BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025562
(251 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B6IRQ7|RL4_RHOCS 50S ribosomal protein L4 OS=Rhodospirillum centenum (strain ATCC
51521 / SW) GN=rplD PE=3 SV=1
Length = 206
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/142 (55%), Positives = 93/142 (65%), Gaps = 13/142 (9%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V N NE G + LA +VF +P R+DI+ R+V WQLAKR+QGTH TK ISE++GT KKPW
Sbjct: 5 VKNLNNETVGEIELADEVFGLPTRQDILTRMVLWQLAKRRQGTHKTKGISEIAGTTKKPW 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVSL 222
RQKGTGRAR G+ R PQFRGG + GP RSH L KKVR+L LK ALS +AAEGK+
Sbjct: 65 RQKGTGRARQGSTRSPQFRGGARIFGPVVRSHEHDLTKKVRKLALKTALSTKAAEGKL-- 122
Query: 223 SVSLSLFLRPSFSLSLKNTDTH 244
F L DTH
Sbjct: 123 -----------FVLEAAKADTH 133
>sp|Q5PA59|RL4_ANAMM 50S ribosomal protein L4 OS=Anaplasma marginale (strain St. Maries)
GN=rplD PE=3 SV=1
Length = 208
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/145 (52%), Positives = 96/145 (66%), Gaps = 7/145 (4%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N NE G + L+ +VF V +R+D++ VV WQLAKR+ GTH T+ IS+VSGT K
Sbjct: 3 VNVVNIKNEVVGKVQLSAEVFGVQLRRDVLRDVVTWQLAKRRAGTHKTRCISDVSGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKV 220
P+RQK TGRAR G+LR PQFRGG + GP RSHA LNKKVRRLGLK+ALS + ++ K+
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVVFGPVNRSHAYSLNKKVRRLGLKVALSMKVSDSKL 122
Query: 221 SLSVSLSLFLRPSFSLSLKNTDTHV 245
+ L S L K D HV
Sbjct: 123 -------VVLDDSGLLLEKTADAHV 140
>sp|B9KJ69|RL4_ANAMF 50S ribosomal protein L4 OS=Anaplasma marginale (strain Florida)
GN=rplD PE=3 SV=1
Length = 208
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/145 (52%), Positives = 96/145 (66%), Gaps = 7/145 (4%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N NE G + L+ +VF V +R+D++ VV WQLAKR+ GTH T+ IS+VSGT K
Sbjct: 3 VNVVNIKNEVVGKVQLSAEVFGVQLRRDVLRDVVTWQLAKRRAGTHKTRCISDVSGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKV 220
P+RQK TGRAR G+LR PQFRGG + GP RSHA LNKKVRRLGLK+ALS + ++ K+
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVVFGPVNRSHAYSLNKKVRRLGLKVALSMKVSDSKL 122
Query: 221 SLSVSLSLFLRPSFSLSLKNTDTHV 245
+ L S L K D HV
Sbjct: 123 -------VVLDDSGLLLEKTADAHV 140
>sp|Q2RQW1|RL4_RHORT 50S ribosomal protein L4 OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rplD PE=3 SV=1
Length = 206
Score = 145 bits (365), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/118 (59%), Positives = 88/118 (74%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ VF +P+R D++HR+VRWQLA+RQ GTH TK ISE+SGT KP+
Sbjct: 5 VKTLDGKDAGSIELSDSVFGLPVRTDLLHRMVRWQLARRQAGTHKTKGISEISGTTAKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKV 220
+QKGTG AR G+ R PQFRGG T+ GP RSHA LNKKVR+LGLK ALSA+A G++
Sbjct: 65 KQKGTGHARQGSKRSPQFRGGATIFGPVVRSHAHDLNKKVRKLGLKTALSAKAQAGQL 122
>sp|Q2W2J2|RL4_MAGSA 50S ribosomal protein L4 OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=rplD PE=3 SV=1
Length = 206
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/118 (60%), Positives = 87/118 (73%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V + N+ G + LA ++F VP+R DI+ R V WQLAKRQ G H TKTISE+SGT KKP+
Sbjct: 5 VISLDNQTVGEIELADEIFGVPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTTKKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKV 220
QKG GRAR G+LR QFRGG+T+ GP RSHA L KKVR+L LK ALSA+ A+GK+
Sbjct: 65 AQKGGGRARQGSLRSAQFRGGSTIFGPVVRSHAHDLPKKVRKLALKTALSAKVADGKL 122
>sp|Q2GL58|RL4_ANAPZ 50S ribosomal protein L4 OS=Anaplasma phagocytophilum (strain HZ)
GN=rplD PE=3 SV=1
Length = 208
Score = 141 bits (355), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 90/133 (67%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N NE G + L VF + R+D++ VV WQLAKR+ GTH K IS++SGT K
Sbjct: 3 VNIVNIANEVVGSIDLNPQVFGLEPRRDVLKEVVNWQLAKRRAGTHKAKGISDISGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKV 220
P+RQK TGRAR G+LR PQFRGG + GP PRSH LNKKVRRLGLK+ALS + A K+
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVIFGPVPRSHEYSLNKKVRRLGLKVALSMKVAANKL 122
Query: 221 SLSVSLSLFLRPS 233
+ SL + L+ +
Sbjct: 123 VVLDSLDVDLKKT 135
>sp|Q11HQ3|RL4_MESSB 50S ribosomal protein L4 OS=Mesorhizobium sp. (strain BNC1) GN=rplD
PE=3 SV=1
Length = 206
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 88/128 (68%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ VT +D G + ++ ++F + R+DI+HRVVRWQLAKRQQGTH K +E++ TG K
Sbjct: 3 LKVTTLAGKDAGKVEVSDEIFGLDPREDILHRVVRWQLAKRQQGTHKAKGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKV 220
+RQKGTGRARH + R PQFRGG HGP P SHA L KKVR LGLK ALSA+A +
Sbjct: 63 MYRQKGTGRARHSSARAPQFRGGGKAHGPVPHSHAHDLPKKVRALGLKHALSAKAKSANL 122
Query: 221 SLSVSLSL 228
+ L++
Sbjct: 123 IIVDDLAI 130
>sp|Q68W79|RL4_RICTY 50S ribosomal protein L4 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rplD PE=3 SV=1
Length = 207
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/122 (59%), Positives = 85/122 (69%), Gaps = 1/122 (0%)
Query: 108 NEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKG 166
NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP++QKG
Sbjct: 10 NEEVGEITLNKDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKPFKQKG 69
Query: 167 TGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVSLSVSL 226
TG AR G+LR Q RGG HGPK RSHAIKL KKVR+LGL ALS + A GK+ + SL
Sbjct: 70 TGNARQGSLRSIQMRGGGISHGPKVRSHAIKLPKKVRKLGLIHALSEKCAAGKLLIINSL 129
Query: 227 SL 228
L
Sbjct: 130 KL 131
>sp|Q1RHM2|RL4_RICBR 50S ribosomal protein L4 OS=Rickettsia bellii (strain RML369-C)
GN=rplD PE=3 SV=1
Length = 207
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/127 (57%), Positives = 88/127 (69%), Gaps = 1/127 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ N NE+ G + L D+F V IR DII +VV WQ AK GTH TKT+SEVSGT KKP
Sbjct: 5 ILNLANEEIGEISLNEDIFAVEFIRDDIIKQVVDWQRAKAMAGTHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVS 221
++QKGTG AR G+LR Q RGG +HGP RSHA KL KKVR+LGL ALS + +EGK+
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVIHGPVVRSHATKLPKKVRKLGLIHALSEKFSEGKLL 124
Query: 222 LSVSLSL 228
+ SL L
Sbjct: 125 VIDSLKL 131
>sp|A8GVB5|RL4_RICB8 50S ribosomal protein L4 OS=Rickettsia bellii (strain OSU 85-389)
GN=rplD PE=3 SV=1
Length = 207
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/127 (57%), Positives = 88/127 (69%), Gaps = 1/127 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ N NE+ G + L D+F V IR DII +VV WQ AK GTH TKT+SEVSGT KKP
Sbjct: 5 ILNLANEEIGEISLNEDIFAVEFIRDDIIKQVVDWQRAKAMAGTHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVS 221
++QKGTG AR G+LR Q RGG +HGP RSHA KL KKVR+LGL ALS + +EGK+
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVIHGPVVRSHATKLPKKVRKLGLIHALSEKFSEGKLL 124
Query: 222 LSVSLSL 228
+ SL L
Sbjct: 125 VIDSLKL 131
>sp|Q9ZCQ6|RL4_RICPR 50S ribosomal protein L4 OS=Rickettsia prowazekii (strain Madrid E)
GN=rplD PE=3 SV=1
Length = 207
Score = 134 bits (336), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 72/122 (59%), Positives = 85/122 (69%), Gaps = 1/122 (0%)
Query: 108 NEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKG 166
NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP++QKG
Sbjct: 10 NEEVGEITLNKDIFAVEFIRDDIIKQVIDWQRAKAMFGNHKTKTVSEVSGTTKKPFKQKG 69
Query: 167 TGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVSLSVSL 226
TG AR G+LR Q RGG HGPK RSHAIKL KKVR+LGL ALS + AE K+ + SL
Sbjct: 70 TGNARQGSLRSVQMRGGGISHGPKVRSHAIKLPKKVRKLGLIHALSEKYAEEKLLIIDSL 129
Query: 227 SL 228
L
Sbjct: 130 KL 131
>sp|Q4UMS8|RL4_RICFE 50S ribosomal protein L4 OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=rplD PE=3 SV=1
Length = 207
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 85/122 (69%), Gaps = 1/122 (0%)
Query: 108 NEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKG 166
NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP++QKG
Sbjct: 10 NEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKPFKQKG 69
Query: 167 TGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVSLSVSL 226
TG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGK+ + SL
Sbjct: 70 TGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKFAEGKLLVIDSL 129
Query: 227 SL 228
L
Sbjct: 130 KL 131
>sp|Q5FTY4|RL4_GLUOX 50S ribosomal protein L4 OS=Gluconobacter oxydans (strain 621H)
GN=rplD PE=3 SV=1
Length = 204
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/118 (56%), Positives = 80/118 (67%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G + L ++F V R DI+ RVV WQLAKR+ GTH TK + E+SGT KKP+
Sbjct: 5 IKTLDNGSAGSVALPEEIFAVTPRSDIMARVVHWQLAKRRAGTHRTKGMGEISGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKV 220
RQKGTG AR G+LR PQFR G +HGP R H L KKVRRLGL ALS +AAEGK+
Sbjct: 65 RQKGTGSARQGSLRAPQFRTGGVVHGPVVRDHGYDLPKKVRRLGLICALSQKAAEGKL 122
>sp|A8GT68|RL4_RICRS 50S ribosomal protein L4 OS=Rickettsia rickettsii (strain Sheila
Smith) GN=rplD PE=3 SV=1
Length = 207
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/127 (55%), Positives = 86/127 (67%), Gaps = 1/127 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVS 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGK+
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 LSVSLSL 228
+ SL L
Sbjct: 125 VIDSLKL 131
>sp|B0BUQ9|RL4_RICRO 50S ribosomal protein L4 OS=Rickettsia rickettsii (strain Iowa)
GN=rplD PE=3 SV=1
Length = 207
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/127 (55%), Positives = 86/127 (67%), Gaps = 1/127 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVS 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGK+
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 LSVSLSL 228
+ SL L
Sbjct: 125 VIDSLKL 131
>sp|C4K2H8|RL4_RICPU 50S ribosomal protein L4 OS=Rickettsia peacockii (strain Rustic)
GN=rplD PE=3 SV=1
Length = 207
Score = 132 bits (332), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/127 (55%), Positives = 86/127 (67%), Gaps = 1/127 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVS 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGK+
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 LSVSLSL 228
+ SL L
Sbjct: 125 VIDSLKL 131
>sp|Q92GW7|RL4_RICCN 50S ribosomal protein L4 OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=rplD PE=3 SV=1
Length = 207
Score = 132 bits (332), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/127 (55%), Positives = 86/127 (67%), Gaps = 1/127 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVS 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGK+
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 LSVSLSL 228
+ SL L
Sbjct: 125 VIDSLKL 131
>sp|C3PPA6|RL4_RICAE 50S ribosomal protein L4 OS=Rickettsia africae (strain ESF-5)
GN=rplD PE=3 SV=1
Length = 207
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/122 (57%), Positives = 84/122 (68%), Gaps = 1/122 (0%)
Query: 108 NEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKG 166
NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP++QKG
Sbjct: 10 NEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKPFKQKG 69
Query: 167 TGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVSLSVSL 226
TG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGK+ + SL
Sbjct: 70 TGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLLVIDSL 129
Query: 227 SL 228
L
Sbjct: 130 KL 131
>sp|C6C186|RL4_DESAD 50S ribosomal protein L4 OS=Desulfovibrio salexigens (strain ATCC
14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplD PE=3
SV=1
Length = 206
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 92/128 (71%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I + + ++ G M LA +VF+VP++ +I+H VVR QLA ++QGTH+TKT G G K
Sbjct: 4 ITIYDQTKKEVGSMDLAPEVFEVPVKPEILHLVVRSQLAAKRQGTHATKTRGMKRGGGAK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKV 220
PWRQKGTGRAR G+ R P +RGG T GP+PR ++ K+NKKVRRL LK+AL++R +E K+
Sbjct: 64 PWRQKGTGRARAGSTRSPLWRGGGTTFGPQPRDYSFKVNKKVRRLALKMALTSRLSEEKM 123
Query: 221 SLSVSLSL 228
+ ++ L
Sbjct: 124 MVVKNIDL 131
>sp|A9H3R2|RL4_GLUDA 50S ribosomal protein L4 OS=Gluconacetobacter diazotrophicus
(strain ATCC 49037 / DSM 5601 / PAl5) GN=rplD PE=3 SV=1
Length = 204
Score = 131 bits (329), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/118 (56%), Positives = 79/118 (66%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G VL ++F V R DI+ RVV WQLAKR+ GTH K + EVSGT KKP+
Sbjct: 5 IKTLDNGSAGTAVLPDEIFGVTPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKV 220
RQKGTG AR G+LR PQ+R G +HGP R H L KKVRRLGL ALS +AAEGK+
Sbjct: 65 RQKGTGSARQGSLRAPQYRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKAAEGKL 122
>sp|A8GPE9|RL4_RICAH 50S ribosomal protein L4 OS=Rickettsia akari (strain Hartford)
GN=rplD PE=3 SV=1
Length = 207
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 84/122 (68%), Gaps = 1/122 (0%)
Query: 108 NEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKG 166
NE+ G + L D+F V IR D+I +V+ WQ AK G H TKT+SEVSGT KKP++QKG
Sbjct: 10 NEEVGEISLNEDIFAVEFIRDDVIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKPFKQKG 69
Query: 167 TGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVSLSVSL 226
TG AR G+LR Q RGG HGP+ RSH KL KKVR+LGL ALS + AEG++ + SL
Sbjct: 70 TGNARQGSLRSVQMRGGGVAHGPRVRSHVTKLPKKVRKLGLIHALSEKFAEGRLLVIDSL 129
Query: 227 SL 228
L
Sbjct: 130 KL 131
>sp|A8EZL5|RL4_RICCK 50S ribosomal protein L4 OS=Rickettsia canadensis (strain McKiel)
GN=rplD PE=3 SV=1
Length = 207
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/122 (57%), Positives = 84/122 (68%), Gaps = 1/122 (0%)
Query: 108 NEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKG 166
NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP++QKG
Sbjct: 10 NEEVGEISLNKDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKPFKQKG 69
Query: 167 TGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVSLSVSL 226
TG AR G+LR Q RGG HGP RSHA +L KKVR+LGL ALS + AEGK+ + SL
Sbjct: 70 TGNARQGSLRSVQMRGGGLAHGPIVRSHATQLPKKVRKLGLIHALSEKFAEGKLLVIDSL 129
Query: 227 SL 228
L
Sbjct: 130 KL 131
>sp|P61061|RL4_BDEBA 50S ribosomal protein L4 OS=Bdellovibrio bacteriovorus (strain ATCC
15356 / DSM 50701 / NCIB 9529 / HD100) GN=rplD PE=3 SV=1
Length = 209
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 88/127 (69%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N+ E G + LA DVF+ P++K+++H VV+WQLA R+QGTH TKT VSG GKK
Sbjct: 4 VNVLNWKKEKVGSVELAADVFETPVKKEVLHTVVQWQLAARRQGTHMTKTKGLVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKV 220
P++QKGTG AR G+ R GG T GP+PRS+A L KKVRRLGL +ALS EGK+
Sbjct: 64 PFKQKGTGGARQGSSRSILMPGGGTAFGPQPRSYAFVLPKKVRRLGLSMALSHLQKEGKL 123
Query: 221 SLSVSLS 227
+ S++
Sbjct: 124 FIVDSMA 130
>sp|Q5GSU5|RL4_WOLTR 50S ribosomal protein L4 OS=Wolbachia sp. subsp. Brugia malayi
(strain TRS) GN=rplD PE=3 SV=1
Length = 204
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 86/131 (65%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N N D G L +F V + I+H +VRWQLAKR+ GTH K IS+VSGT KP+
Sbjct: 5 LVNLSNNDVGTTQLNPLIFSVEQKLSILHDIVRWQLAKRRAGTHKVKGISDVSGTTAKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVSL 222
QK TGRAR G+LR PQFRGG + GP RSHA LNKKVR+ GLK+ALS + +V +
Sbjct: 65 SQKRTGRARQGSLRSPQFRGGGVIFGPIVRSHAYSLNKKVRKFGLKVALSLKYLNNQVII 124
Query: 223 SVSLSLFLRPS 233
+L++ ++ +
Sbjct: 125 LNNLNINVKKT 135
>sp|Q5FFU1|RL4_EHRRG 50S ribosomal protein L4 OS=Ehrlichia ruminantium (strain Gardel)
GN=rplD PE=3 SV=1
Length = 205
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/120 (54%), Positives = 82/120 (68%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N +++ G + L +F V R DI+ VV WQL+KR+ G H TKTI +VSGT K
Sbjct: 3 VNVINIESQNIGKIDLNPLIFSVNYRPDILKMVVEWQLSKRRVGAHKTKTIGDVSGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKV 220
P+RQK TGRAR G+LR PQFRGG + GP RSHA LNKKVR LGLK+ALS + + K+
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVIFGPVVRSHAYSLNKKVRNLGLKVALSLKNSCNKL 122
>sp|Q30Z43|RL4_DESDG 50S ribosomal protein L4 OS=Desulfovibrio desulfuricans (strain
G20) GN=rplD PE=3 SV=1
Length = 206
Score = 128 bits (322), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 87/120 (72%), Gaps = 3/120 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+ V +++DK G + LA +VF+V +R +I++ VVR Q A ++ GTHS KT S +SG
Sbjct: 1 MAVVKVYDQDKKETGELTLAPEVFEVEVRPEILNLVVRAQRAAKRAGTHSVKTRSTISGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G+ R P +RGG + GP+PR ++ K+NKKVR+L LK+ALS+R AE
Sbjct: 61 GAKPWRQKGTGRARSGSNRSPVWRGGAVVFGPQPRDYSFKVNKKVRKLALKMALSSRLAE 120
>sp|Q5HAS3|RL4_EHRRW 50S ribosomal protein L4 OS=Ehrlichia ruminantium (strain
Welgevonden) GN=rplD PE=3 SV=1
Length = 205
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 82/120 (68%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N +++ G + L +F V R DI+ VV WQL+KR+ G H TKTI +VSGT K
Sbjct: 3 VNVINIESQNIGKIDLNPLIFSVNYRPDILKMVVEWQLSKRRIGAHKTKTIGDVSGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKV 220
P+RQK TGRAR G+LR PQFRGG + GP R+HA LNKKVR LGLK+ALS + + K+
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVIFGPVVRTHAYSLNKKVRNLGLKVALSLKNSCNKL 122
>sp|Q3YRL0|RL4_EHRCJ 50S ribosomal protein L4 OS=Ehrlichia canis (strain Jake) GN=rplD
PE=3 SV=1
Length = 205
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/120 (51%), Positives = 82/120 (68%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N ++ G + L +F V R DI+ VV WQL+KR+ GTH KTI ++SGT K
Sbjct: 3 VSIINVNSDKIGTIDLNPLIFSVDYRPDILKMVVNWQLSKRRAGTHKAKTIGDISGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKV 220
P+RQK TGRAR G+LR PQFRGG + GP R+HA LNKKVR+LGLK+ALS + + K+
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVIFGPVVRNHAYSLNKKVRKLGLKVALSLKNSCNKL 122
>sp|A0LIJ1|RL4_SYNFM 50S ribosomal protein L4 OS=Syntrophobacter fumaroxidans (strain
DSM 10017 / MPOB) GN=rplD PE=3 SV=1
Length = 207
Score = 127 bits (320), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 92/131 (70%), Gaps = 3/131 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + FN ++ G + L+ VF VP+R ++H VV +QLAKR+ GT TK S+V+G
Sbjct: 1 MPTVDIFNTNRDVVGQLELSDAVFAVPLRPHVLHEVVLYQLAKRRAGTVKTKGRSDVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR GT R P +RGG T+HGP+PR + +++ KKVRRL +K+ALS + +
Sbjct: 61 GKKPWRQKGTGRARAGTSRSPIWRGGGTIHGPQPRDYEMRIPKKVRRLAVKMALSQKLID 120
Query: 218 GKVSLSVSLSL 228
++++ L L
Sbjct: 121 RELTVLDQLQL 131
>sp|C4XLX4|RL4_DESMR 50S ribosomal protein L4 OS=Desulfovibrio magneticus (strain ATCC
700980 / DSM 13731 / RS-1) GN=rplD PE=3 SV=1
Length = 210
Score = 127 bits (319), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 88/122 (72%), Gaps = 3/122 (2%)
Query: 104 TNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
FN+ + G + LA +VF+V ++ +++H VVR QLA ++ GTHS KT + VSG GKK
Sbjct: 4 VKLFNQGCQEIGTVDLAPEVFEVEVQPELLHLVVRAQLAAKRAGTHSVKTRAFVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKV 220
PWRQKGTGRAR G+ R P +RGG +HGP+PR + K+N+KVR+L L++ALSA+ E ++
Sbjct: 64 PWRQKGTGRARAGSTRSPLWRGGAVVHGPQPRDYTFKVNRKVRQLALRMALSAKLVEDQL 123
Query: 221 SL 222
L
Sbjct: 124 VL 125
>sp|A6U860|RL4_SINMW 50S ribosomal protein L4 OS=Sinorhizobium medicae (strain WSM419)
GN=rplD PE=3 SV=1
Length = 206
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/114 (57%), Positives = 79/114 (69%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +D G + L+ +F + R+DII RVVRWQLAKRQQGTH K +EVS TG K
Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKAKGRAEVSRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LGL+ ALSA+
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALGLRHALSAK 116
>sp|A5FZW4|RL4_ACICJ 50S ribosomal protein L4 OS=Acidiphilium cryptum (strain JF-5)
GN=rplD PE=3 SV=1
Length = 216
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 78/122 (63%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I ++ G L + F R DI+ RVV WQLAKR+ GTH K + EVSGT
Sbjct: 1 MQIDISTLDAGSAGKAELPEEYFAATPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTT 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTG AR G+LR PQFR G +HGP R H LNKKVRRLGL ALS + AEG
Sbjct: 61 KKPYRQKGTGNARQGSLRAPQFRTGGAVHGPVVRDHGYSLNKKVRRLGLISALSQKLAEG 120
Query: 219 KV 220
K+
Sbjct: 121 KL 122
>sp|Q92QG9|RL4_RHIME 50S ribosomal protein L4 OS=Rhizobium meliloti (strain 1021)
GN=rplD PE=3 SV=1
Length = 206
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/114 (57%), Positives = 80/114 (70%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +D G + L+ +F + R+DII RVVRWQLAKRQQGTH +K +EVS TG K
Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKSKGRAEVSRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL+ ALSA+
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKIRALGLRHALSAK 116
>sp|Q8UE19|RL4_AGRT5 50S ribosomal protein L4 OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=rplD PE=3 SV=1
Length = 206
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 81/116 (69%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ ++F + R+DI+ R+VRWQLAK+QQGTH TK SEVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKTKNRSEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
K ++QKGTGRARH + R PQFRGG HGP RSHA L KKVR L L+ ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALALRHALSAK 116
>sp|C3MAY1|RL4_RHISN 50S ribosomal protein L4 OS=Rhizobium sp. (strain NGR234) GN=rplD
PE=3 SV=1
Length = 206
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/114 (57%), Positives = 79/114 (69%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +D G + L+ +F + R+DII RVVRWQLAKRQQGTH K +EV+ TG K
Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKAKGRAEVARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LGL+ ALSA+
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALGLRHALSAK 116
>sp|Q0BUP9|RL4_GRABC 50S ribosomal protein L4 OS=Granulibacter bethesdensis (strain ATCC
BAA-1260 / CGDNIH1) GN=rplD PE=3 SV=1
Length = 215
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 77/122 (63%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I + N G L ++F R DI+ RVV WQLA R+ GTH K + EVSGT
Sbjct: 1 MQIEIKTLDNGSAGTAELPDEIFAATPRADIMARVVHWQLACRRAGTHKVKGMGEVSGTT 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTG AR G+LR PQFR G +HGP R H L KKVRRLGL ALS + AEG
Sbjct: 61 KKPYRQKGTGNARQGSLRAPQFRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKQAEG 120
Query: 219 KV 220
K+
Sbjct: 121 KL 122
>sp|P61071|RL4_WOLPM 50S ribosomal protein L4 OS=Wolbachia pipientis wMel GN=rplD PE=3
SV=1
Length = 204
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 86/131 (65%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N N++ G L +F + I+H +VRWQLAKR+ GTH TK IS+VSGT KP+
Sbjct: 5 LVNLSNDNVGAAQLNPLIFSAKQKLSILHDIVRWQLAKRRAGTHKTKGISDVSGTTAKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVSL 222
QK TGRAR G+LR PQFRGG + GP RSH LNKKVR+ GLKIALS + +V +
Sbjct: 65 GQKRTGRARQGSLRSPQFRGGGIIFGPVVRSHTYSLNKKVRKFGLKIALSLKYLNNQVII 124
Query: 223 SVSLSLFLRPS 233
+L++ ++ +
Sbjct: 125 LDNLNIDVKKT 135
>sp|A9IW26|RL4_BART1 50S ribosomal protein L4 OS=Bartonella tribocorum (strain CIP
105476 / IBS 506) GN=rplD PE=3 SV=1
Length = 206
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/117 (54%), Positives = 84/117 (71%), Gaps = 2/117 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +FD+ R+DI+ RVVRWQLA+RQQGTH ++ S+VS T
Sbjct: 2 DLVIKTLD--GHEAGKLKVSESIFDLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVFRSHAHDLPKKIRALGLRLALSAK 116
>sp|Q98N56|RL4_RHILO 50S ribosomal protein L4 OS=Rhizobium loti (strain MAFF303099)
GN=rplD PE=3 SV=1
Length = 206
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 84/128 (65%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L+ ++F + R+DI+ RVVRWQLAK+QQGTH K +E++ TG K
Sbjct: 3 LKITTLGGKDAGKVKLSEEIFGLDPREDILQRVVRWQLAKKQQGTHKAKGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKV 220
++QKGTGRARH + R PQFRGG HGP RSH L K VR LGLK ALSA+A +
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKNVRALGLKHALSAKAKSASI 122
Query: 221 SLSVSLSL 228
+ L L
Sbjct: 123 IVIDELKL 130
>sp|C0R308|RL4_WOLWR 50S ribosomal protein L4 OS=Wolbachia sp. subsp. Drosophila
simulans (strain wRi) GN=rplD PE=3 SV=1
Length = 204
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 86/131 (65%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N N++ G L +F + I+H +VRWQLAKR+ GTH TK IS+VSGT KP+
Sbjct: 5 LVNLSNDNVGTAQLNPLIFSAKQKLSILHDIVRWQLAKRRAGTHKTKGISDVSGTTAKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVSL 222
QK TGRAR G+LR PQFRGG + GP RSH LNKKVR+ GLKIALS + +V +
Sbjct: 65 GQKRTGRARQGSLRSPQFRGGGIIFGPVVRSHTYSLNKKVRKFGLKIALSLKYLNNQVII 124
Query: 223 SVSLSLFLRPS 233
+L++ ++ +
Sbjct: 125 LDNLNIDVKKT 135
>sp|Q2GED8|RL4_NEOSM 50S ribosomal protein L4 OS=Neorickettsia sennetsu (strain
Miyayama) GN=rplD PE=3 SV=1
Length = 214
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 78/117 (66%), Gaps = 6/117 (5%)
Query: 110 DKGFMVLAGDV------FDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWR 163
D G LAG V + P R D++ V+ WQLAKR+ GTH TK ISEVSGT +KP+R
Sbjct: 10 DFGASSLAGSVAVDRALIEAPFRPDLLSLVINWQLAKRRAGTHKTKGISEVSGTTRKPYR 69
Query: 164 QKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKV 220
QKGTGRAR G+LR PQFR G + GP R H +NKKVR L L+ ALS R AEG++
Sbjct: 70 QKGTGRARQGSLRAPQFRKGGIVFGPVVRQHGFSVNKKVRSLALRSALSMRFAEGRL 126
>sp|A1VEB5|RL4_DESVV 50S ribosomal protein L4 OS=Desulfovibrio vulgaris subsp. vulgaris
(strain DP4) GN=rplD PE=3 SV=1
Length = 206
Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 85/117 (72%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ V + ++ G + LA +VF+V +R +I+H VVR Q A + GTH+TKT + VSG G
Sbjct: 3 VVKVYDQNKQEAGEITLAPEVFEVEVRPEILHLVVRAQRAAFRAGTHATKTRAFVSGGGL 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAA 216
KPWRQKGTGRAR G++R P +RGG + GP+PR + K+NKKVR+L L++ALS+R A
Sbjct: 63 KPWRQKGTGRARAGSIRSPLWRGGAIIFGPQPRDYEFKVNKKVRKLALRMALSSRLA 119
>sp|Q72CH9|RL4_DESVH 50S ribosomal protein L4 OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=rplD PE=3
SV=1
Length = 206
Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 85/117 (72%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ V + ++ G + LA +VF+V +R +I+H VVR Q A + GTH+TKT + VSG G
Sbjct: 3 VVKVYDQNKQEAGEITLAPEVFEVEVRPEILHLVVRAQRAAFRAGTHATKTRAFVSGGGL 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAA 216
KPWRQKGTGRAR G++R P +RGG + GP+PR + K+NKKVR+L L++ALS+R A
Sbjct: 63 KPWRQKGTGRARAGSIRSPLWRGGAIIFGPQPRDYEFKVNKKVRKLALRMALSSRLA 119
>sp|Q2GH55|RL4_EHRCR 50S ribosomal protein L4 OS=Ehrlichia chaffeensis (strain Arkansas)
GN=rplD PE=3 SV=1
Length = 205
Score = 124 bits (312), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 80/120 (66%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N ++ G + L +F V R DI+ VV WQL+KR+ GTH KTI ++SGT K
Sbjct: 3 VNIINVNSDRIGTIDLNPLIFSVNYRPDILKMVVDWQLSKRRAGTHKAKTIGDISGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKV 220
P RQK TGRAR G+LR PQFRGG + GP RSHA LNKKVR LGLK+ALS + + K+
Sbjct: 63 PHRQKHTGRARQGSLRSPQFRGGAVIFGPVVRSHAYSLNKKVRNLGLKVALSLKNSCNKL 122
>sp|B1I1I9|RL4_DESAP 50S ribosomal protein L4 OS=Desulforudis audaxviator (strain
MP104C) GN=rplD PE=3 SV=1
Length = 207
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 86/131 (65%), Gaps = 3/131 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN + G + L+ VF P+ ++H VV QLA R+QGTH TKT SEV G
Sbjct: 1 MPTAAVFNIEGQQVGEIELSEAVFGQPVNDAVLHEVVVMQLANRRQGTHDTKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRARHGT+R P +RGG + GP PR ++ ++ KKV+RL LK AL+ +
Sbjct: 61 GRKPWRQKGTGRARHGTIRSPIWRGGGIVFGPHPRDYSYRVPKKVKRLALKSALATKVDA 120
Query: 218 GKVSLSVSLSL 228
G++ + +L L
Sbjct: 121 GRILVLDALEL 131
>sp|P61067|RL4_ONYPE 50S ribosomal protein L4 OS=Onion yellows phytoplasma (strain OY-M)
GN=rplD PE=3 SV=1
Length = 207
Score = 124 bits (310), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 88/131 (67%), Gaps = 3/131 (2%)
Query: 101 IPVTNFFNEDKGFM---VLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P N N+ F+ VLA VFD+ + +++ VV Q A +QGTH+TKT + V+G
Sbjct: 1 MPKINILNQQGDFVSEKVLATTVFDIKPNQQVLYDVVNAQRAAMRQGTHATKTRALVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRARHG++R P +RGG GP PR +++K+N+KVR L LK ALS +A
Sbjct: 61 GKKPWRQKGTGRARHGSIRSPLWRGGGVTFGPSPRDYSVKVNQKVRSLALKSALSLQAKN 120
Query: 218 GKVSLSVSLSL 228
++ + +++L
Sbjct: 121 NQLVVVDNINL 131
>sp|B9JVN8|RL4_AGRVS 50S ribosomal protein L4 OS=Agrobacterium vitis (strain S4 / ATCC
BAA-846) GN=rplD PE=3 SV=1
Length = 206
Score = 124 bits (310), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 79/116 (68%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V D G + L+ +F + R+DII R+VRWQLAK+QQGTH TKT +EVS TG
Sbjct: 1 MELNVKTLEGTDAGTVSLSDAIFGLEPRQDIIARMVRWQLAKKQQGTHKTKTRAEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
K ++QKGTGRARH + R PQFRGG HGP RSH L KKVR L L+ ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALALRHALSAK 116
>sp|B3CN27|RL4_WOLPP 50S ribosomal protein L4 OS=Wolbachia pipientis subsp. Culex
pipiens (strain wPip) GN=rplD PE=3 SV=1
Length = 204
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 86/132 (65%)
Query: 102 PVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + N + G + L +F + I+H +VRWQLAKR+ G H TK IS+VSGT KP
Sbjct: 4 ELVDLSNNNVGSVELNPLIFSAKQKLSILHDIVRWQLAKRRVGAHKTKGISDVSGTTAKP 63
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVS 221
+ QK TGRAR G+LR PQFRGG + GP RSHA LNKKVR+ GLKIALS + +V
Sbjct: 64 YGQKRTGRARQGSLRSPQFRGGGIIFGPVVRSHAYSLNKKVRKFGLKIALSLKYLNNQVV 123
Query: 222 LSVSLSLFLRPS 233
+ SL++ ++ +
Sbjct: 124 VLDSLNVDVKKT 135
>sp|B3QZZ2|RL4_PHYMT 50S ribosomal protein L4 OS=Phytoplasma mali (strain AT) GN=rplD
PE=3 SV=1
Length = 207
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 86/131 (65%), Gaps = 3/131 (2%)
Query: 101 IPVTNFFNEDKGFMV---LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P N N+ F+ L ++F + I K +++ VV Q A +QGTH+TK + VSG
Sbjct: 1 MPKYNLINQKGDFLSQIDLDDEIFGISINKQVLYDVVNAQRASMRQGTHATKNRALVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRARHGT+R P +RGG GP PR +++K+N+KVRRL LK+ALS +
Sbjct: 61 GKKPWRQKGTGRARHGTIRSPLWRGGGVAFGPSPRDYSVKVNQKVRRLALKMALSWKINN 120
Query: 218 GKVSLSVSLSL 228
+ L +++L
Sbjct: 121 KNLILIDNINL 131
>sp|B5ZYT6|RL4_RHILW 50S ribosomal protein L4 OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=rplD PE=3 SV=1
Length = 206
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 78/112 (69%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
+QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL++ALSA+
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRLALSAK 116
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,801,464
Number of Sequences: 539616
Number of extensions: 3828159
Number of successful extensions: 8464
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 7552
Number of HSP's gapped (non-prelim): 818
length of query: 251
length of database: 191,569,459
effective HSP length: 115
effective length of query: 136
effective length of database: 129,513,619
effective search space: 17613852184
effective search space used: 17613852184
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)