Query 025562
Match_columns 251
No_of_seqs 176 out of 1201
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 07:06:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05319 rplD 50S ribosomal pr 100.0 4.7E-52 1E-56 365.0 13.0 144 99-243 1-147 (205)
2 PRK14547 rplD 50S ribosomal pr 100.0 1.7E-51 3.7E-56 379.3 13.3 145 98-242 1-148 (298)
3 CHL00147 rpl4 ribosomal protei 100.0 2.5E-51 5.4E-56 363.4 12.5 143 98-244 6-154 (215)
4 COG0088 RplD Ribosomal protein 100.0 7.6E-48 1.7E-52 341.1 11.3 148 98-247 1-152 (214)
5 PF00573 Ribosomal_L4: Ribosom 100.0 2.9E-48 6.3E-53 337.7 7.5 129 114-243 1-134 (192)
6 PRK14907 rplD 50S ribosomal pr 100.0 9E-48 2E-52 353.6 10.8 131 112-244 102-237 (295)
7 KOG1624 Mitochondrial/chloropl 100.0 5.1E-46 1.1E-50 338.5 12.6 179 56-239 13-194 (290)
8 PRK04042 rpl4lp 50S ribosomal 100.0 4.8E-45 1E-49 330.2 12.4 142 99-247 1-169 (254)
9 TIGR03672 rpl4p_arch 50S ribos 100.0 4.5E-44 9.9E-49 323.4 12.1 141 99-246 1-167 (251)
10 PLN00185 60S ribosomal protein 100.0 6.4E-38 1.4E-42 298.0 12.6 146 99-249 7-186 (405)
11 PTZ00428 60S ribosomal protein 100.0 1.8E-34 4E-39 273.0 12.6 148 97-249 3-181 (381)
12 KOG1475 Ribosomal protein RPL1 99.8 2.6E-20 5.6E-25 172.5 5.3 148 98-249 4-181 (363)
13 PTZ00428 60S ribosomal protein 82.5 0.7 1.5E-05 45.2 1.6 56 156-219 60-131 (381)
14 PHA02324 hypothetical protein 35.8 27 0.00058 24.6 1.7 28 139-166 18-46 (47)
15 TIGR00201 comF comF family pro 24.6 32 0.0007 29.5 0.7 47 195-243 127-180 (190)
16 KOG3062 RNA polymerase II elon 24.1 98 0.0021 29.3 3.8 43 187-229 42-85 (281)
No 1
>PRK05319 rplD 50S ribosomal protein L4; Provisional
Probab=100.00 E-value=4.7e-52 Score=365.00 Aligned_cols=144 Identities=51% Similarity=0.765 Sum_probs=139.1
Q ss_pred eeeEEEccCCCeeeeEEcCccccCCCCchHHHHHHHHHHHHHcccCCcccceeeeecCCCCCccccCCCCcccCCCCCCC
Q 025562 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGP 178 (251)
Q Consensus 99 m~v~V~~i~Ge~~g~ieLp~~VF~~piR~dllh~vV~~q~a~rRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~rsP 178 (251)
|+++|||++|++.|+++||++||+.|+|.||||++|+||++++||||++||+|+||+|+|||||+||||||||+|++++|
T Consensus 1 ~~~~v~~~~g~~~~~i~l~~~vF~~~~r~dll~~~v~~~~~~~Rqgta~tk~r~ev~GsgrK~~~QKGTGrAR~Gs~rsP 80 (205)
T PRK05319 1 MELKVLNLDGKEAGEVELSDAVFGVEPNEALLHQVVVAQLANARQGTHATKTRSEVSGGGKKPWRQKGTGRARQGSIRSP 80 (205)
T ss_pred CeeEEEcCCCCCcceEEcCHHHhCCCccHHHHHHHHHHHHHhcccCcccCCcccccCCCCCCCCCCCCCCccCcCcccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeccCCCCccccccccHHHHHHHHHHHHHHHHhCCCeEEEecccCCCCCchh---hhhcCCcc
Q 025562 179 QFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVSLSVSLSLFLRPSFS---LSLKNTDT 243 (251)
Q Consensus 179 ~~rGGG~afgPkPR~~~~klNKK~rrlAlrsALSaK~~qg~L~VVd~l~~~~~pkTk---~~lk~~~~ 243 (251)
+|||||+||||+||+|++|||||+|++|+++|||+++++++|+|||+|.+ +.|||| ..|+++|.
T Consensus 81 ~~rGGg~afgpkpr~~~~klnkK~~~lAl~~aLs~k~~~~~l~Vvd~~~~-~~~KTk~~~~~l~~lg~ 147 (205)
T PRK05319 81 QWRGGGVVFGPKPRDYSQKLNKKVRRLALRSALSEKAREGRLVVVDDLSL-EAPKTKELAAKLKNLGL 147 (205)
T ss_pred cccCCeeeCCCCccchhhhcCHHHHHHHHHHHHHHHHhcCCeEEEecccc-CCCCHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999976 889999 56677664
No 2
>PRK14547 rplD 50S ribosomal protein L4; Provisional
Probab=100.00 E-value=1.7e-51 Score=379.32 Aligned_cols=145 Identities=44% Similarity=0.626 Sum_probs=138.2
Q ss_pred ceeeEEEccCCCeeeeEEcCccccCCCCchHHHHHHHHHHHHHcccCCcccceeeeecCCCCCccccCCCCcccCCCCCC
Q 025562 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRG 177 (251)
Q Consensus 98 ~m~v~V~~i~Ge~~g~ieLp~~VF~~piR~dllh~vV~~q~a~rRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~rs 177 (251)
||+++|||++|+..|+|+||++||+.++|.||||++|+||++++||||++||+|+||+|+|||||+||||||||+|++|+
T Consensus 1 M~~~~v~~~~g~~~g~ieL~~~vF~~~~r~dllh~vv~~q~a~~Rqgt~~tKtRaEV~G~GkKP~rQKGTGrAR~Gs~rs 80 (298)
T PRK14547 1 MATCDVLDWQGKKVGSAELPLKVFDVETNIPLIHQVVVAQMAAARQGTHHTKTRAEVRGGGKKPWRQKGTGRARQGSIRA 80 (298)
T ss_pred CceeEEeccCCCCcceEECCHHHhCCCccHHHHHHHHHHHHHhhhcCCCCCCceeeccCCCCCccCCCCCcccCcCCccC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeccCCCCccccccccHHHHHHHHHHHHHHHHhCCCeEEEecccCCCCCchh---hhhcCCc
Q 025562 178 PQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVSLSVSLSLFLRPSFS---LSLKNTD 242 (251)
Q Consensus 178 P~~rGGG~afgPkPR~~~~klNKK~rrlAlrsALSaK~~qg~L~VVd~l~~~~~pkTk---~~lk~~~ 242 (251)
|+|||||++|||+||+|++|||||+|++||++|||+++++++|+|||+|..++.|||| .+|++++
T Consensus 81 P~wrGGGvafGPkpR~y~~klNKK~rrlAlrsALS~k~~~~~liVVd~~~~~~~~KTK~~~~~L~~l~ 148 (298)
T PRK14547 81 PQWRGGGTVHGPRPREYNQRTPKKMRQAALRGALSDRARDNRLIVVESLQDGDPPSTKAVAQALSVME 148 (298)
T ss_pred CceeCCeeecCCCCchhhhhcCHHHHHHHHHHHHHHHHhcCCEEEEeCccccCCcCHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999634899999 4455554
No 3
>CHL00147 rpl4 ribosomal protein L4; Validated
Probab=100.00 E-value=2.5e-51 Score=363.40 Aligned_cols=143 Identities=37% Similarity=0.591 Sum_probs=134.6
Q ss_pred ceeeEEEccCCCe-eeeEEcCccccCCCCchHHHHHHHHHHHHHcccCCcccceeeeecCCCCCccccCCCCcccCCCCC
Q 025562 98 DLVIPVTNFFNED-KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLR 176 (251)
Q Consensus 98 ~m~v~V~~i~Ge~-~g~ieLp~~VF~~piR~dllh~vV~~q~a~rRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~r 176 (251)
-++++|+|++|+. .|+++|+++|| .+++.||||++|+||++++|||||+||+|+||+||||||||||||||||+||+|
T Consensus 6 ~~~~~v~~~~g~~~~~~~~l~~~vf-~~~~~~ll~~~v~~~~a~~R~gt~~tKtR~eV~G~grKp~~QKGTGrAR~Gs~r 84 (215)
T CHL00147 6 FLNYPVIDLTGKEKSETIKLKLNVL-EKSGNYLLHRALVRQNNNQRQGTASTKTRSEVRGGGRKPWKQKGTGRARAGSNR 84 (215)
T ss_pred eeeEEEEccCCCeecceEEeCHHHh-CCchHhHHHHHHHHHHHHHhhcccccCccccccCCCCCCcccCCCCccCCCCCc
Confidence 3689999999999 89999999999 557799999999999999999999999999999999999999999999999999
Q ss_pred CCccccceeccCCCCccccccccHHHHHHHHHHHHHHHHhCCCeEEEeccc--CCCCCchh---hhhcCCccc
Q 025562 177 GPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVSLSVSLS--LFLRPSFS---LSLKNTDTH 244 (251)
Q Consensus 177 sP~~rGGG~afgPkPR~~~~klNKK~rrlAlrsALSaK~~qg~L~VVd~l~--~~~~pkTk---~~lk~~~~~ 244 (251)
+|+|||||++|||+||+|+++||||+|++||++|||++. ++|+|||+|. + ++|||| ..|++++..
T Consensus 85 sP~~rgGG~afgP~pR~y~~klnKKvrrlAl~sALS~k~--~~l~VVd~~~~~~-~~~KTK~~~~~L~~l~~~ 154 (215)
T CHL00147 85 SPLWKGGGVIFGPKPKTYSNKLNKKERRLALRTLLYNKS--NNITVVENFESSI-TNPKTKAFINLLKKLNIN 154 (215)
T ss_pred CCcccCCEeecCCCCcchhhhcCHHHHHHHHHHHHHHhh--CCeEEEccccccc-CCCCHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999984 5899999997 5 889999 677777754
No 4
>COG0088 RplD Ribosomal protein L4 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.6e-48 Score=341.09 Aligned_cols=148 Identities=49% Similarity=0.688 Sum_probs=140.3
Q ss_pred ceeeEEEccCCCeeeeEEcCccccCCCCchHHHHHHHHHHHHHcccCCcccceeeeecCCCCCccccCCCCcccCCCCCC
Q 025562 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRG 177 (251)
Q Consensus 98 ~m~v~V~~i~Ge~~g~ieLp~~VF~~piR~dllh~vV~~q~a~rRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~rs 177 (251)
||+++|||++|++.|++++++.||+.+.+.||||++|+||++++|||||++|+|+||+|+|+|||+|||||+||+|++++
T Consensus 1 m~k~~v~~~~G~~~g~~~~~~~vf~~~~~~dli~~av~a~~a~~RQgt~~~k~rgevs~~g~Kp~~QkgtgraR~gs~rs 80 (214)
T COG0088 1 MMKLKVYDLDGEEVGEVELLPEVFGPERNEDLIHRAVLAQLANRRQGTHSTKTRGEVSGGGKKPWGQKGTGRARQGSIRS 80 (214)
T ss_pred CCcceEeCCCCCCccccccChhhccCCchHHHHHHHHHHHHHhhhccCCCCCCcccccccCcCCCCCCcCCcCCCCCCCC
Confidence 68999999999999999999899999988999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeccCCCC-ccccccccHHHHHHHHHHHHHHHHhCCCeEEEecccCCCCCchh---hhhcCCcccccc
Q 025562 178 PQFRGGTTMHGPKP-RSHAIKLNKKVRRLGLKIALSARAAEGKVSLSVSLSLFLRPSFS---LSLKNTDTHVHI 247 (251)
Q Consensus 178 P~~rGGG~afgPkP-R~~~~klNKK~rrlAlrsALSaK~~qg~L~VVd~l~~~~~pkTk---~~lk~~~~~~~~ 247 (251)
|+|||||++|||+| |||+++||||||++||+||||+++++|+|+++|++.+.+.|||| ..||+ +|.|+
T Consensus 81 P~~rGGg~a~gPkp~r~~~~klnkK~rrlAl~sAls~ka~~~~lv~~~~~~~~~~~kTK~~~~~lk~--l~~~~ 152 (214)
T COG0088 81 PQWRGGGVAHGPKPERDYSQKLNKKERRLALRSALSAKARAGKLVVVRGHVFEDAPKTKELVEFLKK--LGLDV 152 (214)
T ss_pred CeeecCccccCCCCccchhhhcCHHHHHHHHHHHHHHhccCCCEEEEecccccCCccHHHHHHHHHH--hhhhh
Confidence 99999999999999 99999999999999999999999999999999999873399999 77777 55444
No 5
>PF00573 Ribosomal_L4: Ribosomal protein L4/L1 family; InterPro: IPR002136 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes ribosomal L4/L1 from eukaryotes and plants and L4 from bacteria. L4 from yeast has been shown to bind rRNA []. These proteins have 246 (plant) to 427 (human) amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZR_D 1VSA_D 3D5D_F 3MS1_E 3F1F_F 3PYO_E 3MRZ_E 3F1H_F 3PYR_E 1VSP_D ....
Probab=100.00 E-value=2.9e-48 Score=337.66 Aligned_cols=129 Identities=58% Similarity=0.914 Sum_probs=121.5
Q ss_pred EEcCccccCCCCchHHHHHHHHHHHHHcccCCcccceeeeecCCCCCccccCCCCcccCCCCCCCccccceeccCCCC-c
Q 025562 114 MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKP-R 192 (251)
Q Consensus 114 ieLp~~VF~~piR~dllh~vV~~q~a~rRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~rsP~~rGGG~afgPkP-R 192 (251)
||||++||+.|+|.||||++|+||++++||||++||+|+||+|+|||||+||||||||+|++++|+|+|||++|||+| |
T Consensus 1 i~L~~~vF~~~~r~~llh~~v~~~~~~~Rqgt~~tktr~ev~g~grKp~~QKGTGrAR~Gs~rsP~~rgGg~afgPkp~r 80 (192)
T PF00573_consen 1 IELSPDVFNVPVRPDLLHRAVVWQLANRRQGTASTKTRSEVSGSGRKPWPQKGTGRARQGSIRSPQWRGGGVAFGPKPPR 80 (192)
T ss_dssp -ES-CGGGGSSTSHHHHHHHHHHHHHHTSSBT-SSSTSTTSSSSSSSSSSSSSSSSSSSSSCTSTTSTTSSBSSSSSSTS
T ss_pred CCCCHHHhCCCCcHHHHHHHHHHHHHhccCCccCCccceEEecccCcccCCCCCcccccCccccceeeccEEecCCcccc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cccccccHHHHHHHHHHHHHHHHhCCCeEEEeccc-CCCCCchh---hhhcCCcc
Q 025562 193 SHAIKLNKKVRRLGLKIALSARAAEGKVSLSVSLS-LFLRPSFS---LSLKNTDT 243 (251)
Q Consensus 193 ~~~~klNKK~rrlAlrsALSaK~~qg~L~VVd~l~-~~~~pkTk---~~lk~~~~ 243 (251)
+|+++||||+|++||++|||+|+++|+|+|||+|+ + +.|||| ..|++++.
T Consensus 81 ~~~~klnkK~r~lAl~~aLs~k~~~~~l~vvd~~~~~-~~~kTk~~~~~L~~~~~ 134 (192)
T PF00573_consen 81 DYSYKLNKKVRRLALRSALSAKAAEGNLIVVDNFSPL-EEPKTKDLVKLLKKLGL 134 (192)
T ss_dssp BCSHHHHHHHHHHHHHHHHHHHHHTTHHHHCTSCSSS-SSSSHHHHHHHHHHTTT
T ss_pred cceecCChHHHHHHHHHHHHHhhcccceEEeeccccc-cccCHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999997 5 889999 56666665
No 6
>PRK14907 rplD 50S ribosomal protein L4; Provisional
Probab=100.00 E-value=9e-48 Score=353.64 Aligned_cols=131 Identities=42% Similarity=0.570 Sum_probs=124.4
Q ss_pred eeEEcCccccCCC-CchHHHHHHHHHHHHHcccCCcccceeeeecCCCCCccccCCCCcccCCCCCCCccccceeccCCC
Q 025562 112 GFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK 190 (251)
Q Consensus 112 g~ieLp~~VF~~p-iR~dllh~vV~~q~a~rRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~rsP~~rGGG~afgPk 190 (251)
..++|+++||+.+ ++.++||++|+||++++|||||+||+|+||+|+|||||||||||||||||+|+|+|||||++|||+
T Consensus 102 ~~ieL~~~vF~~e~~~~~llh~~V~~q~A~~RqGT~~TKtRsEVsGggkKPwrQKGTGRAR~GS~RSP~wrGGGvaFGPk 181 (295)
T PRK14907 102 NTSKLPKKLFASEKIYSQAIFDTILSERASRRQGTHKVKTRAEVSGTGKKPWRQKGTGRARAGSTRSPIFVGGGRAFGPT 181 (295)
T ss_pred ceEEeCHHHhCCCccchhHHHHHHHHHHHHhccccccccchhhccCCCCCCcccCCCCccCCCCCcCCcccCCeeecCCC
Confidence 4699999999999 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-ccccccccHHHHHHHHHHHHHHHHhCCCeEEEecccCCCCCchh---hhhcCCccc
Q 025562 191 P-RSHAIKLNKKVRRLGLKIALSARAAEGKVSLSVSLSLFLRPSFS---LSLKNTDTH 244 (251)
Q Consensus 191 P-R~~~~klNKK~rrlAlrsALSaK~~qg~L~VVd~l~~~~~pkTk---~~lk~~~~~ 244 (251)
| |+|+++||+|+|++||++|||+++++ +|+|||+|.+ +.|||| .+|+++|..
T Consensus 182 P~RdY~~KLNKKvRrLALrsALS~ka~~-~LvVVd~~~l-e~~KTK~l~~~L~~lgl~ 237 (295)
T PRK14907 182 PERNYKLKVNKKVRFNAFVSALTLLANS-KAVLVDDFKL-EKISTKDLIKKLTKLKIN 237 (295)
T ss_pred CccchhhhcCHHHHHHHHHHHHHHhccC-CEEEEecccC-CCCCHHHHHHHHHHcCcc
Confidence 8 99999999999999999999999976 7999999986 889999 667777763
No 7
>KOG1624 consensus Mitochondrial/chloroplast ribosomal protein L4 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.1e-46 Score=338.53 Aligned_cols=179 Identities=45% Similarity=0.708 Sum_probs=158.8
Q ss_pred hhhhccccccccCCCCCCCCCCCccccccccCCCccccCCC--cceeeEEEccCCCeeeeEEcCccccCCCCchHHHHHH
Q 025562 56 FLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLH--QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRV 133 (251)
Q Consensus 56 ~~~~r~~~~~~~~~~~~~~~~P~~l~~~~t~~~~~~~~g~~--~~m~v~V~~i~Ge~~g~ieLp~~VF~~piR~dllh~v 133 (251)
+...|.++++..++.. .+++. +-...+.++++.+..+ +.+.+++-.+++|++|.++||+++|.+++|.||||++
T Consensus 13 ~ss~~~l~ss~~~~~~---~~~s~-l~~~~~~~p~~p~~~~p~qa~v~~~~~~e~E~~gl~~l~~dvf~~~~RrDIlhra 88 (290)
T KOG1624|consen 13 FSSKRNLVSSTQSPPE---QITSA-LHKESTLKPELPVSIPPKQAWVEPLDFFELEKVGLVDLHPDVFAEPPRRDILHRA 88 (290)
T ss_pred HHHHHHHHhhccCCcc---ccccc-cccccccCcCCCCCcChhhheeeeccccccccceeeecChhhhccchHHHHHHHH
Confidence 3455667777654432 55665 4455666666666666 7888899999999999999999999999999999999
Q ss_pred HHHHHHHcccCCcccceeeeecCCCCCccccCCCCcccCCCCCCCccccceeccCCC-CccccccccHHHHHHHHHHHHH
Q 025562 134 VRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALS 212 (251)
Q Consensus 134 V~~q~a~rRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~rsP~~rGGG~afgPk-PR~~~~klNKK~rrlAlrsALS 212 (251)
|+||++|+|+||++||||+||+|+|||||+||||||||+|+.++|+++|||++|||+ ||+|++|||+|+|.+||++|||
T Consensus 89 v~wq~~nrrvgtastktRaEv~ggGrKp~~QKgtGrAr~Gs~rsP~r~gGg~~~gpr~P~d~~~~Lp~kvr~lgl~~ALS 168 (290)
T KOG1624|consen 89 VVWQLDNRRVGTASTKTRAEVRGGGRKPWPQKGTGRARVGSLRSPQRRGGGVAHGPRGPRDYSYKLPSKVRSLGLKIALS 168 (290)
T ss_pred HHHhhcccccccccCCccccccCCCCCcCcccCCCcccccCccCcccCCCccccCCCCCcchhhhccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHhCCCeEEEecccCCCCCchhhhhc
Q 025562 213 ARAAEGKVSLSVSLSLFLRPSFSLSLK 239 (251)
Q Consensus 213 aK~~qg~L~VVd~l~~~~~pkTk~~lk 239 (251)
++++|++|+|+|++.+ ..||+|+.+.
T Consensus 169 ~~~a~~~l~I~d~~~L-~t~~pk~~~~ 194 (290)
T KOG1624|consen 169 AKLAQDDLHIVDELGL-PTGKPKYLLN 194 (290)
T ss_pred HHHhCCceEEecccCC-CCCCcHHHHH
Confidence 9999999999999985 7888885543
No 8
>PRK04042 rpl4lp 50S ribosomal protein L4P; Provisional
Probab=100.00 E-value=4.8e-45 Score=330.24 Aligned_cols=142 Identities=29% Similarity=0.335 Sum_probs=134.6
Q ss_pred eeeEEEccCCCeeeeEEcCccccCCCCchHHHHHHHHHHHHHcccCC-----cccceeeeecCCCC---CccccCCCCcc
Q 025562 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGT-----HSTKTISEVSGTGK---KPWRQKGTGRA 170 (251)
Q Consensus 99 m~v~V~~i~Ge~~g~ieLp~~VF~~piR~dllh~vV~~q~a~rRqGt-----a~tKtRaEV~GsGr---Kp~rQKGTGrA 170 (251)
|+++|||++|+..++++||+ ||+.++|.|+||++|+||++|+|||| |.||||+||||+|| |||||||||+|
T Consensus 1 ~~v~v~~~~g~~~g~i~L~~-vF~~~~~~~lv~~vv~~~~an~Rqgt~~~~ta~tKtraev~G~Gr~~~Kp~rQKGTGrA 79 (254)
T PRK04042 1 MKAKVYDLDGEVVGEIELPA-VFEEPVRPDLIRRAVLAAQTARLQPKGRDPLAGKRTSAESWGSGRGIARVPRLKGGSRA 79 (254)
T ss_pred CeeEEEcCCCCCcceEehhH-hhCCCCcHHHHHHHHHHHHHhccCCCCCCccccCccceeEcCCCCCcCcCCccCCCCCc
Confidence 68999999999999999995 99999999999999999999999994 88999999999999 99999999999
Q ss_pred cCCCCCCCccccceeccCCCC-ccccccccHHHHHHHHHHHHHHHHhCC---------------CeEEEecccCCCCCch
Q 025562 171 RHGTLRGPQFRGGTTMHGPKP-RSHAIKLNKKVRRLGLKIALSARAAEG---------------KVSLSVSLSLFLRPSF 234 (251)
Q Consensus 171 R~Gs~rsP~~rGGG~afgPkP-R~~~~klNKK~rrlAlrsALSaK~~qg---------------~L~VVd~l~~~~~pkT 234 (251)
| ++|+|||||++|||+| |+|+++||||+|++|+++|||+++.++ +|+|+|+|+ +.|||
T Consensus 80 r----rsP~~rGGgv~fgPkp~R~y~~klnkK~rrlAlrsALs~k~~~~lv~~~~~~~~~~~e~~lvvvd~~~--~~~KT 153 (254)
T PRK04042 80 A----FVPQAVGGRRAHPPKVEKDLHEKINKKERRLAIRSAIAATANPELVKARGHVFEGVPELPLVVVDDFE--SLKKT 153 (254)
T ss_pred c----ccCccCcCCeeCCCCCCcccccccCHHHHHHHHHHHHHHhhhhhhhhhcCccccCCCccCEEEEcccc--cccCH
Confidence 8 9999999999999999 999999999999999999999999985 899999996 78999
Q ss_pred h---hhhcCCcccccc
Q 025562 235 S---LSLKNTDTHVHI 247 (251)
Q Consensus 235 k---~~lk~~~~~~~~ 247 (251)
| ..||+++++.|+
T Consensus 154 K~~~~~Lk~lg~~~~~ 169 (254)
T PRK04042 154 KEVRELLEKLGLYDDV 169 (254)
T ss_pred HHHHHHHHHcCCcccc
Confidence 9 788999987653
No 9
>TIGR03672 rpl4p_arch 50S ribosomal protein L4P. One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.
Probab=100.00 E-value=4.5e-44 Score=323.40 Aligned_cols=141 Identities=30% Similarity=0.346 Sum_probs=133.4
Q ss_pred eeeEEEccCCCeeeeEEcCccccCCCCchHHHHHHHHHHHHHcccCC-----cccceeeeecCCCC---CccccCCCCcc
Q 025562 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGT-----HSTKTISEVSGTGK---KPWRQKGTGRA 170 (251)
Q Consensus 99 m~v~V~~i~Ge~~g~ieLp~~VF~~piR~dllh~vV~~q~a~rRqGt-----a~tKtRaEV~GsGr---Kp~rQKGTGrA 170 (251)
|+++|||++|+..++++|| +||+.|+|.|+||++|+||++|+|||| |.||||+||||+|| |||||||||+|
T Consensus 1 m~~~v~~~~g~~~~~i~l~-~vF~~~~~~~lv~~vv~~~~an~Rqgt~~~~~a~tKtraev~G~Grg~aKp~rQKGTGrA 79 (251)
T TIGR03672 1 MKAKVYDLDGEVVGEIELP-AVFEEPVRPDLIKRAVLAAQTNRLQPYGADPYAGKRTSAESWGSGRGIARVPRIKGGSRA 79 (251)
T ss_pred CceEEEccCCCCcceEehH-HhhCCCccHHHHHHHHHHHHHhccCCCCCCcccCcccceeEccCCCCcCCCCccCCCCcc
Confidence 6899999999999999999 599999999999999999999999999 56999999999999 99999999999
Q ss_pred cCCCCCCCccccceeccCCCC-ccccccccHHHHHHHHHHHHHHHHhCC--------------CeEEEecccCCCCCchh
Q 025562 171 RHGTLRGPQFRGGTTMHGPKP-RSHAIKLNKKVRRLGLKIALSARAAEG--------------KVSLSVSLSLFLRPSFS 235 (251)
Q Consensus 171 R~Gs~rsP~~rGGG~afgPkP-R~~~~klNKK~rrlAlrsALSaK~~qg--------------~L~VVd~l~~~~~pkTk 235 (251)
.++|+|||||++|||+| |+|+++||||+|++|+++|||+++.++ +|+|||+|+ +.||||
T Consensus 80 ----~rsP~~rGGGv~fgPkp~R~y~~klNkK~rrlAl~sALs~k~~~~lv~~~~~~~~~~e~~lvVvd~~~--~~~KTK 153 (251)
T TIGR03672 80 ----ARVPQAVGGRRAHPPKVEKDLHEKINKKERRLAIRSAIAATADPELVKARGHVFEGDELPIVVVDDFE--SLKKTK 153 (251)
T ss_pred ----eecCccCcCCeeCCCCCCcccceecCHHHHHHHHHHHHHHhcchhhhhhcccccccccccEEEEeCCC--CCCCHH
Confidence 69999999999999999 999999999999999999999999998 899999996 789998
Q ss_pred ---hhhcCCccccc
Q 025562 236 ---LSLKNTDTHVH 246 (251)
Q Consensus 236 ---~~lk~~~~~~~ 246 (251)
.+|++++++.|
T Consensus 154 ~~~~~Lk~l~~~~~ 167 (251)
T TIGR03672 154 EVRELLEALGVYDD 167 (251)
T ss_pred HHHHHHHHcCCccc
Confidence 77888887643
No 10
>PLN00185 60S ribosomal protein L4-1; Provisional
Probab=100.00 E-value=6.4e-38 Score=298.03 Aligned_cols=146 Identities=25% Similarity=0.294 Sum_probs=132.1
Q ss_pred eeeEEEccCC----CeeeeEEcCccccCCCCchHHHHHHHHHHHHHcccCCccc-----ceeeeecCCCCCcc---ccC-
Q 025562 99 LVIPVTNFFN----EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHST-----KTISEVSGTGKKPW---RQK- 165 (251)
Q Consensus 99 m~v~V~~i~G----e~~g~ieLp~~VF~~piR~dllh~vV~~q~a~rRqGta~t-----KtRaEV~GsGrKp~---rQK- 165 (251)
..++|||++| +..++|+|| +||+.|+|+||||+||+++++|+||+|+.+ +|++|+||+|||+| |||
T Consensus 7 p~v~V~~~~g~~~~~~~~~v~Lp-~VF~~piR~dlv~~v~~~~~~n~RQp~~~~~~AG~qtsAeswGtGR~vaRiPR~kg 85 (405)
T PLN00185 7 PLVSVQSLDGDMATDKSATVALP-DVMTAPIRPDIVNFVHTNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPG 85 (405)
T ss_pred CeeEEEcCCCCccccccceeehH-HHhCCCCCHHHHHHHHHHHHHhccCCCCCCcccCCcceeeecCCCCCceecccccC
Confidence 4589999999 668999999 999999999999999999999999999987 99999999999999 999
Q ss_pred -CCCcccCCCCCCCccccceeccCCCC--ccccccccHHHHHHHHHHHHHHHHh------CC---------CeEEEeccc
Q 025562 166 -GTGRARHGTLRGPQFRGGTTMHGPKP--RSHAIKLNKKVRRLGLKIALSARAA------EG---------KVSLSVSLS 227 (251)
Q Consensus 166 -GTGrAR~Gs~rsP~~rGGG~afgPkP--R~~~~klNKK~rrlAlrsALSaK~~------qg---------~L~VVd~l~ 227 (251)
||||||||++ |+|++||++|||+| |+|+++||+|+|++|++||||+++. .| .| ||||+.
T Consensus 86 gGT~RAgqGa~--~~~~rGGr~FgP~p~~R~~~~KvNkK~rRlAl~SALAa~a~~~lV~arGH~i~~v~e~pL-VV~d~~ 162 (405)
T PLN00185 86 GGTHRAGQGAF--GNMCRGGRMFAPTKTWRRWHRKVNVNQKRYAVVSALAASAVPSLVMARGHKIENVPEVPL-VVSDSA 162 (405)
T ss_pred CCCCcCCccCc--CCcCCCCeeCCCCCCccccccccCHHHHHHHHHHHHHhhccchhhhcccccccccccCCE-EEEeCc
Confidence 8999999988 99999999999999 9999999999999999999999992 33 45 555553
Q ss_pred CCCCCchh---hhhcCCcccccccc
Q 025562 228 LFLRPSFS---LSLKNTDTHVHIVS 249 (251)
Q Consensus 228 ~~~~pkTk---~~lk~~~~~~~~~~ 249 (251)
. +.+||| .+||++|+|.||.+
T Consensus 163 e-~~~KTK~av~~Lk~lg~~~d~~k 186 (405)
T PLN00185 163 E-SIEKTSAAIKILKQIGAYADVEK 186 (405)
T ss_pred c-CCcCHHHHHHHHHHcCCcccchh
Confidence 3 679999 78999999988754
No 11
>PTZ00428 60S ribosomal protein L4; Provisional
Probab=100.00 E-value=1.8e-34 Score=273.04 Aligned_cols=148 Identities=25% Similarity=0.270 Sum_probs=125.9
Q ss_pred cceeeEEEccCC-CeeeeEEcCccccCCCCchHHHHHHHHHHHHHcccCCccc-----ceeeeecCCCCCcc---ccC--
Q 025562 97 QDLVIPVTNFFN-EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHST-----KTISEVSGTGKKPW---RQK-- 165 (251)
Q Consensus 97 ~~m~v~V~~i~G-e~~g~ieLp~~VF~~piR~dllh~vV~~q~a~rRqGta~t-----KtRaEV~GsGrKp~---rQK-- 165 (251)
..++++|||++| +..++++|| +||+.|+|+||||+||+++++|+||||+.+ ++++|+||+||+++ |||
T Consensus 3 ~r~~v~V~~~~g~~~~~~v~Lp-~VF~~pir~dlV~~vv~~~~aN~RQgta~s~~ag~~tsakswGTGRA~aripR~kg~ 81 (381)
T PTZ00428 3 ARPVVSVYSASDKSVVGTVPLP-AVFTAPIRPDLVQFVHTNMAKNRRQAYAVKPLAGMQHSAESWGTGRAVARIPRVSGG 81 (381)
T ss_pred CCCeeEEEcCCCCcccceEehH-HhhCCCCcHHHHHHHHHHHHHhccCCCCcCCCCCCCCCceecCCCCCccccccccCC
Confidence 357899999998 668999999 899999999999999999999999999987 77888888888888 788
Q ss_pred CCCcccCCCCCCCccccceeccCCCC--ccccccccHHHHHHHHHHHHHHHHh---------------CCCeEEEecccC
Q 025562 166 GTGRARHGTLRGPQFRGGTTMHGPKP--RSHAIKLNKKVRRLGLKIALSARAA---------------EGKVSLSVSLSL 228 (251)
Q Consensus 166 GTGrAR~Gs~rsP~~rGGG~afgPkP--R~~~~klNKK~rrlAlrsALSaK~~---------------qg~L~VVd~l~~ 228 (251)
||+||+||++ +|+|+| |++|||+| |+|+++||+|+|++|++||||+++. ++.|+ |||+ +
T Consensus 82 GT~Rs~qGa~-~n~~rG-G~~FgP~~~~R~~~~KvNkK~rR~Al~SALaa~a~~~lv~argh~i~~v~e~plV-V~d~-~ 157 (381)
T PTZ00428 82 GTHRSGQGAF-GNMCRG-GRMFAPTKTWRRWHRKVNLNQKRHAVASALAASGVPALVMARGHRISNVPEVPLV-VSDS-V 157 (381)
T ss_pred CCCcCccccc-CCcCCC-ceEcCCCCCccccccccCHHHHHHHHHHHHHhhccchhhhcccccccccccCCEE-EEcC-c
Confidence 7778888877 555555 55999999 9999999999999999999999973 44454 5555 3
Q ss_pred CCCCchh---hhhcCCcccccccc
Q 025562 229 FLRPSFS---LSLKNTDTHVHIVS 249 (251)
Q Consensus 229 ~~~pkTk---~~lk~~~~~~~~~~ 249 (251)
...+||| .+||++++|.||.+
T Consensus 158 e~~~KTK~av~~Lk~lg~~~d~~k 181 (381)
T PTZ00428 158 ESYEKTKEAVAFLKALGAFDDVNR 181 (381)
T ss_pred CCCCCHHHHHHHHHHcCCcccchh
Confidence 3458999 68899999988643
No 12
>KOG1475 consensus Ribosomal protein RPL1/RPL2/RL4L4 [RNA processing and modification]
Probab=99.80 E-value=2.6e-20 Score=172.46 Aligned_cols=148 Identities=26% Similarity=0.293 Sum_probs=121.0
Q ss_pred ceeeEEEccCCCee-eeEEcCccccCCCCchHHHHHHHHHHHHHcccCCcc-----cceeeeecCCCCCcc---ccCCCC
Q 025562 98 DLVIPVTNFFNEDK-GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHS-----TKTISEVSGTGKKPW---RQKGTG 168 (251)
Q Consensus 98 ~m~v~V~~i~Ge~~-g~ieLp~~VF~~piR~dllh~vV~~q~a~rRqGta~-----tKtRaEV~GsGrKp~---rQKGTG 168 (251)
...+.||+.+|+.. +.+.|| +||.+|||+||++.++.....|+||.++- .+|++|+||+||.+. |.+|.|
T Consensus 4 rp~vtvy~~~g~~s~~~l~lp-~vf~aPiRpdlv~~v~~~~~~n~rQpyAVs~kAG~QtSAESWGTGRAvaRiPRV~GGG 82 (363)
T KOG1475|consen 4 RPLVTVYSLDGEASKKTLTLP-AVFSAPIRPDLVNFVHTQVRKNRRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGG 82 (363)
T ss_pred cceeeEEeccccccccccccc-ceeccCCcHHHHHHHHHHHhhccccchhhhhhhccccchhhcccccceecccccCCCC
Confidence 34689999999875 579999 99999999999999999999999997654 899999999999998 456666
Q ss_pred cccCCCC-CCCccccceeccCCC-C-ccccccccHHHHHHHHHHHHHHHH---------------hCCCeEEEecccCCC
Q 025562 169 RARHGTL-RGPQFRGGTTMHGPK-P-RSHAIKLNKKVRRLGLKIALSARA---------------AEGKVSLSVSLSLFL 230 (251)
Q Consensus 169 rAR~Gs~-rsP~~rGGG~afgPk-P-R~~~~klNKK~rrlAlrsALSaK~---------------~qg~L~VVd~l~~~~ 230 (251)
..|.|+. ..+++|| |++|.|. . |.|+.++|..+++.|+.||+++.+ .+=.|+|-|+++-
T Consensus 83 T~RsGQgAFgNmCR~-GrMfaPtKt~RrW~rkVn~n~Kr~A~asaiaasavpaLv~arGHrIe~VpelPlVVsd~ve~-- 159 (363)
T KOG1475|consen 83 THRSGQGAFGNMCRG-GRMFAPTKTWRRWHRKVNENEKRYAIASAIAASAVPALVMARGHRIEEVPELPLVVSDKVES-- 159 (363)
T ss_pred cccccchhhhhhccc-ccccCchhhHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHhcCccccccccCceEeehhhHH--
Confidence 6666664 3455555 5556665 4 999999999999999999999987 2445777777754
Q ss_pred CCchh---hhhcCCcccccccc
Q 025562 231 RPSFS---LSLKNTDTHVHIVS 249 (251)
Q Consensus 231 ~pkTk---~~lk~~~~~~~~~~ 249 (251)
--||| .+||++++|-||-+
T Consensus 160 ~~KTkeAV~~Lk~~~a~~di~k 181 (363)
T KOG1475|consen 160 FRKTKEAVALLKKLKAWNDIKK 181 (363)
T ss_pred HHhHHHHHHHHHHhccHHHHHH
Confidence 35888 89999999999854
No 13
>PTZ00428 60S ribosomal protein L4; Provisional
Probab=82.52 E-value=0.7 Score=45.19 Aligned_cols=56 Identities=30% Similarity=0.369 Sum_probs=41.0
Q ss_pred CCCCCccccCCCCcccC--------CCCCCCccccceeccCCCC---cccc-----ccccHHHHHHHHHHHHHHHHhCCC
Q 025562 156 GTGKKPWRQKGTGRARH--------GTLRGPQFRGGTTMHGPKP---RSHA-----IKLNKKVRRLGLKIALSARAAEGK 219 (251)
Q Consensus 156 GsGrKp~rQKGTGrAR~--------Gs~rsP~~rGGG~afgPkP---R~~~-----~klNKK~rrlAlrsALSaK~~qg~ 219 (251)
++++|+| ||||||+ |+.|+|+ -+|||-- +-|. .+..+|+=+.--+.||..-++.--
T Consensus 60 ~tsaksw---GTGRA~aripR~kg~GT~Rs~q-----Ga~~n~~rGG~~FgP~~~~R~~~~KvNkK~rR~Al~SALaa~a 131 (381)
T PTZ00428 60 QHSAESW---GTGRAVARIPRVSGGGTHRSGQ-----GAFGNMCRGGRMFAPTKTWRRWHRKVNLNQKRHAVASALAASG 131 (381)
T ss_pred CCCceec---CCCCCccccccccCCCCCcCcc-----cccCCcCCCceEcCCCCCccccccccCHHHHHHHHHHHHHhhc
Confidence 7899999 9999997 6666655 1335543 4454 456788888899999988887654
No 14
>PHA02324 hypothetical protein
Probab=35.85 E-value=27 Score=24.64 Aligned_cols=28 Identities=36% Similarity=0.548 Sum_probs=22.7
Q ss_pred HHcccCCc-ccceeeeecCCCCCccccCC
Q 025562 139 AKRQQGTH-STKTISEVSGTGKKPWRQKG 166 (251)
Q Consensus 139 a~rRqGta-~tKtRaEV~GsGrKp~rQKG 166 (251)
.+.|||.- .||..+..+-+-|||||..|
T Consensus 18 K~TRQG~G~~TKysATsRN~akK~YRGQG 46 (47)
T PHA02324 18 KKTRQGQGKNTKYSATSRNNAKKPYRGQG 46 (47)
T ss_pred ccccccCCccceeeeeccccccCcccCCC
Confidence 45688755 49999999999999998655
No 15
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=24.55 E-value=32 Score=29.49 Aligned_cols=47 Identities=17% Similarity=0.108 Sum_probs=33.1
Q ss_pred cccccHHHHHHHHHHHHHHH---HhCCCeEEEecccCCCCCchh----hhhcCCcc
Q 025562 195 AIKLNKKVRRLGLKIALSAR---AAEGKVSLSVSLSLFLRPSFS----LSLKNTDT 243 (251)
Q Consensus 195 ~~klNKK~rrlAlrsALSaK---~~qg~L~VVd~l~~~~~pkTk----~~lk~~~~ 243 (251)
...+++++|+.-++.+++.+ ....++++|||+ +.+..|- ..|++.|+
T Consensus 127 Q~~l~~~~R~~n~~~~f~~~~~~~~~~~vllvDDV--~TTGaTl~~~~~~L~~~Ga 180 (190)
T TIGR00201 127 QSKLKATLRFLNLENAFDLKNNSFQGRNIVLVDDV--VTTGATLHEIARLLLELGA 180 (190)
T ss_pred cccCCHHHHHHHHhCcEEccCCCCCCCEEEEEeee--eccHHHHHHHHHHHHHcCC
Confidence 34678888888888877653 334479999998 3677776 55666664
No 16
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=24.15 E-value=98 Score=29.29 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=37.1
Q ss_pred cCCC-CccccccccHHHHHHHHHHHHHHHHhCCCeEEEecccCC
Q 025562 187 HGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKVSLSVSLSLF 229 (251)
Q Consensus 187 fgPk-PR~~~~klNKK~rrlAlrsALSaK~~qg~L~VVd~l~~~ 229 (251)
+|-. +-+|...-+.|.-|-.|+||..-.+.+++++|||+++-+
T Consensus 42 lg~~~ns~y~~s~~EK~lRg~L~S~v~R~Lsk~~iVI~DslNyI 85 (281)
T KOG3062|consen 42 LGIEKNSNYGDSQAEKALRGKLRSAVDRSLSKGDIVIVDSLNYI 85 (281)
T ss_pred cCCCCcccccccHHHHHHHHHHHHHHHhhcccCcEEEEeccccc
Confidence 5554 567888888899999999999999999999999999753
Done!