Query 025562
Match_columns 251
No_of_seqs 176 out of 1201
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 12:51:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dmg_A Ribosomal protein L4; a 100.0 2.4E-55 8.1E-60 389.9 8.2 145 99-244 1-148 (225)
2 3v2d_F 50S ribosomal protein L 100.0 2.5E-53 8.5E-58 373.6 12.2 142 97-244 5-149 (210)
3 3bbo_G Ribosomal protein L4; l 100.0 1E-53 3.4E-58 392.0 6.8 145 97-244 51-200 (293)
4 3r8s_E 50S ribosomal protein L 100.0 1.7E-52 5.8E-57 366.4 9.3 130 113-243 11-143 (201)
5 2zjr_C 50S ribosomal protein L 100.0 2.2E-52 7.5E-57 366.2 8.8 138 100-244 3-143 (205)
6 2ftc_D Mitochondrial ribosomal 100.0 1.5E-45 5.1E-50 316.3 10.2 113 131-244 1-117 (175)
7 3j21_D 50S ribosomal protein L 100.0 4.6E-45 1.6E-49 329.3 11.2 143 99-248 1-171 (255)
8 1vq8_C 50S ribosomal protein L 100.0 1.3E-43 4.5E-48 318.4 12.0 142 99-249 1-168 (246)
9 2zkr_c 60S ribosomal protein L 100.0 3.2E-43 1.1E-47 334.3 11.2 146 97-247 4-180 (421)
10 4a17_C RPL4, ribosomal protein 100.0 5.2E-42 1.8E-46 325.1 12.2 146 97-247 3-185 (410)
11 3iz5_D 60S ribosomal protein L 100.0 9E-41 3.1E-45 316.8 10.4 146 98-248 6-185 (405)
12 2wwb_H 60S ribosomal protein L 100.0 3.3E-40 1.1E-44 309.5 7.1 142 98-247 3-178 (362)
13 2wwb_H 60S ribosomal protein L 43.4 9.1 0.00031 36.0 1.8 46 129-174 39-89 (362)
14 1vq8_C 50S ribosomal protein L 25.7 50 0.0017 29.3 3.5 69 144-219 41-119 (246)
No 1
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1
Probab=100.00 E-value=2.4e-55 Score=389.92 Aligned_cols=145 Identities=43% Similarity=0.644 Sum_probs=88.1
Q ss_pred eeeEEEccCCCeeeeEEcCccccCCCCchHHHHHHHHHHHHHcccCCcccceeeeecCCCCCccccCCCCcccCCCCCCC
Q 025562 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGP 178 (251)
Q Consensus 99 m~v~V~~i~Ge~~g~ieLp~~VF~~piR~dllh~vV~~q~a~rRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~rsP 178 (251)
|+++|||++|+++|+++||++||+.|+|.||||++|+||++++||||++||||+||||+||||||||||||||+|++++|
T Consensus 1 ~~~~v~~~~g~~~g~v~L~~~vF~~~~r~dlih~~v~~~~a~~Rqgt~~tktRaEv~G~GrKp~rQKGTGrAR~Gs~rsP 80 (225)
T 1dmg_A 1 AQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSP 80 (225)
T ss_dssp CEEEEECTTSCEEEEEECCHHHHSSCCCHHHHHHHHHHHHC---------------------------------------
T ss_pred CeeEEEcCCCCEeeEEEcCHHHhCCCccHHHHHHHHHHHHHhccCCccccceeeEeecCCCCCCCCCCCCccccccccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeccCCCCccccccccHHHHHHHHHHHHHHHHhCCCeEEEecccCCCCCchh---hhhcCCccc
Q 025562 179 QFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVSLSVSLSLFLRPSFS---LSLKNTDTH 244 (251)
Q Consensus 179 ~~rGGG~afgPkPR~~~~klNKK~rrlAlrsALSaK~~qg~L~VVd~l~~~~~pkTk---~~lk~~~~~ 244 (251)
+|||||++|||+||+|+++||||+|++||+||||+++++++|+|||+|++ +.|||| ..|++++.+
T Consensus 81 ~~rGGG~~fgPkpR~~~~klnkK~rrlAl~sALs~k~~~~~LvVvd~~~~-~~~KTK~~~~~L~~l~~~ 148 (225)
T 1dmg_A 81 IWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYRENKLLVLDDLKL-ERPKTKSLKEILQNLQLS 148 (225)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCC-SSCCHHHHHHHHHHTTCT
T ss_pred ceecCceecCCcCccccccCCHHHHHHHHHHHHHHHHhCCCEEEEeeccc-CCCCHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999976 899999 678888875
No 2
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ...
Probab=100.00 E-value=2.5e-53 Score=373.64 Aligned_cols=142 Identities=41% Similarity=0.578 Sum_probs=136.7
Q ss_pred cceeeEEEccCCCeeeeEEcCccccCCCCchHHHHHHHHHHHHHcccCCcccceeeeecCCCCCccccCCCCcccCCCCC
Q 025562 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLR 176 (251)
Q Consensus 97 ~~m~v~V~~i~Ge~~g~ieLp~~VF~~piR~dllh~vV~~q~a~rRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~r 176 (251)
.||+++|||++|+++|+++||+ |+|+||||++|+||++|+|||||++|||+||||+||||||||||||||+|+++
T Consensus 5 ~m~~v~V~~~~G~~~g~i~L~~-----~~r~dlih~~v~~~~a~~Rqgt~~tktraEv~G~grKp~rQKGTGrAR~Gs~r 79 (210)
T 3v2d_F 5 AVYQIPVLSPSGRRELAADLPA-----EINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIG 79 (210)
T ss_dssp -CCCCCEECSSSCCCCCCCCCS-----CCCHHHHHHHHHHHHHHTCCCCCCCCCTTTSSCCCCCSSCSSSSSSCCCCCTT
T ss_pred ccceeEEEcCCCCEeeeEecCC-----cccHHHHHHHHHHHHHhccCCccCCCccccccCCCCCCCCCCCCCccCCCccc
Confidence 4789999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred CCccccceeccCCCCccccccccHHHHHHHHHHHHHHHHhCCCeEEEecccCCCCCchh---hhhcCCccc
Q 025562 177 GPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVSLSVSLSLFLRPSFS---LSLKNTDTH 244 (251)
Q Consensus 177 sP~~rGGG~afgPkPR~~~~klNKK~rrlAlrsALSaK~~qg~L~VVd~l~~~~~pkTk---~~lk~~~~~ 244 (251)
+|+|+|||++|||+||+|+++||||+|++|+++|||+++++++|+|||+|++ +.|||| ..|++++++
T Consensus 80 sP~~~gGG~~fgP~pR~~~~klnkK~rrlAl~sALs~k~~~~~l~Vvd~~~~-~~~KTK~~~~~L~~lg~~ 149 (210)
T 3v2d_F 80 APIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAG-VNGKTKEFLAWAKEAGLD 149 (210)
T ss_dssp STTSTTCCCSSCCCCCCCCCCCCHHHHHHHHHHHHHHHHHTTCEEEESCCTT-CSSCHHHHHHHHHHTTCC
T ss_pred CCcccCCeeeCCCCCccceeeCCHHHHHHHHHHHHHHHHhcCCEEEeccccc-CCccHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999986 899999 677888875
No 3
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1e-53 Score=391.96 Aligned_cols=145 Identities=33% Similarity=0.510 Sum_probs=139.0
Q ss_pred cceeeEEEccCCCeeeeEEcCccccCCCCchHHHHHHHHHHHHHcccCCcccceeeeecCCCCCccccCCCCcccCCCCC
Q 025562 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLR 176 (251)
Q Consensus 97 ~~m~v~V~~i~Ge~~g~ieLp~~VF~~piR~dllh~vV~~q~a~rRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~r 176 (251)
+|++++|||++|+++|+|+||++||+.|+|+||||++|+||++|+|||||.||||+||||+||||||||||||||+|+++
T Consensus 51 ~M~~v~V~~~~G~~~g~veLp~~VF~~~~r~dlih~vV~~q~an~RQGTa~tKtRaEV~GgGRKp~RQKGTGRAR~Gs~r 130 (293)
T 3bbo_G 51 ELIPLPILNFSGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGRARRGSQG 130 (293)
T ss_dssp CCEEEECCCSSSCCCSEEEECSSSSSSCCCTTTTTTHHHHHHHHHCCCCCCCCSSTTCSSSCCCCCCCSSSCSCSCCSSS
T ss_pred cCceeEEEcCCCCEeeeEEcCHHHhCCCccHHHHHHHHHHHHHhcccccccCceeeeeccCCCceeccCCCCccccCccc
Confidence 45589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccceeccCCCCccccccccHHHHHHHHHHHHHHHHhCCCeEEEecc--cCCCCCchh---hhhcCCccc
Q 025562 177 GPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVSLSVSL--SLFLRPSFS---LSLKNTDTH 244 (251)
Q Consensus 177 sP~~rGGG~afgPkPR~~~~klNKK~rrlAlrsALSaK~~qg~L~VVd~l--~~~~~pkTk---~~lk~~~~~ 244 (251)
+|+|||||++|||+||+|++|||||+|++||++|||+++ |+|+|||+| ++ +.|||| ..|++++++
T Consensus 131 sP~~rGGGvafGPkPRdy~~klNKK~rrlAlrsALSak~--g~LvVvd~~~~~~-~~~KTK~~~~~Lk~lg~~ 200 (293)
T 3bbo_G 131 SPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAV--GNSFVVEEFAENF-EKPKTKDFIAAMQRWGLD 200 (293)
T ss_dssp CSSSSSSCCSSCCCSCCCCCCCCSHHHHHHHHHHHHHHH--HTTCCCCCCGGGT-TCCSSHHHHTTHHHHSCS
T ss_pred CCceecCceecCCcCcchhhhcCHHHHHHHHHHHHHHHc--CCEEEEecccccc-cCCCHHHHHHHHHHcCCc
Confidence 999999999999999999999999999999999999999 899999999 66 889999 667777775
No 4
>3r8s_E 50S ribosomal protein L4; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_C 1p86_C 1vs8_E 1vs6_E 2aw4_E 2awb_E 1vt2_E 2i2v_E 2j28_E 2i2t_E* 2qao_E* 2qba_E* 2qbc_E* 2qbe_E 2qbg_E 2qbi_E* 2qbk_E* 2qov_E 2qox_E 2qoz_E* ...
Probab=100.00 E-value=1.7e-52 Score=366.35 Aligned_cols=130 Identities=35% Similarity=0.573 Sum_probs=125.3
Q ss_pred eEEcCccccCCCCchHHHHHHHHHHHHHcccCCcccceeeeecCCCCCccccCCCCcccCCCCCCCccccceeccCCCCc
Q 025562 113 FMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPR 192 (251)
Q Consensus 113 ~ieLp~~VF~~piR~dllh~vV~~q~a~rRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~rsP~~rGGG~afgPkPR 192 (251)
+|+||++||+.|+|+||||++|+||++|+|||||++|||+||||+||||||||||||||+|++++|+|+|||++|||+||
T Consensus 11 ~i~L~~~vF~~~~r~dlih~~v~~~~a~~Rqgt~~tktraEv~G~grKp~rQKGTGrAR~Gs~rsP~~~gGG~~fgP~pR 90 (201)
T 3r8s_E 11 ALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQ 90 (201)
T ss_dssp CEECCHHHHSSCCCHHHHHHHHHHHHTTSCCCCCCCCBTTTSSCCCCCSSCSSSSSSCCCCCTTCTTSTTCCBTTCCCCC
T ss_pred eEECCHHHhCCCCCHHHHHHHHHHHHHhCcCCCCCCcceeeecCCCCCCCccCCCCccccCcCcCCceeCCEeecCCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHHHHHhCCCeEEEecccCCCCCchh---hhhcCCcc
Q 025562 193 SHAIKLNKKVRRLGLKIALSARAAEGKVSLSVSLSLFLRPSFS---LSLKNTDT 243 (251)
Q Consensus 193 ~~~~klNKK~rrlAlrsALSaK~~qg~L~VVd~l~~~~~pkTk---~~lk~~~~ 243 (251)
+|+++||||+|++||++|||+++++++|+|||+|++ +.|||| ..|++++.
T Consensus 91 ~~~~klnkK~rrlAl~sALs~k~~~~~l~Vvd~~~~-~~~KTK~~~~~L~~l~~ 143 (201)
T 3r8s_E 91 DHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSV-EAPKTKLLAQKLKDMAL 143 (201)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHTCEEECSCCCC-SSSCHHHHHHHHHHHTC
T ss_pred cceeccCHHHHHHHHHHHHHHHhhcCCEEEeccccc-cCcCHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999986 889999 55666653
No 5
>2zjr_C 50S ribosomal protein L4; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.22.1.1 PDB: 1j5a_K* 1jzy_K* 1jzz_K* 1k01_K* 1nkw_C 1sm1_C* 2zjp_C* 2zjq_C 1jzx_K 3cf5_C* 3dll_C* 3pio_C* 3pip_C* 1nwy_C* 1nwx_C* 1xbp_C* 1pnu_C 1pny_C 1vor_F 1vou_F ...
Probab=100.00 E-value=2.2e-52 Score=366.19 Aligned_cols=138 Identities=37% Similarity=0.545 Sum_probs=133.4
Q ss_pred eeEEEccCCCeeeeEEcCccccCCCCchHHHHHHHHHHHHHcccCCcccceeeeecCCCCCccccCCCCcccCCCCCCCc
Q 025562 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179 (251)
Q Consensus 100 ~v~V~~i~Ge~~g~ieLp~~VF~~piR~dllh~vV~~q~a~rRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~rsP~ 179 (251)
+++|||++|+++|+|+||+ +|+||||++|+||++|+|||||.+|||+||||+||||||||||||||+|++++|+
T Consensus 3 ~v~v~~~~g~~~g~i~L~~------~r~dlih~~v~~~~a~~Rqgt~~tktraEv~G~GrKp~rQKGTGrAR~Gs~rsP~ 76 (205)
T 2zjr_C 3 QINVIGQNGGRTIELPLPE------VNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSVPT 76 (205)
T ss_dssp CCCCSSCCCCCCCCCCTTT------CCHHHHHHHHHHHHHHHCCCCCCCCCCTTTSCCCSCCSCSSSSSSCCCSCSCSTT
T ss_pred eeEEEcCCCCEeeeEECCC------chHHHHHHHHHHHHHhccccccccceeeeccCCCCCCCCcCCCCCcccCcccCCc
Confidence 6899999999999999996 9999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeccCCCCccccccccHHHHHHHHHHHHHHHHhCCCeEEEecccCCCCCchh---hhhcCCccc
Q 025562 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKVSLSVSLSLFLRPSFS---LSLKNTDTH 244 (251)
Q Consensus 180 ~rGGG~afgPkPR~~~~klNKK~rrlAlrsALSaK~~qg~L~VVd~l~~~~~pkTk---~~lk~~~~~ 244 (251)
|+|||++|||+||+|+++||||+|++||++|||+++++++|+|||+|++ +.|||| ..|++++++
T Consensus 77 ~~gGG~~fgP~pR~~~~klnkK~rrlAl~sALs~k~~~~~lvVvd~~~~-~~~KTK~~~~~L~~l~~~ 143 (205)
T 2zjr_C 77 FVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFDI-ADAKTKNFISWAKQNGLD 143 (205)
T ss_dssp STTSCCTTCCCCCCCCCCCCHHHHHHHHHHHHHHHHHTTCCBCSCCTTS-CSSCSHHHHHHHHHTTCC
T ss_pred ccCCeeecCCCCcchhhhcCHHHHHHHHHHHHHHHhhcCCEEEEecccc-CCCCHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999976 889999 667888875
No 6
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=100.00 E-value=1.5e-45 Score=316.29 Aligned_cols=113 Identities=42% Similarity=0.646 Sum_probs=108.8
Q ss_pred HHHHHHHHHHcccCCcccceeeeecCCCCCccccCCCCcccCCCCCCCccccceeccCCC-CccccccccHHHHHHHHHH
Q 025562 131 HRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKI 209 (251)
Q Consensus 131 h~vV~~q~a~rRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~rsP~~rGGG~afgPk-PR~~~~klNKK~rrlAlrs 209 (251)
|++|+||++++|||||+||||+||||+||||||||||||||+|++++|+|+|||++|||+ ||+|+++||||+|++||++
T Consensus 1 h~~v~~~~a~~Rqgt~~tktraEv~G~grKp~rQKGTGrAR~Gs~rsP~~~gGG~~fgP~~pR~~~~klnkK~rrlAl~s 80 (175)
T 2ftc_D 1 HQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKV 80 (175)
T ss_pred CHHHHHHHHHhhcCCCCCcceeeecCCCCCCCCcCCCCccccCCCcCCcccCCEeecCCCCccchhhhcCHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHHhCCCeEEEecccCCCCCchh---hhhcCCccc
Q 025562 210 ALSARAAEGKVSLSVSLSLFLRPSFS---LSLKNTDTH 244 (251)
Q Consensus 210 ALSaK~~qg~L~VVd~l~~~~~pkTk---~~lk~~~~~ 244 (251)
|||+++++++|+|||+|++ +.|||| ..|++++.+
T Consensus 81 ALs~k~~~~~lvVvd~~~~-~~~KTK~~~~~l~~l~~~ 117 (175)
T 2ftc_D 81 ALTVKLAQDDLHIMDSLEL-PTGDPQYLTELAHYRRWG 117 (175)
T ss_pred HHHHhccCCCEEEEecccC-CCCCHHHHHHHHHHCCCC
Confidence 9999999999999999976 889999 677888764
No 7
>3j21_D 50S ribosomal protein L4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=4.6e-45 Score=329.32 Aligned_cols=143 Identities=28% Similarity=0.303 Sum_probs=135.2
Q ss_pred eeeEEEccCCCeeeeEEcCccccCCCCchHHHHHHHHHHHHHccc--CCcc---cceeeeecCCCCC---ccccCCC-Cc
Q 025562 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQ--GTHS---TKTISEVSGTGKK---PWRQKGT-GR 169 (251)
Q Consensus 99 m~v~V~~i~Ge~~g~ieLp~~VF~~piR~dllh~vV~~q~a~rRq--Gta~---tKtRaEV~GsGrK---p~rQKGT-Gr 169 (251)
|+++|||++|+++|+|+|| +||+.|+|+||||++|+||++|+|| ||++ ||||+||||+||| +|||||| |+
T Consensus 1 m~v~V~~~~G~~~g~v~Lp-~vF~~~~r~dli~~~v~~~~an~Rq~~Gt~~~ag~ktraev~G~Gr~~ar~~RqKGtgGr 79 (255)
T 3j21_D 1 MKVKVFDLNGQPVGEIELP-KVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHSMARVERLKTPPRY 79 (255)
T ss_dssp CEEEEECTTSCEEEEEECC-GGGGSCCCHHHHHHHHHHHHHHTCCCCCCCSSTTSSSCCBCCCSSSSSCCCCBCSSSCCC
T ss_pred CeeEEEcCCCCEeeEEEhH-HhhCCCCcHHHHHHHHHHHHHhccccccCCcccCcccceeecCCCCCcCcCCccCCCCCc
Confidence 7899999999999999999 8999999999999999999999999 8888 8999999999996 9999999 99
Q ss_pred ccCCCCCCCccccceeccCCCC-ccccccccHHHHHHHHHHHHHHHHhCC---------------CeEEEecccCCCCCc
Q 025562 170 ARHGTLRGPQFRGGTTMHGPKP-RSHAIKLNKKVRRLGLKIALSARAAEG---------------KVSLSVSLSLFLRPS 233 (251)
Q Consensus 170 AR~Gs~rsP~~rGGG~afgPkP-R~~~~klNKK~rrlAlrsALSaK~~qg---------------~L~VVd~l~~~~~pk 233 (251)
|| ++|+|||||++|||+| |+|+++||||+|++||+||||+++.++ +|+|+|+|+ +.||
T Consensus 80 Ar----rsP~~rGGg~~~gPkp~R~~~~klNkK~rrlAl~sALsa~~~~~lv~~rgh~~~~~~~~~lvVvd~~~--~~~K 153 (255)
T 3j21_D 80 AA----FVPFARGGRRTHPPKVEKIIWEDINKKEKRLALMSAIAATANYDLVRARGHIIDNVPQLPLIVVDDLQ--KVQK 153 (255)
T ss_dssp CS----SCSSSTTCCCSSCCCTTSCCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHTCCCSCTTCSSEEECGGGG--TCCC
T ss_pred cc----cCccccCCeeecCCCCCcccceecCHHHHHHHHHHHHHHHhhcccchhcccccccccceeEEEEeCCc--CCCC
Confidence 98 9999999999999999 899999999999999999999999987 799999985 4689
Q ss_pred hh---hhhcCCccccccc
Q 025562 234 FS---LSLKNTDTHVHIV 248 (251)
Q Consensus 234 Tk---~~lk~~~~~~~~~ 248 (251)
|| ..|++++++.||.
T Consensus 154 TK~~~~~L~~lg~~~dv~ 171 (255)
T 3j21_D 154 TRETREIFKKLGIWDDIV 171 (255)
T ss_dssp HHHHHHHHHHHTCTHHHH
T ss_pred hHHHHHHHHHcCChhhhH
Confidence 99 7899999987754
No 8
>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.22.1.1 PDB: 1k73_E* 1k8a_E* 1k9m_E* 1kc8_E* 1kd1_E* 1kqs_C* 1m1k_E* 1m90_E* 1n8r_E* 1nji_E* 1q7y_E* 1q81_E* 1q82_E* 1q86_E* 1qvf_C 1qvg_C 1s72_C* 1vq4_C* 1vq5_C* 1vq6_C* ...
Probab=100.00 E-value=1.3e-43 Score=318.39 Aligned_cols=142 Identities=32% Similarity=0.427 Sum_probs=134.4
Q ss_pred eeeEEEccCCCeeeeEEcCccccCCCCchHHHHHHHHHHHHHcccCCcc-----cceeeeecCCCCCc---cccCCCCcc
Q 025562 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHS-----TKTISEVSGTGKKP---WRQKGTGRA 170 (251)
Q Consensus 99 m~v~V~~i~Ge~~g~ieLp~~VF~~piR~dllh~vV~~q~a~rRqGta~-----tKtRaEV~GsGrKp---~rQKGTGrA 170 (251)
|+++|||++|++.|+|+|| +||+.|+|+||||++|+||++|+||||+. +||++|+||+|||+ |||| |+|
T Consensus 1 m~v~v~~~~g~~~g~v~Lp-~vF~~~~r~dli~~~v~~~~an~Rqgt~~~~~aG~kt~ae~~GtGR~~ari~rqK--G~a 77 (246)
T 1vq8_C 1 MQATIYDLDGNTDGEVDLP-DVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPKLD--GRA 77 (246)
T ss_dssp CEEEEECTTSCEEEEEECC-GGGGSCCCHHHHHHHHHHHHHHTCCCCCCCTTTTTCCCCBCCCSSSSCCCCCEET--TEE
T ss_pred CeeEEEcCCCCCccEEEhh-HhhCCCccHHHHHHHHHHHHHhcccCcccccccCcccceeeccCCCCcccccccc--Ccc
Confidence 6799999999999999999 99999999999999999999999999999 99999999999999 9999 777
Q ss_pred cCCCCCCCccccceeccCCCC-ccccccccHHHHHHHHHHHHHHHHh--------------CCCeEEEecccCCCCCchh
Q 025562 171 RHGTLRGPQFRGGTTMHGPKP-RSHAIKLNKKVRRLGLKIALSARAA--------------EGKVSLSVSLSLFLRPSFS 235 (251)
Q Consensus 171 R~Gs~rsP~~rGGG~afgPkP-R~~~~klNKK~rrlAlrsALSaK~~--------------qg~L~VVd~l~~~~~pkTk 235 (251)
| ++|+|||||++|||+| |+|+++||||+|++||+||||+++. |++|+|+|+|+ +.||||
T Consensus 78 r----rsP~~rGGg~~~gPkp~R~~~~klnkK~rrlAl~sALsa~~~~~lv~~rGh~~~~~e~~lvVvd~~~--~~~KTK 151 (246)
T 1vq8_C 78 R----RVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDRDEVPVVVSDDFE--DLVKTQ 151 (246)
T ss_dssp C----SSTTSTTCCCSSCCCTTCCCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHTCCCCCSSCSEEECGGGG--GCCCHH
T ss_pred c----cCCccCCCeeecCCCCCccchhhcCHHHHHHHHHHHHHHhhhhhhhhhcccccccccccEEEEeCcc--cCCCHH
Confidence 6 8999999999999998 9999999999999999999999997 79999999996 689999
Q ss_pred ---hhhcCCcccccccc
Q 025562 236 ---LSLKNTDTHVHIVS 249 (251)
Q Consensus 236 ---~~lk~~~~~~~~~~ 249 (251)
..|++++++.||.+
T Consensus 152 ~~~~~L~~lg~~~dv~r 168 (246)
T 1vq8_C 152 EVVSLLEALDVHADIDR 168 (246)
T ss_dssp HHHHHHHHTTCTHHHHH
T ss_pred HHHHHHHhcCCcchhhh
Confidence 78899999876543
No 9
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=3.2e-43 Score=334.31 Aligned_cols=146 Identities=26% Similarity=0.292 Sum_probs=137.3
Q ss_pred cceeeEEEccCCCeee-eEEcCccccCCCCchHHHHHHHHHHHHHcccCCccc-----ceeeeecCCCCCccc-----cC
Q 025562 97 QDLVIPVTNFFNEDKG-FMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHST-----KTISEVSGTGKKPWR-----QK 165 (251)
Q Consensus 97 ~~m~v~V~~i~Ge~~g-~ieLp~~VF~~piR~dllh~vV~~q~a~rRqGta~t-----KtRaEV~GsGrKp~r-----QK 165 (251)
..|+++|||++|+..| +|+|| +||+.|+|+||||++|+||++|+||||+.+ |||+||||+|||||+ ||
T Consensus 4 ~rm~v~V~~~~G~~~g~~ieLp-~VF~~piR~dlIh~vV~~~~an~RQgta~t~~AG~KTraEv~G~GRKp~RiPRv~QK 82 (421)
T 2zkr_c 4 ARPLISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGG 82 (421)
T ss_dssp ---CCEEECTTSSEEEECSSCC-GGGGSCCCHHHHHHHHHHHHHTTCCCCCCCSCTTTCSCCCCCCSSSSSCCSCCBTTT
T ss_pred cCceeEEEcCCCCccccEEehh-HhhCCCccHHHHHHHHHHHHHhccCCCCcCcccCCcceeEecCCCCCcCCcccccCC
Confidence 4688999999999977 89999 999999999999999999999999999998 999999999999999 99
Q ss_pred CCCcccCCCCCCCccccceeccCCC-C-ccccccccHHHHHHHHHHHHHHH---------------HhCCCeEEEecccC
Q 025562 166 GTGRARHGTLRGPQFRGGTTMHGPK-P-RSHAIKLNKKVRRLGLKIALSAR---------------AAEGKVSLSVSLSL 228 (251)
Q Consensus 166 GTGrAR~Gs~rsP~~rGGG~afgPk-P-R~~~~klNKK~rrlAlrsALSaK---------------~~qg~L~VVd~l~~ 228 (251)
||||||+|++++ +|| ||++|||+ | |+|+++||+|+|++||+||||++ +.+++|+|+|+|+
T Consensus 83 GTGRARqGs~rs-~~R-GGr~fgP~kp~R~~~~KlNkK~rrlAlrSALSaka~~~LV~aRGH~i~~~~e~~LVVvD~le- 159 (421)
T 2zkr_c 83 GTHRSGQGAFGN-MCR-GGRMFAPTKTWRRWHRRVNTTQKRYAICSALACLSLPALVMSKGHRIEEVPELPLVVEDKVE- 159 (421)
T ss_dssp TBCCCSTTCCTT-STT-CCCCSSCCCSSSCCCCCCCHHHHHHHHHHHHHHHTCHHHHHHTTCCCCSCSCCSEEECGGGG-
T ss_pred CCCccCcccccc-ccc-cceeeCCCCCCcchhhhcCHHHHHHHHHHHHHhcccchhhhhccccccccccCCEEEEeCCc-
Confidence 999999999999 999 89999999 8 99999999999999999999999 8999999999995
Q ss_pred CCCCchh---hhhcCCcccccc
Q 025562 229 FLRPSFS---LSLKNTDTHVHI 247 (251)
Q Consensus 229 ~~~pkTk---~~lk~~~~~~~~ 247 (251)
+.|||| ..|+++|++.|+
T Consensus 160 -~~~KTK~~v~~Lk~lgl~~d~ 180 (421)
T 2zkr_c 160 -GYKKTKEAVLLLKKLKAWNDI 180 (421)
T ss_dssp -GCCCHHHHHHHHHHTTCTHHH
T ss_pred -cccChHHHHHHHHhcCCCcch
Confidence 689999 788999998775
No 10
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_C 4a1c_C 4a1e_C
Probab=100.00 E-value=5.2e-42 Score=325.14 Aligned_cols=146 Identities=27% Similarity=0.280 Sum_probs=135.7
Q ss_pred cceeeEEE-ccCCCee-ee-EEcCccccCCCCchHHHHHHHHHHHHHccc---------CCcccceeeeecCCCCCccc-
Q 025562 97 QDLVIPVT-NFFNEDK-GF-MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQ---------GTHSTKTISEVSGTGKKPWR- 163 (251)
Q Consensus 97 ~~m~v~V~-~i~Ge~~-g~-ieLp~~VF~~piR~dllh~vV~~q~a~rRq---------Gta~tKtRaEV~GsGrKp~r- 163 (251)
+|++++|| |++|+++ ++ |+|| +||+.|+|+||||++|+||++|+|| |||.++||+||||+|||||+
T Consensus 3 ~~p~v~V~~~~~G~~~~g~~veLp-~VF~~~ir~dlIh~vV~~~~anrRQ~~~~~~~~rGTa~tktraEv~GtGRk~~Ri 81 (410)
T 4a17_C 3 SRPQIHVHDAKEANKQTATKLTLP-AVFTAPIRTDIVHKVFTDLNKNRKQASGVKISTRGTAGMGHSAESWGTGRAVARI 81 (410)
T ss_dssp CCCEEEEEESSSTTEEEEEEEECC-GGGGSCCCHHHHHHHHHHHHHTTCCCCCCCBCSSCBTTCCSCEEECCGGGSSCSS
T ss_pred CCCeeEEEECCCCCccCCceEehh-HhhCCCCcHHHHHHHHHHHHHhCcCcccCCCcccccccCCccceeCCCCCCcccc
Confidence 47899999 8999995 78 9997 7999999999999999999999999 88999999999999999999
Q ss_pred ----cCCCCcccCCCCCCCccccceeccCCCC--ccccccccHHHHHHHHHHHHHHHHh---------------CCCeEE
Q 025562 164 ----QKGTGRARHGTLRGPQFRGGTTMHGPKP--RSHAIKLNKKVRRLGLKIALSARAA---------------EGKVSL 222 (251)
Q Consensus 164 ----QKGTGrAR~Gs~rsP~~rGGG~afgPkP--R~~~~klNKK~rrlAlrsALSaK~~---------------qg~L~V 222 (251)
||||||||||+++ |+|+ ||++|||+| |+|+++||+|+|++||+||||+++. |+.|+|
T Consensus 82 PR~~QKGTGRARqGs~r-P~~r-GGr~fgP~p~~R~y~~KlNKK~rrlAlrSALSaka~~~lV~aRgh~i~~v~e~~LVV 159 (410)
T 4a17_C 82 PRVGGSGTHRSGQAAFG-NQCR-KGRMFAPLKTYRRVHRRVNVNQKRHAVAAALAASALVPLVFARGHRISNVQELPYVF 159 (410)
T ss_dssp EEECCSSSTTTTCBCSS-TTSS-SCCCSSCCCSCCCCCCCCCHHHHHHHHHHHHHHHTCHHHHHHTTCCCTTCCSSSEEE
T ss_pred ccccCCCCCcccccccC-CccC-CeEEcCCCCCccchhhhhCHHHHHHHHHHHHHHhcchhhhhhccccccccCcCCEEE
Confidence 9999999999999 9888 899999997 9999999999999999999999984 788999
Q ss_pred EecccCCCCCchh---hhhcCCcccccc
Q 025562 223 SVSLSLFLRPSFS---LSLKNTDTHVHI 247 (251)
Q Consensus 223 Vd~l~~~~~pkTk---~~lk~~~~~~~~ 247 (251)
+|+|+ +.|||| ..|+++|++.||
T Consensus 160 ~D~~e--~~~KTK~~v~~Lk~lg~~~dv 185 (410)
T 4a17_C 160 DDSVE--SYEKTKQAVAFLKRVGAYDDV 185 (410)
T ss_dssp CTTGG--GCCSHHHHHHHHHHHTTHHHH
T ss_pred EecCc--CCCCHHHHHHHHHHcCCcchh
Confidence 99886 458999 789999998765
No 11
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_D
Probab=100.00 E-value=9e-41 Score=316.82 Aligned_cols=146 Identities=26% Similarity=0.319 Sum_probs=131.1
Q ss_pred ceeeEEEccCCCeee----eEEcCccccCCCCchHHHHHHHHHHHHHcccCCcccc-----eeeeecCCCCCcc---ccC
Q 025562 98 DLVIPVTNFFNEDKG----FMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTK-----TISEVSGTGKKPW---RQK 165 (251)
Q Consensus 98 ~m~v~V~~i~Ge~~g----~ieLp~~VF~~piR~dllh~vV~~q~a~rRqGta~tK-----tRaEV~GsGrKp~---rQK 165 (251)
..+++|||++|+++| +|+|| +||+.|+|+||||+||+||++|+||||+.+| ||+||||+||||| |||
T Consensus 6 rp~v~V~~~~G~~~g~~~~~v~Lp-~VF~~~~r~dlIh~vV~~~~an~RQgt~~tk~AG~~traEv~GtGRk~~RipRQK 84 (405)
T 3iz5_D 6 RPLVSVKALEGDMATDNSSSLALA-EVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVP 84 (405)
T ss_dssp CCEECCBCCSCCCCSSCCCCEECC-GGGGSCCCHHHHHHHHHHHHHTCSCCCCSCTTTTTCSCCCCCCSSSSSCSSCCCC
T ss_pred CceEEEEeCCCCcccccceeeccH-HHhCCCCCHHHHHHHHHHHHHhhhcCcCCCccccCCccceecCCCCCcccccccc
Confidence 457899999999998 79997 9999999999999999999999999999999 9999999999999 999
Q ss_pred --CCCcccCCCCCCCccccceeccCCCC--ccccccccHHHHHHHHHHHHHHHHh---------------CCCeEEEecc
Q 025562 166 --GTGRARHGTLRGPQFRGGTTMHGPKP--RSHAIKLNKKVRRLGLKIALSARAA---------------EGKVSLSVSL 226 (251)
Q Consensus 166 --GTGrAR~Gs~rsP~~rGGG~afgPkP--R~~~~klNKK~rrlAlrsALSaK~~---------------qg~L~VVd~l 226 (251)
||||||+|++ |+|+|||++|||+| |+|+++||||+|++||+||||+++. |+.|+|+|++
T Consensus 85 G~GTgRAr~gs~--~~~~gGGr~fgP~p~~R~y~~klNKK~rrlAlrSALSaka~~~lV~aRghri~~v~e~~LVV~D~~ 162 (405)
T 3iz5_D 85 GGGTHRAGQGAF--GNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIETVPELPLVISDSA 162 (405)
T ss_dssp CCSSSCCCSCCS--SSSSTTCCCSSSCCSCCCCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHTCCCCCCSSSSEEECTTS
T ss_pred CCCCCccCCCCC--CCccCCeEEcCCCCCCccceeecCHHHHHHHHHHHHHHhcchhhhhhccccccccccCCEEEEecC
Confidence 5556666654 89999999999998 9999999999999999999999975 6777777777
Q ss_pred cCCCCCchh---hhhcCCccccccc
Q 025562 227 SLFLRPSFS---LSLKNTDTHVHIV 248 (251)
Q Consensus 227 ~~~~~pkTk---~~lk~~~~~~~~~ 248 (251)
+ +.|||| ..|++++++.||.
T Consensus 163 ~--~~~KTK~~v~~Lk~lg~~~d~~ 185 (405)
T 3iz5_D 163 E--SIEKTSQAIKILKQVGAYADAE 185 (405)
T ss_dssp S--SCCCHHHHHHHHHHHTCHHHHH
T ss_pred c--ccCChHHHHHHHHHcCCccccc
Confidence 3 679999 7899999987654
No 12
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D
Probab=100.00 E-value=3.3e-40 Score=309.49 Aligned_cols=142 Identities=27% Similarity=0.378 Sum_probs=136.2
Q ss_pred ceeeEEEccCCCeeee-EEcCccccCCCCchHHHHHHHHHHHHHcccCCcccceeeeecCCCCCccccCCCCcccC----
Q 025562 98 DLVIPVTNFFNEDKGF-MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARH---- 172 (251)
Q Consensus 98 ~m~v~V~~i~Ge~~g~-ieLp~~VF~~piR~dllh~vV~~q~a~rRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~---- 172 (251)
.++++|||++|++.|+ |+|| +||+.|+|+||||++|+||++|+||||+.+|+++|+ +|+||| ||||||+
T Consensus 3 r~~v~V~~~~G~~~g~~i~Lp-~VF~~p~r~dlih~vv~~~~an~RQgt~~tk~rgev--tg~K~w---GTGRAraripR 76 (362)
T 2wwb_H 3 RPQVTVHSLTGEATANALPLP-AVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQ--TSAESW---GTGRAVARIPR 76 (362)
T ss_dssp SSCCCCCCSSCSCCSCCCCCC-GGGCSCCCHHHHHHHHHHHHHHHCCCCCCCSSSSCS--SCCSSC---CCCSSSCSCSC
T ss_pred CCeeEEEcCCCcCcCceEehh-HhhCCCccHHHHHHHHHHHHHhccCCCCCCCccccc--ccceec---CCCCCeeeccc
Confidence 4679999999999998 9999 999999999999999999999999999999999999 899999 9999999
Q ss_pred ----CCCCCCc-----cccceeccCCCC--ccccccccHHHHHHHHHHHHHHH---------------HhCCCeEEEecc
Q 025562 173 ----GTLRGPQ-----FRGGTTMHGPKP--RSHAIKLNKKVRRLGLKIALSAR---------------AAEGKVSLSVSL 226 (251)
Q Consensus 173 ----Gs~rsP~-----~rGGG~afgPkP--R~~~~klNKK~rrlAlrsALSaK---------------~~qg~L~VVd~l 226 (251)
|+.++|+ |+|||++|||+| |+|+++||+|+|++|++||||++ +.+++|+|+|+|
T Consensus 77 v~g~Gs~RSp~ga~~~~~gGG~~fgP~p~~R~~~~klNkK~rrlAl~SALsaka~~~lv~arGH~i~~~~e~~LvVvd~~ 156 (362)
T 2wwb_H 77 VGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDL 156 (362)
T ss_dssp CCSCSSSSCSSTTTSSSCSSSCCSSSSCSSCCCCCCCCHHHHHHHHHHHHHGGGCSTHHHHHTCCCCSCSSCSBCCCGGG
T ss_pred ccCCCCCCCcccccCCccCCeEECCCCCCCcchhhhcCHHHHHHHHHHHHHhccchhhhhhccccccccccCcEEEEecc
Confidence 9999999 999999999998 99999999999999999999999 999999999999
Q ss_pred cCCCCCchh---hhhcCCcccccc
Q 025562 227 SLFLRPSFS---LSLKNTDTHVHI 247 (251)
Q Consensus 227 ~~~~~pkTk---~~lk~~~~~~~~ 247 (251)
+ +.|||| ..|+++|++.|+
T Consensus 157 -~-~~~KTK~~~~~Lk~lg~~~d~ 178 (362)
T 2wwb_H 157 -E-SIQKTKEAVAALKAVGAHSDL 178 (362)
T ss_dssp -G-TCCCHHHHHHHHHHHSCSHHH
T ss_pred -c-ccCCHHHHHHHHHhcCCCcch
Confidence 4 889999 788999988774
No 13
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D
Probab=43.37 E-value=9.1 Score=36.03 Aligned_cols=46 Identities=24% Similarity=0.212 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcccCCcccceeeeecCCCCCcc-----ccCCCCcccCCC
Q 025562 129 IIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW-----RQKGTGRARHGT 174 (251)
Q Consensus 129 llh~vV~~q~a~rRqGta~tKtRaEV~GsGrKp~-----rQKGTGrAR~Gs 174 (251)
+++..-...+-....-++...+.++.||+||... +|+||.|+.+|.
T Consensus 39 v~~~~an~RQgt~~tk~rgevtg~K~wGTGRAraripRv~g~Gs~RSp~ga 89 (362)
T 2wwb_H 39 FTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQGA 89 (362)
T ss_dssp HHHHHHHHCCCCCCCSSSSCSSCCSSCCCCSSSCSCSCCCSCSSSSCSSTT
T ss_pred HHHHHHhccCCCCCCCcccccccceecCCCCCeeecccccCCCCCCCcccc
Confidence 3444333444444555666669999999999998 477777777633
No 14
>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.22.1.1 PDB: 1k73_E* 1k8a_E* 1k9m_E* 1kc8_E* 1kd1_E* 1kqs_C* 1m1k_E* 1m90_E* 1n8r_E* 1nji_E* 1q7y_E* 1q81_E* 1q82_E* 1q86_E* 1qvf_C 1qvg_C 1s72_C* 1vq4_C* 1vq5_C* 1vq6_C* ...
Probab=25.66 E-value=50 Score=29.29 Aligned_cols=69 Identities=16% Similarity=0.258 Sum_probs=45.8
Q ss_pred CCcccceeeeecCC--CCCccccCCCCcccCCCCCCCccccceeccCCCCcc----ccc----cccHHHHHHHHHHHHHH
Q 025562 144 GTHSTKTISEVSGT--GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRS----HAI----KLNKKVRRLGLKIALSA 213 (251)
Q Consensus 144 Gta~tKtRaEV~Gs--GrKp~rQKGTGrAR~Gs~rsP~~rGGG~afgPkPR~----~~~----klNKK~rrlAlrsALSa 213 (251)
....-..++|++|+ +.++| ||||++. |.|--.|-| ++.|.-|- +-. +...|+=+.--+.||..
T Consensus 41 n~Rqgt~~~~~aG~kt~ae~~---GtGR~~a---ri~rqKG~a-rrsP~~rGGg~~~gPkp~R~~~~klnkK~rrlAl~s 113 (246)
T 1vq8_C 41 NRKQDYGSDEYAGLRTPAESF---GSGRGQA---HVPKLDGRA-RRVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRS 113 (246)
T ss_dssp HTCCCCCCCTTTTTCCCCBCC---CSSSSCC---CCCEETTEE-CSSTTSTTCCCSSCCCTTCCCCCCCCHHHHHHHHHH
T ss_pred hcccCcccccccCcccceeec---cCCCCcc---ccccccCcc-ccCCccCCCeeecCCCCCccchhhcCHHHHHHHHHH
Confidence 44445568999999 99999 8888883 222222444 68887432 333 34677778888888887
Q ss_pred HHhCCC
Q 025562 214 RAAEGK 219 (251)
Q Consensus 214 K~~qg~ 219 (251)
-+.+--
T Consensus 114 ALsa~~ 119 (246)
T 1vq8_C 114 ALAATA 119 (246)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 777543
Done!