SPO_3824 - symbol:SPO_3824 "ribosomal protein L4... 264 7.8e-23 1
ZFIN|ZDB-GENE-050522-388 - symbol:zgmrpl4 "mitochondrial ... 264 7.8e-23 1
RGD|1311777 - symbol:Mrpl4 "mitochondrial ribosomal prote... 258 3.4e-22 1
UNIPROTKB|Q32PI6 - symbol:MRPL4 "39S ribosomal protein L4... 253 1.1e-21 1
UNIPROTKB|F1PB94 - symbol:MRPL4 "Uncharacterized protein"... 244 1.0e-20 1
UNIPROTKB|F1S3J8 - symbol:MRPL4 "Uncharacterized protein"... 243 1.3e-20 1
TIGR_CMR|GSU_2856 - symbol:GSU_2856 "ribosomal protein L4... 240 2.7e-20 1
FB|FBgn0001995 - symbol:mRpL4 "mitochondrial ribosomal pr... 222 2.2e-18 1
TIGR_CMR|DET_0475 - symbol:DET_0475 "ribosomal protein L4... 221 2.8e-18 1
TIGR_CMR|CBU_0239 - symbol:CBU_0239 "ribosomal protein L4... 215 1.2e-17 1
TIGR_CMR|SO_0232 - symbol:SO_0232 "ribosomal protein L4" ... 214 1.6e-17 1
UNIPROTKB|Q9KNY5 - symbol:rplD "50S ribosomal protein L4"... 213 2.0e-17 1
TIGR_CMR|VC_2595 - symbol:VC_2595 "ribosomal protein L4" ... 213 2.0e-17 1
POMBASE|SPBC2D10.08c - symbol:SPBC2D10.08c "mitochondrial... 213 2.0e-17 1
UNIPROTKB|P60723 - symbol:rplD species:83333 "Escherichia... 211 3.2e-17 1
UNIPROTKB|K7EJ73 - symbol:MRPL4 "39S ribosomal protein L4... 211 3.2e-17 1
TIGR_CMR|CPS_0872 - symbol:CPS_0872 "ribosomal protein L4... 208 6.7e-17 1
UNIPROTKB|K7ELF1 - symbol:MRPL4 "39S ribosomal protein L4... 204 1.8e-16 1
TAIR|locus:2025107 - symbol:RPL4 "ribosomal protein L4" s... 198 7.7e-16 1
ASPGD|ASPL0000008992 - symbol:AN6843 species:162425 "Emer... 194 2.0e-15 1
TIGR_CMR|CJE_1874 - symbol:CJE_1874 "ribosomal protein L4... 175 2.1e-13 1
WB|WBGene00020717 - symbol:mrpl-4 species:6239 "Caenorhab... 177 2.3e-13 1
SGD|S000004487 - symbol:YML6 "Mitochondrial ribosomal pro... 116 9.8e-05 1
>TAIR|locus:2061659 [details] [associations]
symbol:AT2G20060 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 EMBL:CP002685
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AC006081 KO:K02926
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 HAMAP:MF_01328_B OMA:PWNQKGT
EMBL:AY072419 EMBL:BT002156 IPI:IPI00545678 PIR:E84584
RefSeq:NP_565463.1 UniGene:At.39751 HSSP:P38516
ProteinModelPortal:Q8VY61 SMR:Q8VY61 IntAct:Q8VY61 STRING:Q8VY61
PRIDE:Q8VY61 EnsemblPlants:AT2G20060.1 GeneID:816525
KEGG:ath:AT2G20060 TAIR:At2g20060 InParanoid:Q8VY61
PhylomeDB:Q8VY61 ProtClustDB:CLSN2688266 ArrayExpress:Q8VY61
Genevestigator:Q8VY61 Uniprot:Q8VY61
Length = 300
Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
Identities = 160/219 (73%), Positives = 180/219 (82%)
Query: 1 MALTVSXXXXXXFGSFSAFGRYESPSLTSRSIRSPPDLYVACSGDNLFPLKSGLSFLASR 60
MA ++S FGSFSA GR SP+L++ + S L + + D LK G++ L++R
Sbjct: 1 MAASISRRIFRTFGSFSALGRSSSPNLSANT--SGNGL-ASLTND----LKYGMALLSNR 53
Query: 61 KFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDV 120
K ST+ILTPD S FPSDLL KKTVLTPD TIG +QDLVIPVTNF NE+KGFMVLAGDV
Sbjct: 54 KLSTSILTPDDS---FPSDLLTKKTVLTPDRTIGQYQDLVIPVTNFQNEEKGFMVLAGDV 110
Query: 121 FDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQF 180
FDVPIRKDIIH VVRWQLAKRQQGTHSTKT+SEVSGTG+KPW QKGTGRARHGTLRGPQF
Sbjct: 111 FDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRKPWNQKGTGRARHGTLRGPQF 170
Query: 181 RGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
RGG MHGPKPRSHAIK+NK+VRRLGLKIAL+ARAAEGK
Sbjct: 171 RGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGK 209
>TIGR_CMR|APH_0281 [details] [associations]
symbol:APH_0281 "ribosomal protein L4" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0019843
eggNOG:COG0088 HOGENOM:HOG000248767 KO:K02926 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 RefSeq:YP_504893.1 ProteinModelPortal:Q2GL58
STRING:Q2GL58 GeneID:3931236 KEGG:aph:APH_0281 PATRIC:20949136
OMA:GKAHGPV ProtClustDB:PRK05319 BioCyc:APHA212042:GHPM-311-MONOMER
HAMAP:MF_01328_B Uniprot:Q2GL58
Length = 208
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 67/119 (56%), Positives = 82/119 (68%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N NE G + L VF + R+D++ VV WQLAKR+ GTH K IS++SGT K
Sbjct: 3 VNIVNIANEVVGSIDLNPQVFGLEPRRDVLKEVVNWQLAKRRAGTHKAKGISDISGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
P+RQK TGRAR G+LR PQFRGG + GP PRSH LNKKVRRLGLK+ALS + A K
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVIFGPVPRSHEYSLNKKVRRLGLKVALSMKVAANK 121
>TIGR_CMR|NSE_0267 [details] [associations]
symbol:NSE_0267 "ribosomal protein L4" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0042255 "ribosome assembly" evidence=ISS]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0088 HOGENOM:HOG000248767
KO:K02926 Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 ProtClustDB:PRK05319
HAMAP:MF_01328_B RefSeq:YP_506158.1 ProteinModelPortal:Q2GED8
STRING:Q2GED8 GeneID:3931993 KEGG:nse:NSE_0267 PATRIC:22680625
OMA:WGSSANV BioCyc:NSEN222891:GHFU-294-MONOMER Uniprot:Q2GED8
Length = 214
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 65/116 (56%), Positives = 77/116 (66%)
Query: 110 DKGFMVLAGDV------FDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWR 163
D G LAG V + P R D++ V+ WQLAKR+ GTH TK ISEVSGT +KP+R
Sbjct: 10 DFGASSLAGSVAVDRALIEAPFRPDLLSLVINWQLAKRRAGTHKTKGISEVSGTTRKPYR 69
Query: 164 QKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
QKGTGRAR G+LR PQFR G + GP R H +NKKVR L L+ ALS R AEG+
Sbjct: 70 QKGTGRARQGSLRAPQFRKGGIVFGPVVRQHGFSVNKKVRSLALRSALSMRFAEGR 125
>TIGR_CMR|ECH_0410 [details] [associations]
symbol:ECH_0410 "ribosomal protein L4" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0042255 "ribosome assembly" evidence=ISS]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0088 HOGENOM:HOG000248767 KO:K02926
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 OMA:GKAHGPV ProtClustDB:PRK05319
HAMAP:MF_01328_B RefSeq:YP_507228.1 ProteinModelPortal:Q2GH55
STRING:Q2GH55 GeneID:3927219 KEGG:ech:ECH_0410 PATRIC:20576297
BioCyc:ECHA205920:GJNR-411-MONOMER Uniprot:Q2GH55
Length = 205
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 63/108 (58%), Positives = 75/108 (69%)
Query: 108 NEDK-GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKG 166
N D+ G + L +F V R DI+ VV WQL+KR+ GTH KTI ++SGT KP RQK
Sbjct: 9 NSDRIGTIDLNPLIFSVNYRPDILKMVVDWQLSKRRAGTHKAKTIGDISGTTAKPHRQKH 68
Query: 167 TGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
TGRAR G+LR PQFRGG + GP RSHA LNKKVR LGLK+ALS +
Sbjct: 69 TGRARQGSLRSPQFRGGAVIFGPVVRSHAYSLNKKVRNLGLKVALSLK 116
>DICTYBASE|DDB_G0283275 [details] [associations]
symbol:DDB_G0283275 "ribosomal protein L4P family
protein" species:44689 "Dictyostelium discoideum" [GO:0006412
"translation" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
dictyBase:DDB_G0283275 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AAFI02000052 eggNOG:COG0088 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 RefSeq:XP_639132.1 ProteinModelPortal:Q54RB5
STRING:Q54RB5 EnsemblProtists:DDB0185424 GeneID:8624003
KEGG:ddi:DDB_G0283275 InParanoid:Q54RB5 OMA:ANTKTRG
ProtClustDB:CLSZ2430382 Uniprot:Q54RB5
Length = 258
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 69/178 (38%), Positives = 94/178 (52%)
Query: 42 CSGDNLFPLKSGLSFLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVI 101
C ++ G F S K++TT T + + L KT+ P + D +
Sbjct: 6 CKSFQKISIQRGFEFSNSLKYTTTTTTTTVQKKT-AAQLFADKTIEVPVLNFN---DKLS 61
Query: 102 PVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
P+ N + L+ DVF VP+R D++HR+VR+Q AK QQGTH + + T KKP
Sbjct: 62 PIEN--------IQLSKDVFSVPLRVDLLHRMVRYQRAKSQQGTHQALNMGRMERTNKKP 113
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
RQKG+G AR GT FRGG P RSHA L +KVR+L LK+ALS + A+ K
Sbjct: 114 TRQKGSGNARKGTNHSVHFRGGARTFAPTMRSHAHDLPRKVRKLCLKVALSTKLAQNK 171
>TIGR_CMR|BA_0111 [details] [associations]
symbol:BA_0111 "ribosomal protein L4" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 eggNOG:COG0088
HOGENOM:HOG000248767 KO:K02926 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 OMA:GKAHGPV ProtClustDB:PRK05319
HAMAP:MF_01328_B RefSeq:NP_842679.1 RefSeq:YP_016716.1
RefSeq:YP_026397.1 ProteinModelPortal:Q81VS9 DNASU:1086331
EnsemblBacteria:EBBACT00000008905 EnsemblBacteria:EBBACT00000014698
EnsemblBacteria:EBBACT00000019905 GeneID:1086331 GeneID:2819212
GeneID:2850889 KEGG:ban:BA_0111 KEGG:bar:GBAA_0111 KEGG:bat:BAS0111
BioCyc:BANT260799:GJAJ-122-MONOMER
BioCyc:BANT261594:GJ7F-124-MONOMER Uniprot:Q81VS9
Length = 207
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 58/117 (49%), Positives = 75/117 (64%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + LA +F + + ++ V Q A +QGTH KT SEV G G+K
Sbjct: 4 VTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A KL KKVRRL +K AL+ + E
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVE 120
>UNIPROTKB|Q3A9R7 [details] [associations]
symbol:rplD "50S ribosomal protein L4" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0088 HOGENOM:HOG000248767
KO:K02926 Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 OMA:GKAHGPV ProtClustDB:PRK05319
HAMAP:MF_01328_B RefSeq:YP_361117.1 ProteinModelPortal:Q3A9R7
STRING:Q3A9R7 GeneID:3728653 KEGG:chy:CHY_2308 PATRIC:21277687
BioCyc:CHYD246194:GJCN-2307-MONOMER Uniprot:Q3A9R7
Length = 206
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 55/117 (47%), Positives = 75/117 (64%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV N G + L ++F P+ K +++ V LA +++GTH TKT EVSG G+K
Sbjct: 4 VPVYNMEGAQVGEIELKDEIFGAPVNKAVLYEVSLMYLANQRRGTHDTKTRGEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
PWRQKGTGRARHG++R P +R G + GP PR ++ + KKVRR LK ALS + E
Sbjct: 64 PWRQKGTGRARHGSIRSPLWRKGGIVFGPHPRDYSYSVPKKVRRAALKSALSDKVNE 120
>TIGR_CMR|CHY_2308 [details] [associations]
symbol:CHY_2308 "ribosomal protein L4" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0088 HOGENOM:HOG000248767
KO:K02926 Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 OMA:GKAHGPV ProtClustDB:PRK05319
HAMAP:MF_01328_B RefSeq:YP_361117.1 ProteinModelPortal:Q3A9R7
STRING:Q3A9R7 GeneID:3728653 KEGG:chy:CHY_2308 PATRIC:21277687
BioCyc:CHYD246194:GJCN-2307-MONOMER Uniprot:Q3A9R7
Length = 206
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 55/117 (47%), Positives = 75/117 (64%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV N G + L ++F P+ K +++ V LA +++GTH TKT EVSG G+K
Sbjct: 4 VPVYNMEGAQVGEIELKDEIFGAPVNKAVLYEVSLMYLANQRRGTHDTKTRGEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
PWRQKGTGRARHG++R P +R G + GP PR ++ + KKVRR LK ALS + E
Sbjct: 64 PWRQKGTGRARHGSIRSPLWRKGGIVFGPHPRDYSYSVPKKVRRAALKSALSDKVNE 120
>UNIPROTKB|P60729 [details] [associations]
symbol:rplD "50S ribosomal protein L4" species:1773
"Mycobacterium tuberculosis" [GO:0005829 "cytosol" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0040007 "growth"
evidence=IMP] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
GO:GO:0005829 GO:GO:0005886 GO:GO:0040007 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0006412
GO:GO:0005840 EMBL:BX842574 GO:GO:0003735 GO:GO:0019843
eggNOG:COG0088 HOGENOM:HOG000248767 KO:K02926 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 ProtClustDB:PRK05319 HAMAP:MF_01328_B PIR:A70642
RefSeq:NP_215216.1 RefSeq:NP_335146.1 RefSeq:YP_006514046.1
ProteinModelPortal:P60729 SMR:P60729 PRIDE:P60729
EnsemblBacteria:EBMYCT00000000063 EnsemblBacteria:EBMYCT00000070302
GeneID:13318591 GeneID:888345 GeneID:926019 KEGG:mtc:MT0729
KEGG:mtu:Rv0702 KEGG:mtv:RVBD_0702 PATRIC:18123335
TubercuList:Rv0702 OMA:GAGRKPF Uniprot:P60729
Length = 223
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 57/108 (52%), Positives = 74/108 (68%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FDVP ++H+VV Q A +QGTHSTKT EVSG G+KP+RQKGTGRAR
Sbjct: 22 GAIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRAR 81
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
G+ R PQF GG +HGPKPR ++ + KK+ L+ ALS RA G+
Sbjct: 82 QGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNGR 129
>UNIPROTKB|K7ELQ0 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 EMBL:AC011511 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 HGNC:HGNC:14276 Ensembl:ENST00000588502
Uniprot:K7ELQ0
Length = 220
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 73/172 (42%), Positives = 95/172 (55%)
Query: 49 PLKSGLSFLASRKFSTTILTPD--SSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNF 106
PL+ GLS LA T P+ +SEG P +L K + P + Q V + F
Sbjct: 16 PLQ-GLSSLAEEAARATE-NPEQVASEG-LPEPVLRKVELPVPTHRRPV-QAWVESLRGF 71
Query: 107 FNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKG 166
E G L DVF R DI+H+V WQ ++ TKT +EV G G+KPW QKG
Sbjct: 72 EQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKG 131
Query: 167 TGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAE 217
TGRARHG++R P +RGG HGP+ P S+ L KVR LGLK+AL+ + A+
Sbjct: 132 TGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQ 183
>UNIPROTKB|K7ES61 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 EMBL:AC011511 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 HAMAP:MF_01328_B HGNC:HGNC:14276
Ensembl:ENST00000592514 Uniprot:K7ES61
Length = 300
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 71/168 (42%), Positives = 92/168 (54%)
Query: 53 GLSFLASRKFSTTILTPD--SSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNED 110
GLS LA T P+ +SEG P +L K + P + Q V + F E
Sbjct: 20 GLSSLAEEAARATE-NPEQVASEG-LPEPVLRKVELPVPTHRRPV-QAWVESLRGFEQER 76
Query: 111 KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRA 170
G L DVF R DI+H+V WQ ++ TKT +EV G G+KPW QKGTGRA
Sbjct: 77 VGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRA 136
Query: 171 RHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAE 217
RHG++R P +RGG HGP+ P S+ L KVR LGLK+AL+ + A+
Sbjct: 137 RHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQ 184
>UNIPROTKB|Q9BYD3 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
EMBL:AB049635 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:CH471106 EMBL:AC011511 eggNOG:COG0088
HOGENOM:HOG000248767 Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953 OMA:GKAHGPV
CTD:51073 HOVERGEN:HBG083638 OrthoDB:EOG4XKV7V EMBL:AF132962
EMBL:BC000756 EMBL:BC009858 EMBL:AY007152 IPI:IPI00023334
IPI:IPI00107137 RefSeq:NP_057040.2 RefSeq:NP_666499.1
RefSeq:NP_666500.1 UniGene:Hs.279652 ProteinModelPortal:Q9BYD3
SMR:Q9BYD3 IntAct:Q9BYD3 MINT:MINT-1389069 STRING:Q9BYD3
PhosphoSite:Q9BYD3 DMDM:74733471 PaxDb:Q9BYD3 PRIDE:Q9BYD3
Ensembl:ENST00000253099 Ensembl:ENST00000307422
Ensembl:ENST00000393733 GeneID:51073 KEGG:hsa:51073 UCSC:uc002mnm.3
UCSC:uc002mno.3 GeneCards:GC19P010362 HGNC:HGNC:14276 HPA:HPA051261
MIM:611823 neXtProt:NX_Q9BYD3 PharmGKB:PA30971 InParanoid:Q9BYD3
PhylomeDB:Q9BYD3 ChiTaRS:MRPL4 GenomeRNAi:51073 NextBio:53691
Bgee:Q9BYD3 CleanEx:HS_MRPL4 Genevestigator:Q9BYD3
GermOnline:ENSG00000105364 Uniprot:Q9BYD3
Length = 311
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 71/168 (42%), Positives = 92/168 (54%)
Query: 53 GLSFLASRKFSTTILTPD--SSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNED 110
GLS LA T P+ +SEG P +L K + P + Q V + F E
Sbjct: 20 GLSSLAEEAARATE-NPEQVASEG-LPEPVLRKVELPVPTHRRPV-QAWVESLRGFEQER 76
Query: 111 KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRA 170
G L DVF R DI+H+V WQ ++ TKT +EV G G+KPW QKGTGRA
Sbjct: 77 VGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRA 136
Query: 171 RHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAE 217
RHG++R P +RGG HGP+ P S+ L KVR LGLK+AL+ + A+
Sbjct: 137 RHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQ 184
>MGI|MGI:2137210 [details] [associations]
symbol:Mrpl4 "mitochondrial ribosomal protein L4"
species:10090 "Mus musculus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 MGI:MGI:2137210
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0088 HOGENOM:HOG000248767 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 CTD:51073 GeneTree:ENSGT00390000014512
HOVERGEN:HBG083638 OMA:VYGLNVY OrthoDB:EOG4XKV7V EMBL:AB049634
EMBL:AB041599 EMBL:AK002464 EMBL:BC037064 EMBL:BC039983
EMBL:BC061095 IPI:IPI00121359 RefSeq:NP_075656.2 UniGene:Mm.427576
ProteinModelPortal:Q9DCU6 SMR:Q9DCU6 STRING:Q9DCU6
PhosphoSite:Q9DCU6 PaxDb:Q9DCU6 PRIDE:Q9DCU6
Ensembl:ENSMUST00000003386 GeneID:66163 KEGG:mmu:66163
UCSC:uc009oju.1 InParanoid:Q9DCU6 NextBio:320818 Bgee:Q9DCU6
CleanEx:MM_MRPL4 Genevestigator:Q9DCU6
GermOnline:ENSMUSG00000003299 Uniprot:Q9DCU6
Length = 294
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 65/150 (43%), Positives = 85/150 (56%)
Query: 66 ILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPI 125
I P S G D +L+K L + Q V + F E G L DVF
Sbjct: 34 ISEPRDSAGLL--DPVLRKCELRIPVHRRPVQAWVESLRGFEQERIGLAELHPDVFATAP 91
Query: 126 RKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTT 185
R DI+H+V WQ R+ +TKT +EVSG G+KPW+QKG+GRARHG++R P +RGG
Sbjct: 92 RLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKPWQQKGSGRARHGSIRSPLWRGGGV 151
Query: 186 MHGPK-PRSHAIKLNKKVRRLGLKIALSAR 214
HGP+ P S+ L KVR LGLK+AL+ +
Sbjct: 152 AHGPRGPTSYYYMLPMKVRALGLKVALTVK 181
>TIGR_CMR|SPO_3824 [details] [associations]
symbol:SPO_3824 "ribosomal protein L4" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0088 HOGENOM:HOG000248767 KO:K02926
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 OMA:GKAHGPV ProtClustDB:PRK05319
HAMAP:MF_01328_B RefSeq:YP_169012.1 ProteinModelPortal:Q5LLU7
PRIDE:Q5LLU7 GeneID:3195311 KEGG:sil:SPO3824 PATRIC:23381149
Uniprot:Q5LLU7
Length = 205
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 55/100 (55%), Positives = 66/100 (66%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + R DI+HRVVRWQ Q GTH T SEVS + KK +RQKGTG ARHG+ + P
Sbjct: 22 LFGLEPRADILHRVVRWQRNNAQAGTHKVLTKSEVSYSTKKIYRQKGTGGARHGSRKSPT 81
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
FR G GP PRSH L KK R+LGL+ ALSA+A G+
Sbjct: 82 FRHGGVYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAGE 121
>ZFIN|ZDB-GENE-050522-388 [details] [associations]
symbol:zgmrpl4 "mitochondrial ribosomal protein L4"
species:7955 "Danio rerio" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
ZFIN:ZDB-GENE-050522-388 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 eggNOG:COG0088 HOGENOM:HOG000248767
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 GeneTree:ENSGT00390000014512
HOVERGEN:HBG083638 OMA:VYGLNVY OrthoDB:EOG4XKV7V EMBL:BC095145
IPI:IPI00505153 RefSeq:NP_001018572.1 UniGene:Dr.14878
STRING:Q503X2 Ensembl:ENSDART00000081765 GeneID:553771
KEGG:dre:553771 CTD:553771 InParanoid:Q503X2 NextBio:20880493
Bgee:Q503X2 Uniprot:Q503X2
Length = 302
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 56/111 (50%), Positives = 74/111 (66%)
Query: 108 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGT 167
++ G + L DVF VPIR DI+H V WQ ++ + KT +EV G G+KPW+QK T
Sbjct: 83 SDQLGVVDLHPDVFSVPIRLDILHAVEVWQRNFKRISYANVKTRAEVRGGGRKPWQQKRT 142
Query: 168 GRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAE 217
GRARHG++R P +RGG +HGP+ P S+ L KVR GLKIALSA+ A+
Sbjct: 143 GRARHGSIRSPLWRGGGIIHGPRGPTSYYYMLPMKVRVQGLKIALSAKLAQ 193
>RGD|1311777 [details] [associations]
symbol:Mrpl4 "mitochondrial ribosomal protein L4" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002136 InterPro:IPR023574
Pfam:PF00573 RGD:1311777 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:CH473993 Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953
HAMAP:MF_01328_B CTD:51073 GeneTree:ENSGT00390000014512 OMA:VYGLNVY
OrthoDB:EOG4XKV7V IPI:IPI00201814 RefSeq:NP_001102224.1
UniGene:Rn.13113 Ensembl:ENSRNOT00000049706 GeneID:363023
KEGG:rno:363023 UCSC:RGD:1311777 NextBio:682165 Uniprot:D4A131
Length = 294
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 64/150 (42%), Positives = 83/150 (55%)
Query: 66 ILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPI 125
I P S G D +L+K L Q V + F E G L DVF
Sbjct: 34 ISEPGDSAGLL--DPVLRKCELPIPAPRRPVQAWVESLRGFEQERIGLAELHPDVFATTP 91
Query: 126 RKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTT 185
R DI+H+V WQ ++ TKT +EVSG G+KPW+QKG+GRARHG++R P +RGG
Sbjct: 92 RLDILHQVAVWQRNFKRISYAKTKTRAEVSGGGRKPWQQKGSGRARHGSIRSPIWRGGGV 151
Query: 186 MHGPK-PRSHAIKLNKKVRRLGLKIALSAR 214
HGP+ P S+ L KVR LGLK+AL+ +
Sbjct: 152 AHGPRGPTSYYYMLPMKVRALGLKVALTVK 181
>UNIPROTKB|Q32PI6 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0088 HOGENOM:HOG000248767 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 PDB:2FTC PDBsum:2FTC EMBL:BC108102
IPI:IPI00700987 RefSeq:NP_001032527.1 UniGene:Bt.40442
STRING:Q32PI6 PRIDE:Q32PI6 Ensembl:ENSBTAT00000001861 GeneID:507154
KEGG:bta:507154 CTD:51073 GeneTree:ENSGT00390000014512
HOVERGEN:HBG083638 InParanoid:Q32PI6 OMA:VYGLNVY OrthoDB:EOG4XKV7V
EvolutionaryTrace:Q32PI6 NextBio:20867926 Uniprot:Q32PI6
Length = 294
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 63/166 (37%), Positives = 88/166 (53%)
Query: 53 GLSFLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKG 112
GLS L + P+ A P +L++ L + Q V + + E G
Sbjct: 20 GLSALTEEAVQSAE-KPEPLANAGPQAPVLRRCELPVPLHRRPVQAWVESLRGYEQERVG 78
Query: 113 FMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARH 172
L DVF R DI+H+V WQ ++ TKT +EV G G+KPW+QKG+GRARH
Sbjct: 79 LTELHPDVFSTAPRLDILHQVAIWQKNFKRISYAKTKTRAEVRGGGRKPWQQKGSGRARH 138
Query: 173 GTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAE 217
G++R P +RGG HGP+ P S+ L KVR GLK+AL+ + A+
Sbjct: 139 GSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRVQGLKVALTVKLAQ 184
>UNIPROTKB|F1PB94 [details] [associations]
symbol:MRPL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953
HAMAP:MF_01328_B CTD:51073 GeneTree:ENSGT00390000014512 OMA:VYGLNVY
EMBL:AAEX03012426 RefSeq:XP_854013.1 Ensembl:ENSCAFT00000028364
GeneID:611273 KEGG:cfa:611273 Uniprot:F1PB94
Length = 294
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 57/150 (38%), Positives = 83/150 (55%)
Query: 69 PDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKD 128
P++ A P + +L++ L Q V + + E G L +VF R D
Sbjct: 35 PEAVGSAGPQEPVLRRCELPVPAPRRPVQAWVESLRGYEQERVGLAELHPEVFSTAPRLD 94
Query: 129 IIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHG 188
I+H+V WQ ++ TKT +EV G G+KPW QKG+GR+RHG++R P +RGG HG
Sbjct: 95 ILHQVAIWQRNFKRISYAKTKTRAEVQGGGRKPWPQKGSGRSRHGSIRSPIWRGGGIAHG 154
Query: 189 PK-PRSHAIKLNKKVRRLGLKIALSARAAE 217
P+ P S+ L KVR GLK+AL+ + A+
Sbjct: 155 PRGPTSYYYMLPMKVRVQGLKVALTVKLAQ 184
>UNIPROTKB|F1S3J8 [details] [associations]
symbol:MRPL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 GO:GO:0005739
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 HAMAP:MF_01328_B GeneTree:ENSGT00390000014512
OMA:VYGLNVY EMBL:CU657936 RefSeq:XP_003123269.2
Ensembl:ENSSSCT00000014920 GeneID:100511369 KEGG:ssc:100511369
Uniprot:F1S3J8
Length = 294
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 52/110 (47%), Positives = 68/110 (61%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
E G L DVF R DI+H+V WQ ++ TKT +EV G G+KPW QKG+G
Sbjct: 75 ERVGLTELHPDVFSTAPRLDILHQVAIWQKNFKRISYAKTKTRAEVRGGGRKPWVQKGSG 134
Query: 169 RARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAE 217
RARHG++R P +RGG HGP+ P S+ L KVR GLK+AL+ + A+
Sbjct: 135 RARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRVQGLKVALTVKLAQ 184
>TIGR_CMR|GSU_2856 [details] [associations]
symbol:GSU_2856 "ribosomal protein L4" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0088 HOGENOM:HOG000248767 KO:K02926 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 OMA:GKAHGPV ProtClustDB:PRK05319
HAMAP:MF_01328_B RefSeq:NP_953899.1 ProteinModelPortal:P61063
GeneID:2686778 KEGG:gsu:GSU2856 PATRIC:22028559
BioCyc:GSUL243231:GH27-2830-MONOMER Uniprot:P61063
Length = 207
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 50/119 (42%), Positives = 72/119 (60%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V + G M L +VF+ +++ +IH ++ QLA R+ GT S K + VSG GKK
Sbjct: 4 IDVFDISKNKVGVMDLNDNVFNGEVKEYLIHEAIKVQLANRRAGTVSVKNRAIVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
P+RQKGTG+AR G +R P F GG GP+P+ + + +NKK R+ ++ ALS E K
Sbjct: 64 PYRQKGTGQARQGCIRAPHFVGGGVAFGPRPKVYNLSMNKKARKAAVRSALSMLYKENK 122
>FB|FBgn0001995 [details] [associations]
symbol:mRpL4 "mitochondrial ribosomal protein L4"
species:7227 "Drosophila melanogaster" [GO:0005762 "mitochondrial
large ribosomal subunit" evidence=ISS] [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
EMBL:AE014134 GO:GO:0006412 GO:GO:0005762 GO:GO:0003735
eggNOG:COG0088 Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953 CTD:51073
GeneTree:ENSGT00390000014512 OMA:VYGLNVY EMBL:AY061407
RefSeq:NP_524939.1 UniGene:Dm.1535 SMR:Q9V3D0 IntAct:Q9V3D0
STRING:Q9V3D0 EnsemblMetazoa:FBtr0080843 GeneID:49425
KEGG:dme:Dmel_CG5818 UCSC:CG5818-RA FlyBase:FBgn0001995
InParanoid:Q9V3D0 OrthoDB:EOG43FFCQ GenomeRNAi:49425 NextBio:839752
Uniprot:Q9V3D0
Length = 296
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 50/107 (46%), Positives = 60/107 (56%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L DVF R DII V WQ R TKT +EV G G+KPW QKG GRAR
Sbjct: 81 GLIELHPDVFAAQPRVDIIQENVEWQSKYRYVSMAHTKTRAEVRGGGRKPWPQKGGGRAR 140
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAE 217
HG+LR P +GG +HGP+ P +H L R LGL LS + A+
Sbjct: 141 HGSLRSPMLKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQ 187
>TIGR_CMR|DET_0475 [details] [associations]
symbol:DET_0475 "ribosomal protein L4" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0019843 eggNOG:COG0088 KO:K02926 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 ProtClustDB:PRK05319 HAMAP:MF_01328_B
HOGENOM:HOG000248766 OMA:PWNQKGT RefSeq:YP_181219.1 STRING:Q3Z980
GeneID:3230154 KEGG:det:DET0475 PATRIC:21608019
BioCyc:DETH243164:GJNF-475-MONOMER Uniprot:Q3Z980
Length = 210
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 50/119 (42%), Positives = 68/119 (57%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
IPV N E + ++ DVF VP + ++H+ Q A +QGT STKT EV G+ +K
Sbjct: 3 IPVYNASGEIIKNISISEDVFGVPFNEALVHQAFVAQQANARQGTQSTKTRGEVQGSSRK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
+RQKGTG AR GT R P R G GP+PR + L KK+RR ++ LS + G+
Sbjct: 63 IYRQKGTGNARMGTNRSPVRRHGGVAFGPRPRDFSKDLPKKMRRQAIRCVLSFKLESGE 121
>TIGR_CMR|CBU_0239 [details] [associations]
symbol:CBU_0239 "ribosomal protein L4" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR002136 InterPro:IPR023574
Pfam:PF00573 GO:GO:0006412 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0088 KO:K02926 Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953
ProtClustDB:PRK05319 HAMAP:MF_01328_B HOGENOM:HOG000248766
OMA:PWNQKGT RefSeq:NP_819283.2 ProteinModelPortal:Q83ES3 SMR:Q83ES3
GeneID:1208120 KEGG:cbu:CBU_0239 PATRIC:17929171
BioCyc:CBUR227377:GJ7S-245-MONOMER Uniprot:Q83ES3
Length = 205
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 45/112 (40%), Positives = 64/112 (57%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV +F ++ + +A F ++ ++H+VV LA + GT + KT EVSG G K
Sbjct: 3 LPVNSFDKKEASTLTVADSAFGSEYKEGLVHQVVNAYLAGGRAGTKAQKTRREVSGGGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALS 212
PWRQKGTGRAR G+ R P +R G KPR K+N+K+ R + LS
Sbjct: 63 PWRQKGTGRARAGSSRSPLWRSGGVAFAAKPRDFTQKVNRKMYRSAMASILS 114
>TIGR_CMR|SO_0232 [details] [associations]
symbol:SO_0232 "ribosomal protein L4" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 GO:GO:0006412
GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003735
GO:GO:0019843 eggNOG:COG0088 KO:K02926 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 ProtClustDB:PRK05319 HAMAP:MF_01328_B
HOGENOM:HOG000248766 RefSeq:NP_715872.1 ProteinModelPortal:Q8EK67
SMR:Q8EK67 PRIDE:Q8EK67 GeneID:1168115 KEGG:son:SO_0232
PATRIC:23520157 OMA:AHNIVIS Uniprot:Q8EK67
Length = 201
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 43/84 (51%), Positives = 58/84 (69%)
Query: 129 IIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHG 188
++H+VV A +QGT + KT +EV+G+GKKPWRQKGTGRAR G ++GP +RGG
Sbjct: 27 LVHQVVVAYAANARQGTRAQKTRAEVTGSGKKPWRQKGTGRARAGGVKGPIWRGGGVTFA 86
Query: 189 PKPRSHAIKLNKKVRRLGLKIALS 212
K + H+ K+NKK+ R LK LS
Sbjct: 87 AKTQDHSQKVNKKMYRGALKSILS 110
>UNIPROTKB|Q9KNY5 [details] [associations]
symbol:rplD "50S ribosomal protein L4" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR002136 InterPro:IPR023574
Pfam:PF00573 GO:GO:0006417 GO:GO:0006355 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 GO:GO:0006353 eggNOG:COG0088 KO:K02926
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 ProtClustDB:PRK05319
HAMAP:MF_01328_B OMA:AHNIVIS PIR:E82059 RefSeq:NP_232223.1
ProteinModelPortal:Q9KNY5 SMR:Q9KNY5 DNASU:2615612 GeneID:2615612
KEGG:vch:VC2595 PATRIC:20084216 Uniprot:Q9KNY5
Length = 200
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 45/99 (45%), Positives = 61/99 (61%)
Query: 114 MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
+ ++ F + ++H+VV A +QGT + KT SEVSG G KPWRQKGTGRAR G
Sbjct: 11 LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGGAKPWRQKGTGRARAG 70
Query: 174 TLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALS 212
T+R P +R G KP+ H+ K+NKK+ R +K LS
Sbjct: 71 TIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILS 109
>TIGR_CMR|VC_2595 [details] [associations]
symbol:VC_2595 "ribosomal protein L4" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 GO:GO:0006417
GO:GO:0006355 GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 GO:GO:0006353
eggNOG:COG0088 KO:K02926 Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953
ProtClustDB:PRK05319 HAMAP:MF_01328_B OMA:AHNIVIS PIR:E82059
RefSeq:NP_232223.1 ProteinModelPortal:Q9KNY5 SMR:Q9KNY5
DNASU:2615612 GeneID:2615612 KEGG:vch:VC2595 PATRIC:20084216
Uniprot:Q9KNY5
Length = 200
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 45/99 (45%), Positives = 61/99 (61%)
Query: 114 MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
+ ++ F + ++H+VV A +QGT + KT SEVSG G KPWRQKGTGRAR G
Sbjct: 11 LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGGAKPWRQKGTGRARAG 70
Query: 174 TLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALS 212
T+R P +R G KP+ H+ K+NKK+ R +K LS
Sbjct: 71 TIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILS 109
>POMBASE|SPBC2D10.08c [details] [associations]
symbol:SPBC2D10.08c "mitochondrial ribosomal protein
subunit Yml6 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0005762
"mitochondrial large ribosomal subunit" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0032543 "mitochondrial translation"
evidence=NAS] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
PomBase:SPBC2D10.08c EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0005762 GO:GO:0003735 GO:GO:0032543 eggNOG:COG0088
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 PIR:T40111 RefSeq:NP_596227.1
ProteinModelPortal:O74801 STRING:O74801 EnsemblFungi:SPBC2D10.08c.1
GeneID:2540449 KEGG:spo:SPBC2D10.08c HOGENOM:HOG000176814
OMA:TILENPI OrthoDB:EOG41G6DC NextBio:20801576 Uniprot:O74801
Length = 261
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 44/106 (41%), Positives = 62/106 (58%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
E ++ G R+DI+HR V ++ +QGT S+K +E++ +G+K +RQKGTG
Sbjct: 17 EPASLFLIPGSFLQERFRRDILHRAVIYEADNDRQGTASSKRRNEITCSGRKLYRQKGTG 76
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
AR G P RGG HGPKPR + KL +V L ++IALS R
Sbjct: 77 HARVGDASSPIRRGGAKSHGPKPRDFSTKLQTQVYNLAMRIALSTR 122
>UNIPROTKB|P60723 [details] [associations]
symbol:rplD species:83333 "Escherichia coli K-12"
[GO:0030371 "translation repressor activity" evidence=IDA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IDA] [GO:0046677 "response to antibiotic" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0019843
"rRNA binding" evidence=IEA] [GO:0006353 "DNA-dependent
transcription, termination" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 GO:GO:0006355
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0030371 GO:GO:0006412 GO:GO:0046677
EMBL:U18997 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 GO:GO:0006353
PDB:2VHM PDBsum:2VHM PDB:2RDO PDBsum:2RDO eggNOG:COG0088 KO:K02926
OMA:FDILNAN Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953 PDB:3J0T
PDB:3J0W PDB:3J0Y PDB:3J11 PDB:3J12 PDB:3J14 PDB:3SGF PDB:3UOS
PDBsum:3J0T PDBsum:3J0W PDBsum:3J0Y PDBsum:3J11 PDBsum:3J12
PDBsum:3J14 PDBsum:3SGF PDBsum:3UOS PDB:1P85 PDB:1P86 PDB:1VS6
PDB:1VS8 PDB:1VT2 PDB:2AW4 PDB:2AWB PDB:2GYA PDB:2GYC PDB:2I2T
PDB:2I2V PDB:2J28 PDB:2QAM PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE
PDB:2QBG PDB:2QBI PDB:2QBK PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1
PDB:2VHN PDB:2WWQ PDB:2Z4L PDB:2Z4N PDB:3DF2 PDB:3DF4 PDB:3E1B
PDB:3E1D PDB:3FIK PDB:3I1N PDB:3I1P PDB:3I1R PDB:3I1T PDB:3I20
PDB:3I22 PDB:3IZT PDB:3IZU PDB:3J01 PDB:3J19 PDB:3KCR PDB:3OAS
PDB:3OAT PDB:3OFC PDB:3OFD PDB:3OFQ PDB:3OFR PDB:3OFZ PDB:3OG0
PDB:3ORB PDB:3R8S PDB:3R8T PDB:4GAR PDB:4GAU PDBsum:1P85
PDBsum:1P86 PDBsum:1VS6 PDBsum:1VS8 PDBsum:1VT2 PDBsum:2AW4
PDBsum:2AWB PDBsum:2GYA PDBsum:2GYC PDBsum:2I2T PDBsum:2I2V
PDBsum:2J28 PDBsum:2QAM PDBsum:2QAO PDBsum:2QBA PDBsum:2QBC
PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI PDBsum:2QBK PDBsum:2QOV
PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1 PDBsum:2VHN PDBsum:2WWQ
PDBsum:2Z4L PDBsum:2Z4N PDBsum:3DF2 PDBsum:3DF4 PDBsum:3E1B
PDBsum:3E1D PDBsum:3FIK PDBsum:3I1N PDBsum:3I1P PDBsum:3I1R
PDBsum:3I1T PDBsum:3I20 PDBsum:3I22 PDBsum:3IZT PDBsum:3IZU
PDBsum:3J01 PDBsum:3J19 PDBsum:3KCR PDBsum:3OAS PDBsum:3OAT
PDBsum:3OFC PDBsum:3OFD PDBsum:3OFQ PDBsum:3OFR PDBsum:3OFZ
PDBsum:3OG0 PDBsum:3ORB PDBsum:3R8S PDBsum:3R8T PDBsum:4GAR
PDBsum:4GAU PDB:3BBX PDBsum:3BBX EMBL:X02613 ProtClustDB:PRK05319
HAMAP:MF_01328_B HOGENOM:HOG000248766 PIR:C23129 RefSeq:NP_417778.1
RefSeq:YP_492113.1 ProteinModelPortal:P60723 SMR:P60723
DIP:DIP-35791N IntAct:P60723 MINT:MINT-1219709 PaxDb:P60723
PRIDE:P60723 EnsemblBacteria:EBESCT00000004275
EnsemblBacteria:EBESCT00000015064 GeneID:12932297 GeneID:947818
KEGG:ecj:Y75_p3857 KEGG:eco:b3319 PATRIC:32122070 EchoBASE:EB0860
EcoGene:EG10867 BioCyc:EcoCyc:EG10867-MONOMER
BioCyc:ECOL316407:JW3281-MONOMER ChEMBL:CHEMBL1931
EvolutionaryTrace:P60723 Genevestigator:P60723 Uniprot:P60723
Length = 201
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 42/99 (42%), Positives = 63/99 (63%)
Query: 114 MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
+ ++ F + ++H+VV A +QGT + KT +EV+G+GKKPWRQKGTGRAR G
Sbjct: 12 LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSG 71
Query: 174 TLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALS 212
+++ P +R G +P+ H+ K+NKK+ R LK LS
Sbjct: 72 SIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILS 110
>UNIPROTKB|K7EJ73 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 EMBL:AC011511 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
HGNC:HGNC:14276 Ensembl:ENST00000590702 Uniprot:K7EJ73
Length = 119
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 41/71 (57%), Positives = 52/71 (73%)
Query: 148 TKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLG 206
TKT +EV G G+KPW QKGTGRARHG++R P +RGG HGP+ P S+ L KVR LG
Sbjct: 12 TKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALG 71
Query: 207 LKIALSARAAE 217
LK+AL+ + A+
Sbjct: 72 LKVALTVKLAQ 82
>TIGR_CMR|CPS_0872 [details] [associations]
symbol:CPS_0872 "ribosomal protein L4" species:167879
"Colwellia psychrerythraea 34H" [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
GO:GO:0006412 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0088 KO:K02926
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 ProtClustDB:PRK05319
HAMAP:MF_01328_B RefSeq:YP_267621.1 ProteinModelPortal:Q487Z4
SMR:Q487Z4 STRING:Q487Z4 GeneID:3518520 KEGG:cps:CPS_0872
PATRIC:21465037 HOGENOM:HOG000248766 OMA:PWNQKGT
BioCyc:CPSY167879:GI48-958-MONOMER Uniprot:Q487Z4
Length = 201
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 45/101 (44%), Positives = 61/101 (60%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + ++ F + ++H+VV A +QGT + KT SEVSG G KPWRQKGTGRAR
Sbjct: 10 GALEVSEATFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGGAKPWRQKGTGRAR 69
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALS 212
GT RGP +R G KP+ H+ K+N+K+ R + LS
Sbjct: 70 AGTTRGPIWRTGGVTFAAKPQDHSQKVNRKMYRGAIASILS 110
>UNIPROTKB|K7ELF1 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 EMBL:AC011511 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
HGNC:HGNC:14276 Ensembl:ENST00000590150 Uniprot:K7ELF1
Length = 163
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 57/137 (41%), Positives = 73/137 (53%)
Query: 49 PLKSGLSFLASRKFSTTILTPD--SSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNF 106
PL+ GLS LA T P+ +SEG P +L K + P + Q V + F
Sbjct: 28 PLQ-GLSSLAEEAARATE-NPEQVASEG-LPEPVLRKVELPVPTHRRPV-QAWVESLRGF 83
Query: 107 FNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKG 166
E G L DVF R DI+H+V WQ ++ TKT +EV G G+KPW QKG
Sbjct: 84 EQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKG 143
Query: 167 TGRARHGTLRGPQFRGG 183
TGRARHG++R P +RGG
Sbjct: 144 TGRARHGSIRSPLWRGG 160
>TAIR|locus:2025107 [details] [associations]
symbol:RPL4 "ribosomal protein L4" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0022626
"cytosolic ribosome" evidence=IDA] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] [GO:0000311 "plastid large ribosomal subunit"
evidence=TAS] [GO:0009547 "plastid ribosome" evidence=IPI]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009570 GO:GO:0008266
GO:GO:0006412 GO:GO:0003735 GO:GO:0009535 GO:GO:0022626
GO:GO:0019843 EMBL:AC022464 UniGene:At.68122 GO:GO:0000311
EMBL:Y14565 EMBL:Y14566 EMBL:AY063889 EMBL:AY117317 EMBL:AY085081
IPI:IPI00519853 PIR:D86208 RefSeq:NP_001030985.1
RefSeq:NP_001030986.1 RefSeq:NP_563786.1 UniGene:At.10172
ProteinModelPortal:O50061 SMR:O50061 STRING:O50061 PaxDb:O50061
PRIDE:O50061 EnsemblPlants:AT1G07320.1 GeneID:837243
KEGG:ath:AT1G07320 GeneFarm:65 TAIR:At1g07320 eggNOG:COG0088
HOGENOM:HOG000248767 InParanoid:O50061 KO:K02926 OMA:FDILNAN
PhylomeDB:O50061 ProtClustDB:CLSN2687716 Genevestigator:O50061
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 Uniprot:O50061
Length = 282
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 45/119 (37%), Positives = 67/119 (56%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+P+ +F E G L + ++HR + L +++GT ST T EV G G K
Sbjct: 54 LPILSFEGEKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIK 113
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARA-AEG 218
P+ QK TG AR G+ R P GG + GP+P+ +IK+N+K ++L + ALS+ A AEG
Sbjct: 114 PYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEG 172
>ASPGD|ASPL0000008992 [details] [associations]
symbol:AN6843 species:162425 "Emericella nidulans"
[GO:0005762 "mitochondrial large ribosomal subunit" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 GO:GO:0006412 GO:GO:0005840
EMBL:BN001301 GO:GO:0003735 Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953
HOGENOM:HOG000176814 OMA:TASTKWR EnsemblFungi:CADANIAT00007641
Uniprot:C8V2I4
Length = 287
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 44/107 (41%), Positives = 63/107 (58%)
Query: 113 FMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARH 172
F+ A + +P+RKDI+HR V ++ +QGT STK +V G+ +K + QKGTGRAR
Sbjct: 78 FVEYARNHLMMPLRKDILHRAVVYEGDMTRQGTASTKWRGDVHGSNRKLYAQKGTGRARV 137
Query: 173 GTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
G + P RGG GP PR + +L +K+ +IALS R G+
Sbjct: 138 GDKKSPIRRGGGVAFGPHPRDFSTELPRKIYDQAWRIALSYRYRRGQ 184
>TIGR_CMR|CJE_1874 [details] [associations]
symbol:CJE_1874 "ribosomal protein L4" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
GO:GO:0006412 GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0088 HOGENOM:HOG000248767
KO:K02926 Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 ProtClustDB:PRK05319
HAMAP:MF_01328_B RefSeq:YP_179844.1 ProteinModelPortal:Q5HS91
STRING:Q5HS91 GeneID:3232501 KEGG:cjr:CJE1874 PATRIC:20045580
OMA:ISESIFN BioCyc:CJEJ195099:GJC0-1913-MONOMER Uniprot:Q5HS91
Length = 204
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 41/90 (45%), Positives = 56/90 (62%)
Query: 130 IHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGP 189
++ V+ LA + T TK S+VSG GKKPWRQKG G AR G+ R + GG GP
Sbjct: 31 LYLYVKSYLASLRANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGP 90
Query: 190 -KPRSHAIKLNKKVRRLGLKIALSARAAEG 218
R++ K+NKK +RL L+ AL+ +AA+G
Sbjct: 91 TNERNYFQKVNKKQKRLALERALADKAAKG 120
>WB|WBGene00020717 [details] [associations]
symbol:mrpl-4 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0006412 GO:GO:0040011 GO:GO:0000003 GO:GO:0005840
GO:GO:0003735 eggNOG:COG0088 HOGENOM:HOG000248767
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 GeneTree:ENSGT00390000014512 OMA:VYGLNVY
EMBL:FO081628 PIR:T32225 RefSeq:NP_505181.1
ProteinModelPortal:O17005 SMR:O17005 DIP:DIP-25082N IntAct:O17005
MINT:MINT-1044291 STRING:O17005 PaxDb:O17005
EnsemblMetazoa:T23B12.2 GeneID:179230 KEGG:cel:CELE_T23B12.2
UCSC:T23B12.2 CTD:179230 WormBase:T23B12.2 InParanoid:O17005
NextBio:904478 Uniprot:O17005
Length = 299
Score = 177 (67.4 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 56/167 (33%), Positives = 77/167 (46%)
Query: 50 LKSGLSFL-ASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFN 108
L L FL +SR FS+ + S+ D + + I Q V + +
Sbjct: 2 LSRQLRFLISSRAFSSAVQDVSSTSSGESIDTRRELWRKPENPFIKTPQAWVSNLDTIED 61
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
E G + L D+F R DI+HR + WQ R T +E+ G G+KPW QK TG
Sbjct: 62 EKLGLVDLHPDIFRTSPRIDILHRNLTWQSVYRNVQMTKMLTKAEMPGGGRKPWPQKKTG 121
Query: 169 RARHGTLRGPQF-RGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
RA G++R PQF RGG PR+ L VR GL +AL+ +
Sbjct: 122 RAHVGSIRSPQFIRGGFANGVRGPRTWFYMLPDAVRIQGLCVALTLK 168
>SGD|S000004487 [details] [associations]
symbol:YML6 "Mitochondrial ribosomal protein of the large
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0032543 "mitochondrial translation" evidence=IC] [GO:0003735
"structural constituent of ribosome" evidence=IEA;IDA] [GO:0006412
"translation" evidence=IEA] [GO:0005762 "mitochondrial large
ribosomal subunit" evidence=IDA] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 SGD:S000004487 EMBL:BK006946
GO:GO:0005762 GO:GO:0003735 GO:GO:0032543 EMBL:Z46659
eggNOG:COG0088 Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 HOGENOM:HOG000176814
OrthoDB:EOG41G6DC PIR:S50887 RefSeq:NP_013687.1
ProteinModelPortal:P51998 SMR:P51998 DIP:DIP-6670N IntAct:P51998
MINT:MINT-659020 STRING:P51998 PaxDb:P51998 EnsemblFungi:YML025C
GeneID:854983 KEGG:sce:YML025C CYGD:YML025c OMA:TASTKWR
NextBio:978106 Genevestigator:P51998 GermOnline:YML025C
Uniprot:P51998
Length = 286
Score = 116 (45.9 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 35/122 (28%), Positives = 57/122 (46%)
Query: 100 VIPVTNFFN-EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
++ V +F + E F+ + P+R+DI+ R V ++ R+ G + SE +
Sbjct: 43 LVTVRSFPSLEPLTFVPVPTSTVAAPLRRDILWRAVVYENDNRRVGASNPPGRSENGFSR 102
Query: 159 KKPWRQKGTGRARHGTLRGP-QFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
+K QKG+GRAR G P + GG + P + +L KV + ALS +
Sbjct: 103 RKLMPQKGSGRARVGDANSPTRHNGGRALARTAPNDYTTELPSKVYSMAFNNALSHQYKS 162
Query: 218 GK 219
GK
Sbjct: 163 GK 164
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 251 226 0.00078 113 3 11 22 0.39 33
32 0.41 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 36
No. of states in DFA: 596 (63 KB)
Total size of DFA: 163 KB (2096 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.57u 0.16s 18.73t Elapsed: 00:00:00
Total cpu time: 18.57u 0.16s 18.73t Elapsed: 00:00:00
Start: Fri May 10 15:06:34 2013 End: Fri May 10 15:06:34 2013