BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025563
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana
Length = 322
Score = 297 bits (761), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 140/215 (65%), Positives = 167/215 (77%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I KD T+LIGNTP+VYLNNV +GCV R+AAKLEMMEPC SVKDRI SMI DAE+KGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PG+SVLIE T GNTG+GLAF AA +GYKLII MP+ S ERRI+L A G E+ L D A G
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXXX 195
+G + K EEIL+ TPNG+M +QFENPANPKIHYETTGPEIWK +GG +D V+
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 196 XXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
++LKE+N N+K+YGVEP ESA+L+GG+PG
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPG 219
>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana In Complex With C-Terminal Peptide
From Arabidopsis Serine Acetyltransferase
Length = 320
Score = 297 bits (761), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 140/215 (65%), Positives = 167/215 (77%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I KD T+LIGNTP+VYLNNV +GCV R+AAKLEMMEPC SVKDRI SMI DAE+KGLI
Sbjct: 3 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 62
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PG+SVLIE T GNTG+GLAF AA +GYKLII MP+ S ERRI+L A G E+ L D A G
Sbjct: 63 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 122
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXXX 195
+G + K EEIL+ TPNG+M +QFENPANPKIHYETTGPEIWK +GG +D V+
Sbjct: 123 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 182
Query: 196 XXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
++LKE+N N+K+YGVEP ESA+L+GG+PG
Sbjct: 183 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPG 217
>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
pdb|4AEC|B Chain B, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
Length = 430
Score = 297 bits (760), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 138/215 (64%), Positives = 166/215 (77%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I + +QLIG TPMVYLN++ GCVA IAAKLE+MEPCCSVKDRI SM+ DAE+KG I+
Sbjct: 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFIS 172
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PGKSVL+E T GNTGIGLAFIAA RGY+LI+ MP+ SMERR++L+A GAE+ L D A G
Sbjct: 173 PGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKG 232
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXXX 195
G ++K EEIL NTP+ +M +QF+NPANPKIHYETTGPEIW D+ G VDI VA
Sbjct: 233 MTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGG 292
Query: 196 XXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
RF+KEKNP +V GVEPTES +L+GG+PG
Sbjct: 293 TITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPG 327
>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana
O-Acetylserine Sulfhydrylase K46a Mutant
Length = 322
Score = 295 bits (756), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 139/215 (64%), Positives = 166/215 (77%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I KD T+LIGNTP+VYLNNV +GCV R+AAKLEMMEPC SV DRI SMI DAE+KGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVADRIGFSMISDAEKKGLIK 64
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PG+SVLIE T GNTG+GLAF AA +GYKLII MP+ S ERRI+L A G E+ L D A G
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXXX 195
+G + K EEIL+ TPNG+M +QFENPANPKIHYETTGPEIWK +GG +D V+
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 196 XXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
++LKE+N N+K+YGVEP ESA+L+GG+PG
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPG 219
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
Length = 344
Score = 270 bits (691), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 123/220 (55%), Positives = 158/220 (71%)
Query: 11 HHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEE 70
H IKK +QLIG TP+VYLN V +GC A +A K EMM+P S+KDR A +MI DAEE
Sbjct: 20 HASTNIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIKDRPAYAMITDAEE 79
Query: 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130
K LITPGK+ LIE T GN GI +AF+AA++GYK+++ MPS S+ERR+ +RA GAE+ L
Sbjct: 80 KNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILT 139
Query: 131 DQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAX 190
D A G G ++K E+L NTPN M +QF NPAN ++H+ETTGPEIW+D+ G VDI V
Sbjct: 140 DPAKGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMG 199
Query: 191 XXXXXXXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
++LK KNPN+K+YGVEP+ES +LNGG+PG
Sbjct: 200 IGSGGTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPG 239
>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|E Chain E, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|F Chain F, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
Length = 344
Score = 268 bits (685), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 122/220 (55%), Positives = 157/220 (71%)
Query: 11 HHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEE 70
H IKK +QLIG TP+VYLN V +GC A +A K EMM+P S+ DR A +MI DAEE
Sbjct: 20 HASTNIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEE 79
Query: 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130
K LITPGK+ LIE T GN GI +AF+AA++GYK+++ MPS S+ERR+ +RA GAE+ L
Sbjct: 80 KNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILT 139
Query: 131 DQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAX 190
D A G G ++K E+L NTPN M +QF NPAN ++H+ETTGPEIW+D+ G VDI V
Sbjct: 140 DPAKGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMG 199
Query: 191 XXXXXXXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
++LK KNPN+K+YGVEP+ES +LNGG+PG
Sbjct: 200 IGSGGTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPG 239
>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine
Sulfhydrylase (oass) From Mycobacterium Tuberculosis In
Complex With The Reaction Intermediate
Alpha-aminoacrylate
Length = 313
Score = 201 bits (511), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 136/216 (62%), Gaps = 1/216 (0%)
Query: 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLI 74
+I +D TQLIG TP+V L V DG VA I AKLE P SVKDRI ++M++ AE+ GLI
Sbjct: 5 SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLI 64
Query: 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG 134
P ++++E T GNTGI LA + A RGY+ ++ MP S+ERR++LRA GAE+ L A
Sbjct: 65 KP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 123
Query: 135 GFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXX 194
G G + K EE+ F+ +QFENPANP IH TT E+W+D+ G VDI+VA
Sbjct: 124 GMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTG 183
Query: 195 XXXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
+ +KE+ P+ + VEP S +L+GGQ G
Sbjct: 184 GTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKG 219
>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis
pdb|2Q3C|A Chain A, 2.1 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis In Complex With The Inhibitory Peptide Dfsi
Length = 313
Score = 199 bits (506), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 135/216 (62%), Gaps = 1/216 (0%)
Query: 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLI 74
+I +D TQLIG TP+V L V DG VA I AKLE P SV DRI ++M++ AE+ GLI
Sbjct: 5 SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVXDRIGVAMLQAAEQAGLI 64
Query: 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG 134
P ++++E T GNTGI LA + A RGY+ ++ MP S+ERR++LRA GAE+ L A
Sbjct: 65 KP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 123
Query: 135 GFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXX 194
G G + K EE+ F+ +QFENPANP IH TT E+W+D+ G VDI+VA
Sbjct: 124 GMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTG 183
Query: 195 XXXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
+ +KE+ P+ + VEP S +L+GGQ G
Sbjct: 184 GTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKG 219
>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine
Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc
Baa-535 M
Length = 314
Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 133/215 (61%), Gaps = 1/215 (0%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I ++ TQLIG TP+V L V DG A + AKLE P S+KDRI ++MI AE+ GLI
Sbjct: 7 IAENITQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLIK 66
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
P ++++E T GNTGI LA ++A RGYK ++ MP S+ERR++LRA GAE+ L A G
Sbjct: 67 P-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGAEG 125
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXXX 195
G + K EE+ F+ +QFENPANP +H TT E+W+D+ G VDI V+
Sbjct: 126 MAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTGG 185
Query: 196 XXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
+ +K++ P+ + VEP S +L+GGQ G
Sbjct: 186 TITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKG 220
>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|B Chain B, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|C Chain C, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|D Chain D, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
Length = 314
Score = 190 bits (483), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 132/215 (61%), Gaps = 1/215 (0%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I ++ QLIG TP+V L V DG A + AKLE P S+KDRI ++MI AE+ GLI
Sbjct: 7 IAENIAQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLIK 66
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
P ++++E T GNTGI LA ++A RGYK ++ MP S+ERR++LRA GAE+ L A G
Sbjct: 67 P-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGAEG 125
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXXX 195
G + K EE+ F+ +QFENPANP +H TT E+W+D+ G VDI V+
Sbjct: 126 MAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTGG 185
Query: 196 XXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
+ +K++ P+ + VEP S +L+GGQ G
Sbjct: 186 TITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKG 220
>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From
Geobacillus Kaustophilus Hta426
Length = 308
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 135/210 (64%), Gaps = 2/210 (0%)
Query: 21 TQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSV 80
T+LIG+TP V LN +VD A + KLE M P SVKDRIAL+MI+ AE+ G + PG ++
Sbjct: 9 TELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDTI 68
Query: 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGIL 140
+E T GNTGIGLA +AA +GYK ++VMP S+ERR +LRA GAE+ L A G G +
Sbjct: 69 -VEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGMRGAI 127
Query: 141 RKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXXXXXXXX 200
K EE++ FM +QF+N ANP+IH TTG EI + G +D VA
Sbjct: 128 AKAEELVREH-GYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGGTITGA 186
Query: 201 XRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
+ L+E PNIK+Y VEP +S +L+GG+PG
Sbjct: 187 GKVLREAYPNIKIYAVEPADSPVLSGGKPG 216
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 131/217 (60%), Gaps = 1/217 (0%)
Query: 14 RAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGL 73
R + + QLIG TP +YLN + + A++ K+E P SVKDR+ ++ AE++G
Sbjct: 30 RNVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGK 88
Query: 74 ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA 133
+ PGKSV++E++ GNTG+ LA + A+RGYK+II MP S+ERR +LR GAEV L A
Sbjct: 89 LIPGKSVVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 148
Query: 134 GGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXX 193
G +G + ++I++ PN + QF N IH ETTGPEIW+ + +VD +A
Sbjct: 149 LGMKGAVTMAKKIVTANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGT 208
Query: 194 XXXXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
R LK+ + ++ VEP ES +L+GG+PG
Sbjct: 209 GGTLTGVARALKKMGSHARIVAVEPMESPVLSGGKPG 245
>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1OAS|B Chain B, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1FCJ|A Chain A, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|B Chain B, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|C Chain C, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|D Chain D, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
Length = 322
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 138/212 (65%), Gaps = 7/212 (3%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I +D + IG+TP+V LN + +G RI AK+E P SVK RI +MI DAE++G++
Sbjct: 3 IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLK 59
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PG L+E T GNTGI LA++AA RGYKL + MP S+ERR +L+ALGA + L + A G
Sbjct: 60 PGVE-LVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKG 118
Query: 136 FEGILRKGEEILSNTPNGF-MFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXX 194
+G ++K EEI+++ P + + +QF NPANP+IH +TTGPEIW+D+ G VD+ ++
Sbjct: 119 MKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTG 178
Query: 195 XXXXXXXRFLK--EKNPNIKVYGVEPTESAML 224
R++K + ++ VEPT+S ++
Sbjct: 179 GTLTGVTRYIKGTKGKTDLITVAVEPTDSPVI 210
>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani In Complex With Designed
Tetrapeptide
pdb|3TBH|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase In
Complex With Octapeptide Derived From Serine Acetyl
Transferase Of Leishmania Donovani
pdb|3SPX|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani
Length = 334
Score = 174 bits (441), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 131/217 (60%), Gaps = 1/217 (0%)
Query: 14 RAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGL 73
+ + + QLIG TP +YLN + + A++ K+E P SV DR+ ++ AE++G
Sbjct: 9 KNVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVXDRLGFAIYDKAEKEGK 67
Query: 74 ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA 133
+ PGKS+++E++ GNTG+ LA + A+RGYK+II MP S+ERR +LR GAEV L A
Sbjct: 68 LIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127
Query: 134 GGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXX 193
G +G + ++I++ PN + QF N IH ETTGPEIW+ + +VD +A
Sbjct: 128 LGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGT 187
Query: 194 XXXXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
R LK+ + ++ VEPTES +L+GG+PG
Sbjct: 188 GGTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPG 224
>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
pdb|1D6S|B Chain B, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
Length = 322
Score = 173 bits (438), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 137/212 (64%), Gaps = 7/212 (3%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I +D + IG+TP+V LN + +G RI AK+E P SV RI +MI DAE++G++
Sbjct: 3 IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVACRIGANMIWDAEKRGVLK 59
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PG L+E T GNTGI LA++AA RGYKL + MP S+ERR +L+ALGA + L + A G
Sbjct: 60 PGVE-LVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKG 118
Query: 136 FEGILRKGEEILSNTPNGF-MFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXX 194
+G ++K EEI+++ P + + +QF NPANP+IH +TTGPEIW+D+ G VD+ ++
Sbjct: 119 MKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTG 178
Query: 195 XXXXXXXRFLK--EKNPNIKVYGVEPTESAML 224
R++K + ++ VEPT+S ++
Sbjct: 179 GTLTGVTRYIKGTKGKTDLITVAVEPTDSPVI 210
>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase
pdb|2ECO|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Methylvalerate
pdb|2ECQ|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 3-Hydroxylactate
pdb|2EFY|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
pdb|2EFY|B Chain B, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
Length = 304
Score = 170 bits (431), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 131/213 (61%), Gaps = 10/213 (4%)
Query: 24 IGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGK-SVLI 82
IG TP+V L VV+ +A + KLE + P S+KDR A MIKDAEE+G++ PG V++
Sbjct: 7 IGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIV 66
Query: 83 ETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD----QAGGFEG 138
E T GNTGIGLA IAA RGY+LI+ MP+ S ER+ VL+A GAE+ L D E
Sbjct: 67 EPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREE 126
Query: 139 ILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXXXXXX 198
LR EE+ FM QF+NPAN + HYETTGPE+++ G +D V
Sbjct: 127 ALRLKEEL-----GAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181
Query: 199 XXXRFLKEKNPNIKVYGVEPTESAMLNGGQPGR 231
R+LKE+ P++KV VEP S +L+GG+ G+
Sbjct: 182 GVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQ 214
>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|B Chain B, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|C Chain C, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|D Chain D, Crystal Structure Of Cysteine Synthase B
Length = 303
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 121/205 (59%), Gaps = 2/205 (0%)
Query: 22 QLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVL 81
Q IGNTP+V L + + + KLE P SVKDR ALSMI +AE++G I PG VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG-DVL 64
Query: 82 IETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILR 141
IE T GNTGI LA IAAL+GY++ ++MP S ERR +RA GAE+ L + G EG
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 142 KGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXXXXXXXXX 201
E ++N G + QF NP NP HY TTGPEIW+ +GG + V+
Sbjct: 125 LALE-MANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 202 RFLKEKNPNIKVYGVEPTESAMLNG 226
RF++E++ + + G++P E + + G
Sbjct: 184 RFMREQSKPVTIVGLQPEEGSSIPG 208
>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|B Chain B, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|C Chain C, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|D Chain D, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|E Chain E, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|F Chain F, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|G Chain G, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|H Chain H, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
Length = 303
Score = 160 bits (405), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 90/205 (43%), Positives = 118/205 (57%), Gaps = 2/205 (0%)
Query: 22 QLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVL 81
Q IGNTP+V L + + I KLE P SVKDR ALSMI +AE++G I PG VL
Sbjct: 6 QTIGNTPLVKLQRIGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG-DVL 64
Query: 82 IETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILR 141
IE T GNTGI LA IAAL+GY++ ++MP S ERR +RA GAE+ L + G EG R
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGA-R 123
Query: 142 KGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXXXXXXXXX 201
+S G + QF NP NP HY TTGPEIW+ + G + V+
Sbjct: 124 DLALAMSERGEGKLLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITGVS 183
Query: 202 RFLKEKNPNIKVYGVEPTESAMLNG 226
RFL+E+ + + G++P E + + G
Sbjct: 184 RFLREQEKPVTIVGLQPEEGSSIPG 208
>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase B
Length = 303
Score = 160 bits (405), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 88/205 (42%), Positives = 120/205 (58%), Gaps = 2/205 (0%)
Query: 22 QLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVL 81
Q IGNTP+V L + + + KLE P SV DR ALSMI +AE++G I PG VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGRIKPG-DVL 64
Query: 82 IETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILR 141
IE T GNTGI LA IAAL+GY++ ++MP S ERR +RA GAE+ L + G EG
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 142 KGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXXXXXXXXX 201
E ++N G + QF NP NPK HY TTGPEIW+ +GG + V+
Sbjct: 125 LALE-MANRGEGKLLDQFNNPDNPKAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 202 RFLKEKNPNIKVYGVEPTESAMLNG 226
F++E++ + + G++P E + + G
Sbjct: 184 EFMREQSKPVTIVGLQPEEGSSIPG 208
>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O-
Acetylserine Sulfhydrylase
Length = 303
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/205 (42%), Positives = 120/205 (58%), Gaps = 2/205 (0%)
Query: 22 QLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVL 81
Q IGNTP+V L + + + KLE P SV DR ALSMI +AE++G I PG VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGEIKPG-DVL 64
Query: 82 IETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILR 141
IE T GNTGI LA IAAL+GY++ ++MP S ERR +RA GAE+ L + G EG
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 142 KGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXXXXXXXXX 201
E ++N G + QF NP NP HY TTGPEIW+ +GG + V+
Sbjct: 125 LALE-MANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 202 RFLKEKNPNIKVYGVEPTESAMLNG 226
RF++E++ + + G++P E + + G
Sbjct: 184 RFMREQSKPVTIVGLQPEEGSSIPG 208
>pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex
pdb|3IQG|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnwni
pdb|3IQH|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnydi
pdb|3IQI|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mneni
Length = 316
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 128/213 (60%), Gaps = 5/213 (2%)
Query: 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLI 74
AI D + IGNTP+V L + G + K+E P SV RI +M+ AE+ G +
Sbjct: 2 AIYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVXCRIGANMVWQAEKDGTL 59
Query: 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG 134
T GK + ++ T GNTGI LA++AA RGYK+ + MP S+ER+ +L LG + L + A
Sbjct: 60 TKGKEI-VDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAK 118
Query: 135 GFEGILRKGEEILSNTPNGF-MFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXX 193
G +G + K EEI+++ P+ + M +QFENPANP+IH ETTGPEIWKD+ G VD++VA
Sbjct: 119 GMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGT 178
Query: 194 XXXXXXXXRFLK-EKNPNIKVYGVEPTESAMLN 225
R +K + I VEP ES +++
Sbjct: 179 GGSITGISRAIKLDFGKQITSVAVEPVESPVIS 211
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 121/217 (55%), Gaps = 6/217 (2%)
Query: 12 HKRAIKKDATQLIGNTPMVYLNNV--VDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAE 69
H++ I + ++IG TP+V LNN+ DG + AK E + P SVKDRI M++DAE
Sbjct: 46 HRQQITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAE 105
Query: 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129
E+GL+ PG ++ IE T GNTGIGLA A++GYK IIVMP S E+ LR LGA++
Sbjct: 106 EQGLLKPGYTI-IEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIR 164
Query: 130 ADQAGGF---EGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDI 186
+ EG++ +++ TPN + Q+ N NP HY+ T EI VD+
Sbjct: 165 TPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDM 224
Query: 187 LVAXXXXXXXXXXXXRFLKEKNPNIKVYGVEPTESAM 223
+V R +KE+ P+ ++ GV+P S +
Sbjct: 225 IVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSIL 261
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/229 (40%), Positives = 121/229 (52%), Gaps = 11/229 (4%)
Query: 5 ASMEDNHHKRAIKK-----DATQLIGNTPMVYLNNVVD--GCVARIAAKLEMMEPCCSVK 57
AS +HH K D + IG+TPMV +N + G + AK E SVK
Sbjct: 17 ASESPHHHTAPAKSPKILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVK 76
Query: 58 DRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERR 117
DRI+L MI+DAE G + PG ++ IE T GNTGIGLA AA+RGY+ IIVMP S E+
Sbjct: 77 DRISLRMIEDAERDGTLKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKV 135
Query: 118 IVLRALGAEVYLADQAGGF---EGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGP 174
VLRALGAE+ F E + + + PN + Q+ N +NP HY+TT
Sbjct: 136 DVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTAD 195
Query: 175 EIWKDSGGDVDILVAXXXXXXXXXXXXRFLKEKNPNIKVYGVEPTESAM 223
EI + G +D+LVA R LKEK P ++ GV+P S +
Sbjct: 196 EILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSIL 244
>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
Length = 435
Score = 145 bits (365), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/229 (40%), Positives = 121/229 (52%), Gaps = 11/229 (4%)
Query: 5 ASMEDNHHKRAIKK-----DATQLIGNTPMVYLNNVVD--GCVARIAAKLEMMEPCCSVK 57
AS +HH K D + IG+TPMV +N + G + AK E SVK
Sbjct: 82 ASESPHHHTAPAKSPKILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVK 141
Query: 58 DRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERR 117
DRI+L MI+DAE G + PG ++ IE T GNTGIGLA AA+RGY+ IIVMP S E+
Sbjct: 142 DRISLRMIEDAERDGTLKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKV 200
Query: 118 IVLRALGAEVYLADQAGGF---EGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGP 174
VLRALGAE+ F E + + + PN + Q+ N +NP HY+TT
Sbjct: 201 DVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTAD 260
Query: 175 EIWKDSGGDVDILVAXXXXXXXXXXXXRFLKEKNPNIKVYGVEPTESAM 223
EI + G +D+LVA R LKEK P ++ GV+P S +
Sbjct: 261 EILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSIL 309
>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
pdb|3FCA|B Chain B, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
Length = 291
Score = 144 bits (363), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 119/211 (56%), Gaps = 9/211 (4%)
Query: 22 QLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVL 81
+LIG+TP+V L D +RI KLE P SVKDR AL MI DAE++GL+ G +
Sbjct: 4 RLIGSTPIVRL----DSIDSRIXLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG---I 56
Query: 82 IETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILR 141
+E T GN GI +A I A RG+++I+ MP S+ERR VL+ LGAE+ L G +G +
Sbjct: 57 VEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVE 116
Query: 142 KGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXXXXXXXXX 201
K EI S M QFENP N H TTGPEI K +D VA
Sbjct: 117 KALEI-SRETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVG 175
Query: 202 RFLKEKNPN-IKVYGVEPTESAMLNGGQPGR 231
R LK N +K+ VEP +S +L+GGQPG+
Sbjct: 176 RVLKGFFGNGVKIVAVEPAKSPVLSGGQPGK 206
>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
Length = 303
Score = 144 bits (362), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 119/211 (56%), Gaps = 9/211 (4%)
Query: 22 QLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVL 81
+LIG+TP+V L D +RI KLE P SVKDR AL MI DAE++GL+ G +
Sbjct: 16 RLIGSTPIVRL----DSIDSRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG---I 68
Query: 82 IETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILR 141
+E T GN GI +A I A RG+++I+ MP S+ERR VL+ LGAE+ L G +G +
Sbjct: 69 VEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVE 128
Query: 142 KGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXXXXXXXXX 201
K EI S M QFENP N H TTGPEI K +D VA
Sbjct: 129 KALEI-SRETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVG 187
Query: 202 RFLKEKNPN-IKVYGVEPTESAMLNGGQPGR 231
R LK N +K+ VEP +S +L+GGQPG+
Sbjct: 188 RVLKGFFGNGVKIVAVEPAKSPVLSGGQPGK 218
>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
pdb|3DWG|B Chain B, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
Length = 325
Score = 136 bits (343), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 110/204 (53%), Gaps = 9/204 (4%)
Query: 22 QLIGNTPMVYLNNVV-------DGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLI 74
Q +GNTP+V L + DG R+ AKLE P S+KDR A+ MI+ AE GL+
Sbjct: 11 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 70
Query: 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG 134
PG ++L E T GNTGI LA A L+GY+LI VMP S+ERR +L GA++ + G
Sbjct: 71 RPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 129
Query: 135 GFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXX 194
G + +E+ + P+ M Q+ NPAN HY TGPE+ D ++ VA
Sbjct: 130 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 188
Query: 195 XXXXXXXRFLKEKNPNIKVYGVEP 218
RFL+E N+K+ EP
Sbjct: 189 GTLMGTGRFLREHVANVKIVAAEP 212
>pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
pdb|3DWI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
Length = 323
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 109/204 (53%), Gaps = 9/204 (4%)
Query: 22 QLIGNTPMVYLNNVV-------DGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLI 74
Q +GNTP+V L + DG R+ AKLE P S+KDR A+ MI+ AE GL+
Sbjct: 9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 68
Query: 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG 134
PG ++L E T GNTGI LA A L+GY+LI VMP S+ERR +L GA++ + G
Sbjct: 69 RPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 127
Query: 135 GFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXX 194
G + +E+ + P+ M Q+ NPAN HY TGPE+ D ++ VA
Sbjct: 128 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 186
Query: 195 XXXXXXXRFLKEKNPNIKVYGVEP 218
RFL+E N+ + EP
Sbjct: 187 GTLMGTGRFLREHVANVAIVAAEP 210
>pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3DKI|B Chain B, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3FGP|A Chain A, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
pdb|3FGP|B Chain B, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
Length = 326
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 109/204 (53%), Gaps = 9/204 (4%)
Query: 22 QLIGNTPMVYLNNVV-------DGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLI 74
Q +GNTP+V L + DG R+ AKLE P S+ DR A+ MI+ AE GL+
Sbjct: 12 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIXDRPAVRMIEQAEADGLL 71
Query: 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG 134
PG ++L E T GNTGI LA A L+GY+LI VMP S+ERR +L GA++ + G
Sbjct: 72 RPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 130
Query: 135 GFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXX 194
G + +E+ + P+ M Q+ NPAN HY TGPE+ D ++ VA
Sbjct: 131 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 189
Query: 195 XXXXXXXRFLKEKNPNIKVYGVEP 218
RFL+E N+K+ EP
Sbjct: 190 GTLMGTGRFLREHVANVKIVAAEP 213
>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
pdb|3BM5|B Chain B, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
Length = 338
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 122/223 (54%), Gaps = 7/223 (3%)
Query: 13 KRAIKKDATQLIGNTPMVYLNNVVDGCV----ARIAAKLEMMEPCCSVKDRIALSMIKDA 68
++ I + + IG TP+V L+ V + RI KLE P SVKDR+ +++ A
Sbjct: 9 RKRIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQA 68
Query: 69 EEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128
+ G + PG + IE+T GNTGI L A+ GY++ I MPS S+ER+++++A GAE+
Sbjct: 69 IKDGRLKPGMEI-IESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELI 127
Query: 129 LADQAGGFEGILRKGEEILSNTPNG-FMFRQFENPANPKIHYETTGPEIWKDSGGDVDIL 187
L + G G + + +++ P F+ QF NP N H+ T EIW+D+ G+VDI+
Sbjct: 128 LTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIV 186
Query: 188 VAXXXXXXXXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
V+ LKEK IK+ VEP ESA+L G G
Sbjct: 187 VSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKG 229
>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
pdb|2PQM|B Chain B, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
Length = 343
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 122/223 (54%), Gaps = 7/223 (3%)
Query: 13 KRAIKKDATQLIGNTPMVYLNNVVDGCV----ARIAAKLEMMEPCCSVKDRIALSMIKDA 68
++ I + + IG TP+V L+ V + RI KLE P SVKDR+ +++ A
Sbjct: 10 RKRIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQA 69
Query: 69 EEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128
+ G + PG + IE+T GNTGI L A+ GY++ I MPS S+ER+++++A GAE+
Sbjct: 70 IKDGRLKPGMEI-IESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELI 128
Query: 129 LADQAGGFEGILRKGEEILSNTPNG-FMFRQFENPANPKIHYETTGPEIWKDSGGDVDIL 187
L + G G + + +++ P F+ QF NP N H+ T EIW+D+ G+VDI+
Sbjct: 129 LTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIV 187
Query: 188 VAXXXXXXXXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
V+ LKEK IK+ VEP ESA+L G G
Sbjct: 188 VSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKG 230
>pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|1WKV|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|3VSA|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
pdb|3VSA|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
Length = 389
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 42 RIAAKLEMMEP-CCSVKDRIALSMIKDAE---EKGLITPGKSVLIETTGGNTGIGLAFIA 97
R+ KLE P SVKDR A+ +I EKG S++ + T N G+ L+ +A
Sbjct: 111 RVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVEKG------SLVADATSSNFGVALSAVA 164
Query: 98 ALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPN-GFM- 155
L GY+ + +P A +++ R LGA+V + +A +L + ++ ++ N GF+
Sbjct: 165 RLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPR---VMKDSKNEGFVH 221
Query: 156 FRQFENPANPKIHYETTGPEIWKDS--GGDVDILVAXXXXXXXXXXXXRF-LKEKNPNIK 212
QF N AN + H T EI+ S GG VA F L+ +P+I+
Sbjct: 222 VNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIR 281
Query: 213 VYGVEPTESAMLNG 226
V+P + + G
Sbjct: 282 AVLVQPAQGDSIPG 295
>pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSC|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSD|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
pdb|3VSD|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
Length = 389
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 18/194 (9%)
Query: 42 RIAAKLEMMEP-CCSVKDRIALSMIKDAE---EKGLITPGKSVLIETTGGNTGIGLAFIA 97
R+ KLE P SV DR A+ +I EKG S++ + T N G+ L+ +A
Sbjct: 111 RVWLKLEWYNPFSLSVADRPAVEIISRLSRRVEKG------SLVADATSSNFGVALSAVA 164
Query: 98 ALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPN-GFM- 155
L GY+ + +P A +++ R LGA+V + +A +L + ++ ++ N GF+
Sbjct: 165 RLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPR---VMKDSKNEGFVH 221
Query: 156 FRQFENPANPKIHYETTGPEIWKDS--GGDVDILVAXXXXXXXXXXXXRF-LKEKNPNIK 212
QF N AN + H T EI+ S GG VA F L+ +P+I+
Sbjct: 222 VNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIR 281
Query: 213 VYGVEPTESAMLNG 226
V+P + + G
Sbjct: 282 AVLVQPAQGDSIPG 295
>pdb|1VE5|A Chain A, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|B Chain B, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|C Chain C, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|D Chain D, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
Length = 311
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 48 EMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIV 107
E ++ S K R ALS K L L+ + GN G+A+ A + G K ++V
Sbjct: 42 EHLQKTGSFKARGALS-------KALALENPKGLLAVSSGNHAQGVAYAAQVLGVKALVV 94
Query: 108 MPSIASMERRIVLRALGAEV 127
MP AS ++ RA GAEV
Sbjct: 95 MPEDASPYKKACARAYGAEV 114
>pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli
Length = 514
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 14 RAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGL 73
RA +A Q+ M L++ +D I K E +P S K R A +M+ GL
Sbjct: 22 RAPVYEAAQVTPLQKMEKLSSRLDNV---ILVKREDRQPVHSFKLRGAYAMMA-----GL 73
Query: 74 ITPGKSV-LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129
K+ +I + GN G+AF +A G K +IVMP+ + + +R G EV L
Sbjct: 74 TEEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLL 130
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 8/177 (4%)
Query: 46 KLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLI 105
K E+ + S K R AL+ ++ L K+V+ ++G N G L + A L G
Sbjct: 45 KCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSSG-NHGQALTYAAKLEGIPAY 103
Query: 106 IVMPSIASMERRIVLRALGAE-VYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPAN 164
IV+P A +++ ++A GA VY E + ++ ++ G M + PA
Sbjct: 104 IVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAKR----VTEETEGIMVHPNQEPA- 158
Query: 165 PKIHYETTGPEIWKDSGGDVDILVAXXXXXXXXXXXXRFLKEKNPNIKVYGVEPTES 221
I + T + VD LV +K P++KVY EP+ +
Sbjct: 159 -VIAGQGTIALEVLNQVPLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNA 214
>pdb|3HMK|A Chain A, Crystal Structure Of Serine Racemase
pdb|3HMK|B Chain B, Crystal Structure Of Serine Racemase
pdb|3L6C|A Chain A, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
pdb|3L6C|B Chain B, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
Length = 339
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 6/176 (3%)
Query: 46 KLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLI 105
K E+ + S K R AL+ I+ L K+V+ ++G N G L + A L G
Sbjct: 45 KCELFQKTGSFKIRGALNAIRGLIPDTLEGKPKAVVTHSSG-NHGQALTYAAKLEGIPAY 103
Query: 106 IVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANP 165
IV+P A +++ ++A GA + ++ + E + I+ T G + + PA
Sbjct: 104 IVVPQTAPNCKKLAIQAYGASIVYSEPSD--ESRENVAQRIIQET-EGILVHPNQEPA-- 158
Query: 166 KIHYETTGPEIWKDSGGDVDILVAXXXXXXXXXXXXRFLKEKNPNIKVYGVEPTES 221
I + T + VD LV +K P++KVY EP+ +
Sbjct: 159 VIAGQGTIALEVLNQVPLVDALVVPVGGGGMVAGIAITIKTLKPSVKVYAAEPSNA 214
>pdb|4D9K|A Chain A, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|D Chain D, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|B Chain B, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|C Chain C, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
Length = 398
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131
K TT GN G G+A+ A G +I MP ++ ER + LGAE + D
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9M|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
pdb|4D9M|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
Length = 398
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131
K TT GN G G+A+ A G +I MP ++ ER + LGAE + D
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9I|A Chain A, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9I|B Chain B, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9N|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
pdb|4D9N|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
Length = 398
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131
K TT GN G G+A+ A G +I MP ++ ER + LGAE + D
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9G|A Chain A, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
pdb|4D9G|B Chain B, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
Length = 398
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131
K TT GN G G+A+ A G +I P ++ ER + LGAE + D
Sbjct: 112 KXTFATTTDGNHGRGVAWAAQQLGQNAVIYXPKGSAQERVDAILNLGAECIVTD 165
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 32.7 bits (73), Expect = 0.18, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRA 122
+G + PG+SVLI + G G IA RG + V ++ S E+R L+A
Sbjct: 1662 RGRMQPGESVLIHSGSGGVGQAAIAIALSRGCR---VFTTVGSAEKRAYLQA 1710
>pdb|2GN0|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|C Chain C, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|D Chain D, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN1|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN1|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN2|A Chain A, Crystal Structure Of Tetrameric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium In Complex
With Cmp At 2.5a Resolution (Hexagonal Form)
Length = 342
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 80/208 (38%), Gaps = 23/208 (11%)
Query: 17 KKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIA---LSMIKDAEE-KG 72
KK I T M N + C I K E M+ S R A LS + +AE+ KG
Sbjct: 31 KKRLAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFXIRGAFNKLSSLTEAEKRKG 90
Query: 73 LITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132
++ + GN G++ A+ G +VMP A + AEV L
Sbjct: 91 VVA--------CSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVL--H 140
Query: 133 AGGFEGILRKGEEILSNTPNGFMFRQFENPA-NPKI--HYETTGPEIWKDSGGDVDILVA 189
F + K EI+ R F P +PK+ T G EI +D DVD ++
Sbjct: 141 GDNFNDTIAKVSEIVETEG-----RIFIPPYDDPKVIAGQGTIGLEIMEDL-YDVDNVIV 194
Query: 190 XXXXXXXXXXXXRFLKEKNPNIKVYGVE 217
+K NP IKV GV+
Sbjct: 195 PIGGGGLIAGIAIAIKSINPTIKVIGVQ 222
>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For
Conformational Changes Upon Inhibitor Binding
Length = 346
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 8/177 (4%)
Query: 46 KLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLI 105
K E+ + S R AL+ ++ L K+V+ ++G N G L + A L G
Sbjct: 45 KCELFQKTGSFXIRGALNAVRSLVPDALERKPKAVVTHSSG-NHGQALTYAAKLEGIPAY 103
Query: 106 IVMPSIASMERRIVLRALGAE-VYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPAN 164
IV+P A +++ ++A GA VY E + ++ ++ G + PA
Sbjct: 104 IVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAKR----VTEETEGIXVHPNQEPA- 158
Query: 165 PKIHYETTGPEIWKDSGGDVDILVAXXXXXXXXXXXXRFLKEKNPNIKVYGVEPTES 221
I + T + VD LV +K P++KVY EP+ +
Sbjct: 159 -VIAGQGTIALEVLNQVPLVDALVVPVGGGGXLAGIAITVKALKPSVKVYAAEPSNA 214
>pdb|3SS7|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.55 A Resolution
pdb|3SS9|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.97 A Resolution
Length = 442
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 79 SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEG 138
S+ + +TG N G+ + ++A G+K+ + M + A ++ LR+ G V +Q G
Sbjct: 162 SIAVGSTG-NLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVA- 219
Query: 139 ILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEI 176
+ +G + + PN F F EN + Y G +
Sbjct: 220 -VEEGRKAAQSDPNCF-FIDDENSRTLFLGYSVAGQRL 255
>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine Synthase
pdb|2D1F|B Chain B, Structure Of Mycobacterium Tuberculosis Threonine Synthase
Length = 360
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 21 TQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSV 80
T L G TP++ N+ I K+E + P S KDR + DA G ++V
Sbjct: 33 TLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ----RAV 88
Query: 81 LIETTGGNTGIGLAFIAALRGYKLIIVMP 109
L +T GNT A AA G +++P
Sbjct: 89 LCAST-GNTSASAAAYAARAGITCAVLIP 116
>pdb|1V71|A Chain A, Crystal Structure Of S.pombe Serine Racemase
pdb|1WTC|A Chain A, Crystal Structure Of S.ponbe Serine Racemase Complex With
Amppcp
pdb|2ZPU|A Chain A, Crystal Structure Of Modified Serine Racemase From
S.Pombe.
pdb|2ZR8|A Chain A, Crystal Structure Of Modified Serine Racemase Complexed
With Serine
Length = 323
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 78/197 (39%), Gaps = 9/197 (4%)
Query: 22 QLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVL 81
+ TP++ + V VA + K E + + K R AL+ + E K+ +
Sbjct: 22 KFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNE----AQRKAGV 77
Query: 82 IETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILR 141
+ + GN +A A + G I+MP A + + G +V + D+ ++
Sbjct: 78 LTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDR---YKDDRE 134
Query: 142 KGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXXXXXXXXX 201
K + +S + +++P + T E++++ G +D L
Sbjct: 135 KMAKEISEREGLTIIPPYDHP-HVLAGQGTAAKELFEEV-GPLDALFVCLGGGGLLSGSA 192
Query: 202 RFLKEKNPNIKVYGVEP 218
+ PN +VYGVEP
Sbjct: 193 LAARHFAPNCEVYGVEP 209
>pdb|3R0Z|A Chain A, Crystal Structure Of Apo D-Serine Deaminase From
Salmonella Typhimurium
Length = 448
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 79 SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEG 138
S+ + +TG N G+ + ++A G+K+ + M + A ++ LR+ G V + G
Sbjct: 160 SIAVGSTG-NLGLSIGIMSACIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEDDYGVA- 217
Query: 139 ILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEI 176
+ +G + + PN F F EN + Y G +
Sbjct: 218 -VEQGRKAAQSDPNCF-FIDDENSRTLFLGYAVAGQRL 253
>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3UOG|B Chain B, Crystal Structure Of Putative Alcohol Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 363
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 52 PCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSI 111
PC + AL EKG + G V+++ TGG GL IA G ++I+ S
Sbjct: 171 PCAGLTAWFALV------EKGHLRAGDRVVVQGTGGVALFGLQ-IAKATGAEVIVTSSSR 223
Query: 112 ASMERRIVLRA 122
++R L A
Sbjct: 224 EKLDRAFALGA 234
>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester
Reductase (Cgi- 63)
Length = 357
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 14/86 (16%)
Query: 50 MEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVM- 108
+ PC + + M+ D E+ + PG SV+ + G + IAA G + I V+
Sbjct: 150 VNPCTAYR------MLMDFEQ---LQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVR 200
Query: 109 --PSIASMERRIVLRALGAEVYLADQ 132
P I + R L++LGAE + ++
Sbjct: 201 DRPDIQKLSDR--LKSLGAEHVITEE 224
>pdb|1PQW|A Chain A, Putative Enoyl Reductase Domain Of Polyketide Synthase
pdb|1PQW|B Chain B, Putative Enoyl Reductase Domain Of Polyketide Synthase
Length = 198
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129
E G ++PG+ VLI + G G+ IA + G + + + S +R +L LG E Y+
Sbjct: 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGAR---IYTTAGSDAKREMLSRLGVE-YV 87
Query: 130 ADQ 132
D
Sbjct: 88 GDS 90
>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
pdb|2VCY|B Chain B, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
Length = 344
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 14/86 (16%)
Query: 50 MEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVM- 108
+ PC + + M+ D E+ + PG SV+ + G + IAA G + I V+
Sbjct: 137 VNPCTAYR------MLMDFEQ---LQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVR 187
Query: 109 --PSIASMERRIVLRALGAEVYLADQ 132
P I + R L++LGAE + ++
Sbjct: 188 DRPDIQKLSDR--LKSLGAEHVITEE 211
>pdb|3IAU|A Chain A, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
pdb|3IAU|B Chain B, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
Length = 366
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 55/145 (37%), Gaps = 5/145 (3%)
Query: 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGIL 140
+I + GN G+A IVMP+ + +RALG +V L + F+
Sbjct: 111 VITASAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKT--FDEAQ 168
Query: 141 RKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXXXXXXXX 200
E LS F++P K T G EI + D+ +
Sbjct: 169 THALE-LSEKDGLKYIPPFDDPGVIK-GQGTIGTEINRQLK-DIHAVFIPVGGGGLIAGV 225
Query: 201 XRFLKEKNPNIKVYGVEPTESAMLN 225
F K+ PN K+ GVEP +A +
Sbjct: 226 ATFFKQIAPNTKIIGVEPYGAASMT 250
>pdb|3KRT|A Chain A, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|B Chain B, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|C Chain C, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|D Chain D, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
Length = 456
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 23/112 (20%)
Query: 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGF 136
G +VLI G G A G I V ++S ++ + RA+GAE
Sbjct: 229 GDNVLIWGASGGLGSYATQFALAGGANPICV---VSSPQKAEICRAMGAEA--------- 276
Query: 137 EGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGG-DVDIL 187
I+ G+ F + EN +PK ++ G I + +GG D+DI+
Sbjct: 277 ---------IIDRNAEGYRFWKDENTQDPK-EWKRFGKRIRELTGGEDIDIV 318
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,813,940
Number of Sequences: 62578
Number of extensions: 257918
Number of successful extensions: 852
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 744
Number of HSP's gapped (non-prelim): 63
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)