AT2G20060 protein (Arabidopsis thaliana)

STRING 9.05

AT2G20060 protein (Arabidopsis thaliana) - STRING network view

This is the evidence view. Different line colors represent the types of evidence for the association.




confidence	evidence	actions	interactive	advanced	more	less	save

Your Input:
	AT2G20060	ribosomal protein L4 family protein; ribosomal protein L4 family protein; FUNCTIONS IN- structural constituent of ribosome; INVOLVED IN- translation; LOCATED IN- ribosome, intracellular, chloroplast, large ribosomal subunit; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Ribosomal protein L4 (InterPro-IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro-IPR013005), Ribosomal protein L4/L1e (InterPro-IPR002136); BEST Arabidopsis thaliana protein match is- RPL4; poly(U) binding / structural constituent of ribosome (TAIR-AT1G07 [...] (300 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT5G23535	KOW domain-containing protein; KOW domain-containing protein; FUNCTIONS IN- structural constitu [...] (159 aa)	•		•	•	•	0.997
	RPL3A	ribosomal protein L3 family protein; ribosomal protein L3 family protein; FUNCTIONS IN- structu [...] (271 aa)	•	•	•	•	•	0.996
	AT3G13120	30S ribosomal protein S10, chloroplast, putative; 30S ribosomal protein S10, chloroplast, putat [...] (191 aa)	•	•	•	•	•	0.996
	AT2G33800	ribosomal protein S5 family protein; ribosomal protein S5 family protein; FUNCTIONS IN- structu [...] (303 aa)	•		•	•	•	0.994
	ATCG00790.1-P	unknown protein; chloroplast gene encoding a ribosomal protein L16, which is a constituent of 5 [...] (135 aa)	•	•	•	•	•	0.993
	RPL2.2	unknown protein; encodes a chloroplast ribosomal protein L2, a constituent of the large subunit [...] (274 aa)	•	•	•	•	•	0.993
	RPL2.1	unknown protein; encodes a chloroplast ribosomal protein L2, a constituent of the large subunit [...] (274 aa)	•	•	•	•	•	0.993
	emb2394	emb2394 (embryo defective 2394); structural constituent of ribosome; embryo defective 2394 (emb [...] (223 aa)	•		•	•	•	0.991
	AT1G48350	ribosomal protein L18 family protein; ribosomal protein L18 family protein; FUNCTIONS IN- struc [...] (170 aa)	•		•	•	•	0.990
	ATCG00800.1-P	unknown protein; encodes a chloroplast ribosomal protein S3, a constituent of the small subunit [...] (218 aa)	•	•	•	•	•	0.990

Views:

Info & Parameters ...

Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:

Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining

required confidence (score):

interactors shown:

or custom value:

or custom limit:

additional (white) nodes

Server load: medium (58%)

Permalink