Query 025563
Match_columns 251
No_of_seqs 137 out of 1210
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 07:07:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025563.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025563hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0031 CysK Cysteine synthase 100.0 3.7E-58 8E-63 397.5 26.0 227 18-246 3-231 (300)
2 PLN03013 cysteine synthase 100.0 1.4E-55 3E-60 400.8 27.9 232 15-246 112-343 (429)
3 PLN02565 cysteine synthase 100.0 8.3E-55 1.8E-59 387.2 27.5 231 15-245 4-234 (322)
4 PLN02556 cysteine synthase/L-3 100.0 6.4E-54 1.4E-58 387.1 26.9 231 16-246 49-279 (368)
5 PLN00011 cysteine synthase 100.0 1.5E-52 3.2E-57 373.4 28.2 234 12-245 3-236 (323)
6 KOG1252 Cystathionine beta-syn 100.0 6.4E-54 1.4E-58 370.1 18.3 234 14-247 40-278 (362)
7 TIGR01136 cysKM cysteine synth 100.0 9.4E-52 2E-56 364.9 27.7 225 21-246 2-226 (299)
8 TIGR01139 cysK cysteine syntha 100.0 1.6E-51 3.6E-56 363.2 27.5 224 21-246 2-226 (298)
9 PRK11761 cysM cysteine synthas 100.0 9.8E-52 2.1E-56 364.0 25.7 208 16-225 2-209 (296)
10 TIGR01138 cysM cysteine syntha 100.0 9.4E-51 2E-55 356.9 26.7 217 20-245 2-218 (290)
11 COG1171 IlvA Threonine dehydra 100.0 2.4E-51 5.2E-56 361.0 21.2 212 7-225 6-217 (347)
12 PRK10717 cysteine synthase A; 100.0 7.2E-50 1.6E-54 357.4 27.6 227 17-244 4-243 (330)
13 cd01561 CBS_like CBS_like: Thi 100.0 1.2E-49 2.5E-54 350.3 27.9 220 25-245 1-222 (291)
14 PLN02356 phosphateglycerate ki 100.0 1E-49 2.2E-54 362.3 26.7 231 15-246 42-330 (423)
15 PRK08198 threonine dehydratase 100.0 8.3E-50 1.8E-54 366.0 25.1 208 9-225 5-212 (404)
16 PRK08526 threonine dehydratase 100.0 7.5E-50 1.6E-54 364.7 24.6 209 8-225 2-210 (403)
17 PRK07476 eutB threonine dehydr 100.0 7.9E-50 1.7E-54 355.9 23.3 208 9-225 2-209 (322)
18 PRK08638 threonine dehydratase 100.0 1.3E-49 2.9E-54 355.3 23.5 223 9-240 10-237 (333)
19 PRK06382 threonine dehydratase 100.0 1.5E-49 3.2E-54 364.1 23.9 224 9-241 8-240 (406)
20 PRK06110 hypothetical protein; 100.0 2.7E-49 5.8E-54 352.5 24.5 210 7-225 2-211 (322)
21 PLN02970 serine racemase 100.0 2.7E-49 6E-54 353.1 24.4 208 9-225 10-217 (328)
22 TIGR01137 cysta_beta cystathio 100.0 8.2E-49 1.8E-53 364.3 25.4 227 18-245 3-237 (454)
23 PRK07334 threonine dehydratase 100.0 2.8E-49 6.1E-54 362.0 21.4 225 6-239 3-234 (403)
24 TIGR02991 ectoine_eutB ectoine 100.0 1.4E-48 3E-53 347.0 24.7 208 9-225 2-209 (317)
25 PRK07048 serine/threonine dehy 100.0 1.1E-48 2.3E-53 348.6 23.6 210 6-224 4-213 (321)
26 PRK08639 threonine dehydratase 100.0 1.2E-48 2.5E-53 359.5 23.8 228 9-242 8-247 (420)
27 PRK06608 threonine dehydratase 100.0 1.5E-48 3.3E-53 349.2 23.9 207 9-224 6-212 (338)
28 PRK08246 threonine dehydratase 100.0 3.7E-48 8.1E-53 343.3 24.1 217 7-238 4-224 (310)
29 TIGR02079 THD1 threonine dehyd 100.0 2.1E-48 4.6E-53 356.4 22.8 228 11-244 1-238 (409)
30 PRK06815 hypothetical protein; 100.0 2.6E-48 5.5E-53 345.5 22.6 225 10-243 4-237 (317)
31 cd01562 Thr-dehyd Threonine de 100.0 3.3E-48 7.3E-53 342.8 22.9 207 10-225 1-207 (304)
32 cd06448 L-Ser-dehyd Serine deh 100.0 5.4E-48 1.2E-52 343.0 22.7 215 26-244 1-227 (316)
33 PRK12483 threonine dehydratase 100.0 9.7E-48 2.1E-52 358.8 24.5 199 19-225 30-228 (521)
34 cd06447 D-Ser-dehyd D-Serine d 100.0 1.2E-47 2.7E-52 348.5 24.5 213 9-224 19-286 (404)
35 PRK02991 D-serine dehydratase; 100.0 3.6E-47 7.8E-52 349.2 25.5 220 3-225 36-310 (441)
36 TIGR01127 ilvA_1Cterm threonin 100.0 2.6E-47 5.6E-52 347.0 21.3 190 27-225 1-190 (380)
37 TIGR02035 D_Ser_am_lyase D-ser 100.0 1.5E-46 3.2E-51 344.0 26.2 233 9-244 37-339 (431)
38 PRK08813 threonine dehydratase 100.0 1.3E-46 2.8E-51 336.3 25.1 213 8-239 21-241 (349)
39 PRK06352 threonine synthase; V 100.0 2.9E-47 6.3E-52 342.8 20.5 216 4-229 3-227 (351)
40 PLN02550 threonine dehydratase 100.0 9E-47 2E-51 354.5 23.4 199 19-225 102-300 (591)
41 TIGR01124 ilvA_2Cterm threonin 100.0 1.4E-46 3E-51 350.9 23.8 200 19-226 10-209 (499)
42 PRK08197 threonine synthase; V 100.0 1E-46 2.2E-51 344.2 21.5 212 5-225 55-278 (394)
43 PRK07591 threonine synthase; V 100.0 2.1E-46 4.5E-51 344.3 22.4 213 5-225 66-289 (421)
44 PRK09224 threonine dehydratase 100.0 3.6E-46 7.8E-51 349.2 24.1 200 18-225 12-211 (504)
45 PRK06381 threonine synthase; V 100.0 5.5E-46 1.2E-50 330.9 23.7 195 22-225 11-214 (319)
46 KOG1250 Threonine/serine dehyd 100.0 1.6E-46 3.4E-51 329.2 18.4 208 10-225 50-257 (457)
47 PRK06721 threonine synthase; R 100.0 9.5E-46 2.1E-50 333.2 23.1 214 4-227 3-225 (352)
48 PRK07409 threonine synthase; V 100.0 8.3E-46 1.8E-50 333.9 22.3 215 5-229 7-231 (353)
49 PRK05638 threonine synthase; V 100.0 9.8E-46 2.1E-50 342.2 22.1 209 5-225 44-259 (442)
50 PRK06260 threonine synthase; V 100.0 8.4E-46 1.8E-50 338.5 21.2 211 5-225 45-265 (397)
51 cd01563 Thr-synth_1 Threonine 100.0 1.5E-45 3.3E-50 328.7 21.3 198 18-225 14-219 (324)
52 PRK08329 threonine synthase; V 100.0 2E-45 4.4E-50 330.5 22.0 223 5-244 41-272 (347)
53 PLN02569 threonine synthase 100.0 6.3E-45 1.4E-49 337.8 23.2 230 6-240 109-363 (484)
54 PRK08206 diaminopropionate amm 100.0 7.3E-45 1.6E-49 331.9 23.1 213 9-225 25-271 (399)
55 PRK06450 threonine synthase; V 100.0 2E-44 4.4E-49 322.3 23.1 186 19-225 51-243 (338)
56 cd00640 Trp-synth-beta_II Tryp 100.0 2.1E-43 4.7E-48 303.0 24.6 187 27-218 1-188 (244)
57 KOG1251 Serine racemase [Signa 100.0 2.8E-44 6.1E-49 297.7 17.7 208 6-222 5-212 (323)
58 PRK12391 tryptophan synthase s 100.0 1.1E-42 2.3E-47 318.7 25.5 237 5-246 56-331 (427)
59 TIGR01415 trpB_rel pyridoxal-p 100.0 1.4E-42 3.1E-47 317.5 26.0 234 4-245 45-321 (419)
60 KOG1481 Cysteine synthase [Ami 100.0 5.5E-43 1.2E-47 294.9 16.6 225 19-244 42-292 (391)
61 TIGR01747 diampropi_NH3ly diam 100.0 4.7E-42 1E-46 310.7 22.4 211 10-225 7-250 (376)
62 TIGR03528 2_3_DAP_am_ly diamin 100.0 3E-42 6.6E-47 313.9 21.3 212 10-226 26-270 (396)
63 PRK13028 tryptophan synthase s 100.0 1.6E-41 3.5E-46 308.4 24.6 223 2-229 23-283 (402)
64 PRK13802 bifunctional indole-3 100.0 2.3E-41 5E-46 323.0 25.3 229 2-239 287-554 (695)
65 PRK04346 tryptophan synthase s 100.0 3.1E-41 6.7E-46 306.1 23.6 215 2-221 19-263 (397)
66 TIGR00260 thrC threonine synth 100.0 5.1E-42 1.1E-46 306.5 18.3 196 19-224 16-221 (328)
67 PLN02618 tryptophan synthase, 100.0 7.4E-41 1.6E-45 304.2 24.0 198 19-221 58-276 (410)
68 TIGR00263 trpB tryptophan synt 100.0 2.6E-40 5.7E-45 300.8 23.6 199 18-221 41-255 (385)
69 TIGR01275 ACC_deam_rel pyridox 100.0 2.8E-40 6.1E-45 293.3 21.1 193 23-222 4-208 (311)
70 PRK03910 D-cysteine desulfhydr 100.0 2.9E-40 6.3E-45 295.5 20.8 202 18-225 7-225 (331)
71 PF00291 PALP: Pyridoxal-phosp 100.0 5E-40 1.1E-44 290.1 21.6 210 20-241 1-231 (306)
72 cd06446 Trp-synth_B Tryptophan 100.0 2.3E-39 5.1E-44 293.0 23.8 206 15-225 22-243 (365)
73 TIGR03844 cysteate_syn cysteat 100.0 1.2E-39 2.6E-44 296.9 18.9 211 5-225 42-267 (398)
74 cd06449 ACCD Aminocyclopropane 100.0 2.4E-39 5.1E-44 286.9 20.3 193 27-225 1-216 (307)
75 TIGR01274 ACC_deam 1-aminocycl 100.0 4.9E-39 1.1E-43 288.2 21.6 203 17-225 5-230 (337)
76 PRK12390 1-aminocyclopropane-1 100.0 5.7E-39 1.2E-43 287.8 20.7 203 18-226 7-232 (337)
77 PRK13803 bifunctional phosphor 100.0 1.1E-38 2.3E-43 304.4 22.7 196 21-221 265-475 (610)
78 PRK14045 1-aminocyclopropane-1 100.0 1.2E-38 2.5E-43 284.8 19.9 199 16-220 11-221 (329)
79 COG0498 ThrC Threonine synthas 100.0 8.8E-33 1.9E-37 250.2 17.2 199 19-226 69-278 (411)
80 COG0133 TrpB Tryptophan syntha 100.0 1.7E-29 3.8E-34 216.8 17.5 197 20-221 49-260 (396)
81 COG1350 Predicted alternative 100.0 1.6E-27 3.5E-32 205.1 15.1 236 5-245 56-331 (432)
82 COG2515 Acd 1-aminocyclopropan 100.0 4.3E-27 9.4E-32 201.4 17.4 203 15-223 4-220 (323)
83 KOG1395 Tryptophan synthase be 99.9 1.6E-25 3.5E-30 194.4 12.5 207 9-220 104-327 (477)
84 PRK09225 threonine synthase; V 99.9 1.6E-22 3.5E-27 187.0 20.1 181 26-224 88-285 (462)
85 cd01560 Thr-synth_2 Threonine 99.9 1.3E-21 2.8E-26 181.0 22.1 181 26-220 87-284 (460)
86 COG3048 DsdA D-serine dehydrat 99.8 5.9E-19 1.3E-23 151.3 14.6 201 23-226 75-314 (443)
87 PF03808 Glyco_tran_WecB: Glyc 93.9 0.5 1.1E-05 38.2 8.9 120 90-216 13-133 (172)
88 cd06533 Glyco_transf_WecG_TagA 92.3 1.6 3.5E-05 35.2 9.5 121 90-218 11-133 (171)
89 TIGR00696 wecB_tagA_cpsF bacte 89.4 4 8.6E-05 33.3 9.2 118 90-216 13-132 (177)
90 PF05368 NmrA: NmrA-like famil 88.7 9.1 0.0002 31.9 11.4 51 81-132 2-52 (233)
91 PF00107 ADH_zinc_N: Zinc-bind 88.5 3.8 8.3E-05 30.7 8.1 40 90-132 3-42 (130)
92 COG0604 Qor NADPH:quinone redu 88.3 5.8 0.00013 35.5 10.4 58 71-131 137-194 (326)
93 cd08230 glucose_DH Glucose deh 88.2 4.1 8.9E-05 36.4 9.4 53 75-128 171-223 (355)
94 TIGR02819 fdhA_non_GSH formald 87.2 10 0.00022 34.7 11.5 56 70-128 179-234 (393)
95 KOG0025 Zn2+-binding dehydroge 87.1 5.8 0.00013 35.1 9.1 88 42-132 124-217 (354)
96 PRK07109 short chain dehydroge 86.9 22 0.00047 31.7 14.9 73 78-150 9-83 (334)
97 TIGR03201 dearomat_had 6-hydro 86.8 18 0.0004 32.1 12.8 57 70-130 160-216 (349)
98 cd08294 leukotriene_B4_DH_like 86.8 10 0.00022 33.1 11.0 59 70-131 137-195 (329)
99 KOG1201 Hydroxysteroid 17-beta 86.0 10 0.00022 33.6 10.1 75 76-151 37-113 (300)
100 TIGR03366 HpnZ_proposed putati 85.7 7.3 0.00016 33.6 9.3 53 74-129 118-170 (280)
101 TIGR00670 asp_carb_tr aspartat 84.9 6.3 0.00014 35.0 8.6 59 71-131 145-208 (301)
102 PRK10669 putative cation:proto 83.9 19 0.00041 34.6 12.1 51 80-133 419-469 (558)
103 KOG2862 Alanine-glyoxylate ami 83.8 19 0.00042 32.2 10.8 87 80-166 70-158 (385)
104 cd01075 NAD_bind_Leu_Phe_Val_D 83.8 14 0.0003 30.5 9.8 67 58-128 6-76 (200)
105 PRK12823 benD 1,6-dihydroxycyc 83.6 12 0.00026 31.5 9.6 72 78-150 9-82 (260)
106 COG2130 Putative NADP-dependen 83.5 9.7 0.00021 33.9 8.8 64 60-129 137-201 (340)
107 KOG0024 Sorbitol dehydrogenase 82.9 6.7 0.00014 35.2 7.7 63 67-132 160-222 (354)
108 PRK15408 autoinducer 2-binding 82.7 35 0.00076 30.5 17.2 147 63-218 71-243 (336)
109 PRK08643 acetoin reductase; Va 82.7 19 0.00042 30.1 10.5 54 78-131 3-57 (256)
110 PRK03659 glutathione-regulated 82.7 23 0.00049 34.6 12.1 51 80-133 402-452 (601)
111 PF00764 Arginosuc_synth: Argi 82.5 23 0.00051 32.6 11.4 126 82-215 2-138 (388)
112 PRK03562 glutathione-regulated 82.5 23 0.00049 34.7 12.1 51 80-133 402-452 (621)
113 cd08281 liver_ADH_like1 Zinc-d 82.3 19 0.00041 32.4 10.8 58 70-130 185-242 (371)
114 PRK09880 L-idonate 5-dehydroge 82.3 15 0.00034 32.5 10.2 54 74-130 167-220 (343)
115 COG1063 Tdh Threonine dehydrog 82.1 38 0.00082 30.5 13.4 51 80-132 171-222 (350)
116 TIGR02825 B4_12hDH leukotriene 82.1 21 0.00046 31.2 10.9 58 70-130 132-189 (325)
117 TIGR03451 mycoS_dep_FDH mycoth 81.8 19 0.00041 32.2 10.6 57 70-129 170-226 (358)
118 cd08256 Zn_ADH2 Alcohol dehydr 81.5 27 0.00058 30.9 11.4 58 70-130 168-225 (350)
119 PRK06935 2-deoxy-D-gluconate 3 81.2 18 0.00038 30.5 9.8 74 77-150 15-89 (258)
120 PRK05993 short chain dehydroge 81.0 20 0.00043 30.7 10.1 67 78-148 5-71 (277)
121 PRK06182 short chain dehydroge 80.9 23 0.00049 30.1 10.4 68 78-149 4-71 (273)
122 PF13433 Peripla_BP_5: Peripla 80.8 2.4 5.2E-05 38.6 4.3 117 119-251 128-248 (363)
123 PRK12481 2-deoxy-D-gluconate 3 80.7 18 0.0004 30.4 9.7 72 77-150 8-81 (251)
124 TIGR01064 pyruv_kin pyruvate k 80.4 53 0.0012 31.1 13.6 123 92-221 261-407 (473)
125 COG1064 AdhP Zn-dependent alco 80.3 13 0.00028 33.6 8.7 61 68-132 158-218 (339)
126 PRK08993 2-deoxy-D-gluconate 3 80.3 23 0.00049 29.8 10.1 71 78-149 11-82 (253)
127 cd08295 double_bond_reductase_ 80.3 25 0.00054 31.0 10.7 56 71-129 146-202 (338)
128 PRK12743 oxidoreductase; Provi 80.1 14 0.0003 31.1 8.7 73 78-150 3-78 (256)
129 PRK08703 short chain dehydroge 80.0 26 0.00056 29.0 10.3 32 78-109 7-38 (239)
130 PF00070 Pyr_redox: Pyridine n 79.9 17 0.00036 24.9 7.7 50 81-130 2-60 (80)
131 cd08233 butanediol_DH_like (2R 79.3 34 0.00074 30.2 11.4 59 70-131 166-224 (351)
132 PF01210 NAD_Gly3P_dh_N: NAD-d 79.2 4.1 9E-05 32.2 4.8 39 81-122 2-40 (157)
133 PF09837 DUF2064: Uncharacteri 78.8 26 0.00057 26.6 9.5 98 93-196 2-100 (122)
134 PRK08589 short chain dehydroge 78.8 18 0.00039 30.9 9.1 73 77-150 6-80 (272)
135 cd08274 MDR9 Medium chain dehy 78.7 24 0.00052 31.0 10.2 57 69-129 170-226 (350)
136 PRK12828 short chain dehydroge 78.6 22 0.00048 29.1 9.4 71 77-148 7-78 (239)
137 PRK08628 short chain dehydroge 78.1 26 0.00055 29.4 9.8 72 78-149 8-80 (258)
138 PRK08226 short chain dehydroge 78.1 22 0.00047 30.0 9.3 72 78-149 7-79 (263)
139 COG1751 Uncharacterized conser 77.9 24 0.00053 28.1 8.5 76 52-132 7-91 (186)
140 PRK07062 short chain dehydroge 77.4 32 0.00069 29.0 10.2 34 77-110 8-41 (265)
141 TIGR01832 kduD 2-deoxy-D-gluco 77.4 29 0.00063 28.8 9.8 71 78-149 6-77 (248)
142 TIGR02822 adh_fam_2 zinc-bindi 77.2 13 0.00028 33.0 7.9 57 69-129 158-214 (329)
143 PF01041 DegT_DnrJ_EryC1: DegT 77.0 6.2 0.00013 35.6 5.9 87 80-166 42-130 (363)
144 PLN03154 putative allyl alcoho 76.9 35 0.00077 30.4 10.8 57 71-130 153-210 (348)
145 cd08293 PTGR2 Prostaglandin re 76.5 50 0.0011 29.0 11.6 59 71-132 147-209 (345)
146 PF00106 adh_short: short chai 76.5 26 0.00056 27.0 8.8 69 79-147 2-75 (167)
147 PLN02740 Alcohol dehydrogenase 76.4 33 0.00071 31.0 10.5 57 70-129 192-248 (381)
148 PRK09424 pntA NAD(P) transhydr 76.2 12 0.00026 35.7 7.8 53 76-132 164-216 (509)
149 PF04127 DFP: DNA / pantothena 76.1 15 0.00033 30.1 7.4 61 81-150 23-83 (185)
150 PRK13394 3-hydroxybutyrate deh 75.9 31 0.00067 28.8 9.7 54 78-131 8-62 (262)
151 PF00185 OTCace: Aspartate/orn 75.9 14 0.00031 29.3 7.1 45 87-131 13-65 (158)
152 PRK10309 galactitol-1-phosphat 75.3 37 0.00081 30.0 10.5 57 70-129 154-210 (347)
153 PRK12937 short chain dehydroge 75.2 37 0.0008 28.0 9.9 72 78-149 6-80 (245)
154 PRK14030 glutamate dehydrogena 74.8 22 0.00047 33.4 8.9 52 57-108 207-258 (445)
155 PRK07478 short chain dehydroge 74.8 25 0.00054 29.4 8.8 73 78-150 7-81 (254)
156 PRK03692 putative UDP-N-acetyl 74.7 27 0.00058 30.0 8.8 94 91-195 70-169 (243)
157 PF11760 CbiG_N: Cobalamin syn 74.6 8.5 0.00018 27.4 4.8 50 175-224 3-52 (84)
158 COG0623 FabI Enoyl-[acyl-carri 74.6 19 0.00042 30.8 7.7 12 196-207 122-133 (259)
159 PRK06079 enoyl-(acyl carrier p 74.6 22 0.00047 30.0 8.4 71 78-149 8-80 (252)
160 PF08659 KR: KR domain; Inter 74.6 25 0.00054 28.3 8.3 71 80-150 3-79 (181)
161 PRK06348 aspartate aminotransf 74.4 67 0.0014 29.0 12.4 82 81-163 92-175 (384)
162 PRK05557 fabG 3-ketoacyl-(acyl 74.0 41 0.00088 27.6 9.8 71 78-148 6-79 (248)
163 PRK08063 enoyl-(acyl carrier p 74.0 42 0.00091 27.8 10.0 72 78-149 5-79 (250)
164 PRK06463 fabG 3-ketoacyl-(acyl 73.8 49 0.0011 27.7 10.4 69 78-149 8-76 (255)
165 cd08292 ETR_like_2 2-enoyl thi 73.8 40 0.00086 29.1 10.1 56 70-128 133-188 (324)
166 PRK12771 putative glutamate sy 73.7 8.9 0.00019 36.9 6.4 55 75-130 135-207 (564)
167 TIGR02818 adh_III_F_hyde S-(hy 73.7 30 0.00064 31.1 9.5 57 70-129 179-235 (368)
168 cd00401 AdoHcyase S-adenosyl-L 73.6 15 0.00033 34.1 7.6 53 72-128 197-249 (413)
169 cd08301 alcohol_DH_plants Plan 73.6 29 0.00064 31.0 9.4 56 71-129 182-237 (369)
170 cd08287 FDH_like_ADH3 formalde 73.4 59 0.0013 28.5 11.2 54 71-127 163-216 (345)
171 PRK08303 short chain dehydroge 73.3 37 0.0008 29.8 9.7 73 77-150 8-93 (305)
172 cd08296 CAD_like Cinnamyl alco 73.3 47 0.001 29.2 10.5 53 73-129 160-212 (333)
173 cd08289 MDR_yhfp_like Yhfp put 73.3 34 0.00073 29.7 9.5 49 77-128 147-195 (326)
174 PRK08261 fabG 3-ketoacyl-(acyl 72.9 42 0.00091 31.0 10.5 72 77-149 210-281 (450)
175 PRK07454 short chain dehydroge 72.8 30 0.00065 28.6 8.7 72 78-149 7-80 (241)
176 cd08300 alcohol_DH_class_III c 72.6 25 0.00055 31.5 8.7 57 70-129 180-236 (368)
177 PRK08277 D-mannonate oxidoredu 72.6 38 0.00082 28.8 9.5 71 78-148 11-83 (278)
178 PRK06139 short chain dehydroge 72.6 27 0.00058 31.2 8.8 72 77-149 7-81 (330)
179 PRK07791 short chain dehydroge 72.5 40 0.00087 29.1 9.7 74 77-150 6-90 (286)
180 cd08297 CAD3 Cinnamyl alcohol 72.2 46 0.00099 29.2 10.2 54 73-129 162-215 (341)
181 PRK06483 dihydromonapterin red 72.2 49 0.0011 27.3 9.9 69 78-149 3-71 (236)
182 PRK07523 gluconate 5-dehydroge 72.1 36 0.00077 28.5 9.1 70 78-147 11-82 (255)
183 PRK05876 short chain dehydroge 72.0 32 0.0007 29.5 8.9 73 77-149 6-80 (275)
184 COG0800 Eda 2-keto-3-deoxy-6-p 71.9 59 0.0013 27.3 11.5 94 60-165 26-119 (211)
185 KOG1205 Predicted dehydrogenas 71.9 42 0.0009 29.6 9.5 72 78-150 13-89 (282)
186 PRK06194 hypothetical protein; 71.8 43 0.00094 28.5 9.7 72 78-149 7-80 (287)
187 cd08277 liver_alcohol_DH_like 71.8 31 0.00067 30.9 9.1 56 70-128 178-233 (365)
188 PRK06114 short chain dehydroge 71.5 56 0.0012 27.3 10.2 72 77-148 8-82 (254)
189 PRK12938 acetyacetyl-CoA reduc 71.5 35 0.00076 28.3 8.9 71 78-148 4-77 (246)
190 PF13561 adh_short_C2: Enoyl-( 70.8 18 0.0004 30.1 7.0 65 85-150 4-70 (241)
191 PRK08862 short chain dehydroge 70.6 35 0.00076 28.4 8.6 71 78-149 6-79 (227)
192 cd08258 Zn_ADH4 Alcohol dehydr 70.5 63 0.0014 28.0 10.6 54 71-126 159-212 (306)
193 PRK06128 oxidoreductase; Provi 70.4 54 0.0012 28.4 10.1 72 78-149 56-131 (300)
194 PRK05693 short chain dehydroge 70.2 62 0.0014 27.4 10.3 66 80-149 4-69 (274)
195 PRK10754 quinone oxidoreductas 70.2 73 0.0016 27.6 11.1 55 71-128 135-189 (327)
196 cd08242 MDR_like Medium chain 70.1 43 0.00093 29.0 9.4 57 69-129 148-204 (319)
197 PRK06841 short chain dehydroge 70.1 44 0.00095 27.9 9.2 33 78-110 16-48 (255)
198 cd08243 quinone_oxidoreductase 69.7 71 0.0015 27.3 10.7 55 72-129 138-192 (320)
199 cd08284 FDH_like_2 Glutathione 69.5 68 0.0015 28.0 10.7 53 72-127 163-215 (344)
200 cd08285 NADP_ADH NADP(H)-depen 69.3 68 0.0015 28.3 10.7 56 70-128 160-215 (351)
201 PRK08085 gluconate 5-dehydroge 69.2 44 0.00095 27.9 9.0 72 78-149 10-83 (254)
202 PRK05396 tdh L-threonine 3-deh 69.1 39 0.00085 29.7 9.0 52 75-129 162-213 (341)
203 cd08239 THR_DH_like L-threonin 68.8 81 0.0017 27.6 12.6 58 70-130 157-214 (339)
204 PRK13656 trans-2-enoyl-CoA red 68.6 97 0.0021 28.7 11.4 57 49-108 14-73 (398)
205 TIGR01751 crot-CoA-red crotony 68.6 39 0.00085 30.7 9.1 56 72-130 185-240 (398)
206 PRK07806 short chain dehydroge 68.3 65 0.0014 26.7 9.9 71 78-148 7-80 (248)
207 PF02310 B12-binding: B12 bind 68.2 30 0.00066 25.4 7.0 95 90-193 17-114 (121)
208 KOG0023 Alcohol dehydrogenase, 68.1 36 0.00078 30.7 8.2 60 69-132 175-234 (360)
209 PRK05866 short chain dehydroge 68.1 45 0.00098 28.9 9.1 72 78-149 41-114 (293)
210 PRK12744 short chain dehydroge 68.0 50 0.0011 27.7 9.1 71 78-148 9-85 (257)
211 PLN02827 Alcohol dehydrogenase 67.9 48 0.001 30.0 9.5 56 71-129 188-243 (378)
212 PRK05867 short chain dehydroge 67.9 41 0.00089 28.1 8.6 72 78-149 10-83 (253)
213 cd05211 NAD_bind_Glu_Leu_Phe_V 67.7 31 0.00068 29.0 7.6 53 59-111 4-56 (217)
214 PTZ00079 NADP-specific glutama 67.6 41 0.00088 31.7 8.9 53 57-110 216-269 (454)
215 PF07279 DUF1442: Protein of u 67.5 44 0.00096 28.2 8.3 59 64-125 31-94 (218)
216 cd08278 benzyl_alcohol_DH Benz 67.4 73 0.0016 28.5 10.5 57 71-130 181-237 (365)
217 TIGR01316 gltA glutamate synth 67.4 24 0.00053 32.9 7.6 54 77-131 272-330 (449)
218 PRK07666 fabG 3-ketoacyl-(acyl 67.3 50 0.0011 27.2 8.9 71 78-148 8-80 (239)
219 PRK12384 sorbitol-6-phosphate 67.1 74 0.0016 26.6 10.4 32 78-109 3-34 (259)
220 PRK12826 3-ketoacyl-(acyl-carr 67.1 53 0.0012 27.1 9.1 54 78-131 7-61 (251)
221 TIGR02853 spore_dpaA dipicolin 66.8 67 0.0015 28.2 9.9 84 37-126 110-196 (287)
222 PRK12935 acetoacetyl-CoA reduc 66.8 56 0.0012 27.0 9.2 71 78-148 7-80 (247)
223 cd08288 MDR_yhdh Yhdh putative 66.8 47 0.001 28.7 9.0 50 76-128 146-195 (324)
224 PRK08017 oxidoreductase; Provi 66.7 61 0.0013 26.9 9.4 59 79-141 4-62 (256)
225 PRK08278 short chain dehydroge 66.5 71 0.0015 27.2 9.9 71 78-148 7-86 (273)
226 PRK06138 short chain dehydroge 66.5 63 0.0014 26.7 9.4 71 78-149 6-78 (252)
227 cd05313 NAD_bind_2_Glu_DH NAD( 66.5 34 0.00074 29.6 7.7 52 58-109 18-69 (254)
228 PRK08936 glucose-1-dehydrogena 66.2 76 0.0016 26.6 10.0 72 77-149 7-82 (261)
229 COG0300 DltE Short-chain dehyd 66.1 45 0.00097 29.1 8.4 71 78-149 7-81 (265)
230 PTZ00354 alcohol dehydrogenase 65.8 88 0.0019 27.0 11.2 56 72-130 136-191 (334)
231 TIGR03590 PseG pseudaminic aci 65.8 69 0.0015 27.8 9.7 82 43-133 2-89 (279)
232 PRK06505 enoyl-(acyl carrier p 65.4 59 0.0013 27.8 9.2 72 78-150 8-83 (271)
233 PLN02918 pyridoxine (pyridoxam 65.4 54 0.0012 31.7 9.5 49 79-127 137-192 (544)
234 PRK06949 short chain dehydroge 65.4 54 0.0012 27.3 8.8 71 77-148 9-82 (258)
235 PF00091 Tubulin: Tubulin/FtsZ 65.3 25 0.00054 29.3 6.6 57 160-216 90-161 (216)
236 cd08246 crotonyl_coA_red croto 65.2 29 0.00063 31.4 7.6 54 73-129 190-243 (393)
237 TIGR00692 tdh L-threonine 3-de 65.1 61 0.0013 28.5 9.5 52 74-128 159-210 (340)
238 PF06039 Mqo: Malate:quinone o 65.0 7.7 0.00017 36.5 3.7 62 185-246 234-324 (488)
239 cd08269 Zn_ADH9 Alcohol dehydr 65.0 88 0.0019 26.7 11.4 57 70-129 123-179 (312)
240 cd05282 ETR_like 2-enoyl thioe 64.9 76 0.0017 27.3 10.0 54 71-127 133-186 (323)
241 cd08231 MDR_TM0436_like Hypoth 64.9 1E+02 0.0022 27.3 13.4 54 72-128 173-226 (361)
242 PRK12745 3-ketoacyl-(acyl-carr 64.7 78 0.0017 26.3 9.7 71 79-149 4-77 (256)
243 PRK06124 gluconate 5-dehydroge 64.7 57 0.0012 27.2 8.8 72 77-149 11-85 (256)
244 PRK08594 enoyl-(acyl carrier p 64.5 78 0.0017 26.7 9.7 72 78-150 8-85 (257)
245 PRK10538 malonic semialdehyde 64.5 61 0.0013 27.0 9.0 65 80-148 3-70 (248)
246 PRK08177 short chain dehydroge 64.4 78 0.0017 25.9 9.6 65 80-147 4-68 (225)
247 PRK07326 short chain dehydroge 64.4 70 0.0015 26.2 9.2 32 78-109 7-38 (237)
248 TIGR03206 benzo_BadH 2-hydroxy 64.0 58 0.0013 26.9 8.7 71 78-148 4-76 (250)
249 PRK07677 short chain dehydroge 63.8 64 0.0014 26.9 9.0 70 78-148 2-74 (252)
250 PRK07097 gluconate 5-dehydroge 63.8 89 0.0019 26.3 16.0 73 77-149 10-84 (265)
251 PRK07067 sorbitol dehydrogenas 63.7 62 0.0013 27.0 8.9 32 78-109 7-38 (257)
252 PRK06200 2,3-dihydroxy-2,3-dih 63.7 64 0.0014 27.1 9.0 69 78-150 7-78 (263)
253 COG0078 ArgF Ornithine carbamo 63.7 85 0.0018 28.0 9.6 56 77-132 153-214 (310)
254 TIGR00561 pntA NAD(P) transhyd 63.7 33 0.00071 32.9 7.7 50 80-132 166-215 (511)
255 PRK07904 short chain dehydroge 63.5 89 0.0019 26.3 9.9 69 78-147 9-83 (253)
256 PRK09134 short chain dehydroge 63.5 88 0.0019 26.2 10.1 54 78-131 10-65 (258)
257 PRK06172 short chain dehydroge 63.5 57 0.0012 27.2 8.6 54 78-131 8-62 (253)
258 PRK06198 short chain dehydroge 63.4 87 0.0019 26.1 9.8 71 78-148 7-80 (260)
259 PRK08265 short chain dehydroge 63.4 68 0.0015 27.0 9.2 69 78-149 7-77 (261)
260 PRK05786 fabG 3-ketoacyl-(acyl 63.2 83 0.0018 25.8 9.5 33 78-110 6-38 (238)
261 PRK12939 short chain dehydroge 62.9 52 0.0011 27.1 8.2 54 78-131 8-62 (250)
262 PRK08306 dipicolinate synthase 62.6 81 0.0018 27.7 9.6 48 77-128 152-199 (296)
263 PRK08217 fabG 3-ketoacyl-(acyl 62.6 76 0.0016 26.2 9.2 55 77-131 5-60 (253)
264 PRK08192 aspartate carbamoyltr 62.5 43 0.00093 30.3 7.9 54 77-131 159-218 (338)
265 PF01262 AlaDh_PNT_C: Alanine 62.5 34 0.00073 27.2 6.7 50 80-132 22-71 (168)
266 cd08240 6_hydroxyhexanoate_dh_ 62.4 1.1E+02 0.0024 26.9 10.9 52 74-128 173-224 (350)
267 PF02826 2-Hacid_dh_C: D-isome 62.3 80 0.0017 25.3 9.6 120 77-222 36-157 (178)
268 PRK06181 short chain dehydroge 62.3 73 0.0016 26.7 9.1 70 79-148 3-74 (263)
269 PRK07231 fabG 3-ketoacyl-(acyl 62.2 88 0.0019 25.7 9.5 33 78-110 6-38 (251)
270 PRK02610 histidinol-phosphate 62.1 52 0.0011 29.6 8.6 52 81-132 94-145 (374)
271 cd08291 ETR_like_1 2-enoyl thi 62.0 67 0.0015 28.0 9.1 52 78-132 144-196 (324)
272 PRK14807 histidinol-phosphate 61.9 54 0.0012 29.2 8.6 82 81-163 79-161 (351)
273 PRK07792 fabG 3-ketoacyl-(acyl 61.9 68 0.0015 28.0 9.1 56 77-132 12-69 (306)
274 PLN02702 L-idonate 5-dehydroge 61.8 84 0.0018 28.0 9.8 58 70-130 175-232 (364)
275 PRK05872 short chain dehydroge 61.7 69 0.0015 27.7 9.0 70 77-150 9-83 (296)
276 cd08298 CAD2 Cinnamyl alcohol 61.6 61 0.0013 28.2 8.7 54 70-127 161-214 (329)
277 PRK07550 hypothetical protein; 61.6 1.2E+02 0.0027 27.2 12.6 76 53-132 67-143 (386)
278 TIGR02415 23BDH acetoin reduct 61.4 74 0.0016 26.4 8.9 70 80-149 3-74 (254)
279 cd05279 Zn_ADH1 Liver alcohol 61.4 1.1E+02 0.0023 27.4 10.4 54 70-126 177-230 (365)
280 PRK11891 aspartate carbamoyltr 61.3 53 0.0011 30.8 8.4 54 77-131 241-300 (429)
281 PRK09147 succinyldiaminopimela 61.3 1.3E+02 0.0027 27.3 12.8 79 52-132 64-146 (396)
282 PRK06701 short chain dehydroge 61.3 1E+02 0.0022 26.7 10.0 71 78-148 47-120 (290)
283 PRK10083 putative oxidoreducta 61.1 1.1E+02 0.0023 26.8 10.3 58 69-129 153-211 (339)
284 PRK08213 gluconate 5-dehydroge 61.1 80 0.0017 26.4 9.1 71 78-148 13-85 (259)
285 TIGR01831 fabG_rel 3-oxoacyl-( 61.1 64 0.0014 26.5 8.4 70 81-150 2-74 (239)
286 PRK12429 3-hydroxybutyrate deh 61.0 93 0.002 25.7 9.5 71 78-148 5-77 (258)
287 PRK12831 putative oxidoreducta 61.0 39 0.00084 31.7 7.7 55 76-131 280-339 (464)
288 PRK06500 short chain dehydroge 59.9 98 0.0021 25.5 9.6 68 78-149 7-77 (249)
289 cd08282 PFDH_like Pseudomonas 59.8 73 0.0016 28.6 9.1 55 70-127 170-224 (375)
290 PLN02342 ornithine carbamoyltr 59.6 57 0.0012 29.6 8.2 60 71-131 189-251 (348)
291 PRK06953 short chain dehydroge 59.6 95 0.0021 25.3 10.1 51 80-133 4-54 (222)
292 cd08245 CAD Cinnamyl alcohol d 59.4 75 0.0016 27.6 8.9 55 72-130 158-212 (330)
293 PRK07035 short chain dehydroge 59.3 1E+02 0.0022 25.5 16.4 71 78-149 9-82 (252)
294 PRK06720 hypothetical protein; 59.3 90 0.002 24.9 9.5 72 78-150 17-91 (169)
295 PRK00779 ornithine carbamoyltr 59.1 47 0.001 29.5 7.5 60 71-131 147-209 (304)
296 PLN00175 aminotransferase fami 59.0 1.5E+02 0.0032 27.2 12.5 82 81-163 118-200 (413)
297 cd08299 alcohol_DH_class_I_II_ 59.0 75 0.0016 28.6 9.0 54 70-126 184-237 (373)
298 cd08261 Zn_ADH7 Alcohol dehydr 59.0 1.2E+02 0.0027 26.4 10.9 53 70-126 153-205 (337)
299 PRK06113 7-alpha-hydroxysteroi 58.9 90 0.002 26.0 9.1 70 78-148 12-84 (255)
300 PRK07985 oxidoreductase; Provi 58.8 91 0.002 27.0 9.3 72 78-149 50-125 (294)
301 PLN02527 aspartate carbamoyltr 58.8 69 0.0015 28.5 8.5 59 71-131 146-210 (306)
302 PF13460 NAD_binding_10: NADH( 58.5 52 0.0011 25.9 7.1 47 81-132 2-48 (183)
303 PRK05717 oxidoreductase; Valid 58.5 83 0.0018 26.2 8.8 70 77-149 10-81 (255)
304 COG2247 LytB Putative cell wal 58.5 39 0.00084 30.3 6.6 71 81-151 55-127 (337)
305 PRK07890 short chain dehydroge 58.3 95 0.0021 25.8 9.1 53 78-130 6-59 (258)
306 cd08267 MDR1 Medium chain dehy 58.3 82 0.0018 26.9 8.9 51 72-126 139-189 (319)
307 cd08262 Zn_ADH8 Alcohol dehydr 58.3 1E+02 0.0023 26.9 9.7 55 69-126 154-208 (341)
308 PLN02586 probable cinnamyl alc 58.2 71 0.0015 28.6 8.7 55 72-129 179-233 (360)
309 COG1922 WecG Teichoic acid bio 58.2 74 0.0016 27.6 8.2 120 90-217 72-194 (253)
310 TIGR00936 ahcY adenosylhomocys 58.1 57 0.0012 30.3 8.1 53 72-128 190-242 (406)
311 PLN02253 xanthoxin dehydrogena 58.0 76 0.0017 26.9 8.6 32 78-109 19-50 (280)
312 TIGR02824 quinone_pig3 putativ 57.8 1.2E+02 0.0026 25.8 10.9 57 70-129 133-189 (325)
313 TIGR01470 cysG_Nterm siroheme 57.7 63 0.0014 26.8 7.6 32 81-112 12-43 (205)
314 cd05188 MDR Medium chain reduc 57.5 1.1E+02 0.0023 25.3 9.8 52 72-127 130-181 (271)
315 cd05280 MDR_yhdh_yhfp Yhdh and 57.5 1E+02 0.0022 26.5 9.4 48 78-128 148-195 (325)
316 PRK09242 tropinone reductase; 57.3 1E+02 0.0022 25.7 9.2 72 78-149 10-85 (257)
317 PRK14031 glutamate dehydrogena 57.2 53 0.0012 30.9 7.7 53 57-109 207-259 (444)
318 PRK12742 oxidoreductase; Provi 57.2 1E+02 0.0022 25.2 9.0 55 77-133 6-61 (237)
319 PRK06947 glucose-1-dehydrogena 57.0 81 0.0018 26.1 8.4 70 79-148 4-76 (248)
320 PRK01688 histidinol-phosphate 57.0 65 0.0014 28.7 8.2 85 81-171 77-162 (351)
321 cd08259 Zn_ADH5 Alcohol dehydr 56.8 95 0.0021 26.7 9.1 53 72-127 158-210 (332)
322 PRK13376 pyrB bifunctional asp 56.8 51 0.0011 31.7 7.7 54 77-131 174-233 (525)
323 cd08279 Zn_ADH_class_III Class 56.8 1.4E+02 0.0031 26.5 11.0 53 71-126 177-229 (363)
324 cd05281 TDH Threonine dehydrog 56.8 85 0.0018 27.6 8.9 51 75-128 162-212 (341)
325 PRK06180 short chain dehydroge 56.7 86 0.0019 26.7 8.7 32 78-109 5-36 (277)
326 TIGR03538 DapC_gpp succinyldia 56.5 1.5E+02 0.0033 26.7 12.8 82 49-132 60-145 (393)
327 cd06324 PBP1_ABC_sugar_binding 56.5 1.3E+02 0.0028 25.9 19.5 78 138-219 159-240 (305)
328 COG2242 CobL Precorrin-6B meth 56.3 1.1E+02 0.0024 25.2 8.6 131 75-224 33-167 (187)
329 TIGR03325 BphB_TodD cis-2,3-di 56.3 89 0.0019 26.2 8.6 69 78-149 6-76 (262)
330 PRK08251 short chain dehydroge 56.3 1.1E+02 0.0024 25.2 9.2 72 78-149 3-78 (248)
331 COG0026 PurK Phosphoribosylami 56.2 72 0.0016 29.2 8.1 32 81-112 4-35 (375)
332 cd05286 QOR2 Quinone oxidoredu 56.1 1.2E+02 0.0027 25.5 10.9 56 71-129 131-186 (320)
333 PRK09422 ethanol-active dehydr 55.9 1.4E+02 0.003 26.0 10.1 57 70-130 156-213 (338)
334 PRK07063 short chain dehydroge 55.9 1E+02 0.0022 25.8 8.9 71 78-149 8-83 (260)
335 PRK06603 enoyl-(acyl carrier p 55.9 1.1E+02 0.0024 25.8 9.1 72 78-150 9-84 (260)
336 PRK05565 fabG 3-ketoacyl-(acyl 55.9 1.1E+02 0.0024 25.0 9.2 71 78-148 6-79 (247)
337 PRK07774 short chain dehydroge 55.8 1.1E+02 0.0023 25.3 8.9 71 78-149 7-80 (250)
338 cd08177 MAR Maleylacetate redu 55.5 1.5E+02 0.0033 26.4 10.9 104 106-219 4-110 (337)
339 cd05285 sorbitol_DH Sorbitol d 55.5 1.2E+02 0.0026 26.6 9.6 58 69-129 155-212 (343)
340 PRK08415 enoyl-(acyl carrier p 55.4 1.3E+02 0.0027 25.8 9.5 72 78-150 6-81 (274)
341 PRK09414 glutamate dehydrogena 55.4 58 0.0013 30.6 7.7 53 57-109 211-263 (445)
342 PRK07825 short chain dehydroge 55.3 96 0.0021 26.2 8.7 68 78-149 6-75 (273)
343 cd08249 enoyl_reductase_like e 55.3 85 0.0018 27.6 8.6 50 75-128 153-202 (339)
344 PRK08945 putative oxoacyl-(acy 55.1 1.2E+02 0.0026 25.1 9.4 73 77-149 12-89 (247)
345 PRK05653 fabG 3-ketoacyl-(acyl 55.1 1.1E+02 0.0025 24.8 9.6 54 78-131 6-60 (246)
346 PRK08416 7-alpha-hydroxysteroi 54.8 1.3E+02 0.0028 25.3 9.9 73 77-150 8-85 (260)
347 cd08550 GlyDH-like Glycerol_de 54.7 67 0.0015 28.8 7.9 34 183-219 77-110 (349)
348 PRK05854 short chain dehydroge 54.7 1.1E+02 0.0024 26.8 9.1 73 77-150 14-91 (313)
349 TIGR01963 PHB_DH 3-hydroxybuty 54.6 1E+02 0.0022 25.5 8.6 53 79-131 3-56 (255)
350 PRK09257 aromatic amino acid a 54.4 1.7E+02 0.0036 26.5 11.1 80 49-132 65-149 (396)
351 cd08250 Mgc45594_like Mgc45594 54.4 1.4E+02 0.0031 25.7 11.5 54 72-128 135-188 (329)
352 PF02887 PK_C: Pyruvate kinase 54.4 83 0.0018 23.3 7.2 66 81-150 21-87 (117)
353 PRK06077 fabG 3-ketoacyl-(acyl 54.3 84 0.0018 25.9 8.1 54 78-131 7-62 (252)
354 PRK12809 putative oxidoreducta 54.3 27 0.00058 34.3 5.6 53 77-130 310-380 (639)
355 TIGR02817 adh_fam_1 zinc-bindi 54.1 1.2E+02 0.0025 26.4 9.2 50 77-129 149-199 (336)
356 PRK11658 UDP-4-amino-4-deoxy-L 54.0 1.3E+02 0.0028 27.2 9.7 52 81-132 51-102 (379)
357 TIGR00658 orni_carb_tr ornithi 54.0 69 0.0015 28.4 7.7 60 71-131 143-208 (304)
358 PRK07576 short chain dehydroge 53.9 1.3E+02 0.0028 25.4 9.3 70 78-148 10-82 (264)
359 cd08264 Zn_ADH_like2 Alcohol d 53.6 91 0.002 27.0 8.5 50 70-126 156-205 (325)
360 PRK05650 short chain dehydroge 53.6 1.3E+02 0.0028 25.4 9.2 70 80-149 3-74 (270)
361 PRK02255 putrescine carbamoylt 53.6 91 0.002 28.2 8.5 54 77-130 154-213 (338)
362 cd08187 BDH Butanol dehydrogen 53.6 1.2E+02 0.0026 27.6 9.5 110 103-219 7-137 (382)
363 PRK07814 short chain dehydroge 53.5 96 0.0021 26.1 8.4 71 77-148 10-83 (263)
364 cd05288 PGDH Prostaglandin deh 53.4 1.5E+02 0.0032 25.6 11.0 52 72-126 141-193 (329)
365 PRK06836 aspartate aminotransf 53.3 1.7E+02 0.0038 26.4 11.3 82 81-163 99-181 (394)
366 PRK07577 short chain dehydroge 53.2 1.2E+02 0.0027 24.6 9.2 62 78-148 4-65 (234)
367 PRK08159 enoyl-(acyl carrier p 53.2 1.4E+02 0.0031 25.4 9.5 72 78-150 11-86 (272)
368 COG1062 AdhC Zn-dependent alco 53.2 1.5E+02 0.0034 26.9 9.6 115 68-221 177-291 (366)
369 cd08238 sorbose_phosphate_red 53.1 1.7E+02 0.0037 26.7 10.4 58 72-131 171-238 (410)
370 TIGR02823 oxido_YhdH putative 53.1 98 0.0021 26.7 8.6 52 74-128 142-194 (323)
371 PRK14804 ornithine carbamoyltr 53.0 78 0.0017 28.2 7.9 37 77-113 153-189 (311)
372 PRK06057 short chain dehydroge 53.0 1.3E+02 0.0029 25.0 10.0 68 77-148 7-75 (255)
373 cd05278 FDH_like Formaldehyde 53.0 1.3E+02 0.0028 26.2 9.4 54 71-127 162-215 (347)
374 PRK07370 enoyl-(acyl carrier p 52.9 1.4E+02 0.003 25.1 9.3 72 78-150 7-85 (258)
375 cd08253 zeta_crystallin Zeta-c 52.9 1.4E+02 0.0031 25.2 10.8 54 72-128 140-193 (325)
376 cd08170 GlyDH Glycerol dehydro 52.9 65 0.0014 28.9 7.5 43 174-219 67-110 (351)
377 PRK10490 sensor protein KdpD; 52.9 2E+02 0.0043 29.6 11.7 108 78-192 251-375 (895)
378 PRK08862 short chain dehydroge 52.8 1.3E+02 0.0029 24.9 9.8 75 114-193 19-93 (227)
379 KOG0780 Signal recognition par 52.8 2E+02 0.0043 26.9 11.2 166 52-225 66-272 (483)
380 CHL00194 ycf39 Ycf39; Provisio 52.7 97 0.0021 27.1 8.5 31 80-110 3-33 (317)
381 PRK07066 3-hydroxybutyryl-CoA 52.6 1.7E+02 0.0037 26.1 10.7 127 81-223 10-147 (321)
382 cd08176 LPO Lactadehyde:propan 52.6 1.1E+02 0.0024 27.7 9.1 95 102-204 5-104 (377)
383 PRK12769 putative oxidoreducta 52.6 58 0.0013 32.0 7.6 52 77-129 327-396 (654)
384 cd08251 polyketide_synthase po 52.5 1.4E+02 0.003 25.1 11.1 54 70-126 114-167 (303)
385 PRK09423 gldA glycerol dehydro 52.5 95 0.0021 28.1 8.6 42 175-219 75-117 (366)
386 PLN02178 cinnamyl-alcohol dehy 52.5 50 0.0011 29.9 6.8 51 75-128 177-227 (375)
387 PRK07074 short chain dehydroge 52.5 1.2E+02 0.0025 25.3 8.7 32 78-109 3-34 (257)
388 cd08290 ETR 2-enoyl thioester 52.4 1.1E+02 0.0023 26.8 8.7 59 72-130 142-201 (341)
389 PRK12748 3-ketoacyl-(acyl-carr 52.4 1.4E+02 0.003 24.9 9.7 72 78-149 6-92 (256)
390 COG1587 HemD Uroporphyrinogen- 52.3 1.5E+02 0.0032 25.2 10.1 125 90-223 86-217 (248)
391 PRK06482 short chain dehydroge 52.3 1.1E+02 0.0023 26.0 8.5 32 79-110 4-35 (276)
392 PRK11706 TDP-4-oxo-6-deoxy-D-g 52.2 76 0.0016 28.6 7.9 52 81-132 49-100 (375)
393 PRK07392 threonine-phosphate d 52.1 71 0.0015 28.5 7.6 50 81-132 77-126 (360)
394 KOG0022 Alcohol dehydrogenase, 52.0 1.8E+02 0.004 26.3 12.9 116 70-222 186-301 (375)
395 PRK12779 putative bifunctional 51.9 28 0.00062 35.9 5.5 52 77-129 306-375 (944)
396 PRK07060 short chain dehydroge 51.9 1.3E+02 0.0029 24.6 9.6 53 78-133 10-63 (245)
397 cd08235 iditol_2_DH_like L-idi 51.8 1.6E+02 0.0035 25.6 11.4 55 70-127 159-213 (343)
398 PRK08642 fabG 3-ketoacyl-(acyl 51.7 1.4E+02 0.003 24.7 9.1 33 78-110 6-38 (253)
399 cd06313 PBP1_ABC_sugar_binding 51.6 1.5E+02 0.0032 25.0 9.4 46 172-220 173-219 (272)
400 PRK05476 S-adenosyl-L-homocyst 51.6 95 0.0021 29.0 8.4 48 76-127 211-258 (425)
401 PRK07775 short chain dehydroge 51.5 1.5E+02 0.0033 25.1 9.6 71 78-148 11-83 (274)
402 COG1691 NCAIR mutase (PurE)-re 51.5 1.6E+02 0.0034 25.3 9.2 48 168-219 157-204 (254)
403 PF11814 DUF3335: Peptidase_C3 51.5 90 0.0019 26.2 7.4 25 87-111 53-77 (207)
404 cd08244 MDR_enoyl_red Possible 51.4 1.6E+02 0.0034 25.3 11.0 55 70-127 136-190 (324)
405 PF13478 XdhC_C: XdhC Rossmann 51.4 23 0.00049 27.5 3.7 31 81-111 1-31 (136)
406 PRK15481 transcriptional regul 51.4 1.6E+02 0.0035 27.0 10.0 79 81-163 144-225 (431)
407 PRK08690 enoyl-(acyl carrier p 51.2 1.5E+02 0.0032 25.0 9.3 71 78-149 7-81 (261)
408 COG0399 WecE Predicted pyridox 51.2 1.4E+02 0.003 27.4 9.3 93 80-173 51-145 (374)
409 PF02737 3HCDH_N: 3-hydroxyacy 51.1 57 0.0012 26.4 6.3 30 81-110 2-31 (180)
410 cd08181 PPD-like 1,3-propanedi 51.1 1.8E+02 0.0039 26.2 10.1 19 183-203 83-101 (357)
411 PLN03050 pyridoxine (pyridoxam 50.9 1.5E+02 0.0033 25.4 9.1 49 79-127 62-117 (246)
412 PRK07324 transaminase; Validat 50.9 1.3E+02 0.0029 27.0 9.3 82 81-163 83-166 (373)
413 PRK07832 short chain dehydroge 50.9 1.1E+02 0.0024 25.8 8.4 69 80-149 3-75 (272)
414 PRK07201 short chain dehydroge 50.9 97 0.0021 30.1 8.9 74 77-150 371-446 (657)
415 PRK08264 short chain dehydroge 50.8 87 0.0019 25.7 7.6 32 78-109 7-39 (238)
416 cd08260 Zn_ADH6 Alcohol dehydr 50.8 1.7E+02 0.0037 25.6 10.6 52 71-126 160-211 (345)
417 PRK08340 glucose-1-dehydrogena 50.4 1.4E+02 0.0031 24.9 9.0 69 80-149 3-73 (259)
418 PRK12859 3-ketoacyl-(acyl-carr 50.4 1.5E+02 0.0033 24.8 15.3 72 78-149 7-93 (256)
419 PRK12747 short chain dehydroge 50.4 1.1E+02 0.0023 25.5 8.1 53 78-130 5-59 (252)
420 PLN03049 pyridoxine (pyridoxam 50.2 92 0.002 29.4 8.2 49 79-127 61-116 (462)
421 PRK05166 histidinol-phosphate 49.7 99 0.0022 27.7 8.3 82 81-163 91-172 (371)
422 cd08248 RTN4I1 Human Reticulon 49.6 1.1E+02 0.0025 26.6 8.5 47 77-127 163-209 (350)
423 cd08173 Gro1PDH Sn-glycerol-1- 49.5 1.9E+02 0.0042 25.7 10.5 45 173-220 67-112 (339)
424 PRK13243 glyoxylate reductase; 49.4 1.3E+02 0.0027 27.0 8.7 105 77-206 150-256 (333)
425 PRK12749 quinate/shikimate deh 49.4 1.4E+02 0.003 26.2 8.8 34 77-111 124-157 (288)
426 PRK02102 ornithine carbamoyltr 49.3 88 0.0019 28.2 7.6 59 71-131 150-216 (331)
427 cd08270 MDR4 Medium chain dehy 49.3 1.6E+02 0.0034 25.1 9.2 49 76-127 132-180 (305)
428 PF02887 PK_C: Pyruvate kinase 49.3 58 0.0013 24.1 5.6 44 172-221 7-50 (117)
429 PLN02583 cinnamoyl-CoA reducta 49.2 1.6E+02 0.0034 25.5 9.2 33 78-110 7-39 (297)
430 PRK11749 dihydropyrimidine deh 49.2 80 0.0017 29.4 7.7 54 76-130 272-331 (457)
431 PRK06197 short chain dehydroge 49.2 1.4E+02 0.0031 25.7 9.0 71 78-149 17-92 (306)
432 PRK05826 pyruvate kinase; Prov 49.0 2.4E+02 0.0052 26.7 11.8 125 91-221 262-407 (465)
433 PRK09291 short chain dehydroge 48.8 81 0.0018 26.2 7.1 53 78-130 3-56 (257)
434 COG0118 HisH Glutamine amidotr 48.6 1E+02 0.0023 25.7 7.3 56 80-145 5-60 (204)
435 cd00288 Pyruvate_Kinase Pyruva 48.5 1.9E+02 0.0041 27.6 10.0 69 56-132 359-427 (480)
436 COG0169 AroE Shikimate 5-dehyd 48.3 73 0.0016 28.0 6.8 76 36-112 84-160 (283)
437 PRK08912 hypothetical protein; 48.2 2.1E+02 0.0045 25.7 13.3 78 52-132 62-140 (387)
438 cd08276 MDR7 Medium chain dehy 48.2 1.8E+02 0.0039 25.0 11.2 54 72-129 156-209 (336)
439 PRK12746 short chain dehydroge 48.2 1.6E+02 0.0034 24.4 9.1 70 78-147 7-79 (254)
440 PRK12810 gltD glutamate syntha 48.1 97 0.0021 29.0 8.1 50 80-129 145-212 (471)
441 cd05284 arabinose_DH_like D-ar 48.1 1.9E+02 0.004 25.2 10.5 52 73-128 164-216 (340)
442 cd05283 CAD1 Cinnamyl alcohol 48.0 1.4E+02 0.003 26.2 8.8 52 74-129 167-218 (337)
443 PRK07366 succinyldiaminopimela 47.8 2.1E+02 0.0045 25.7 12.1 110 51-164 66-179 (388)
444 PRK12562 ornithine carbamoyltr 47.8 91 0.002 28.1 7.5 51 81-131 159-217 (334)
445 PRK12825 fabG 3-ketoacyl-(acyl 47.7 1.5E+02 0.0033 24.1 9.9 54 78-131 7-62 (249)
446 PRK07856 short chain dehydroge 47.6 1.2E+02 0.0026 25.2 8.0 33 78-110 7-39 (252)
447 PRK06997 enoyl-(acyl carrier p 47.6 1.5E+02 0.0032 25.1 8.6 71 78-149 7-81 (260)
448 PLN02514 cinnamyl-alcohol dehy 47.5 1.7E+02 0.0037 26.0 9.4 55 72-129 176-230 (357)
449 PF01494 FAD_binding_3: FAD bi 47.4 29 0.00062 30.2 4.3 30 80-109 3-32 (356)
450 PRK12814 putative NADPH-depend 47.3 1.3E+02 0.0029 29.6 9.2 56 74-130 320-381 (652)
451 PRK04284 ornithine carbamoyltr 47.2 1.6E+02 0.0036 26.4 9.1 58 72-131 151-216 (332)
452 PRK05447 1-deoxy-D-xylulose 5- 47.1 2.4E+02 0.0051 26.1 13.5 125 81-223 5-154 (385)
453 COG0299 PurN Folate-dependent 47.1 85 0.0019 26.1 6.6 91 81-182 5-102 (200)
454 cd06320 PBP1_allose_binding Pe 46.8 1.7E+02 0.0037 24.4 18.1 45 173-220 173-219 (275)
455 PRK09730 putative NAD(P)-bindi 46.8 1.6E+02 0.0035 24.1 9.9 69 80-148 4-75 (247)
456 PRK12778 putative bifunctional 46.8 78 0.0017 31.7 7.6 53 77-130 570-628 (752)
457 PRK02842 light-independent pro 46.8 2.4E+02 0.0051 26.2 10.4 55 77-132 290-346 (427)
458 TIGR01318 gltD_gamma_fam gluta 46.7 89 0.0019 29.3 7.6 50 80-129 143-210 (467)
459 PRK04870 histidinol-phosphate 46.7 1.4E+02 0.003 26.5 8.6 82 81-163 84-166 (356)
460 PRK12827 short chain dehydroge 46.7 1.6E+02 0.0035 24.1 8.8 71 78-148 7-83 (249)
461 PRK14805 ornithine carbamoyltr 46.7 75 0.0016 28.2 6.7 60 71-131 142-207 (302)
462 PRK07889 enoyl-(acyl carrier p 46.6 1.8E+02 0.0038 24.5 9.0 70 78-149 8-82 (256)
463 PF13580 SIS_2: SIS domain; PD 46.5 76 0.0017 24.3 6.1 35 74-108 101-137 (138)
464 PRK01713 ornithine carbamoyltr 46.4 60 0.0013 29.2 6.2 51 81-131 159-217 (334)
465 PRK08220 2,3-dihydroxybenzoate 46.4 1.7E+02 0.0036 24.1 8.7 33 78-110 9-41 (252)
466 cd08283 FDH_like_1 Glutathione 46.2 2.2E+02 0.0049 25.6 10.3 56 70-128 178-234 (386)
467 PRK06123 short chain dehydroge 46.1 1.4E+02 0.0031 24.5 8.2 52 79-130 4-57 (248)
468 cd08185 Fe-ADH1 Iron-containin 46.0 86 0.0019 28.5 7.3 20 183-204 83-102 (380)
469 cd08551 Fe-ADH iron-containing 45.9 78 0.0017 28.6 6.9 28 175-204 71-99 (370)
470 PRK06179 short chain dehydroge 45.9 1.1E+02 0.0025 25.6 7.7 66 78-149 5-70 (270)
471 cd08234 threonine_DH_like L-th 45.8 2E+02 0.0043 24.9 11.0 54 70-126 153-206 (334)
472 PRK12775 putative trifunctiona 45.8 2E+02 0.0043 30.1 10.5 98 77-194 430-528 (1006)
473 PLN02477 glutamate dehydrogena 45.6 1E+02 0.0022 28.7 7.6 52 58-110 186-238 (410)
474 PRK06197 short chain dehydroge 45.6 1.8E+02 0.004 25.0 9.1 75 114-194 30-106 (306)
475 TIGR03537 DapC succinyldiamino 45.4 2.2E+02 0.0047 25.2 12.3 111 50-163 33-149 (350)
476 PRK05854 short chain dehydroge 45.4 1.6E+02 0.0035 25.7 8.8 75 114-194 28-104 (313)
477 COG1433 Uncharacterized conser 45.2 1.4E+02 0.003 22.8 7.3 51 90-143 54-104 (121)
478 PRK06196 oxidoreductase; Provi 45.1 2.1E+02 0.0045 24.9 9.5 69 77-149 26-96 (315)
479 cd08255 2-desacetyl-2-hydroxye 45.1 1.7E+02 0.0038 24.5 8.7 51 70-124 91-142 (277)
480 COG0379 NadA Quinolinate synth 45.1 2.3E+02 0.005 25.4 12.0 132 83-225 143-283 (324)
481 PRK07069 short chain dehydroge 45.0 1.7E+02 0.0038 24.0 9.7 30 81-110 3-32 (251)
482 PRK14057 epimerase; Provisiona 44.9 1.8E+02 0.004 25.1 8.6 32 100-131 190-221 (254)
483 cd08254 hydroxyacyl_CoA_DH 6-h 44.8 2E+02 0.0044 24.7 10.6 56 71-130 160-215 (338)
484 PRK13984 putative oxidoreducta 44.8 93 0.002 30.2 7.7 52 77-129 283-352 (604)
485 PRK12770 putative glutamate sy 44.8 1E+02 0.0023 27.4 7.6 53 77-130 172-230 (352)
486 PRK06139 short chain dehydroge 44.7 1.7E+02 0.0037 25.9 8.9 75 114-194 21-95 (330)
487 PRK08535 translation initiatio 44.6 1.1E+02 0.0025 27.1 7.6 58 74-132 118-179 (310)
488 TIGR01317 GOGAT_sm_gam glutama 44.5 1E+02 0.0022 29.1 7.7 50 80-129 145-212 (485)
489 PRK07984 enoyl-(acyl carrier p 44.2 2E+02 0.0043 24.4 9.4 72 78-150 7-82 (262)
490 PRK01077 cobyrinic acid a,c-di 44.2 2.7E+02 0.0059 26.0 11.2 132 81-217 7-150 (451)
491 PRK06202 hypothetical protein; 44.1 33 0.00072 28.6 4.0 38 184-221 62-99 (232)
492 cd08286 FDH_like_ADH2 formalde 44.1 2E+02 0.0043 25.1 9.2 51 72-126 162-213 (345)
493 PLN02494 adenosylhomocysteinas 44.1 94 0.002 29.5 7.2 52 72-127 249-300 (477)
494 PRK06101 short chain dehydroge 43.9 1.8E+02 0.004 23.9 9.1 62 80-145 4-67 (240)
495 cd08265 Zn_ADH3 Alcohol dehydr 43.9 1.6E+02 0.0034 26.5 8.7 54 72-128 199-252 (384)
496 PRK07533 enoyl-(acyl carrier p 43.8 1.9E+02 0.0042 24.2 9.6 72 78-150 11-86 (258)
497 PF00208 ELFV_dehydrog: Glutam 43.6 84 0.0018 26.9 6.4 51 59-109 12-63 (244)
498 PRK05599 hypothetical protein; 43.6 1.9E+02 0.0041 24.1 8.6 69 80-150 3-75 (246)
499 PRK01438 murD UDP-N-acetylmura 43.5 1.3E+02 0.0028 28.1 8.3 49 81-129 19-69 (480)
500 cd08191 HHD 6-hydroxyhexanoate 43.4 2.6E+02 0.0056 25.5 11.8 20 183-204 79-98 (386)
No 1
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-58 Score=397.55 Aligned_cols=227 Identities=51% Similarity=0.830 Sum_probs=215.2
Q ss_pred HHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHH
Q 025563 18 KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIA 97 (251)
Q Consensus 18 ~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 97 (251)
+.+.+.+++|||++++++....+++||+|+|.+||+||.|||.|.+|+.+|+++|.+++|.+ ||++||||+|.+||+.|
T Consensus 3 ~~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~t-IVE~TSGNTGI~LA~va 81 (300)
T COG0031 3 ESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGT-IVEATSGNTGIALAMVA 81 (300)
T ss_pred cchHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCE-EEEcCCChHHHHHHHHH
Confidence 45778899999999999988888999999999999999999999999999999999999987 99999999999999999
Q ss_pred HHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCC-hHHHHHHHHHHhhcCCC-eEecCCCCCCchHHHHHhhHHHH
Q 025563 98 ALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG-FEGILRKGEEILSNTPN-GFMFRQFENPANPKIHYETTGPE 175 (251)
Q Consensus 98 ~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~n~~~~~~g~~t~~~E 175 (251)
+.+|+|+++|||++++.++++.|+.|||+|+.++...+ +..+.+++++++++.|+ .+|.+||+||.|+++||.++++|
T Consensus 82 a~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~E 161 (300)
T COG0031 82 AAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPE 161 (300)
T ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHH
Confidence 99999999999999999999999999999999998434 88999999999999988 77888999999999999999999
Q ss_pred HhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCccccccc
Q 025563 176 IWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFFF 246 (251)
Q Consensus 176 I~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~~ 246 (251)
|++|+++.+|+||+++|||||++|++++||+.+|++|+++|||++|+.+.+|. ++|.|+|||.+|+|.++
T Consensus 162 I~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~-g~~~i~GIG~~~ip~~~ 231 (300)
T COG0031 162 IWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE-GPHKIEGIGAGFVPENL 231 (300)
T ss_pred HHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCC-CCcccCCCCCCcCCccc
Confidence 99999888999999999999999999999999999999999999998888766 99999999999999654
No 2
>PLN03013 cysteine synthase
Probab=100.00 E-value=1.4e-55 Score=400.84 Aligned_cols=232 Identities=64% Similarity=1.061 Sum_probs=217.6
Q ss_pred HHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHH
Q 025563 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLA 94 (251)
Q Consensus 15 ~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA 94 (251)
.+++++.+.+++|||++++.+++..+++||+|+|++||+||||||+|.+++..++++|.+.+|+.+||++|+||||.|+|
T Consensus 112 ~~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA 191 (429)
T PLN03013 112 NIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLA 191 (429)
T ss_pred HHHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHH
Confidence 46788999999999999999988778899999999999999999999999999999999888866699999999999999
Q ss_pred HHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHH
Q 025563 95 FIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGP 174 (251)
Q Consensus 95 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 174 (251)
++|+.+|++++||||+.+++.|+++|+.+||+|+.+++..+++++.+.+++++++.++++|++||+|+.++++||.++|+
T Consensus 192 ~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~ 271 (429)
T PLN03013 192 FIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGP 271 (429)
T ss_pred HHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987655778889999998887689999999999999789999999
Q ss_pred HHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCccccccc
Q 025563 175 EIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFFF 246 (251)
Q Consensus 175 EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~~ 246 (251)
||++|+.+++|+||+|+||||+++|++++||+.+|++||+||||++|+++.++.++++.++|||.+++|..+
T Consensus 272 EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~ 343 (429)
T PLN03013 272 EIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNL 343 (429)
T ss_pred HHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhH
Confidence 999999778999999999999999999999999999999999999999988888899999999999888754
No 3
>PLN02565 cysteine synthase
Probab=100.00 E-value=8.3e-55 Score=387.23 Aligned_cols=231 Identities=68% Similarity=1.092 Sum_probs=213.6
Q ss_pred HHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHH
Q 025563 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLA 94 (251)
Q Consensus 15 ~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA 94 (251)
...+.++..+++|||++++.++...+.+||+|+|++|||||||||+|.+++..+.++|.+.+|.+.||++|+||||.|+|
T Consensus 4 ~~~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA 83 (322)
T PLN02565 4 SIAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLA 83 (322)
T ss_pred hhhhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHH
Confidence 34567888999999999988876667899999999999999999999999999999998888866799999999999999
Q ss_pred HHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHH
Q 025563 95 FIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGP 174 (251)
Q Consensus 95 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 174 (251)
++|+.+|++|+||||+++++.|+++++.+||+|+.+++..+++++.+.+++++++.++.+|++||+|+.|+.+||.|+++
T Consensus 84 ~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~ 163 (322)
T PLN02565 84 FMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGP 163 (322)
T ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987545678889999998876688999999999998889999999
Q ss_pred HHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCcccccc
Q 025563 175 EIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFF 245 (251)
Q Consensus 175 EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~ 245 (251)
||++|+.+.||+||+|+|+||+++|++++||+.+|++||++|||++|+++.++.+.++.++|||.+++|..
T Consensus 164 Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg~~~~~~~ 234 (322)
T PLN02565 164 EIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGV 234 (322)
T ss_pred HHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCCc
Confidence 99999976799999999999999999999999999999999999999999888888999999999988765
No 4
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=6.4e-54 Score=387.08 Aligned_cols=231 Identities=58% Similarity=0.966 Sum_probs=215.1
Q ss_pred HHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHH
Q 025563 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAF 95 (251)
Q Consensus 16 ~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 95 (251)
+.+++.+.+++|||+++++++...|++||+|+|++||+||||||++.+++.+++++|.+.+|.++||++|+||||+|+|+
T Consensus 49 ~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~ 128 (368)
T PLN02556 49 IKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAF 128 (368)
T ss_pred hhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHH
Confidence 45788999999999999999888889999999999999999999999999999999999998767999999999999999
Q ss_pred HHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHH
Q 025563 96 IAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPE 175 (251)
Q Consensus 96 ~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 175 (251)
+|+++|++|+||||+.++..|+++++.+||+|+.++...++..+++.+.++++++++++|++||+|+.++++||.++++|
T Consensus 129 ~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~E 208 (368)
T PLN02556 129 MAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPE 208 (368)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999865445578888888888877899999999999997799999999
Q ss_pred HhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCccccccc
Q 025563 176 IWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFFF 246 (251)
Q Consensus 176 I~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~~ 246 (251)
|++|+.+.+|+||+|+|||||++|++++|++.+|++||+||||++|+++.++.+.++.++|+|.++.|.++
T Consensus 209 I~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~ 279 (368)
T PLN02556 209 IWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDIL 279 (368)
T ss_pred HHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCeeeeeccCCCCcccc
Confidence 99998668999999999999999999999999999999999999999888888899999999999887664
No 5
>PLN00011 cysteine synthase
Probab=100.00 E-value=1.5e-52 Score=373.42 Aligned_cols=234 Identities=71% Similarity=1.078 Sum_probs=212.8
Q ss_pred hHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHH
Q 025563 12 HKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGI 91 (251)
Q Consensus 12 ~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~ 91 (251)
+.....+.+...+++|||++++++++..|.+||+|+|++|||||||+|++.+++..++++|.+.+|..+||++|+||||+
T Consensus 3 ~~~~~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~ 82 (323)
T PLN00011 3 DRCLIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGI 82 (323)
T ss_pred chhhHHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHH
Confidence 33455667888899999999999887667899999999999999999999999999999998888755599999999999
Q ss_pred HHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhh
Q 025563 92 GLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYET 171 (251)
Q Consensus 92 alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 171 (251)
|+|++|+.+|++|+||||..+++.|+++++.+||+|+.++...+.+++++.+++++++.++++|++||+|+.++..||.+
T Consensus 83 alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t 162 (323)
T PLN00011 83 GLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRT 162 (323)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHH
Confidence 99999999999999999999999999999999999999987544456778888888876678999999999988779999
Q ss_pred HHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCcccccc
Q 025563 172 TGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFF 245 (251)
Q Consensus 172 ~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~ 245 (251)
+++||++|+.+.||+||+|+|+||+++|++++|++.+|++||+||||++|+++..+.+.++.++|++.+.+|..
T Consensus 163 ~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~ 236 (323)
T PLN00011 163 TGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFN 236 (323)
T ss_pred HHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCcc
Confidence 99999999866899999999999999999999999999999999999999999888888999999999887765
No 6
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-54 Score=370.08 Aligned_cols=234 Identities=61% Similarity=0.947 Sum_probs=221.3
Q ss_pred HHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHH
Q 025563 14 RAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGL 93 (251)
Q Consensus 14 ~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~al 93 (251)
..+...+.+.+|+|||+++++....+.++||+|+|.+||+||.|||.++.|+.+|+.+|.+.||+++++++||||+|.+|
T Consensus 40 ~~~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigL 119 (362)
T KOG1252|consen 40 ILILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGL 119 (362)
T ss_pred hhhhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHH
Confidence 34456788999999999999998888889999999999999999999999999999999999998889999999999999
Q ss_pred HHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHH---HHHHHHHHhhcCCCeEecCCCCCCchHHHHHh
Q 025563 94 AFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEG---ILRKGEEILSNTPNGFMFRQFENPANPKIHYE 170 (251)
Q Consensus 94 A~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~ 170 (251)
|++|+..|+||+++||+.++.+|+..|+.+||+|++++....++. +...+.++..+.|+.+.++||+||.|+.+||.
T Consensus 120 A~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ 199 (362)
T KOG1252|consen 120 AYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYE 199 (362)
T ss_pred HHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccc
Confidence 999999999999999999999999999999999999997655555 88889999999999999999999999999999
Q ss_pred hHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCc--eeecccCCcccccccc
Q 025563 171 TTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGR--LLFFLFFLFFFCFFFS 247 (251)
Q Consensus 171 t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~--~~i~g~g~~~~~~~~~ 247 (251)
++++||+.|+.+++|.||.++|||||++|+.+++++.+|++||++|||.+|..+.+..+++ |.|+|||+||+|..+-
T Consensus 200 ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld 278 (362)
T KOG1252|consen 200 TTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLD 278 (362)
T ss_pred cccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccc
Confidence 9999999999999999999999999999999999999999999999999999999888888 9999999999998753
No 7
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=9.4e-52 Score=364.90 Aligned_cols=225 Identities=55% Similarity=0.898 Sum_probs=207.3
Q ss_pred hcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHC
Q 025563 21 TQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALR 100 (251)
Q Consensus 21 ~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~ 100 (251)
...+++|||+++++|++..|.+||+|+|++|||||||+|++.+++..++++|.+.+|.+ |+++|+||||+|+|++|+++
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~~~ 80 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDT-IIEATSGNTGIALAMVAAAK 80 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCCE-EEEeCCChHHHHHHHHHHHc
Confidence 45789999999999998888999999999999999999999999999999998777765 99999999999999999999
Q ss_pred CCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhh
Q 025563 101 GYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDS 180 (251)
Q Consensus 101 G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~ 180 (251)
|++|+||||+..++.|+++++.+||+|+.+++..+++++.+.+++++++.+++++++||+|+.++..||.+++.||++|+
T Consensus 81 G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 81 GYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999997655788999999998876568899999999986679999999999999
Q ss_pred CCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCccccccc
Q 025563 181 GGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFFF 246 (251)
Q Consensus 181 ~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~~ 246 (251)
++.||+||+|+|+||+++|++.+|++.+|.+||++|||++|+++.++.++++.+++|+.+.+|..+
T Consensus 161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 226 (299)
T TIGR01136 161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKIL 226 (299)
T ss_pred CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCccC
Confidence 767999999999999999999999999999999999999999998877888889999988777543
No 8
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=1.6e-51 Score=363.20 Aligned_cols=224 Identities=55% Similarity=0.896 Sum_probs=203.7
Q ss_pred hcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHC
Q 025563 21 TQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALR 100 (251)
Q Consensus 21 ~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~ 100 (251)
...+++|||+++++ ....|.+||+|+|++|||||||+|++.+++..+.++|.+.+|.+ |+++|+||||+|+|++|+++
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKT-IVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCE-EEEeCCChhHHHHHHHHHHc
Confidence 45789999999998 45678899999999999999999999999999999998777765 99999999999999999999
Q ss_pred CCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCC-eEecCCCCCCchHHHHHhhHHHHHhhh
Q 025563 101 GYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPN-GFMFRQFENPANPKIHYETTGPEIWKD 179 (251)
Q Consensus 101 G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~n~~~~~~g~~t~~~EI~~q 179 (251)
|++|+||||+++++.|++.++.+||+|+.+++..+++++.+.+++++++.++ +++++||+|+.++..||.++++||++|
T Consensus 80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 159 (298)
T TIGR01139 80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD 159 (298)
T ss_pred CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999864456788889998888744 558999999998778999999999999
Q ss_pred hCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCccccccc
Q 025563 180 SGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFFF 246 (251)
Q Consensus 180 ~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~~ 246 (251)
++..||+||+|+|+||+++|++.+|++.+|++||++|||.+|+++....+.++.++|||.+.+|..+
T Consensus 160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~ 226 (298)
T TIGR01139 160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNL 226 (298)
T ss_pred hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCCcc
Confidence 9667999999999999999999999999999999999999999888878888899999988777643
No 9
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=9.8e-52 Score=363.95 Aligned_cols=208 Identities=45% Similarity=0.735 Sum_probs=193.8
Q ss_pred HHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHH
Q 025563 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAF 95 (251)
Q Consensus 16 ~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 95 (251)
+++++...+++|||+++++|....|++||+|+|++|||||||+|++.+++.++.++|.+.+|++ ||++|+||||+|+|+
T Consensus 2 ~~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~-vv~aSsGN~g~alA~ 80 (296)
T PRK11761 2 AYPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDT-LIEATSGNTGIALAM 80 (296)
T ss_pred ccccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCCE-EEEeCCChHHHHHHH
Confidence 3567888899999999999988888999999999999999999999999999999998777766 999999999999999
Q ss_pred HHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHH
Q 025563 96 IAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPE 175 (251)
Q Consensus 96 ~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 175 (251)
+|+.+|++|+||||+.+++.|+++++.+||+|+.++...+++++.+.+++++++. +++|++||+|+.++..||.++++|
T Consensus 81 ~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~E 159 (296)
T PRK11761 81 IAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPE 159 (296)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHH
Confidence 9999999999999999999999999999999999997556788888899988876 789999999999988789999999
Q ss_pred HhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 176 IWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 176 I~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
|++|+++.+|+||+|+|+||+++|++++||+.+|++||+||||++++++.
T Consensus 160 i~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~ 209 (296)
T PRK11761 160 IWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIP 209 (296)
T ss_pred HHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCc
Confidence 99999767999999999999999999999999999999999999987774
No 10
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=9.4e-51 Score=356.86 Aligned_cols=217 Identities=43% Similarity=0.704 Sum_probs=196.0
Q ss_pred hhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHH
Q 025563 20 ATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAAL 99 (251)
Q Consensus 20 v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~ 99 (251)
|.+.+++|||+++++++...|.+||+|+|++||+||||+|++.+++..+.++|.+.++++ ||++|+||||+|+|++|++
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~~ 80 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDV-LIEATSGNTGIALAMIAAL 80 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCE-EEEECCChHHHHHHHHHHH
Confidence 456799999999999988888999999999999999999999999999999998777766 9999999999999999999
Q ss_pred CCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhh
Q 025563 100 RGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKD 179 (251)
Q Consensus 100 ~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q 179 (251)
+|++|+||||+..++.|+++++.+||+|+.+++..+++++.+.+++++++. +.+|++||+|+.++..||.++++||++|
T Consensus 81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q 159 (290)
T TIGR01138 81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQ 159 (290)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHH
Confidence 999999999999999999999999999999987556788888999998887 4568999999999987899999999999
Q ss_pred hCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCcccccc
Q 025563 180 SGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFF 245 (251)
Q Consensus 180 ~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~ 245 (251)
+...+|+||+|+|+||+++|++.+||+.+|++||++|||.+|+.+.+ +.+++.++.|.+
T Consensus 160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g-------~~~~~~~~~~~~ 218 (290)
T TIGR01138 160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG-------IRRWPTEYLPGI 218 (290)
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccC-------CCCCCCCcCCcc
Confidence 97679999999999999999999999999999999999999876532 345555555553
No 11
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-51 Score=361.03 Aligned_cols=212 Identities=25% Similarity=0.299 Sum_probs=198.8
Q ss_pred ccchhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEecc
Q 025563 7 MEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTG 86 (251)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ss 86 (251)
+.++.+|..++.++...+.+|||++++.|++.+|++||+|+|++||+||||.|+|++.+..+.+.+.... .||++|+
T Consensus 6 ~~~~~~i~~A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~~~---gViaaSa 82 (347)
T COG1171 6 PVSLADILAAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERAA---GVIAASA 82 (347)
T ss_pred cccHHHHHHHHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhhcC---ceEEecC
Confidence 4468999999999999999999999999999999999999999999999999999999998754432222 3999999
Q ss_pred ChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHH
Q 025563 87 GNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPK 166 (251)
Q Consensus 87 GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~ 166 (251)
||||+++|++|+++|+|++||||.+++..|++.+|.|||+|+.++. +|+++.+.++++++++ |+.|+++||+|+.+
T Consensus 83 GNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~--~~dda~~~a~~~a~~~-G~~~i~pfD~p~vi- 158 (347)
T COG1171 83 GNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGD--NFDDAYAAAEELAEEE-GLTFVPPFDDPDVI- 158 (347)
T ss_pred CcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEEeCCCCCccee-
Confidence 9999999999999999999999999999999999999999999998 6999999999999998 99999999999999
Q ss_pred HHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 167 IHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 167 ~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
+||.|++.||++|+...||+||||+|+||+++|++.+++...|++|||||||++++++.
T Consensus 159 AGQGTi~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~ 217 (347)
T COG1171 159 AGQGTIALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMY 217 (347)
T ss_pred ecccHHHHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHH
Confidence 59999999999999655799999999999999999999999999999999999999876
No 12
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=7.2e-50 Score=357.38 Aligned_cols=227 Identities=45% Similarity=0.697 Sum_probs=198.1
Q ss_pred HHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHH
Q 025563 17 KKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFI 96 (251)
Q Consensus 17 ~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 96 (251)
++.+...+++|||++++++++.+|++||+|+|++||+||||+|++.+++..++++|.+.+|.+ ||++|+||||+|+|++
T Consensus 4 ~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~ 82 (330)
T PRK10717 4 FEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGT-IVEGTAGNTGIGLALV 82 (330)
T ss_pred hhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCCE-EEEeCCcHHHHHHHHH
Confidence 567888899999999999999889999999999999999999999999999999998777766 9999999999999999
Q ss_pred HHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCC------ChHHHHHHHHHHhhcCC-CeEecCCCCCCchHHHHH
Q 025563 97 AALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG------GFEGILRKGEEILSNTP-NGFMFRQFENPANPKIHY 169 (251)
Q Consensus 97 a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~------~~~~~~~~a~~~~~~~~-~~~~~~~~~n~~~~~~g~ 169 (251)
|+++|++|+||||..+++.|+++++.+||+|+.+++.. ..+.+.+.++++.++.+ +++|++||+|+.++..||
T Consensus 83 a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ 162 (330)
T PRK10717 83 AAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHY 162 (330)
T ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHH
Confidence 99999999999999999999999999999999998631 11233444555544433 789999999999887799
Q ss_pred hhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccC---C---CCCceeecccCCcccc
Q 025563 170 ETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNG---G---QPGRLLFFLFFLFFFC 243 (251)
Q Consensus 170 ~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~---~---~~~~~~i~g~g~~~~~ 243 (251)
.+++.||++|++..+|+||+|+|+||+++|++.+|++..|++||++|||++|+.+.. + ..+++.++|||.+.+|
T Consensus 163 ~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~~ 242 (330)
T PRK10717 163 ETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRIT 242 (330)
T ss_pred HhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcCC
Confidence 999999999997679999999999999999999999999999999999999954321 2 2456889999988766
Q ss_pred c
Q 025563 244 F 244 (251)
Q Consensus 244 ~ 244 (251)
.
T Consensus 243 ~ 243 (330)
T PRK10717 243 A 243 (330)
T ss_pred c
Confidence 4
No 13
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=1.2e-49 Score=350.30 Aligned_cols=220 Identities=55% Similarity=0.878 Sum_probs=199.9
Q ss_pred CCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcE
Q 025563 25 GNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKL 104 (251)
Q Consensus 25 ~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~ 104 (251)
|+|||+++++|++..|.+||+|+|++||+||||+|++.+++..+.++|+..++.+ |+++|+||||+|+|++|+++|++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~-vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTT-IIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCE-EEEeCCChHHHHHHHHHHHcCCeE
Confidence 6899999999998888999999999999999999999999999999988666555 999999999999999999999999
Q ss_pred EEEecCCCcHHHHHHHHHcCCEEEEeCCCC--ChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhCC
Q 025563 105 IIVMPSIASMERRIVLRALGAEVYLADQAG--GFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGG 182 (251)
Q Consensus 105 ~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~ 182 (251)
+||||..+++.|+++++.+||+|+.++... +++++.+.++++++++++++|+++|+||.+++.++.++++||.+|++.
T Consensus 80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~ 159 (291)
T cd01561 80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDG 159 (291)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999752 347888889988887668999999999999974445999999999976
Q ss_pred CCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCcccccc
Q 025563 183 DVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFF 245 (251)
Q Consensus 183 ~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~ 245 (251)
.||+||+|+|+||+++|++.+|++..|++||++|||++|+++.+....++.++|||.+++|..
T Consensus 160 ~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~ 222 (291)
T cd01561 160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPEN 222 (291)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCCCCCCc
Confidence 899999999999999999999999999999999999999988666677888999998866554
No 14
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=1e-49 Score=362.30 Aligned_cols=231 Identities=37% Similarity=0.580 Sum_probs=196.4
Q ss_pred HHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHH
Q 025563 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLA 94 (251)
Q Consensus 15 ~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA 94 (251)
.....+.+.+++|||+++++|+...|.+||+|+|++||+||||||++.+++.++.++|.+.++.+ |+++|+||||.|+|
T Consensus 42 ~~~~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~-VveaSSGN~g~alA 120 (423)
T PLN02356 42 KPRNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGV-VTEGSAGSTAISLA 120 (423)
T ss_pred chhhhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCE-EEEeCCHHHHHHHH
Confidence 34556888899999999999988889999999999999999999999999999999998777766 88899999999999
Q ss_pred HHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC-----CCh-HHHH---HHHHHHhhc----------------
Q 025563 95 FIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA-----GGF-EGIL---RKGEEILSN---------------- 149 (251)
Q Consensus 95 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~-----~~~-~~~~---~~a~~~~~~---------------- 149 (251)
++|+.+|++|+||||+++++.|++.++.+||+|+.+++. .++ ..+. +.+.+++++
T Consensus 121 ~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~ 200 (423)
T PLN02356 121 TVAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTN 200 (423)
T ss_pred HHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccccc
Confidence 999999999999999999999999999999999999641 122 1111 234444432
Q ss_pred ----------------CCCeEecCCCCCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEE
Q 025563 150 ----------------TPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKV 213 (251)
Q Consensus 150 ----------------~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~v 213 (251)
.++.+|++||+|+.++.+++..+|+||++|+++++|+||+|+||||+++|++++||+.+|++||
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkV 280 (423)
T PLN02356 201 GCISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKC 280 (423)
T ss_pred cccccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEE
Confidence 1478999999999998777777799999999778999999999999999999999999999999
Q ss_pred EEEeCCCCccccC-------------C----CCCceeecccCCccccccc
Q 025563 214 YGVEPTESAMLNG-------------G----QPGRLLFFLFFLFFFCFFF 246 (251)
Q Consensus 214 igVep~~s~~~~~-------------~----~~~~~~i~g~g~~~~~~~~ 246 (251)
++|||++|+.+.. | .+.++.++|||.+++|..+
T Consensus 281 igVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~~ 330 (423)
T PLN02356 281 FLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQNF 330 (423)
T ss_pred EEEecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCCCCChhH
Confidence 9999999864421 1 1236889999998877653
No 15
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=8.3e-50 Score=365.95 Aligned_cols=208 Identities=27% Similarity=0.390 Sum_probs=194.9
Q ss_pred chhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccCh
Q 025563 9 DNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGN 88 (251)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN 88 (251)
++++|..+++++...+++|||+++++|++.+|++||+|+|++|||||||+|++.+++..+.+++. ..+||++|+||
T Consensus 5 ~~~~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN 80 (404)
T PRK08198 5 TLDDIEEARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGN 80 (404)
T ss_pred CHHHHHHHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCH
Confidence 68899999999999999999999999998889999999999999999999999999998875543 23499999999
Q ss_pred HHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHH
Q 025563 89 TGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH 168 (251)
Q Consensus 89 ~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 168 (251)
||+++|++|+++|++|+||||+.++..|+++++.+||+|+.++. +++++.+.+.+++++. +++|++||+|+.+++ |
T Consensus 81 ~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~~~~~~~-g 156 (404)
T PRK08198 81 HAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGD--VYDEALAKAQELAEET-GATFVHPFDDPDVIA-G 156 (404)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCCccHHH-H
Confidence 99999999999999999999999999999999999999999975 6899999999998886 899999999999985 9
Q ss_pred HhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 169 YETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 169 ~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
|.|+|+||++|+ +++|+||+|+|+||+++|++.+||+.+|++|||||||++|+++.
T Consensus 157 ~~t~a~EI~~q~-~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~ 212 (404)
T PRK08198 157 QGTIGLEILEDL-PDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMP 212 (404)
T ss_pred HHHHHHHHHHhC-CCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHH
Confidence 999999999999 47999999999999999999999999999999999999998874
No 16
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=7.5e-50 Score=364.70 Aligned_cols=209 Identities=25% Similarity=0.316 Sum_probs=195.1
Q ss_pred cchhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccC
Q 025563 8 EDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGG 87 (251)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssG 87 (251)
.++++|..+++++...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+.+..+.+.+. ...||++|+|
T Consensus 2 ~~~~~i~~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaG 77 (403)
T PRK08526 2 LELNKIYQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAG 77 (403)
T ss_pred CCHHHHHHHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECcc
Confidence 468899999999999999999999999999889999999999999999999999999988776543 2249999999
Q ss_pred hHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHH
Q 025563 88 NTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKI 167 (251)
Q Consensus 88 N~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~ 167 (251)
|||+++|++|+++|++|+||||+.++..|++.++.|||+|+.++. +++++.+.+.+++++. +++|++||+|+.++ +
T Consensus 78 Nhg~avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~~~a~~~a~~~a~~~-g~~~v~p~~~~~~i-~ 153 (403)
T PRK08526 78 NHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NYDEAYAFALEYAKEN-NLTFIHPFEDEEVM-A 153 (403)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCCCCCHHHH-h
Confidence 999999999999999999999999999999999999999999986 6899999999998886 78999999999988 5
Q ss_pred HHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 168 HYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 168 g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
||.|++.||++|+ +++|+||+|+|+||+++|++.++|+.+|++||+||||++|+++.
T Consensus 154 G~gtia~EI~eq~-~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~ 210 (403)
T PRK08526 154 GQGTIALEMLDEI-SDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMY 210 (403)
T ss_pred hhHHHHHHHHHhc-CCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHH
Confidence 9999999999999 47999999999999999999999999999999999999999873
No 17
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=7.9e-50 Score=355.90 Aligned_cols=208 Identities=23% Similarity=0.292 Sum_probs=194.2
Q ss_pred chhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccCh
Q 025563 9 DNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGN 88 (251)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN 88 (251)
++.+|..++.++...+++|||+++++|++.+|.+||+|+|++||+||||+|++.+++.++.+++.. .+||++|+||
T Consensus 2 ~~~~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~~----~gvv~aSsGN 77 (322)
T PRK07476 2 SLADIYRARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQERA----RGVVTASTGN 77 (322)
T ss_pred CHHHHHHHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhhC----CeEEEECCCh
Confidence 378899999999999999999999999988899999999999999999999999999999888752 2399999999
Q ss_pred HHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHH
Q 025563 89 TGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH 168 (251)
Q Consensus 89 ~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 168 (251)
||+|+|++|+++|++|+||||+.+++.|++.++.+||+|+.++. +++++.+.+.+++++. +++|++|++|+.+++ |
T Consensus 78 ~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~~-g 153 (322)
T PRK07476 78 HGRALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGR--SQDDAQAEVERLVREE-GLTMVPPFDDPRIIA-G 153 (322)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcceee-c
Confidence 99999999999999999999999999999999999999999986 5788889999988876 789999999999995 9
Q ss_pred HhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 169 YETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 169 ~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
|.++++||++|+. ++|+||+|+|+||+++|++.+|++.+|++||+||||++++++.
T Consensus 154 ~~t~~~Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~ 209 (322)
T PRK07476 154 QGTIGLEILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMH 209 (322)
T ss_pred hhHHHHHHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHH
Confidence 9999999999994 7999999999999999999999999999999999999988654
No 18
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=1.3e-49 Score=355.33 Aligned_cols=223 Identities=26% Similarity=0.309 Sum_probs=199.5
Q ss_pred chhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccCh
Q 025563 9 DNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGN 88 (251)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN 88 (251)
++++|..+++++...+++|||+++++|++..|++||+|+|++||+||||||++.+++..+.+... ...|+++|+||
T Consensus 10 ~~~~i~~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN 85 (333)
T PRK08638 10 AIDDIIEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGN 85 (333)
T ss_pred CHHHHHHHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcH
Confidence 47899999999999999999999999988888999999999999999999999999988765332 12499999999
Q ss_pred HHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHH
Q 025563 89 TGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH 168 (251)
Q Consensus 89 ~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 168 (251)
||.|+|++|+.+|++|+||||++.++.|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+|+.+++ |
T Consensus 86 ~g~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~~~-g 161 (333)
T PRK08638 86 HAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--NFNDTIAKVEEIVEEE-GRTFIPPYDDPKVIA-G 161 (333)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEEcCcCCCcchhc-c
Confidence 99999999999999999999999999999999999999999975 6889999999998886 789999999999985 9
Q ss_pred HhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCCCCceeec-ccCCc
Q 025563 169 YETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN----GGQPGRLLFF-LFFLF 240 (251)
Q Consensus 169 ~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~----~~~~~~~~i~-g~g~~ 240 (251)
|.++++||++|+ +++|+||+|+|+||+++|++.+||+.+|++||++|||++|+++. .+.+.++... +++.|
T Consensus 162 ~~t~a~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~g 237 (333)
T PRK08638 162 QGTIGLEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADG 237 (333)
T ss_pred ccHHHHHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeecc
Confidence 999999999999 57999999999999999999999999999999999999997654 4555544433 45554
No 19
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=1.5e-49 Score=364.07 Aligned_cols=224 Identities=25% Similarity=0.323 Sum_probs=202.9
Q ss_pred chhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccCh
Q 025563 9 DNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGN 88 (251)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN 88 (251)
++++|..+++++...+++|||+++++|++..|++||+|+|++||+||||+|++.+++..+.+.+. . ..||++|+||
T Consensus 8 ~~~~i~~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~-~---~gvv~aSsGN 83 (406)
T PRK06382 8 SFDDILYAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL-R---NGVITASAGN 83 (406)
T ss_pred CHHHHHHHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc-C---CeEEEECCCH
Confidence 58899999999999999999999999998899999999999999999999999999988766543 1 2399999999
Q ss_pred HHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHH
Q 025563 89 TGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH 168 (251)
Q Consensus 89 ~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 168 (251)
||+|+|++|+++|++|+||||+.++..|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+++ |
T Consensus 84 ~g~a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~~~a~~~a~~la~~~-~~~~v~~~~~~~~i~-g 159 (406)
T PRK06382 84 HAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DYDEAHRYADKIAMDE-NRTFIEAFNDRWVIS-G 159 (406)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCccCChHHHH-H
Confidence 99999999999999999999999999999999999999999986 5899999999998886 889999999999986 9
Q ss_pred HhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCC-----CCceeecccCC
Q 025563 169 YETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN----GGQ-----PGRLLFFLFFL 239 (251)
Q Consensus 169 ~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~----~~~-----~~~~~i~g~g~ 239 (251)
|.|+++||++|+ +++|+||+|+|+||+++|++.++++.+|++||+||||++|+++. .+. ..++..+|++.
T Consensus 160 ~~t~~~Ei~eq~-~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~ 238 (406)
T PRK06382 160 QGTIGLEIMEDL-PDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISV 238 (406)
T ss_pred HHHHHHHHHHhc-CCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccC
Confidence 999999999999 47999999999999999999999999999999999999998862 232 23456778877
Q ss_pred cc
Q 025563 240 FF 241 (251)
Q Consensus 240 ~~ 241 (251)
+.
T Consensus 239 ~~ 240 (406)
T PRK06382 239 KY 240 (406)
T ss_pred CC
Confidence 54
No 20
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=2.7e-49 Score=352.49 Aligned_cols=210 Identities=21% Similarity=0.258 Sum_probs=193.8
Q ss_pred ccchhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEecc
Q 025563 7 MEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTG 86 (251)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ss 86 (251)
|-++++|..+++++...+++|||+++++|++.+|.+||+|+|++||+||||+|++.+++..+.+++...+ .||++|+
T Consensus 2 ~~~~~~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~~---~vv~aSs 78 (322)
T PRK06110 2 MFTLAELEAAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRVR---GVISATR 78 (322)
T ss_pred CCCHHHHHHHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCCc---eEEEECC
Confidence 3368899999999999999999999999998889999999999999999999999999999988775433 3999999
Q ss_pred ChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHH
Q 025563 87 GNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPK 166 (251)
Q Consensus 87 GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~ 166 (251)
||||+|+|++|+++|++|+||||+..++.|+++++.+||+|+.+++ +++++.+.++++++++ ++||++++ |+.+++
T Consensus 79 GN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~~~ 154 (322)
T PRK06110 79 GNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGE--DFQAAREEAARLAAER-GLHMVPSF-HPDLVR 154 (322)
T ss_pred CHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCCC-CChHHh
Confidence 9999999999999999999999999999999999999999999975 6889999999998886 78999998 667775
Q ss_pred HHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 167 IHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 167 ~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
||.++++||++|++ ++|+||+|+|+||+++|++.++++.+|++||++|||++|+++.
T Consensus 155 -G~~t~~~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~ 211 (322)
T PRK06110 155 -GVATYALELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYA 211 (322)
T ss_pred -ccchHHHHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHH
Confidence 99999999999995 7999999999999999999999999999999999999998864
No 21
>PLN02970 serine racemase
Probab=100.00 E-value=2.7e-49 Score=353.12 Aligned_cols=208 Identities=19% Similarity=0.231 Sum_probs=193.3
Q ss_pred chhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccCh
Q 025563 9 DNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGN 88 (251)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN 88 (251)
++++|..+.+++...+++|||++++++++..|.+||+|+|++||+||||||++.+++..+.+++. ...||++|+||
T Consensus 10 ~~~~i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~----~~~vv~aSsGN 85 (328)
T PLN02970 10 DLSSIREARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA----EKGVVTHSSGN 85 (328)
T ss_pred CHHHHHHHHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc----CCeEEEECCcH
Confidence 47899999999999999999999999998888999999999999999999999999999875553 22499999999
Q ss_pred HHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHH
Q 025563 89 TGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH 168 (251)
Q Consensus 89 ~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 168 (251)
||.|+|++|+.+|++|+||||++.++.|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+++ |
T Consensus 86 ~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~la~~~-g~~~~~~~~n~~~~~-g 161 (328)
T PLN02970 86 HAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TVESREAVAARVQQET-GAVLIHPYNDGRVIS-G 161 (328)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcchhh-e
Confidence 99999999999999999999999999999999999999999997 5788888899998874 899999999999886 9
Q ss_pred HhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 169 YETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 169 ~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
|.++++||++|++ .||+||+|+|+||+++|++++||+.+|++||++|||++|+++.
T Consensus 162 ~~t~g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~ 217 (328)
T PLN02970 162 QGTIALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAA 217 (328)
T ss_pred hHHHHHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHH
Confidence 9999999999995 6999999999999999999999999999999999999998764
No 22
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=8.2e-49 Score=364.31 Aligned_cols=227 Identities=43% Similarity=0.691 Sum_probs=198.9
Q ss_pred HHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHH
Q 025563 18 KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIA 97 (251)
Q Consensus 18 ~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 97 (251)
+.+...+++|||++++++++..|.+||+|+|++||+||||+|+|.+++.++.++|++.+|++ ||++|+||||+|+|++|
T Consensus 3 ~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~-vv~~ssGN~g~alA~~a 81 (454)
T TIGR01137 3 DNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDT-IIEPTSGNTGIGLALVA 81 (454)
T ss_pred cchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCCE-EEEeCCcHHHHHHHHHH
Confidence 45677899999999999998888899999999999999999999999999999998888765 99999999999999999
Q ss_pred HHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChH---HHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHH
Q 025563 98 ALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFE---GILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGP 174 (251)
Q Consensus 98 ~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 174 (251)
+++|++|++|||+.+++.|+++++.+||+|+.+++...++ ...+.+++++++.++.+|++||+|+.++.+||.++|+
T Consensus 82 ~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 161 (454)
T TIGR01137 82 AIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGP 161 (454)
T ss_pred HHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHH
Confidence 9999999999999999999999999999999998642233 3356677777765577889999999998779999999
Q ss_pred HHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCC-----CCCceeecccCCcccccc
Q 025563 175 EIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGG-----QPGRLLFFLFFLFFFCFF 245 (251)
Q Consensus 175 EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~-----~~~~~~i~g~g~~~~~~~ 245 (251)
||++|+++.||+||+|+||||+++|++.+|++.+|++||+||||++|+...+. ...++.++|+|.+++|..
T Consensus 162 Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 237 (454)
T TIGR01137 162 EILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILAQPENLNKTGRTPYKVEGIGYDFIPTV 237 (454)
T ss_pred HHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCcccCCCCCCccCCCCCCCCCCCc
Confidence 99999976799999999999999999999999999999999999999643221 223568899998766654
No 23
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=2.8e-49 Score=362.02 Aligned_cols=225 Identities=24% Similarity=0.272 Sum_probs=202.9
Q ss_pred cccchhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEec
Q 025563 6 SMEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETT 85 (251)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s 85 (251)
+|-++++|..+++++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+... ...+|++|
T Consensus 3 ~~~~~~~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aS 78 (403)
T PRK07334 3 LMVTLADIRAAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMS 78 (403)
T ss_pred CCcCHHHHHHHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEEC
Confidence 45578999999999999999999999999998888999999999999999999999999988654432 12399999
Q ss_pred cChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchH
Q 025563 86 GGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANP 165 (251)
Q Consensus 86 sGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~ 165 (251)
+||||+|+|++|+++|++|+||||...++.|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+|+.++
T Consensus 79 sGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~ 155 (403)
T PRK07334 79 AGNHAQGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TLDEARAHARELAEEE-GLTFVHPYDDPAVI 155 (403)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEecCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999975 6889999999998885 88999999999998
Q ss_pred HHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccC---C----CCCceeecccC
Q 025563 166 KIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNG---G----QPGRLLFFLFF 238 (251)
Q Consensus 166 ~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~---~----~~~~~~i~g~g 238 (251)
+ ||.|+++||++|+ +.+|+||+|+|+||+++|++++|++.+|++||++|||++|++++. + ...++.++||+
T Consensus 156 ~-g~~t~~~Ei~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 233 (403)
T PRK07334 156 A-GQGTVALEMLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIA 233 (403)
T ss_pred H-hHHHHHHHHHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCCCccceec
Confidence 5 9999999999999 579999999999999999999999999999999999999988753 1 12356788888
Q ss_pred C
Q 025563 239 L 239 (251)
Q Consensus 239 ~ 239 (251)
.
T Consensus 234 ~ 234 (403)
T PRK07334 234 V 234 (403)
T ss_pred C
Confidence 4
No 24
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=1.4e-48 Score=347.00 Aligned_cols=208 Identities=21% Similarity=0.294 Sum_probs=191.8
Q ss_pred chhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccCh
Q 025563 9 DNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGN 88 (251)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN 88 (251)
++++|..+++++...+++|||+++++|++.+|.+||+|+|++||+||||+|++.+++..+.+... ..++|++|+||
T Consensus 2 ~~~~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN 77 (317)
T TIGR02991 2 TLQDIERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGN 77 (317)
T ss_pred CHHHHHHHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCH
Confidence 37899999999999999999999999998888999999999999999999999999988654321 12399999999
Q ss_pred HHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHH
Q 025563 89 TGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH 168 (251)
Q Consensus 89 ~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 168 (251)
||.|+|++|+++|++|++|||+..++.|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+++ |
T Consensus 78 ~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~~-g 153 (317)
T TIGR02991 78 HGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQDDAQEEVERLVADR-GLTMLPPFDHPDIVA-G 153 (317)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeeCCCCChHHHh-h
Confidence 99999999999999999999999999999999999999999997 5788888999998876 889999999999985 9
Q ss_pred HhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 169 YETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 169 ~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
|.++++||++|+ +++|+||+|+|+||+++|++++||+.+|++||+||||++++++.
T Consensus 154 ~~t~a~Ei~~q~-~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~ 209 (317)
T TIGR02991 154 QGTLGLEVVEQM-PDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMK 209 (317)
T ss_pred HHHHHHHHHHhC-CCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHH
Confidence 999999999999 46899999999999999999999999999999999999888775
No 25
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=1.1e-48 Score=348.61 Aligned_cols=210 Identities=21% Similarity=0.263 Sum_probs=193.5
Q ss_pred cccchhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEec
Q 025563 6 SMEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETT 85 (251)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s 85 (251)
.|.+++++..+++++...+++|||++++++++..|.+||+|+|++||+||||+|++.+++.++.+.+. ..+||++|
T Consensus 4 ~~~~~~~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aS 79 (321)
T PRK07048 4 LLPTYDDVAAAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR----RAGVVTFS 79 (321)
T ss_pred ccCCHHHHHHHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc----CCcEEEeC
Confidence 45678899999999999999999999999988888999999999999999999999999998775432 12399999
Q ss_pred cChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchH
Q 025563 86 GGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANP 165 (251)
Q Consensus 86 sGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~ 165 (251)
+||||+|+|++|+.+|++|++|||...++.|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+|+.++
T Consensus 80 sGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~--~~~~~~~~a~~l~~~~-g~~~~~~~~~~~~~ 156 (321)
T PRK07048 80 SGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDR--YTEDREEIGRRLAEER-GLTLIPPYDHPHVI 156 (321)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEECCCCCcchh
Confidence 99999999999999999999999999999999999999999999996 4778888889998886 78999999999998
Q ss_pred HHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccc
Q 025563 166 KIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAML 224 (251)
Q Consensus 166 ~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~ 224 (251)
+ ||.++++||++|++ .||+||+|+|+||+++|++.++++.+|++||+||||++|+++
T Consensus 157 ~-g~~t~~~EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~ 213 (321)
T PRK07048 157 A-GQGTAAKELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDG 213 (321)
T ss_pred h-ccchHHHHHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhH
Confidence 5 99999999999994 799999999999999999999999999999999999999864
No 26
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=1.2e-48 Score=359.48 Aligned_cols=228 Identities=21% Similarity=0.293 Sum_probs=199.5
Q ss_pred chhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccCh
Q 025563 9 DNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGN 88 (251)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN 88 (251)
++++|..+++++.+.+++|||++++++++..|++||+|+|++|||||||+|+|.+++..+.+.. . ...||++|+||
T Consensus 8 ~~~~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~-~---~~~Vv~aSsGN 83 (420)
T PRK08639 8 SAKDIDKAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEE-L---AAGVVCASAGN 83 (420)
T ss_pred CHHHHHHHHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHh-h---CCEEEEECccH
Confidence 5899999999999999999999999999888999999999999999999999999998843221 1 22499999999
Q ss_pred HHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC-CCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHH
Q 025563 89 TGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD-QAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKI 167 (251)
Q Consensus 89 ~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~ 167 (251)
||.++|++|+++|++|+||||+.++..|++.++.+||+|+.|. ...+++++.+.+.+++++. |++|++||+|+.+++
T Consensus 84 ~g~alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~~~- 161 (420)
T PRK08639 84 HAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET-GATFIPPFDDPDVIA- 161 (420)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhc-CCcccCCCCChhHhc-
Confidence 9999999999999999999999999999999999999754432 1236899999999998886 899999999999985
Q ss_pred HHhhHHHHHhhhhCCC--CCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccC----CCC-----Cceeecc
Q 025563 168 HYETTGPEIWKDSGGD--VDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNG----GQP-----GRLLFFL 236 (251)
Q Consensus 168 g~~t~~~EI~~q~~~~--~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~----~~~-----~~~~i~g 236 (251)
||.|+|.||++|+++. ||+||+|+|+||+++|++.++++.+|++||+||||++|+++.. +.+ ....++|
T Consensus 162 G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g 241 (420)
T PRK08639 162 GQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDG 241 (420)
T ss_pred chhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecc
Confidence 9999999999999655 9999999999999999999999999999999999999988742 222 2455677
Q ss_pred cCCccc
Q 025563 237 FFLFFF 242 (251)
Q Consensus 237 ~g~~~~ 242 (251)
++...+
T Consensus 242 i~v~~~ 247 (420)
T PRK08639 242 AAVARV 247 (420)
T ss_pred cccCCc
Confidence 776544
No 27
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=1.5e-48 Score=349.19 Aligned_cols=207 Identities=20% Similarity=0.223 Sum_probs=191.5
Q ss_pred chhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccCh
Q 025563 9 DNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGN 88 (251)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN 88 (251)
++++|..+++++...+++|||+++++|++.+|++||+|+|++||+||||+|++.+++.++.++|.+. .+||++|+||
T Consensus 6 ~~~~i~~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN 82 (338)
T PRK06608 6 NPQNIAAAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP---DKIVAYSTGN 82 (338)
T ss_pred CHHHHHHHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC---CeEEEECCCH
Confidence 4899999999999999999999999999989999999999999999999999999999999988643 2499999999
Q ss_pred HHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHH
Q 025563 89 TGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH 168 (251)
Q Consensus 89 ~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 168 (251)
||+|+|++|+++|++|++|||..+++.|+++++.+||+|+.++. .+++.+.+++ +++ +++||++||+|+.+++ |
T Consensus 83 ~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~~~~~~~~~~~-g 156 (338)
T PRK06608 83 HGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYIHPSDSDSTIA-G 156 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEcCCCCCHHHhc-c
Confidence 99999999999999999999999999999999999999999974 3677777777 554 4889999999999985 9
Q ss_pred HhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccc
Q 025563 169 YETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAML 224 (251)
Q Consensus 169 ~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~ 224 (251)
|.+++.||++|++.+||+||+|+|+||+++|++.++++.++++||+||||++|+++
T Consensus 157 ~~t~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~ 212 (338)
T PRK06608 157 AGTLCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDA 212 (338)
T ss_pred HHHHHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHH
Confidence 99999999999976899999999999999999999999999999999999999765
No 28
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=3.7e-48 Score=343.33 Aligned_cols=217 Identities=25% Similarity=0.361 Sum_probs=194.3
Q ss_pred ccchhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEecc
Q 025563 7 MEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTG 86 (251)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ss 86 (251)
|.++++|..+++++...+++|||+++++++.. +.+||+|+|++|||||||+|++.+++..+.+ + +. .||++|+
T Consensus 4 ~~~~~~i~~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~----~~-~vv~aSs 76 (310)
T PRK08246 4 MITRSDVRAAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P----AA-GVVAASG 76 (310)
T ss_pred CCCHHHHHHHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c----CC-eEEEeCC
Confidence 56799999999999999999999999998876 7899999999999999999999999988655 2 23 4999999
Q ss_pred ChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHH
Q 025563 87 GNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPK 166 (251)
Q Consensus 87 GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~ 166 (251)
||||+|+|++|+++|++|+||||+.+++.|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+|+.+++
T Consensus 77 GN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~i~ 153 (310)
T PRK08246 77 GNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EYADALEAAQAFAAET-GALLCHAYDQPEVLA 153 (310)
T ss_pred CHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeCCCCCChhhhc
Confidence 9999999999999999999999999999999999999999999986 5788999999988876 899999999999985
Q ss_pred HHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccC----CCCCceeecccC
Q 025563 167 IHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNG----GQPGRLLFFLFF 238 (251)
Q Consensus 167 ~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~----~~~~~~~i~g~g 238 (251)
||.++++||++|+ +.||+||+|+|+||+++|++.+|+. ++||++|||++|+++.. +.+.++...+++
T Consensus 154 -g~~t~~~Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~ 224 (310)
T PRK08246 154 -GAGTLGLEIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIA 224 (310)
T ss_pred -chHHHHHHHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCCce
Confidence 9999999999999 5799999999999999999999964 48999999999987753 555555555543
No 29
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=2.1e-48 Score=356.35 Aligned_cols=228 Identities=20% Similarity=0.272 Sum_probs=197.9
Q ss_pred hhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHH
Q 025563 11 HHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTG 90 (251)
Q Consensus 11 ~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g 90 (251)
++|..+.+++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++..+.+.. .. ..||++|+||||
T Consensus 1 ~~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~-~~---~gvv~aSsGN~g 76 (409)
T TIGR02079 1 QDIEAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQ-LA---KGVVCASAGNHA 76 (409)
T ss_pred ChHHHHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHh-hC---CEEEEECccHHH
Confidence 36788999999999999999999999888999999999999999999999999998743322 12 249999999999
Q ss_pred HHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC-CCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHH
Q 025563 91 IGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD-QAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHY 169 (251)
Q Consensus 91 ~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~ 169 (251)
+++|++|+++|++|+||||+.++..|++.++.+||+++.+. ...+++++.+.+.+++++. +++|++||+|+.+++ ||
T Consensus 77 ~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g~~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~~~-g~ 154 (409)
T TIGR02079 77 QGFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVGDTFDQCAAAAREHVEDH-GGTFIPPFDDPRIIE-GQ 154 (409)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhc-CCEEeCCCCCHhHhh-hh
Confidence 99999999999999999999999999999999999754321 1236899999999998886 789999999999985 99
Q ss_pred hhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccC----CCC-----CceeecccCCc
Q 025563 170 ETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNG----GQP-----GRLLFFLFFLF 240 (251)
Q Consensus 170 ~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~----~~~-----~~~~i~g~g~~ 240 (251)
.|++.||++|+...||+||+|+|+||+++|++.+||+.+|++||+||||++|+++.. +.+ .+...+|++.+
T Consensus 155 ~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~ 234 (409)
T TIGR02079 155 GTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVK 234 (409)
T ss_pred HHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCC
Confidence 999999999997669999999999999999999999999999999999999988753 322 23456777776
Q ss_pred cccc
Q 025563 241 FFCF 244 (251)
Q Consensus 241 ~~~~ 244 (251)
.++.
T Consensus 235 ~~g~ 238 (409)
T TIGR02079 235 RVGD 238 (409)
T ss_pred CCcH
Confidence 6554
No 30
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-48 Score=345.52 Aligned_cols=225 Identities=21% Similarity=0.206 Sum_probs=199.0
Q ss_pred hhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChH
Q 025563 10 NHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNT 89 (251)
Q Consensus 10 ~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~ 89 (251)
+++|..+++++...+++|||+++++|++..|.+||+|+|++|||||||+|++.+++..+.+... ...+|++|+|||
T Consensus 4 ~~~i~~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~ 79 (317)
T PRK06815 4 FDAILEAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNH 79 (317)
T ss_pred HHHHHHHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChH
Confidence 6789999999999999999999999998889999999999999999999999999987543321 223999999999
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHH
Q 025563 90 GIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHY 169 (251)
Q Consensus 90 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~ 169 (251)
|+|+|++|+++|++|+||||..+++.|++.++.+||+|+.+++ +++++...+++++++. +.+|++||+|+.+++ ||
T Consensus 80 g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~-g~ 155 (317)
T PRK06815 80 GQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGG--DALNAELAARRAAEQQ-GKVYISPYNDPQVIA-GQ 155 (317)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEecCCCChhhhc-ch
Confidence 9999999999999999999999999999999999999999997 4788888888888875 889999999999885 99
Q ss_pred hhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccC----CC-----CCceeecccCCc
Q 025563 170 ETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNG----GQ-----PGRLLFFLFFLF 240 (251)
Q Consensus 170 ~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~----~~-----~~~~~i~g~g~~ 240 (251)
.++++||++|++ .+|+||+|+|+||+++|++.+|++.+|++||+||||++|+++.. +. ..++.++|++.+
T Consensus 156 ~t~a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~ 234 (317)
T PRK06815 156 GTIGMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGG 234 (317)
T ss_pred hHHHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccC
Confidence 999999999995 69999999999999999999999999999999999999988753 22 223466777555
Q ss_pred ccc
Q 025563 241 FFC 243 (251)
Q Consensus 241 ~~~ 243 (251)
..|
T Consensus 235 ~~~ 237 (317)
T PRK06815 235 VEP 237 (317)
T ss_pred Ccc
Confidence 443
No 31
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=3.3e-48 Score=342.75 Aligned_cols=207 Identities=27% Similarity=0.343 Sum_probs=193.0
Q ss_pred hhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChH
Q 025563 10 NHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNT 89 (251)
Q Consensus 10 ~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~ 89 (251)
+++|..+++.|.+.+++|||+++++|++.+|.+||+|+|++||+||||||.+.+++.++.+.+. .. .||++|+|||
T Consensus 1 ~~~~~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~---~~-~iv~~ssGN~ 76 (304)
T cd01562 1 LEDILAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER---AK-GVVAASAGNH 76 (304)
T ss_pred ChHHHHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc---CC-cEEEECCCHH
Confidence 4689999999999999999999999998888999999999999999999999999999887762 13 3999999999
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHH
Q 025563 90 GIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHY 169 (251)
Q Consensus 90 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~ 169 (251)
|+|+|++|+++|++|++|+|++.++.|+++++.+||+|+.+++ +++++.+.+++++++. +++|++|++|+.+++ ||
T Consensus 77 g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~a~~la~~~-~~~~~~~~~n~~~~~-g~ 152 (304)
T cd01562 77 AQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE--DFDEAEAKARELAEEE-GLTFIHPFDDPDVIA-GQ 152 (304)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcchhc-cH
Confidence 9999999999999999999999999999999999999999997 4889999999999886 889999999999985 99
Q ss_pred hhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 170 ETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 170 ~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
.++++||++|++ .||+||+|+||||+++|++++|++.++++||++|||.+++++.
T Consensus 153 ~~~~~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~ 207 (304)
T cd01562 153 GTIGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMA 207 (304)
T ss_pred HHHHHHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHH
Confidence 999999999996 4999999999999999999999999999999999999998764
No 32
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=5.4e-48 Score=343.04 Aligned_cols=215 Identities=23% Similarity=0.261 Sum_probs=189.6
Q ss_pred CCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEE
Q 025563 26 NTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLI 105 (251)
Q Consensus 26 ~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ 105 (251)
+|||++++++++.+|++||+|+|++||+||||+|++.+++.++.++|. .++.+ ||++|+||||+|+|++|+.+|++|+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~~~~-vv~aSsGN~g~alA~~a~~~G~~~~ 78 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NECVH-VVCSSGGNAGLAAAYAARKLGVPCT 78 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-ccCCe-EEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 699999999998888999999999999999999999999999999885 23344 9999999999999999999999999
Q ss_pred EEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhCC--C
Q 025563 106 IVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGG--D 183 (251)
Q Consensus 106 ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~--~ 183 (251)
||||+.+++.|++.++.+||+|+.+++. .++++.+.+++++++.++++|++||+|+.+++ ||.++++||++|++. .
T Consensus 79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~~-g~~t~~~Ei~~q~~~~~~ 156 (316)
T cd06448 79 IVVPESTKPRVVEKLRDEGATVVVHGKV-WWEADNYLREELAENDPGPVYVHPFDDPLIWE-GHSSMVDEIAQQLQSQEK 156 (316)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEECCc-hHHHHHHHHHHHHhccCCcEEeCCCCCchhhc-cccHHHHHHHHHccccCC
Confidence 9999999999999999999999999874 26777777888887765889999999999996 999999999999975 5
Q ss_pred CCEEEEecCchhHHHHHHHHHHhhC-CCcEEEEEeCCCCccccC----CCC-----CceeecccCCccccc
Q 025563 184 VDILVAGIGTGGTVTGSGRFLKEKN-PNIKVYGVEPTESAMLNG----GQP-----GRLLFFLFFLFFFCF 244 (251)
Q Consensus 184 ~d~vv~~vGtGg~~~Gi~~~~~~~~-~~~~vigVep~~s~~~~~----~~~-----~~~~i~g~g~~~~~~ 244 (251)
||+||+|+|+||+++|++++|++.+ +++||++|||++|+++.. +.+ .+....|||..+++.
T Consensus 157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~ 227 (316)
T cd06448 157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSS 227 (316)
T ss_pred CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCH
Confidence 9999999999999999999999996 999999999999987753 221 234555888876654
No 33
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=9.7e-48 Score=358.78 Aligned_cols=199 Identities=27% Similarity=0.371 Sum_probs=185.3
Q ss_pred HhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHH
Q 025563 19 DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAA 98 (251)
Q Consensus 19 ~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 98 (251)
++...+.+|||+++++|++.+|++||+|+|++||+||||+|+|.+.+..+.+... .. .||++|+||||+++|++|+
T Consensus 30 ~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~-~~---GVV~aSaGNha~gvA~aA~ 105 (521)
T PRK12483 30 RVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL-AR---GVITASAGNHAQGVALAAA 105 (521)
T ss_pred HHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh-cC---cEEEECCCHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999987653322 12 3999999999999999999
Q ss_pred HCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhh
Q 025563 99 LRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWK 178 (251)
Q Consensus 99 ~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~ 178 (251)
++|++|+||||..++..|++.++.+||+|+.+++ +++++.+.+++++++. +++|++||+|+.+++ ||.|++.||++
T Consensus 106 ~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~~d~a~~~A~~la~e~-g~~~v~pfdd~~via-GqgTig~EI~e 181 (521)
T PRK12483 106 RLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--SFPDALAHALKLAEEE-GLTFVPPFDDPDVIA-GQGTVAMEILR 181 (521)
T ss_pred HhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeeCCCCChHHHH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999986 6899999999999887 889999999999995 99999999999
Q ss_pred hhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 179 DSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 179 q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
|++..+|+||+|+|+||+++|++.++|+.+|++|||||||++|+++.
T Consensus 182 Q~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~ 228 (521)
T PRK12483 182 QHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQ 228 (521)
T ss_pred HhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhh
Confidence 99656999999999999999999999999999999999999998875
No 34
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=1.2e-47 Score=348.54 Aligned_cols=213 Identities=19% Similarity=0.249 Sum_probs=191.7
Q ss_pred chhhHHHHHHHhhcc----------------cCCCcceecccccccCC--------ceEEEEeCCCCC-CCchhhHHHHH
Q 025563 9 DNHHKRAIKKDATQL----------------IGNTPMVYLNNVVDGCV--------ARIAAKLEMMEP-CCSVKDRIALS 63 (251)
Q Consensus 9 ~~~~~~~~~~~v~~~----------------~~~TPl~~~~~l~~~~g--------~~i~~K~E~~~p-tGS~K~R~a~~ 63 (251)
++++|..+.+++... +++|||+++++|++.+| .+||+|+|++|| +||||||++.+
T Consensus 19 ~~~~i~~a~~~i~~~~~~~~~~~~~~~~~~~~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~ 98 (404)
T cd06447 19 SREDIFDAEARLKRFAPYIAKVFPETAASHGIIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIY 98 (404)
T ss_pred CHHHHHHHHHHHhhcchhhhhhCccccccCCccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHH
Confidence 477899999999888 99999999999987654 799999999999 99999999999
Q ss_pred HHHH-----HHHcCCCCCCC----------------eEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHH
Q 025563 64 MIKD-----AEEKGLITPGK----------------SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRA 122 (251)
Q Consensus 64 ~l~~-----a~~~g~~~~g~----------------~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~ 122 (251)
++.. +.+.|.+.+|. .+||++|+||||.++|++|+.+|++|+||||+++++.|++.++.
T Consensus 99 ~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira 178 (404)
T cd06447 99 EVLKHAEKLALEHGLLTLEDDYSKLASEKFRKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRS 178 (404)
T ss_pred HHHHHhHHHHHHhCCCCcccchhhhhhhhhhhcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHH
Confidence 9864 67788877765 35999999999999999999999999999999999999999999
Q ss_pred cCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhCC---C-----CCEEEEecCch
Q 025563 123 LGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGG---D-----VDILVAGIGTG 194 (251)
Q Consensus 123 ~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~---~-----~d~vv~~vGtG 194 (251)
+||+|+.+++ +++++.+.++++++++++.+|+++++++..+ +||.|+++||++|+++ + ||+||+|+|+|
T Consensus 179 ~GAeVv~v~~--~~~~a~~~a~~la~~~~~~~~v~~~n~~~~i-aG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~G 255 (404)
T cd06447 179 KGVTVVEYET--DYSKAVEEGRKQAAADPMCYFVDDENSRDLF-LGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVG 255 (404)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHHHCCCeEeCCCCCchhHH-hhHHHHHHHHHHHhhhccCccccCCCCEEEEecCcc
Confidence 9999999986 6899999999999887678899997666666 5999999999999952 3 55899999999
Q ss_pred hHHHHHHHHHHhh-CCCcEEEEEeCCCCccc
Q 025563 195 GTVTGSGRFLKEK-NPNIKVYGVEPTESAML 224 (251)
Q Consensus 195 g~~~Gi~~~~~~~-~~~~~vigVep~~s~~~ 224 (251)
|+++|++++||+. .|+++|++|||++++++
T Consensus 256 Gli~GIa~~lK~~~~p~~kVigVeP~~ap~~ 286 (404)
T cd06447 256 GAPGGVAFGLKLIFGDNVHCFFAEPTHSPCM 286 (404)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEccCCChHH
Confidence 9999999999997 78999999999999876
No 35
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=3.6e-47 Score=349.22 Aligned_cols=220 Identities=19% Similarity=0.241 Sum_probs=195.5
Q ss_pred ccccccchhhHHHHHHHhhcc----------------cCCCcceecccccccCC--------ceEEEEeCCCCC-CCchh
Q 025563 3 LEASMEDNHHKRAIKKDATQL----------------IGNTPMVYLNNVVDGCV--------ARIAAKLEMMEP-CCSVK 57 (251)
Q Consensus 3 ~~~~~~~~~~~~~~~~~v~~~----------------~~~TPl~~~~~l~~~~g--------~~i~~K~E~~~p-tGS~K 57 (251)
++..+.+++++..++.++... +++|||++++.+++.+| .+||+|+|++|| |||||
T Consensus 36 ~~~~~~~~~di~~A~~~i~~~~~~~~~~~~~~~~~~~~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK 115 (441)
T PRK02991 36 LPYVGLTEADVQDAEARLKRFAPYLAKAFPETAATGGIIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIK 115 (441)
T ss_pred cccCCCCHHHHHHHHHHHHhhhhhhhhhCccccccCCccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChH
Confidence 345566788999999999977 89999999999987665 699999999999 99999
Q ss_pred hHHHHHHHHH-----HHHcCCCCCCC----------------eEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHH
Q 025563 58 DRIALSMIKD-----AEEKGLITPGK----------------SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMER 116 (251)
Q Consensus 58 ~R~a~~~l~~-----a~~~g~~~~g~----------------~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~ 116 (251)
+|++.+++.. +.++|.+.++. .+||++|+||||.|+|++|+++|++|+||||+++++.|
T Consensus 116 ~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K 195 (441)
T PRK02991 116 ARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWK 195 (441)
T ss_pred HHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHH
Confidence 9999999875 45677665553 35999999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhCC--------CCCEEE
Q 025563 117 RIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGG--------DVDILV 188 (251)
Q Consensus 117 ~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~--------~~d~vv 188 (251)
++.++.+||+|+.+++ +|+++.+.++++++++++.+|+++++++..+ +||.|+++||++|+.+ .||+||
T Consensus 196 ~~~ir~~GAeVi~~~~--~~~~a~~~A~~la~~~~~~~~~~~~~~~~~i-aG~~Tig~EI~eQl~~~~~~vD~~~Pd~Vv 272 (441)
T PRK02991 196 KDKLRSHGVTVVEYEG--DYGVAVEEGRKAAESDPNCYFIDDENSRTLF-LGYAVAGLRLKAQLAEQGIVVDADHPLFVY 272 (441)
T ss_pred HHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhcCCeEeCCCCCchhHH-HhHHHHHHHHHHHhhhccCccccCCCCEEE
Confidence 9999999999999997 6899999999998887678999999888887 5999999999999952 267999
Q ss_pred EecCchhHHHHHHHHHHhh-CCCcEEEEEeCCCCcccc
Q 025563 189 AGIGTGGTVTGSGRFLKEK-NPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 189 ~~vGtGg~~~Gi~~~~~~~-~~~~~vigVep~~s~~~~ 225 (251)
+|+|+||+++|++.+|++. +|++|||+|||++|+++.
T Consensus 273 vpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~~ 310 (441)
T PRK02991 273 LPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCML 310 (441)
T ss_pred EEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHHH
Confidence 9999999999999999997 688999999999998763
No 36
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=2.6e-47 Score=346.95 Aligned_cols=190 Identities=28% Similarity=0.395 Sum_probs=178.8
Q ss_pred CcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEE
Q 025563 27 TPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLII 106 (251)
Q Consensus 27 TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~i 106 (251)
|||+++++|++..|++||+|+|++|||||||+|+|.+++..+.++++. ..||++|+||||+++|++|+++|++|+|
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~----~~vv~aSsGN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQ----RGVVAASAGNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccC----CEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 899999999998999999999999999999999999999999887753 2499999999999999999999999999
Q ss_pred EecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhCCCCCE
Q 025563 107 VMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDI 186 (251)
Q Consensus 107 vvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~~~d~ 186 (251)
|||+.++..|++.++.+||+|+.++. +++++++.+++++++. +++|++||+|+.+++ ||.|++.||++|++ ++|+
T Consensus 77 v~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~~~-g~~t~~~Ei~~q~~-~~D~ 151 (380)
T TIGR01127 77 VMPESAPPSKVKATKSYGAEVILHGD--DYDEAYAFATSLAEEE-GRVFVHPFDDEFVMA-GQGTIGLEIMEDIP-DVDT 151 (380)
T ss_pred EEcCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCChhhhh-hhHHHHHHHHHhCC-CCCE
Confidence 99999999999999999999999976 6899999999998886 889999999999984 99999999999994 7999
Q ss_pred EEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 187 LVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 187 vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
||+|+|+||+++|++.++|+.+|++||+||||++|+++.
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~ 190 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMY 190 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHH
Confidence 999999999999999999999999999999999998764
No 37
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=1.5e-46 Score=344.02 Aligned_cols=233 Identities=19% Similarity=0.190 Sum_probs=200.6
Q ss_pred chhhHHHHHHHhhc----------------ccCCCcceecccccccC--------CceEEEEeCCCCC-CCchhhHHHHH
Q 025563 9 DNHHKRAIKKDATQ----------------LIGNTPMVYLNNVVDGC--------VARIAAKLEMMEP-CCSVKDRIALS 63 (251)
Q Consensus 9 ~~~~~~~~~~~v~~----------------~~~~TPl~~~~~l~~~~--------g~~i~~K~E~~~p-tGS~K~R~a~~ 63 (251)
++++|..+..++.. .+++|||++++++++.+ +.+||+|+|++|| +||||+|++.+
T Consensus 37 ~~~~i~~a~~~~~~~~~~~~~~fp~~~~~~~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~ 116 (431)
T TIGR02035 37 KAQEVAEAEARLQRFAPYIAKVFPETAATGGIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIY 116 (431)
T ss_pred CHHHHHHHHHHHHhhhhhHHHhCccccccCCccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHH
Confidence 57788888888888 99999999999998744 5799999999999 99999999999
Q ss_pred HHHH-----HHHcCCCCCCC----------------eEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHH
Q 025563 64 MIKD-----AEEKGLITPGK----------------SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRA 122 (251)
Q Consensus 64 ~l~~-----a~~~g~~~~g~----------------~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~ 122 (251)
++.. +++.|.+.++. .+||++|+||||.++|++|+.+|++|+||||++++..|++.++.
T Consensus 117 ~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~ 196 (431)
T TIGR02035 117 EVLKHAEELALEAGLLKLDDDYSILAEKKFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRS 196 (431)
T ss_pred HHHHhhHHHHHHcCCCCcCcchhhhcchhhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH
Confidence 9875 66788876653 35999999999999999999999999999999999999999999
Q ss_pred cCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhCC--------CCCEEEEecCch
Q 025563 123 LGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGG--------DVDILVAGIGTG 194 (251)
Q Consensus 123 ~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~--------~~d~vv~~vGtG 194 (251)
+||+|+.+++ +|+++.+.+++++++.++.||+++. |+.++.+||.|+++||++|+.+ .||+|++|+|+|
T Consensus 197 ~GAeVv~~~~--~~~~a~~~A~~la~~~~~~~~~d~~-n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~G 273 (431)
T TIGR02035 197 KGVTVVEYES--DYGVAVEEGRKNADADPMCYFVDDE-NSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVG 273 (431)
T ss_pred cCCEEEEECC--CHHHHHHHHHHHHHhcCCeEECCCC-CcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcC
Confidence 9999999997 6899999999999887677888874 5555557999999999999952 477999999999
Q ss_pred hHHHHHHHHHHhh-CCCcEEEEEeCCCCcccc----CCC-----------CCceeecccCCccccc
Q 025563 195 GTVTGSGRFLKEK-NPNIKVYGVEPTESAMLN----GGQ-----------PGRLLFFLFFLFFFCF 244 (251)
Q Consensus 195 g~~~Gi~~~~~~~-~~~~~vigVep~~s~~~~----~~~-----------~~~~~i~g~g~~~~~~ 244 (251)
|+++|++.+||+. +|++|||+|||++|+++. .+. .+.+..+||+.+..+.
T Consensus 274 Gli~Gia~~lK~~~~~~vkvi~VEp~~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~ 339 (431)
T TIGR02035 274 GGPGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSG 339 (431)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeeCCCHHHHHHHhcCCCccccccccCCCCCceeccccCCCcch
Confidence 9999999999997 889999999999998753 122 2245666777665443
No 38
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=1.3e-46 Score=336.27 Aligned_cols=213 Identities=23% Similarity=0.258 Sum_probs=190.8
Q ss_pred cchhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccC
Q 025563 8 EDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGG 87 (251)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssG 87 (251)
.++++|..+++++...+.+|||++++.+ +||+|+|++|||||||+|++.+++..+.+.+..+ .||++|+|
T Consensus 21 ~~~~~i~~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~~----~VV~aSsG 90 (349)
T PRK08813 21 VSVADVLAAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGDER----PVICASAG 90 (349)
T ss_pred CCHHHHHHHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCCC----eEEEECCC
Confidence 3578999999999999999999998765 4999999999999999999999999999888632 39999999
Q ss_pred hHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHH
Q 025563 88 NTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKI 167 (251)
Q Consensus 88 N~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~ 167 (251)
|||.|+|++|+++|++|+||||.+.++.|++.++.+||+|+.+++ +|+++.+.+++++++. +++|+++|+|+.+++
T Consensus 91 N~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~~~a~~~a~~la~~~-g~~~v~~~~np~~i~- 166 (349)
T PRK08813 91 NHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SYDEAYAFARELADQN-GYRFLSAFDDPDVIA- 166 (349)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCccCChHHHH-
Confidence 999999999999999999999999999999999999999999976 6899999999999886 899999999999996
Q ss_pred HHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccC---CC-----CCceeecccCC
Q 025563 168 HYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNG---GQ-----PGRLLFFLFFL 239 (251)
Q Consensus 168 g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~---~~-----~~~~~i~g~g~ 239 (251)
||.|+++||++| .||+||+|+|+||+++|++.+||+ +.+||+||||++|+++.. +. +.++..+|++.
T Consensus 167 G~~Tig~EI~e~---~pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~ 241 (349)
T PRK08813 167 GQGTVGIELAAH---APDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKV 241 (349)
T ss_pred HHHHHHHHHHcC---CCCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHcCCCcccCCCCceeccccc
Confidence 999999999987 379999999999999999999995 469999999999987531 21 22456677764
No 39
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=2.9e-47 Score=342.77 Aligned_cols=216 Identities=24% Similarity=0.307 Sum_probs=191.6
Q ss_pred cccccchhhHHHHHH---HhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeE
Q 025563 4 EASMEDNHHKRAIKK---DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSV 80 (251)
Q Consensus 4 ~~~~~~~~~~~~~~~---~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~ 80 (251)
+-.|+++.+..++.+ +++..+|+|||+++++|++.+|++||+|+|++||+||||||++.+++.++.++|. + +
T Consensus 3 ~~~~~ry~~~lp~~~~~~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~----~-~ 77 (351)
T PRK06352 3 KGLLEKYKEYLPVTDKTPMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA----E-A 77 (351)
T ss_pred CchHHHHHHhCCCCCCcCccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC----C-E
Confidence 345666666665544 4778999999999999988888999999999999999999999999999999884 3 4
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCC-CcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSI-ASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQF 159 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 159 (251)
||++|+||||+|+|++|+++|++|+||||+. .+..|+++++.+||+|+.+++ +++++.+.+++++++. ++++++ +
T Consensus 78 vV~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~ 153 (351)
T PRK06352 78 VICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--NFDEALKSVRELAETE-AVTLVN-S 153 (351)
T ss_pred EEEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-Cccccc-C
Confidence 9999999999999999999999999999997 589999999999999999987 5888999999998875 666666 4
Q ss_pred CCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCC-----cEEEEEeCCCCccccCCCC
Q 025563 160 ENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPN-----IKVYGVEPTESAMLNGGQP 229 (251)
Q Consensus 160 ~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~-----~~vigVep~~s~~~~~~~~ 229 (251)
.|+.+++ ||.++++||++|++..||+||+|+|+||+++|++++|++.+++ +|||+|||++|+++..+.+
T Consensus 154 ~n~~~~~-G~~t~~~EI~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~ 227 (351)
T PRK06352 154 VNPYRLE-GQKTAAFEICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKP 227 (351)
T ss_pred CCcccee-eHHHHHHHHHHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCC
Confidence 5999996 9999999999999767999999999999999999999998876 8999999999987765544
No 40
>PLN02550 threonine dehydratase
Probab=100.00 E-value=9e-47 Score=354.52 Aligned_cols=199 Identities=22% Similarity=0.370 Sum_probs=184.9
Q ss_pred HhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHH
Q 025563 19 DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAA 98 (251)
Q Consensus 19 ~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 98 (251)
++...+.+|||+++++|++.+|++||+|+|++||+||||+|++.+.+..+.+.. ..+| ||++|+||||+++|++|+
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~-~~~G---VV~aSaGNhAqgvA~aA~ 177 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQ-LDKG---VICSSAGNHAQGVALSAQ 177 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhc-CCCC---EEEECCCHHHHHHHHHHH
Confidence 677899999999999999999999999999999999999999999999875442 2233 999999999999999999
Q ss_pred HCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhh
Q 025563 99 LRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWK 178 (251)
Q Consensus 99 ~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~ 178 (251)
++|++|+||||+.++..|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.++. ||.|+|.||++
T Consensus 178 ~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~--~~dea~~~A~~la~e~-g~~fi~pfddp~via-GqgTig~EI~e 253 (591)
T PLN02550 178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGD--SYDEAQAYAKQRALEE-GRTFIPPFDHPDVIA-GQGTVGMEIVR 253 (591)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEECCCCChHHHH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999986 5899999999998886 789999999999995 99999999999
Q ss_pred hhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 179 DSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 179 q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
|+...+|+||+|+|+||+++|++.++|+.+|++|||||||++++++.
T Consensus 254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~ 300 (591)
T PLN02550 254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMA 300 (591)
T ss_pred HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHH
Confidence 99656999999999999999999999999999999999999998875
No 41
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=1.4e-46 Score=350.92 Aligned_cols=200 Identities=27% Similarity=0.365 Sum_probs=185.2
Q ss_pred HhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHH
Q 025563 19 DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAA 98 (251)
Q Consensus 19 ~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 98 (251)
++.+.+++|||+++++|++.+|.+||+|+|++||+||||+|+|.+++..+..... ...||++|+||||+++|++|+
T Consensus 10 ~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~aa~ 85 (499)
T TIGR01124 10 RVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFSAA 85 (499)
T ss_pred HhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHHHH
Confidence 7889999999999999999899999999999999999999999999988643322 224999999999999999999
Q ss_pred HCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhh
Q 025563 99 LRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWK 178 (251)
Q Consensus 99 ~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~ 178 (251)
++|++|+||||+.++..|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.++. ||.|+|.||++
T Consensus 86 ~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~--~~d~a~~~a~~la~~~-g~~~i~p~~~~~~i~-G~gtig~EI~~ 161 (499)
T TIGR01124 86 RLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA--NFDDAKAKAIELSQEK-GLTFIHPFDDPLVIA-GQGTLALEILR 161 (499)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc--CHHHHHHHHHHHHHhc-CCEeeCCCCChHHHH-hhHHHHHHHHH
Confidence 9999999999999999999999999999999975 6899999999999886 789999999999995 99999999999
Q ss_pred hhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccC
Q 025563 179 DSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNG 226 (251)
Q Consensus 179 q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~ 226 (251)
|+..++|+||+|+|+||+++|++.++|+.+|++|||||||++|+++..
T Consensus 162 q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~ 209 (499)
T TIGR01124 162 QVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQ 209 (499)
T ss_pred hCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHH
Confidence 996679999999999999999999999999999999999999988753
No 42
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=1e-46 Score=344.19 Aligned_cols=212 Identities=24% Similarity=0.230 Sum_probs=192.3
Q ss_pred ccccchhhHHHHHH---HhhcccCCCcceecccccccCCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeE
Q 025563 5 ASMEDNHHKRAIKK---DATQLIGNTPMVYLNNVVDGCVA-RIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSV 80 (251)
Q Consensus 5 ~~~~~~~~~~~~~~---~v~~~~~~TPl~~~~~l~~~~g~-~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~ 80 (251)
..|+++.+.+++.. .++..+|+|||+++++|++.+|. +||+|+|++|||||||||++.+++..+.+.|. + +
T Consensus 55 ~~~~ry~~~lp~~~~~~~vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~----~-~ 129 (394)
T PRK08197 55 ANLWRYHELLPVRDPEHIVSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV----K-H 129 (394)
T ss_pred cchhcchhhCCCCCCCCCCccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC----C-E
Confidence 45677776666633 38889999999999999988884 99999999999999999999999999998885 3 4
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFE 160 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 160 (251)
||++|+||||+|+|++|+++|++|+||||.++++.|+++++.+||+|+.+++ +++++.+.+++.+++. ++|+++++.
T Consensus 130 vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~~~~~~~~ 206 (394)
T PRK08197 130 LAMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLVDG--LISDAGKIVAEAVAEY-GWFDVSTLK 206 (394)
T ss_pred EEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CcccccCCC
Confidence 9999999999999999999999999999999999999999999999999997 5788888898888876 799999999
Q ss_pred CCchHHHHHhhHHHHHhhhhCC-CCCEEEEecCchhHHHHHHHHHHhh-------CCCcEEEEEeCCCCcccc
Q 025563 161 NPANPKIHYETTGPEIWKDSGG-DVDILVAGIGTGGTVTGSGRFLKEK-------NPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 161 n~~~~~~g~~t~~~EI~~q~~~-~~d~vv~~vGtGg~~~Gi~~~~~~~-------~~~~~vigVep~~s~~~~ 225 (251)
||.+++ |+.|+++||++|++. .||+||+|+|+|++++|++++|++. ++.+||++|||++|+++.
T Consensus 207 np~~ie-G~~t~a~Ei~eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~ 278 (394)
T PRK08197 207 EPYRIE-GKKTMGLELAEQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIV 278 (394)
T ss_pred Cccchh-cHHHHHHHHHHHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHH
Confidence 999997 999999999999975 4999999999999999999999987 378999999999998764
No 43
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=2.1e-46 Score=344.34 Aligned_cols=213 Identities=18% Similarity=0.202 Sum_probs=193.5
Q ss_pred ccccchhhHHHHHH--HhhcccCCCcceecccccccCCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEE
Q 025563 5 ASMEDNHHKRAIKK--DATQLIGNTPMVYLNNVVDGCVA-RIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVL 81 (251)
Q Consensus 5 ~~~~~~~~~~~~~~--~v~~~~~~TPl~~~~~l~~~~g~-~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~v 81 (251)
.+++++.+.+++.. ++++.+|+|||+++++|++.+|. +||+|+|++|||||||||++.+++..|.+.|. + .|
T Consensus 66 ~~~wry~~~lp~~~~~~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~----~-~v 140 (421)
T PRK07591 66 KSIWRYRDLLPVPADNPVDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF----T-TV 140 (421)
T ss_pred cchhcchhhCccccCCCCcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC----C-EE
Confidence 45677777766632 48889999999999999988885 99999999999999999999999999999885 3 38
Q ss_pred EEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCC
Q 025563 82 IETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFEN 161 (251)
Q Consensus 82 v~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n 161 (251)
+++|+||||+|+|++|+++|++|+||||++++..|+.+++.+||+|+.+++ +++++.+.++++++++++++|++++.|
T Consensus 141 v~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g--~~d~a~~~a~~~~~~~~~~~~~n~~~~ 218 (421)
T PRK07591 141 ACASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDG--NYDDVNRLCSELANEHEGWGFVNINLR 218 (421)
T ss_pred EEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCEEEecCCCC
Confidence 999999999999999999999999999999999999999999999999997 588999999999888768899999889
Q ss_pred CchHHHHHhhHHHHHhhhhCCC-CCEEEEecCchhHHHHHHHHHHhh-------CCCcEEEEEeCCCCcccc
Q 025563 162 PANPKIHYETTGPEIWKDSGGD-VDILVAGIGTGGTVTGSGRFLKEK-------NPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 162 ~~~~~~g~~t~~~EI~~q~~~~-~d~vv~~vGtGg~~~Gi~~~~~~~-------~~~~~vigVep~~s~~~~ 225 (251)
|..++ |+.|+++||++|++.. ||+||+|+|+||+++|++++|++. ++.+||++|||++|+++.
T Consensus 219 p~~ie-G~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~ 289 (421)
T PRK07591 219 PYYAE-GSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIA 289 (421)
T ss_pred ccccc-chHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHH
Confidence 99986 9999999999999654 999999999999999999999997 578999999999987765
No 44
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=3.6e-46 Score=349.19 Aligned_cols=200 Identities=27% Similarity=0.377 Sum_probs=185.4
Q ss_pred HHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHH
Q 025563 18 KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIA 97 (251)
Q Consensus 18 ~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 97 (251)
.++...+.+|||+++++|++.+|.+||+|+|++||+||||+|+|.+++..+.+... ...||++|+||||+++|++|
T Consensus 12 ~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~aa 87 (504)
T PRK09224 12 ARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALSA 87 (504)
T ss_pred HHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHHH
Confidence 38889999999999999999899999999999999999999999999988653321 22499999999999999999
Q ss_pred HHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHh
Q 025563 98 ALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIW 177 (251)
Q Consensus 98 ~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~ 177 (251)
+++|++|+||||+.++..|++.++.+||+|+.++. +|+++.+.+.+++++. +.+|++||+|+.+++ |+.|++.||+
T Consensus 88 ~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~--~~~~a~~~a~~l~~~~-g~~~v~~f~~~~~i~-G~gTi~~EI~ 163 (504)
T PRK09224 88 ARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD--SFDEAYAHAIELAEEE-GLTFIHPFDDPDVIA-GQGTIAMEIL 163 (504)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcHHHH-hHHHHHHHHH
Confidence 99999999999999999999999999999999985 6899999999998885 889999999999995 9999999999
Q ss_pred hhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 178 KDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 178 ~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
+|++..+|+||+|+|+||+++|++.++|..+|++||+||||++|+++.
T Consensus 164 ~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~ 211 (504)
T PRK09224 164 QQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLK 211 (504)
T ss_pred HhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHH
Confidence 999655999999999999999999999999999999999999999875
No 45
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=5.5e-46 Score=330.92 Aligned_cols=195 Identities=23% Similarity=0.314 Sum_probs=179.1
Q ss_pred cccCCCcceecccccccCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHC
Q 025563 22 QLIGNTPMVYLNNVVDGCV-ARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALR 100 (251)
Q Consensus 22 ~~~~~TPl~~~~~l~~~~g-~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~ 100 (251)
..+++|||+++++|++.+| .+||+|+|++||+||||+|++.+++.++.++|. + +||++|+||||+|+|++|+.+
T Consensus 11 ~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~----~-~lv~aSsGN~g~alA~~aa~~ 85 (319)
T PRK06381 11 KPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY----S-GITVGTCGNYGASIAYFARLY 85 (319)
T ss_pred ccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC----C-EEEEeCCcHHHHHHHHHHHHc
Confidence 4699999999999998888 599999999999999999999999999999885 3 499999999999999999999
Q ss_pred CCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCC-CC-chHHHHHhhHHHHHhh
Q 025563 101 GYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFE-NP-ANPKIHYETTGPEIWK 178 (251)
Q Consensus 101 G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-n~-~~~~~g~~t~~~EI~~ 178 (251)
|++|+||||...+..|+++++.+||+|+.+++ +++++.+.+++++++. ++|++++++ |+ .+++ ||.++++||++
T Consensus 86 G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~~-G~~t~a~Ei~~ 161 (319)
T PRK06381 86 GLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--KYEEAVERSRKFAKEN-GIYDANPGSVNSVVDIE-AYSAIAYEIYE 161 (319)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--CHHHHHHHHHHHHHHc-CcEecCCCCCCcchHhh-hHHHHHHHHHH
Confidence 99999999999999999999999999999997 4788989999988875 788888886 76 4675 99999999999
Q ss_pred hhCCCCCEEEEecCchhHHHHHHHHHHhh------CCCcEEEEEeCCCCcccc
Q 025563 179 DSGGDVDILVAGIGTGGTVTGSGRFLKEK------NPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 179 q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~------~~~~~vigVep~~s~~~~ 225 (251)
|++..||+||+|+|+||+++|++++|++. .|.+||++|||.+++++.
T Consensus 162 ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~ 214 (319)
T PRK06381 162 ALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIV 214 (319)
T ss_pred HhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHH
Confidence 99767999999999999999999999998 789999999999987653
No 46
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-46 Score=329.24 Aligned_cols=208 Identities=22% Similarity=0.251 Sum_probs=195.0
Q ss_pred hhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChH
Q 025563 10 NHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNT 89 (251)
Q Consensus 10 ~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~ 89 (251)
+.++...+.+++..+..|||.+.-.|++.+|.++|+|+|++||+||||.|++.+++...-++++ ..+|+++|+|||
T Consensus 50 ~~~~~~~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNh 125 (457)
T KOG1250|consen 50 FYDISSAHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNH 125 (457)
T ss_pred cchhhhhhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccH
Confidence 5677888889999999999999989999999999999999999999999999999998766654 234999999999
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHH
Q 025563 90 GIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHY 169 (251)
Q Consensus 90 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~ 169 (251)
|.|+|++|+++|+|++||||..++.-|++.++.+||+|+..+. +++++...|.++++++ ++.|+++||+|+.++ |+
T Consensus 126 a~a~Ayaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~--~~deAk~~a~~lAke~-gl~yI~pfDhP~I~a-Gq 201 (457)
T KOG1250|consen 126 AQAAAYAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGE--DWDEAKAFAKRLAKEN-GLTYIPPFDHPDIWA-GQ 201 (457)
T ss_pred HHHHHHHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEecc--cHHHHHHHHHHHHHhc-CceecCCCCCchhhc-Cc
Confidence 9999999999999999999999999999999999999999987 6899999999999998 999999999999995 99
Q ss_pred hhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 170 ETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 170 ~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
+|++.||.+|++..+++|+||||+||+++||+.++++..|+++|||||+++|.++.
T Consensus 202 gTig~EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~ 257 (457)
T KOG1250|consen 202 GTIGLEILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFN 257 (457)
T ss_pred chHHHHHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHH
Confidence 99999999999766669999999999999999999999999999999999999876
No 47
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=9.5e-46 Score=333.16 Aligned_cols=214 Identities=25% Similarity=0.308 Sum_probs=188.0
Q ss_pred cccccchhhHHHHH---HHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeE
Q 025563 4 EASMEDNHHKRAIK---KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSV 80 (251)
Q Consensus 4 ~~~~~~~~~~~~~~---~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~ 80 (251)
+..|+++.+.+++. .++++.+|+|||++++++++..|.+||+|+|++||+||||+|++.+++.++.++|. . +
T Consensus 3 ~~~~~ry~~~lp~~~~~~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~----~-~ 77 (352)
T PRK06721 3 KGLLNQYASYLPVNENTPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS----E-A 77 (352)
T ss_pred cchHHHHHHhCCCCCCCCccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC----C-E
Confidence 45677777777763 35788999999999999988888899999999999999999999999999998884 3 4
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQF 159 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 159 (251)
||++|+||||+|+|++|+++|++|+||||+.. ++.|+++++.+||+|+.+++ +++++.+.+++++++. ++++++ +
T Consensus 78 vV~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~ 153 (352)
T PRK06721 78 IICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFDDALKAVRNIAAEE-PITLVN-S 153 (352)
T ss_pred EEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhC-Cceecc-C
Confidence 99999999999999999999999999999874 78899999999999999986 6888999999998886 667665 5
Q ss_pred CCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHH----HHHHhhC-CCcEEEEEeCCCCccccCC
Q 025563 160 ENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSG----RFLKEKN-PNIKVYGVEPTESAMLNGG 227 (251)
Q Consensus 160 ~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~----~~~~~~~-~~~~vigVep~~s~~~~~~ 227 (251)
.|+.+++ ||.++++||++|++..||+||+|+|+||+++|++ +++|+.+ |++||++|||++|+++..+
T Consensus 154 ~n~~~~~-G~~t~~~Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g 225 (352)
T PRK06721 154 VNPYRIE-GQKTAAFEICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKG 225 (352)
T ss_pred CCchhhh-hhhhHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhC
Confidence 6899886 9999999999999767999999999999999854 4555554 8899999999999887654
No 48
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=8.3e-46 Score=333.90 Aligned_cols=215 Identities=24% Similarity=0.272 Sum_probs=188.8
Q ss_pred ccccchhhHHHHH---HHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEE
Q 025563 5 ASMEDNHHKRAIK---KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVL 81 (251)
Q Consensus 5 ~~~~~~~~~~~~~---~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~v 81 (251)
..++++.+.+++. .+++..+|+|||+++++|++..|.+||+|+|++||+||||||++.+++..+.++|. . +|
T Consensus 7 ~~~~~~~~~lp~~~~~~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~----~-~i 81 (353)
T PRK07409 7 GLIEAYRDRLPVTDDTPVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA----K-AV 81 (353)
T ss_pred cchHHHHHhCCCCCccCcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC----C-EE
Confidence 3445555665543 24788999999999999988888899999999999999999999999999998875 3 49
Q ss_pred EEeccChHHHHHHHHHHHCCCcEEEEecCC-CcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCC
Q 025563 82 IETTGGNTGIGLAFIAALRGYKLIIVMPSI-ASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFE 160 (251)
Q Consensus 82 v~~ssGN~g~alA~~a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 160 (251)
|++|+||||+|+|++|+.+|++|+||||+. .+..|+++++.+||+|+.+++ +++++.+.++++++++ +++++++ .
T Consensus 82 v~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~l~~~~-~~~~~~~-~ 157 (353)
T PRK07409 82 ICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--NFDDALEIVRELAEKY-PVTLVNS-V 157 (353)
T ss_pred EEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CceecCC-C
Confidence 999999999999999999999999999997 588999999999999999997 5889999999998877 4777775 5
Q ss_pred CCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCC------CcEEEEEeCCCCccccCCCC
Q 025563 161 NPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNP------NIKVYGVEPTESAMLNGGQP 229 (251)
Q Consensus 161 n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~------~~~vigVep~~s~~~~~~~~ 229 (251)
|+.+++ ||.++++||++|+.+.||+||+|+|+||+++|++.+|++..+ .+||++|||++++++..+.+
T Consensus 158 n~~~~~-g~~t~~~EI~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~ 231 (353)
T PRK07409 158 NPYRIE-GQKTAAFEIVDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEP 231 (353)
T ss_pred Cchhhh-hHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCc
Confidence 999985 999999999999976799999999999999999999998743 49999999999988765543
No 49
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=9.8e-46 Score=342.20 Aligned_cols=209 Identities=17% Similarity=0.167 Sum_probs=188.9
Q ss_pred ccccchhhHHHHHH-HhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEE
Q 025563 5 ASMEDNHHKRAIKK-DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIE 83 (251)
Q Consensus 5 ~~~~~~~~~~~~~~-~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~ 83 (251)
++|+++.+.+++.. .++..+|+|||++++ +++.+|.+||+|+|++|||||||||++.+++.+|++.|. . .|++
T Consensus 44 ~~~wry~~~lp~~~~~v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~----~-~vv~ 117 (442)
T PRK05638 44 PGVWRYKELLPQVKKIISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAA----N-GFIV 117 (442)
T ss_pred CChhhhhhhCCCcCCccccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCC----C-EEEE
Confidence 56777777776643 378899999999984 666678899999999999999999999999999998864 3 4999
Q ss_pred eccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCc
Q 025563 84 TTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPA 163 (251)
Q Consensus 84 ~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~ 163 (251)
+|+||||+|+|++|+++|++|+||||.++++.|+++++.+||+|+.+++ +++++.+.+++++++. ++|++++++||.
T Consensus 118 aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-~~~~~~~~~np~ 194 (442)
T PRK05638 118 ASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--SVDEAIEYAEELARLN-GLYNVTPEYNII 194 (442)
T ss_pred eCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--CHHHHHHHHHHHHHhC-CeEecCCCCChh
Confidence 9999999999999999999999999999999999999999999999986 6899999999988875 899999999999
Q ss_pred hHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCC------CcEEEEEeCCCCcccc
Q 025563 164 NPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNP------NIKVYGVEPTESAMLN 225 (251)
Q Consensus 164 ~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~------~~~vigVep~~s~~~~ 225 (251)
+++ ||.|+++||++|++ ||+||+|+|+||+++|++++|++..+ .+||++|||++|+++.
T Consensus 195 ~~e-G~~t~a~Ei~eq~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~ 259 (442)
T PRK05638 195 GLE-GQKTIAFELWEEIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIA 259 (442)
T ss_pred Hhh-hHHHHHHHHHHHHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHH
Confidence 997 99999999999995 99999999999999999999999765 3799999999998764
No 50
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=8.4e-46 Score=338.50 Aligned_cols=211 Identities=24% Similarity=0.230 Sum_probs=191.5
Q ss_pred ccccchhhHHHH-HHHhhcccCCCcceecccccccCCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEE
Q 025563 5 ASMEDNHHKRAI-KKDATQLIGNTPMVYLNNVVDGCVA-RIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLI 82 (251)
Q Consensus 5 ~~~~~~~~~~~~-~~~v~~~~~~TPl~~~~~l~~~~g~-~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv 82 (251)
.+|+++.+.+++ ...+++.+|+|||+++++|++.+|. +||+|+|++|||||||||++.+++..+.++|. + +||
T Consensus 45 ~~~wry~~~lp~~~~~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~----~-~vv 119 (397)
T PRK06260 45 RGVWRYKELLPVKKKIVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV----K-TVA 119 (397)
T ss_pred cceeeehhhcCCCCCcccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC----C-EEE
Confidence 567887777777 4468899999999999999988887 99999999999999999999999999999885 3 499
Q ss_pred EeccChHHHHHHHHHHHCCCcEEEEecCC-CcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCC
Q 025563 83 ETTGGNTGIGLAFIAALRGYKLIIVMPSI-ASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFEN 161 (251)
Q Consensus 83 ~~ssGN~g~alA~~a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n 161 (251)
++|+||||+|+|++|+++|++|+||||++ .+..|+.+++.+||+|+.+++ +++++.+.+++++++. ++|+++++ |
T Consensus 120 ~aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-g~y~~~~~-n 195 (397)
T PRK06260 120 CASTGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--NFDDALDMVVELAKEG-KIYLLNSI-N 195 (397)
T ss_pred EeCCcHHHHHHHHHHHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--cHHHHHHHHHHHHhhC-CEEeecCC-C
Confidence 99999999999999999999999999997 789999999999999999987 5889999999998876 78889887 8
Q ss_pred CchHHHHHhhHHHHHhhhhCC-CCCEEEEecCchhHHHHHHHHHHhhC------CCcEEEEEeCCCCcccc
Q 025563 162 PANPKIHYETTGPEIWKDSGG-DVDILVAGIGTGGTVTGSGRFLKEKN------PNIKVYGVEPTESAMLN 225 (251)
Q Consensus 162 ~~~~~~g~~t~~~EI~~q~~~-~~d~vv~~vGtGg~~~Gi~~~~~~~~------~~~~vigVep~~s~~~~ 225 (251)
+.+++ ||.|+++||++|++. .||+||+|+|+||+++|++++|++.. +.+||++|||++|+++.
T Consensus 196 p~~~~-G~~t~a~Ei~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~ 265 (397)
T PRK06260 196 PFRLE-GQKTIGFEIADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIV 265 (397)
T ss_pred chhhc-chhhHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHH
Confidence 99996 999999999999976 69999999999999999999999875 33899999999998763
No 51
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=1.5e-45 Score=328.67 Aligned_cols=198 Identities=26% Similarity=0.274 Sum_probs=182.3
Q ss_pred HHhhcccCCCcceecccccccCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHH
Q 025563 18 KDATQLIGNTPMVYLNNVVDGCV-ARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFI 96 (251)
Q Consensus 18 ~~v~~~~~~TPl~~~~~l~~~~g-~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 96 (251)
+++...+++|||+++++|++..| .+||+|+|++||+||||+|++.+++.++.++|. . +||++|+||||+|+|++
T Consensus 14 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~----~-~vv~~SsGN~g~alA~~ 88 (324)
T cd01563 14 DIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV----K-AVACASTGNTSASLAAY 88 (324)
T ss_pred CcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCC----C-EEEEeCCCHHHHHHHHH
Confidence 46888999999999999988776 699999999999999999999999999998873 3 49999999999999999
Q ss_pred HHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHH
Q 025563 97 AALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEI 176 (251)
Q Consensus 97 a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI 176 (251)
|+.+|++|++|||+++++.++++++.+||+|+.++. +++++.+.+++++++. .+|++|++|+.+++ ||.+++.||
T Consensus 89 a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~--~~~~~~~~n~~~~~-g~~t~~~Ei 163 (324)
T cd01563 89 AARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFDDALRLVRELAEEN--WIYLSNSLNPYRLE-GQKTIAFEI 163 (324)
T ss_pred HHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cHHHHHHHHHHHHHhc--CeeccCCCCcceec-chhhhHHHH
Confidence 999999999999999999999999999999999987 5788999999998875 78999999999996 999999999
Q ss_pred hhhhCC-CCCEEEEecCchhHHHHHHHHHHhhC------CCcEEEEEeCCCCcccc
Q 025563 177 WKDSGG-DVDILVAGIGTGGTVTGSGRFLKEKN------PNIKVYGVEPTESAMLN 225 (251)
Q Consensus 177 ~~q~~~-~~d~vv~~vGtGg~~~Gi~~~~~~~~------~~~~vigVep~~s~~~~ 225 (251)
++|+.. .+|+||+|+|+||+++|++.+|++.. +++||+||||++++++.
T Consensus 164 ~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~ 219 (324)
T cd01563 164 AEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIV 219 (324)
T ss_pred HHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHH
Confidence 999963 69999999999999999999999875 57999999999987664
No 52
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=2e-45 Score=330.45 Aligned_cols=223 Identities=20% Similarity=0.175 Sum_probs=194.2
Q ss_pred ccccchhhHHHHHH--HhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEE
Q 025563 5 ASMEDNHHKRAIKK--DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLI 82 (251)
Q Consensus 5 ~~~~~~~~~~~~~~--~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv 82 (251)
.+|+++.+.+++.+ .++...|.|||+++. .+||+|+|++|||||||||++.+++..+.+.|. + +||
T Consensus 41 ~~~wry~~~lP~~~~~~~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~----~-~vv 108 (347)
T PRK08329 41 LDMRRYIDYLPVDEEFLPHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI----N-EVV 108 (347)
T ss_pred cchhhhHHhCCCCCCCCCcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC----C-EEE
Confidence 45677666666543 268889999999873 489999999999999999999999999999885 3 499
Q ss_pred EeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCC
Q 025563 83 ETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENP 162 (251)
Q Consensus 83 ~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~ 162 (251)
++|+||||+|+|++|+++|++|+||||+++++.|+.+++.+||+|+.+++ +++++.+.+++++++. +.+|++++.||
T Consensus 109 ~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~a~~l~~~~-~~~~~~~~~np 185 (347)
T PRK08329 109 IDSSGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAELHFVEG--DRMEVHEEAVKFSKRN-NIPYVSHWLNP 185 (347)
T ss_pred EECCCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeccCCCCc
Confidence 99999999999999999999999999999999999999999999999987 4677888888888875 77889999999
Q ss_pred chHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhC------CCcEEEEEeCCCCccccC-CCCCceeec
Q 025563 163 ANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKN------PNIKVYGVEPTESAMLNG-GQPGRLLFF 235 (251)
Q Consensus 163 ~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~------~~~~vigVep~~s~~~~~-~~~~~~~i~ 235 (251)
.+++ ||.|+++||++|++ .||+||+|+|+|++++|++++|++.. +.+||++|||++|.++.. ....++..+
T Consensus 186 ~~~e-G~~t~~~Ei~eql~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~~~~~t~a~ 263 (347)
T PRK08329 186 YFLE-GTKTIAYEIYEQIG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRSKSENKLAD 263 (347)
T ss_pred hhhc-cchhHHHHHHHHcC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhccCCCCceee
Confidence 9997 99999999999995 79999999999999999999999873 568999999999887753 334567788
Q ss_pred ccCCccccc
Q 025563 236 LFFLFFFCF 244 (251)
Q Consensus 236 g~g~~~~~~ 244 (251)
||+.+..|.
T Consensus 264 gi~i~~~~~ 272 (347)
T PRK08329 264 GIAIPEPPR 272 (347)
T ss_pred eEEeCCCCC
Confidence 888765543
No 53
>PLN02569 threonine synthase
Probab=100.00 E-value=6.3e-45 Score=337.84 Aligned_cols=230 Identities=14% Similarity=0.084 Sum_probs=196.9
Q ss_pred cccchhh-HHHHH---HHhhcccCCCcceeccccccc-CCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCe
Q 025563 6 SMEDNHH-KRAIK---KDATQLIGNTPMVYLNNVVDG-CVA-RIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKS 79 (251)
Q Consensus 6 ~~~~~~~-~~~~~---~~v~~~~~~TPl~~~~~l~~~-~g~-~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~ 79 (251)
.|+++.+ .+++. ..++..+|+|||+++++|++. +|. +||+|+|++|||||||||++..++..+.+.|.......
T Consensus 109 g~wry~~~~lP~~~~~~~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~ 188 (484)
T PLN02569 109 GVWSKKEWVLPEIDDDDIVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVV 188 (484)
T ss_pred CccccccccCCCCCcccceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCcc
Confidence 4566665 44442 238889999999999999887 785 99999999999999999999999999988765322123
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCC-CcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCC
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSI-ASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQ 158 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 158 (251)
.|+++|+||||.|+|++|+++|++|+||||++ .+..|+.+++.+||+|+.+++ +|+++++.++++++++ ++|++++
T Consensus 189 ~Vv~ASSGN~GaAlAayaa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~a~~~a~e~~~~~-~~~~~n~ 265 (484)
T PLN02569 189 GVGCASTGDTSAALSAYCAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--DFDGCMRLIREVTAEL-PIYLANS 265 (484)
T ss_pred EEEEeCCcHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEecCC
Confidence 49999999999999999999999999999996 788999999999999999997 6999999999988876 6889998
Q ss_pred CCCCchHHHHHhhHHHHHhhhhCCC-CCEEEEecCchhHHHHHHHHHHhhC------CCcEEEEEeCCCCccccC----C
Q 025563 159 FENPANPKIHYETTGPEIWKDSGGD-VDILVAGIGTGGTVTGSGRFLKEKN------PNIKVYGVEPTESAMLNG----G 227 (251)
Q Consensus 159 ~~n~~~~~~g~~t~~~EI~~q~~~~-~d~vv~~vGtGg~~~Gi~~~~~~~~------~~~~vigVep~~s~~~~~----~ 227 (251)
+ |+.+++ ||.|+++||++|++.. ||+||+|+|+||+++|++++|++.. +.+||++|||++|+++.. +
T Consensus 266 ~-Np~~ie-G~kT~a~EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G 343 (484)
T PLN02569 266 L-NSLRLE-GQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYKSG 343 (484)
T ss_pred C-CcchhH-hHHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHHcC
Confidence 8 999997 9999999999999754 9999999999999999999999863 458999999999987752 2
Q ss_pred C-------CCceeecccCCc
Q 025563 228 Q-------PGRLLFFLFFLF 240 (251)
Q Consensus 228 ~-------~~~~~i~g~g~~ 240 (251)
. ..++..+||+.+
T Consensus 344 ~~~~~~~~~~~T~A~gi~i~ 363 (484)
T PLN02569 344 WEEFKPVKANPTFASAIQIG 363 (484)
T ss_pred CCccccCCCCCccchhhccC
Confidence 1 245667777766
No 54
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=7.3e-45 Score=331.88 Aligned_cols=213 Identities=21% Similarity=0.199 Sum_probs=186.3
Q ss_pred chhhHHHHHHHh--hcccCCCcceecccccccCC-ceEEEEeCCC-CCCCchhhHHHHHHHHHHHH--cCCC--------
Q 025563 9 DNHHKRAIKKDA--TQLIGNTPMVYLNNVVDGCV-ARIAAKLEMM-EPCCSVKDRIALSMIKDAEE--KGLI-------- 74 (251)
Q Consensus 9 ~~~~~~~~~~~v--~~~~~~TPl~~~~~l~~~~g-~~i~~K~E~~-~ptGS~K~R~a~~~l~~a~~--~g~~-------- 74 (251)
+++++..+.+++ ...+++|||+++++|++.+| .+||+|+|++ ||+||||+|++.+.+..+.. .+..
T Consensus 25 ~~~~~~~a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~ 104 (399)
T PRK08206 25 SQEEAKKARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEE 104 (399)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHH
Confidence 367889999999 66999999999999999899 5999999997 59999999999988877653 2210
Q ss_pred ---------CCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHH
Q 025563 75 ---------TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEE 145 (251)
Q Consensus 75 ---------~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~ 145 (251)
.++. +|+++|+||||+|+|++|+.+|++|+||||..+++.|+..++.+||+|+.+++ +++++.+.+.+
T Consensus 105 l~~~~~~~~~~~~-~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~--~~~~~~~~a~~ 181 (399)
T PRK08206 105 LTSGEVREKLGDI-TFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDG--NYDDSVRLAAQ 181 (399)
T ss_pred hhhhHHHHhccCC-EEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHH
Confidence 0122 39999999999999999999999999999999999999999999999999996 68899999999
Q ss_pred HhhcCCCeEecC-----CCCC-CchHHHHHhhHHHHHhhhhCC---CCCEEEEecCchhHHHHHHHHHHhhC--CCcEEE
Q 025563 146 ILSNTPNGFMFR-----QFEN-PANPKIHYETTGPEIWKDSGG---DVDILVAGIGTGGTVTGSGRFLKEKN--PNIKVY 214 (251)
Q Consensus 146 ~~~~~~~~~~~~-----~~~n-~~~~~~g~~t~~~EI~~q~~~---~~d~vv~~vGtGg~~~Gi~~~~~~~~--~~~~vi 214 (251)
++++. +++|++ +|+| +.++.+||.|+++||++|+.+ .||+||+|+|+||+++|++.+|++.+ +.+||+
T Consensus 182 ~~~~~-g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii 260 (399)
T PRK08206 182 EAQEN-GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFV 260 (399)
T ss_pred HHHHc-CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEE
Confidence 88876 788886 6765 555557999999999999965 59999999999999999999999884 479999
Q ss_pred EEeCCCCcccc
Q 025563 215 GVEPTESAMLN 225 (251)
Q Consensus 215 gVep~~s~~~~ 225 (251)
+|||++|+++.
T Consensus 261 ~Vep~gs~~l~ 271 (399)
T PRK08206 261 VVEPDQADCLY 271 (399)
T ss_pred EECCCCCchHH
Confidence 99999998874
No 55
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=2e-44 Score=322.26 Aligned_cols=186 Identities=24% Similarity=0.255 Sum_probs=167.5
Q ss_pred HhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHH
Q 025563 19 DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAA 98 (251)
Q Consensus 19 ~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 98 (251)
.++..+|+|||++.+ +||+|+|++|||||||||++.+++..+.+.|. + .|+++|+||+|.|+|++|+
T Consensus 51 ~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~----~-~vv~aSsGN~g~slA~~aa 117 (338)
T PRK06450 51 FISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI----K-QISEDSSGNAGASIAAYGA 117 (338)
T ss_pred CCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC----C-EEEEECCcHHHHHHHHHHH
Confidence 488899999999864 69999999999999999999999999998874 2 4999999999999999999
Q ss_pred HCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhh
Q 025563 99 LRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWK 178 (251)
Q Consensus 99 ~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~ 178 (251)
++|++|+||||+++++.|+++++.+||+|+.+++ +++++.+. +++. +.+|++++.||.+++ ||+|+++||++
T Consensus 118 ~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~--~~~~~~~~----a~~~-g~~~~~~~~np~~ie-G~kTia~EI~e 189 (338)
T PRK06450 118 AAGIEVKIFVPETASGGKLKQIESYGAEVVRVRG--SREDVAKA----AENS-GYYYASHVLQPQFRD-GIRTLAYEIAK 189 (338)
T ss_pred HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHH----HHhc-CeEeccCCCCccHHH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999997 46665443 4444 778999999999997 99999999999
Q ss_pred hhCC-CCCEEEEecCchhHHHHHHHHHHhhCC------CcEEEEEeCCCCcccc
Q 025563 179 DSGG-DVDILVAGIGTGGTVTGSGRFLKEKNP------NIKVYGVEPTESAMLN 225 (251)
Q Consensus 179 q~~~-~~d~vv~~vGtGg~~~Gi~~~~~~~~~------~~~vigVep~~s~~~~ 225 (251)
|++. .||+||+|+|+|++++|++++|++..+ .+||++|||++|+++.
T Consensus 190 ql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~ 243 (338)
T PRK06450 190 DLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLC 243 (338)
T ss_pred HcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHH
Confidence 9963 599999999999999999999999764 3899999999998765
No 56
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=2.1e-43 Score=302.96 Aligned_cols=187 Identities=45% Similarity=0.626 Sum_probs=175.5
Q ss_pred CcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEE
Q 025563 27 TPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLII 106 (251)
Q Consensus 27 TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~i 106 (251)
|||++++++++..+.+||+|+|+.||+||||+|++.+++..+.+.|.+ ++.. ||++|+||||.|+|++|+++|++|++
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~~~-vv~~ssGN~g~alA~~a~~~g~~~~v 78 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PKGV-IIESTGGNTGIALAAAAARLGLKCTI 78 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CCCE-EEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 899999999887788999999999999999999999999999998865 3344 99999999999999999999999999
Q ss_pred EecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhCC-CCC
Q 025563 107 VMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGG-DVD 185 (251)
Q Consensus 107 vvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~-~~d 185 (251)
|+|...++.++++++.+||+|+.+++. ++++.+.+++++++.++++|+++|+|+.+++ ||.++++||.+|++. .||
T Consensus 79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~-g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 79 VMPEGASPEKVAQMRALGAEVVLVPGD--FDDAIALAKELAEEDPGAYYVNQFDNPANIA-GQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhCCCCEecCCCCCHHHHH-HHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999974 8899999999999856899999999999997 899999999999976 599
Q ss_pred EEEEecCchhHHHHHHHHHHhhCCCcEEEEEeC
Q 025563 186 ILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEP 218 (251)
Q Consensus 186 ~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep 218 (251)
+||+|+|+||+++|++.+|++.+|++||++|||
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 999999999999999999999999999999999
No 57
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-44 Score=297.74 Aligned_cols=208 Identities=22% Similarity=0.324 Sum_probs=192.9
Q ss_pred cccchhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEec
Q 025563 6 SMEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETT 85 (251)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s 85 (251)
...+++++..+++|+...+..||++.++.+-+..|.++|+|.|++|.+|+||.|+|.+.+..+.+... ...+++.|
T Consensus 5 ~~~t~~dv~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~----~kgvithS 80 (323)
T KOG1251|consen 5 YKITYEDVRAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR----AKGVITHS 80 (323)
T ss_pred ecCCHHHHHHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh----cCceEeec
Confidence 34578999999999999999999999999999999999999999999999999999999988763332 12399999
Q ss_pred cChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchH
Q 025563 86 GGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANP 165 (251)
Q Consensus 86 sGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~ 165 (251)
|||||.|+|++|+..|+|++|+||++.+..|+..++.||++|+++++. .+++...++++.++. +.+.++||++|..+
T Consensus 81 SGNHaqAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~Py~~p~vI 157 (323)
T KOG1251|consen 81 SGNHAQALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIHPYNHPSVI 157 (323)
T ss_pred CCcHHHHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeCCCCCccee
Confidence 999999999999999999999999999999999999999999999984 467888999999998 89999999999999
Q ss_pred HHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCc
Q 025563 166 KIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESA 222 (251)
Q Consensus 166 ~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~ 222 (251)
+|+.|++.|+++|+ +.+|++|+|+|+||+++|++.+.+...|+++|++|||++++
T Consensus 158 -aGqgTiA~ElleqV-g~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~ 212 (323)
T KOG1251|consen 158 -AGQGTIALELLEQV-GEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAAD 212 (323)
T ss_pred -eccchHHHHHHHhh-CccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccc
Confidence 59999999999999 58999999999999999999999999999999999999876
No 58
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=1.1e-42 Score=318.73 Aligned_cols=237 Identities=21% Similarity=0.202 Sum_probs=187.7
Q ss_pred ccccchhhHHHHHHHhhcccCCCcceecccccccCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEE
Q 025563 5 ASMEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCV--ARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLI 82 (251)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g--~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv 82 (251)
.|.++..+|......++..+++|||+++++|++.+| .+||+|+|++||+||||+|++..++..+.++|. ...++
T Consensus 56 ~~~~~~~~i~~~v~~~~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~----~~~vt 131 (427)
T PRK12391 56 VSTERYIDIPEEVREIYRLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI----KRLTT 131 (427)
T ss_pred CCcccccCChHHHHHHHcccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC----CEEEE
Confidence 344455566666666778889999999999998877 699999999999999999999999999999986 23244
Q ss_pred EeccChHHHHHHHHHHHCCCcEEEEecCC---CcHHHHHHHHHcCCEEEEeCCCCC----------------hHHHHHHH
Q 025563 83 ETTGGNTGIGLAFIAALRGYKLIIVMPSI---ASMERRIVLRALGAEVYLADQAGG----------------FEGILRKG 143 (251)
Q Consensus 83 ~~ssGN~g~alA~~a~~~G~~~~ivvp~~---~~~~~~~~~~~~Ga~v~~v~~~~~----------------~~~~~~~a 143 (251)
++|+||||.|+|++|+.+|++|+||||+. .++.|+.+|+.+||+|+.++...+ ...++..+
T Consensus 132 etgsGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A 211 (427)
T PRK12391 132 ETGAGQWGSALALACALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEA 211 (427)
T ss_pred ccCchHHHHHHHHHHHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHH
Confidence 56789999999999999999999999974 366889999999999999986311 11245666
Q ss_pred HHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhC---CCCCEEEEecCchhHHHHHHHHHHh---hC-CCcEEEEE
Q 025563 144 EEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSG---GDVDILVAGIGTGGTVTGSGRFLKE---KN-PNIKVYGV 216 (251)
Q Consensus 144 ~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~---~~~d~vv~~vGtGg~~~Gi~~~~~~---~~-~~~~vigV 216 (251)
.+.+++.++.+|+..+... +...||.++++||.+|++ ..||+||+|+|+||+++|++.+|.+ .+ +++||++|
T Consensus 212 ~e~a~~~~~~~y~~~s~~~-~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaV 290 (427)
T PRK12391 212 VEDAAKRPDTKYALGSVLN-HVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAV 290 (427)
T ss_pred HHHHHhCCCcEEEcCCCCc-HHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 6666655465555444333 344699999999999996 3699999999999999999997743 24 88999999
Q ss_pred eCCCCccccCCCC--------C---ceeecccCCccccccc
Q 025563 217 EPTESAMLNGGQP--------G---RLLFFLFFLFFFCFFF 246 (251)
Q Consensus 217 ep~~s~~~~~~~~--------~---~~~i~g~g~~~~~~~~ 246 (251)
||++|++++.+.. + ...+.++|..|+|..+
T Consensus 291 Ep~~~~~l~~g~~~~~~gd~~~~~p~~~~~~lG~~~~p~~~ 331 (427)
T PRK12391 291 EPAACPTLTKGEYAYDFGDTAGLTPLLKMYTLGHDFVPPPI 331 (427)
T ss_pred eeccchhhccccccccccccccCCccceeEecCCCCCCccc
Confidence 9999998875411 1 2568899999988653
No 59
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=1.4e-42 Score=317.49 Aligned_cols=234 Identities=21% Similarity=0.212 Sum_probs=184.9
Q ss_pred cccccchhhHHHHHHHhhccc-CCCcceecccccccCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeE
Q 025563 4 EASMEDNHHKRAIKKDATQLI-GNTPMVYLNNVVDGCV--ARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSV 80 (251)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~~~~-~~TPl~~~~~l~~~~g--~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~ 80 (251)
|.|.++..+|..........+ ++|||+++++|++.+| ++||+|+|++||+||||+|++..++..+.++|. ...
T Consensus 45 e~~~~r~~~~~~~v~~~~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~----~~~ 120 (419)
T TIGR01415 45 EVSGERWIKIPGEVLKRYAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA----KRL 120 (419)
T ss_pred cccHhhHHhhHHHHHHHHHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC----CeE
Confidence 344455666664333334445 5899999999998877 699999999999999999999999999999985 232
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCC---cHHHHHHHHHcCCEEEEeCCCCChHH------------------H
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIA---SMERRIVLRALGAEVYLADQAGGFEG------------------I 139 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~v~~~~~~~~------------------~ 139 (251)
++++|+||||.|+|++|+.+|++|+||||+.. ++.|+.+|+.+||+|+.++.. +++ +
T Consensus 121 vtetssGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~--~~~~~r~~~~~~p~~~gsl~~a 198 (419)
T TIGR01415 121 VTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE--FTEFGREVLKEDPDHPGSLGIA 198 (419)
T ss_pred EEecCchHHHHHHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc--hhhHHHHhhhcccccccchHHH
Confidence 44578899999999999999999999999843 568899999999999999874 322 2
Q ss_pred HHHHHHHhhcCC-CeEecCCCCCCchHHHHHhhHHHHHhhhhCC---CCCEEEEecCchhHHHHHHHHHHhh----CCCc
Q 025563 140 LRKGEEILSNTP-NGFMFRQFENPANPKIHYETTGPEIWKDSGG---DVDILVAGIGTGGTVTGSGRFLKEK----NPNI 211 (251)
Q Consensus 140 ~~~a~~~~~~~~-~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~---~~d~vv~~vGtGg~~~Gi~~~~~~~----~~~~ 211 (251)
+..+.+.+++++ ..|+.+++.|+ ...||.++|+||++|++. .||+||+|+|+||+++|++.+|.+. .+++
T Consensus 199 i~~a~e~a~~~~~~~y~~~~~~n~--~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~ 276 (419)
T TIGR01415 199 ISEAIEYALSDEDTKYSLGSVLNH--VLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDR 276 (419)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCcH--HHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCC
Confidence 455666665544 34566665553 335999999999999964 4999999999999999999988433 3579
Q ss_pred EEEEEeCCCCccccCCCC-----------CceeecccCCcccccc
Q 025563 212 KVYGVEPTESAMLNGGQP-----------GRLLFFLFFLFFFCFF 245 (251)
Q Consensus 212 ~vigVep~~s~~~~~~~~-----------~~~~i~g~g~~~~~~~ 245 (251)
||++|||++|++++.+.. ..+.+.++|..++|..
T Consensus 277 rviaVep~~~~~l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~ 321 (419)
T TIGR01415 277 RFIAAEPKACPTLTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPP 321 (419)
T ss_pred EEEEEeeCCChhhhcCcccccccccccCCcceeeeecCCCCCCcc
Confidence 999999999998876531 1356789999998864
No 60
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-43 Score=294.88 Aligned_cols=225 Identities=39% Similarity=0.579 Sum_probs=195.4
Q ss_pred HhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHH
Q 025563 19 DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAA 98 (251)
Q Consensus 19 ~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 98 (251)
-+...+|+|||+++..|++..||+|+.|.|.+||.||.|||.|.++++.|+++|++.+|.. |++.|+||+|.++|..|.
T Consensus 42 Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg~-v~EGtaGsTgIslA~v~~ 120 (391)
T KOG1481|consen 42 GVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGGT-VVEGTAGSTGISLAHVAR 120 (391)
T ss_pred hhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCce-EEecCCCccchhHHHhhh
Confidence 4667899999999999999999999999999999999999999999999999999999976 999999999999999999
Q ss_pred HCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCC--ChHHHHHHHHHHhhcCC------CeEecCCCCCCchHHHHHh
Q 025563 99 LRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG--GFEGILRKGEEILSNTP------NGFMFRQFENPANPKIHYE 170 (251)
Q Consensus 99 ~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~--~~~~~~~~a~~~~~~~~------~~~~~~~~~n~~~~~~g~~ 170 (251)
.+|++|+|+||.+.+.+|.+.++.+||+|++|++.. +-+.-...|++.+++.+ ..+|.+||+|++|+.+||.
T Consensus 121 a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHye 200 (391)
T KOG1481|consen 121 ALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYE 200 (391)
T ss_pred hcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhc
Confidence 999999999999999999999999999999997642 22233333433333332 2477899999999999999
Q ss_pred hHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCC-cEEEEEeCCCCccccC-------------C----CCCce
Q 025563 171 TTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPN-IKVYGVEPTESAMLNG-------------G----QPGRL 232 (251)
Q Consensus 171 t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~-~~vigVep~~s~~~~~-------------~----~~~~~ 232 (251)
++|+||+.|.++++|++++.+|||||++|+++++++..+. +.++..+|-||-.++. | .+...
T Consensus 201 tTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dt 280 (391)
T KOG1481|consen 201 TTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDT 280 (391)
T ss_pred CcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcch
Confidence 9999999999999999999999999999999999999876 9999999999954331 1 23466
Q ss_pred eecccCCccccc
Q 025563 233 LFFLFFLFFFCF 244 (251)
Q Consensus 233 ~i~g~g~~~~~~ 244 (251)
..||||.+.+-.
T Consensus 281 i~EGIGinRiT~ 292 (391)
T KOG1481|consen 281 ITEGIGINRITG 292 (391)
T ss_pred hhhccccccccc
Confidence 788999876643
No 61
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=4.7e-42 Score=310.74 Aligned_cols=211 Identities=20% Similarity=0.209 Sum_probs=182.0
Q ss_pred hhhHHHHHHHhhcccCCCcceecccccccCCc-eEEEEeCCCCC-CCchhhHHHHHHHHHHHHc----------------
Q 025563 10 NHHKRAIKKDATQLIGNTPMVYLNNVVDGCVA-RIAAKLEMMEP-CCSVKDRIALSMIKDAEEK---------------- 71 (251)
Q Consensus 10 ~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~-~i~~K~E~~~p-tGS~K~R~a~~~l~~a~~~---------------- 71 (251)
++.+..+++++... .+|||++++.|++.+|. +||+|+|++|+ +||||+|++.+.+..+.+.
T Consensus 7 ~~~~~~~~~~~~~~-~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~ 85 (376)
T TIGR01747 7 AKLALAFHKKIPGY-RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKN 85 (376)
T ss_pred HHHHHHHHHhCCCC-CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhh
Confidence 56677888888766 99999999999999994 99999999985 8999999999999887553
Q ss_pred CCCC--CCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhc
Q 025563 72 GLIT--PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 72 g~~~--~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~ 149 (251)
+.+. .+..+||++|+||||+|+|++|+.+|++|+||||+++++.|+..++.+||+|+.+++ +++++.+.+++++++
T Consensus 86 ~~~~~~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~ 163 (376)
T TIGR01747 86 DAIGEKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM--NYDDTVRLAMQMAQQ 163 (376)
T ss_pred hHHHhhcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHh
Confidence 1111 123459999999999999999999999999999999999999999999999999986 689999999998887
Q ss_pred CCCeEecC-----CCCC--CchHHHHHhhHHHHHhhhhCC----CCCEEEEecCchhHHHHHHHHHHhhC-CC-cEEEEE
Q 025563 150 TPNGFMFR-----QFEN--PANPKIHYETTGPEIWKDSGG----DVDILVAGIGTGGTVTGSGRFLKEKN-PN-IKVYGV 216 (251)
Q Consensus 150 ~~~~~~~~-----~~~n--~~~~~~g~~t~~~EI~~q~~~----~~d~vv~~vGtGg~~~Gi~~~~~~~~-~~-~~vigV 216 (251)
. ++++++ +|+| +..+ .||.|+++||++|+.. .||+||+|+|+||+++|++.++++.. ++ +||++|
T Consensus 164 ~-g~~~~~~~~~~~~~~~~~~ii-~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~V 241 (376)
T TIGR01747 164 H-GWVVVQDTAWEGYEKIPTWIM-QGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVV 241 (376)
T ss_pred c-CcEEeccccccccccCCchHH-HHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 6 678876 4655 5555 5999999999999952 69999999999999999999998764 33 799999
Q ss_pred eCCCCcccc
Q 025563 217 EPTESAMLN 225 (251)
Q Consensus 217 ep~~s~~~~ 225 (251)
||++|+++.
T Consensus 242 ep~ga~~~~ 250 (376)
T TIGR01747 242 EPDKADCLY 250 (376)
T ss_pred eeCCCCHHH
Confidence 999999875
No 62
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=3e-42 Score=313.86 Aligned_cols=212 Identities=20% Similarity=0.182 Sum_probs=178.3
Q ss_pred hhhHHHHHHHhhcccCCCcceecccccccCC-ceEEEEeCCCC-CCCchhhHHHHHHHHHHHH--cCCC-----------
Q 025563 10 NHHKRAIKKDATQLIGNTPMVYLNNVVDGCV-ARIAAKLEMME-PCCSVKDRIALSMIKDAEE--KGLI----------- 74 (251)
Q Consensus 10 ~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g-~~i~~K~E~~~-ptGS~K~R~a~~~l~~a~~--~g~~----------- 74 (251)
..++..++.++. .+.+|||++++.|++.+| .+||+|+|++| |+||||+|++.+.+..+.+ .|..
T Consensus 26 ~~~~~~~~~~~~-~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~ 104 (396)
T TIGR03528 26 AEKVRAFHQSFP-GYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKS 104 (396)
T ss_pred HHHHHHHHhcCC-CCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhh
Confidence 456666677764 559999999999999999 59999999988 4999999999999987533 2210
Q ss_pred ---C--CCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhc
Q 025563 75 ---T--PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 75 ---~--~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~ 149 (251)
. ....+||++|+||||+|+|++|+++|++|+||||+++++.|++.++.+||+|+.+++ +++++.+.+++++++
T Consensus 105 ~~~~~~~~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~ 182 (396)
T TIGR03528 105 NEIREKLGDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDL--NYDDAVRLAWKMAQE 182 (396)
T ss_pred HHHHhhccCcEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHh
Confidence 0 012259999999999999999999999999999999999999999999999999986 688999999999887
Q ss_pred CCCeEecC-----CCCC--CchHHHHHhhHHHHHhhhhC----CCCCEEEEecCchhHHHHHHHHHHhh-CCC-cEEEEE
Q 025563 150 TPNGFMFR-----QFEN--PANPKIHYETTGPEIWKDSG----GDVDILVAGIGTGGTVTGSGRFLKEK-NPN-IKVYGV 216 (251)
Q Consensus 150 ~~~~~~~~-----~~~n--~~~~~~g~~t~~~EI~~q~~----~~~d~vv~~vGtGg~~~Gi~~~~~~~-~~~-~~vigV 216 (251)
+ +++|++ +|+| +..+ .||.|+++||++|++ +.||+||+|+|+||+++|++.++++. .++ +||++|
T Consensus 183 ~-g~~~v~~~~~~~~~~~~~~~i-~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~V 260 (396)
T TIGR03528 183 N-GWVMVQDTAWEGYEKIPTWIM-QGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIV 260 (396)
T ss_pred c-CcEeeccccccccccCchHHH-HHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEE
Confidence 6 788885 5765 3334 599999999999996 36999999999999999999999654 444 599999
Q ss_pred eCCCCccccC
Q 025563 217 EPTESAMLNG 226 (251)
Q Consensus 217 ep~~s~~~~~ 226 (251)
||++|+++..
T Consensus 261 ep~~a~~l~~ 270 (396)
T TIGR03528 261 EPDAADCLYR 270 (396)
T ss_pred ccCCCchHHH
Confidence 9999998863
No 63
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.6e-41 Score=308.36 Aligned_cols=223 Identities=22% Similarity=0.224 Sum_probs=178.1
Q ss_pred CccccccchhhHHHHHHH--------------hhcccC-CCcceecccccccC-CceEEEEeCCCCCCCchhhHHHHHHH
Q 025563 2 VLEASMEDNHHKRAIKKD--------------ATQLIG-NTPMVYLNNVVDGC-VARIAAKLEMMEPCCSVKDRIALSMI 65 (251)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--------------v~~~~~-~TPl~~~~~l~~~~-g~~i~~K~E~~~ptGS~K~R~a~~~l 65 (251)
++|..|+.+++....+.. +..+++ +|||+++++|++.+ |++||+|+|++||+||||+|.+...+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~ 102 (402)
T PRK13028 23 VPPELKPALDELEAAYEEIKKDPDFIAELRYLLKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQA 102 (402)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHH
Confidence 345555555555544443 335565 79999999999988 57999999999999999999999999
Q ss_pred HHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcH---HHHHHHHHcCCEEEEeCC-CCChHHHHH
Q 025563 66 KDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASM---ERRIVLRALGAEVYLADQ-AGGFEGILR 141 (251)
Q Consensus 66 ~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~---~~~~~~~~~Ga~v~~v~~-~~~~~~~~~ 141 (251)
..+.+.|+ +..|+++|+||||+|+|++|+++|++|+||||+...+ .|+.+|+.+||+|+.|+. ..+++++.+
T Consensus 103 l~A~~~G~----~~vI~etgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~ 178 (402)
T PRK13028 103 LLAKRMGK----KRLIAETGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVD 178 (402)
T ss_pred HHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHH
Confidence 99988885 3336679999999999999999999999999986433 568899999999999984 346888888
Q ss_pred HHHH-HhhcCCCeEecC-CC----CCCchHHHHHhhHHHHHhhhhC----CCCCEEEEecCchhHHHHHHHHHHhhCCCc
Q 025563 142 KGEE-ILSNTPNGFMFR-QF----ENPANPKIHYETTGPEIWKDSG----GDVDILVAGIGTGGTVTGSGRFLKEKNPNI 211 (251)
Q Consensus 142 ~a~~-~~~~~~~~~~~~-~~----~n~~~~~~g~~t~~~EI~~q~~----~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~ 211 (251)
.+.+ +.++.++.+|+. +. ..|.++..||.+++.||.+|+. ..||+||+|+|+||+++|++.+|++ .+++
T Consensus 179 ~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v 257 (402)
T PRK13028 179 SAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESV 257 (402)
T ss_pred HHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCc
Confidence 8744 565544566663 21 2244555699999999999973 3699999999999999999999986 4889
Q ss_pred EEEEEeCCC--------CccccCCCC
Q 025563 212 KVYGVEPTE--------SAMLNGGQP 229 (251)
Q Consensus 212 ~vigVep~~--------s~~~~~~~~ 229 (251)
|||||||.+ |+++..+.+
T Consensus 258 ~iigVE~~G~~~~~~~~aa~l~~g~~ 283 (402)
T PRK13028 258 RLVGVEPAGRGLDLGEHAATLTLGKP 283 (402)
T ss_pred eEEEEecCCCCcccccccccccCCCc
Confidence 999999999 777765544
No 64
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.3e-41 Score=322.98 Aligned_cols=229 Identities=20% Similarity=0.227 Sum_probs=183.8
Q ss_pred CccccccchhhHHHHHHH--------------hhcccC-CCcceeccccccc----CC--ceEEEEeCCCCCCCchhhHH
Q 025563 2 VLEASMEDNHHKRAIKKD--------------ATQLIG-NTPMVYLNNVVDG----CV--ARIAAKLEMMEPCCSVKDRI 60 (251)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--------------v~~~~~-~TPl~~~~~l~~~----~g--~~i~~K~E~~~ptGS~K~R~ 60 (251)
++|..|+.+++...++.+ +..++| +|||+++++|++. +| .+||+|+|++|||||||+|.
T Consensus 287 ~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~ 366 (695)
T PRK13802 287 VPEALITALDELERVYTQAKADPEFHKELATLNQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINN 366 (695)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHH
Confidence 345555555555544443 446788 9999999998753 44 69999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCC---CcHHHHHHHHHcCCEEEEeCCC-CCh
Q 025563 61 ALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSI---ASMERRIVLRALGAEVYLADQA-GGF 136 (251)
Q Consensus 61 a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~---~~~~~~~~~~~~Ga~v~~v~~~-~~~ 136 (251)
+..++..+.+.|+ ...++++|+||||+|+|++|+++|++|+||||.. .+..|+.+|+.+||+|+.++.. .++
T Consensus 367 Al~~i~~A~~~G~----~~~IvetssGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l 442 (695)
T PRK13802 367 ALGQALLVKRMGK----TRVIAETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRIL 442 (695)
T ss_pred HHHHHHHHHHcCC----CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcH
Confidence 9999999999986 2348899999999999999999999999999985 3678999999999999999843 367
Q ss_pred HHHHHHH-HHHhhcCC-CeEecCCCCCC----chHHHHHhhHHHHHhhhhCC-----CCCEEEEecCchhHHHHHHHHHH
Q 025563 137 EGILRKG-EEILSNTP-NGFMFRQFENP----ANPKIHYETTGPEIWKDSGG-----DVDILVAGIGTGGTVTGSGRFLK 205 (251)
Q Consensus 137 ~~~~~~a-~~~~~~~~-~~~~~~~~~n~----~~~~~g~~t~~~EI~~q~~~-----~~d~vv~~vGtGg~~~Gi~~~~~ 205 (251)
+++.+.+ +++.++.+ ..|+++++.|+ .++..||.++|.||++|+.. .||+||+|+|+||+++|++.+|+
T Consensus 443 ~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~ 522 (695)
T PRK13802 443 KDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFL 522 (695)
T ss_pred HHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHH
Confidence 7776555 55666543 44678887654 34557999999999999852 69999999999999999999997
Q ss_pred hhCCCcEEEEEeCCCCccccCCCCCceee---cccCC
Q 025563 206 EKNPNIKVYGVEPTESAMLNGGQPGRLLF---FLFFL 239 (251)
Q Consensus 206 ~~~~~~~vigVep~~s~~~~~~~~~~~~i---~g~g~ 239 (251)
+ .+++||+||||.++. ..++.|.+ +|+|.
T Consensus 523 ~-~~~vkligVE~~g~g----~~~g~h~~~~~~g~g~ 554 (695)
T PRK13802 523 D-DERVNLYGYEAGGNG----PESGKHAIRFAPGTGE 554 (695)
T ss_pred h-CCCceEEEEEecCCC----ccccchhhhhhhccCC
Confidence 6 688999999999974 33444444 56665
No 65
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=3.1e-41 Score=306.06 Aligned_cols=215 Identities=20% Similarity=0.229 Sum_probs=171.4
Q ss_pred CccccccchhhHHHHHHH--------------hhcccC-CCcceecccccccC-CceEEEEeCCCCCCCchhhHHHHHHH
Q 025563 2 VLEASMEDNHHKRAIKKD--------------ATQLIG-NTPMVYLNNVVDGC-VARIAAKLEMMEPCCSVKDRIALSMI 65 (251)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--------------v~~~~~-~TPl~~~~~l~~~~-g~~i~~K~E~~~ptGS~K~R~a~~~l 65 (251)
++|..|+.+++...++.+ +.+++| +|||+++++|++.+ |.+||+|+|++|||||||+|.+...+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~ 98 (397)
T PRK04346 19 VPETLMPALEELEEAYEKAKNDPEFQAELDYLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQA 98 (397)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHH
Confidence 345555555555544443 345676 59999999999988 57999999999999999999999999
Q ss_pred HHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-c--HHHHHHHHHcCCEEEEeCC-CCChHHHHH
Q 025563 66 KDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-S--MERRIVLRALGAEVYLADQ-AGGFEGILR 141 (251)
Q Consensus 66 ~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~--~~~~~~~~~~Ga~v~~v~~-~~~~~~~~~ 141 (251)
..|.+.|+ +..|+++|+||||.|+|++|+++|++|+||||... + ..|+.+|+.+||+|+.|+. ..+++++.+
T Consensus 99 l~A~~~Gk----~~vIaetgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ 174 (397)
T PRK04346 99 LLAKRMGK----KRIIAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVN 174 (397)
T ss_pred HHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHH
Confidence 99988885 33466789999999999999999999999999853 3 3578889999999999984 346776666
Q ss_pred HHHH-HhhcCCCeEec-CCCCC----CchHHHHHhhHHHHHhhhhC----CCCCEEEEecCchhHHHHHHHHHHhhCCCc
Q 025563 142 KGEE-ILSNTPNGFMF-RQFEN----PANPKIHYETTGPEIWKDSG----GDVDILVAGIGTGGTVTGSGRFLKEKNPNI 211 (251)
Q Consensus 142 ~a~~-~~~~~~~~~~~-~~~~n----~~~~~~g~~t~~~EI~~q~~----~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~ 211 (251)
.+.+ +.++.++.+|+ .+..+ |.++..||.+++.||.+|+. ..||+||+|+|+||+++|++.+|++ .|++
T Consensus 175 ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v 253 (397)
T PRK04346 175 EALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESV 253 (397)
T ss_pred HHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCC
Confidence 5544 55553355554 33222 34555699999999999974 3699999999999999999999976 8889
Q ss_pred EEEEEeCCCC
Q 025563 212 KVYGVEPTES 221 (251)
Q Consensus 212 ~vigVep~~s 221 (251)
|||||||.++
T Consensus 254 ~iigVE~~G~ 263 (397)
T PRK04346 254 RLIGVEAAGK 263 (397)
T ss_pred eEEEEecCCC
Confidence 9999999986
No 66
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=5.1e-42 Score=306.49 Aligned_cols=196 Identities=21% Similarity=0.195 Sum_probs=174.4
Q ss_pred HhhcccCCCcceecccccccCCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHH
Q 025563 19 DATQLIGNTPMVYLNNVVDGCVA-RIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIA 97 (251)
Q Consensus 19 ~v~~~~~~TPl~~~~~l~~~~g~-~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 97 (251)
.+...+++|||++++++++.+|. +||+|+|++|||||||||++.+++..+.++|. . +||++|+||||+|+|++|
T Consensus 16 ~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~----~-~vv~aSsGN~g~a~A~~a 90 (328)
T TIGR00260 16 LVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGN----D-TVLCASTGNTGAAAAAYA 90 (328)
T ss_pred hhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCC----C-EEEEeCCcHHHHHHHHHh
Confidence 57778899999999999888887 99999999999999999999999999988874 2 499999999999999999
Q ss_pred HHCCCcEEEEecCC-CcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCC--CchHHHHHhhHHH
Q 025563 98 ALRGYKLIIVMPSI-ASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFEN--PANPKIHYETTGP 174 (251)
Q Consensus 98 ~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n--~~~~~~g~~t~~~ 174 (251)
+.+|++|+||||+. .++.|++.++.+||+|+.+++ +++++.+.+++++++. +.+++++ .| +.+++ ||.++++
T Consensus 91 ~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~~-~n~~~~~~~-g~~t~~~ 165 (328)
T TIGR00260 91 GKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDDAQRLVKQLFGDK-EALGLNS-VNSIPYRLE-GQKTYAF 165 (328)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHHHHHHHHHHHhhc-Ceeeccc-CCCCCeEee-eehhHHH
Confidence 99999999999998 899999999999999999997 6889999999988875 4555554 45 88885 9999999
Q ss_pred HHhhhhCC-CCCEEEEecCchhHHHHHHHHHHhhCC-----CcEEEEEeCCCCccc
Q 025563 175 EIWKDSGG-DVDILVAGIGTGGTVTGSGRFLKEKNP-----NIKVYGVEPTESAML 224 (251)
Q Consensus 175 EI~~q~~~-~~d~vv~~vGtGg~~~Gi~~~~~~~~~-----~~~vigVep~~s~~~ 224 (251)
||++|++. .+|+||+|+|+||+++|++.+|++... .+++++|||++|+++
T Consensus 166 Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~~~ 221 (328)
T TIGR00260 166 EAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADI 221 (328)
T ss_pred HHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCCChH
Confidence 99999974 799999999999999999999998511 249999999999544
No 67
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=7.4e-41 Score=304.16 Aligned_cols=198 Identities=21% Similarity=0.281 Sum_probs=161.6
Q ss_pred HhhcccC-CCcceecccccccC------CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHH
Q 025563 19 DATQLIG-NTPMVYLNNVVDGC------VARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGI 91 (251)
Q Consensus 19 ~v~~~~~-~TPl~~~~~l~~~~------g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~ 91 (251)
.+..++| +|||+++++|++.+ |++||+|+|++|||||||+|.+...+..|.+.|+ +..|+++|+||||.
T Consensus 58 ~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~----~~vIaesgaGNhG~ 133 (410)
T PLN02618 58 ILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK----KRIIAETGAGQHGV 133 (410)
T ss_pred HHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHH
Confidence 3667786 89999999999876 4799999999999999999999999888888774 33355677899999
Q ss_pred HHHHHHHHCCCcEEEEecCCC---cHHHHHHHHHcCCEEEEeCC-CCChHHHHH-HHHHHhhcCCCeEec-CCCC--C--
Q 025563 92 GLAFIAALRGYKLIIVMPSIA---SMERRIVLRALGAEVYLADQ-AGGFEGILR-KGEEILSNTPNGFMF-RQFE--N-- 161 (251)
Q Consensus 92 alA~~a~~~G~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~v~~-~~~~~~~~~-~a~~~~~~~~~~~~~-~~~~--n-- 161 (251)
|+|++|+++|++|+||||+.. +..|+.+|+.+||+|+.|+. ..+++++.. .+++++++.++.+|+ .+.. +
T Consensus 134 AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~ 213 (410)
T PLN02618 134 ATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY 213 (410)
T ss_pred HHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCC
Confidence 999999999999999999853 35677899999999999954 347888874 445677664455665 2211 1
Q ss_pred CchHHHHHhhHHHHHhhhh----CCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCC
Q 025563 162 PANPKIHYETTGPEIWKDS----GGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTES 221 (251)
Q Consensus 162 ~~~~~~g~~t~~~EI~~q~----~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s 221 (251)
+.....++.++|.||.+|+ +..||+||+|+|+||+++|++.+|+. .+++|||||||+++
T Consensus 214 ~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~ 276 (410)
T PLN02618 214 PMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGF 276 (410)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCC
Confidence 2233469999999998876 34699999999999999999999975 78999999999997
No 68
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=2.6e-40 Score=300.78 Aligned_cols=199 Identities=21% Similarity=0.230 Sum_probs=162.8
Q ss_pred HHhhcccC-CCcceecccccccCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHH
Q 025563 18 KDATQLIG-NTPMVYLNNVVDGCV-ARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAF 95 (251)
Q Consensus 18 ~~v~~~~~-~TPl~~~~~l~~~~g-~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 95 (251)
..+..+++ +|||+++++|++.+| .+||+|+|++|||||||+|.+..++..+.+.|. ...++++|+||||+|+|+
T Consensus 41 ~~~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA~ 116 (385)
T TIGR00263 41 ELLRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRIIAETGAGQHGVATAT 116 (385)
T ss_pred HHHHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHH
Confidence 33445554 899999999998887 799999999999999999999999999888774 233667999999999999
Q ss_pred HHHHCCCcEEEEecCC-CcH--HHHHHHHHcCCEEEEeCCC-CChHHHH-HHHHHHhhcCCCeEec-CCCCC----CchH
Q 025563 96 IAALRGYKLIIVMPSI-ASM--ERRIVLRALGAEVYLADQA-GGFEGIL-RKGEEILSNTPNGFMF-RQFEN----PANP 165 (251)
Q Consensus 96 ~a~~~G~~~~ivvp~~-~~~--~~~~~~~~~Ga~v~~v~~~-~~~~~~~-~~a~~~~~~~~~~~~~-~~~~n----~~~~ 165 (251)
+|+++|++|+||||+. .+. .++++++.+||+|+.++.. +.++++. +.+++++++.++.+|+ +++.| +.++
T Consensus 117 ~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~ 196 (385)
T TIGR00263 117 AAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMV 196 (385)
T ss_pred HHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHH
Confidence 9999999999999975 333 5788999999999999753 3566664 4445556654455665 44433 3555
Q ss_pred HHHHhhHHHHHhhhhC----CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCC
Q 025563 166 KIHYETTGPEIWKDSG----GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTES 221 (251)
Q Consensus 166 ~~g~~t~~~EI~~q~~----~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s 221 (251)
..||.|++.||++|+. ..||+||+|+|+||+++|++.+|.+ .|++|||||||+++
T Consensus 197 ~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs 255 (385)
T TIGR00263 197 RDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGL 255 (385)
T ss_pred HHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCC
Confidence 5799999999999973 2589999999999999999998865 68999999999996
No 69
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=2.8e-40 Score=293.28 Aligned_cols=193 Identities=21% Similarity=0.197 Sum_probs=163.6
Q ss_pred ccCCCcceecccccccCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEEEe--ccChHHHHHHHHHH
Q 025563 23 LIGNTPMVYLNNVVDGCVARIAAKLEMMEPC--CSVKDRIALSMIKDAEEKGLITPGKSVLIET--TGGNTGIGLAFIAA 98 (251)
Q Consensus 23 ~~~~TPl~~~~~l~~~~g~~i~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--ssGN~g~alA~~a~ 98 (251)
...+|||+++++|++..|.+||+|+|++||+ ||||+|++.+++.++.++|. + +||++ |+||||+|+|++|+
T Consensus 4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~----~-~vv~~g~ssGN~g~alA~~a~ 78 (311)
T TIGR01275 4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA----D-TVITVGAIQSNHARATALAAK 78 (311)
T ss_pred CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC----C-EEEEcCCchhHHHHHHHHHHH
Confidence 4578999999999888889999999999998 99999999999999999885 3 48888 55999999999999
Q ss_pred HCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhh----cCC-CeEecCCCCCCchHHHHHhhH
Q 025563 99 LRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQAGGFEGILRKGEEILS----NTP-NGFMFRQFENPANPKIHYETT 172 (251)
Q Consensus 99 ~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~----~~~-~~~~~~~~~n~~~~~~g~~t~ 172 (251)
++|++|++|||... +..+..+++.+||+|+.++.. +++++.+.+.++++ +.+ .+++.+++.|+.+.+ |+.++
T Consensus 79 ~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-g~~~~ 156 (311)
T TIGR01275 79 KLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGTL-GYVEA 156 (311)
T ss_pred HhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHHH-HHHHH
Confidence 99999999999865 456677789999999999863 34444444444432 322 345668889999986 77789
Q ss_pred HHHHhhhhCC--CCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCc
Q 025563 173 GPEIWKDSGG--DVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESA 222 (251)
Q Consensus 173 ~~EI~~q~~~--~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~ 222 (251)
++||++|++. +||+||+|+|||||++|++++|++.+|+++||||||+.+.
T Consensus 157 ~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~ 208 (311)
T TIGR01275 157 VLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFG 208 (311)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccH
Confidence 9999999964 7999999999999999999999999999999999988663
No 70
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=2.9e-40 Score=295.51 Aligned_cols=202 Identities=21% Similarity=0.190 Sum_probs=171.6
Q ss_pred HHhhcccCCCcceecccccccCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEEEec--cChHHHHH
Q 025563 18 KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPC--CSVKDRIALSMIKDAEEKGLITPGKSVLIETT--GGNTGIGL 93 (251)
Q Consensus 18 ~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s--sGN~g~al 93 (251)
.++...+++|||++++.|++..|.+||+|+|++||+ ||||+|++.+++.++.++|. . .||++| +||||+|+
T Consensus 7 ~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~----~-~vvt~g~s~gN~g~al 81 (331)
T PRK03910 7 PRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA----D-TLITAGAIQSNHARQT 81 (331)
T ss_pred CCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC----C-EEEEcCcchhHHHHHH
Confidence 457788999999999999888889999999999996 59999999999999998874 3 377775 38999999
Q ss_pred HHHHHHCCCcEEEEecCCCcH--------HHHHHHHHcCCEEEEeCCCCChHH-HHHHHHHHhhcCCCe-EecCCCCCCc
Q 025563 94 AFIAALRGYKLIIVMPSIASM--------ERRIVLRALGAEVYLADQAGGFEG-ILRKGEEILSNTPNG-FMFRQFENPA 163 (251)
Q Consensus 94 A~~a~~~G~~~~ivvp~~~~~--------~~~~~~~~~Ga~v~~v~~~~~~~~-~~~~a~~~~~~~~~~-~~~~~~~n~~ 163 (251)
|++|+.+|++|+||||...++ .++..++.+||+|+.++..++..+ +...++++.++.+.. ++..++.|+.
T Consensus 82 A~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 161 (331)
T PRK03910 82 AAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNAL 161 (331)
T ss_pred HHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCch
Confidence 999999999999999998765 466899999999999987533323 344566666654333 3456889999
Q ss_pred hHHHHHhhHHHHHhhhhCC---CCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 164 NPKIHYETTGPEIWKDSGG---DVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 164 ~~~~g~~t~~~EI~~q~~~---~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
+.+ ||.+++.||++|++. .||+||+|+||||+++|++++|++.+|+++||||||++++.+.
T Consensus 162 ~~~-g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~ 225 (331)
T PRK03910 162 GAL-GYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQ 225 (331)
T ss_pred hHH-HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHH
Confidence 986 889999999999963 6999999999999999999999999999999999999986653
No 71
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=5e-40 Score=290.10 Aligned_cols=210 Identities=36% Similarity=0.471 Sum_probs=173.3
Q ss_pred hhcccCCCcceecc--cccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHH
Q 025563 20 ATQLIGNTPMVYLN--NVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIA 97 (251)
Q Consensus 20 v~~~~~~TPl~~~~--~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 97 (251)
|+..+++|||++++ .+.+..+.+||+|+|++|||||||+|++.+++..+++++. . .|+++|+||||.|+|++|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~----~-~vv~assGN~g~a~A~~a 75 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGG----R-TVVGASSGNHGRALAYAA 75 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTT----S-EEEEESSSHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccc----c-eeeeeccCCceehhhhhh
Confidence 57889999999975 4555667899999999999999999999999999988864 3 489999999999999999
Q ss_pred HHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhc-------CCCeEecCCCCCCchHHHHHh
Q 025563 98 ALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSN-------TPNGFMFRQFENPANPKIHYE 170 (251)
Q Consensus 98 ~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~n~~~~~~g~~ 170 (251)
+++|++|++|+|+++++.++++++.+||+|+.++.. ++++.+.+.+++++ .++. ++|++|+... .||.
T Consensus 76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~g~~ 150 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGD--VEGAFDDAQELAKERAELLSPFNGE--LNQYNNPNVI-AGYA 150 (306)
T ss_dssp HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESST--HHHHHHHHHHHHHHHHHHHHHSTTE--ESTTTSHHHH-HHHH
T ss_pred hhccccceeeeccccccccccceeeecceEEEcccc--ccccccccccccccccccccccccc--cCcccchhhh-hhhh
Confidence 999999999999999999999999999999999863 44444444443332 2122 6777454444 6999
Q ss_pred hHHHHHhhhhCCCCCE--EEEecCchhHHHHHHHHHHh--hCCCcEEEEEeCCCCcccc----CCC----CCceeecccC
Q 025563 171 TTGPEIWKDSGGDVDI--LVAGIGTGGTVTGSGRFLKE--KNPNIKVYGVEPTESAMLN----GGQ----PGRLLFFLFF 238 (251)
Q Consensus 171 t~~~EI~~q~~~~~d~--vv~~vGtGg~~~Gi~~~~~~--~~~~~~vigVep~~s~~~~----~~~----~~~~~i~g~g 238 (251)
+++.||.+|++ .||. ||+|+|+||+++|++.+++. . |++||++|||.+++++. .+. +..+.+.||+
T Consensus 151 ~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~ 228 (306)
T PF00291_consen 151 TIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLG 228 (306)
T ss_dssp HHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGT
T ss_pred hcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeeeccc
Confidence 99999999997 6665 99999999999999999999 7 89999999999998775 233 2335677888
Q ss_pred Ccc
Q 025563 239 LFF 241 (251)
Q Consensus 239 ~~~ 241 (251)
.+.
T Consensus 229 ~~~ 231 (306)
T PF00291_consen 229 VPM 231 (306)
T ss_dssp SSS
T ss_pred CCc
Confidence 876
No 72
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=2.3e-39 Score=292.96 Aligned_cols=206 Identities=21% Similarity=0.230 Sum_probs=164.4
Q ss_pred HHHHHhhccc-CCCcceecccccccC-CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHH
Q 025563 15 AIKKDATQLI-GNTPMVYLNNVVDGC-VARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIG 92 (251)
Q Consensus 15 ~~~~~v~~~~-~~TPl~~~~~l~~~~-g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~a 92 (251)
.++....+++ .+|||++++++++.+ +.+||+|+|++||+||||+|.+..++..+.++|. ...++++|+||||+|
T Consensus 22 ~~~~~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~----~~vv~~~ssGN~g~a 97 (365)
T cd06446 22 ELRELYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRVIAETGAGQHGVA 97 (365)
T ss_pred HHHHHhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC----CeEEEecCchHHHHH
Confidence 3344444444 499999999998887 5799999999999999999999999999988885 232445789999999
Q ss_pred HHHHHHHCCCcEEEEecCCCc---HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHH-HhhcCCC-eEecCCC----CCC
Q 025563 93 LAFIAALRGYKLIIVMPSIAS---MERRIVLRALGAEVYLADQA-GGFEGILRKGEE-ILSNTPN-GFMFRQF----ENP 162 (251)
Q Consensus 93 lA~~a~~~G~~~~ivvp~~~~---~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~-~~~~~~~-~~~~~~~----~n~ 162 (251)
+|++|+++|++|+||+|+..+ +.++.+++.+||+|+.++.. .+++++...+.+ ..++.++ .|+++++ .++
T Consensus 98 lA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~ 177 (365)
T cd06446 98 TATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYP 177 (365)
T ss_pred HHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCch
Confidence 999999999999999998643 35788999999999999864 245666644433 3443223 4444332 223
Q ss_pred chHHHHHhhHHHHHhhhhC----CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 163 ANPKIHYETTGPEIWKDSG----GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 163 ~~~~~g~~t~~~EI~~q~~----~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
.++.+||.++++||++|+. ..||+||+|+|+||+++|+++++++ .+++|||||||++|+++.
T Consensus 178 ~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~ 243 (365)
T cd06446 178 NMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLET 243 (365)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCcccc
Confidence 4566799999999999985 3699999999999999999999887 468999999999998875
No 73
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=1.2e-39 Score=296.86 Aligned_cols=211 Identities=14% Similarity=0.070 Sum_probs=176.5
Q ss_pred ccccchhhHHHHHHHhhcccCCCcceecccccccCCc-eEEEE-------eCCCCCCCchhhHHHHHHHHHHHHcCCCCC
Q 025563 5 ASMEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVA-RIAAK-------LEMMEPCCSVKDRIALSMIKDAEEKGLITP 76 (251)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~-~i~~K-------~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~ 76 (251)
..|+++.+.+++.+. ....+.|||++.++|++.+|. ++|+| +|++|||||||||++.+++..+.+.|.
T Consensus 42 ~~~wry~~~lP~~~~-~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~--- 117 (398)
T TIGR03844 42 PGIFRYYDWLPVTGH-LRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG--- 117 (398)
T ss_pred CchhhhHhhCCCCCC-CCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC---
Confidence 356666666665433 446677999999999999998 99995 555899999999999999999998873
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEec
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMF 156 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~ 156 (251)
..||++|+||||.|+|++|+++|++|+||||++.+..+...++.+||+|+.+++ +|+++.+.++++++++ +++..
T Consensus 118 --~~Vv~aSsGN~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~a~~~a~~~a~~~-g~~~~ 192 (398)
T TIGR03844 118 --KTLVVASAGNTGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DYTDAIALADRIATLP-GFVPE 192 (398)
T ss_pred --CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CHHHHHHHHHHHHHhC-Ccccc
Confidence 349999999999999999999999999999998644333335789999999987 6899999999998876 66555
Q ss_pred CCCCCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhC-------CCcEEEEEeCCCCcccc
Q 025563 157 RQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKN-------PNIKVYGVEPTESAMLN 225 (251)
Q Consensus 157 ~~~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~-------~~~~vigVep~~s~~~~ 225 (251)
++++|+..++ |++|+++||++|++..||+||+|+|+|+.+.|++.++++.. ..+|+++|||++|+++.
T Consensus 193 ~~~~~p~~ie-G~~Ti~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~ 267 (398)
T TIGR03844 193 GGARNVARRD-GMGTVMLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMV 267 (398)
T ss_pred CCCCCHHHHh-hHHHHHHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHH
Confidence 6678898886 99999999999996459999999999988999999998741 34799999999998775
No 74
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=2.4e-39 Score=286.87 Aligned_cols=193 Identities=22% Similarity=0.213 Sum_probs=161.0
Q ss_pred CcceecccccccC--CceEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEEe--ccChHHHHHHHHHHH
Q 025563 27 TPMVYLNNVVDGC--VARIAAKLEMMEPC---CSVKDRIALSMIKDAEEKGLITPGKSVLIET--TGGNTGIGLAFIAAL 99 (251)
Q Consensus 27 TPl~~~~~l~~~~--g~~i~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--ssGN~g~alA~~a~~ 99 (251)
|||+++++|++.+ +.+||+|+|++||+ ||||+|++.+++.++.++|. . .||++ |+||||+|+|++|++
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~----~-~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA----D-TLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC----C-EEEECCCchhHHHHHHHHHHHH
Confidence 8999999998877 56999999999998 57799999999999998885 3 38887 579999999999999
Q ss_pred CCCcEEEEecCCCc--------HHHHHHHHHcCCEEEEeCCCCC--hHHHHHH-HHHHhhcCCCeEe-cCCC-CCCchHH
Q 025563 100 RGYKLIIVMPSIAS--------MERRIVLRALGAEVYLADQAGG--FEGILRK-GEEILSNTPNGFM-FRQF-ENPANPK 166 (251)
Q Consensus 100 ~G~~~~ivvp~~~~--------~~~~~~~~~~Ga~v~~v~~~~~--~~~~~~~-a~~~~~~~~~~~~-~~~~-~n~~~~~ 166 (251)
+|++|+||||...+ ..|+++++.+||+|+.++...+ ..++.+. ++++.++.+..|+ .+++ +|+.+.+
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGGL 155 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCcccHH
Confidence 99999999998876 4689999999999999987421 1222333 3334444323344 4555 4999996
Q ss_pred HHHhhHHHHHhhhhCC---CCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 167 IHYETTGPEIWKDSGG---DVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 167 ~g~~t~~~EI~~q~~~---~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
||.+++.||++|++. .||+||+|+||||+++|++++|++.++++||++|||++|+.+.
T Consensus 156 -G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~ 216 (307)
T cd06449 156 -GYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKT 216 (307)
T ss_pred -HHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHH
Confidence 999999999999864 6999999999999999999999999999999999999997664
No 75
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=4.9e-39 Score=288.21 Aligned_cols=203 Identities=19% Similarity=0.180 Sum_probs=167.9
Q ss_pred HHHhhcccCCCcceecccccccCCc--eEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEEe--ccChH
Q 025563 17 KKDATQLIGNTPMVYLNNVVDGCVA--RIAAKLEMMEPC---CSVKDRIALSMIKDAEEKGLITPGKSVLIET--TGGNT 89 (251)
Q Consensus 17 ~~~v~~~~~~TPl~~~~~l~~~~g~--~i~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--ssGN~ 89 (251)
.+++...+++|||++++++++.+|. +||+|+|++||+ ||||+|.+.+++.+++++|+ . +|+++ |+|||
T Consensus 5 ~~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~----~-~vvs~ggs~gN~ 79 (337)
T TIGR01274 5 FPRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC----T-TLVSIGGIQSNQ 79 (337)
T ss_pred CCccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC----C-EEEECCCCcchH
Confidence 3577888999999999999988874 999999999986 78899999999999999986 2 37776 66999
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCc--------HHHHHHHHHcCCEEEEeCCCC--ChHHHHHHHHHHhhcC-CCeEecCC
Q 025563 90 GIGLAFIAALRGYKLIIVMPSIAS--------MERRIVLRALGAEVYLADQAG--GFEGILRKGEEILSNT-PNGFMFRQ 158 (251)
Q Consensus 90 g~alA~~a~~~G~~~~ivvp~~~~--------~~~~~~~~~~Ga~v~~v~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~ 158 (251)
|+|+|++|+++|++|+||||+..+ ..|+.+++.+||+|+.++... +..++...+.+.+++. +..|+++.
T Consensus 80 g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~ 159 (337)
T TIGR01274 80 TRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPA 159 (337)
T ss_pred HHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCC
Confidence 999999999999999999998542 579999999999999998631 1234555555444444 23366655
Q ss_pred C--CCCchHHHHHhhHHHHHhhhh---CCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 159 F--ENPANPKIHYETTGPEIWKDS---GGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 159 ~--~n~~~~~~g~~t~~~EI~~q~---~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
+ .++.... |+.++++||.+|+ +.+||+||+|+||||+++|+++++++.++++|||||||++++.+.
T Consensus 160 ~~~~~~~~~~-G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~ 230 (337)
T TIGR01274 160 GCSDHPLGGL-GFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQT 230 (337)
T ss_pred CCCCCccchh-HHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHH
Confidence 4 2466664 8999999999995 347999999999999999999999999999999999999997663
No 76
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=5.7e-39 Score=287.83 Aligned_cols=203 Identities=19% Similarity=0.169 Sum_probs=167.6
Q ss_pred HHhhcccCCCcceecccccccCC--ceEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEEe--ccChHH
Q 025563 18 KDATQLIGNTPMVYLNNVVDGCV--ARIAAKLEMMEPC---CSVKDRIALSMIKDAEEKGLITPGKSVLIET--TGGNTG 90 (251)
Q Consensus 18 ~~v~~~~~~TPl~~~~~l~~~~g--~~i~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--ssGN~g 90 (251)
+++.+.+++|||++++++++.+| .+||+|+|++||+ ||+|+|.+.+++.++.++|. . +|+++ |+||||
T Consensus 7 ~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~----~-~vvs~G~s~GN~g 81 (337)
T PRK12390 7 PRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA----D-TLVSIGGVQSNHT 81 (337)
T ss_pred CccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC----C-EEEEeCCCccHHH
Confidence 46778899999999999988777 6999999999987 78899999999999999986 3 37877 779999
Q ss_pred HHHHHHHHHCCCcEEEEecCCCc--------HHHHHHHHHcCCEEEEeCCCC--ChHHHHHHHHHHhhcCCCeEe-cCCC
Q 025563 91 IGLAFIAALRGYKLIIVMPSIAS--------MERRIVLRALGAEVYLADQAG--GFEGILRKGEEILSNTPNGFM-FRQF 159 (251)
Q Consensus 91 ~alA~~a~~~G~~~~ivvp~~~~--------~~~~~~~~~~Ga~v~~v~~~~--~~~~~~~~a~~~~~~~~~~~~-~~~~ 159 (251)
+|+|++|+++|++|++|++..++ ..|+.+++.+||+|+.++... .++++.+.+.+..++..+..| ++.+
T Consensus 82 ~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (337)
T PRK12390 82 RQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPAG 161 (337)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCCc
Confidence 99999999999999999876544 237778999999999998731 234666666666665334444 5554
Q ss_pred CC--CchHHHHHhhHHHHHhhh---hCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccC
Q 025563 160 EN--PANPKIHYETTGPEIWKD---SGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNG 226 (251)
Q Consensus 160 ~n--~~~~~~g~~t~~~EI~~q---~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~ 226 (251)
.+ +... .||.++++||++| ++.++|+||+|+|||||++|++.+|++..|++|||||||++++.+..
T Consensus 162 ~~~~~~~~-~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~ 232 (337)
T PRK12390 162 ASDHPLGG-LGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTR 232 (337)
T ss_pred CCCCCccc-HHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHH
Confidence 33 4444 4899999999998 44479999999999999999999999999999999999999977653
No 77
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.1e-38 Score=304.40 Aligned_cols=196 Identities=22% Similarity=0.237 Sum_probs=161.7
Q ss_pred hcccC-CCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHH
Q 025563 21 TQLIG-NTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAAL 99 (251)
Q Consensus 21 ~~~~~-~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~ 99 (251)
..+++ +|||+++++|++.+|.+||+|+|++|||||||+|.+...+..+.+.|+ +..++++|+||||+|+|++|++
T Consensus 265 ~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~aa~ 340 (610)
T PRK13803 265 QNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATACAL 340 (610)
T ss_pred HHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHHHHH
Confidence 34555 899999999998889999999999999999999999999998888774 3336678999999999999999
Q ss_pred CCCcEEEEecCCC---cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHH-HHHhhcCCCeEecCCCC-----CCchHHHHH
Q 025563 100 RGYKLIIVMPSIA---SMERRIVLRALGAEVYLADQA-GGFEGILRKG-EEILSNTPNGFMFRQFE-----NPANPKIHY 169 (251)
Q Consensus 100 ~G~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a-~~~~~~~~~~~~~~~~~-----n~~~~~~g~ 169 (251)
+|++|+||||... +..++.+|+.+||+|+.++.. .+++++.+.+ +++.++.++.+|+.++. .+.++..||
T Consensus 341 ~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~ 420 (610)
T PRK13803 341 FGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQ 420 (610)
T ss_pred cCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHh
Confidence 9999999999764 356888999999999999853 3566765544 44434445666764331 244554589
Q ss_pred hhHHHHHhhhhC----CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCC
Q 025563 170 ETTGPEIWKDSG----GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTES 221 (251)
Q Consensus 170 ~t~~~EI~~q~~----~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s 221 (251)
.+++.||.+|+. ..||+||+|+|+||+++|++.+|++ .+++||+||||.++
T Consensus 421 ~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~ 475 (610)
T PRK13803 421 SVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGK 475 (610)
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCC
Confidence 999999999984 2599999999999999999999964 78999999999986
No 78
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=1.2e-38 Score=284.85 Aligned_cols=199 Identities=18% Similarity=0.195 Sum_probs=167.3
Q ss_pred HHHHhhcccCCCcceecccccccCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEE--EeccChHHH
Q 025563 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPC--CSVKDRIALSMIKDAEEKGLITPGKSVLI--ETTGGNTGI 91 (251)
Q Consensus 16 ~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~g~~~vv--~~ssGN~g~ 91 (251)
.++++.+..++|||++++++++..|++||+|+|++||+ ||||+|++.+++.++.++|+ ++ || ++|+||||+
T Consensus 11 ~~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~----~~-vv~~~~ssGN~g~ 85 (329)
T PRK14045 11 KFPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA----DV-VITVGAVHSNHAF 85 (329)
T ss_pred cCCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC----CE-EEEeCccHHHHHH
Confidence 44688899999999999999888889999999999996 89999999999999999886 33 55 689999999
Q ss_pred HHHHHHHHCCCcEEEEecCCCcHH-HHHHHHHcCCEEEEeCCCCC---hHHHHHHHHHHhhcCCCeEe-cCCCCCCchHH
Q 025563 92 GLAFIAALRGYKLIIVMPSIASME-RRIVLRALGAEVYLADQAGG---FEGILRKGEEILSNTPNGFM-FRQFENPANPK 166 (251)
Q Consensus 92 alA~~a~~~G~~~~ivvp~~~~~~-~~~~~~~~Ga~v~~v~~~~~---~~~~~~~a~~~~~~~~~~~~-~~~~~n~~~~~ 166 (251)
|+|++|+++|++|++|||...+.. +...++.+||+++.++...+ .+.+.+.+++++++.+..|+ .+++.|+.+..
T Consensus 86 alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~~~ 165 (329)
T PRK14045 86 VTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVGTL 165 (329)
T ss_pred HHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhHHH
Confidence 999999999999999999875433 66678999999998874322 23556666666666544555 56778998886
Q ss_pred HHHhhHHHHHhhhhC---CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCC
Q 025563 167 IHYETTGPEIWKDSG---GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTE 220 (251)
Q Consensus 167 ~g~~t~~~EI~~q~~---~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~ 220 (251)
|+.+...||++|++ .++|+||+|+|||||++|++.+++..+|++|||||+|.+
T Consensus 166 -g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 166 -GYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred -HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 66555669999986 379999999999999999999999999999999999977
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.8e-33 Score=250.20 Aligned_cols=199 Identities=24% Similarity=0.207 Sum_probs=180.0
Q ss_pred HhhcccCCCcceecccccccCCc---eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHH
Q 025563 19 DATQLIGNTPMVYLNNVVDGCVA---RIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAF 95 (251)
Q Consensus 19 ~v~~~~~~TPl~~~~~l~~~~g~---~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 95 (251)
.+....+.||+++.+++...++. ++|+|.|+.|||||||||++..++..+.+.|. . .|+++||||+|.|+|.
T Consensus 69 ~~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~----~-~I~~ASSGnTgAs~aa 143 (411)
T COG0498 69 AVSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA----K-TILCASSGNTGASAAA 143 (411)
T ss_pred hhhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC----C-EEEEeCCchHHHHHHH
Confidence 45667889999999888887774 59999999999999999999999999999883 2 4999999999999999
Q ss_pred HHHHCCCcEEEEecCC-CcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHH
Q 025563 96 IAALRGYKLIIVMPSI-ASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGP 174 (251)
Q Consensus 96 ~a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 174 (251)
++.+.|++|.|++|++ ++..|+.++..+|++++.+++ +||+|++.+++++++. +.++....-||..++ |+.|+++
T Consensus 144 ya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G--~fDda~~~vk~~~~~~-~~~~~~nsiNp~rle-gq~t~~f 219 (411)
T COG0498 144 YAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDG--NFDDAQELVKEAANRE-GLLSAVNSINPYRLE-GQKTYAF 219 (411)
T ss_pred HhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcC--cHHHHHHHHHHHHhhC-CceeeccccCHHHhh-hhhhhHh
Confidence 9999999999999998 999999999999999999998 6999999999999976 557777788999997 9999999
Q ss_pred HHhhhhC-CCCCEEEEecCchhHHHHHHHHHHhhCC------CcEEEEEeCCCCccccC
Q 025563 175 EIWKDSG-GDVDILVAGIGTGGTVTGSGRFLKEKNP------NIKVYGVEPTESAMLNG 226 (251)
Q Consensus 175 EI~~q~~-~~~d~vv~~vGtGg~~~Gi~~~~~~~~~------~~~vigVep~~s~~~~~ 226 (251)
||++|+. ..||+|++|+|+||.+.|++.+|++..+ .+++.+||++++.++..
T Consensus 220 e~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~ 278 (411)
T COG0498 220 EIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVY 278 (411)
T ss_pred HHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhh
Confidence 9999997 4799999999999999999999998754 38999999999877653
No 80
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.97 E-value=1.7e-29 Score=216.78 Aligned_cols=197 Identities=21% Similarity=0.242 Sum_probs=163.0
Q ss_pred hhccc-CCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHH
Q 025563 20 ATQLI-GNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAA 98 (251)
Q Consensus 20 v~~~~-~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 98 (251)
+..+. +||||...++|++.+|.+||+|||++|.+|+||...+...+.-|.+.|+ +..|.+..+|.||.|.|.+|+
T Consensus 49 l~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A 124 (396)
T COG0133 49 LKDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAAA 124 (396)
T ss_pred HHHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHH
Confidence 33455 4599999999999999999999999999999999999999988999997 455778888999999999999
Q ss_pred HCCCcEEEEecC-CC--cHHHHHHHHHcCCEEEEeC-CCCChHHHHHHH-HHHhhcCCCeEecC-----CCCCCchHHHH
Q 025563 99 LRGYKLIIVMPS-IA--SMERRIVLRALGAEVYLAD-QAGGFEGILRKG-EEILSNTPNGFMFR-----QFENPANPKIH 168 (251)
Q Consensus 99 ~~G~~~~ivvp~-~~--~~~~~~~~~~~Ga~v~~v~-~~~~~~~~~~~a-~~~~~~~~~~~~~~-----~~~n~~~~~~g 168 (251)
++|++|+|||-. ++ +..++-.|+.+||+|+.|. ++.++.|+.+.| +.+.......+|+- |..-|.....-
T Consensus 125 ~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdF 204 (396)
T COG0133 125 LFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDF 204 (396)
T ss_pred HhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHH
Confidence 999999999955 33 3456778999999999996 456778888776 55666665666643 33345555568
Q ss_pred HhhHHHHHhhhhC----CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCC
Q 025563 169 YETTGPEIWKDSG----GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTES 221 (251)
Q Consensus 169 ~~t~~~EI~~q~~----~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s 221 (251)
++.++.|.-+|+. ..||+||.|||+|+.+.|+...|.. .+++++||||+.|-
T Consensus 205 Q~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~ 260 (396)
T COG0133 205 QSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGK 260 (396)
T ss_pred HHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCcC
Confidence 8999999988853 4599999999999999999999976 46799999999874
No 81
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.95 E-value=1.6e-27 Score=205.13 Aligned_cols=236 Identities=23% Similarity=0.185 Sum_probs=179.5
Q ss_pred ccccchhhHHHHHHHhhccc-CCCcceecccccccCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEE
Q 025563 5 ASMEDNHHKRAIKKDATQLI-GNTPMVYLNNVVDGCV--ARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVL 81 (251)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~-~~TPl~~~~~l~~~~g--~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~v 81 (251)
.|+++..+|..-...++..+ +||||++..+|.+.+| ++||+|.|...|+||||...|....-.+...|. +..+
T Consensus 56 ~s~eR~i~IP~Ev~e~Y~~~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~----~rl~ 131 (432)
T COG1350 56 FSGERYIKIPEEVREAYLQIGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA----KRLT 131 (432)
T ss_pred hhhhhcccCcHHHHHHHHHhCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc----eeee
Confidence 45555555655555566667 6899999999988876 599999999999999999999999888888886 3335
Q ss_pred EEeccChHHHHHHHHHHHCCCcEEEEecCC---CcHHHHHHHHHcCCEEEEeCCCCCh----------------HHHHHH
Q 025563 82 IETTGGNTGIGLAFIAALRGYKLIIVMPSI---ASMERRIVLRALGAEVYLADQAGGF----------------EGILRK 142 (251)
Q Consensus 82 v~~ssGN~g~alA~~a~~~G~~~~ivvp~~---~~~~~~~~~~~~Ga~v~~v~~~~~~----------------~~~~~~ 142 (251)
.+.++|.+|.|++++|+.+|++|+|||-+. ..+.+..+|+.|||+|+..+...+. .=++..
T Consensus 132 TETGAGQWGsAlslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISE 211 (432)
T COG1350 132 TETGAGQWGSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISE 211 (432)
T ss_pred cccCCchHHHHHHHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHH
Confidence 566779999999999999999999999663 4567888999999999998754211 124556
Q ss_pred HHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhh---CCCCCEEEEecCchhHHHHHHHHHHhh---C-CCcEEEE
Q 025563 143 GEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDS---GGDVDILVAGIGTGGTVTGSGRFLKEK---N-PNIKVYG 215 (251)
Q Consensus 143 a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~---~~~~d~vv~~vGtGg~~~Gi~~~~~~~---~-~~~~vig 215 (251)
|-+.+-++++..|....--.... .|+..+|.|..+|+ +..||.+|.|||+|+.++|+..-|... + ...++|+
T Consensus 212 AiE~al~~~~~kY~lGSVlnhvl-lhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiA 290 (432)
T COG1350 212 AIEYALKNENTKYSLGSVLNHVL-LHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIA 290 (432)
T ss_pred HHHHHHhCCCceecchhHHHHHH-HHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEE
Confidence 66665555555665444333344 49999999996665 467999999999999999999877543 2 2389999
Q ss_pred EeCCCCccccCCCCC-----------ceeecccCCcccccc
Q 025563 216 VEPTESAMLNGGQPG-----------RLLFFLFFLFFFCFF 245 (251)
Q Consensus 216 Vep~~s~~~~~~~~~-----------~~~i~g~g~~~~~~~ 245 (251)
|||..||.+..|+.. --.+..||+-|+|--
T Consensus 291 vep~a~P~lT~GeY~YD~gDtagltPllKMyTlGhd~vpPp 331 (432)
T COG1350 291 VEPKACPKLTKGEYRYDFGDTAGLTPLLKMYTLGHDYVPPP 331 (432)
T ss_pred eCCccCCccccceeeccCCchhccchhhhhhccCCCccCCC
Confidence 999999998865322 234557777777643
No 82
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.95 E-value=4.3e-27 Score=201.43 Aligned_cols=203 Identities=20% Similarity=0.220 Sum_probs=166.9
Q ss_pred HHHHHhhcccCCCcceecccccccCCceEEEEeCCCCC--CCchhhHHHHHHHHHHHHcCCCCCCCeEEEEecc--ChHH
Q 025563 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEP--CCSVKDRIALSMIKDAEEKGLITPGKSVLIETTG--GNTG 90 (251)
Q Consensus 15 ~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~p--tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ss--GN~g 90 (251)
.-++|+....++||+.+++++++.+|.+||+||||+.+ .|++|.|+.++++.+|+.+|. + ++|++++ +||.
T Consensus 4 ~rf~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~----d-TlvT~GgiQSNh~ 78 (323)
T COG2515 4 SRFPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGA----D-TLVTYGGIQSNHV 78 (323)
T ss_pred ccCCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCC----c-EEEEecccchhHH
Confidence 34678888999999999999999999999999999965 689999999999999999985 3 4888888 9999
Q ss_pred HHHHHHHHHCCCcEEEEecCCC----cHHHHHHHHHcCCEEEEeCCCCCh--HHHHHHHHHHhhcCCC-eEecCC-CCCC
Q 025563 91 IGLAFIAALRGYKLIIVMPSIA----SMERRIVLRALGAEVYLADQAGGF--EGILRKGEEILSNTPN-GFMFRQ-FENP 162 (251)
Q Consensus 91 ~alA~~a~~~G~~~~ivvp~~~----~~~~~~~~~~~Ga~v~~v~~~~~~--~~~~~~a~~~~~~~~~-~~~~~~-~~n~ 162 (251)
+++|++|+++|++|+.++.... ...++...+.+|+++..++...+. +.-.+...+..++.++ .|.+.. ..|+
T Consensus 79 r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~ 158 (323)
T COG2515 79 RQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSP 158 (323)
T ss_pred HHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcCc
Confidence 9999999999999999996543 234777888999999999987555 3233333333333333 344443 3466
Q ss_pred chHHHHHhhHHHHHhhhhC--CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcc
Q 025563 163 ANPKIHYETTGPEIWKDSG--GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAM 223 (251)
Q Consensus 163 ~~~~~g~~t~~~EI~~q~~--~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~ 223 (251)
.... ||...+.||.+|.+ -.+|.||+++|||||.||+..++...+++++|||+...+.+.
T Consensus 159 ~g~l-Gyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~ 220 (323)
T COG2515 159 LGAL-GYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPE 220 (323)
T ss_pred cccc-cHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHH
Confidence 5554 99999999999987 579999999999999999999999999999999999887754
No 83
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.93 E-value=1.6e-25 Score=194.36 Aligned_cols=207 Identities=20% Similarity=0.203 Sum_probs=154.0
Q ss_pred chhhHHHHHHHhhc-ccCCCcceecccccccC--CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEec
Q 025563 9 DNHHKRAIKKDATQ-LIGNTPMVYLNNVVDGC--VARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETT 85 (251)
Q Consensus 9 ~~~~~~~~~~~v~~-~~~~TPl~~~~~l~~~~--g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s 85 (251)
+++++.+-+..++. ..++|||++.++|.+.+ |.+||+|+|++|++||||...|...+..+.+.|+ +..|.+.+
T Consensus 104 ~d~df~ee~~eiy~y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETG 179 (477)
T KOG1395|consen 104 RDEDFWEEFLEIYKYLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETG 179 (477)
T ss_pred ccchHHHHHHHHHHHcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccC
Confidence 45555555566664 45679999999998877 5799999999999999999999988888888887 44577888
Q ss_pred cChHHHHHHHHHHHCCCcEEEEecCC---CcHHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHHH-hhcCCCeEecC---
Q 025563 86 GGNTGIGLAFIAALRGYKLIIVMPSI---ASMERRIVLRALGAEVYLADQ-AGGFEGILRKGEEI-LSNTPNGFMFR--- 157 (251)
Q Consensus 86 sGN~g~alA~~a~~~G~~~~ivvp~~---~~~~~~~~~~~~Ga~v~~v~~-~~~~~~~~~~a~~~-~~~~~~~~~~~--- 157 (251)
+|.||.|+|.+|+++|++|+|+|-.. ..+.++-+||.+||+|+.|.. ...++++-..+-++ .....-.+|+-
T Consensus 180 AGQhGvatA~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~ 259 (477)
T KOG1395|consen 180 AGQHGVATATACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSA 259 (477)
T ss_pred CCccchHHHHHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeeccc
Confidence 89999999999999999999999543 346678889999999999964 23444444444222 22222233322
Q ss_pred --CCCCCchHHHHHhhHHHHHhhhh----CCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCC
Q 025563 158 --QFENPANPKIHYETTGPEIWKDS----GGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTE 220 (251)
Q Consensus 158 --~~~n~~~~~~g~~t~~~EI~~q~----~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~ 220 (251)
++--|.....-+.+++.|-..|. +..||.||.|+|+|+..+|+..-|.. ...++.+|||..+
T Consensus 260 ~gphp~pt~vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~-dk~v~~igveaag 327 (477)
T KOG1395|consen 260 IGPHPYPTVVRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIR-DKSVGMIGVEAAG 327 (477)
T ss_pred CCCCCcHHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhc-cchhheeeeeecc
Confidence 22222333346678888876664 34699999999999999999999876 3448899988765
No 84
>PRK09225 threonine synthase; Validated
Probab=99.90 E-value=1.6e-22 Score=186.95 Aligned_cols=181 Identities=14% Similarity=0.095 Sum_probs=147.2
Q ss_pred CCcceecccccccCCceEEEEeCCCCCCCchhhHHHHH---HHHHHHHcCCCCCCCeEEEEeccChHHHHH-HHHHHHCC
Q 025563 26 NTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALS---MIKDAEEKGLITPGKSVLIETTGGNTGIGL-AFIAALRG 101 (251)
Q Consensus 26 ~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~---~l~~a~~~g~~~~g~~~vv~~ssGN~g~al-A~~a~~~G 101 (251)
.+||.++. -++|+.--+.+||||||||++.. ++..+++ +. ...|+++||||+|.|+ +.++.+.|
T Consensus 88 ~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g 155 (462)
T PRK09225 88 IAPLVQLD-------DNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN 155 (462)
T ss_pred ccceEEeC-------CCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence 47887764 25888777889999999999988 7777776 42 3359999999999998 78889999
Q ss_pred CcEEEEecCC-CcHHHHHHHHHc-CCEE--EEeCCCCChHHHHHHHHHHhhc------CCCeEecCCCCCCchHHHHHhh
Q 025563 102 YKLIIVMPSI-ASMERRIVLRAL-GAEV--YLADQAGGFEGILRKGEEILSN------TPNGFMFRQFENPANPKIHYET 171 (251)
Q Consensus 102 ~~~~ivvp~~-~~~~~~~~~~~~-Ga~v--~~v~~~~~~~~~~~~a~~~~~~------~~~~~~~~~~~n~~~~~~g~~t 171 (251)
++|+|++|++ ++..++.+|..+ |++| +.|++ ++++|.+.++++.++ . +++-.+. -|+.+++ |+.+
T Consensus 156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G--~fDD~q~~vk~~~~d~~~~~~~-~l~saNS-iN~~Ri~-gQ~~ 230 (462)
T PRK09225 156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEG--NFDDCQALVKAAFNDEELKEKL-KLSSANS-INIGRLL-AQIV 230 (462)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCC--CHHHHHHHHHHHhhchhhhhcC-ceEEEec-cCHHHHH-HHHH
Confidence 9999999986 999999999999 8977 66666 699999998887655 3 4444555 4888886 9999
Q ss_pred HHHHHhhhhCC---CCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccc
Q 025563 172 TGPEIWKDSGG---DVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAML 224 (251)
Q Consensus 172 ~~~EI~~q~~~---~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~ 224 (251)
.++|+.+|+.. .||.|++|+|+||.+.|.+.+.+---|-.|+++++ ..++++
T Consensus 231 yyfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~-n~n~~l 285 (462)
T PRK09225 231 YYFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVAT-NENDVL 285 (462)
T ss_pred HHHHHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEe-cCChHH
Confidence 99999999963 48999999999999999999833323656999997 555444
No 85
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.89 E-value=1.3e-21 Score=180.98 Aligned_cols=181 Identities=13% Similarity=0.043 Sum_probs=146.7
Q ss_pred CCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHH---HHHHHHcCCCCCCCeEEEEeccChHHHH-HHHHHHHCC
Q 025563 26 NTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSM---IKDAEEKGLITPGKSVLIETTGGNTGIG-LAFIAALRG 101 (251)
Q Consensus 26 ~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~---l~~a~~~g~~~~g~~~vv~~ssGN~g~a-lA~~a~~~G 101 (251)
-+||.++. -++|++..+.+||||||||++..+ +..++++.. +...|+++||||+|.| ++.++.+.|
T Consensus 87 ~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~---~~~~Il~ATSGdTG~Aa~aaf~~~~g 156 (460)
T cd01560 87 IAPLVQLG-------DNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRN---ERITILVATSGDTGSAAIEGFRGKPN 156 (460)
T ss_pred ccceEEeC-------CCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcC---CCeEEEEcCCCcHHHHHHHHHhCcCC
Confidence 37777754 268999999999999999999876 666665421 2445999999999999 588899999
Q ss_pred CcEEEEecCC-CcHHHHHHHHHcCC---EEEEeCCCCChHHHHHHHHHHhhcC-----CCeEecCCCCCCchHHHHHhhH
Q 025563 102 YKLIIVMPSI-ASMERRIVLRALGA---EVYLADQAGGFEGILRKGEEILSNT-----PNGFMFRQFENPANPKIHYETT 172 (251)
Q Consensus 102 ~~~~ivvp~~-~~~~~~~~~~~~Ga---~v~~v~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~n~~~~~~g~~t~ 172 (251)
++|+|++|.+ +++.++.+|..+|+ +++.|++ +|++|.+.++++.++. -+++-.+. -|+.+++ ++.+.
T Consensus 157 i~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G--~fDd~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri~-~Q~~y 232 (460)
T cd01560 157 VDVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEG--DFDDCQSLVKALFADEDFNKKLKLSSANS-INWARIL-AQIVY 232 (460)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcC--CHHHHHHHHHHHhcChhhHhcceEEEEec-cCHHHHH-HHHHH
Confidence 9999999986 99999999999996 8888887 6999999988876542 13444444 4888886 99999
Q ss_pred HHHHhhhhCC----CCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCC
Q 025563 173 GPEIWKDSGG----DVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTE 220 (251)
Q Consensus 173 ~~EI~~q~~~----~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~ 220 (251)
+.|+++|+.. .+|.|+||+|+||.+.|.+.+.+---|-.|+++++.+.
T Consensus 233 yf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n 284 (460)
T cd01560 233 YFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNEN 284 (460)
T ss_pred HHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCC
Confidence 9999999853 58999999999999999999865434667899975543
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.81 E-value=5.9e-19 Score=151.29 Aligned_cols=201 Identities=21% Similarity=0.247 Sum_probs=169.2
Q ss_pred ccCCCcceecccccc----cC----CceEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCC-----------
Q 025563 23 LIGNTPMVYLNNVVD----GC----VARIAAKLEMMEP-CCSVKDRIALSMIKD-----AEEKGLITPG----------- 77 (251)
Q Consensus 23 ~~~~TPl~~~~~l~~----~~----g~~i~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~g----------- 77 (251)
.+-..||+..+.+.+ ++ ..++|+|.|+.-| +||.|.|+..|-+.. |++.|.++..
T Consensus 75 GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f 154 (443)
T COG3048 75 GIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEF 154 (443)
T ss_pred CeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHH
Confidence 455678887765532 22 2389999999998 899999988777653 5667765422
Q ss_pred -----CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCC
Q 025563 78 -----KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPN 152 (251)
Q Consensus 78 -----~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~ 152 (251)
.-.+...|+||.|.++..+++.+|+++++.|+.+...+|.+.+|..|.+|+..+. ||..+.+.-++-+++.|.
T Consensus 155 ~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~--DY~~AVeeGRk~a~~DP~ 232 (443)
T COG3048 155 KDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQ--DYGVAVEEGRKEAESDPN 232 (443)
T ss_pred HHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecc--hhhHHHHHhhhhhccCCc
Confidence 1237889999999999999999999999999999999999999999999999987 799999999999999999
Q ss_pred eEecCCCCCCchHHHHHhhHHHHHhhhhC--------CCCCEEEEecCchhHHHHHHHHHHhhC-CCcEEEEEeCCCCcc
Q 025563 153 GFMFRQFENPANPKIHYETTGPEIWKDSG--------GDVDILVAGIGTGGTVTGSGRFLKEKN-PNIKVYGVEPTESAM 223 (251)
Q Consensus 153 ~~~~~~~~n~~~~~~g~~t~~~EI~~q~~--------~~~d~vv~~vGtGg~~~Gi~~~~~~~~-~~~~vigVep~~s~~ 223 (251)
.||++.-++..... ||...+.-+-.|+. ..|-.|..|+|.||.-.|++.++|... .++.++-+||.+|||
T Consensus 233 c~FiDDE~S~~LFL-GYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPthsPc 311 (443)
T COG3048 233 CFFIDDENSRTLFL-GYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPC 311 (443)
T ss_pred eEEecccchhhhhh-hHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCChH
Confidence 99999876666664 99999999988874 247789999999999999999999874 679999999999999
Q ss_pred ccC
Q 025563 224 LNG 226 (251)
Q Consensus 224 ~~~ 226 (251)
+.-
T Consensus 312 MlL 314 (443)
T COG3048 312 MLL 314 (443)
T ss_pred HHH
Confidence 863
No 87
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=93.95 E-value=0.5 Score=38.25 Aligned_cols=120 Identities=17% Similarity=0.113 Sum_probs=72.5
Q ss_pred HHHHHHHHHHCCCcEE-EEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHH
Q 025563 90 GIGLAFIAALRGYKLI-IVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH 168 (251)
Q Consensus 90 g~alA~~a~~~G~~~~-ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 168 (251)
|..+.++++.+|.++. -+...+.-...++.+...+-.|.++++. .....+.+..+.+++|+.-.+..++.+.+.. -
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~-~ 89 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYFDEE-E 89 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCCChh-h
Confidence 4788999999998873 3333344455666777888999999985 3445556677778887765554333333221 2
Q ss_pred HhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEE
Q 025563 169 YETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGV 216 (251)
Q Consensus 169 ~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigV 216 (251)
...+..+|-+ ..||.|+++.|+---= -.....+..-+..=+++|
T Consensus 90 ~~~i~~~I~~---~~pdiv~vglG~PkQE-~~~~~~~~~l~~~v~i~v 133 (172)
T PF03808_consen 90 EEAIINRINA---SGPDIVFVGLGAPKQE-RWIARHRQRLPAGVIIGV 133 (172)
T ss_pred HHHHHHHHHH---cCCCEEEEECCCCHHH-HHHHHHHHHCCCCEEEEE
Confidence 3333333332 4689999999988632 223334433343345555
No 88
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=92.25 E-value=1.6 Score=35.22 Aligned_cols=121 Identities=21% Similarity=0.169 Sum_probs=71.5
Q ss_pred HHHHHHHHHHCCCcEEEEecC-CCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHH
Q 025563 90 GIGLAFIAALRGYKLIIVMPS-IASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH 168 (251)
Q Consensus 90 g~alA~~a~~~G~~~~ivvp~-~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 168 (251)
|..+.++++.+|.+..--++. +.-..-++.+...+.+|..+++. .+...+.++.+.+++|+.-.+...+.+...+ .
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~--~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~-~ 87 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK--PEVLEKAAERLRARYPGLKIVGYHHGYFGPE-E 87 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCcEEEEecCCCCChh-h
Confidence 477889999999883323322 22344566667778999999874 3344445567778887765543333333322 1
Q ss_pred HhhHHHHHhhhhC-CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeC
Q 025563 169 YETTGPEIWKDSG-GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEP 218 (251)
Q Consensus 169 ~~t~~~EI~~q~~-~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep 218 (251)
.. +|.++++ ..||.|+++.|+---= -.+...++..+..-+++|-.
T Consensus 88 ~~----~i~~~I~~~~pdiv~vglG~PkQE-~~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 88 EE----EIIERINASGADILFVGLGAPKQE-LWIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred HH----HHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHHHCCCCEEEEece
Confidence 12 2444443 3699999999987632 33444444444455666643
No 89
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=89.40 E-value=4 Score=33.31 Aligned_cols=118 Identities=15% Similarity=0.142 Sum_probs=65.4
Q ss_pred HHHHHHHHHHCCCcEEEEecC-CCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHH
Q 025563 90 GIGLAFIAALRGYKLIIVMPS-IASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH 168 (251)
Q Consensus 90 g~alA~~a~~~G~~~~ivvp~-~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 168 (251)
|..+.++++.+|.+..--++. +.-...++.....|..|.++++. -....+.++.+.+++|+.-.+.. +.+...+ -
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~--~~v~~~~~~~l~~~yP~l~i~g~-~g~f~~~-~ 88 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK--PDVLQQLKVKLIKEYPKLKIVGA-FGPLEPE-E 88 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCCEEEEE-CCCCChH-H
Confidence 367888999998764322222 12234455566778899999874 33445556777778876543321 2222221 1
Q ss_pred HhhHHHHHhhhhC-CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEE
Q 025563 169 YETTGPEIWKDSG-GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGV 216 (251)
Q Consensus 169 ~~t~~~EI~~q~~-~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigV 216 (251)
. .+|.+++. ..+|.|+|+.|+=-== -...-.+...+..-++||
T Consensus 89 ~----~~i~~~I~~s~~dil~VglG~PkQE-~~~~~~~~~~~~~v~~gv 132 (177)
T TIGR00696 89 R----KAALAKIARSGAGIVFVGLGCPKQE-IWMRNHRHLKPDAVMIGV 132 (177)
T ss_pred H----HHHHHHHHHcCCCEEEEEcCCcHhH-HHHHHhHHhCCCcEEEEe
Confidence 1 23444442 3599999999976521 112223333444455665
No 90
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=88.71 E-value=9.1 Score=31.85 Aligned_cols=51 Identities=31% Similarity=0.378 Sum_probs=42.0
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
+|...+|+.|..++.+....+.++.+++... +....+.++..|++++..+-
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d~ 52 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEADY 52 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-T
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeeccc
Confidence 6777889999999999999999999998766 55667778889999986653
No 91
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=88.45 E-value=3.8 Score=30.66 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=21.6
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 90 GIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 90 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
|......|+.+|.+++++. .++.+++.++.+||+.+....
T Consensus 3 G~~a~q~ak~~G~~vi~~~---~~~~k~~~~~~~Ga~~~~~~~ 42 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATD---RSEEKLELAKELGADHVIDYS 42 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEE---SSHHHHHHHHHTTESEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEE---CCHHHHHHHHhhccccccccc
Confidence 4555556666673333332 234566666667765555443
No 92
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=88.33 E-value=5.8 Score=35.47 Aligned_cols=58 Identities=26% Similarity=0.440 Sum_probs=44.0
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~ 131 (251)
...+++|++.+|.+.+|.-|....-.|+.+|...++.+ .+..+.+.++.+||+.+.--
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~---~s~~k~~~~~~lGAd~vi~y 194 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVV---SSSEKLELLKELGADHVINY 194 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEe---cCHHHHHHHHhcCCCEEEcC
Confidence 45567788888888899999999999999998444433 23466669999999776653
No 93
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=88.22 E-value=4.1 Score=36.41 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=40.9
Q ss_pred CCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 75 ~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
.+|.+.+|. ++|..|...+..++.+|.+++++.+...++.+++.++.+|++.+
T Consensus 171 ~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 171 WNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 456664444 67999999999999999976665554456789999999999864
No 94
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=87.16 E-value=10 Score=34.69 Aligned_cols=56 Identities=29% Similarity=0.352 Sum_probs=42.5
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
.+..+.+|++.+| ..+|..|.+++..|+.+|.+.+++. +..+.+++..+.+|++.+
T Consensus 179 ~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~--d~~~~r~~~a~~~Ga~~v 234 (393)
T TIGR02819 179 VTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVG--DLNPARLAQARSFGCETV 234 (393)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHcCCeEE
Confidence 3445667777555 6779999999999999999876644 234678999999999853
No 95
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=87.12 E-value=5.8 Score=35.12 Aligned_cols=88 Identities=25% Similarity=0.262 Sum_probs=61.2
Q ss_pred eEEEEeCCCCC-----CCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCC-CcHH
Q 025563 42 RIAAKLEMMEP-----CCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSI-ASME 115 (251)
Q Consensus 42 ~i~~K~E~~~p-----tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~-~~~~ 115 (251)
+-++|.++.-| |-+.---.|+-|+.+-.+-. +|+..+--+..+--|+++--.|+.+|++.+-++... ..++
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~---~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~iee 200 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLN---KGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEE 200 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcC---CCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHH
Confidence 46778777554 44566667888888866543 355422223334456777778999999999998654 4456
Q ss_pred HHHHHHHcCCEEEEeCC
Q 025563 116 RRIVLRALGAEVYLADQ 132 (251)
Q Consensus 116 ~~~~~~~~Ga~v~~v~~ 132 (251)
..++++.+||+-++.+.
T Consensus 201 l~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 201 LKKQLKSLGATEVITEE 217 (354)
T ss_pred HHHHHHHcCCceEecHH
Confidence 67789999999998864
No 96
>PRK07109 short chain dehydrogenase; Provisional
Probab=86.93 E-value=22 Score=31.68 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=46.5
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
++.+|+..+|--|.++|....+.|.+++++..... .....+.++..|++++.+..+ .+.++..+.+.+..++.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 45688888899999999999999998777654321 122345566778887655432 24444444445444443
No 97
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=86.84 E-value=18 Score=32.11 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=40.8
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
.+..+.+|++ |+..++|..|.+++.+++.+|.+++ ++ +.++.+++.++.+|++.+..
T Consensus 160 ~~~~~~~g~~-VlV~G~G~vG~~a~~~a~~~G~~vi-~~--~~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 160 VQAGLKKGDL-VIVIGAGGVGGYMVQTAKAMGAAVV-AI--DIDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HhcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCeEE-EE--cCCHHHHHHHHHhCCceEec
Confidence 3444667777 4545559999999999999999643 33 33567888889999975543
No 98
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=86.79 E-value=10 Score=33.05 Aligned_cols=59 Identities=24% Similarity=0.322 Sum_probs=43.3
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~ 131 (251)
+...+.+|++.+|...+|..|.++.-.|+.+|.+++++. .++.+.+.++.+|++-+.-.
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi~~ 195 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVFNY 195 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEEeC
Confidence 345567778866666679999999999999999854443 34578888888998654443
No 99
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.00 E-value=10 Score=33.61 Aligned_cols=75 Identities=28% Similarity=0.336 Sum_probs=55.4
Q ss_pred CCCeEEEEeccChHHHHHHHHHHHCCCcEEEEe-cCCCcHHHHHHHHHcC-CEEEEeCCCCChHHHHHHHHHHhhcCC
Q 025563 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVM-PSIASMERRIVLRALG-AEVYLADQAGGFEGILRKGEEILSNTP 151 (251)
Q Consensus 76 ~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivv-p~~~~~~~~~~~~~~G-a~v~~v~~~~~~~~~~~~a~~~~~~~~ 151 (251)
.|+..+|+.+++-.|+++|.--+++|-+.+++= ...-..+..+.++..| ++-..|+-+ +.++..+.+++..++.+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis-~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDIS-DREEIYRLAKKVKKEVG 113 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCC-CHHHHHHHHHHHHHhcC
Confidence 356668888888999999999999998555442 2233466777788777 455666665 67888999999988873
No 100
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=85.67 E-value=7.3 Score=33.57 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=40.0
Q ss_pred CCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 74 ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 74 ~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
..+|++ ++...+|..|...+..++.+|.+.++++ +.++.+++.++.+|++.+.
T Consensus 118 ~~~g~~-VlV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 118 DLKGRR-VLVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALA 170 (280)
T ss_pred CCCCCE-EEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEec
Confidence 346777 4555679999999999999999855555 4456788889999996544
No 101
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=84.89 E-value=6.3 Score=34.98 Aligned_cols=59 Identities=22% Similarity=0.185 Sum_probs=43.3
Q ss_pred cCCCCCCCeEEEEecc---ChHHHHHHHHHHHCCCcEEEEecCCC--cHHHHHHHHHcCCEEEEeC
Q 025563 71 KGLITPGKSVLIETTG---GNTGIGLAFIAALRGYKLIIVMPSIA--SMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ss---GN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~v~ 131 (251)
.|.++ |.+ |...+. +|.++++..+++++|++++++.|+.. ++..++.++..|+++...+
T Consensus 145 ~g~l~-g~~-va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 145 FGRLD-GLK-IALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred hCCCC-CCE-EEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 45443 344 444444 69999999999999999999999864 4555666777788877664
No 102
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=83.90 E-value=19 Score=34.63 Aligned_cols=51 Identities=24% Similarity=0.198 Sum_probs=40.9
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA 133 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~ 133 (251)
+++..+.|+.|+.+|..-++.|.+++++ + .++++.+.++..|.+++.-+..
T Consensus 419 hiiI~G~G~~G~~la~~L~~~g~~vvvI-d--~d~~~~~~~~~~g~~~i~GD~~ 469 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAAGIPLVVI-E--TSRTRVDELRERGIRAVLGNAA 469 (558)
T ss_pred CEEEECCChHHHHHHHHHHHCCCCEEEE-E--CCHHHHHHHHHCCCeEEEcCCC
Confidence 4888999999999999999999987665 2 3356788888888888777664
No 103
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=83.84 E-value=19 Score=32.25 Aligned_cols=87 Identities=15% Similarity=0.191 Sum_probs=53.4
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCCCCh-HHHHHHHHHHhhcCCCeEecC
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQAGGF-EGILRKGEEILSNTPNGFMFR 157 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~~~~-~~~~~~a~~~~~~~~~~~~~~ 157 (251)
+++.+++|..|.-.|+.=-..-=+.++++...+ ...-.+..+.+|++|..|+.+..- ..-....+.+++..|+.+|+-
T Consensus 70 tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~ 149 (385)
T KOG2862|consen 70 TFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVT 149 (385)
T ss_pred eEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEE
Confidence 388888888776655543333233333333333 445577889999999999653111 112334566677778889988
Q ss_pred CCCCCchHH
Q 025563 158 QFENPANPK 166 (251)
Q Consensus 158 ~~~n~~~~~ 166 (251)
+.+....+.
T Consensus 150 hgdsSTgV~ 158 (385)
T KOG2862|consen 150 HGDSSTGVL 158 (385)
T ss_pred ecCcccccc
Confidence 877665543
No 104
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=83.76 E-value=14 Score=30.54 Aligned_cols=67 Identities=25% Similarity=0.149 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHc---CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHH-HHcCCEEE
Q 025563 58 DRIALSMIKDAEEK---GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVL-RALGAEVY 128 (251)
Q Consensus 58 ~R~a~~~l~~a~~~---g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~-~~~Ga~v~ 128 (251)
-++..+.+..+.+. +.--.|++ ++..+.||.|..+|......|.++++ .+. +..+++.+ ..+|++.+
T Consensus 6 g~Gv~~~~~~~~~~~~~~~~l~gk~-v~I~G~G~vG~~~A~~L~~~G~~Vvv-~D~--~~~~~~~~~~~~g~~~v 76 (200)
T cd01075 6 AYGVFLGMKAAAEHLLGTDSLEGKT-VAVQGLGKVGYKLAEHLLEEGAKLIV-ADI--NEEAVARAAELFGATVV 76 (200)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCE-EEEECCCHHHHHHHHHHHHCCCEEEE-EcC--CHHHHHHHHHHcCCEEE
Confidence 36777777777665 33223444 88888899999999999999998774 332 34444444 33476543
No 105
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=83.61 E-value=12 Score=31.48 Aligned_cols=72 Identities=25% Similarity=0.280 Sum_probs=45.8
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe--CCCCChHHHHHHHHHHhhcC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA--DQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v--~~~~~~~~~~~~a~~~~~~~ 150 (251)
++.+|+..+|.-|.++|......|.+++++-.........+.++..|.++..+ +-. +.++..+...+..++.
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~~~ 82 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLE-TYAGAQAAMAAAVEAF 82 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCC-CHHHHHHHHHHHHHHc
Confidence 45688888899999999999999998776644322223344555667776544 332 4445555555554443
No 106
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=83.47 E-value=9.7 Score=33.93 Aligned_cols=64 Identities=22% Similarity=0.326 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHH-cCCEEEE
Q 025563 60 IALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRA-LGAEVYL 129 (251)
Q Consensus 60 ~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~-~Ga~v~~ 129 (251)
.|++.+ ++-|..++|++.+|++.+|--|.-+.-.|+..|.+++-++. .++|.+.+.. +|-+...
T Consensus 137 TAY~gL---l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG---g~eK~~~l~~~lGfD~~i 201 (340)
T COG2130 137 TAYFGL---LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG---GAEKCDFLTEELGFDAGI 201 (340)
T ss_pred HHHHHH---HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecC---CHHHHHHHHHhcCCceee
Confidence 444444 34577778999899999999999999999999999888764 3578888877 6655543
No 107
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.90 E-value=6.7 Score=35.20 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=52.1
Q ss_pred HHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 67 DAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 67 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
+|-+++.+++|.+ ++..+.|--|...-.+|+.+|-+=++++ +..+.+++..+.+||+++.-..
T Consensus 160 HAcr~~~vk~Gs~-vLV~GAGPIGl~t~l~Aka~GA~~VVi~--d~~~~Rle~Ak~~Ga~~~~~~~ 222 (354)
T KOG0024|consen 160 HACRRAGVKKGSK-VLVLGAGPIGLLTGLVAKAMGASDVVIT--DLVANRLELAKKFGATVTDPSS 222 (354)
T ss_pred hhhhhcCcccCCe-EEEECCcHHHHHHHHHHHHcCCCcEEEe--ecCHHHHHHHHHhCCeEEeecc
Confidence 4556677778877 8999999999999999999999888877 5567899999999999876543
No 108
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=82.72 E-value=35 Score=30.49 Aligned_cols=147 Identities=14% Similarity=0.198 Sum_probs=76.0
Q ss_pred HHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCC--------C---cHHH---H--HH-HHHcC-
Q 025563 63 SMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSI--------A---SMER---R--IV-LRALG- 124 (251)
Q Consensus 63 ~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~--------~---~~~~---~--~~-~~~~G- 124 (251)
..+..+.+++. .-.++.....+........++..|+|++.+-... + .... . +. .+.+|
T Consensus 71 ~~i~~li~~~v----dgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~~~~~~~~~~V~~~~~~~~G~~~~~~l~~~l~~ 146 (336)
T PRK15408 71 QLINNFVNQGY----NAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAKQVGK 146 (336)
T ss_pred HHHHHHHHcCC----CEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCCCCCccceEEEecCCHHHHHHHHHHHHHHhcCC
Confidence 56666777765 2324433334433445555778899988774321 0 0111 1 11 22333
Q ss_pred --CEEEEeCCCCC---hHHHHHHHHH-HhhcCCCeEecC-CCCCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHH
Q 025563 125 --AEVYLADQAGG---FEGILRKGEE-ILSNTPNGFMFR-QFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTV 197 (251)
Q Consensus 125 --a~v~~v~~~~~---~~~~~~~a~~-~~~~~~~~~~~~-~~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~ 197 (251)
.+|..+.+..+ ..++.+-.++ +.+++|+.-.+. ++.+.. ...++. ...++++.- +++|.|+++ +...+
T Consensus 147 g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv~~~~~~~d-~~~a~~-~~~~lL~~~-pdi~aI~~~--~~~~~ 221 (336)
T PRK15408 147 DKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGYND-ATKSLQ-TAEGILKAY-PDLDAIIAP--DANAL 221 (336)
T ss_pred CCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEEeecCCCCc-HHHHHH-HHHHHHHHC-CCCcEEEEC--CCccH
Confidence 57755543211 1222232333 334556655554 233322 222433 444555543 678999987 33344
Q ss_pred HHHHHHHHhhCC-CcEEEEEeC
Q 025563 198 TGSGRFLKEKNP-NIKVYGVEP 218 (251)
Q Consensus 198 ~Gi~~~~~~~~~-~~~vigVep 218 (251)
.|+..++++.+. ++.|+|++-
T Consensus 222 ~Ga~~Al~~~g~~~v~VvG~D~ 243 (336)
T PRK15408 222 PAAAQAAENLKRDKVAIVGFST 243 (336)
T ss_pred HHHHHHHHhCCCCCEEEEEeCC
Confidence 588899988653 688899874
No 109
>PRK08643 acetoin reductase; Validated
Probab=82.67 E-value=19 Score=30.11 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=34.5
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcH-HHHHHHHHcCCEEEEeC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASM-ERRIVLRALGAEVYLAD 131 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~~~~~Ga~v~~v~ 131 (251)
++.+|+.++|.-|.++|....+.|.+++++....... .....++..+.++..+.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 57 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVK 57 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 3458888889999999999999999876664332111 22233444565655443
No 110
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=82.66 E-value=23 Score=34.56 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=40.3
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA 133 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~ 133 (251)
+++.++.|..|+.+|..-...|++++++ +.++.+++.++.+|.+++.=|..
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDat 452 (601)
T PRK03659 402 QVIIVGFGRFGQVIGRLLMANKMRITVL---ERDISAVNLMRKYGYKVYYGDAT 452 (601)
T ss_pred CEEEecCchHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhCCCeEEEeeCC
Confidence 4888999999999999999999998665 33467788888888777666553
No 111
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=82.55 E-value=23 Score=32.59 Aligned_cols=126 Identities=18% Similarity=0.224 Sum_probs=68.0
Q ss_pred EEeccC-hHHHHHHHHHHHCCCcEEEEec-CCCc----HHHHHHHHHcCC-EEEEeCCCCChHHHHHHHHHHhhcCCCeE
Q 025563 82 IETTGG-NTGIGLAFIAALRGYKLIIVMP-SIAS----MERRIVLRALGA-EVYLADQAGGFEGILRKGEEILSNTPNGF 154 (251)
Q Consensus 82 v~~ssG-N~g~alA~~a~~~G~~~~ivvp-~~~~----~~~~~~~~~~Ga-~v~~v~~~~~~~~~~~~a~~~~~~~~~~~ 154 (251)
+.+|+| .+...+.+...+.+++++.|.- -..+ ....+....+|| +++.++....|. .+.+....+. +..
T Consensus 2 LAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~--~~~i~~aI~a--nA~ 77 (388)
T PF00764_consen 2 LAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFA--EDYIFPAIKA--NAL 77 (388)
T ss_dssp EE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHH--HHTHHHHHHT--T--
T ss_pred eeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHH--HHHHHHHHHH--HHH
Confidence 445555 4566667777777789888762 2222 344556788999 999997632111 1222222222 233
Q ss_pred ecCCC---CCCchHHHHHhhHHHHHhhhhCCCCCEEEE-ecCchhHHHHHHHHHHhhCCCcEEEE
Q 025563 155 MFRQF---ENPANPKIHYETTGPEIWKDSGGDVDILVA-GIGTGGTVTGSGRFLKEKNPNIKVYG 215 (251)
Q Consensus 155 ~~~~~---~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~-~vGtGg~~~Gi~~~~~~~~~~~~vig 215 (251)
|-+.| ....++. ......|+.++. ..++|.. |+|.|--..=.-.+++...|+.+|++
T Consensus 78 Yeg~YpL~tsl~Rpl--Ia~~~v~~A~~~--ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 78 YEGRYPLSTSLARPL--IAKKLVEVAREE--GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp BTTTB--CCCCHHHH--HHHHHHHHHHHH--T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred hCCCccccccchHHH--HHHHHHHHHHHc--CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 33332 1223332 223334666665 4688887 66888888888888898899988874
No 112
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=82.46 E-value=23 Score=34.74 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=42.6
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA 133 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~ 133 (251)
+++.++.|..|+.+|..-++.|++++++ +.++.+++.++.+|.+++.=|..
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDat 452 (621)
T PRK03562 402 RVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDAT 452 (621)
T ss_pred cEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeCC
Confidence 4899999999999999999999998776 44567888888899888777664
No 113
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=82.27 E-value=19 Score=32.41 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=41.6
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
+...+.+|++.+| ..+|..|.+++..++.+|.+.++.+ +.++.+++.++.+|++.+..
T Consensus 185 ~~~~i~~g~~VlV-~G~G~vG~~a~~lak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i~ 242 (371)
T cd08281 185 NTAGVRPGQSVAV-VGLGGVGLSALLGAVAAGASQVVAV--DLNEDKLALARELGATATVN 242 (371)
T ss_pred hccCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCcEEEE--cCCHHHHHHHHHcCCceEeC
Confidence 3445667777555 4578999999999999999644444 33567888889999965443
No 114
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=82.27 E-value=15 Score=32.53 Aligned_cols=54 Identities=20% Similarity=0.216 Sum_probs=39.7
Q ss_pred CCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 74 ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 74 ~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
..+|++.+| .++|..|.+....++.+|.+.++.+. .++.+++.++.+||+.+.-
T Consensus 167 ~~~g~~VlV-~G~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi~ 220 (343)
T PRK09880 167 DLQGKRVFV-SGVGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLVN 220 (343)
T ss_pred CCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEec
Confidence 345677455 45799999999999999996555553 3467888899999976543
No 115
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=82.13 E-value=38 Score=30.48 Aligned_cols=51 Identities=25% Similarity=0.301 Sum_probs=42.8
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHH-cCCEEEEeCC
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRA-LGAEVYLADQ 132 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~-~Ga~v~~v~~ 132 (251)
+++...+|.-|...+.+++.+|...+|++ +.++.+++..+. .|++++..+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGADVVVNPS 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCCeEeecCc
Confidence 48999999999999999999999999988 556788888877 6777766654
No 116
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=82.08 E-value=21 Score=31.19 Aligned_cols=58 Identities=28% Similarity=0.389 Sum_probs=43.1
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
+.+.+.+|++.+|...+|--|.+++..|+..|.++++... ++.+.+.++.+|++.+.-
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFN 189 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 4455677887566666799999999999999997554432 456888889999965544
No 117
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=81.77 E-value=19 Score=32.17 Aligned_cols=57 Identities=26% Similarity=0.218 Sum_probs=41.4
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
+...+.+|++.+|. ++|-.|.+++..|+.+|.+.++.+ +.++.+++.++.+|++-+.
T Consensus 170 ~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~--~~~~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 170 NTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAV--DIDDRKLEWAREFGATHTV 226 (358)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHcCCceEE
Confidence 34556677875555 578999999999999998755555 3346788888999996443
No 118
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=81.48 E-value=27 Score=30.94 Aligned_cols=58 Identities=29% Similarity=0.411 Sum_probs=43.0
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
+...+.+|.+.+| ..+|..|.+++..|+.+|.+.++.+.. ++.+...++.+|++.+..
T Consensus 168 ~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v~~ 225 (350)
T cd08256 168 DRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVVLN 225 (350)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEEec
Confidence 4455667777555 667999999999999999887666544 356778888899865543
No 119
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=81.23 E-value=18 Score=30.51 Aligned_cols=74 Identities=22% Similarity=0.209 Sum_probs=46.2
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
+++.+|+..+|.-|.++|..-...|.+++++......+...+.+...+.++..+..+ .+.++..+.+++..++.
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 355688888899999999999999999888765522223334455566665444321 24444444555555443
No 120
>PRK05993 short chain dehydrogenase; Provisional
Probab=81.01 E-value=20 Score=30.69 Aligned_cols=67 Identities=24% Similarity=0.241 Sum_probs=45.4
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILS 148 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~ 148 (251)
++.+|+..+|.-|.++|......|.+++++... ..+++.+...+.+.+.++-. +.++..+...+..+
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl~-d~~~~~~~~~~~~~ 71 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDYA-EPESIAALVAQVLE 71 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccCC-CHHHHHHHHHHHHH
Confidence 455888888999999999998899987776533 34555566667777777654 44444444444433
No 121
>PRK06182 short chain dehydrogenase; Validated
Probab=80.86 E-value=23 Score=30.14 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=46.4
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~ 149 (251)
++.+|+.++|.-|.++|......|.+++++... ..+++.+...+.+.+.++-. +.++..+..++..++
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVT-DEASIKAAVDTIIAE 71 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCC-CHHHHHHHHHHHHHh
Confidence 455888888999999999998899988776543 34455555567777777654 444444445555444
No 122
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=80.83 E-value=2.4 Score=38.58 Aligned_cols=117 Identities=13% Similarity=0.171 Sum_probs=58.0
Q ss_pred HHHHcC-CEEEEeCCCCCh---HHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCch
Q 025563 119 VLRALG-AEVYLADQAGGF---EGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTG 194 (251)
Q Consensus 119 ~~~~~G-a~v~~v~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtG 194 (251)
.++.+| .++.+|+. || .+.-+.++++.++.++...-..| -|..- .-+..+..+|.+. +||.|+..+. |
T Consensus 128 ~~~~~G~~r~~lvGS--dYv~pre~Nri~r~~l~~~GgevvgE~Y-~plg~-td~~~ii~~I~~~---~Pd~V~stlv-G 199 (363)
T PF13433_consen 128 LLENFGAKRFYLVGS--DYVYPRESNRIIRDLLEARGGEVVGERY-LPLGA-TDFDPIIAEIKAA---KPDFVFSTLV-G 199 (363)
T ss_dssp HHHHS--SEEEEEEE--SSHHHHHHHHHHHHHHHHTT-EEEEEEE-E-S-H-HHHHHHHHHHHHH---T-SEEEEE---T
T ss_pred HHhccCCceEEEecC--CccchHHHHHHHHHHHHHcCCEEEEEEE-ecCCc-hhHHHHHHHHHhh---CCCEEEEeCc-C
Confidence 467889 99999987 44 35667778888877544322111 11111 2344555555543 5886555554 4
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCccccccccccCC
Q 025563 195 GTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFFFSFWPF 251 (251)
Q Consensus 195 g~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~~~~~~~ 251 (251)
.......+.+++. |.+|+.+|.++- .-++..+..||....--.+..|||
T Consensus 200 ~s~~aF~r~~~~a-------G~~~~~~Pi~S~-~~~E~E~~~~g~~~~~Gh~~~~~Y 248 (363)
T PF13433_consen 200 DSNVAFYRAYAAA-------GLDPERIPIASL-STSEAELAAMGAEAAAGHYTSAPY 248 (363)
T ss_dssp TCHHHHHHHHHHH-------H-SSS---EEES-S--HHHHTTS-HHHHTT-EEEES-
T ss_pred CcHHHHHHHHHHc-------CCCcccCeEEEE-ecCHHHHhhcChhhcCCcEEeehh
Confidence 5566888888876 355555554442 233345556655333333444443
No 123
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=80.67 E-value=18 Score=30.40 Aligned_cols=72 Identities=21% Similarity=0.176 Sum_probs=46.7
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe--CCCCChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA--DQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v--~~~~~~~~~~~~a~~~~~~~ 150 (251)
+++.+|+..++--|+++|....+.|.+++++.... .+...+.++..|.+++.+ +-. +.++..+..++..++.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~~ 81 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFITADLI-QQKDIDSIVSQAVEVM 81 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEEeCCC-CHHHHHHHHHHHHHHc
Confidence 35568888889999999999999999987764332 233345566677776544 432 4445555555554443
No 124
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=80.44 E-value=53 Score=31.09 Aligned_cols=123 Identities=13% Similarity=0.133 Sum_probs=71.8
Q ss_pred HHHHHHHHCCCcEEEEe-----------cCCCcHHHHHHHHHcCCEEEEeCCCC---Ch-HHHHHHHHHHhhcCCCeE--
Q 025563 92 GLAFIAALRGYKLIIVM-----------PSIASMERRIVLRALGAEVYLADQAG---GF-EGILRKGEEILSNTPNGF-- 154 (251)
Q Consensus 92 alA~~a~~~G~~~~ivv-----------p~~~~~~~~~~~~~~Ga~v~~v~~~~---~~-~~~~~~a~~~~~~~~~~~-- 154 (251)
.+..+|+.+|.++.+.. |.-.....+......|++.+...... .| -++.+...+++++....+
T Consensus 261 ~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~ 340 (473)
T TIGR01064 261 KMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAY 340 (473)
T ss_pred HHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccch
Confidence 45667889999988754 22234455666677899998886531 12 345554444433221111
Q ss_pred ---ecCCCC-C---CchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCC
Q 025563 155 ---MFRQFE-N---PANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTES 221 (251)
Q Consensus 155 ---~~~~~~-n---~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s 221 (251)
|-.+.. . ....+ .....+.++.+.+ +.++||+.+-||.++--+++ ..|.+.|+++.|...
T Consensus 341 ~~~~~~~~~~~~~~~~~~~-~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vSr----~rp~~PIiAvT~~~~ 407 (473)
T TIGR01064 341 LTNFNDRKNSDPKPSTITE-AIALSAVEAAEKL--DAKAIVVLTESGRTARLLSK----YRPNAPIIAVTPNER 407 (473)
T ss_pred hhhhhhhhcccccCCChHH-HHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHHh----hCCCCCEEEEcCCHH
Confidence 111100 0 01121 3344455666665 46899999999999655444 478899999987654
No 125
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=80.34 E-value=13 Score=33.64 Aligned_cols=61 Identities=25% Similarity=0.282 Sum_probs=46.8
Q ss_pred HHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 68 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
++.+..+.+|+. |.....|-.|+...-+|+.+|.+++.+ +.++.|++..+.+||+.+....
T Consensus 158 alk~~~~~pG~~-V~I~G~GGlGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 158 ALKKANVKPGKW-VAVVGAGGLGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINSS 218 (339)
T ss_pred ehhhcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEcC
Confidence 344455677776 777777878887788888899777776 4567899999999999888754
No 126
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=80.32 E-value=23 Score=29.81 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=45.8
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
++.+|+..+|.-|.++|....+.|.+++++ .........+.++..+.++..+..+ .+.++..+..++..++
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGI-NIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAE 82 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEe-cCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 456889999999999999999999987765 3333344556666667666554332 2344444444444443
No 127
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=80.25 E-value=25 Score=31.01 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=41.8
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHH-cCCEEEE
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRA-LGAEVYL 129 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~-~Ga~v~~ 129 (251)
...+++|++.+|...+|.-|.+++..|+.+|.++++.. .+..+.+.++. +|++-+.
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~---~~~~~~~~~~~~lGa~~vi 202 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSA---GSDEKVDLLKNKLGFDDAF 202 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHhcCCceeE
Confidence 35567788867776679999999999999999854443 23577888887 9986443
No 128
>PRK12743 oxidoreductase; Provisional
Probab=80.13 E-value=14 Score=31.15 Aligned_cols=73 Identities=12% Similarity=0.188 Sum_probs=47.4
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
++.+|+.++|.-|.++|......|.+++++...+.. ....+.++..|.+++.+..+ .+.++..+.+.+..++.
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 345888888999999999999999988776544322 23345667778776654321 24444555555555443
No 129
>PRK08703 short chain dehydrogenase; Provisional
Probab=79.98 E-value=26 Score=29.03 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=26.2
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEec
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMP 109 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp 109 (251)
++.+|+.++|..|.++|......|.+++++..
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r 38 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVAR 38 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 45688888899999999999889998766543
No 130
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=79.90 E-value=17 Score=24.92 Aligned_cols=50 Identities=28% Similarity=0.215 Sum_probs=38.4
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCC-----cH----HHHHHHHHcCCEEEEe
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-----SM----ERRIVLRALGAEVYLA 130 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-----~~----~~~~~~~~~Ga~v~~v 130 (251)
++.-++|..|.-+|.+.+.+|.+++++...+. ++ ...+.++..|.+++.-
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~ 60 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTN 60 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEES
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeC
Confidence 67788899999999999999999999985542 12 2345677778777653
No 131
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=79.29 E-value=34 Score=30.25 Aligned_cols=59 Identities=27% Similarity=0.363 Sum_probs=41.6
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~ 131 (251)
+...+.+|++.+|. .+|..|.+++..|+.+|.+.++++. .++.+.+.++.+|++.+...
T Consensus 166 ~~~~~~~g~~vlI~-g~g~vG~~a~q~a~~~G~~~v~~~~--~~~~~~~~~~~~ga~~~i~~ 224 (351)
T cd08233 166 RRSGFKPGDTALVL-GAGPIGLLTILALKAAGASKIIVSE--PSEARRELAEELGATIVLDP 224 (351)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEECC
Confidence 44456677775555 5689999999999999995555443 34667777788998765543
No 132
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=79.25 E-value=4.1 Score=32.20 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=31.5
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHH
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRA 122 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~ 122 (251)
|...++||+|.|+|...+..|.++.++.++. ...+.++.
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~ 40 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINE 40 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHH
Confidence 6778899999999999999999999998654 44444443
No 133
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=78.77 E-value=26 Score=26.57 Aligned_cols=98 Identities=10% Similarity=0.096 Sum_probs=50.5
Q ss_pred HHHHHHHCCCcEEEEecCCCcHHHHHH-HHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhh
Q 025563 93 LAFIAALRGYKLIIVMPSIASMERRIV-LRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYET 171 (251)
Q Consensus 93 lA~~a~~~G~~~~ivvp~~~~~~~~~~-~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 171 (251)
|+...+..+.+..++............ ....+.+++.=.+ +++.+++..+.+.+++.-....+-..|-|.... .+-.
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~g-~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~-~~l~ 79 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQG-GDLGERMANAFQQAARGYEPVVLIGSDCPDLTP-DDLE 79 (122)
T ss_dssp ------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE--S-SSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--H-HHHH
T ss_pred ccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecCC-CCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCH-HHHH
Confidence 345567778888888855444443333 4445566655544 489999998866663332456666677777664 3333
Q ss_pred HHHHHhhhhCCCCCEEEEecCchhH
Q 025563 172 TGPEIWKDSGGDVDILVAGIGTGGT 196 (251)
Q Consensus 172 ~~~EI~~q~~~~~d~vv~~vGtGg~ 196 (251)
+.++.+ ...|.|+.|+--||.
T Consensus 80 ---~A~~~L-~~~d~VlgPa~DGGy 100 (122)
T PF09837_consen 80 ---QAFEAL-QRHDVVLGPAEDGGY 100 (122)
T ss_dssp ---HHHHHT-TT-SEEEEEBTTSSE
T ss_pred ---HHHHHh-ccCCEEEeeccCCCE
Confidence 334444 344999999987773
No 134
>PRK08589 short chain dehydrogenase; Validated
Probab=78.75 E-value=18 Score=30.89 Aligned_cols=73 Identities=18% Similarity=0.106 Sum_probs=45.4
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE--eCCCCChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL--ADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~--v~~~~~~~~~~~~a~~~~~~~ 150 (251)
+++.+|+..++--|+++|..-...|.+++++..........+.++..+.++.. ++-. +.++..+...+..++.
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDIS-DEQQVKDFASEIKEQF 80 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecC-CHHHHHHHHHHHHHHc
Confidence 35568888889999999999889999888775442122334556666765544 4432 3344444455554443
No 135
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=78.70 E-value=24 Score=31.02 Aligned_cols=57 Identities=30% Similarity=0.458 Sum_probs=41.3
Q ss_pred HHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 69 EEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 69 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
.+...+.+|++.+|...+|..|.+++..|+.+|.+++++.+ +. +.+.++.+|++.+.
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~---~~-~~~~~~~~g~~~~~ 226 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAG---AA-KEEAVRALGADTVI 226 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeC---ch-hhHHHHhcCCeEEE
Confidence 34455667777666666699999999999999999655442 22 66777889987443
No 136
>PRK12828 short chain dehydrogenase; Provisional
Probab=78.62 E-value=22 Score=29.11 Aligned_cols=71 Identities=21% Similarity=0.107 Sum_probs=45.9
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhh
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLADQAGGFEGILRKGEEILS 148 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~ 148 (251)
+++.+|+.++|--|.+++....+.|.+++++...... ......+...+.+++.++-. +.++..+..++..+
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~ 78 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLV-DPQAARRAVDEVNR 78 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecC-CHHHHHHHHHHHHH
Confidence 3566888888999999999988889997666543221 23344566677888777654 34443333444433
No 137
>PRK08628 short chain dehydrogenase; Provisional
Probab=78.10 E-value=26 Score=29.40 Aligned_cols=72 Identities=18% Similarity=0.112 Sum_probs=44.7
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
++.+|+..+|-.|.++|..-.+.|.+++++..........+.++..|.+++.+..+ .+.++..+...++.+.
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAK 80 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 45588888899999999999999999877654432223345566667766554432 1333333334444443
No 138
>PRK08226 short chain dehydrogenase; Provisional
Probab=78.05 E-value=22 Score=29.96 Aligned_cols=72 Identities=18% Similarity=0.063 Sum_probs=43.2
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
++.+|+..+|.-|.++|......|.+++++-.........+.++..|.++..+..+ .+.++..+...+..++
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 79 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEK 79 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 45588888899999999999999998766644332222334445556665444321 2334444444444443
No 139
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=77.93 E-value=24 Score=28.14 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=54.2
Q ss_pred CCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecC---------CCcHHHHHHHHH
Q 025563 52 PCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPS---------IASMERRIVLRA 122 (251)
Q Consensus 52 ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~---------~~~~~~~~~~~~ 122 (251)
|.--+-++.....+..|.+-|. +..||.+|+|.++.-++-+... .+++++|... ...++-.+.++.
T Consensus 7 pG~eNT~~tle~a~erA~elgi----k~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGI----KHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCc----ceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 4445667888888888888876 3446777779988776655433 3888877622 245677888999
Q ss_pred cCCEEEEeCC
Q 025563 123 LGAEVYLADQ 132 (251)
Q Consensus 123 ~Ga~v~~v~~ 132 (251)
.|++|..-+.
T Consensus 82 rGa~v~~~sH 91 (186)
T COG1751 82 RGAKVLTQSH 91 (186)
T ss_pred cCceeeeehh
Confidence 9999987654
No 140
>PRK07062 short chain dehydrogenase; Provisional
Probab=77.43 E-value=32 Score=28.99 Aligned_cols=34 Identities=12% Similarity=0.188 Sum_probs=27.3
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPS 110 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~ 110 (251)
+++.+|+..+|.-|.++|......|.+++++...
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 3556888888999999999999999987766543
No 141
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=77.38 E-value=29 Score=28.81 Aligned_cols=71 Identities=20% Similarity=0.188 Sum_probs=44.6
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
++.+|+..+|.-|.++|......|.+++++... ......+.++.++.++..+..+ .+.++..+..++..++
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRS-EPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEE 77 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCc-hHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 455888888999999999999999987776543 2233445566677665544332 2344444444444443
No 142
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=77.20 E-value=13 Score=32.96 Aligned_cols=57 Identities=21% Similarity=0.158 Sum_probs=40.3
Q ss_pred HHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 69 EEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 69 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
..+..+.+|++.+|. ..|..|.+++..|+.+|.++++ +. .++.+++.++.+||+.+.
T Consensus 158 ~~~~~~~~g~~VlV~-G~g~iG~~a~~~a~~~G~~vi~-~~--~~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 158 LLRASLPPGGRLGLY-GFGGSAHLTAQVALAQGATVHV-MT--RGAAARRLALALGAASAG 214 (329)
T ss_pred HHhcCCCCCCEEEEE-cCCHHHHHHHHHHHHCCCeEEE-Ee--CChHHHHHHHHhCCceec
Confidence 344556777774444 4588899988999999987443 32 235678899999997544
No 143
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=77.02 E-value=6.2 Score=35.63 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=52.7
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcCCCe-EecC
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNTPNG-FMFR 157 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~~~~-~~~~ 157 (251)
.++..++|..+.-+|+.+..++-.-.|++|.-+.......+...|+++++++-. .++.=..+..++...+..+. +.++
T Consensus 42 ~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~h 121 (363)
T PF01041_consen 42 YAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTKAILVVH 121 (363)
T ss_dssp EEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE-
T ss_pred eEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEec
Confidence 388888899988888887433333778889988899999999999999999753 23322222333333332233 4566
Q ss_pred CCCCCchHH
Q 025563 158 QFENPANPK 166 (251)
Q Consensus 158 ~~~n~~~~~ 166 (251)
.++++....
T Consensus 122 ~~G~~~d~~ 130 (363)
T PF01041_consen 122 LFGNPADMD 130 (363)
T ss_dssp GGGB---HH
T ss_pred CCCCcccHH
Confidence 777766554
No 144
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=76.90 E-value=35 Score=30.44 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=41.3
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHH-HcCCEEEEe
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLR-ALGAEVYLA 130 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~-~~Ga~v~~v 130 (251)
.+.+.+|++.+|...+|.-|.++...|+.+|.++++.. .++.+.+.++ .+|++-+.-
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi~ 210 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAFN 210 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEEE
Confidence 35567788866666669999999999999999754432 3456777776 799965543
No 145
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=76.55 E-value=50 Score=28.98 Aligned_cols=59 Identities=27% Similarity=0.452 Sum_probs=39.3
Q ss_pred cCCCCCC--CeEEEEeccChHHHHHHHHHHHCCC-cEEEEecCCCcHHHHHHHHH-cCCEEEEeCC
Q 025563 71 KGLITPG--KSVLIETTGGNTGIGLAFIAALRGY-KLIIVMPSIASMERRIVLRA-LGAEVYLADQ 132 (251)
Q Consensus 71 ~g~~~~g--~~~vv~~ssGN~g~alA~~a~~~G~-~~~ivvp~~~~~~~~~~~~~-~Ga~v~~v~~ 132 (251)
.+.+.+| ++.+|...+|..|.++...|+.+|. ++++.. .++.+.+.++. +|++-+....
T Consensus 147 ~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~---~s~~~~~~~~~~lGa~~vi~~~ 209 (345)
T cd08293 147 KGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGIC---GSDEKCQLLKSELGFDAAINYK 209 (345)
T ss_pred hccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEc---CCHHHHHHHHHhcCCcEEEECC
Confidence 3445544 6656666669999999999999998 454443 23567777765 8986554433
No 146
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=76.48 E-value=26 Score=27.04 Aligned_cols=69 Identities=28% Similarity=0.300 Sum_probs=46.2
Q ss_pred eEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc----HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHh
Q 025563 79 SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS----MERRIVLRALGAEVYLADQA-GGFEGILRKGEEIL 147 (251)
Q Consensus 79 ~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~----~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~ 147 (251)
+.+|+..++.-|+++|..-.+.|-+.++++.++.. ...+..++..|.++..+.-+ .+.++..+..++..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVI 75 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 34788888999999999988888877777766522 22345567788888777532 23444444445554
No 147
>PLN02740 Alcohol dehydrogenase-like
Probab=76.39 E-value=33 Score=31.04 Aligned_cols=57 Identities=25% Similarity=0.234 Sum_probs=40.6
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
+...+.+|++.+| ..+|.-|.+++..|+.+|.+-++.+ +.++.+++.++.+|++.+.
T Consensus 192 ~~~~~~~g~~VlV-~G~G~vG~~a~q~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 192 NTANVQAGSSVAI-FGLGAVGLAVAEGARARGASKIIGV--DINPEKFEKGKEMGITDFI 248 (381)
T ss_pred hccCCCCCCEEEE-ECCCHHHHHHHHHHHHCCCCcEEEE--cCChHHHHHHHHcCCcEEE
Confidence 3455677777444 4579999999999999998544444 2346788888999996533
No 148
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=76.21 E-value=12 Score=35.72 Aligned_cols=53 Identities=19% Similarity=0.161 Sum_probs=42.4
Q ss_pred CCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 76 ~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
++.+ |+..+.|..|.+.+.+|+.+|-+ ++++ +..+.++++.+.+|++.+.++.
T Consensus 164 pg~k-VlViGaG~iGL~Ai~~Ak~lGA~-V~a~--D~~~~rle~aeslGA~~v~i~~ 216 (509)
T PRK09424 164 PPAK-VLVIGAGVAGLAAIGAAGSLGAI-VRAF--DTRPEVAEQVESMGAEFLELDF 216 (509)
T ss_pred CCCE-EEEECCcHHHHHHHHHHHHCCCE-EEEE--eCCHHHHHHHHHcCCeEEEecc
Confidence 4555 89999999999999999999985 3333 4567899999999999766643
No 149
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=76.10 E-value=15 Score=30.08 Aligned_cols=61 Identities=23% Similarity=0.308 Sum_probs=39.3
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~ 150 (251)
+--.|||-.|.++|..+...|..++++......+. -.+.+++.+.. .++-.+.+.+..++.
T Consensus 23 ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~s---a~em~~~~~~~~~~~ 83 (185)
T PF04127_consen 23 ITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVES---AEEMLEAVKELLPSA 83 (185)
T ss_dssp EEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-SS---HHHHHHHHHHHGGGG
T ss_pred ecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEecc---hhhhhhhhccccCcc
Confidence 44568899999999999999999999885532111 24778888874 456666666666654
No 150
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=75.93 E-value=31 Score=28.81 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=39.1
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~ 131 (251)
++.+|+..+|..|.+++......|.+++++..... .....+.++..|.++..+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVA 62 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEE
Confidence 55688888899999999999999998776654321 2234555677788876554
No 151
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=75.91 E-value=14 Score=29.33 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=34.9
Q ss_pred ChHHHHHHHHHHHCCCcEEEEecCC--CcH--HHH----HHHHHcCCEEEEeC
Q 025563 87 GNTGIGLAFIAALRGYKLIIVMPSI--ASM--ERR----IVLRALGAEVYLAD 131 (251)
Q Consensus 87 GN~g~alA~~a~~~G~~~~ivvp~~--~~~--~~~----~~~~~~Ga~v~~v~ 131 (251)
+|.++|++..++++|+.++++.|+. .+. ..+ +..+..|.++...+
T Consensus 13 ~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 13 NRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp SHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred ChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 8999999999999999999999988 444 233 23444588888874
No 152
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=75.34 E-value=37 Score=29.98 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=41.6
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
+.....+|++.+|. .+|..|.+++..|+.+|.+.++.+. .++.+++.++.+|++-+.
T Consensus 154 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~Ga~~~i 210 (347)
T PRK10309 154 HLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAID--INSEKLALAKSLGAMQTF 210 (347)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCceEe
Confidence 44455667775555 6799999999999999998655553 346777788899986443
No 153
>PRK12937 short chain dehydrogenase; Provisional
Probab=75.17 E-value=37 Score=28.03 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=46.0
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
++.+|+..+|..|.++|..-.+.|.+++++...... ....+.++..+.++..+... .+.++..+..++..++
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETA 80 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 455888888999999999999999988776543322 22344566678777665432 2334444444444443
No 154
>PRK14030 glutamate dehydrogenase; Provisional
Probab=74.83 E-value=22 Score=33.40 Aligned_cols=52 Identities=21% Similarity=0.098 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEe
Q 025563 57 KDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVM 108 (251)
Q Consensus 57 K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivv 108 (251)
=-|+..+.+..+.+.........+|+..+.||-|..+|.....+|.+++.+.
T Consensus 207 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavS 258 (445)
T PRK14030 207 TGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTIS 258 (445)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 3567788887766543333333459999999999999999999999999853
No 155
>PRK07478 short chain dehydrogenase; Provisional
Probab=74.77 E-value=25 Score=29.43 Aligned_cols=73 Identities=16% Similarity=0.036 Sum_probs=45.3
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
++.+|+..+|.-|.++|..-.+.|.+++++...... ......++..|.++..+..+ .+.++..+..++..++.
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 456888888999999999999999987766533211 12234456667666554321 24445555555555543
No 156
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=74.75 E-value=27 Score=30.02 Aligned_cols=94 Identities=11% Similarity=0.069 Sum_probs=49.1
Q ss_pred HHHHHHHHHC--CCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEe---cCCCCCCchH
Q 025563 91 IGLAFIAALR--GYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFM---FRQFENPANP 165 (251)
Q Consensus 91 ~alA~~a~~~--G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~n~~~~ 165 (251)
..+.++++.+ |.+..-+...+.-...++.....|..|.++++. .....+.++.+.+++ +.-. -++|.+ .
T Consensus 70 ~gvv~~~~~~~~~~~~~Rv~G~dl~~~ll~~~~~~~~~v~llG~~--~~v~~~a~~~l~~~y-~l~i~g~~~Gyf~---~ 143 (243)
T PRK03692 70 ISVVRSIRKKYPQAQVSRVAGADLWEALMARAGKEGTPVFLVGGK--PEVLAQTEAKLRTQW-NVNIVGSQDGYFT---P 143 (243)
T ss_pred HHHHHHHHHhcCCCCCCeeChHHHHHHHHHHHHhcCCeEEEECCC--HHHHHHHHHHHHHHh-CCEEEEEeCCCCC---H
Confidence 4566777665 434111111122234455556678899999874 233344445555555 3322 233332 2
Q ss_pred HHHHhhHHHHHhhhhC-CCCCEEEEecCchh
Q 025563 166 KIHYETTGPEIWKDSG-GDVDILVAGIGTGG 195 (251)
Q Consensus 166 ~~g~~t~~~EI~~q~~-~~~d~vv~~vGtGg 195 (251)
+ -. .+|.+++. ..+|.|+++.|+-=
T Consensus 144 ~-e~----~~i~~~I~~s~~dil~VglG~Pk 169 (243)
T PRK03692 144 E-QR----QALFERIHASGAKIVTVAMGSPK 169 (243)
T ss_pred H-HH----HHHHHHHHhcCCCEEEEECCCcH
Confidence 2 11 23444443 35999999999765
No 157
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=74.62 E-value=8.5 Score=27.42 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=32.2
Q ss_pred HHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccc
Q 025563 175 EIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAML 224 (251)
Q Consensus 175 EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~ 224 (251)
|.+++.-...|.+|+-...|...--++-.++.+..++-|+.|++.++-.+
T Consensus 3 ~~~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~~vI 52 (84)
T PF11760_consen 3 DLLRELFRRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGRFVI 52 (84)
T ss_dssp --HHHHCCC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--EEE
T ss_pred hHHHHHHcCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCCEEE
Confidence 34445446789999999999999999999999888999999999998754
No 158
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=74.58 E-value=19 Score=30.81 Aligned_cols=12 Identities=8% Similarity=0.066 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhh
Q 025563 196 TVTGSGRFLKEK 207 (251)
Q Consensus 196 ~~~Gi~~~~~~~ 207 (251)
++..+++.++..
T Consensus 122 S~~~lak~a~~l 133 (259)
T COG0623 122 SFTALAKAARPL 133 (259)
T ss_pred hHHHHHHHHHHh
Confidence 355666666654
No 159
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.56 E-value=22 Score=30.01 Aligned_cols=71 Identities=17% Similarity=0.034 Sum_probs=39.5
Q ss_pred CeEEEEecc--ChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTG--GNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ss--GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~ 149 (251)
++.+|+..+ +.-|+++|....+.|.++++..........++.+....+..+.+|-. +.++..+..++..++
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVA-SDESIERAFATIKER 80 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhccCceeEEeCCCC-CHHHHHHHHHHHHHH
Confidence 454666666 58999999999999999776643311111222222222344555543 444444444554443
No 160
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=74.55 E-value=25 Score=28.28 Aligned_cols=71 Identities=21% Similarity=0.139 Sum_probs=46.2
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCC-----CcHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSI-----ASMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~-----~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
.+|+...|..|..+|..-...+-+-++++.+. .....++.++..|++|..+.-+ .+.++..+...++.++.
T Consensus 3 ylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRF 79 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTS
T ss_pred EEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhcc
Confidence 47777789999999999888876666666444 2345788899999999876532 24444444445554444
No 161
>PRK06348 aspartate aminotransferase; Provisional
Probab=74.39 E-value=67 Score=29.00 Aligned_cols=82 Identities=16% Similarity=0.263 Sum_probs=45.1
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC--CChHHHHHHHHHHhhcCCCeEecCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA--GGFEGILRKGEEILSNTPNGFMFRQ 158 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~--~~~~~~~~~a~~~~~~~~~~~~~~~ 158 (251)
++..+++.++..++..+-. +-.-.|+++.-.-..-...++..|++++.++.. .++.-..+..++..++....+++..
T Consensus 92 i~it~G~~~al~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~ 170 (384)
T PRK06348 92 IMATVGACHGMYLALQSIL-DPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIILNS 170 (384)
T ss_pred EEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeC
Confidence 7777777877766655432 222345556554455666778889999888631 1221112223333333446677653
Q ss_pred CCCCc
Q 025563 159 FENPA 163 (251)
Q Consensus 159 ~~n~~ 163 (251)
.+||.
T Consensus 171 p~NPt 175 (384)
T PRK06348 171 PNNPT 175 (384)
T ss_pred CCCCC
Confidence 34443
No 162
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=74.04 E-value=41 Score=27.63 Aligned_cols=71 Identities=20% Similarity=0.194 Sum_probs=43.9
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILS 148 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~ 148 (251)
++.+|+.++|..|.+++....+.|.+++++...... ......++..+.++..+... .+.+...+..++..+
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKA 79 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 455888888999999999988889987666644322 22334455567777666432 233333333444443
No 163
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.00 E-value=42 Score=27.80 Aligned_cols=72 Identities=21% Similarity=0.246 Sum_probs=45.5
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
++.+|+..+|.-|++++..-...|.++++...++.. ....+.++..|.++..+..+ .+.++..+..++..+.
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEE 79 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456888888999999999999999988765443322 23345566778877665432 2333434444444443
No 164
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.78 E-value=49 Score=27.70 Aligned_cols=69 Identities=19% Similarity=0.145 Sum_probs=45.5
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~ 149 (251)
++.+|+..+|--|.++|..-...|.++++..... ....+.++..+...+.++-. +.++..+...+..++
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~ 76 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSA--ENEAKELREKGVFTIKCDVG-NRDQVKKSKEVVEKE 76 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHhCCCeEEEecCC-CHHHHHHHHHHHHHH
Confidence 4568888889999999999999999877654332 33444555556666666654 445555555555443
No 165
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=73.78 E-value=40 Score=29.15 Aligned_cols=56 Identities=29% Similarity=0.367 Sum_probs=38.8
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
+...+.+|.+.+|...+|..|.+++..|+.+|.+.++.... .++.+.++.+|++-+
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~~ 188 (324)
T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRR---DAGVAELRALGIGPV 188 (324)
T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHhcCCCEE
Confidence 34456677775665666999999999999999986665433 345556666787543
No 166
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=73.75 E-value=8.9 Score=36.91 Aligned_cols=55 Identities=24% Similarity=0.265 Sum_probs=41.5
Q ss_pred CCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCC------------------CcHHHHHHHHHcCCEEEEe
Q 025563 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSI------------------ASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 75 ~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~------------------~~~~~~~~~~~~Ga~v~~v 130 (251)
..|+. |+.-++|-.|.+.|..+++.|.+++++=... ....+++.++.+|++++.-
T Consensus 135 ~~g~~-V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 135 DTGKR-VAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLG 207 (564)
T ss_pred CCCCE-EEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 34565 8999999999999999999999977763211 2345677788999987653
No 167
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=73.74 E-value=30 Score=31.15 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=41.0
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
+...+++|++.+|. .+|.-|.+.+..|+.+|.+-++.+ +.++.+++.++.+|++-+.
T Consensus 179 ~~~~~~~g~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~--~~~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 179 NTAKVEEGDTVAVF-GLGGIGLSVIQGARMAKASRIIAI--DINPAKFELAKKLGATDCV 235 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCCeEE
Confidence 34556677775555 679999999999999999544444 3346788888999996443
No 168
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=73.63 E-value=15 Score=34.09 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=41.3
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
+...+|++ ++..+.|.-|+.+|..++.+|.++++ + +.++.+....+.+|++++
T Consensus 197 ~~~l~Gkt-VvViG~G~IG~~va~~ak~~Ga~ViV-~--d~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAGKV-AVVAGYGDVGKGCAQSLRGQGARVIV-T--EVDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCCCE-EEEECCCHHHHHHHHHHHHCCCEEEE-E--ECChhhHHHHHhcCCEEc
Confidence 44456676 89999999999999999999997544 3 334667778888998664
No 169
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=73.56 E-value=29 Score=31.05 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=40.0
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
...+.+|++.+|. ++|..|.+++..++.+|..-++.+.. .+.+++.++.+|++.+.
T Consensus 182 ~~~~~~g~~VlV~-G~g~vG~~a~q~ak~~G~~~vi~~~~--~~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 182 VAKVKKGSTVAIF-GLGAVGLAVAEGARIRGASRIIGVDL--NPSKFEQAKKFGVTEFV 237 (369)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEE
Confidence 3456677875555 67999999999999999854444422 35688888999986444
No 170
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=73.43 E-value=59 Score=28.53 Aligned_cols=54 Identities=26% Similarity=0.414 Sum_probs=39.4
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEE
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEV 127 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 127 (251)
...+.+|++.+| ..+|..|.+++..++..|.+.++.+... +.+.+.++.+|++-
T Consensus 163 ~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~ga~~ 216 (345)
T cd08287 163 SAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSRH--EDRQALAREFGATD 216 (345)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHcCCce
Confidence 344556777566 5589999999999999999865555433 46777788899843
No 171
>PRK08303 short chain dehydrogenase; Provisional
Probab=73.31 E-value=37 Score=29.81 Aligned_cols=73 Identities=21% Similarity=0.156 Sum_probs=45.8
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-----------cHHHHHHHHHcCCEEEEe--CCCCChHHHHHHH
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-----------SMERRIVLRALGAEVYLA--DQAGGFEGILRKG 143 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-----------~~~~~~~~~~~Ga~v~~v--~~~~~~~~~~~~a 143 (251)
+++.+|+..++--|.++|..-.+.|.+++++..... .....+.++..|.+++.+ +-. +.++..+.+
T Consensus 8 ~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~-~~~~v~~~~ 86 (305)
T PRK08303 8 GKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHL-VPEQVRALV 86 (305)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCC-CHHHHHHHH
Confidence 355678888888999999999999998777654311 122334556667666544 432 455555555
Q ss_pred HHHhhcC
Q 025563 144 EEILSNT 150 (251)
Q Consensus 144 ~~~~~~~ 150 (251)
.+..++.
T Consensus 87 ~~~~~~~ 93 (305)
T PRK08303 87 ERIDREQ 93 (305)
T ss_pred HHHHHHc
Confidence 6655544
No 172
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=73.28 E-value=47 Score=29.16 Aligned_cols=53 Identities=25% Similarity=0.343 Sum_probs=38.1
Q ss_pred CCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 73 LITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 73 ~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
.+.++++.+|.. +|..|.+++..|+.+|.+++++.+ +..+++.++.+|++-+.
T Consensus 160 ~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i 212 (333)
T cd08296 160 GAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHHYI 212 (333)
T ss_pred CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcEEe
Confidence 455667745554 899999999999999998544432 35677778889985433
No 173
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=73.27 E-value=34 Score=29.68 Aligned_cols=49 Identities=24% Similarity=0.284 Sum_probs=35.2
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
+++.+|...+|..|.+++..|+.+|.++++... ++.+.+.++.+|++-+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v 195 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTG---KADAADYLKKLGAKEV 195 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHHcCCCEE
Confidence 456456666699999999999999998544432 3456777788998443
No 174
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.93 E-value=42 Score=31.04 Aligned_cols=72 Identities=18% Similarity=0.205 Sum_probs=46.6
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhc
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~ 149 (251)
+++.+|+..+|.-|.++|....+.|.+++++......+...+.....+.+.+.++-. +.++..+...+..++
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~~ 281 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDIT-APDAPARIAEHLAER 281 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCC-CHHHHHHHHHHHHHh
Confidence 456688888899999999999999998777644332233333445567787777754 444444444444443
No 175
>PRK07454 short chain dehydrogenase; Provisional
Probab=72.76 E-value=30 Score=28.65 Aligned_cols=72 Identities=22% Similarity=0.199 Sum_probs=43.2
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
++.+|+.++|..|.+++....+.|.+++++...... ....+.++..+.++..+..+ .+.++..+..++..++
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 345788888999999999999999987776533211 12233345556565444321 2444444445555443
No 176
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=72.63 E-value=25 Score=31.52 Aligned_cols=57 Identities=19% Similarity=0.251 Sum_probs=40.7
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
+...+++|++.+|. ++|..|.+++..++.+|.+.++.+. .++.+++.++.+|++.+.
T Consensus 180 ~~~~~~~g~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~--~~~~~~~~~~~lGa~~~i 236 (368)
T cd08300 180 NTAKVEPGSTVAVF-GLGAVGLAVIQGAKAAGASRIIGID--INPDKFELAKKFGATDCV 236 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHcCCCEEE
Confidence 34556677875555 5799999999999999995444442 345677888889996543
No 177
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=72.60 E-value=38 Score=28.81 Aligned_cols=71 Identities=23% Similarity=0.200 Sum_probs=43.4
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILS 148 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~ 148 (251)
++.+|+..+|..|.++|....+.|.+++++..... .....+.++..|.++..+... .+.++..+...+..+
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 83 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILE 83 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 45588888899999999999999998777654321 122344455667776554332 233334444444433
No 178
>PRK06139 short chain dehydrogenase; Provisional
Probab=72.60 E-value=27 Score=31.17 Aligned_cols=72 Identities=25% Similarity=0.233 Sum_probs=45.1
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEe--CCCCChHHHHHHHHHHhhc
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLA--DQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v--~~~~~~~~~~~~a~~~~~~ 149 (251)
+++.+|+..+|--|+++|......|.+++++..... .....+.++..|+++..+ |-. +.++..+.+.+..+.
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~-d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVT-DADQVKALATQAASF 81 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCC-CHHHHHHHHHHHHHh
Confidence 355688888899999999999999999776654321 122344566778877544 332 344444444444443
No 179
>PRK07791 short chain dehydrogenase; Provisional
Probab=72.49 E-value=40 Score=29.10 Aligned_cols=74 Identities=18% Similarity=0.264 Sum_probs=45.9
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCC----------CcHHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHH
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSI----------ASMERRIVLRALGAEVYLADQ-AGGFEGILRKGEE 145 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~----------~~~~~~~~~~~~Ga~v~~v~~-~~~~~~~~~~a~~ 145 (251)
+++.+|+..++--|.++|....+.|.+++++.... ......+.++..|.++..+.. -.+.++..+..++
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 85 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDA 85 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHH
Confidence 35568888889999999999999999877764221 112234455566766654432 1245555555555
Q ss_pred HhhcC
Q 025563 146 ILSNT 150 (251)
Q Consensus 146 ~~~~~ 150 (251)
..++.
T Consensus 86 ~~~~~ 90 (286)
T PRK07791 86 AVETF 90 (286)
T ss_pred HHHhc
Confidence 55544
No 180
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=72.25 E-value=46 Score=29.16 Aligned_cols=54 Identities=26% Similarity=0.372 Sum_probs=38.5
Q ss_pred CCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 73 LITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 73 ~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
.+.++...+|...++..|.+++..|+.+|.++++..+. +.+.+.++.+|++-+.
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~v~ 215 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVG---DEKLELAKELGADAFV 215 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHcCCcEEE
Confidence 45667776666666779999999999999976555333 3566666778875443
No 181
>PRK06483 dihydromonapterin reductase; Provisional
Probab=72.16 E-value=49 Score=27.26 Aligned_cols=69 Identities=25% Similarity=0.299 Sum_probs=45.5
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~ 149 (251)
++.+|+..+|--|.++|......|.+++++-... ....+.++..|++.+.++-. +.++..+...+..++
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~~ 71 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQPVIVSYRTH--YPAIDGLRQAGAQCIQADFS-TNAGIMAFIDELKQH 71 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc--hhHHHHHHHcCCEEEEcCCC-CHHHHHHHHHHHHhh
Confidence 3458888889999999999888999887765332 22345556678777777654 344444444444443
No 182
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=72.09 E-value=36 Score=28.50 Aligned_cols=70 Identities=14% Similarity=0.083 Sum_probs=42.3
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLADQA-GGFEGILRKGEEIL 147 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~ 147 (251)
++.+|+.++|..|.++|......|.+++++...... ....+.++..|.++..+..+ .+.++..+...+..
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFE 82 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHH
Confidence 456888888999999999999899987665432211 12344556667776655332 23344444444443
No 183
>PRK05876 short chain dehydrogenase; Provisional
Probab=72.04 E-value=32 Score=29.49 Aligned_cols=73 Identities=18% Similarity=0.119 Sum_probs=43.9
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
+++.+|+..+|--|.++|..-.+.|.+++++..... .....+.++..|.++..+..+ .+.++..+...+..++
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 345688888899999999999999998666542211 122234455667766544321 2444444444554444
No 184
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=71.93 E-value=59 Score=27.33 Aligned_cols=94 Identities=14% Similarity=0.069 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHH
Q 025563 60 IALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGI 139 (251)
Q Consensus 60 ~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~ 139 (251)
-+..+.....+.|. ...=|+.++--...++...++.++ ++.|=.-.-.+++..++....||+.+..++.. .+.
T Consensus 26 ~a~~~a~Ali~gGi----~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~--~ev 98 (211)
T COG0800 26 EALPLAKALIEGGI----PAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGLN--PEV 98 (211)
T ss_pred HHHHHHHHHHHcCC----CeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCCC--HHH
Confidence 34555555566664 233466777778888888899988 55554444558899999999999999998741 233
Q ss_pred HHHHHHHhhcCCCeEecCCCCCCchH
Q 025563 140 LRKGEEILSNTPNGFMFRQFENPANP 165 (251)
Q Consensus 140 ~~~a~~~~~~~~~~~~~~~~~n~~~~ 165 (251)
.+ .+.++ +..+++...+|.-+
T Consensus 99 ~~----~a~~~-~ip~~PG~~TptEi 119 (211)
T COG0800 99 AK----AANRY-GIPYIPGVATPTEI 119 (211)
T ss_pred HH----HHHhC-CCcccCCCCCHHHH
Confidence 33 33444 66777666555444
No 185
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.89 E-value=42 Score=29.57 Aligned_cols=72 Identities=33% Similarity=0.380 Sum_probs=49.7
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHH-HHHHHcCC-E-EEEe--CCCCChHHHHHHHHHHhhcC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERR-IVLRALGA-E-VYLA--DQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~-~~~~~~Ga-~-v~~v--~~~~~~~~~~~~a~~~~~~~ 150 (251)
+..+|+..|+--|.++|+--.+.|.+.++++......+++ +.++..++ + ++.+ |-+ +.+++.+...+..++.
T Consensus 13 kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs-~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 13 KVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVS-DEESVKKFVEWAIRHF 89 (282)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccC-CHHHHHHHHHHHHHhc
Confidence 5568888888899999999999999999999776666666 66766654 3 4443 333 4555555554444444
No 186
>PRK06194 hypothetical protein; Provisional
Probab=71.84 E-value=43 Score=28.54 Aligned_cols=72 Identities=24% Similarity=0.216 Sum_probs=43.7
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
++.+|+..+|.-|.++|....+.|.+++++-.... .......+...|.+++.+..+ .+.++..+...+..++
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45588888899999999999999998766543221 122334455557777655432 2344444444444333
No 187
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=71.77 E-value=31 Score=30.91 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=40.6
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
+.+.+.+|++.+|. ++|..|.+++..++.+|..-++.+.. .+.+++.++.+|++-+
T Consensus 178 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~ 233 (365)
T cd08277 178 NTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDF 233 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcE
Confidence 44556778875555 67999999999999999854444432 4678888888998543
No 188
>PRK06114 short chain dehydrogenase; Provisional
Probab=71.52 E-value=56 Score=27.32 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=44.1
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhh
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILS 148 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~ 148 (251)
+++.+|+.++|--|.++|..-...|.++++....... ....+.++..|.++..+... .+.++..+...+..+
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 82 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEA 82 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 3556888888999999999999999988776543321 23345566667666544321 233333333444443
No 189
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=71.45 E-value=35 Score=28.28 Aligned_cols=71 Identities=11% Similarity=0.170 Sum_probs=44.5
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC--cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA--SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILS 148 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~ 148 (251)
++.+|+..+|.-|.++|....+.|.+++++..... ....++.++..|.+++....+ .+.++..+...+..+
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKA 77 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 45588888999999999999999998776553322 122345556678777654321 244444444444443
No 190
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=70.85 E-value=18 Score=30.14 Aligned_cols=65 Identities=18% Similarity=0.143 Sum_probs=41.3
Q ss_pred ccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcC
Q 025563 85 TGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 85 ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~ 150 (251)
+++.-|+++|....+.|.++++.-..... ....+..+.+|.+++.++-. +.++..+...+..+..
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~-~~~~v~~~~~~~~~~~ 70 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLS-DEESVEALFDEAVERF 70 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTT-SHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCc-chHHHHHHHHHHHhhc
Confidence 45678899999989999987777544322 12334456678888777764 4444444445554443
No 191
>PRK08862 short chain dehydrogenase; Provisional
Probab=70.65 E-value=35 Score=28.44 Aligned_cols=71 Identities=21% Similarity=0.163 Sum_probs=44.1
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEe--CCCCChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLA--DQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v--~~~~~~~~~~~~a~~~~~~ 149 (251)
+..+|+..++.-|+++|....+.|.+++++-..... ....+.++..|.+++.+ +-. +.++..+...+..++
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDF-SQESIRHLFDAIEQQ 79 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCC-CHHHHHHHHHHHHHH
Confidence 455788888889999999999999987665432211 22344566667776544 332 444444445555444
No 192
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=70.53 E-value=63 Score=28.04 Aligned_cols=54 Identities=28% Similarity=0.412 Sum_probs=38.8
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCE
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAE 126 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 126 (251)
...+.++.+.+|. .+|..|.+++..|+.+|.++++ +.......+...++.+|++
T Consensus 159 ~~~~~~g~~vlI~-g~g~~g~~~~~la~~~G~~v~~-~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 159 RSGIRPGDTVVVF-GPGPIGLLAAQVAKLQGATVVV-VGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCEEEE-ECCCCCHHHHHHHHHhCCc
Confidence 3455667776665 4799999999999999998543 3233346677788889975
No 193
>PRK06128 oxidoreductase; Provisional
Probab=70.35 E-value=54 Score=28.41 Aligned_cols=72 Identities=14% Similarity=0.057 Sum_probs=45.9
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC---cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA---SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
++.+|+..+|--|.++|..-.+.|.++++...... .....+.++..|.+++.+..+ .+.++..+...+..+.
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 45688888899999999999999998876543221 123445667778777655432 2344444444554443
No 194
>PRK05693 short chain dehydrogenase; Provisional
Probab=70.18 E-value=62 Score=27.40 Aligned_cols=66 Identities=24% Similarity=0.204 Sum_probs=44.0
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhc
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~ 149 (251)
.+|+..+|-.|.+++......|.+++++... ..+.+.+...+.+.+.++-. +.++..+...+..++
T Consensus 4 vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~ 69 (274)
T PRK05693 4 VLITGCSSGIGRALADAFKAAGYEVWATARK---AEDVEALAAAGFTAVQLDVN-DGAALARLAEELEAE 69 (274)
T ss_pred EEEecCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCeEEEeeCC-CHHHHHHHHHHHHHh
Confidence 4788888999999999999999987766433 34455556667777777654 344444444444443
No 195
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=70.17 E-value=73 Score=27.64 Aligned_cols=55 Identities=24% Similarity=0.206 Sum_probs=39.8
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
.+.+.+|.+.+|....|..|.+++..|+.+|++++.+.+ ...+.+.++.+|++-+
T Consensus 135 ~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~~~ 189 (327)
T PRK10754 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAWQV 189 (327)
T ss_pred hcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCEE
Confidence 355667777566556799999999999999998655532 3456667788887433
No 196
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=70.10 E-value=43 Score=29.04 Aligned_cols=57 Identities=32% Similarity=0.429 Sum_probs=41.0
Q ss_pred HHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 69 EEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 69 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
.+.+.+.++++.+|. .+|-.|.+++..|+.+|.++++ + ..++.+.+.++.+|+....
T Consensus 148 ~~~~~~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~-~--~~~~~~~~~~~~~g~~~~~ 204 (319)
T cd08242 148 LEQVPITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVL-V--GRHSEKLALARRLGVETVL 204 (319)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEE-E--cCCHHHHHHHHHcCCcEEe
Confidence 345666777775565 5799999999999999999443 3 2235677888888986533
No 197
>PRK06841 short chain dehydrogenase; Provisional
Probab=70.09 E-value=44 Score=27.86 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=26.4
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPS 110 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~ 110 (251)
++.+|+..+|--|.++|....+.|.+++++...
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 455788888999999999999999987665543
No 198
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=69.67 E-value=71 Score=27.29 Aligned_cols=55 Identities=25% Similarity=0.347 Sum_probs=39.4
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
+.+.+|++.+|...+|..|.++...|+..|.+++.+.+. +.+.+.++.+|++-+.
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 192 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGADEVV 192 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEEE
Confidence 445566775666666999999999999999985544332 4566777888985544
No 199
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=69.54 E-value=68 Score=28.05 Aligned_cols=53 Identities=26% Similarity=0.310 Sum_probs=37.7
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEE
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEV 127 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 127 (251)
....++++.+|. ++|..|.+++..++.+|+..++++ ...+.+...++.+|+.+
T Consensus 163 ~~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (344)
T cd08284 163 AQVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEP 215 (344)
T ss_pred cCCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeE
Confidence 344566775665 579999999999999998434444 33356777788899864
No 200
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=69.27 E-value=68 Score=28.30 Aligned_cols=56 Identities=29% Similarity=0.213 Sum_probs=40.0
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
+...+.+|++.+|. .+|..|.+++..|+.+|.+.++.+... +.+.+..+.+|++-+
T Consensus 160 ~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~g~~~~ 215 (351)
T cd08285 160 ELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGSR--PNRVELAKEYGATDI 215 (351)
T ss_pred HccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC--HHHHHHHHHcCCceE
Confidence 44456667775555 578999999999999999755554333 567778888998543
No 201
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=69.22 E-value=44 Score=27.93 Aligned_cols=72 Identities=22% Similarity=0.091 Sum_probs=43.2
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
++.+|+..+|.-|.++|....+.|.+++++...... ....+.++..+.+++.+..+ .+.++..+...+..++
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKD 83 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 456888888999999999999999887765432211 22234455556666554321 2344444444444443
No 202
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=69.05 E-value=39 Score=29.70 Aligned_cols=52 Identities=27% Similarity=0.313 Sum_probs=38.1
Q ss_pred CCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 75 ~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
.+|++.+|. .+|..|.++...|+.+|.+.++++ +.++.+.+.++.+|++-+.
T Consensus 162 ~~g~~vlV~-~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~~ 213 (341)
T PRK05396 162 LVGEDVLIT-GAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRAV 213 (341)
T ss_pred CCCCeEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEEe
Confidence 356775664 568999999999999999644444 3456778888889986544
No 203
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=68.82 E-value=81 Score=27.64 Aligned_cols=58 Identities=26% Similarity=0.359 Sum_probs=40.6
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
+...+.+|++.+|. .+|--|.+++..++.+|.+-++++. .++.+++.++.+|++.+..
T Consensus 157 ~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~~--~~~~~~~~~~~~ga~~~i~ 214 (339)
T cd08239 157 RRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIGVD--PSPERLELAKALGADFVIN 214 (339)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEEc
Confidence 33345667775555 5699999999999999998333342 3456788888999865443
No 204
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=68.62 E-value=97 Score=28.70 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=36.4
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCC-CCCeEEEEeccChHHHH--HHHHHHHCCCcEEEEe
Q 025563 49 MMEPCCSVKDRIALSMIKDAEEKGLIT-PGKSVLIETTGGNTGIG--LAFIAALRGYKLIIVM 108 (251)
Q Consensus 49 ~~~ptGS~K~R~a~~~l~~a~~~g~~~-~g~~~vv~~ssGN~g~a--lA~~a~~~G~~~~ivv 108 (251)
+.+|.|..+. ....+.....+|... .++..+|+..++..|.| +|.+. ..|..++++.
T Consensus 14 ~~hp~gc~~~--v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 14 TAHPVGCEAN--VKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCCCHHHHHH--HHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 3467776443 346666677777763 34556667766767777 55666 6788877664
No 205
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=68.59 E-value=39 Score=30.67 Aligned_cols=56 Identities=30% Similarity=0.378 Sum_probs=40.8
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
..+.+|...+|...+|..|.+++..|+.+|.+.+++. .+..+.+.++.+|+..+.-
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVID 240 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEec
Confidence 3455667756666669999999999999999865443 3456778888899876543
No 206
>PRK07806 short chain dehydrogenase; Provisional
Probab=68.29 E-value=65 Score=26.66 Aligned_cols=71 Identities=15% Similarity=0.103 Sum_probs=42.8
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILS 148 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~ 148 (251)
++.+|+..+|.-|.+++......|.+++++...... ......++..+.++..+..+ .+.++..+..++..+
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 455888888999999999998899998776543221 11233455556666554322 234444444444433
No 207
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=68.23 E-value=30 Score=25.40 Aligned_cols=95 Identities=22% Similarity=0.176 Sum_probs=54.4
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC--CCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHH
Q 025563 90 GIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ--AGGFEGILRKGEEILSNTPNGFMFRQFENPANPKI 167 (251)
Q Consensus 90 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~ 167 (251)
...+|.+.++.|+++.++=.......-.+.++....+++.++. ..++....+.++...+..|+...+-....
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~------ 90 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH------ 90 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS------
T ss_pred HHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc------
Confidence 3455666677899888763333335556778888999988864 23445666666666555555444322211
Q ss_pred HHhhHHH-HHhhhhCCCCCEEEEecCc
Q 025563 168 HYETTGP-EIWKDSGGDVDILVAGIGT 193 (251)
Q Consensus 168 g~~t~~~-EI~~q~~~~~d~vv~~vGt 193 (251)
.+..+ ++++.. ...|+++..=|-
T Consensus 91 --~t~~~~~~l~~~-~~~D~vv~GegE 114 (121)
T PF02310_consen 91 --ATADPEEILREY-PGIDYVVRGEGE 114 (121)
T ss_dssp --SGHHHHHHHHHH-HTSEEEEEETTS
T ss_pred --hhcChHHHhccC-cCcceecCCChH
Confidence 12223 344332 346888776553
No 208
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.10 E-value=36 Score=30.67 Aligned_cols=60 Identities=25% Similarity=0.381 Sum_probs=43.5
Q ss_pred HHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 69 EEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 69 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
.+.|. .||+. +.....|-.|.---.+|+.+|++++++-.. +..|.+.++.+||+...+..
T Consensus 175 k~~g~-~pG~~-vgI~GlGGLGh~aVq~AKAMG~rV~vis~~--~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 175 KRSGL-GPGKW-VGIVGLGGLGHMAVQYAKAMGMRVTVISTS--SKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred HHcCC-CCCcE-EEEecCcccchHHHHHHHHhCcEEEEEeCC--chhHHHHHHhcCcceeEEec
Confidence 34454 48877 444444448887788899999999988533 34678889999999988765
No 209
>PRK05866 short chain dehydrogenase; Provisional
Probab=68.06 E-value=45 Score=28.94 Aligned_cols=72 Identities=13% Similarity=0.082 Sum_probs=42.6
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
++.+|+..+|.-|.++|......|.+++++...... ....+.++..|.++..+..+ .+.++..+..+++.++
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKR 114 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 345888888999999999998899987776544211 12233444456655444321 2334444444444443
No 210
>PRK12744 short chain dehydrogenase; Provisional
Probab=68.02 E-value=50 Score=27.68 Aligned_cols=71 Identities=20% Similarity=0.120 Sum_probs=42.9
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCC--C---cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSI--A---SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILS 148 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~--~---~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~ 148 (251)
+..+|+..+|.-|.++|..-...|.+++++.... . .....+.++..+.++..+..+ .+.++..+...+..+
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 4558888889999999999988999977665321 1 122234455667776554321 234444444444443
No 211
>PLN02827 Alcohol dehydrogenase-like
Probab=67.88 E-value=48 Score=29.98 Aligned_cols=56 Identities=27% Similarity=0.325 Sum_probs=40.6
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
...+.+|++.+|. .+|--|.+.+..|+.+|.+.++.+.. ++.+.+.++.+|++-+.
T Consensus 188 ~~~~~~g~~VlV~-G~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~i 243 (378)
T PLN02827 188 VADVSKGSSVVIF-GLGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDFI 243 (378)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEEE
Confidence 3556677774554 56889999999999999875555432 45788888999996443
No 212
>PRK05867 short chain dehydrogenase; Provisional
Probab=67.87 E-value=41 Score=28.12 Aligned_cols=72 Identities=13% Similarity=0.095 Sum_probs=42.8
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
++.+|+.++|.-|.++|..-.+.|.+++++..... .....+.++..|.++..+..+ .+.++..+...+..++
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45688888899999999999999998766543221 122234455566666544321 2344444444444443
No 213
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=67.66 E-value=31 Score=28.96 Aligned_cols=53 Identities=23% Similarity=0.045 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCC
Q 025563 59 RIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSI 111 (251)
Q Consensus 59 R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~ 111 (251)
|+..+.++.+.+.-.......+++..+-||-|..+|......|.+.+.+.+.+
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~ 56 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPD 56 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 56666776665442222223349999999999999999999999888887543
No 214
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=67.56 E-value=41 Score=31.71 Aligned_cols=53 Identities=15% Similarity=0.062 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHcCCCC-CCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecC
Q 025563 57 KDRIALSMIKDAEEKGLIT-PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPS 110 (251)
Q Consensus 57 K~R~a~~~l~~a~~~g~~~-~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~ 110 (251)
=-+++.+.+..+++..... .|++ ++..+.||-|..+|.....+|.+++.+.+.
T Consensus 216 TG~Gv~~~~~~~l~~~~~~l~Gk~-VaVqG~GnVg~~aa~~L~e~GakVVavSD~ 269 (454)
T PTZ00079 216 TGYGLVYFVLEVLKKLNDSLEGKT-VVVSGSGNVAQYAVEKLLQLGAKVLTMSDS 269 (454)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCE-EEEECCCHHHHHHHHHHHHCCCEEEEEEcC
Confidence 3467778887776543222 3444 999999999999999999999998866543
No 215
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=67.47 E-value=44 Score=28.18 Aligned_cols=59 Identities=27% Similarity=0.317 Sum_probs=39.4
Q ss_pred HHHHHHHcCCCCCCCeEEEEe-ccC---hHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCC
Q 025563 64 MIKDAEEKGLITPGKSVLIET-TGG---NTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGA 125 (251)
Q Consensus 64 ~l~~a~~~g~~~~g~~~vv~~-ssG---N~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga 125 (251)
-+..|+..|.-. +. +|++ |.| .+-.|||.||++.|=+.+.++|+... ..-.+.|..+|.
T Consensus 31 EfISAlAAG~nA--kl-iVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 31 EFISALAAGWNA--KL-IVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred HHHHHHhccccc--eE-EEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 344466677522 23 4544 444 36899999999999999999998654 344555666664
No 216
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=67.41 E-value=73 Score=28.48 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=40.6
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
...+.++++.+|. .+|..|.+++..|+.+|.+.++.+.. ++.+...++.+|++.+..
T Consensus 181 ~~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~i~ 237 (365)
T cd08278 181 VLKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHVIN 237 (365)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEEec
Confidence 3445667775555 57999999999999999975554433 457777888899864443
No 217
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=67.40 E-value=24 Score=32.89 Aligned_cols=54 Identities=24% Similarity=0.225 Sum_probs=41.6
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCC-----CcHHHHHHHHHcCCEEEEeC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSI-----ASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~-----~~~~~~~~~~~~Ga~v~~v~ 131 (251)
|+. ++.-++||.|.-+|..+.++|.+++++.... .....++.++..|.+++.-.
T Consensus 272 gk~-VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~~ 330 (449)
T TIGR01316 272 GKS-VVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFLC 330 (449)
T ss_pred CCe-EEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecc
Confidence 455 8889999999999999999999988887542 12344566788888887543
No 218
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.28 E-value=50 Score=27.20 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=42.4
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILS 148 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~ 148 (251)
++.+|+.++|..|.+++......|.+++++...... ......++..+.+++.+..+ .+.++..+..++..+
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKN 80 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 345888888999999999988899977766543221 12234455667677554432 233333333344433
No 219
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=67.09 E-value=74 Score=26.55 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=26.2
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEec
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMP 109 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp 109 (251)
++.+|+.++|.-|.++|......|.+++++-.
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r 34 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGYRVAVADI 34 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 34588888899999999998889998766643
No 220
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=67.06 E-value=53 Score=27.06 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=37.0
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEeC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLAD 131 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v~ 131 (251)
++.+|+.++|.-|.+++....+.|.+++++...... ....+.++..+.++..+.
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 61 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQ 61 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 456888888999999999988899987766543211 233445666676665543
No 221
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=66.80 E-value=67 Score=28.16 Aligned_cols=84 Identities=14% Similarity=0.085 Sum_probs=49.8
Q ss_pred ccCCceEE--EEeCCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc
Q 025563 37 DGCVARIA--AKLEMMEPCCSVKDRIALSMIKDAEEK-GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS 113 (251)
Q Consensus 37 ~~~g~~i~--~K~E~~~ptGS~K~R~a~~~l~~a~~~-g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~ 113 (251)
+..|+.++ +++|+. ...+-.-.+...+..+++. +.--.|++ ++.-+.|+.|+++|..++.+|.+++++-+.
T Consensus 110 ~~~gi~v~~~~~~~~v--a~~n~~~~Ae~ai~~al~~~~~~l~gk~-v~IiG~G~iG~avA~~L~~~G~~V~v~~R~--- 183 (287)
T TIGR02853 110 ADAGVKLIELFERDDV--AIYNSIPTAEGAIMMAIEHTDFTIHGSN-VMVLGFGRTGMTIARTFSALGARVFVGARS--- 183 (287)
T ss_pred HHCCCeEEEEEeccce--EEEccHhHHHHHHHHHHHhcCCCCCCCE-EEEEcChHHHHHHHHHHHHCCCEEEEEeCC---
Confidence 34465554 444433 3333344556666665543 22123444 788888999999999999999976655332
Q ss_pred HHHHHHHHHcCCE
Q 025563 114 MERRIVLRALGAE 126 (251)
Q Consensus 114 ~~~~~~~~~~Ga~ 126 (251)
..+......+|.+
T Consensus 184 ~~~~~~~~~~g~~ 196 (287)
T TIGR02853 184 SADLARITEMGLI 196 (287)
T ss_pred HHHHHHHHHCCCe
Confidence 3344445556655
No 222
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=66.80 E-value=56 Score=27.04 Aligned_cols=71 Identities=21% Similarity=0.202 Sum_probs=43.6
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILS 148 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~ 148 (251)
++.+|+..+|--|.++|......|.++++....... +.....++..|.++..+..+ .+.++..+..++..+
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVN 80 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 456888888999999999988899987765433211 22234556667777665432 233333444444433
No 223
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=66.79 E-value=47 Score=28.70 Aligned_cols=50 Identities=26% Similarity=0.306 Sum_probs=37.1
Q ss_pred CCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 76 ~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
++++.+|...+|..|.+++..|+.+|.+++++.. ++++.+.++.+|++-+
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~---~~~~~~~~~~~g~~~~ 195 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTG---RPEEADYLRSLGASEI 195 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCEE
Confidence 4556566566699999999999999998655542 4467788888998543
No 224
>PRK08017 oxidoreductase; Provisional
Probab=66.70 E-value=61 Score=26.94 Aligned_cols=59 Identities=25% Similarity=0.320 Sum_probs=40.6
Q ss_pred eEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHH
Q 025563 79 SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILR 141 (251)
Q Consensus 79 ~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~ 141 (251)
+.+|+..+|.-|.+++....+.|.+++++... ..+++.++..|++.+.++-. +.++..+
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~D~~-~~~~~~~ 62 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK---PDDVARMNSLGFTGILLDLD-DPESVER 62 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHhHHHHhCCCeEEEeecC-CHHHHHH
Confidence 34778888999999999998899987665432 34555566678887777643 3443333
No 225
>PRK08278 short chain dehydrogenase; Provisional
Probab=66.50 E-value=71 Score=27.21 Aligned_cols=71 Identities=14% Similarity=0.182 Sum_probs=43.6
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--------HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--------MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILS 148 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--------~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~ 148 (251)
++.+|+..+|--|.++|....+.|.+++++...... ....+.++..|.+++.+..+ .+.++..+...+..+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 86 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAKAVE 86 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 455888888999999999999999988777644321 11234456677776555321 133333444444433
No 226
>PRK06138 short chain dehydrogenase; Provisional
Probab=66.49 E-value=63 Score=26.72 Aligned_cols=71 Identities=11% Similarity=0.196 Sum_probs=41.8
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
++.+|+..+|--|.++|....+.|.+++++...... ......++ .+.++..+..+ .+.++..+...+..++
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 78 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAAR 78 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456888888999999999888889887666533211 12223333 46665544322 2444444444444443
No 227
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=66.46 E-value=34 Score=29.60 Aligned_cols=52 Identities=12% Similarity=-0.047 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEec
Q 025563 58 DRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMP 109 (251)
Q Consensus 58 ~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp 109 (251)
-|+..+.+..+.+.........+++..+-||-|..+|.....+|.+++.+.+
T Consensus 18 g~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 18 GYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 4677777777665433333233499999999999999999999999887764
No 228
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=66.25 E-value=76 Score=26.60 Aligned_cols=72 Identities=17% Similarity=0.130 Sum_probs=45.0
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHHHHHHcCCEEEEe--CCCCChHHHHHHHHHHhhc
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRIVLRALGAEVYLA--DQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~v--~~~~~~~~~~~~a~~~~~~ 149 (251)
+++.+|+.++|.-|.++|....+.|.++++......+ ....+.++..|.++..+ +-. +.++..+...+..++
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~-~~~~i~~~~~~~~~~ 82 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVT-VESDVVNLIQTAVKE 82 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCC-CHHHHHHHHHHHHHH
Confidence 3556888888999999999999999987776553322 22344556667776544 332 334444444444443
No 229
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=66.08 E-value=45 Score=29.08 Aligned_cols=71 Identities=31% Similarity=0.332 Sum_probs=45.7
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHH-HcCCEEEE--eCCCCChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLR-ALGAEVYL--ADQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~-~~Ga~v~~--v~~~~~~~~~~~~a~~~~~~ 149 (251)
++.+|+..|+.-|.++|..-++.|.+++++...... ....+.++ .+|.+|.. +|=+ +.++..+...++.++
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs-~~~~~~~l~~~l~~~ 81 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLS-DPEALERLEDELKER 81 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCC-ChhHHHHHHHHHHhc
Confidence 456899999999999999999999999999865421 22222333 34555544 4433 334455555555444
No 230
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=65.84 E-value=88 Score=26.97 Aligned_cols=56 Identities=29% Similarity=0.340 Sum_probs=41.3
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
+...++.+.+|...+|..|.+++..++.+|.+.+++. .++.+.+.++.+|++.+..
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~~~~~ 191 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITT---SSEEKVDFCKKLAAIILIR 191 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCcEEEe
Confidence 4566777766666689999999999999999876543 2356777778899864443
No 231
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=65.75 E-value=69 Score=27.75 Aligned_cols=82 Identities=12% Similarity=0.119 Sum_probs=47.1
Q ss_pred EEEEeCCCCCCC-chhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-----cHHH
Q 025563 43 IAAKLEMMEPCC-SVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-----SMER 116 (251)
Q Consensus 43 i~~K~E~~~ptG-S~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-----~~~~ 116 (251)
|.+..|...-.| +|=.|. ..+.....++|. ...+++...++... ..-+..|+++..+ +... ..+.
T Consensus 2 i~ir~Da~~~iG~GHv~Rc-l~LA~~l~~~g~----~v~f~~~~~~~~~~---~~i~~~g~~v~~~-~~~~~~~~d~~~~ 72 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRC-LTLARALHAQGA----EVAFACKPLPGDLI---DLLLSAGFPVYEL-PDESSRYDDALEL 72 (279)
T ss_pred EEEEecCCccccccHHHHH-HHHHHHHHHCCC----EEEEEeCCCCHHHH---HHHHHcCCeEEEe-cCCCchhhhHHHH
Confidence 566677665555 676775 233333334553 33355554444432 2347889986665 4432 1245
Q ss_pred HHHHHHcCCEEEEeCCC
Q 025563 117 RIVLRALGAEVYLADQA 133 (251)
Q Consensus 117 ~~~~~~~Ga~v~~v~~~ 133 (251)
.+.++..+.+++.++.-
T Consensus 73 ~~~l~~~~~d~vV~D~y 89 (279)
T TIGR03590 73 INLLEEEKFDILIVDHY 89 (279)
T ss_pred HHHHHhcCCCEEEEcCC
Confidence 67778888999999864
No 232
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=65.44 E-value=59 Score=27.79 Aligned_cols=72 Identities=21% Similarity=0.150 Sum_probs=41.1
Q ss_pred CeEEEEeccC--hHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHH-HHcCCEE-EEeCCCCChHHHHHHHHHHhhcC
Q 025563 78 KSVLIETTGG--NTGIGLAFIAALRGYKLIIVMPSIASMERRIVL-RALGAEV-YLADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 78 ~~~vv~~ssG--N~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~-~~~Ga~v-~~v~~~~~~~~~~~~a~~~~~~~ 150 (251)
+..+|+..++ .-|+++|....+.|.+++++-.......+++.+ +..|..+ +.++-. +.++..+..++..++.
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~-d~~~v~~~~~~~~~~~ 83 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVE-DIASVDAVFEALEKKW 83 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCC-CHHHHHHHHHHHHHHh
Confidence 4546666665 789999999999999887764322112233333 3346433 344443 4455555555555443
No 233
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=65.42 E-value=54 Score=31.68 Aligned_cols=49 Identities=24% Similarity=0.182 Sum_probs=32.1
Q ss_pred eEEEEeccChHHH---HHHHHHHHCCCcEEEEecCCCcHH----HHHHHHHcCCEE
Q 025563 79 SVLIETTGGNTGI---GLAFIAALRGYKLIIVMPSIASME----RRIVLRALGAEV 127 (251)
Q Consensus 79 ~~vv~~ssGN~g~---alA~~a~~~G~~~~ivvp~~~~~~----~~~~~~~~Ga~v 127 (251)
..+|.++.||.|. ++|......|+++.|+.+...... ..++++..|..+
T Consensus 137 ~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 137 RVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 4577777788754 445555567999999987643322 345677777654
No 234
>PRK06949 short chain dehydrogenase; Provisional
Probab=65.35 E-value=54 Score=27.31 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=41.2
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEE--EEeCCCCChHHHHHHHHHHhh
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEV--YLADQAGGFEGILRKGEEILS 148 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v--~~v~~~~~~~~~~~~a~~~~~ 148 (251)
+++.+|+..+|.-|.+++....+.|.+++++...... +.....++..+.++ +.++-. +.++..+...++.+
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~ 82 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVT-DYQSIKAAVAHAET 82 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCC-CHHHHHHHHHHHHH
Confidence 3566888888999999999999999986666543211 11222334444444 444433 33444444444433
No 235
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=65.25 E-value=25 Score=29.31 Aligned_cols=57 Identities=25% Similarity=0.313 Sum_probs=31.1
Q ss_pred CCCchHHHHHhhHHHHHh----hhhC------CCCCEEEEecC-chhHHHHHHH----HHHhhCCCcEEEEE
Q 025563 160 ENPANPKIHYETTGPEIW----KDSG------GDVDILVAGIG-TGGTVTGSGR----FLKEKNPNIKVYGV 216 (251)
Q Consensus 160 ~n~~~~~~g~~t~~~EI~----~q~~------~~~d~vv~~vG-tGg~~~Gi~~----~~~~~~~~~~vigV 216 (251)
+...++..||.+.+.++. ++++ ...|.|++..| +|||-+|++. .+++..|+..++.+
T Consensus 90 g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~ 161 (216)
T PF00091_consen 90 GSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISF 161 (216)
T ss_dssp TSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEE
T ss_pred cccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceeec
Confidence 444456568886544433 2221 35777777665 4555556554 44555666555443
No 236
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=65.22 E-value=29 Score=31.35 Aligned_cols=54 Identities=33% Similarity=0.394 Sum_probs=40.1
Q ss_pred CCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 73 LITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 73 ~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
.+.++.+.+|...+|..|.+++..++.+|.+.+++. .++.+.+.++.+|++.+.
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~---~s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVV---SSEEKAEYCRALGAEGVI 243 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 455667755555569999999999999999866543 356788888889986543
No 237
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=65.05 E-value=61 Score=28.48 Aligned_cols=52 Identities=27% Similarity=0.280 Sum_probs=38.1
Q ss_pred CCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 74 ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 74 ~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
..+|++.+|. .+|-.|.+++..++.+|.+.++++ +.++.+.+.++.+|++.+
T Consensus 159 ~~~g~~vlI~-~~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~ 210 (340)
T TIGR00692 159 PISGKSVLVT-GAGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATYV 210 (340)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcEE
Confidence 4456775665 468899999999999999855555 335778888888998543
No 238
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=65.03 E-value=7.7 Score=36.52 Aligned_cols=62 Identities=23% Similarity=0.191 Sum_probs=0.0
Q ss_pred CEEEEecCchhHHHHHHHHHHhh----------------CC------CcEEEEEeCCCCccccCCCCCceeecc-----c
Q 025563 185 DILVAGIGTGGTVTGSGRFLKEK----------------NP------NIKVYGVEPTESAMLNGGQPGRLLFFL-----F 237 (251)
Q Consensus 185 d~vv~~vGtGg~~~Gi~~~~~~~----------------~~------~~~vigVep~~s~~~~~~~~~~~~i~g-----~ 237 (251)
+.||+.+|+|++.----.++.+. +| +.||+|+++.|+|+|+-.---++.|.| +
T Consensus 234 ~FVfvGAGG~aL~LLqksgi~e~~gyggfPVsG~fl~~~n~~vv~~H~aKVYgka~vGaPPmSvPHlDtRiidGk~~llF 313 (488)
T PF06039_consen 234 KFVFVGAGGGALPLLQKSGIPEGKGYGGFPVSGQFLRCKNPEVVAQHNAKVYGKASVGAPPMSVPHLDTRIIDGKKSLLF 313 (488)
T ss_pred CEEEECCchHhHHHHHHcCChhhcccCCCcccceEEecCCHHHHHHhcceeeeeCCCCCCCccCccCCchhcCCCcceee
Q ss_pred CC--ccccccc
Q 025563 238 FL--FFFCFFF 246 (251)
Q Consensus 238 g~--~~~~~~~ 246 (251)
|. ||.|.++
T Consensus 314 GP~Agfs~KfL 324 (488)
T PF06039_consen 314 GPFAGFSPKFL 324 (488)
T ss_pred cCccccchHHh
No 239
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=65.03 E-value=88 Score=26.70 Aligned_cols=57 Identities=28% Similarity=0.399 Sum_probs=38.9
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
+...+.++...+|. .+|-.|.+++..|+.+|.+.++++.. .+.+.+.++.+|++-+.
T Consensus 123 ~~~~~~~~~~vlI~-g~g~vg~~~~~la~~~g~~~v~~~~~--~~~~~~~~~~~g~~~~~ 179 (312)
T cd08269 123 RRGWIRAGKTVAVI-GAGFIGLLFLQLAAAAGARRVIAIDR--RPARLALARELGATEVV 179 (312)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCceEe
Confidence 34555667775666 46889999999999999983333332 24566677888885433
No 240
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=64.94 E-value=76 Score=27.26 Aligned_cols=54 Identities=31% Similarity=0.357 Sum_probs=37.9
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEE
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEV 127 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 127 (251)
.+...+|.+.+|...+|..|.+++..|+.+|.+.++..+. ..+.+.++.+|++-
T Consensus 133 ~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 186 (323)
T cd05282 133 YLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRR---DEQVEELKALGADE 186 (323)
T ss_pred hccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---hHHHHHHHhcCCCE
Confidence 3445667775666666889999999999999987655433 34566667788743
No 241
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=64.91 E-value=1e+02 Score=27.33 Aligned_cols=54 Identities=30% Similarity=0.456 Sum_probs=37.6
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
+...+|++.+|. .+|..|.+++..|+.+|.+.++++. .++.+...++.+|++-+
T Consensus 173 ~~~~~g~~vlI~-g~g~vG~~~~~lak~~G~~~v~~~~--~~~~~~~~~~~~g~~~v 226 (361)
T cd08231 173 GPVGAGDTVVVQ-GAGPLGLYAVAAAKLAGARRVIVID--GSPERLELAREFGADAT 226 (361)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCCeE
Confidence 444466775665 5799999999999999994333332 24567777888998543
No 242
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.74 E-value=78 Score=26.26 Aligned_cols=71 Identities=21% Similarity=0.211 Sum_probs=43.5
Q ss_pred eEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 79 SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 79 ~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
+.+|+..+|.-|.++|..-...|.+++++...... ....+.++..+.++..+... .+.++..+..+++.++
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAA 77 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 35888888999999999988899987776543221 23344555566666554321 1334444444445443
No 243
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=64.67 E-value=57 Score=27.21 Aligned_cols=72 Identities=21% Similarity=0.177 Sum_probs=43.7
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEe--CCCCChHHHHHHHHHHhhc
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLA--DQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v--~~~~~~~~~~~~a~~~~~~ 149 (251)
+++.+|+..+|.-|.++|....+.|.+++++...... ......++..|.++..+ +-. +.++..+..++..++
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIA-DEEAVAAAFARIDAE 85 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCC-CHHHHHHHHHHHHHh
Confidence 4566888888999999999888899987776543211 22334455567555444 332 334444444444443
No 244
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.50 E-value=78 Score=26.72 Aligned_cols=72 Identities=21% Similarity=0.129 Sum_probs=41.1
Q ss_pred CeEEEEecc--ChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHH-Hc-CCEE--EEeCCCCChHHHHHHHHHHhhcC
Q 025563 78 KSVLIETTG--GNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLR-AL-GAEV--YLADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 78 ~~~vv~~ss--GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~-~~-Ga~v--~~v~~~~~~~~~~~~a~~~~~~~ 150 (251)
++.+|+.++ +.-|.++|..-.+.|.++++.-.......+++.+. .. +.++ +.+|-. +.++..+..++..++.
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVT-SDEEITACFETIKEEV 85 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCC-CHHHHHHHHHHHHHhC
Confidence 454666654 68999999999999998776543222233333332 22 4444 444443 4455555555555544
No 245
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=64.46 E-value=61 Score=26.98 Aligned_cols=65 Identities=23% Similarity=0.212 Sum_probs=39.1
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHH-HHcCCEEEEe--CCCCChHHHHHHHHHHhh
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVL-RALGAEVYLA--DQAGGFEGILRKGEEILS 148 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~-~~~Ga~v~~v--~~~~~~~~~~~~a~~~~~ 148 (251)
.+|+..+|..|.++|......|.+++++... +.+++.+ ...+.++..+ +-. +.++..+...++.+
T Consensus 3 vlItGasg~iG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~Dl~-~~~~i~~~~~~~~~ 70 (248)
T PRK10538 3 VLVTGATAGFGECITRRFIQQGHKVIATGRR---QERLQELKDELGDNLYIAQLDVR-NRAAIEEMLASLPA 70 (248)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhccceEEEEecCC-CHHHHHHHHHHHHH
Confidence 4788888999999999999999987666432 2333332 2245555444 432 44444444444443
No 246
>PRK08177 short chain dehydrogenase; Provisional
Probab=64.44 E-value=78 Score=25.88 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=39.3
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHh
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEIL 147 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~ 147 (251)
.+|+..+|.-|.++|..-.+.|.+++++.........++.+ -+.++..++-. +.++..+...++.
T Consensus 4 vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~D~~-d~~~~~~~~~~~~ 68 (225)
T PRK08177 4 ALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQAL--PGVHIEKLDMN-DPASLDQLLQRLQ 68 (225)
T ss_pred EEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhc--cccceEEcCCC-CHHHHHHHHHHhh
Confidence 47888889999999999989999877765443333222222 24445555432 4444444444443
No 247
>PRK07326 short chain dehydrogenase; Provisional
Probab=64.38 E-value=70 Score=26.20 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=26.3
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEec
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMP 109 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp 109 (251)
.+.+|+..+|..|.+++......|.+++++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 45588888899999999999888998766653
No 248
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=64.03 E-value=58 Score=26.91 Aligned_cols=71 Identities=14% Similarity=0.062 Sum_probs=42.2
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILS 148 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~ 148 (251)
++.+|+..+|.-|.+++..-.+.|.+++++...... ......++..+.++..+..+ .+.++..+..+++.+
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 76 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQ 76 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 455888888999999999999999987776533211 12233345556555544432 133444444444433
No 249
>PRK07677 short chain dehydrogenase; Provisional
Probab=63.79 E-value=64 Score=26.90 Aligned_cols=70 Identities=20% Similarity=0.204 Sum_probs=41.2
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEe--CCCCChHHHHHHHHHHhh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLA--DQAGGFEGILRKGEEILS 148 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v--~~~~~~~~~~~~a~~~~~ 148 (251)
++.+|+..+|.-|.++|....+.|.+++++...... ......++..+.+++.+ +-. +.++..+...+..+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~ 74 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVR-NPEDVQKMVEQIDE 74 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCC-CHHHHHHHHHHHHH
Confidence 345888888999999999999999976665433211 12233345456565544 432 33444444444443
No 250
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=63.79 E-value=89 Score=26.29 Aligned_cols=73 Identities=19% Similarity=0.101 Sum_probs=44.3
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
+++.+|+..+|.-|.++|......|.+++++...... ......++..|.+++.+..+ .+.++..+...+..++
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3456888888999999999999999987766322211 22334455667776554332 2344444444444443
No 251
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=63.74 E-value=62 Score=27.05 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=26.5
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEec
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMP 109 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp 109 (251)
++.+|+.++|--|.++|....+.|.+++++..
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r 38 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADI 38 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcC
Confidence 45588888899999999999999998776643
No 252
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=63.71 E-value=64 Score=27.09 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=41.3
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHH-HHcCCEE--EEeCCCCChHHHHHHHHHHhhcC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVL-RALGAEV--YLADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~-~~~Ga~v--~~v~~~~~~~~~~~~a~~~~~~~ 150 (251)
++.+|+..+|--|.++|......|.+++++... ..+.+.+ +.++.++ +.++-. +.++..+...+..++.
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~~~ 78 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERS---AEKLASLRQRFGDHVLVVEGDVT-SYADNQRAVDQTVDAF 78 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCcceEEEccCC-CHHHHHHHHHHHHHhc
Confidence 456888888999999999999999987665432 2333333 2334444 334432 4444545555554443
No 253
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=63.68 E-value=85 Score=27.97 Aligned_cols=56 Identities=21% Similarity=0.215 Sum_probs=40.5
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcH--HHHHHH----HHcCCEEEEeCC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASM--ERRIVL----RALGAEVYLADQ 132 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~~----~~~Ga~v~~v~~ 132 (251)
|.+.+....+.|-+.++-.+|+++|+.+.+..|+...+ .-++.+ +..|+++..+..
T Consensus 153 g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 153 GLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred CcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecC
Confidence 45545555568899999999999999999999997532 333333 344888888764
No 254
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=63.67 E-value=33 Score=32.87 Aligned_cols=50 Identities=18% Similarity=0.121 Sum_probs=40.1
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
.++.-+.|..|.+.+..++.+|..++++ +....++++.+.+|++.+.++.
T Consensus 166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~---d~~~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 166 KVLVIGAGVAGLAAIGAANSLGAIVRAF---DTRPEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEeccc
Confidence 3777888999999999999999874444 3345678889999999988764
No 255
>PRK07904 short chain dehydrogenase; Provisional
Probab=63.53 E-value=89 Score=26.31 Aligned_cols=69 Identities=10% Similarity=0.081 Sum_probs=40.9
Q ss_pred CeEEEEeccChHHHHHHHHHHHCC-CcEEEEecCCCc--HHHHHHHHHcCC-EE--EEeCCCCChHHHHHHHHHHh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRG-YKLIIVMPSIAS--MERRIVLRALGA-EV--YLADQAGGFEGILRKGEEIL 147 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G-~~~~ivvp~~~~--~~~~~~~~~~Ga-~v--~~v~~~~~~~~~~~~a~~~~ 147 (251)
++.+|+..+|-.|.++|....+.| .+++++...... ....+.++..|. ++ +.++-. +.++..+..++..
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~-~~~~~~~~~~~~~ 83 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDAL-DTDSHPKVIDAAF 83 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCC-ChHHHHHHHHHHH
Confidence 455888888999999998877774 888777644322 223445555553 44 444543 3444444444443
No 256
>PRK09134 short chain dehydrogenase; Provisional
Probab=63.51 E-value=88 Score=26.15 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=37.1
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHHHHHHcCCEEEEeC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRIVLRALGAEVYLAD 131 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~v~ 131 (251)
++.+|+..+|.-|.+++....+.|.+++++...+.. ......++..|.++..+.
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQ 65 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 456888888999999999999999988776543321 122334455577775553
No 257
>PRK06172 short chain dehydrogenase; Provisional
Probab=63.45 E-value=57 Score=27.16 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=37.4
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEeC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLAD 131 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v~ 131 (251)
++.+|+..+|.-|.++|....+.|.+++++...... +...+.++..+.++..+.
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVA 62 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 456888888999999999999999987776543221 223445566777665543
No 258
>PRK06198 short chain dehydrogenase; Provisional
Probab=63.43 E-value=87 Score=26.08 Aligned_cols=71 Identities=21% Similarity=0.162 Sum_probs=42.7
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILS 148 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~ 148 (251)
++.+|+..+|.-|..++......|.+.++++..... ......++..+.++..+..+ .+.++..+......+
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADE 80 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 455888888999999999999999984444544322 12334556678877544321 133344444444433
No 259
>PRK08265 short chain dehydrogenase; Provisional
Probab=63.42 E-value=68 Score=27.01 Aligned_cols=69 Identities=17% Similarity=0.154 Sum_probs=40.7
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe--CCCCChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA--DQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v--~~~~~~~~~~~~a~~~~~~ 149 (251)
++.+|+.++|--|+++|....+.|.+++++-... ....+..+..+.++..+ +-. +.++..+..++..++
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDA--DNGAAVAASLGERARFIATDIT-DDAAIERAVATVVAR 77 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhCCeeEEEEecCC-CHHHHHHHHHHHHHH
Confidence 4558888889999999999999999776654322 11222233446555444 332 344444444444443
No 260
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.16 E-value=83 Score=25.75 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=27.9
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPS 110 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~ 110 (251)
++.+|+.++|..|.+++....+.|.+++++...
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 456888888999999999999999988777654
No 261
>PRK12939 short chain dehydrogenase; Provisional
Probab=62.89 E-value=52 Score=27.14 Aligned_cols=54 Identities=20% Similarity=0.122 Sum_probs=35.8
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~ 131 (251)
++.+|+..+|.-|.++|....+.|.+++++..... .......++..++++..+.
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIA 62 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 45588888899999999999999998766632211 1223344556676665543
No 262
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=62.59 E-value=81 Score=27.74 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=35.2
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
+.+ +..-+.|+.|++++..++.+|.+++++-+. +.+..+.+.+|++.+
T Consensus 152 g~k-vlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 152 GSN-VLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPF 199 (296)
T ss_pred CCE-EEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCeee
Confidence 454 777777999999999999999866665332 445666777887754
No 263
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.56 E-value=76 Score=26.15 Aligned_cols=55 Identities=25% Similarity=0.178 Sum_probs=36.4
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~ 131 (251)
+++.+|+..+|.-|.++|......|.+++++..... .....+.++..|.++..+.
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYA 60 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 345578888899999999999889998666543321 1223444566677765443
No 264
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=62.55 E-value=43 Score=30.25 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=37.5
Q ss_pred CCeEEEEecc---ChHHHHHHHH-HHHCCCcEEEEecCCC--cHHHHHHHHHcCCEEEEeC
Q 025563 77 GKSVLIETTG---GNTGIGLAFI-AALRGYKLIIVMPSIA--SMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 77 g~~~vv~~ss---GN~g~alA~~-a~~~G~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~v~ 131 (251)
|.+ |+..+. +|.+++++.+ ++.+|+.++++.|+.. +...++.++..|.++..++
T Consensus 159 g~k-ia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 218 (338)
T PRK08192 159 GMH-IAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITD 218 (338)
T ss_pred CCE-EEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 444 554545 6889999976 5677999999999864 4455566666676666554
No 265
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=62.50 E-value=34 Score=27.23 Aligned_cols=50 Identities=30% Similarity=0.276 Sum_probs=40.3
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
.++..++||-|...+.++..+|.+++++ +....+++..+..++..+.++.
T Consensus 22 ~vvv~G~G~vg~gA~~~~~~lGa~v~~~---d~~~~~~~~~~~~~~~~i~~~~ 71 (168)
T PF01262_consen 22 KVVVTGAGRVGQGAAEIAKGLGAEVVVP---DERPERLRQLESLGAYFIEVDY 71 (168)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEE---ESSHHHHHHHHHTTTEESEETT
T ss_pred EEEEECCCHHHHHHHHHHhHCCCEEEec---cCCHHHHHhhhcccCceEEEcc
Confidence 4888889999999999999999987665 3456778888889998888853
No 266
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=62.39 E-value=1.1e+02 Score=26.90 Aligned_cols=52 Identities=23% Similarity=0.259 Sum_probs=36.9
Q ss_pred CCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 74 ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 74 ~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
..++...+|. .+|..|.+++..++.+|.+.++++. .+..+...++.+|++.+
T Consensus 173 ~~~~~~vlI~-g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~~~ 224 (350)
T cd08240 173 LVADEPVVII-GAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGADVV 224 (350)
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCcEE
Confidence 3355664444 6799999999999999996555553 34667777788887543
No 267
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=62.27 E-value=80 Score=25.29 Aligned_cols=120 Identities=16% Similarity=0.109 Sum_probs=72.2
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEec
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMF 156 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~ 156 (251)
|++ |..-+.|+-|+++|..++.+|++++.+-+...+.. .....+.+. . ++++..+. . +.+.+
T Consensus 36 g~t-vgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~--~----~l~ell~~-------a-Div~~ 97 (178)
T PF02826_consen 36 GKT-VGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEY--V----SLDELLAQ-------A-DIVSL 97 (178)
T ss_dssp TSE-EEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEE--S----SHHHHHHH---------SEEEE
T ss_pred CCE-EEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hccccccee--e----ehhhhcch-------h-hhhhh
Confidence 455 77788899999999999999998888876654333 233344421 1 23433322 2 44443
Q ss_pred CCCCCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHH--HHHHHHHHhhCCCcEEEEEeCCCCc
Q 025563 157 RQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTV--TGSGRFLKEKNPNIKVYGVEPTESA 222 (251)
Q Consensus 157 ~~~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~--~Gi~~~~~~~~~~~~vigVep~~s~ 222 (251)
.--.++.+ ..-+..|.+++++ ++.+++-+|=|..+ ..+..++++ .+++-.+.+....-
T Consensus 98 ~~plt~~T----~~li~~~~l~~mk--~ga~lvN~aRG~~vde~aL~~aL~~--g~i~ga~lDV~~~E 157 (178)
T PF02826_consen 98 HLPLTPET----RGLINAEFLAKMK--PGAVLVNVARGELVDEDALLDALES--GKIAGAALDVFEPE 157 (178)
T ss_dssp -SSSSTTT----TTSBSHHHHHTST--TTEEEEESSSGGGB-HHHHHHHHHT--TSEEEEEESS-SSS
T ss_pred hhcccccc----ceeeeeeeeeccc--cceEEEeccchhhhhhhHHHHHHhh--ccCceEEEECCCCC
Confidence 32122222 2345668888884 68999999999875 455666654 33566666655443
No 268
>PRK06181 short chain dehydrogenase; Provisional
Probab=62.27 E-value=73 Score=26.67 Aligned_cols=70 Identities=20% Similarity=0.174 Sum_probs=41.7
Q ss_pred eEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhh
Q 025563 79 SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILS 148 (251)
Q Consensus 79 ~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~ 148 (251)
+.+|+..+|..|.+++......|.+++++...... ....+.++..|.++..+..+ .+.+...+...+..+
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 74 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVA 74 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 34788888999999999988999987776543211 22233455567666544321 233444444444433
No 269
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.23 E-value=88 Score=25.75 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=27.1
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPS 110 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~ 110 (251)
++.+|+.++|..|.+++......|.+++++...
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 455888888999999999999999996666543
No 270
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=62.09 E-value=52 Score=29.61 Aligned_cols=52 Identities=19% Similarity=0.134 Sum_probs=33.7
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
|+..+++..+..++..+....-+-.|+++.-.-..-...++.+|++++.++.
T Consensus 94 I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 145 (374)
T PRK02610 94 ISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGR 145 (374)
T ss_pred EEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecC
Confidence 6666667777765554433322224566665555667778999999999874
No 271
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=61.99 E-value=67 Score=27.98 Aligned_cols=52 Identities=21% Similarity=0.310 Sum_probs=36.0
Q ss_pred CeEEEE-eccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 78 KSVLIE-TTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 78 ~~~vv~-~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
...++. ..+|..|.++...|+.+|.+++++. .++.+.+.++.+|++-+....
T Consensus 144 ~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~---~~~~~~~~~~~~g~~~~i~~~ 196 (324)
T cd08291 144 AKAVVHTAAASALGRMLVRLCKADGIKVINIV---RRKEQVDLLKKIGAEYVLNSS 196 (324)
T ss_pred CcEEEEccCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCcEEEECC
Confidence 343454 5778899998889999999754432 235778888889987655433
No 272
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=61.94 E-value=54 Score=29.17 Aligned_cols=82 Identities=12% Similarity=0.110 Sum_probs=41.2
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHh-hcCCCeEecCCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEIL-SNTPNGFMFRQF 159 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~ 159 (251)
|+..+++..+..++..+- +.-.-.|+++.-.-..-....+..|++++.++...++.-..+...+.. +.....+|+...
T Consensus 79 i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~~p 157 (351)
T PRK14807 79 IFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNP 157 (351)
T ss_pred EEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEeCC
Confidence 666666666655544432 222233455544334455567889999999875322211112222222 223467777543
Q ss_pred CCCc
Q 025563 160 ENPA 163 (251)
Q Consensus 160 ~n~~ 163 (251)
.||.
T Consensus 158 ~NPt 161 (351)
T PRK14807 158 NNPT 161 (351)
T ss_pred CCCC
Confidence 4443
No 273
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.93 E-value=68 Score=27.96 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=39.0
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC--cHHHHHHHHHcCCEEEEeCC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA--SMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~v~~ 132 (251)
+++.+|+..+|.-|.++|..-.+.|.++++...... .....+.++..|.+++.+..
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 69 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAG 69 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeC
Confidence 355688888899999999999889998766543221 12334567777888766643
No 274
>PLN02702 L-idonate 5-dehydrogenase
Probab=61.82 E-value=84 Score=27.97 Aligned_cols=58 Identities=26% Similarity=0.340 Sum_probs=42.1
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
+...+.++++.+|. .+|..|.++...++.+|.+.++.++. ++.+.+.++.+|+.....
T Consensus 175 ~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~~ 232 (364)
T PLN02702 175 RRANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIVL 232 (364)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEEe
Confidence 34445667775555 67899999999999999986665543 467777888899876543
No 275
>PRK05872 short chain dehydrogenase; Provisional
Probab=61.68 E-value=69 Score=27.73 Aligned_cols=70 Identities=24% Similarity=0.243 Sum_probs=42.3
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHH-HHHc--CCEEEE--eCCCCChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIV-LRAL--GAEVYL--ADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~-~~~~--Ga~v~~--v~~~~~~~~~~~~a~~~~~~~ 150 (251)
+++.+|+..+|.-|.++|......|.+++++... ..+++. .+.+ +.+++. ++-. +.++..+...+..++.
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~l~~~~~~l~~~~~~~~~~~Dv~-d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGAKLALVDLE---EAELAALAAELGGDDRVLTVVADVT-DLAAMQAAAEEAVERF 83 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhcCCCcEEEEEecCC-CHHHHHHHHHHHHHHc
Confidence 3556888888999999999999999976665432 223222 2223 455555 4433 4444555555554443
No 276
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=61.60 E-value=61 Score=28.16 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=38.2
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEV 127 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 127 (251)
+...+.++.+.+| ..+|..|.+++..++..|.+++++.+. ..+.+.++.+|++-
T Consensus 161 ~~~~~~~~~~vlV-~g~g~vg~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 214 (329)
T cd08298 161 KLAGLKPGQRLGL-YGFGASAHLALQIARYQGAEVFAFTRS---GEHQELARELGADW 214 (329)
T ss_pred HhhCCCCCCEEEE-ECCcHHHHHHHHHHHHCCCeEEEEcCC---hHHHHHHHHhCCcE
Confidence 4455666777555 467899999999999999876555433 35667777788753
No 277
>PRK07550 hypothetical protein; Provisional
Probab=61.55 E-value=1.2e+02 Score=27.20 Aligned_cols=76 Identities=18% Similarity=0.133 Sum_probs=43.0
Q ss_pred CCchhhHHHHHHHHHHHHcCC-CCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC
Q 025563 53 CCSVKDRIALSMIKDAEEKGL-ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 53 tGS~K~R~a~~~l~~a~~~g~-~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~ 131 (251)
.|.-..|.+..-.... ..|. ..+ .. |+..+++..+..++..+- .+-.-.|+++.-.-..-...++..|++++.++
T Consensus 67 ~G~~~lr~~ia~~~~~-~~g~~~~~-~~-i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 142 (386)
T PRK07550 67 EGLPELREAYAAHYSR-LYGAAISP-EQ-VHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLP 142 (386)
T ss_pred CCCHHHHHHHHHHHHH-HhCCCCCc-ce-EEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEe
Confidence 5666666443322211 2232 222 22 666666777766655443 33334567666444445566788999999987
Q ss_pred C
Q 025563 132 Q 132 (251)
Q Consensus 132 ~ 132 (251)
.
T Consensus 143 ~ 143 (386)
T PRK07550 143 C 143 (386)
T ss_pred c
Confidence 5
No 278
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=61.42 E-value=74 Score=26.38 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=42.3
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
.+|+..+|.-|.++|......|.+++++...... ....+.++..|.++..+..+ .+.++..+...+..++
T Consensus 3 ~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 74 (254)
T TIGR02415 3 ALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEK 74 (254)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4788888999999999999999987666433211 22334566667766554332 2333333444444433
No 279
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=61.42 E-value=1.1e+02 Score=27.41 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=39.4
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAE 126 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 126 (251)
+...+.+|++.+|. ++|..|.+++..|+.+|.+.++.+.. ++.+.+.++.+|++
T Consensus 177 ~~~~~~~g~~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 230 (365)
T cd05279 177 NTAKVTPGSTCAVF-GLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGAT 230 (365)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCC
Confidence 34456677775665 67999999999999999876555432 46677777889984
No 280
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=61.33 E-value=53 Score=30.76 Aligned_cols=54 Identities=22% Similarity=0.206 Sum_probs=36.9
Q ss_pred CCeEEEEecc---ChHHHHHHHHHHHC-CCcEEEEecCCC--cHHHHHHHHHcCCEEEEeC
Q 025563 77 GKSVLIETTG---GNTGIGLAFIAALR-GYKLIIVMPSIA--SMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 77 g~~~vv~~ss---GN~g~alA~~a~~~-G~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~v~ 131 (251)
|.+ |+..+. +|.+++++.+++.+ |++++++.|+.. ++..++.++..|..+...+
T Consensus 241 G~k-Ia~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 241 GAH-IALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred CCE-EEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 444 554445 69999999997665 999999999864 3444555555666665543
No 281
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=61.32 E-value=1.3e+02 Score=27.26 Aligned_cols=79 Identities=18% Similarity=0.178 Sum_probs=41.6
Q ss_pred CCCchhhHHHHHHHHHHHHcCC--CCCCCeEEEEeccChHHHHHHHHHHH-C-CCcEEEEecCCCcHHHHHHHHHcCCEE
Q 025563 52 PCCSVKDRIALSMIKDAEEKGL--ITPGKSVLIETTGGNTGIGLAFIAAL-R-GYKLIIVMPSIASMERRIVLRALGAEV 127 (251)
Q Consensus 52 ptGS~K~R~a~~~l~~a~~~g~--~~~g~~~vv~~ssGN~g~alA~~a~~-~-G~~~~ivvp~~~~~~~~~~~~~~Ga~v 127 (251)
+.|.-+.|.+..-... ...|. ..+... |+...++..+..++..+-. - |-.-.|++|.-.-..-...++..|+++
T Consensus 64 ~~G~~~lr~~ia~~~~-~~~g~~~~~~~~~-i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~ 141 (396)
T PRK09147 64 TAGLPALREAIAAWLE-RRYGLPALDPATQ-VLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEP 141 (396)
T ss_pred CCCCHHHHHHHHHHHH-HHhCCCcCCccce-EEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEE
Confidence 4566677754332221 12242 233223 6666777777665554322 2 112334555433344455678899999
Q ss_pred EEeCC
Q 025563 128 YLADQ 132 (251)
Q Consensus 128 ~~v~~ 132 (251)
+.++-
T Consensus 142 ~~vp~ 146 (396)
T PRK09147 142 YFLNC 146 (396)
T ss_pred EEecc
Confidence 99874
No 282
>PRK06701 short chain dehydrogenase; Provisional
Probab=61.30 E-value=1e+02 Score=26.65 Aligned_cols=71 Identities=20% Similarity=0.134 Sum_probs=43.7
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILS 148 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~ 148 (251)
++.+|+..+|.-|.++|....+.|.+++++...... ......++..|.++..+..+ .+.++..+..++..+
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 455888888999999999999999998776544321 23344556667776554332 133333333444433
No 283
>PRK10083 putative oxidoreductase; Provisional
Probab=61.09 E-value=1.1e+02 Score=26.75 Aligned_cols=58 Identities=21% Similarity=0.182 Sum_probs=41.0
Q ss_pred HHcCCCCCCCeEEEEeccChHHHHHHHHHHH-CCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 69 EEKGLITPGKSVLIETTGGNTGIGLAFIAAL-RGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 69 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~-~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
.+.....+|++.+|.. +|-.|.+++..|+. +|.+.++.+.. ++.+.+.++.+|++-+.
T Consensus 153 ~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 211 (339)
T PRK10083 153 TGRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWVI 211 (339)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEEe
Confidence 3445566777745544 78888888888886 69887666533 46788888899996544
No 284
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=61.07 E-value=80 Score=26.37 Aligned_cols=71 Identities=21% Similarity=0.242 Sum_probs=41.7
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILS 148 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~ 148 (251)
++.+|+..+|--|.++|......|.+++++...... +...+.++..+.+++.+..+ .+.++..+...+..+
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~ 85 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLE 85 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 455888888999999999988899987665432211 12233455567776555432 233333333444444
No 285
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=61.06 E-value=64 Score=26.53 Aligned_cols=70 Identities=16% Similarity=0.090 Sum_probs=43.0
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
+|+..+|.-|.++|....+.|.+++++...... ....+.++..+.++..+..+ .+.++..+...+..++.
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 74 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEH 74 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 677888999999999999999997766543321 23344556667776655432 23344444444444433
No 286
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=61.02 E-value=93 Score=25.74 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=43.1
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcH-HHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASM-ERRIVLRALGAEVYLADQA-GGFEGILRKGEEILS 148 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~ 148 (251)
++.+|+..+|..|.++|..-...|.+++++....... .....++..+.+++.+..+ .+.++..+...+..+
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 77 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVE 77 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4558888889999999999888899887776543222 2234455567666544322 233333343444433
No 287
>PRK12831 putative oxidoreductase; Provisional
Probab=60.99 E-value=39 Score=31.74 Aligned_cols=55 Identities=24% Similarity=0.188 Sum_probs=41.0
Q ss_pred CCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCC---C--cHHHHHHHHHcCCEEEEeC
Q 025563 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSI---A--SMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 76 ~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~---~--~~~~~~~~~~~Ga~v~~v~ 131 (251)
.++. |+.-++||.|.-+|..+.++|.+++++.... . ....++.++..|.+++.-.
T Consensus 280 ~gk~-VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~~ 339 (464)
T PRK12831 280 VGKK-VAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLT 339 (464)
T ss_pred CCCe-EEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEecc
Confidence 3455 8899999999999999999999988887543 2 2244456677888877543
No 288
>PRK06500 short chain dehydrogenase; Provisional
Probab=59.86 E-value=98 Score=25.48 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=41.1
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHH-HHHHHcCCEEEEe--CCCCChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERR-IVLRALGAEVYLA--DQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~-~~~~~~Ga~v~~v--~~~~~~~~~~~~a~~~~~~ 149 (251)
++.+|+..+|..|.+++......|.+++++... ..+. ...+..|.++..+ +-. +.++..+...+..+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~~ 77 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRD---PASLEAARAELGESALVIRADAG-DVAAQKALAQALAEA 77 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC---HHHHHHHHHHhCCceEEEEecCC-CHHHHHHHHHHHHHH
Confidence 456888888999999999999999987665332 2222 2334457666544 332 344444444444443
No 289
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=59.78 E-value=73 Score=28.59 Aligned_cols=55 Identities=29% Similarity=0.360 Sum_probs=40.0
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEV 127 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 127 (251)
+...+.+|++.+| ...|..|.+++..++.+|.+.++++ +.+..+.+.++.+|+..
T Consensus 170 ~~~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~--~~~~~~~~~~~~~g~~~ 224 (375)
T cd08282 170 ELAGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVV--DHVPERLDLAESIGAIP 224 (375)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCeE
Confidence 3444566777556 5679999999999999998544444 33567888888999854
No 290
>PLN02342 ornithine carbamoyltransferase
Probab=59.62 E-value=57 Score=29.63 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=39.6
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC--cHHHHHHHHHcCC-EEEEeC
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA--SMERRIVLRALGA-EVYLAD 131 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~~~~~Ga-~v~~v~ 131 (251)
.|.++ |.+..+..-..|.+++++.+++++|+.++++.|+.. +...++.++.+|. ++...+
T Consensus 189 ~G~l~-glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~ 251 (348)
T PLN02342 189 IGRLE-GTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITN 251 (348)
T ss_pred hCCcC-CCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEc
Confidence 45443 444333333478999999999999999999999864 3344555666664 555443
No 291
>PRK06953 short chain dehydrogenase; Provisional
Probab=59.60 E-value=95 Score=25.28 Aligned_cols=51 Identities=27% Similarity=0.297 Sum_probs=36.6
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA 133 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~ 133 (251)
.+|+..+|.-|.++|..-...|.+++++... ..+.+.++..+.+.+.++-.
T Consensus 4 vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~D~~ 54 (222)
T PRK06953 4 VLIVGASRGIGREFVRQYRADGWRVIATARD---AAALAALQALGAEALALDVA 54 (222)
T ss_pred EEEEcCCCchhHHHHHHHHhCCCEEEEEECC---HHHHHHHHhccceEEEecCC
Confidence 4788888999999999888889987776433 33445556667777666654
No 292
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=59.38 E-value=75 Score=27.57 Aligned_cols=55 Identities=24% Similarity=0.289 Sum_probs=38.5
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
..+.++.+.+|. .+|..|.+++..++.+|.+++++.+ +..+.+.++.+|++.+..
T Consensus 158 ~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~~ 212 (330)
T cd08245 158 AGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITR---SPDKRELARKLGADEVVD 212 (330)
T ss_pred hCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHhCCcEEec
Confidence 445666665665 5677999999999999998655543 345667777788765543
No 293
>PRK07035 short chain dehydrogenase; Provisional
Probab=59.30 E-value=1e+02 Score=25.54 Aligned_cols=71 Identities=17% Similarity=0.125 Sum_probs=42.9
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEe--CCCCChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLA--DQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v--~~~~~~~~~~~~a~~~~~~ 149 (251)
++.+|+..+|.-|.+++....+.|.+++++...... ....+.+...|.++..+ +-. +.++..+..++..+.
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIG-EMEQIDALFAHIRER 82 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCC-CHHHHHHHHHHHHHH
Confidence 455888888999999999999999987766543211 22334445556655444 332 344444444444443
No 294
>PRK06720 hypothetical protein; Provisional
Probab=59.27 E-value=90 Score=24.89 Aligned_cols=72 Identities=21% Similarity=0.156 Sum_probs=41.8
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcH-HHHHHHHHcCCEEEEe--CCCCChHHHHHHHHHHhhcC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASM-ERRIVLRALGAEVYLA--DQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~~~~~Ga~v~~v--~~~~~~~~~~~~a~~~~~~~ 150 (251)
+..+|+..++--|.++|......|.+++++-...... ...+.++..|.++..+ +-. +.++..+.+.+..++.
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~-~~~~v~~~v~~~~~~~ 91 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDME-KQGDWQRVISITLNAF 91 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCC-CHHHHHHHHHHHHHHc
Confidence 4557777778899999998888998866654322111 1224455556665433 332 4445555555544443
No 295
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=59.11 E-value=47 Score=29.47 Aligned_cols=60 Identities=25% Similarity=0.303 Sum_probs=39.2
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHHH-HHHcCCEEEEeC
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRIV-LRALGAEVYLAD 131 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~-~~~~Ga~v~~v~ 131 (251)
.|.++ |.+..+....+|..++++.+++++|+++.++.|+... ...++. .+..|.++...+
T Consensus 147 ~g~l~-gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 147 RGSLK-GLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred hCCcC-CcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 45443 3443333334899999999999999999999988642 233333 455677766553
No 296
>PLN00175 aminotransferase family protein; Provisional
Probab=59.05 E-value=1.5e+02 Score=27.24 Aligned_cols=82 Identities=11% Similarity=0.083 Sum_probs=43.6
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcCCCeEecCCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNTPNGFMFRQF 159 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~ 159 (251)
|+..+++..+..++..+- ++-.-.|+++.-.-..-...++..|++++.++-. .++.-..+..++........++++..
T Consensus 118 I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~p 196 (413)
T PLN00175 118 VTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINTP 196 (413)
T ss_pred EEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecCC
Confidence 666666677766655543 3322345555444455566788899999988642 11211122233333333356776544
Q ss_pred CCCc
Q 025563 160 ENPA 163 (251)
Q Consensus 160 ~n~~ 163 (251)
+||.
T Consensus 197 ~NPt 200 (413)
T PLN00175 197 HNPT 200 (413)
T ss_pred CCCC
Confidence 5554
No 297
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=58.98 E-value=75 Score=28.58 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=39.1
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAE 126 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 126 (251)
....+++|++.+|. ++|.-|.+++..++.+|.+-++++. ..+.+++.++.+|++
T Consensus 184 ~~~~~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~--~~~~~~~~a~~lGa~ 237 (373)
T cd08299 184 NTAKVTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVD--INKDKFAKAKELGAT 237 (373)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCc
Confidence 34556677774555 6799999999999999985444443 245778888889984
No 298
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=58.98 E-value=1.2e+02 Score=26.37 Aligned_cols=53 Identities=34% Similarity=0.528 Sum_probs=38.1
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAE 126 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 126 (251)
+...+.+|+..+|. .+|-.|.+++..|+.+|+++++... ++++...++.+|++
T Consensus 153 ~~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~~ 205 (337)
T cd08261 153 RRAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGAD 205 (337)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCCC
Confidence 34456677775555 5688899999999999998665532 36677777888864
No 299
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=58.90 E-value=90 Score=26.03 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=42.5
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEE--eCCCCChHHHHHHHHHHhh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYL--ADQAGGFEGILRKGEEILS 148 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~--v~~~~~~~~~~~~a~~~~~ 148 (251)
++.+|+..+|.-|.+++......|.+++++...... ......++..|.+++. ++-. +.++..+..+...+
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~-~~~~i~~~~~~~~~ 84 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDIT-SEQELSALADFALS 84 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCC-CHHHHHHHHHHHHH
Confidence 556888888999999999988999987776543221 1223445556666544 4432 33444444444444
No 300
>PRK07985 oxidoreductase; Provisional
Probab=58.82 E-value=91 Score=26.99 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=42.8
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCC-C--cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSI-A--SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~-~--~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
++.+|+..+|.-|.++|....+.|.++++..... . .....+.++..|.+++.+..+ .+.++..+..++..++
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4568888889999999999999999887653221 1 112223345567666544321 2344444444444443
No 301
>PLN02527 aspartate carbamoyltransferase
Probab=58.76 E-value=69 Score=28.47 Aligned_cols=59 Identities=20% Similarity=0.166 Sum_probs=38.3
Q ss_pred cCCCCCCCeEEEEeccC---hHHHHHHHHHHHC-CCcEEEEecCCC--cHHHHHHHHHcCCEEEEeC
Q 025563 71 KGLITPGKSVLIETTGG---NTGIGLAFIAALR-GYKLIIVMPSIA--SMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssG---N~g~alA~~a~~~-G~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~v~ 131 (251)
.|.++ |.+ |+..+.+ |.+++++.+++++ |+.++++.|+.. ++...+.++..|.++...+
T Consensus 146 ~g~l~-g~k-va~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 146 IGRLD-GIK-VGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred hCCcC-CCE-EEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 35433 344 5544443 5899999998877 999999999863 4444555555666665554
No 302
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=58.54 E-value=52 Score=25.89 Aligned_cols=47 Identities=26% Similarity=0.261 Sum_probs=36.4
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
+|...+|+.|..++....+.|.+++++++...+... ..+.+++..+-
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~~~~~~d~ 48 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGVEIIQGDL 48 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTEEEEESCT
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----ccccccceeee
Confidence 667778999999999999999999999977543333 56666666654
No 303
>PRK05717 oxidoreductase; Validated
Probab=58.52 E-value=83 Score=26.25 Aligned_cols=70 Identities=20% Similarity=0.335 Sum_probs=41.3
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe--CCCCChHHHHHHHHHHhhc
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA--DQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v--~~~~~~~~~~~~a~~~~~~ 149 (251)
|++.+|+..+|.-|.++|....+.|.+++++-... ....+..+..+.+++.+ +-. +.++..+...+..++
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~ 81 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR--ERGSKVAKALGENAWFIAMDVA-DEAQVAAGVAEVLGQ 81 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHHHcCCceEEEEccCC-CHHHHHHHHHHHHHH
Confidence 45668888889999999999999998877653221 11122234455555444 332 334444444444444
No 304
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=58.51 E-value=39 Score=30.27 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=50.7
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEe--cCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVM--PSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTP 151 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivv--p~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~ 151 (251)
|++..=|-.--++-.-=..++=+-++++ |..+++.-.++++.+|..|.+..+..-++.+.+.++.+.+++|
T Consensus 55 Vlttpwg~ynes~~~eI~~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp 127 (337)
T COG2247 55 VLTTPWGIYNESVLDEIIELNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYP 127 (337)
T ss_pred eEecCcccccHHHHHHHHhhCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhch
Confidence 4433325555555555556676666666 5567888888999999999999998667777777788877765
No 305
>PRK07890 short chain dehydrogenase; Provisional
Probab=58.35 E-value=95 Score=25.76 Aligned_cols=53 Identities=23% Similarity=0.262 Sum_probs=35.1
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEe
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLA 130 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v 130 (251)
++.+|+.++|.-|+++|......|.+++++...... +.....++..|.++..+
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 59 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAV 59 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEE
Confidence 456888888999999999999999987666432211 12233444456655444
No 306
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=58.31 E-value=82 Score=26.86 Aligned_cols=51 Identities=31% Similarity=0.463 Sum_probs=37.2
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCE
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAE 126 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 126 (251)
+.+.++...+|...+|..|.+++..++..|.+++.+.+. .+.+.++.+|+.
T Consensus 139 ~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~~ 189 (319)
T cd08267 139 GKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGAD 189 (319)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCCC
Confidence 345566775666656999999999999999986655431 566677888874
No 307
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=58.27 E-value=1e+02 Score=26.85 Aligned_cols=55 Identities=29% Similarity=0.408 Sum_probs=40.5
Q ss_pred HHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCE
Q 025563 69 EEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAE 126 (251)
Q Consensus 69 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 126 (251)
.....+.+|.+.+|. .+|-.|.++...++.+|.+.++.+.. ++.+...++.+|++
T Consensus 154 ~~~~~~~~g~~VlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 208 (341)
T cd08262 154 VRRARLTPGEVALVI-GCGPIGLAVIAALKARGVGPIVASDF--SPERRALALAMGAD 208 (341)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCc
Confidence 345556677775666 46899999999999999886665533 46777788889985
No 308
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=58.22 E-value=71 Score=28.64 Aligned_cols=55 Identities=25% Similarity=0.383 Sum_probs=36.0
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
+...+|++.+| ..+|.-|.+++..|+.+|.+++++.... ..+....+.+|++-+.
T Consensus 179 ~~~~~g~~VlV-~G~G~vG~~avq~Ak~~Ga~vi~~~~~~--~~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 179 GMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVISSSS--NKEDEAINRLGADSFL 233 (360)
T ss_pred cccCCCCEEEE-ECCCHHHHHHHHHHHHCCCEEEEEeCCc--chhhhHHHhCCCcEEE
Confidence 33456777444 6679999999999999999755443222 2334455678886443
No 309
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=58.17 E-value=74 Score=27.56 Aligned_cols=120 Identities=19% Similarity=0.158 Sum_probs=65.8
Q ss_pred HHHHHHHH-HHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHH
Q 025563 90 GIGLAFIA-ALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKI 167 (251)
Q Consensus 90 g~alA~~a-~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~ 167 (251)
|.++-+++ +.+|-+...-++... -....+.+..-|-.|.++++. -+-..+.+..+.++.|+.-++.-++.+.....
T Consensus 72 G~gvV~~ar~~~g~~~~~rv~G~Dl~~~Ll~~a~~~~~~vfllGgk--p~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e 149 (253)
T COG1922 72 GIGVVRAARRLLGQPLPERVAGTDLVEALLKRAAEEGKRVFLLGGK--PGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEE 149 (253)
T ss_pred chhHHHHHHHHhCccCcccCChHHHHHHHHHHhCccCceEEEecCC--HHHHHHHHHHHHHHCCCceEEEecCCCCChhh
Confidence 47788888 777877654444321 223334444446778888875 23344455667777775555544433333321
Q ss_pred HHhhHHHHHhhhhC-CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEe
Q 025563 168 HYETTGPEIWKDSG-GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVE 217 (251)
Q Consensus 168 g~~t~~~EI~~q~~-~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVe 217 (251)
- . .|.+.+. ..||.++|+.|.-.==-=|...... .+..=.+||-
T Consensus 150 ~-~----~i~~~I~~s~pdil~VgmG~P~QE~wi~~~~~~-~~~~v~igVG 194 (253)
T COG1922 150 E-E----AIVERIAASGPDILLVGMGVPRQEIWIARNRQQ-LPVAVAIGVG 194 (253)
T ss_pred H-H----HHHHHHHhcCCCEEEEeCCCchhHHHHHHhHHh-cCCceEEecc
Confidence 1 2 3444432 3699999999987643223333222 3444555553
No 310
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=58.08 E-value=57 Score=30.26 Aligned_cols=53 Identities=25% Similarity=0.265 Sum_probs=36.8
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
+....|++ ++..+.|+-|+.+|..++.+|.++++ +..+ +.+....+..|+++.
T Consensus 190 ~~~l~Gk~-VvViG~G~IG~~vA~~ak~~Ga~ViV-~d~d--p~r~~~A~~~G~~v~ 242 (406)
T TIGR00936 190 NLLIAGKT-VVVAGYGWCGKGIAMRARGMGARVIV-TEVD--PIRALEAAMDGFRVM 242 (406)
T ss_pred CCCCCcCE-EEEECCCHHHHHHHHHHhhCcCEEEE-EeCC--hhhHHHHHhcCCEeC
Confidence 43345665 89999999999999999999998555 3322 234444555677553
No 311
>PLN02253 xanthoxin dehydrogenase
Probab=58.03 E-value=76 Score=26.91 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=26.6
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEec
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMP 109 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp 109 (251)
++.+|+..+|.-|.++|....+.|.+++++-.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 45688888899999999999999998777643
No 312
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=57.82 E-value=1.2e+02 Score=25.79 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=39.7
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
+...+.++.+.+|...+|..|.+++..++..|.+++++.. +..+.+.++.+|++.+.
T Consensus 133 ~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 189 (325)
T TIGR02824 133 QRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAG---SDEKCAACEALGADIAI 189 (325)
T ss_pred HhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEE
Confidence 4455667777666666799999999999999998655433 23455566778875443
No 313
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=57.69 E-value=63 Score=26.82 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=26.9
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIA 112 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~ 112 (251)
++..++|.-|..-+......|-+++++-|+..
T Consensus 12 vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 12 VLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred EEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 88888999999988888889998888877643
No 314
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=57.54 E-value=1.1e+02 Score=25.26 Aligned_cols=52 Identities=33% Similarity=0.540 Sum_probs=34.6
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEE
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEV 127 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 127 (251)
..+.++.+.+|...++ .|.+++..++..|.+++++.+. +.+.+.++.+|++.
T Consensus 130 ~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 181 (271)
T cd05188 130 GVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGADH 181 (271)
T ss_pred cCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCce
Confidence 3335666755555555 9999999999999776555432 35566667777643
No 315
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=57.49 E-value=1e+02 Score=26.49 Aligned_cols=48 Identities=27% Similarity=0.326 Sum_probs=34.7
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
++.+|...+|..|.+++..|+.+|.+++++.+ +.++.+.++.+|++-+
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 195 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASEV 195 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEE
Confidence 45455555699999999999999998444432 3467777788998543
No 316
>PRK09242 tropinone reductase; Provisional
Probab=57.31 E-value=1e+02 Score=25.67 Aligned_cols=72 Identities=17% Similarity=0.048 Sum_probs=41.8
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHc--CCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRAL--GAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~--Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
++.+|+..+|.-|.+++......|.+++++...... ......++.. +.++..+..+ .+.++..+...+..++
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 455888888999999999999999987666543211 1122233333 5666555432 2333444444444443
No 317
>PRK14031 glutamate dehydrogenase; Provisional
Probab=57.17 E-value=53 Score=30.86 Aligned_cols=53 Identities=11% Similarity=-0.031 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEec
Q 025563 57 KDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMP 109 (251)
Q Consensus 57 K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp 109 (251)
=-|+..+.+..+.+..-......+|+..+.||-|..+|.....+|.+++.+.+
T Consensus 207 Tg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 207 TGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred cHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 34677777777655432333334499999999999999999999999998876
No 318
>PRK12742 oxidoreductase; Provisional
Probab=57.16 E-value=1e+02 Score=25.19 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=37.0
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHH-HHHcCCEEEEeCCC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIV-LRALGAEVYLADQA 133 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~-~~~~Ga~v~~v~~~ 133 (251)
+++.+|+..+|.-|.++|......|.++++..... ..+.+. ....+++.+.++-.
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~~D~~ 61 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGS--KDAAERLAQETGATAVQTDSA 61 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCC--HHHHHHHHHHhCCeEEecCCC
Confidence 34568888889999999999999999876654332 223222 34457777666643
No 319
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=57.02 E-value=81 Score=26.06 Aligned_cols=70 Identities=23% Similarity=0.239 Sum_probs=42.5
Q ss_pred eEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhh
Q 025563 79 SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILS 148 (251)
Q Consensus 79 ~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~ 148 (251)
+.+|+.++|.-|.++|..-.+.|.++++....... ......++..+.+++.+..+ .+.++..+..+++.+
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQS 76 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHH
Confidence 35788888999999999998899987665533321 22344566677666555332 133344444444443
No 320
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=57.02 E-value=65 Score=28.74 Aligned_cols=85 Identities=15% Similarity=0.091 Sum_probs=43.7
Q ss_pred EEEeccChHHHHHHHHHHHCCCc-EEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYK-LIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQF 159 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~-~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 159 (251)
|+...++..+..++..+- .+-. -.|+++.-.-..-...++.+|++++.++-..++.-..+...+..+ ....+|+.
T Consensus 77 I~~~~Gs~e~i~~~~~~~-~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~~~-~~~lv~l~-- 152 (351)
T PRK01688 77 VLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLDNWQLDLPAIADNLD-GVKVVYVC-- 152 (351)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHHhcc-CCcEEEEe--
Confidence 666666677666655443 2211 344444433334456678899999998654333211222222222 23566764
Q ss_pred CCCchHHHHHhh
Q 025563 160 ENPANPKIHYET 171 (251)
Q Consensus 160 ~n~~~~~~g~~t 171 (251)
||.|+ .|...
T Consensus 153 -nPnNP-TG~~~ 162 (351)
T PRK01688 153 -SPNNP-TGNLI 162 (351)
T ss_pred -CCCCC-CCCCC
Confidence 55555 35544
No 321
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=56.83 E-value=95 Score=26.73 Aligned_cols=53 Identities=32% Similarity=0.485 Sum_probs=38.7
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEE
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEV 127 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 127 (251)
..+.++.+.+|...+|..|.+++..++..|.+++++... +.+.+.++.+|++-
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~~~~~ 210 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRS---PEKLKILKELGADY 210 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHcCCcE
Confidence 556667776777777999999999999999987666532 34555567677643
No 322
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=56.83 E-value=51 Score=31.68 Aligned_cols=54 Identities=13% Similarity=-0.030 Sum_probs=40.5
Q ss_pred CCeEEEEecc---ChHHHHHHHHHHHCC-CcEEEEecCCC--cHHHHHHHHHcCCEEEEeC
Q 025563 77 GKSVLIETTG---GNTGIGLAFIAALRG-YKLIIVMPSIA--SMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 77 g~~~vv~~ss---GN~g~alA~~a~~~G-~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~v~ 131 (251)
|.+ |+..+. +|.+++++.+++++| ++++++.|+.. +...++.++..|+.+...+
T Consensus 174 glk-Va~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 174 FIH-IALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred CCE-EEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 444 555555 689999999999998 99999999864 4455566777888876654
No 323
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=56.81 E-value=1.4e+02 Score=26.46 Aligned_cols=53 Identities=25% Similarity=0.341 Sum_probs=36.8
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCE
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAE 126 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 126 (251)
...+.++.+.+|. ..|..|.+++..|+.+|.+.++++.. +..+.+.++.+|++
T Consensus 177 ~~~~~~g~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~--~~~~~~~~~~~g~~ 229 (363)
T cd08279 177 TARVRPGDTVAVI-GCGGVGLNAIQGARIAGASRIIAVDP--VPEKLELARRFGAT 229 (363)
T ss_pred ccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcC--CHHHHHHHHHhCCe
Confidence 3445667775666 56899999999999999874444422 34566666778874
No 324
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=56.81 E-value=85 Score=27.57 Aligned_cols=51 Identities=31% Similarity=0.372 Sum_probs=37.1
Q ss_pred CCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 75 ~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
.+|.+.+|. .+|..|.+++..++.+|.+.+++. ..++.+....+.+|++-+
T Consensus 162 ~~g~~vlV~-g~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~ 212 (341)
T cd05281 162 VSGKSVLIT-GCGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGADVV 212 (341)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCccee
Confidence 456675665 468999999999999998645555 335677778888998543
No 325
>PRK06180 short chain dehydrogenase; Provisional
Probab=56.69 E-value=86 Score=26.65 Aligned_cols=32 Identities=25% Similarity=0.243 Sum_probs=26.7
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEec
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMP 109 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp 109 (251)
++.+|+..+|--|.+++....+.|.+++++..
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVR 36 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeC
Confidence 44588888899999999999999999777654
No 326
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=56.55 E-value=1.5e+02 Score=26.69 Aligned_cols=82 Identities=17% Similarity=0.100 Sum_probs=44.6
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCC---CCCCCeEEEEeccChHHHHHHHHHH-HCCCcEEEEecCCCcHHHHHHHHHcC
Q 025563 49 MMEPCCSVKDRIALSMIKDAEEKGL---ITPGKSVLIETTGGNTGIGLAFIAA-LRGYKLIIVMPSIASMERRIVLRALG 124 (251)
Q Consensus 49 ~~~ptGS~K~R~a~~~l~~a~~~g~---~~~g~~~vv~~ssGN~g~alA~~a~-~~G~~~~ivvp~~~~~~~~~~~~~~G 124 (251)
+..+.|.-..|.+..-.... ..|. ..+.. .|+..+++..+..++..+- .-|=...|++|.-.-..-....+..|
T Consensus 60 Y~~~~G~~~lr~aia~~~~~-~~~~~~~~~~~~-~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g 137 (393)
T TIGR03538 60 YPTTKGLPELRQAIARWLER-RFDLPTGVDPER-HVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAG 137 (393)
T ss_pred CCCCCCCHHHHHHHHHHHHH-hhCCcccCCCCc-eEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcC
Confidence 33456766777543332221 1121 23322 2666777777776655442 23433456666544333345678899
Q ss_pred CEEEEeCC
Q 025563 125 AEVYLADQ 132 (251)
Q Consensus 125 a~v~~v~~ 132 (251)
++++.++-
T Consensus 138 ~~~~~v~~ 145 (393)
T TIGR03538 138 AEPYFLNC 145 (393)
T ss_pred CeEEEeec
Confidence 99998864
No 327
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=56.55 E-value=1.3e+02 Score=25.90 Aligned_cols=78 Identities=18% Similarity=0.103 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhC----CCcEE
Q 025563 138 GILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKN----PNIKV 213 (251)
Q Consensus 138 ~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~----~~~~v 213 (251)
++.+-.++..+++++...............++. ...+++++. .++|+|+|. +...+.|+..++++.+ .++.|
T Consensus 159 ~R~~Gf~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~l~~~-~~~~ai~~~--~d~~A~g~~~al~~~g~~vp~di~v 234 (305)
T cd06324 159 LREAGLRRALAEHPDVRLRQVVYAGWSEDEAYE-QAENLLKRY-PDVRLIWAA--NDQMAFGALRAAKEAGRKPGRDVLF 234 (305)
T ss_pred HHHHHHHHHHHHCCCceEeeeecCCCCHHHHHH-HHHHHHHHC-CCccEEEEC--CchHHHHHHHHHHHcCCCcCCCEEE
Confidence 344444555565532222111112223332433 444555543 468988863 5666779999999875 36889
Q ss_pred EEEeCC
Q 025563 214 YGVEPT 219 (251)
Q Consensus 214 igVep~ 219 (251)
+|.+-.
T Consensus 235 ig~D~~ 240 (305)
T cd06324 235 GGVNWS 240 (305)
T ss_pred EecCCC
Confidence 998755
No 328
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=56.34 E-value=1.1e+02 Score=25.16 Aligned_cols=131 Identities=15% Similarity=0.134 Sum_probs=71.8
Q ss_pred CCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCC---CcHHHHHHHHHcCCE-EEEeCCCCChHHHHHHHHHHhhcC
Q 025563 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSI---ASMERRIVLRALGAE-VYLADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 75 ~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~---~~~~~~~~~~~~Ga~-v~~v~~~~~~~~~~~~a~~~~~~~ 150 (251)
++|+. +++-++|.-..++-++ +.+=.+.++.=+. .-....+-++.+|.+ +..+.+. +-+....+. .
T Consensus 33 ~~g~~-l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~-----Ap~~L~~~~--~ 102 (187)
T COG2242 33 RPGDR-LWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGD-----APEALPDLP--S 102 (187)
T ss_pred CCCCE-EEEeCCCccHHHHHHH--HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEecc-----chHhhcCCC--C
Confidence 34554 8877777777777666 4454555554222 112223335667653 5555553 111111111 3
Q ss_pred CCeEecCCCCCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccc
Q 025563 151 PNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAML 224 (251)
Q Consensus 151 ~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~ 224 (251)
++.+|+....+ +. + +-...++.+ ..-..+|+-+-+=-+++-+...+++.+-. .|+-|+-..+..+
T Consensus 103 ~daiFIGGg~~---i~-~---ile~~~~~l-~~ggrlV~naitlE~~~~a~~~~~~~g~~-ei~~v~is~~~~l 167 (187)
T COG2242 103 PDAIFIGGGGN---IE-E---ILEAAWERL-KPGGRLVANAITLETLAKALEALEQLGGR-EIVQVQISRGKPL 167 (187)
T ss_pred CCEEEECCCCC---HH-H---HHHHHHHHc-CcCCeEEEEeecHHHHHHHHHHHHHcCCc-eEEEEEeecceec
Confidence 68888876522 22 1 111122223 22367888888888888888888887754 6666666655443
No 329
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=56.33 E-value=89 Score=26.22 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=40.8
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHH-cCCEEEEeCC-CCChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRA-LGAEVYLADQ-AGGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~-~Ga~v~~v~~-~~~~~~~~~~a~~~~~~ 149 (251)
++.+|+..+|.-|.++|....+.|.+++++- .. ..+.+.+.. .+.++..+.. -.+.++..+..++..++
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~-r~--~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLD-KS--AAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAA 76 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEe-CC--HHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHH
Confidence 4558888889999999999999999877653 22 233333333 3555544432 12334444444444443
No 330
>PRK08251 short chain dehydrogenase; Provisional
Probab=56.29 E-value=1.1e+02 Score=25.17 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=40.6
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcH-HHHHHHHHc--CCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASM-ERRIVLRAL--GAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~~~~~--Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
++.+|+.++|..|.++|..-.+.|.++++........ .....++.. +.+++.+..+ .+.++..+..++..++
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDE 78 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3458888889999999999888898766664432111 112222222 5666555332 2334444444444443
No 331
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=56.17 E-value=72 Score=29.23 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=28.3
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIA 112 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~ 112 (251)
|-.-++|..|+-++.+|+++|++++++-|...
T Consensus 4 vgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~ 35 (375)
T COG0026 4 VGILGGGQLGRMMALAAARLGIKVIVLDPDAD 35 (375)
T ss_pred EEEEcCcHHHHHHHHHHHhcCCEEEEecCCCC
Confidence 66678899999999999999999999987654
No 332
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=56.11 E-value=1.2e+02 Score=25.49 Aligned_cols=56 Identities=29% Similarity=0.395 Sum_probs=39.0
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
.+.+.+|.+.+|...+|..|.+++..++.+|.+++++. .++.+.+.++.+|++-+.
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~~~~ 186 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTV---SSEEKAELARAAGADHVI 186 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHCCCCEEE
Confidence 34556667755655579999999999999998855543 244566777778874443
No 333
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=55.95 E-value=1.4e+02 Score=25.99 Aligned_cols=57 Identities=21% Similarity=0.208 Sum_probs=39.3
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHH-CCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAAL-RGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~-~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
+...+.+|.+.+|.. +|-.|.+++..++. .|.+++... .++.+.+.++.+|++.+.-
T Consensus 156 ~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~---~~~~~~~~~~~~g~~~v~~ 213 (338)
T PRK09422 156 KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVD---INDDKLALAKEVGADLTIN 213 (338)
T ss_pred HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe---CChHHHHHHHHcCCcEEec
Confidence 344566777756665 78899998888887 498754443 3346777778899865543
No 334
>PRK07063 short chain dehydrogenase; Provisional
Probab=55.93 E-value=1e+02 Score=25.77 Aligned_cols=71 Identities=15% Similarity=0.101 Sum_probs=41.5
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHH--cCCEEEEe--CCCCChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRA--LGAEVYLA--DQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~--~Ga~v~~v--~~~~~~~~~~~~a~~~~~~ 149 (251)
++.+|+.++|--|.++|..-...|.+++++...... ....+.++. .+.++..+ +-. +.++..+...+..++
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVT-DAASVAAAVAAAEEA 83 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCC-CHHHHHHHHHHHHHH
Confidence 455888888999999999988999987665432211 122333443 35555443 332 344444444554444
No 335
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.91 E-value=1.1e+02 Score=25.85 Aligned_cols=72 Identities=21% Similarity=0.138 Sum_probs=39.0
Q ss_pred CeEEEEeccCh--HHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHH-cCCEE-EEeCCCCChHHHHHHHHHHhhcC
Q 025563 78 KSVLIETTGGN--TGIGLAFIAALRGYKLIIVMPSIASMERRIVLRA-LGAEV-YLADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 78 ~~~vv~~ssGN--~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~-~Ga~v-~~v~~~~~~~~~~~~a~~~~~~~ 150 (251)
++.+|+..+++ -|.++|....+.|.++++..........++.+.. .|... +.+|-. +.++..+..++..++.
T Consensus 9 k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~-~~~~v~~~~~~~~~~~ 84 (260)
T PRK06603 9 KKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVT-NPKSISNLFDDIKEKW 84 (260)
T ss_pred cEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCC-CHHHHHHHHHHHHHHc
Confidence 45466666653 6788887778889987665332111233444433 35443 345543 4455555555555543
No 336
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.90 E-value=1.1e+02 Score=24.97 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=41.6
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcH--HHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASM--ERRIVLRALGAEVYLADQA-GGFEGILRKGEEILS 148 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~ 148 (251)
++.+|+..+|.-|.++|......|.+++++...+... ...+.++..+.++..+..+ .+.++..+.+.+..+
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVE 79 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 4558888889999999998888899877763333211 2233344456666554332 233333333444444
No 337
>PRK07774 short chain dehydrogenase; Provisional
Probab=55.83 E-value=1.1e+02 Score=25.34 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=41.7
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcH-HHHHHHHHcCCEEE--EeCCCCChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASM-ERRIVLRALGAEVY--LADQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~~~~~Ga~v~--~v~~~~~~~~~~~~a~~~~~~ 149 (251)
++.+|+.++|--|.+++......|.+++++....... ...+.++..+.+++ .++-. +.++..+...+..++
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~ 80 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVS-DPDSAKAMADATVSA 80 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCC-CHHHHHHHHHHHHHH
Confidence 4558888889999999999999999877765432211 22233444455554 33332 333334434444433
No 338
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=55.49 E-value=1.5e+02 Score=26.39 Aligned_cols=104 Identities=14% Similarity=0.147 Sum_probs=48.6
Q ss_pred EEecCCCcHHHHHHHHHcCC-EEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCC-CCCchHHHHHhhHHHHHhhhhC-C
Q 025563 106 IVMPSIASMERRIVLRALGA-EVYLADQAGGFEGILRKGEEILSNTPNGFMFRQF-ENPANPKIHYETTGPEIWKDSG-G 182 (251)
Q Consensus 106 ivvp~~~~~~~~~~~~~~Ga-~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~n~~~~~~g~~t~~~EI~~q~~-~ 182 (251)
++.-++.-...-+.++.+|. ++..+.+...++...+...+..++. +....+.. .||. . . ...++.++++ .
T Consensus 4 i~~G~g~l~~l~~~l~~~g~~~~livt~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~p~-~----~-~v~~~~~~~~~~ 76 (337)
T cd08177 4 VVFGPGALAALAAELERLGASRALVLTTPSLATKLAERVASALGDR-VAGTFDGAVMHTP-V----E-VTEAAVAAAREA 76 (337)
T ss_pred EEECCCHHHHHHHHHHHcCCCeEEEEcChHHHHHHHHHHHHHhccC-CcEEeCCCCCCCC-H----H-HHHHHHHHHHhc
Confidence 33334433444456677774 4555544322232333344444443 22222211 2222 1 1 3334444443 2
Q ss_pred CCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCC
Q 025563 183 DVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPT 219 (251)
Q Consensus 183 ~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~ 219 (251)
++| .|+++|+|+.+ =+++++.... .++++.|-..
T Consensus 77 ~~d-~IIaiGGGs~i-D~aK~ia~~~-~~p~i~IPTt 110 (337)
T cd08177 77 GAD-GIVAIGGGSTI-DLAKAIALRT-GLPIIAIPTT 110 (337)
T ss_pred CCC-EEEEeCCcHHH-HHHHHHHHHh-cCCEEEEcCC
Confidence 355 56788888754 5566554332 3677777554
No 339
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=55.48 E-value=1.2e+02 Score=26.60 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=40.1
Q ss_pred HHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 69 EEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 69 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
.+...+.+|++.+|. ++|-.|.+++..|+.+|.+.++++.. ++.+...++.+|++-+.
T Consensus 155 ~~~~~~~~g~~vlI~-g~g~vG~~a~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~vi 212 (343)
T cd05285 155 CRRAGVRPGDTVLVF-GAGPIGLLTAAVAKAFGATKVVVTDI--DPSRLEFAKELGATHTV 212 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcEEe
Confidence 355667778886665 56788999999999999984444422 24566677778876443
No 340
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.45 E-value=1.3e+02 Score=25.85 Aligned_cols=72 Identities=22% Similarity=0.201 Sum_probs=41.0
Q ss_pred CeEEEEecc--ChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHH-HHcCCE-EEEeCCCCChHHHHHHHHHHhhcC
Q 025563 78 KSVLIETTG--GNTGIGLAFIAALRGYKLIIVMPSIASMERRIVL-RALGAE-VYLADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 78 ~~~vv~~ss--GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~-~~~Ga~-v~~v~~~~~~~~~~~~a~~~~~~~ 150 (251)
++.+|+..+ +--|+++|....+.|.++++.........+++.+ +.+|.+ .+.++-. +.++..+..++..++.
T Consensus 6 k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~-d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVS-KPEHFKSLAESLKKDL 81 (274)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCC-CHHHHHHHHHHHHHHc
Confidence 444566554 4578889988888999877654332112344444 344543 4455543 5555555555555544
No 341
>PRK09414 glutamate dehydrogenase; Provisional
Probab=55.36 E-value=58 Score=30.64 Aligned_cols=53 Identities=11% Similarity=-0.034 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEec
Q 025563 57 KDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMP 109 (251)
Q Consensus 57 K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp 109 (251)
=-|+..+.+..+.+.........+|+..+-||-|..+|.....+|.+++.+.+
T Consensus 211 Tg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 211 TGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred ccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 34677777777665543333334599999999999999999999998887764
No 342
>PRK07825 short chain dehydrogenase; Provisional
Probab=55.25 E-value=96 Score=26.18 Aligned_cols=68 Identities=16% Similarity=0.002 Sum_probs=41.6
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHH-HHHcC-CEEEEeCCCCChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIV-LRALG-AEVYLADQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~-~~~~G-a~v~~v~~~~~~~~~~~~a~~~~~~ 149 (251)
++.+|+..+|.-|.++|......|.+++++... +.+.+. .+..+ .+++.++-. +.++..+...++.+.
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~~ 75 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLD---EALAKETAAELGLVVGGPLDVT-DPASFAAFLDAVEAD 75 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhccceEEEccCC-CHHHHHHHHHHHHHH
Confidence 456888888999999999988899986665432 233322 23333 555666543 444444444444443
No 343
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=55.25 E-value=85 Score=27.61 Aligned_cols=50 Identities=30% Similarity=0.384 Sum_probs=36.7
Q ss_pred CCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 75 ~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
.++++.+|...+|..|.+++..++.+|.+.+... . +.+.+.++.+|++-+
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~--~--~~~~~~~~~~g~~~v 202 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA--S--PKNFDLVKSLGADAV 202 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE--C--cccHHHHHhcCCCEE
Confidence 4567756666678999999999999999766543 2 256677788998433
No 344
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=55.11 E-value=1.2e+02 Score=25.06 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=41.9
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcH-HHHHHHHHcC---CEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASM-ERRIVLRALG---AEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~~~~~G---a~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
+++.+|+..+|.-|.+++......|.+++++....... .....++..+ .+++.++-. .+.++..+....+.+.
T Consensus 12 ~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (247)
T PRK08945 12 DRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQ 89 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHH
Confidence 45668888899999999999888899777655332211 1223444444 234444432 1334444444444443
No 345
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=55.08 E-value=1.1e+02 Score=24.81 Aligned_cols=54 Identities=24% Similarity=0.254 Sum_probs=36.8
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEeC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLAD 131 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v~ 131 (251)
++.+|+..+|..|..++......|.+++++...... ......++..|.++..+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLV 60 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEE
Confidence 445888888999999999988899996555433221 122445566777776654
No 346
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=54.77 E-value=1.3e+02 Score=25.25 Aligned_cols=73 Identities=15% Similarity=0.081 Sum_probs=44.1
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcH--HHHHHHH-HcCCEEEEe--CCCCChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASM--ERRIVLR-ALGAEVYLA--DQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~~~-~~Ga~v~~v--~~~~~~~~~~~~a~~~~~~~ 150 (251)
+++.+|+.+++.-|+++|....+.|.+++++...+... ...+.++ ..|.++..+ +-. +.++..+...+..++.
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~~~ 85 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNIL-EPETYKELFKKIDEDF 85 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCC-CHHHHHHHHHHHHHhc
Confidence 35568888889999999999999999877664433211 1122333 246555444 433 4555555555555543
No 347
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=54.74 E-value=67 Score=28.83 Aligned_cols=34 Identities=18% Similarity=0.416 Sum_probs=21.6
Q ss_pred CCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCC
Q 025563 183 DVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPT 219 (251)
Q Consensus 183 ~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~ 219 (251)
++| +|+++|+|+.+ -+++++.... ..+++.|-..
T Consensus 77 ~~d-~IIavGGGs~~-D~aK~ia~~~-~~p~i~VPTt 110 (349)
T cd08550 77 EAD-VIIGVGGGKTL-DTAKAVADRL-DKPIVIVPTI 110 (349)
T ss_pred CCC-EEEEecCcHHH-HHHHHHHHHc-CCCEEEeCCc
Confidence 345 67889988754 6677665432 3577777554
No 348
>PRK05854 short chain dehydrogenase; Provisional
Probab=54.68 E-value=1.1e+02 Score=26.80 Aligned_cols=73 Identities=21% Similarity=0.305 Sum_probs=44.0
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHc--CCEE--EEeCCCCChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRAL--GAEV--YLADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~--Ga~v--~~v~~~~~~~~~~~~a~~~~~~~ 150 (251)
+++.+|+..++--|.++|..-.+.|.++++....... ...++.++.. +.++ +.++-. +.++..+.+.++.++.
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~-d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLS-SLASVAALGEQLRAEG 91 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCC-CHHHHHHHHHHHHHhC
Confidence 3456888888888999998888899987776543221 1123333322 3444 444443 5666666666665544
No 349
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=54.59 E-value=1e+02 Score=25.47 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=34.8
Q ss_pred eEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHH-HHHHHHHcCCEEEEeC
Q 025563 79 SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASME-RRIVLRALGAEVYLAD 131 (251)
Q Consensus 79 ~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~-~~~~~~~~Ga~v~~v~ 131 (251)
+.+|+..+|-.|.+++....+.|.+++++........ ....++..+.++..+.
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 56 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLV 56 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 4588888899999999998889998777654422211 2223444566665543
No 350
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=54.45 E-value=1.7e+02 Score=26.50 Aligned_cols=80 Identities=14% Similarity=0.104 Sum_probs=45.8
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCC--CCCCCeEEEEeccChHHHHHHHHHH---HCCCcEEEEecCCCcHHHHHHHHHc
Q 025563 49 MMEPCCSVKDRIALSMIKDAEEKGL--ITPGKSVLIETTGGNTGIGLAFIAA---LRGYKLIIVMPSIASMERRIVLRAL 123 (251)
Q Consensus 49 ~~~ptGS~K~R~a~~~l~~a~~~g~--~~~g~~~vv~~ssGN~g~alA~~a~---~~G~~~~ivvp~~~~~~~~~~~~~~ 123 (251)
+..+.|....|-+..-. ....+. ..+....++..+++..|..++..+- .-| -.|+++.-.-..-...++.+
T Consensus 65 Y~~~~G~~~lR~aia~~--~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pG--d~Vlv~~P~y~~~~~~~~~~ 140 (396)
T PRK09257 65 YLPIEGLAAYRQAVQEL--LFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPD--AKVWVSDPTWPNHRAIFEAA 140 (396)
T ss_pred cCCCCCCHHHHHHHHHH--hcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCC--CeEEECCCCcccHHHHHHHc
Confidence 44457777787544332 222221 1332211367777788877775322 233 24555655545567778889
Q ss_pred CCEEEEeCC
Q 025563 124 GAEVYLADQ 132 (251)
Q Consensus 124 Ga~v~~v~~ 132 (251)
|++++.++-
T Consensus 141 g~~~v~v~~ 149 (396)
T PRK09257 141 GLEVKTYPY 149 (396)
T ss_pred CCcEEEEec
Confidence 999998863
No 351
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=54.44 E-value=1.4e+02 Score=25.73 Aligned_cols=54 Identities=30% Similarity=0.421 Sum_probs=39.0
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
+.+.+++..+|...+|-.|.+++..++.+|.+++.+.+ ++.+.+.++.+|++-+
T Consensus 135 ~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v 188 (329)
T cd08250 135 GEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCDRP 188 (329)
T ss_pred cCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCceE
Confidence 45667777677777899999999999999998655432 3456666677887443
No 352
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=54.38 E-value=83 Score=23.27 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=32.1
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCC-ChHHHHHHHHHHhhcC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG-GFEGILRKGEEILSNT 150 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~-~~~~~~~~a~~~~~~~ 150 (251)
++...+|++++.+|.+ +-..|.+++.+.. ..-.+..-.||..-+..+... +.++..+.+.+.+++.
T Consensus 21 vv~T~sG~ta~~isk~--RP~~pIiavt~~~--~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~a~~~~~~~ 87 (117)
T PF02887_consen 21 VVFTESGRTARLISKY--RPKVPIIAVTPNE--SVARQLSLYWGVYPVLIEEFDKDTEELIAEALEYAKER 87 (117)
T ss_dssp EEE-SSSHHHHHHHHT---TSSEEEEEESSH--HHHHHGGGSTTEEEEECSSHSHSHHHHHHHHHHHHHHT
T ss_pred EEECCCchHHHHHHhh--CCCCeEEEEcCcH--HHHhhhhcccceEEEEeccccccHHHHHHHHHHHHHHc
Confidence 5555557776665543 2235555554332 122222244566666665543 4455555555555443
No 353
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.31 E-value=84 Score=25.95 Aligned_cols=54 Identities=20% Similarity=0.172 Sum_probs=37.0
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC--cHHHHHHHHHcCCEEEEeC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA--SMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~v~ 131 (251)
.+.+|+.++|--|.+++......|.++++...... .......++..|.++..+.
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVL 62 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEE
Confidence 45578888899999999988889998776553321 1233455667777765543
No 354
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=54.26 E-value=27 Score=34.29 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=40.5
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC--------------c----HHHHHHHHHcCCEEEEe
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA--------------S----MERRIVLRALGAEVYLA 130 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~--------------~----~~~~~~~~~~Ga~v~~v 130 (251)
++. |+.-++|-.|.+.|+..++.|.++++|=.... + ...++.++.+|.+++.-
T Consensus 310 ~kk-VaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 310 SEK-VAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CCE-EEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcC
Confidence 444 88899999999999999999999888853321 1 13567788899988654
No 355
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=54.06 E-value=1.2e+02 Score=26.43 Aligned_cols=50 Identities=24% Similarity=0.254 Sum_probs=35.6
Q ss_pred CCeEEEEeccChHHHHHHHHHHHC-CCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALR-GYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~-G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
|.+.+|...+|..|.+++..|+.+ |.+++.+.+. +++.+.++.+|++-+.
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~---~~~~~~l~~~g~~~~~ 199 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASR---PESQEWVLELGAHHVI 199 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc---HHHHHHHHHcCCCEEE
Confidence 667566666789999999999987 9886555332 4567777788885443
No 356
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=54.05 E-value=1.3e+02 Score=27.25 Aligned_cols=52 Identities=19% Similarity=0.267 Sum_probs=30.3
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
++..++|..+..++..+-..+-.-.|++|...-......++..|++++.++-
T Consensus 51 ~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~ 102 (379)
T PRK11658 51 AIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDV 102 (379)
T ss_pred EEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEec
Confidence 4555566665555554432222235666665555556667778888888764
No 357
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=54.02 E-value=69 Score=28.41 Aligned_cols=60 Identities=20% Similarity=0.230 Sum_probs=38.8
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHHH----HHHcCCEEEEeC
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRIV----LRALGAEVYLAD 131 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~----~~~~Ga~v~~v~ 131 (251)
.|.++ |.+..+..-.+|..++++.+++++|+.+.++.|+... ....+. .+..|.++...+
T Consensus 143 ~g~l~-g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 143 FGKLK-GVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred hCCCC-CcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 45443 3442333333799999999999999999999988642 333333 345677776654
No 358
>PRK07576 short chain dehydrogenase; Provisional
Probab=53.87 E-value=1.3e+02 Score=25.38 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=41.4
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEe--CCCCChHHHHHHHHHHhh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLA--DQAGGFEGILRKGEEILS 148 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v--~~~~~~~~~~~~a~~~~~ 148 (251)
++.+|+..+|.-|.+++......|.+++++...... ....+.+...+.+++.+ +-. +.++..+..++..+
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~-~~~~i~~~~~~~~~ 82 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVR-DYAAVEAAFAQIAD 82 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCC-CHHHHHHHHHHHHH
Confidence 456888888999999999888899987666533211 12223455556655444 432 33444444444433
No 359
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=53.64 E-value=91 Score=26.98 Aligned_cols=50 Identities=32% Similarity=0.500 Sum_probs=34.4
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAE 126 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 126 (251)
....+++|.+.+|...+|..|.+++..|+.+|.+++++. +.+.++.+|++
T Consensus 156 ~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~-------~~~~~~~~g~~ 205 (325)
T cd08264 156 KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVS-------RKDWLKEFGAD 205 (325)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe-------HHHHHHHhCCC
Confidence 335566777756655569999999999999999865543 12444556663
No 360
>PRK05650 short chain dehydrogenase; Provisional
Probab=53.60 E-value=1.3e+02 Score=25.38 Aligned_cols=70 Identities=16% Similarity=0.219 Sum_probs=42.5
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
.+|+.++|.-|.+++......|.+++++...... ......++..|.+++.+..+ .+.++..+...++.++
T Consensus 3 vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 74 (270)
T PRK05650 3 VMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEK 74 (270)
T ss_pred EEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4788888999999999988899987776543221 22344466667666554332 2334444444444443
No 361
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=53.58 E-value=91 Score=28.16 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=35.2
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC--cHHHHHHHH----HcCCEEEEe
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA--SMERRIVLR----ALGAEVYLA 130 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~~~----~~Ga~v~~v 130 (251)
|.+..+..-..|.++++..+++++|+.++++.|+.. +...++.++ ..|.++...
T Consensus 154 glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~ 213 (338)
T PRK02255 154 DCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVT 213 (338)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEE
Confidence 444333333378999999999999999999999863 333333332 346655544
No 362
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=53.56 E-value=1.2e+02 Score=27.59 Aligned_cols=110 Identities=19% Similarity=0.237 Sum_probs=49.2
Q ss_pred cEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChH--HHHHHHHHHhhcCC-CeEecCCC-CCCchHHHHHhhHHHHHhh
Q 025563 103 KLIIVMPSIASMERRIVLRALGAEVYLADQAGGFE--GILRKGEEILSNTP-NGFMFRQF-ENPANPKIHYETTGPEIWK 178 (251)
Q Consensus 103 ~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~--~~~~~a~~~~~~~~-~~~~~~~~-~n~~~~~~g~~t~~~EI~~ 178 (251)
|..|+.-.+.-...-+.++.+|-++..|.+...++ +..+...+..++.+ .....+.. .||..- ...-+.+..+
T Consensus 7 p~~i~~G~g~~~~l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~---~v~~~~~~~~ 83 (382)
T cd08187 7 PTKIIFGKGTESELGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLE---TVREGIELCK 83 (382)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHH---HHHHHHHHHH
Confidence 44444444444444455666666666664322222 12333444434321 12222221 232211 1112223333
Q ss_pred hhCCCCCEEEEecCchhHHHHHHHHHHhh-----------------CCCcEEEEEeCC
Q 025563 179 DSGGDVDILVAGIGTGGTVTGSGRFLKEK-----------------NPNIKVYGVEPT 219 (251)
Q Consensus 179 q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~-----------------~~~~~vigVep~ 219 (251)
+ .++|. |+++|+|+.+ -++++.... .+.++++.|-..
T Consensus 84 ~--~~~D~-IIaiGGGS~i-D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 137 (382)
T cd08187 84 E--EKVDF-ILAVGGGSVI-DSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTL 137 (382)
T ss_pred H--cCCCE-EEEeCChHHH-HHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCC
Confidence 3 24564 7889988754 445544321 245788888543
No 363
>PRK07814 short chain dehydrogenase; Provisional
Probab=53.48 E-value=96 Score=26.07 Aligned_cols=71 Identities=20% Similarity=0.210 Sum_probs=41.7
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEE--eCCCCChHHHHHHHHHHhh
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYL--ADQAGGFEGILRKGEEILS 148 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~--v~~~~~~~~~~~~a~~~~~ 148 (251)
+++.+|+.++|--|.+++......|.+++++...... ......++..+.++.. ++-. +.++..+...+..+
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~ 83 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLA-HPEATAGLAGQAVE 83 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCC-CHHHHHHHHHHHHH
Confidence 3556888888999999999988899987766543211 1223344445555544 4433 33333333444433
No 364
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=53.38 E-value=1.5e+02 Score=25.59 Aligned_cols=52 Identities=29% Similarity=0.411 Sum_probs=36.7
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHH-cCCE
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRA-LGAE 126 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~-~Ga~ 126 (251)
+.+.++.+.+|...+|-.|.+++..++.+|.+++++.+ +..+.+.++. +|++
T Consensus 141 ~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~ 193 (329)
T cd05288 141 GKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFD 193 (329)
T ss_pred cCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCc
Confidence 44566677566665799999999999999997554432 3456666666 8874
No 365
>PRK06836 aspartate aminotransferase; Provisional
Probab=53.33 E-value=1.7e+02 Score=26.39 Aligned_cols=82 Identities=15% Similarity=0.185 Sum_probs=41.6
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCC-hHHHHHHHHHHhhcCCCeEecCCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG-FEGILRKGEEILSNTPNGFMFRQF 159 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~ 159 (251)
|+..+++..+..++..+- +.-.-.|+++...-..-...++.+|++++.++...+ +.--.+..++..++....+++...
T Consensus 99 i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p 177 (394)
T PRK06836 99 IVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINSP 177 (394)
T ss_pred EEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeCC
Confidence 666666666665544332 222234455554434445567889999999875322 111122233333333456666544
Q ss_pred CCCc
Q 025563 160 ENPA 163 (251)
Q Consensus 160 ~n~~ 163 (251)
.||.
T Consensus 178 ~NPt 181 (394)
T PRK06836 178 NNPT 181 (394)
T ss_pred CCCC
Confidence 4443
No 366
>PRK07577 short chain dehydrogenase; Provisional
Probab=53.25 E-value=1.2e+02 Score=24.62 Aligned_cols=62 Identities=21% Similarity=0.259 Sum_probs=40.4
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILS 148 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~ 148 (251)
++.+|+..+|-.|.++|....+.|.+++++...... ....+++.++-. +.++..+...++.+
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~--------~~~~~~~~~D~~-~~~~~~~~~~~~~~ 65 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANLGHQVIGIARSAID--------DFPGELFACDLA-DIEQTAATLAQINE 65 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc--------ccCceEEEeeCC-CHHHHHHHHHHHHH
Confidence 445888888999999999999999988877654322 123466666643 33444444444433
No 367
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=53.21 E-value=1.4e+02 Score=25.44 Aligned_cols=72 Identities=22% Similarity=0.074 Sum_probs=41.2
Q ss_pred CeEEEEecc--ChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHH-HHcCC-EEEEeCCCCChHHHHHHHHHHhhcC
Q 025563 78 KSVLIETTG--GNTGIGLAFIAALRGYKLIIVMPSIASMERRIVL-RALGA-EVYLADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 78 ~~~vv~~ss--GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~-~~~Ga-~v~~v~~~~~~~~~~~~a~~~~~~~ 150 (251)
++.+|+.++ +.-|.++|....+.|.++++.........+++.+ +.+|. ..+.++-. +.++..+..+++.++.
T Consensus 11 k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~-~~~~v~~~~~~~~~~~ 86 (272)
T PRK08159 11 KRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVT-DEASIDAVFETLEKKW 86 (272)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCC-CHHHHHHHHHHHHHhc
Confidence 444666654 5799999999999999876653322223444444 33453 33445543 4555555555555543
No 368
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=53.15 E-value=1.5e+02 Score=26.93 Aligned_cols=115 Identities=15% Similarity=0.170 Sum_probs=70.9
Q ss_pred HHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHh
Q 025563 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEIL 147 (251)
Q Consensus 68 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~ 147 (251)
+....+.++|.+ ++...-|--|.|.-..|+..|-.-+|-+ +..++|+++.+.+||.=..-+.. .++.
T Consensus 177 v~nta~v~~G~t-vaV~GlGgVGlaaI~gA~~agA~~IiAv--D~~~~Kl~~A~~fGAT~~vn~~~--~~~v-------- 243 (366)
T COG1062 177 VVNTAKVEPGDT-VAVFGLGGVGLAAIQGAKAAGAGRIIAV--DINPEKLELAKKFGATHFVNPKE--VDDV-------- 243 (366)
T ss_pred hhhcccCCCCCe-EEEEeccHhHHHHHHHHHHcCCceEEEE--eCCHHHHHHHHhcCCceeecchh--hhhH--------
Confidence 445566777777 8888888888888888888888777766 45578888888888764444321 1111
Q ss_pred hcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCC
Q 025563 148 SNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTES 221 (251)
Q Consensus 148 ~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s 221 (251)
.....|+. ++..|+.|-++|+-..+......... +-..-++||-+.+.
T Consensus 244 ----------------------v~~i~~~T---~gG~d~~~e~~G~~~~~~~al~~~~~-~G~~v~iGv~~~~~ 291 (366)
T COG1062 244 ----------------------VEAIVELT---DGGADYAFECVGNVEVMRQALEATHR-GGTSVIIGVAGAGQ 291 (366)
T ss_pred ----------------------HHHHHHhc---CCCCCEEEEccCCHHHHHHHHHHHhc-CCeEEEEecCCCCc
Confidence 11111222 12467777777777655444444443 55566777766654
No 369
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=53.10 E-value=1.7e+02 Score=26.72 Aligned_cols=58 Identities=24% Similarity=0.210 Sum_probs=38.4
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCCC--cEEEEecCCCcHHHHHHHHHc--------CCEEEEeC
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGY--KLIIVMPSIASMERRIVLRAL--------GAEVYLAD 131 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~--~~~ivvp~~~~~~~~~~~~~~--------Ga~v~~v~ 131 (251)
..+++|++.+|...+|--|.+.+..|+.+|. ..++.+ +.++.+++.++.+ ||+...++
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~--~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~ 238 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT--DVNDERLARAQRLFPPEAASRGIELLYVN 238 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEE--cCCHHHHHHHHHhccccccccCceEEEEC
Confidence 4456777755655579999998888998875 223333 3346777777776 77654443
No 370
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=53.06 E-value=98 Score=26.72 Aligned_cols=52 Identities=27% Similarity=0.371 Sum_probs=37.1
Q ss_pred CCCCC-eEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 74 ITPGK-SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 74 ~~~g~-~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
+.++. +.+|...+|..|.+++..|+.+|.+.++.... ..+.+.++.+|++-+
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~~~ 194 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGASEV 194 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCcEE
Confidence 45566 65666666999999999999999986554432 345577788887533
No 371
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=53.05 E-value=78 Score=28.18 Aligned_cols=37 Identities=27% Similarity=0.183 Sum_probs=28.3
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS 113 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~ 113 (251)
|.+..+..-.+|.++++..+++++|+.++++.|+...
T Consensus 153 g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 153 QKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 4443444444899999999999999999999998753
No 372
>PRK06057 short chain dehydrogenase; Provisional
Probab=53.02 E-value=1.3e+02 Score=24.96 Aligned_cols=68 Identities=15% Similarity=0.121 Sum_probs=42.0
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHH-HHHHcCCEEEEeCCCCChHHHHHHHHHHhh
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRI-VLRALGAEVYLADQAGGFEGILRKGEEILS 148 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~-~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~ 148 (251)
+++.+|+..+|.-|.+++....+.|.+++++... ..+.+ ..+..+.+.+.++-. +.++..+...+..+
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~ 75 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVVVGDID---PEAGKAAADEVGGLFVPTDVT-DEDAVNALFDTAAE 75 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHHcCCcEEEeeCC-CHHHHHHHHHHHHH
Confidence 3556888888999999999999999987776432 22222 223345566666554 44444444444433
No 373
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=52.98 E-value=1.3e+02 Score=26.25 Aligned_cols=54 Identities=28% Similarity=0.263 Sum_probs=37.0
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEE
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEV 127 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 127 (251)
...+.++++.+|. .+|-.|.++...|+.+|...++.+ ..+..+...++.+|++-
T Consensus 162 ~~~~~~~~~VlI~-g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (347)
T cd05278 162 LAGIKPGSTVAVI-GAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGATD 215 (347)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCcE
Confidence 3455667775664 568889999999999997444444 33456777778888643
No 374
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=52.91 E-value=1.4e+02 Score=25.14 Aligned_cols=72 Identities=17% Similarity=-0.003 Sum_probs=41.6
Q ss_pred CeEEEEecc--ChHHHHHHHHHHHCCCcEEEEecC-C--CcHHHHHHHHHcCCE--EEEeCCCCChHHHHHHHHHHhhcC
Q 025563 78 KSVLIETTG--GNTGIGLAFIAALRGYKLIIVMPS-I--ASMERRIVLRALGAE--VYLADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 78 ~~~vv~~ss--GN~g~alA~~a~~~G~~~~ivvp~-~--~~~~~~~~~~~~Ga~--v~~v~~~~~~~~~~~~a~~~~~~~ 150 (251)
++.+|+.++ +--|+++|....+.|.++++.... . .....++.++..+.+ .+.++-. +.++..+..++..++.
T Consensus 7 k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-d~~~v~~~~~~~~~~~ 85 (258)
T PRK07370 7 KKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQ-DDAQIEETFETIKQKW 85 (258)
T ss_pred cEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcC-CHHHHHHHHHHHHHHc
Confidence 454666654 578999999889999998765422 1 123445555544433 3444443 4455555555555543
No 375
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=52.90 E-value=1.4e+02 Score=25.23 Aligned_cols=54 Identities=24% Similarity=0.342 Sum_probs=38.2
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
..+.+|++.+|...+|..|.+++..++..|.++++..+. ..+.+.++.+|++-+
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 193 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASS---AEGAELVRQAGADAV 193 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCCEE
Confidence 455667776666667999999999999999886554332 355666677887543
No 376
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=52.86 E-value=65 Score=28.91 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=25.1
Q ss_pred HHHhhhhCC-CCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCC
Q 025563 174 PEIWKDSGG-DVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPT 219 (251)
Q Consensus 174 ~EI~~q~~~-~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~ 219 (251)
.++.++.+. ++| +|+++|+|+.+ -++++.... ..++++.|-..
T Consensus 67 ~~~~~~~~~~~~D-~IIavGGGS~i-D~aK~ia~~-~~~P~iaIPTT 110 (351)
T cd08170 67 ERLAEIARDNGAD-VVIGIGGGKTL-DTAKAVADY-LGAPVVIVPTI 110 (351)
T ss_pred HHHHHHHhhcCCC-EEEEecCchhh-HHHHHHHHH-cCCCEEEeCCc
Confidence 344444322 455 67889988855 666666543 23667777544
No 377
>PRK10490 sensor protein KdpD; Provisional
Probab=52.86 E-value=2e+02 Score=29.63 Aligned_cols=108 Identities=13% Similarity=0.072 Sum_probs=62.1
Q ss_pred CeEEEEeccChHHHHH----HHHHHHCCCcEEEEe-cC----CCcH-------HHHHHHHHcCCEEEEeCCCCChHHHHH
Q 025563 78 KSVLIETTGGNTGIGL----AFIAALRGYKLIIVM-PS----IASM-------ERRIVLRALGAEVYLADQAGGFEGILR 141 (251)
Q Consensus 78 ~~~vv~~ssGN~g~al----A~~a~~~G~~~~ivv-p~----~~~~-------~~~~~~~~~Ga~v~~v~~~~~~~~~~~ 141 (251)
...+|+-|++-++..+ +..|.+++-+++++. .. ..+. ..++..+.+||+++.+.+. + ..+
T Consensus 251 eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~-d---va~ 326 (895)
T PRK10490 251 DAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDP-A---EEK 326 (895)
T ss_pred CeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC-C---HHH
Confidence 4457777776666444 455666787777544 21 1111 2345677899999988774 2 333
Q ss_pred HHHHHhhcCC-CeEecCCCCCCchHHHHHhhHHHHHhhhhCCCCCEEEEecC
Q 025563 142 KGEEILSNTP-NGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIG 192 (251)
Q Consensus 142 ~a~~~~~~~~-~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vG 192 (251)
...++++++. ..+.+.+...... ....++...+.+.. +++|..|++..
T Consensus 327 ~i~~~A~~~~vt~IViG~s~~~~~--~~~~s~~~~l~r~~-~~idi~iv~~~ 375 (895)
T PRK10490 327 AVLRYAREHNLGKIIIGRRASRRW--WRRESFADRLARLG-PDLDLVIVALD 375 (895)
T ss_pred HHHHHHHHhCCCEEEECCCCCCCC--ccCCCHHHHHHHhC-CCCCEEEEeCC
Confidence 4445555542 3355555433221 12346777788776 56787777644
No 378
>PRK08862 short chain dehydrogenase; Provisional
Probab=52.85 E-value=1.3e+02 Score=24.88 Aligned_cols=75 Identities=19% Similarity=0.121 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCc
Q 025563 114 MERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGT 193 (251)
Q Consensus 114 ~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGt 193 (251)
....+.+...|++|+.+... .+...+..+++.+....... -+.|. ...+ ....+..++.++++..+|.+|..+|.
T Consensus 19 ~aia~~la~~G~~V~~~~r~--~~~l~~~~~~i~~~~~~~~~-~~~D~-~~~~-~~~~~~~~~~~~~g~~iD~li~nag~ 93 (227)
T PRK08862 19 RTISCHFARLGATLILCDQD--QSALKDTYEQCSALTDNVYS-FQLKD-FSQE-SIRHLFDAIEQQFNRAPDVLVNNWTS 93 (227)
T ss_pred HHHHHHHHHCCCEEEEEcCC--HHHHHHHHHHHHhcCCCeEE-EEccC-CCHH-HHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 45566777889999998764 23333333333332212221 12222 2232 45566778888874379999999974
No 379
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.77 E-value=2e+02 Score=26.87 Aligned_cols=166 Identities=17% Similarity=0.141 Sum_probs=92.8
Q ss_pred CCCchhhHHHHHHHHHHHHc----CC--CC--CCCeEEEEecc------ChHHHHHHHHHHHCCCcEEEEecCCCcHHHH
Q 025563 52 PCCSVKDRIALSMIKDAEEK----GL--IT--PGKSVLIETTG------GNTGIGLAFIAALRGYKLIIVMPSIASMERR 117 (251)
Q Consensus 52 ptGS~K~R~a~~~l~~a~~~----g~--~~--~g~~~vv~~ss------GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~ 117 (251)
+.|-+|.|.....+..-+.+ ++ +. .+++.||-.-+ -.++.-+|++=++.|+++-++.-++-...-.
T Consensus 66 ~~G~nk~r~i~~~vf~eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAf 145 (483)
T KOG0780|consen 66 ASGVNKRRIIQKAVFDELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAF 145 (483)
T ss_pred ccccCHHHHHHHHHHHHHHHHhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchH
Confidence 36677888776666543322 10 11 11222432221 3478889999999999999999777666666
Q ss_pred HHHHHcCC--EEEEeCC-C-CCh-HHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhC-----CCCCE-
Q 025563 118 IVLRALGA--EVYLADQ-A-GGF-EGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSG-----GDVDI- 186 (251)
Q Consensus 118 ~~~~~~Ga--~v~~v~~-~-~~~-~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~-----~~~d~- 186 (251)
++++.+.. .|-++.. + .+. .=+.+-..++.+++=+.+.++.. |....-.|+++++. -.||-
T Consensus 146 DQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTS--------GRh~qe~sLfeEM~~v~~ai~Pd~v 217 (483)
T KOG0780|consen 146 DQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTS--------GRHKQEASLFEEMKQVSKAIKPDEI 217 (483)
T ss_pred HHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCC--------CchhhhHHHHHHHHHHHhhcCCCeE
Confidence 66665543 3333321 1 111 11223335555554345556543 33333334444331 13664
Q ss_pred -EEEecCchhHHHHHHHHHHhhCC---------------CcEEEEEeCCCCcccc
Q 025563 187 -LVAGIGTGGTVTGSGRFLKEKNP---------------NIKVYGVEPTESAMLN 225 (251)
Q Consensus 187 -vv~~vGtGg~~~Gi~~~~~~~~~---------------~~~vigVep~~s~~~~ 225 (251)
+|.=++.|-.+..-+++|++.-. .-.+-+|+..+||..+
T Consensus 218 i~VmDasiGQaae~Qa~aFk~~vdvg~vIlTKlDGhakGGgAlSaVaaTksPIiF 272 (483)
T KOG0780|consen 218 IFVMDASIGQAAEAQARAFKETVDVGAVILTKLDGHAKGGGALSAVAATKSPIIF 272 (483)
T ss_pred EEEEeccccHhHHHHHHHHHHhhccceEEEEecccCCCCCceeeehhhhCCCEEE
Confidence 45566889999999999998621 1345566777777665
No 380
>CHL00194 ycf39 Ycf39; Provisional
Probab=52.74 E-value=97 Score=27.07 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=26.7
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecC
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPS 110 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~ 110 (251)
.+|+..+|..|..++......|.++++++..
T Consensus 3 IlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 3 LLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 4788888999999999998899998888754
No 381
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=52.63 E-value=1.7e+02 Score=26.13 Aligned_cols=127 Identities=15% Similarity=0.082 Sum_probs=65.2
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHH----H----HHHHHcCCEEEEeCCCCChHHHHHHH---HHHhhc
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMER----R----IVLRALGAEVYLADQAGGFEGILRKG---EEILSN 149 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~----~----~~~~~~Ga~v~~v~~~~~~~~~~~~a---~~~~~~ 149 (251)
|..-++|..|.+.|..+...|++++++=+......+ + ..+...|.. .. ...+....+ .+..++
T Consensus 10 VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~----~~--~~~~~i~~~~~l~~av~~ 83 (321)
T PRK07066 10 FAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLA----PG--ASPARLRFVATIEACVAD 83 (321)
T ss_pred EEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC----hh--hHHhhceecCCHHHHhcC
Confidence 667788999999999999999999998654321111 1 111112210 00 000111111 111222
Q ss_pred CCCeEecCCCCCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcc
Q 025563 150 TPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAM 223 (251)
Q Consensus 150 ~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~ 223 (251)
- +.+... -+.+.+ =-..+..||.+.+ .++.|+.+.-++-..+-+...++ +| -|+++..+.+-+.
T Consensus 84 a-DlViEa---vpE~l~-vK~~lf~~l~~~~--~~~aIlaSnTS~l~~s~la~~~~--~p-~R~~g~HffnP~~ 147 (321)
T PRK07066 84 A-DFIQES---APEREA-LKLELHERISRAA--KPDAIIASSTSGLLPTDFYARAT--HP-ERCVVGHPFNPVY 147 (321)
T ss_pred C-CEEEEC---CcCCHH-HHHHHHHHHHHhC--CCCeEEEECCCccCHHHHHHhcC--Cc-ccEEEEecCCccc
Confidence 1 333332 233332 2234445666554 36776666666555555555543 33 4788888876654
No 382
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=52.62 E-value=1.1e+02 Score=27.73 Aligned_cols=95 Identities=16% Similarity=0.206 Sum_probs=43.2
Q ss_pred CcEEEEecCCCcHHHHHHHHHcCC-EEEEeCCCCChH-HHHHHHHHHhhcCC-CeEecCCC-CCCchHHHHHhhHHHHHh
Q 025563 102 YKLIIVMPSIASMERRIVLRALGA-EVYLADQAGGFE-GILRKGEEILSNTP-NGFMFRQF-ENPANPKIHYETTGPEIW 177 (251)
Q Consensus 102 ~~~~ivvp~~~~~~~~~~~~~~Ga-~v~~v~~~~~~~-~~~~~a~~~~~~~~-~~~~~~~~-~n~~~~~~g~~t~~~EI~ 177 (251)
+|..|+.-.+.-...-+.++.+|. ++..+.+....+ ...+...+..++.+ .....+.. .||..- ...++.
T Consensus 5 ~p~~i~~G~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~------~v~~~~ 78 (377)
T cd08176 5 LPPTNLFGAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTIT------NVKDGL 78 (377)
T ss_pred CCCeEEECcCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHH------HHHHHH
Confidence 455555554444444455667774 555554432222 23444444444331 12222221 133321 123344
Q ss_pred hhhC-CCCCEEEEecCchhHHHHHHHHH
Q 025563 178 KDSG-GDVDILVAGIGTGGTVTGSGRFL 204 (251)
Q Consensus 178 ~q~~-~~~d~vv~~vGtGg~~~Gi~~~~ 204 (251)
++++ .++| +|+++|+|+.+ -++++.
T Consensus 79 ~~~~~~~~D-~IIavGGGS~i-D~aK~i 104 (377)
T cd08176 79 AVFKKEGCD-FIISIGGGSPH-DCAKAI 104 (377)
T ss_pred HHHHhcCCC-EEEEeCCcHHH-HHHHHH
Confidence 4332 2455 66789988864 455544
No 383
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=52.57 E-value=58 Score=32.02 Aligned_cols=52 Identities=23% Similarity=0.287 Sum_probs=38.7
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC---------c---------HHHHHHHHHcCCEEEE
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA---------S---------MERRIVLRALGAEVYL 129 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~---------~---------~~~~~~~~~~Ga~v~~ 129 (251)
++. |+.-++|-.|.+.|...++.|.+++||=.... + ...++.++.+|.+++.
T Consensus 327 ~~~-VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 396 (654)
T PRK12769 327 DKR-VAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFEL 396 (654)
T ss_pred CCE-EEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEEC
Confidence 444 89999999999999999999999888743211 1 1235667888988764
No 384
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=52.53 E-value=1.4e+02 Score=25.05 Aligned_cols=54 Identities=26% Similarity=0.426 Sum_probs=39.4
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAE 126 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 126 (251)
+...+.+|.+.+|...+|..|.++...++.+|++.+.+.+. ..+.+.++.+|++
T Consensus 114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 167 (303)
T cd08251 114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASS---DDKLEYLKQLGVP 167 (303)
T ss_pred HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHcCCC
Confidence 45566777776666777899999999999999985554333 3566667778874
No 385
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=52.51 E-value=95 Score=28.09 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=22.7
Q ss_pred HHhhhhCC-CCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCC
Q 025563 175 EIWKDSGG-DVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPT 219 (251)
Q Consensus 175 EI~~q~~~-~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~ 219 (251)
++.+++.. ++| +|+++|+|+.+ -++++.... ..++++.|-..
T Consensus 75 ~~~~~~~~~~~d-~IIavGGGsv~-D~aK~iA~~-~~~p~i~IPTt 117 (366)
T PRK09423 75 RLVAIAEENGCD-VVIGIGGGKTL-DTAKAVADY-LGVPVVIVPTI 117 (366)
T ss_pred HHHHHHHhcCCC-EEEEecChHHH-HHHHHHHHH-cCCCEEEeCCc
Confidence 44444422 344 66778877754 555555432 23567777543
No 386
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=52.48 E-value=50 Score=29.90 Aligned_cols=51 Identities=25% Similarity=0.300 Sum_probs=35.1
Q ss_pred CCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 75 ~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
.+|++ ++...+|.-|.+++..|+.+|.+++++.+. ++.+.+.++.+|++-+
T Consensus 177 ~~g~~-VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~ 227 (375)
T PLN02178 177 ESGKR-LGVNGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSF 227 (375)
T ss_pred CCCCE-EEEEcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEE
Confidence 35676 455567999999999999999975444322 2334566678888644
No 387
>PRK07074 short chain dehydrogenase; Provisional
Probab=52.45 E-value=1.2e+02 Score=25.28 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=25.9
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEec
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMP 109 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp 109 (251)
++.+|+..+|.-|.++|......|.+++++..
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r 34 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDI 34 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeC
Confidence 34588888899999999998889998777653
No 388
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=52.38 E-value=1.1e+02 Score=26.79 Aligned_cols=59 Identities=29% Similarity=0.325 Sum_probs=40.2
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEe
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLA 130 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v 130 (251)
..+.+|.+.+|...+|..|.+++..|+.+|.++++...... ..++.+.++.+|++-+.-
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~ 201 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLT 201 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEe
Confidence 34556677455555699999999999999998776664321 125666667788865443
No 389
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.36 E-value=1.4e+02 Score=24.91 Aligned_cols=72 Identities=11% Similarity=0.003 Sum_probs=41.2
Q ss_pred CeEEEEecc--ChHHHHHHHHHHHCCCcEEEEecC-----------CCcH-HHHHHHHHcCCEEEEeCCC-CChHHHHHH
Q 025563 78 KSVLIETTG--GNTGIGLAFIAALRGYKLIIVMPS-----------IASM-ERRIVLRALGAEVYLADQA-GGFEGILRK 142 (251)
Q Consensus 78 ~~~vv~~ss--GN~g~alA~~a~~~G~~~~ivvp~-----------~~~~-~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~ 142 (251)
++.+|+..+ |.-|.++|..-...|.+++++... .... .....++.+|.+++.+... .+.++....
T Consensus 6 k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 85 (256)
T PRK12748 6 KIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAPNRV 85 (256)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 344666555 479999999888899987776543 1111 1233455667777665432 233444444
Q ss_pred HHHHhhc
Q 025563 143 GEEILSN 149 (251)
Q Consensus 143 a~~~~~~ 149 (251)
+.++.++
T Consensus 86 ~~~~~~~ 92 (256)
T PRK12748 86 FYAVSER 92 (256)
T ss_pred HHHHHHh
Confidence 5555544
No 390
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=52.27 E-value=1.5e+02 Score=25.19 Aligned_cols=125 Identities=18% Similarity=0.095 Sum_probs=70.4
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHc---CCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHH
Q 025563 90 GIGLAFIAALRGYKLIIVMPSIASMERRIVLRAL---GAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPK 166 (251)
Q Consensus 90 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~---Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~ 166 (251)
|.+.|.+.+++|+++.++-++......+..+..+ |.+|...-+... +....+.+.+..-....+..|.+-...
T Consensus 86 G~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~---r~~l~~~L~~~G~~v~~~~~Y~~~~~~- 161 (248)
T COG1587 86 GEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGG---REVLEEKLEERGAEVREVEVYRTEPPP- 161 (248)
T ss_pred cHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCc---hHHHHHHHHhCCCEEEEEeeeeecCCC-
Confidence 4778888999999988776656667778888777 577766655421 212223333322123344444332222
Q ss_pred HHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCC----CcEEEEEeCCCCcc
Q 025563 167 IHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNP----NIKVYGVEPTESAM 223 (251)
Q Consensus 167 ~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~----~~~vigVep~~s~~ 223 (251)
+. ...++.......+|.|+...+ .++-.+...+...+. +.+++.+-|.-+..
T Consensus 162 --~~-~~~~~~~~~~~~~d~v~ftS~--~~v~~~~~~~~~~~~~~~~~~~v~~IG~~Ta~~ 217 (248)
T COG1587 162 --LD-EATLIELLKLGEVDAVVFTSS--SAVRALLALAPESGIEFLERKRVASIGPRTAET 217 (248)
T ss_pred --cc-HHHHHHHHHhCCCCEEEEeCH--HHHHHHHHHccccchhHhhCceEEEecHHHHHH
Confidence 22 111111111256898887754 445566666665554 37888886665543
No 391
>PRK06482 short chain dehydrogenase; Provisional
Probab=52.26 E-value=1.1e+02 Score=25.97 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=26.5
Q ss_pred eEEEEeccChHHHHHHHHHHHCCCcEEEEecC
Q 025563 79 SVLIETTGGNTGIGLAFIAALRGYKLIIVMPS 110 (251)
Q Consensus 79 ~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~ 110 (251)
+.+|+..+|.-|.++|......|.+++++...
T Consensus 4 ~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~ 35 (276)
T PRK06482 4 TWFITGASSGFGRGMTERLLARGDRVAATVRR 35 (276)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45888888999999999988899988776643
No 392
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=52.16 E-value=76 Score=28.64 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=33.4
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
++..++|..+..++..+...+-.-.|++|.-.-......++..|++++.++-
T Consensus 49 ~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~ 100 (375)
T PRK11706 49 VLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDI 100 (375)
T ss_pred EEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 6666677776655544332222345666776666777778888888888864
No 393
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=52.08 E-value=71 Score=28.50 Aligned_cols=50 Identities=20% Similarity=0.113 Sum_probs=33.2
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
|+..+++..+..++..+-.-| . .|+++.-.-..-...++.+|++++.++.
T Consensus 77 I~it~G~~~~i~~~~~~l~~g-~-~vlv~~P~y~~~~~~~~~~g~~~~~v~~ 126 (360)
T PRK07392 77 ILPGNGAAELLTWAGRELAQL-R-AVYLITPAFGDYRRALRAFGATVKELPL 126 (360)
T ss_pred EEECCCHHHHHHHHHHHhCCC-C-eEEEECCCcHHHHHHHHHcCCeEEEEec
Confidence 777777777776665442223 3 4555555555667778889999999865
No 394
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.00 E-value=1.8e+02 Score=26.28 Aligned_cols=116 Identities=18% Similarity=0.176 Sum_probs=79.1
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhc
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~ 149 (251)
...++++|.+ ++...-|--|.|++.-|+..|-.=+|=+ +.++.|.+..+.+||.=..-+
T Consensus 186 ~~Akv~~Gst-vAVfGLG~VGLav~~Gaka~GAsrIIgv--DiN~~Kf~~ak~fGaTe~iNp------------------ 244 (375)
T KOG0022|consen 186 NTAKVEPGST-VAVFGLGGVGLAVAMGAKAAGASRIIGV--DINPDKFEKAKEFGATEFINP------------------ 244 (375)
T ss_pred hhcccCCCCE-EEEEecchHHHHHHHhHHhcCcccEEEE--ecCHHHHHHHHhcCcceecCh------------------
Confidence 3445667777 8999999999999999999998766655 566788888888877422211
Q ss_pred CCCeEecCCCCCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCc
Q 025563 150 TPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESA 222 (251)
Q Consensus 150 ~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~ 222 (251)
-+-.. .+-.=|.|..++.+|+=|=++|.=.++.-....-+.-+-..=++||.+.+..
T Consensus 245 ---------~d~~~-------~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~ 301 (375)
T KOG0022|consen 245 ---------KDLKK-------PIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQE 301 (375)
T ss_pred ---------hhccc-------cHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcc
Confidence 10000 1111122333466889998998888877666666666667888999888875
No 395
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=51.93 E-value=28 Score=35.91 Aligned_cols=52 Identities=15% Similarity=0.301 Sum_probs=0.0
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEE------------------ecCCCcHHHHHHHHHcCCEEEE
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIV------------------MPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~iv------------------vp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
|+. |+.-++|-.|.+.|...++.|++++|| +|+..-...++.++.+|.+++.
T Consensus 306 gkk-VaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~ 375 (944)
T PRK12779 306 KPP-IAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVK 375 (944)
T ss_pred CCe-EEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEE
No 396
>PRK07060 short chain dehydrogenase; Provisional
Probab=51.89 E-value=1.3e+02 Score=24.59 Aligned_cols=53 Identities=23% Similarity=0.204 Sum_probs=36.5
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHH-HHHcCCEEEEeCCC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIV-LRALGAEVYLADQA 133 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~-~~~~Ga~v~~v~~~ 133 (251)
++.+|+..+|..|..++....+.|.+++++... ..+.+. .+..+.+++.++-.
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~---~~~~~~~~~~~~~~~~~~D~~ 63 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARN---AAALDRLAGETGCEPLRLDVG 63 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCeEEEecCC
Confidence 455788888999999999999999986665432 223322 34457777777654
No 397
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=51.80 E-value=1.6e+02 Score=25.59 Aligned_cols=55 Identities=31% Similarity=0.399 Sum_probs=37.3
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEV 127 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 127 (251)
+...+.+|+..+|. .+|-.|.+++..|+.+|.+.++++. .++.+.+.++.+|++-
T Consensus 159 ~~~~~~~g~~VlV~-g~g~vg~~~~~la~~~g~~~v~~~~--~s~~~~~~~~~~g~~~ 213 (343)
T cd08235 159 RKAGIKPGDTVLVI-GAGPIGLLHAMLAKASGARKVIVSD--LNEFRLEFAKKLGADY 213 (343)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHhCCcE
Confidence 33456677775666 5688999999999999999444442 2345566667778743
No 398
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.66 E-value=1.4e+02 Score=24.66 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=27.0
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPS 110 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~ 110 (251)
++.+|+.++|.-|.++|..-...|.++++....
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~ 38 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGARVVVNYHQ 38 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCC
Confidence 455888889999999999988899988775543
No 399
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=51.65 E-value=1.5e+02 Score=25.01 Aligned_cols=46 Identities=11% Similarity=0.033 Sum_probs=31.1
Q ss_pred HHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCC-CcEEEEEeCCC
Q 025563 172 TGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNP-NIKVYGVEPTE 220 (251)
Q Consensus 172 ~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~-~~~vigVep~~ 220 (251)
...+++++- +++|+|||.-. .++.|+..++++.+. ++.|+|.+-..
T Consensus 173 ~~~~~l~~~-~~~~ai~~~nd--~~a~g~~~al~~~g~~di~vvgfd~~~ 219 (272)
T cd06313 173 IWETWLTKY-PQLDGAFCHND--SMALAAYQIMKAAGRTKIVIGGVDGDP 219 (272)
T ss_pred HHHHHHHhC-CCCCEEEECCC--cHHHHHHHHHHHcCCCceEEEeecCCH
Confidence 334444432 45888887543 456688999988764 78899988664
No 400
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=51.59 E-value=95 Score=29.03 Aligned_cols=48 Identities=21% Similarity=0.146 Sum_probs=32.8
Q ss_pred CCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEE
Q 025563 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEV 127 (251)
Q Consensus 76 ~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 127 (251)
.|++ ++..+.|+-|+.+|..++.+|.+++++ ..+ +.+.......|.++
T Consensus 211 ~Gk~-VlViG~G~IG~~vA~~lr~~Ga~ViV~-d~d--p~ra~~A~~~G~~v 258 (425)
T PRK05476 211 AGKV-VVVAGYGDVGKGCAQRLRGLGARVIVT-EVD--PICALQAAMDGFRV 258 (425)
T ss_pred CCCE-EEEECCCHHHHHHHHHHHhCCCEEEEE-cCC--chhhHHHHhcCCEe
Confidence 5565 888888999999999999999975443 322 23333444456653
No 401
>PRK07775 short chain dehydrogenase; Provisional
Probab=51.52 E-value=1.5e+02 Score=25.11 Aligned_cols=71 Identities=14% Similarity=0.099 Sum_probs=42.2
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILS 148 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~ 148 (251)
++.+|+..+|.-|.+++......|.+++++...... ......++..|.++..+..+ .+.++..+...+..+
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEE 83 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 355788888999999999988899987666533211 11223355567777654332 234444444444433
No 402
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=51.51 E-value=1.6e+02 Score=25.28 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=35.3
Q ss_pred HHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCC
Q 025563 168 HYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPT 219 (251)
Q Consensus 168 g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~ 219 (251)
|.+.+-.++.+....++|.+|+.+|==|++-++..++-. +.||||-..
T Consensus 157 GiHRLl~~l~r~~~~~~~~lIVvAGMEGaLPsvvagLvD----~PVIavPTs 204 (254)
T COG1691 157 GIHRLLSALKRLKIEDADVLIVVAGMEGALPSVVAGLVD----VPVIAVPTS 204 (254)
T ss_pred hHHhhhhHHHHHHhhCCCeEEEEcccccchHHHHHhccC----CCeEecccc
Confidence 444555555444446789999999988888898888864 889998654
No 403
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=51.51 E-value=90 Score=26.18 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=20.7
Q ss_pred ChHHHHHHHHHHHCCCcEEEEecCC
Q 025563 87 GNTGIGLAFIAALRGYKLIIVMPSI 111 (251)
Q Consensus 87 GN~g~alA~~a~~~G~~~~ivvp~~ 111 (251)
|.+-..||.++++.|+++.+++...
T Consensus 53 GC~P~GLAlAA~rrG~~vev~~~~~ 77 (207)
T PF11814_consen 53 GCGPFGLALAAARRGFKVEVWVSTD 77 (207)
T ss_pred CcChHHHHHHHHHcCCceEEEECCC
Confidence 6677778888899999999999654
No 404
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=51.40 E-value=1.6e+02 Score=25.28 Aligned_cols=55 Identities=29% Similarity=0.448 Sum_probs=38.5
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEV 127 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 127 (251)
+...++++...+|...+|..|.+++..|+.+|.+++.+.+ .+.+.+.++.+|++-
T Consensus 136 ~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 190 (324)
T cd08244 136 DLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAG---GPAKTALVRALGADV 190 (324)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCE
Confidence 3455666777666666799999999999999998544432 244556667788743
No 405
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=51.40 E-value=23 Score=27.51 Aligned_cols=31 Identities=32% Similarity=0.479 Sum_probs=26.0
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSI 111 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~ 111 (251)
++..++|.-+.+++..++.+|++++++=|+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 4667889999999999999999999998764
No 406
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=51.36 E-value=1.6e+02 Score=27.02 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=45.0
Q ss_pred EEEeccChHHHHHHHHHHH-CCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCC-ChHHHHHHHHHHhhcCCCeEecC-
Q 025563 81 LIETTGGNTGIGLAFIAAL-RGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG-GFEGILRKGEEILSNTPNGFMFR- 157 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~-~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~-~~~~~~~~a~~~~~~~~~~~~~~- 157 (251)
|+..+++..+..++..+-. -| + .|+++.-.-..-...++.+|++++.++-.. +++ .+..++..++.+..+|+.
T Consensus 144 Iiit~G~~~al~~~~~~l~~pg-d-~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g~~--~~~l~~~~~~~~k~i~~~p 219 (431)
T PRK15481 144 IDLTSGAIDAIERLLCAHLLPG-D-SVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQ--PEKLERALAQGARAVILTP 219 (431)
T ss_pred EEEecCcHHHHHHHHHHhCCCC-C-EEEEeCCCcHHHHHHHHHcCCeEEeeccCCCCCC--HHHHHHHHhcCCCEEEECC
Confidence 7777778887776655432 23 2 344444444566777888999999986431 221 222233333344667765
Q ss_pred CCCCCc
Q 025563 158 QFENPA 163 (251)
Q Consensus 158 ~~~n~~ 163 (251)
..+||.
T Consensus 220 ~p~NPT 225 (431)
T PRK15481 220 RAHNPT 225 (431)
T ss_pred CCCCCC
Confidence 344554
No 407
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.22 E-value=1.5e+02 Score=24.99 Aligned_cols=71 Identities=21% Similarity=0.157 Sum_probs=41.2
Q ss_pred CeEEEEec--cChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHH-cCC-EEEEeCCCCChHHHHHHHHHHhhc
Q 025563 78 KSVLIETT--GGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRA-LGA-EVYLADQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~s--sGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~-~Ga-~v~~v~~~~~~~~~~~~a~~~~~~ 149 (251)
++.+|+.. ++--|+++|....+.|.++++..........++.+.. .|. ..+.++-. +.++..+...+..++
T Consensus 7 k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-~~~~v~~~~~~~~~~ 81 (261)
T PRK08690 7 KKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVA-SDDEINQVFADLGKH 81 (261)
T ss_pred cEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCC-CHHHHHHHHHHHHHH
Confidence 44466663 4578899999989999988775432222334444432 343 33445543 555665555555554
No 408
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=51.18 E-value=1.4e+02 Score=27.42 Aligned_cols=93 Identities=13% Similarity=0.110 Sum_probs=62.4
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcCCC-eEecC
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNTPN-GFMFR 157 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~~~-~~~~~ 157 (251)
..+..++|..+..+|+.+-..|=--.|++|.-+.....+.+...||+.++||-. .++.=..+..++......+ -+.++
T Consensus 51 ~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVh 130 (374)
T COG0399 51 YAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVH 130 (374)
T ss_pred eEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEeh
Confidence 378888888888888875457766788999998999999999999999999854 2232112222222222223 35677
Q ss_pred CCCCCchHHHHHhhHH
Q 025563 158 QFENPANPKIHYETTG 173 (251)
Q Consensus 158 ~~~n~~~~~~g~~t~~ 173 (251)
-++++...+ ....++
T Consensus 131 l~G~~~dm~-~i~~la 145 (374)
T COG0399 131 LAGQPCDMD-AIMALA 145 (374)
T ss_pred hccCCCCHH-HHHHHH
Confidence 778887775 444444
No 409
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=51.15 E-value=57 Score=26.36 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=24.4
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPS 110 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~ 110 (251)
|..-++|..|+++|..+...|++++++-+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 555677999999999999999999998654
No 410
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=51.06 E-value=1.8e+02 Score=26.23 Aligned_cols=19 Identities=32% Similarity=0.679 Sum_probs=12.1
Q ss_pred CCCEEEEecCchhHHHHHHHH
Q 025563 183 DVDILVAGIGTGGTVTGSGRF 203 (251)
Q Consensus 183 ~~d~vv~~vGtGg~~~Gi~~~ 203 (251)
++| +|+++|+|+.+ -++++
T Consensus 83 ~~D-~IIavGGGSvi-D~aK~ 101 (357)
T cd08181 83 NAD-FVIGIGGGSPL-DAAKA 101 (357)
T ss_pred CCC-EEEEeCCchHH-HHHHH
Confidence 344 67888888865 44554
No 411
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=50.95 E-value=1.5e+02 Score=25.38 Aligned_cols=49 Identities=27% Similarity=0.295 Sum_probs=30.1
Q ss_pred eEEEEeccChHH---HHHHHHHHHCCCcEEEEecCCCc----HHHHHHHHHcCCEE
Q 025563 79 SVLIETTGGNTG---IGLAFIAALRGYKLIIVMPSIAS----MERRIVLRALGAEV 127 (251)
Q Consensus 79 ~~vv~~ssGN~g---~alA~~a~~~G~~~~ivvp~~~~----~~~~~~~~~~Ga~v 127 (251)
+.+|.++.||.| .++|...+..|+++.+|++...+ ....+.++..|..+
T Consensus 62 ~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 117 (246)
T PLN03050 62 RVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYPKQSSKPHYENLVTQCEDLGIPF 117 (246)
T ss_pred eEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEcCCCChHHHHHHHHHHHHcCCCE
Confidence 346667777654 45555556679999999865332 22344566677554
No 412
>PRK07324 transaminase; Validated
Probab=50.93 E-value=1.3e+02 Score=26.98 Aligned_cols=82 Identities=16% Similarity=0.097 Sum_probs=42.4
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCC--ChHHHHHHHHHHhhcCCCeEecCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG--GFEGILRKGEEILSNTPNGFMFRQ 158 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~--~~~~~~~~a~~~~~~~~~~~~~~~ 158 (251)
|+..+++..+..++..+- ++-.-.|+++...-..-...++.+|++++.++-.. ++.-..+...+........++++.
T Consensus 83 vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~ 161 (373)
T PRK07324 83 ILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINN 161 (373)
T ss_pred EEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeC
Confidence 666666666666655443 22223344444333444567788999999887421 121011222333333346666654
Q ss_pred CCCCc
Q 025563 159 FENPA 163 (251)
Q Consensus 159 ~~n~~ 163 (251)
.+||.
T Consensus 162 p~NPt 166 (373)
T PRK07324 162 ANNPT 166 (373)
T ss_pred CCCCC
Confidence 45554
No 413
>PRK07832 short chain dehydrogenase; Provisional
Probab=50.90 E-value=1.1e+02 Score=25.81 Aligned_cols=69 Identities=17% Similarity=0.238 Sum_probs=41.1
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEE---EEeCCCCChHHHHHHHHHHhhc
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEV---YLADQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v---~~v~~~~~~~~~~~~a~~~~~~ 149 (251)
.+|+.++|..|.++|....+.|.+++++...... ....+.++..|+++ +.++-. +.++..+...+..++
T Consensus 3 vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~~ 75 (272)
T PRK07832 3 CFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDIS-DYDAVAAFAADIHAA 75 (272)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCC-CHHHHHHHHHHHHHh
Confidence 4788888999999999999999986665433211 12234455566653 234433 444444444444443
No 414
>PRK07201 short chain dehydrogenase; Provisional
Probab=50.90 E-value=97 Score=30.09 Aligned_cols=74 Identities=22% Similarity=0.184 Sum_probs=45.3
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
+++.+|+..+|.-|.++|..-.+.|.+++++...... ....+.++..|.+++.+..+ .+.++..+..++..++.
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 446 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEH 446 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 4566888888999999999888889987776543211 22234455567666554321 24444444455554443
No 415
>PRK08264 short chain dehydrogenase; Validated
Probab=50.85 E-value=87 Score=25.69 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=26.3
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCC-cEEEEec
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGY-KLIIVMP 109 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~-~~~ivvp 109 (251)
++.+|+..+|.-|.++|....+.|. +++++..
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r 39 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAAR 39 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEec
Confidence 4558888899999999999999998 7666553
No 416
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=50.83 E-value=1.7e+02 Score=25.56 Aligned_cols=52 Identities=27% Similarity=0.408 Sum_probs=36.7
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCE
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAE 126 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 126 (251)
...+.++++.+|.. .|..|.++...++.+|++++++.. +..+.+.++.+|++
T Consensus 160 ~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~ 211 (345)
T cd08260 160 QARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDI---DDDKLELARELGAV 211 (345)
T ss_pred ccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHhCCC
Confidence 34455667756665 789999999999999998655533 34566666778873
No 417
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=50.43 E-value=1.4e+02 Score=24.85 Aligned_cols=69 Identities=16% Similarity=0.148 Sum_probs=40.2
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcC-CEEEEeCCCCChHHHHHHHHHHhhc
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALG-AEVYLADQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~G-a~v~~v~~~~~~~~~~~~a~~~~~~ 149 (251)
.+|+.++|.-|+++|....+.|.++++....... ....+.++..+ ...+.++-. +.++..+..++..++
T Consensus 3 vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~-d~~~~~~~~~~~~~~ 73 (259)
T PRK08340 3 VLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLS-DKDDLKNLVKEAWEL 73 (259)
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCC-CHHHHHHHHHHHHHh
Confidence 4788888999999999999999986665433211 12233344444 333444433 444444444554443
No 418
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.43 E-value=1.5e+02 Score=24.79 Aligned_cols=72 Identities=10% Similarity=0.015 Sum_probs=41.9
Q ss_pred CeEEEEecc--ChHHHHHHHHHHHCCCcEEEEec----CCC----cH----HHHHHHHHcCCEEEEeCCC-CChHHHHHH
Q 025563 78 KSVLIETTG--GNTGIGLAFIAALRGYKLIIVMP----SIA----SM----ERRIVLRALGAEVYLADQA-GGFEGILRK 142 (251)
Q Consensus 78 ~~~vv~~ss--GN~g~alA~~a~~~G~~~~ivvp----~~~----~~----~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~ 142 (251)
++.+|+..+ +.-|.++|......|.++++... ... .. ...+.++..|.+++.+..+ .+.++..+.
T Consensus 7 k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~~~ 86 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPKEL 86 (256)
T ss_pred cEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 454666655 47999999999999998777531 110 11 2234466778887655432 233444444
Q ss_pred HHHHhhc
Q 025563 143 GEEILSN 149 (251)
Q Consensus 143 a~~~~~~ 149 (251)
..+..++
T Consensus 87 ~~~~~~~ 93 (256)
T PRK12859 87 LNKVTEQ 93 (256)
T ss_pred HHHHHHH
Confidence 4555444
No 419
>PRK12747 short chain dehydrogenase; Provisional
Probab=50.40 E-value=1.1e+02 Score=25.50 Aligned_cols=53 Identities=17% Similarity=0.138 Sum_probs=35.4
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC--cHHHHHHHHHcCCEEEEe
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA--SMERRIVLRALGAEVYLA 130 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~v 130 (251)
++.+|+.++|--|.++|..-.+.|.++++...... .......++..|.++..+
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSI 59 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEE
Confidence 45688888899999999999999998777542221 122334455556555444
No 420
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=50.19 E-value=92 Score=29.43 Aligned_cols=49 Identities=27% Similarity=0.156 Sum_probs=30.2
Q ss_pred eEEEEeccChHHH---HHHHHHHHCCCcEEEEecCCCc-H---HHHHHHHHcCCEE
Q 025563 79 SVLIETTGGNTGI---GLAFIAALRGYKLIIVMPSIAS-M---ERRIVLRALGAEV 127 (251)
Q Consensus 79 ~~vv~~ssGN~g~---alA~~a~~~G~~~~ivvp~~~~-~---~~~~~~~~~Ga~v 127 (251)
..+|.++.||.|. ++|...+..|+++.|+++.... . ...++++..|..+
T Consensus 61 ~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 116 (462)
T PLN03049 61 RVLALCGPGNNGGDGLVAARHLHHFGYKPSICYPKRTDKPLYNGLVTQLESLSVPF 116 (462)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCceEEEEECCCCCHHHHHHHHHHHHcCCce
Confidence 4467777777654 4555556679999999864322 1 2344556666444
No 421
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=49.74 E-value=99 Score=27.71 Aligned_cols=82 Identities=17% Similarity=0.037 Sum_probs=41.2
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFE 160 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 160 (251)
|+..+++..+..++..+- ..-.-.|+++.-.-..-...++..|++++.++...++.-..+...+..++....+++....
T Consensus 91 i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~ 169 (371)
T PRK05166 91 IILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNPS 169 (371)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCCC
Confidence 666666666655444332 2222234455444445566778899999988753221111122222323334666664434
Q ss_pred CCc
Q 025563 161 NPA 163 (251)
Q Consensus 161 n~~ 163 (251)
||.
T Consensus 170 NPt 172 (371)
T PRK05166 170 NPV 172 (371)
T ss_pred CCC
Confidence 443
No 422
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=49.60 E-value=1.1e+02 Score=26.64 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=34.2
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEE
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEV 127 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 127 (251)
|++.+|...+|..|.+++..|+.+|.++++.... .+.+.++.+|++-
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~g~~~ 209 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST----DAIPLVKSLGADD 209 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc----chHHHHHHhCCce
Confidence 6775666657999999999999999986554432 3556677788743
No 423
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=49.45 E-value=1.9e+02 Score=25.75 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=25.7
Q ss_pred HHHHhhhhCC-CCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCC
Q 025563 173 GPEIWKDSGG-DVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTE 220 (251)
Q Consensus 173 ~~EI~~q~~~-~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~ 220 (251)
..++.+++.. ++| +|+++|+|... =++++... ...++++.|-...
T Consensus 67 v~~~~~~~~~~~~d-~iIaiGGGs~~-D~aK~~a~-~~~~p~i~iPTT~ 112 (339)
T cd08173 67 VEKVESSARDIGAD-FVIGVGGGRVI-DVAKVAAY-KLGIPFISVPTAA 112 (339)
T ss_pred HHHHHHHhhhcCCC-EEEEeCCchHH-HHHHHHHH-hcCCCEEEecCcc
Confidence 3445555432 355 77888887753 55555542 2346777776553
No 424
>PRK13243 glyoxylate reductase; Reviewed
Probab=49.45 E-value=1.3e+02 Score=27.05 Aligned_cols=105 Identities=22% Similarity=0.223 Sum_probs=62.7
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEec
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMF 156 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~ 156 (251)
|++ +..-+.|+-|+++|..++.+|+++.++-+.. ... ....+|++. . ++++ +.++. +.+.+
T Consensus 150 gkt-vgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~-~~~---~~~~~~~~~--~----~l~e-------ll~~a-DiV~l 210 (333)
T PRK13243 150 GKT-IGIIGFGRIGQAVARRAKGFGMRILYYSRTR-KPE---AEKELGAEY--R----PLEE-------LLRES-DFVSL 210 (333)
T ss_pred CCE-EEEECcCHHHHHHHHHHHHCCCEEEEECCCC-Chh---hHHHcCCEe--c----CHHH-------HHhhC-CEEEE
Confidence 444 7777889999999999999999876654432 221 123345421 1 2222 23333 45554
Q ss_pred CCCCCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHH--HHHHHHHh
Q 025563 157 RQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVT--GSGRFLKE 206 (251)
Q Consensus 157 ~~~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~--Gi~~~~~~ 206 (251)
.- |...+ -..-+..|.++++ +++.+++-+|.|+..- .+..++++
T Consensus 211 ~l---P~t~~-T~~~i~~~~~~~m--k~ga~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 211 HV---PLTKE-TYHMINEERLKLM--KPTAILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred eC---CCChH-HhhccCHHHHhcC--CCCeEEEECcCchhcCHHHHHHHHHc
Confidence 32 22222 2344566788877 3689999999999763 44445543
No 425
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=49.44 E-value=1.4e+02 Score=26.24 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=25.9
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSI 111 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~ 111 (251)
+++ ++.-++|-.++|++++....|++-+.++.++
T Consensus 124 ~k~-vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 124 GKT-MVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred CCE-EEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 344 6666678889999999999999777666555
No 426
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=49.31 E-value=88 Score=28.20 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=38.3
Q ss_pred cCCCCCCCeEEEEeccC--hHHHHHHHHHHHCCCcEEEEecCCC--cHHHHHH----HHHcCCEEEEeC
Q 025563 71 KGLITPGKSVLIETTGG--NTGIGLAFIAALRGYKLIIVMPSIA--SMERRIV----LRALGAEVYLAD 131 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssG--N~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~----~~~~Ga~v~~v~ 131 (251)
.|.++ |.+ |+..+.+ |.+++++.+++++|++++++.|+.. ++..++. .+..|.++...+
T Consensus 150 ~g~l~-g~~-va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 150 FGPLK-GLK-LAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE 216 (331)
T ss_pred hCCCC-CCE-EEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence 35443 344 5544554 8999999999999999999998864 2223322 344677766554
No 427
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=49.30 E-value=1.6e+02 Score=25.07 Aligned_cols=49 Identities=35% Similarity=0.413 Sum_probs=36.8
Q ss_pred CCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEE
Q 025563 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEV 127 (251)
Q Consensus 76 ~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 127 (251)
+|++.+|...+|..|.+++..|+.+|.+.+...+ ++.+.+.++.+|+..
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 180 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAAE 180 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcE
Confidence 3677666666699999999999999997544432 356778888888853
No 428
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=49.30 E-value=58 Score=24.13 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=32.4
Q ss_pred HHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCC
Q 025563 172 TGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTES 221 (251)
Q Consensus 172 ~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s 221 (251)
.+.++.++++ ..+||+.+-+|.++ +.+.+..|+..|++|-+...
T Consensus 7 aa~~~A~~~~--ak~Ivv~T~sG~ta----~~isk~RP~~pIiavt~~~~ 50 (117)
T PF02887_consen 7 AAVELAEDLN--AKAIVVFTESGRTA----RLISKYRPKVPIIAVTPNES 50 (117)
T ss_dssp HHHHHHHHHT--ESEEEEE-SSSHHH----HHHHHT-TSSEEEEEESSHH
T ss_pred HHHHHHHhcC--CCEEEEECCCchHH----HHHHhhCCCCeEEEEcCcHH
Confidence 3557777773 67999999999985 55555678899999988765
No 429
>PLN02583 cinnamoyl-CoA reductase
Probab=49.22 E-value=1.6e+02 Score=25.49 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=28.2
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPS 110 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~ 110 (251)
++.+|+..+|-.|.+++......|.++++++..
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 456888888999999999999999999887754
No 430
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=49.16 E-value=80 Score=29.39 Aligned_cols=54 Identities=30% Similarity=0.239 Sum_probs=39.9
Q ss_pred CCCeEEEEeccChHHHHHHHHHHHCCC-cEEEEecCC-----CcHHHHHHHHHcCCEEEEe
Q 025563 76 PGKSVLIETTGGNTGIGLAFIAALRGY-KLIIVMPSI-----ASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 76 ~g~~~vv~~ssGN~g~alA~~a~~~G~-~~~ivvp~~-----~~~~~~~~~~~~Ga~v~~v 130 (251)
.+++ ++.-++||.|.-+|....++|. +++++.... ......+.++..|.+++.-
T Consensus 272 ~g~~-VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~ 331 (457)
T PRK11749 272 VGKR-VVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWL 331 (457)
T ss_pred CCCe-EEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEec
Confidence 3455 7888899999999999999998 677776432 1344566777888887754
No 431
>PRK06197 short chain dehydrogenase; Provisional
Probab=49.16 E-value=1.4e+02 Score=25.73 Aligned_cols=71 Identities=13% Similarity=0.208 Sum_probs=41.3
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcH-HHHHHHHHc--CCEEE--EeCCCCChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASM-ERRIVLRAL--GAEVY--LADQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~~~~~--Ga~v~--~v~~~~~~~~~~~~a~~~~~~ 149 (251)
++.+|+.++|--|.++|..-.+.|.+++++....... ...+.++.. +.++. .++-. +.++..+.+.++.++
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~-d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLT-SLASVRAAADALRAA 92 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCC-CHHHHHHHHHHHHhh
Confidence 4568888889999999998888899877765432211 112333322 34444 44433 444555555555443
No 432
>PRK05826 pyruvate kinase; Provisional
Probab=49.01 E-value=2.4e+02 Score=26.73 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=69.2
Q ss_pred HHHHHHHHHCCCcEEEEe-----------cCCCcHHHHHHHHHcCCEEEEeCCC---CCh-HHHHHHHHHHhhcCCCeEe
Q 025563 91 IGLAFIAALRGYKLIIVM-----------PSIASMERRIVLRALGAEVYLADQA---GGF-EGILRKGEEILSNTPNGFM 155 (251)
Q Consensus 91 ~alA~~a~~~G~~~~ivv-----------p~~~~~~~~~~~~~~Ga~v~~v~~~---~~~-~~~~~~a~~~~~~~~~~~~ 155 (251)
.-+...|++.|.++.+-. |......-+...-..|++-+..++. +.| .++.+...+.+++....++
T Consensus 262 k~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~ 341 (465)
T PRK05826 262 KKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFS 341 (465)
T ss_pred HHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccc
Confidence 345566888999877641 2222222333445569988877653 122 3555544444332211111
Q ss_pred c----CCCCC--CchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCC
Q 025563 156 F----RQFEN--PANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTES 221 (251)
Q Consensus 156 ~----~~~~n--~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s 221 (251)
. ..... ....+ .....+.++.++++ +.+.||+.+-+|.++- .+....|.+.|+++.+...
T Consensus 342 ~~~~~~~~~~~~~~~~~-~ia~aa~~~a~~l~-~a~~Ivv~T~sG~ta~----~isk~RP~~pI~~~t~~~~ 407 (465)
T PRK05826 342 INLSKHRLDRQFDRIDE-AIAMSAMYAANHLK-GVKAIVALTESGRTAR----LISRFRPGAPIFAVTRDEK 407 (465)
T ss_pred hhhhhhhccccccchHH-HHHHHHHHHHHhcC-CCCEEEEECCCcHHHH----HHHhhCCCCCEEEEcCCHH
Confidence 1 00000 11122 44555567777763 2578999999999854 4445578899999987754
No 433
>PRK09291 short chain dehydrogenase; Provisional
Probab=48.81 E-value=81 Score=26.18 Aligned_cols=53 Identities=21% Similarity=0.250 Sum_probs=34.9
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcH-HHHHHHHHcCCEEEEe
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASM-ERRIVLRALGAEVYLA 130 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~~~~~Ga~v~~v 130 (251)
++.+|+..+|..|.+++......|.+++++....... ...+..+..+.++..+
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~ 56 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVE 56 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEE
Confidence 3458888999999999999999999988776542211 1222334455554443
No 434
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=48.63 E-value=1e+02 Score=25.72 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=41.2
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHH
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEE 145 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~ 145 (251)
.||.+.+||. +++..+-.++|...+|. .+ +.. ...|+-+..|+.+.+.++++..++
T Consensus 5 ~IIDyg~GNL-~Sv~~Aler~G~~~~vs--~d--~~~-----i~~AD~liLPGVGaf~~am~~L~~ 60 (204)
T COG0118 5 AIIDYGSGNL-RSVKKALERLGAEVVVS--RD--PEE-----ILKADKLILPGVGAFGAAMANLRE 60 (204)
T ss_pred EEEEcCcchH-HHHHHHHHHcCCeeEEe--cC--HHH-----HhhCCEEEecCCCCHHHHHHHHHh
Confidence 4889999998 78889899999665553 22 222 245788888988889888876544
No 435
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=48.46 E-value=1.9e+02 Score=27.57 Aligned_cols=69 Identities=22% Similarity=0.205 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 56 VKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 56 ~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
.++..+...+..|.+-+. +..|+...+|.+++.++.+ +-..+.+++.+.. ..-.+..-.||..-+.++.
T Consensus 359 ~~~aia~sAv~~A~~l~a----kaIVv~T~SG~TA~~lS~~--RP~~pIiavT~~~--~~~r~l~l~~GV~p~~~~~ 427 (480)
T cd00288 359 TTEAVAMSAVRAAFELGA----KAIVVLTTSGRTARLVSKY--RPNAPIIAVTRNE--QTARQLHLYRGVYPVLFEE 427 (480)
T ss_pred hHHHHHHHHHHHHHhcCC----CEEEEECCCcHHHHHHHhh--CCCCCEEEEcCCH--HHhhheeeccCcEEEEecc
Confidence 455555555555554443 3334444557777665554 3446666665443 1222233345777666654
No 436
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=48.25 E-value=73 Score=28.01 Aligned_cols=76 Identities=17% Similarity=0.038 Sum_probs=45.7
Q ss_pred cccCCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC
Q 025563 36 VDGCVA-RIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA 112 (251)
Q Consensus 36 ~~~~g~-~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~ 112 (251)
++..|. +-.++.|+..-.|-+.|-............+....++. ++..++|-.++|++++.+..|.+-+.++.++.
T Consensus 84 A~~iGAVNTl~~~~~g~l~G~NTD~~G~~~~L~~~~~~~~~~~~~-vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~ 160 (283)
T COG0169 84 ARLIGAVNTLVREDDGKLRGYNTDGIGFLRALKEFGLPVDVTGKR-VLILGAGGAARAVAFALAEAGAKRITVVNRTR 160 (283)
T ss_pred HHHhCCceEEEEccCCEEEEEcCCHHHHHHHHHhcCCCcccCCCE-EEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 344565 55555554555677777643332222111112223455 88888899999999999999986555555543
No 437
>PRK08912 hypothetical protein; Provisional
Probab=48.21 E-value=2.1e+02 Score=25.74 Aligned_cols=78 Identities=17% Similarity=0.113 Sum_probs=42.8
Q ss_pred CCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 52 PCCSVKDRIALSMIKDAEEKGL-ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 52 ptGS~K~R~a~~~l~~a~~~g~-~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
+.|....|.+...... ...|. ..+... |+..+++..+..++..+.. +-.-.|+++.-.-..-...++.+|++++.+
T Consensus 62 ~~G~~~lr~~ia~~~~-~~~g~~~~~~~~-i~~t~G~~~al~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~ 138 (387)
T PRK08912 62 MMGLPELRQAVAAHYA-RFQGLDLDPETE-VMVTSGATEALAAALLALV-EPGDEVVLFQPLYDAYLPLIRRAGGVPRLV 138 (387)
T ss_pred CCCcHHHHHHHHHHHH-HHhCCCCCCccc-EEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEE
Confidence 4566666654443221 11232 233212 6777777777765555432 222345555544445566778999999887
Q ss_pred CC
Q 025563 131 DQ 132 (251)
Q Consensus 131 ~~ 132 (251)
+-
T Consensus 139 ~~ 140 (387)
T PRK08912 139 RL 140 (387)
T ss_pred ec
Confidence 64
No 438
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=48.18 E-value=1.8e+02 Score=24.99 Aligned_cols=54 Identities=28% Similarity=0.394 Sum_probs=37.5
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
..+.+|.+.+|. .+|..|.+++..|+..|.++++..+ +..+.+.++.+|++-+.
T Consensus 156 ~~~~~g~~vli~-g~g~~g~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 209 (336)
T cd08276 156 GPLKPGDTVLVQ-GTGGVSLFALQFAKAAGARVIATSS---SDEKLERAKALGADHVI 209 (336)
T ss_pred cCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 445667774554 6788999999999999998555432 34566667777875543
No 439
>PRK12746 short chain dehydrogenase; Provisional
Probab=48.18 E-value=1.6e+02 Score=24.38 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=41.0
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcH--HHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASM--ERRIVLRALGAEVYLADQA-GGFEGILRKGEEIL 147 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~ 147 (251)
++.+|+.++|--|.++|....+.|.++++...+...+ .....+...+.++..+..+ .+.++..+..++..
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~ 79 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLK 79 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHH
Confidence 4568888889999999999888999877765433211 1223344445565444321 23444444344443
No 440
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=48.13 E-value=97 Score=29.04 Aligned_cols=50 Identities=20% Similarity=0.136 Sum_probs=38.3
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCC--------------c----HHHHHHHHHcCCEEEE
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA--------------S----MERRIVLRALGAEVYL 129 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~--------------~----~~~~~~~~~~Ga~v~~ 129 (251)
.|+.-++|-.|.+.|...++.|.++++|-.... + ...+++++.+|.+++.
T Consensus 145 ~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 145 KVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 488889999999999999999999988853321 1 1245667888988764
No 441
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=48.12 E-value=1.9e+02 Score=25.18 Aligned_cols=52 Identities=25% Similarity=0.218 Sum_probs=36.1
Q ss_pred CCCCCCeEEEEeccChHHHHHHHHHHHCC-CcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 73 LITPGKSVLIETTGGNTGIGLAFIAALRG-YKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 73 ~~~~g~~~vv~~ssGN~g~alA~~a~~~G-~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
.+.++++.+|.. +|..|.+++..|+.+| .+++++.+ ++.+.+.++.+|++-+
T Consensus 164 ~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~~~ 216 (340)
T cd05284 164 YLDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGADHV 216 (340)
T ss_pred cCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCcEE
Confidence 345566655655 6669999999999999 77655432 3466777788887433
No 442
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=47.99 E-value=1.4e+02 Score=26.15 Aligned_cols=52 Identities=23% Similarity=0.234 Sum_probs=36.6
Q ss_pred CCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 74 ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 74 ~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
+.+|.+.+|. ..|..|.+++..++.+|.+++++.+. ..+.+.++.+|++-+.
T Consensus 167 ~~~g~~vlV~-g~g~vG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~vi 218 (337)
T cd05283 167 VGPGKRVGVV-GIGGLGHLAVKFAKALGAEVTAFSRS---PSKKEDALKLGADEFI 218 (337)
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHcCCcEEe
Confidence 5566775664 47999999999999999975554322 3566667778876544
No 443
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=47.82 E-value=2.1e+02 Score=25.70 Aligned_cols=110 Identities=13% Similarity=0.116 Sum_probs=52.5
Q ss_pred CCCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEEeccChHHHHHHHHHH-HCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 51 EPCCSVKDRIALSMIKDAEEKGL-ITPGKSVLIETTGGNTGIGLAFIAA-LRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 51 ~ptGS~K~R~a~~~l~~a~~~g~-~~~g~~~vv~~ssGN~g~alA~~a~-~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
.+.|....|-+..-... ...|. +.+... |+..+++..+..++..+- .-| + .|+++.-.-..-...++..|++++
T Consensus 66 ~~~G~~~lr~aia~~~~-~~~g~~~~~~~~-I~it~Gs~~al~~~~~~l~~~g-d-~Vlv~~P~y~~~~~~~~~~g~~~~ 141 (388)
T PRK07366 66 LFHGTLDFREAAAQWYE-QRFGLAVDPETE-VLPLIGSQEGTAHLPLAVLNPG-D-FALLLDPGYPSHAGGVYLAGGQIY 141 (388)
T ss_pred CCCCCHHHHHHHHHHHH-HhhCCcCCCcCe-EEECCCcHHHHHHHHHHhCCCC-C-EEEEcCCCCcchHHHHHhcCCEEE
Confidence 34566666654332211 12242 333222 666666777666554432 123 2 234444333344566778999999
Q ss_pred EeCCC--CChHHHHHHHHHHhhcCCCeEecCCCCCCch
Q 025563 129 LADQA--GGFEGILRKGEEILSNTPNGFMFRQFENPAN 164 (251)
Q Consensus 129 ~v~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~ 164 (251)
.++-. .++....+...+.....++.+|++..+||..
T Consensus 142 ~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG 179 (388)
T PRK07366 142 PMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTT 179 (388)
T ss_pred EEECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCC
Confidence 88642 1221111222222222346777765555543
No 444
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=47.80 E-value=91 Score=28.13 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=34.0
Q ss_pred EEEecc--ChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHH----HHHHcCCEEEEeC
Q 025563 81 LIETTG--GNTGIGLAFIAALRGYKLIIVMPSIAS--MERRI----VLRALGAEVYLAD 131 (251)
Q Consensus 81 vv~~ss--GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~----~~~~~Ga~v~~v~ 131 (251)
|...+. -|.++++..+++++|++++++.|+... ...++ ..+..|+++...+
T Consensus 159 va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK12562 159 LVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTE 217 (334)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 444444 388999999999999999999988632 22222 2344576665544
No 445
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.74 E-value=1.5e+02 Score=24.06 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=36.4
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcH--HHHHHHHHcCCEEEEeC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASM--ERRIVLRALGAEVYLAD 131 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~~~~~Ga~v~~v~ 131 (251)
++.+|+..+|..|.+++......|.+++++....... ...+.++..+.++..+.
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQ 62 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEE
Confidence 3458888889999999999999999876666544322 12333445566665553
No 446
>PRK07856 short chain dehydrogenase; Provisional
Probab=47.62 E-value=1.2e+02 Score=25.19 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=26.9
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPS 110 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~ 110 (251)
++.+|+..+|--|.++|......|.+++++...
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 556888888999999999998899987776543
No 447
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.61 E-value=1.5e+02 Score=25.07 Aligned_cols=71 Identities=20% Similarity=0.170 Sum_probs=39.8
Q ss_pred CeEEEEec--cChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHH-HHcCCE-EEEeCCCCChHHHHHHHHHHhhc
Q 025563 78 KSVLIETT--GGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVL-RALGAE-VYLADQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~s--sGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~-~~~Ga~-v~~v~~~~~~~~~~~~a~~~~~~ 149 (251)
++.+|+.. ++--|.++|....+.|.++++.-......++++.+ +.+|.. .+.+|-. +.++..+..++..++
T Consensus 7 k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-d~~~v~~~~~~~~~~ 81 (260)
T PRK06997 7 KRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVA-SDEQIDALFASLGQH 81 (260)
T ss_pred cEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCC-CHHHHHHHHHHHHHH
Confidence 45466663 45678888888888999887653322223444433 334543 3444443 445555555555444
No 448
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=47.46 E-value=1.7e+02 Score=26.00 Aligned_cols=55 Identities=31% Similarity=0.300 Sum_probs=35.7
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
+...+|.+.+|. .+|-.|.+++..|+.+|.+.+++... +..+...++.+|++.+.
T Consensus 176 ~~~~~g~~vlV~-G~G~vG~~av~~Ak~~G~~vi~~~~~--~~~~~~~~~~~Ga~~~i 230 (357)
T PLN02514 176 GLKQSGLRGGIL-GLGGVGHMGVKIAKAMGHHVTVISSS--DKKREEALEHLGADDYL 230 (357)
T ss_pred ccCCCCCeEEEE-cccHHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHhcCCcEEe
Confidence 444566774444 67999999999999999975554432 22333445668886433
No 449
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=47.44 E-value=29 Score=30.21 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=25.0
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEec
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMP 109 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp 109 (251)
.|+..++|-.|.++|.+.++.|++++||=.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~ 32 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIER 32 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEES
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchh
Confidence 388889999999999999999999888853
No 450
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=47.33 E-value=1.3e+02 Score=29.58 Aligned_cols=56 Identities=25% Similarity=0.248 Sum_probs=38.8
Q ss_pred CCCCCeEEEEeccChHHHHHHHHHHHCCCc-EEEEecCC---C--cHHHHHHHHHcCCEEEEe
Q 025563 74 ITPGKSVLIETTGGNTGIGLAFIAALRGYK-LIIVMPSI---A--SMERRIVLRALGAEVYLA 130 (251)
Q Consensus 74 ~~~g~~~vv~~ssGN~g~alA~~a~~~G~~-~~ivvp~~---~--~~~~~~~~~~~Ga~v~~v 130 (251)
...|+. |+.-++||.|.-+|..+.++|.+ ++++..+. + ....+......|.+++.-
T Consensus 320 ~~~gk~-VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~~eGV~i~~~ 381 (652)
T PRK12814 320 LHPGKK-VVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLREL 381 (652)
T ss_pred ccCCCe-EEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCcEEec
Confidence 334555 88888999999999999999975 77766442 2 233445555678877653
No 451
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=47.24 E-value=1.6e+02 Score=26.43 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=37.8
Q ss_pred CCCCCCCeEEEEecc--ChHHHHHHHHHHHCCCcEEEEecCCC--cHHHHHH----HHHcCCEEEEeC
Q 025563 72 GLITPGKSVLIETTG--GNTGIGLAFIAALRGYKLIIVMPSIA--SMERRIV----LRALGAEVYLAD 131 (251)
Q Consensus 72 g~~~~g~~~vv~~ss--GN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~----~~~~Ga~v~~v~ 131 (251)
|.++ |.+ |+..+. .|.+++++.+++++|+.++++.|+.. +...++. .+..|.++....
T Consensus 151 g~l~-g~k-ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 151 KPYK-DIK-FTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred CCcC-CcE-EEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 5443 344 444443 58999999999999999999999853 2233322 345677766554
No 452
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=47.12 E-value=2.4e+02 Score=26.10 Aligned_cols=125 Identities=12% Similarity=0.074 Sum_probs=75.3
Q ss_pred EEEeccChHHHHHHHHHHHC--CCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCC
Q 025563 81 LIETTGGNTGIGLAFIAALR--GYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQ 158 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~--G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 158 (251)
.|-.|+|+-|.+..-+.++. .++++.++-........++++.++.+.+.+... ......++..... +
T Consensus 5 aILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~----~~~~~l~~~l~~~-~------ 73 (385)
T PRK05447 5 TILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADE----EAAKELKEALAAA-G------ 73 (385)
T ss_pred EEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH----HHHHHHHHhhccC-C------
Confidence 66677899999877777665 567776665555566677899999999888642 1222222211110 1
Q ss_pred CCCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhh-----------------------CCCcEEEE
Q 025563 159 FENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEK-----------------------NPNIKVYG 215 (251)
Q Consensus 159 ~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~-----------------------~~~~~vig 215 (251)
.... .|... ..|+.+. .++|.|+.++++...+.-+..+++.- ....+++=
T Consensus 74 ---~~v~-~G~~~-~~~l~~~--~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV~aG~~i~~~a~~~g~~i~P 146 (385)
T PRK05447 74 ---IEVL-AGEEG-LCELAAL--PEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESLVCAGELVMDAAKKSGAQILP 146 (385)
T ss_pred ---ceEE-EChhH-HHHHhcC--CCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHHhhHHHHHHHHHHcCCeEEE
Confidence 0011 12221 2244432 45899999998775555556665432 12478999
Q ss_pred EeCCCCcc
Q 025563 216 VEPTESAM 223 (251)
Q Consensus 216 Vep~~s~~ 223 (251)
|+++++..
T Consensus 147 VDSEh~ai 154 (385)
T PRK05447 147 VDSEHSAI 154 (385)
T ss_pred ECHHHHHH
Confidence 99999863
No 453
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=47.10 E-value=85 Score=26.12 Aligned_cols=91 Identities=14% Similarity=0.154 Sum_probs=51.7
Q ss_pred EEEeccChHHHHHHHHHHHCCC--cEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChH--HHHH--HHHHHhhcCCCeE
Q 025563 81 LIETTGGNTGIGLAFIAALRGY--KLIIVMPSIASMERRIVLRALGAEVYLADQAGGFE--GILR--KGEEILSNTPNGF 154 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~--~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~--~~~~--~a~~~~~~~~~~~ 154 (251)
|..+.+|....|+.-+++.-.+ +...++.......-++..+..|.....++.. +|. ++++ .++.+.+..++.+
T Consensus 5 VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k-~~~~r~~~d~~l~~~l~~~~~dlv 83 (200)
T COG0299 5 VLASGNGSNLQAIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLDRK-EFPSREAFDRALVEALDEYGPDLV 83 (200)
T ss_pred EEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEeccc-cCCCHHHHHHHHHHHHHhcCCCEE
Confidence 4444457777888888874333 4444556665667777888888877666654 232 2222 2233444444444
Q ss_pred ecCCCCCCchHHHHH-hhHHHHHhhhhCC
Q 025563 155 MFRQFENPANPKIHY-ETTGPEIWKDSGG 182 (251)
Q Consensus 155 ~~~~~~n~~~~~~g~-~t~~~EI~~q~~~ 182 (251)
.+ +|| +-+++++.++.++
T Consensus 84 vL----------AGyMrIL~~~fl~~~~g 102 (200)
T COG0299 84 VL----------AGYMRILGPEFLSRFEG 102 (200)
T ss_pred EE----------cchHHHcCHHHHHHhhc
Confidence 43 333 5566777776643
No 454
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=46.82 E-value=1.7e+02 Score=24.38 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=29.9
Q ss_pred HHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCC--CcEEEEEeCCC
Q 025563 173 GPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNP--NIKVYGVEPTE 220 (251)
Q Consensus 173 ~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~--~~~vigVep~~ 220 (251)
..+++++ .+++|+|++. +...+.|+.+++++.+. ++.|+|.+-..
T Consensus 173 ~~~~l~~-~~~~~ai~~~--~d~~a~~~~~al~~~g~~~di~vig~d~~~ 219 (275)
T cd06320 173 ATTILQR-NPDLKAIYCN--NDTMALGVVEAVKNAGKQGKVLVVGTDGIP 219 (275)
T ss_pred HHHHHHh-CCCccEEEEC--CchhHHHHHHHHHhcCCCCCeEEEecCCCH
Confidence 3344443 2457877665 44556689999988764 68888887653
No 455
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=46.79 E-value=1.6e+02 Score=24.07 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=41.4
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhh
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILS 148 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~ 148 (251)
.+|+..+|.-|.+++......|.+++++...... ......++..|.++..+... .+.++..+..++..+
T Consensus 4 ~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~ 75 (247)
T PRK09730 4 ALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQ 75 (247)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 4788888999999999998999987765544322 22334456667665544332 133333333444433
No 456
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=46.78 E-value=78 Score=31.71 Aligned_cols=53 Identities=26% Similarity=0.261 Sum_probs=39.7
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCc-EEEEecCC---C--cHHHHHHHHHcCCEEEEe
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYK-LIIVMPSI---A--SMERRIVLRALGAEVYLA 130 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~-~~ivvp~~---~--~~~~~~~~~~~Ga~v~~v 130 (251)
|+. ||..++||.|.-+|..+.++|.+ ++++.... . ....++.++..|.+++.-
T Consensus 570 gk~-VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~~ 628 (752)
T PRK12778 570 GKK-VAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTL 628 (752)
T ss_pred CCc-EEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEec
Confidence 455 88889999999999999999998 88876543 2 223345677788887654
No 457
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=46.78 E-value=2.4e+02 Score=26.20 Aligned_cols=55 Identities=20% Similarity=0.140 Sum_probs=33.9
Q ss_pred CCeEEEEeccChHHHHHHHHHHH-CCCcEEEEecCCCcHH-HHHHHHHcCCEEEEeCC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAAL-RGYKLIIVMPSIASME-RRIVLRALGAEVYLADQ 132 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~-~G~~~~ivvp~~~~~~-~~~~~~~~Ga~v~~v~~ 132 (251)
|++ ++..+.+....+++..... +|+..+.+........ ..+.++.+..++..+++
T Consensus 290 Gkr-vai~g~~~~~~~la~~L~eelGm~~v~v~t~~~~~~~~~~~~~~l~~~~~v~~~ 346 (427)
T PRK02842 290 GKR-VFFLPDSQLEIPLARFLSRECGMELVEVGTPYLNRRFLAAELALLPDGVRIVEG 346 (427)
T ss_pred CcE-EEEECCchhHHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHhccCCCEEEEC
Confidence 444 6666677788888888887 8888877765443332 23345555444444544
No 458
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=46.75 E-value=89 Score=29.33 Aligned_cols=50 Identities=24% Similarity=0.313 Sum_probs=38.2
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCC---------c---------HHHHHHHHHcCCEEEE
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA---------S---------MERRIVLRALGAEVYL 129 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~---------~---------~~~~~~~~~~Ga~v~~ 129 (251)
.|+.-++|-.|.+.|..+++.|.+++++-.... + ....+.++.+|.+++.
T Consensus 143 ~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 143 RVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 389999999999999999999999888742221 1 1345678889988764
No 459
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=46.73 E-value=1.4e+02 Score=26.52 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=43.5
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHh-hcCCCeEecCCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEIL-SNTPNGFMFRQF 159 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~ 159 (251)
|+..+++..+..++..+- ..-.-.|+++.-.-..-....+..|++++.++-..++.-..+..++.. +.....+++...
T Consensus 84 I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p 162 (356)
T PRK04870 84 VLLGNGSDELIQLLALAC-AKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAYP 162 (356)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCC
Confidence 666666666665554332 122234555554445556678899999999875322211122222222 333466777533
Q ss_pred CCCc
Q 025563 160 ENPA 163 (251)
Q Consensus 160 ~n~~ 163 (251)
+||.
T Consensus 163 ~NPt 166 (356)
T PRK04870 163 NNPT 166 (356)
T ss_pred CCCC
Confidence 4553
No 460
>PRK12827 short chain dehydrogenase; Provisional
Probab=46.68 E-value=1.6e+02 Score=24.05 Aligned_cols=71 Identities=17% Similarity=0.136 Sum_probs=42.6
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHH----HHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMER----RIVLRALGAEVYLADQA-GGFEGILRKGEEILS 148 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~----~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~ 148 (251)
++.+|+..+|--|.++|......|.+++++..... ...+ ...++..+.++..+..+ .+.++..+...++.+
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVE 83 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 45588888899999999998899998777653221 1222 23455567776555432 233334444444433
No 461
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=46.67 E-value=75 Score=28.19 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=37.2
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHH----HHHHcCCEEEEeC
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRI----VLRALGAEVYLAD 131 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~----~~~~~Ga~v~~v~ 131 (251)
.|.++ |.+..+..-..|.+++++.+++++|++++++.|+... ...++ ..+..|+++...+
T Consensus 142 ~g~l~-g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 207 (302)
T PRK14805 142 FGDVS-KVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTS 207 (302)
T ss_pred hCCcC-CcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 35433 3442333333577799999999999999999887632 22221 2355677776654
No 462
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=46.60 E-value=1.8e+02 Score=24.47 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=38.2
Q ss_pred CeEEEEec--cChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHH-HHcCC--EEEEeCCCCChHHHHHHHHHHhhc
Q 025563 78 KSVLIETT--GGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVL-RALGA--EVYLADQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~s--sGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~-~~~Ga--~v~~v~~~~~~~~~~~~a~~~~~~ 149 (251)
++.+|+.. ++--|.++|..-.+.|.++++.-.. ......+.+ +..+. ..+.++-. +.++..+...+..++
T Consensus 8 k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~-~~~~~~~~~~~~~~~~~~~~~~Dv~-~~~~i~~~~~~~~~~ 82 (256)
T PRK07889 8 KRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFG-RALRLTERIAKRLPEPAPVLELDVT-NEEHLASLADRVREH 82 (256)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCc-cchhHHHHHHHhcCCCCcEEeCCCC-CHHHHHHHHHHHHHH
Confidence 44466665 5778888888888889987665422 212222222 23343 34455543 444555555555444
No 463
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=46.50 E-value=76 Score=24.29 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=22.4
Q ss_pred CCCCCeEEEEeccChHHHHH--HHHHHHCCCcEEEEe
Q 025563 74 ITPGKSVLIETTGGNTGIGL--AFIAALRGYKLIIVM 108 (251)
Q Consensus 74 ~~~g~~~vv~~ssGN~g~al--A~~a~~~G~~~~ivv 108 (251)
.++|+..++.++|||+..-+ +..|+..|++++.+.
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 45667767788888876544 566899999988764
No 464
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=46.38 E-value=60 Score=29.23 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=33.5
Q ss_pred EEEeccC--hHHHHHHHHHHHCCCcEEEEecCCCc--HHHHH----HHHHcCCEEEEeC
Q 025563 81 LIETTGG--NTGIGLAFIAALRGYKLIIVMPSIAS--MERRI----VLRALGAEVYLAD 131 (251)
Q Consensus 81 vv~~ssG--N~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~----~~~~~Ga~v~~v~ 131 (251)
|...+.+ |.++++..+++++|++++++.|+... ...+. ..+..|+++...+
T Consensus 159 ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK01713 159 YVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTD 217 (334)
T ss_pred EEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 4444443 67899999999999999998888642 22221 2344677776654
No 465
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=46.37 E-value=1.7e+02 Score=24.14 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=27.4
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPS 110 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~ 110 (251)
++.+|+..+|..|.+++....+.|.+++++...
T Consensus 9 k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~ 41 (252)
T PRK08220 9 KTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQA 41 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 455888888999999999998899988887644
No 466
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=46.20 E-value=2.2e+02 Score=25.58 Aligned_cols=56 Identities=30% Similarity=0.328 Sum_probs=38.7
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHc-CCEEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRAL-GAEVY 128 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~-Ga~v~ 128 (251)
+...+.+|++.+|. .+|-.|.+++..|+..|.+.++.+.. ++.+++.++.+ +++++
T Consensus 178 ~~~~~~~g~~VlV~-g~G~vG~~~~~la~~~g~~~vi~~~~--~~~~~~~~~~~~~~~vi 234 (386)
T cd08283 178 ELAEVKPGDTVAVW-GCGPVGLFAARSAKLLGAERVIAIDR--VPERLEMARSHLGAETI 234 (386)
T ss_pred hhccCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCcEEE
Confidence 34455667774555 67888999999999999864555533 35778888878 66543
No 467
>PRK06123 short chain dehydrogenase; Provisional
Probab=46.12 E-value=1.4e+02 Score=24.49 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=33.2
Q ss_pred eEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC--cHHHHHHHHHcCCEEEEe
Q 025563 79 SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA--SMERRIVLRALGAEVYLA 130 (251)
Q Consensus 79 ~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~v 130 (251)
+.+|+..+|.-|.++|..-.+.|..+++...... .......++..+.+++.+
T Consensus 4 ~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~ 57 (248)
T PRK06123 4 VMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAV 57 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEE
Confidence 4588888899999999888888987655432221 112234456667665444
No 468
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=46.01 E-value=86 Score=28.50 Aligned_cols=20 Identities=25% Similarity=0.677 Sum_probs=12.7
Q ss_pred CCCEEEEecCchhHHHHHHHHH
Q 025563 183 DVDILVAGIGTGGTVTGSGRFL 204 (251)
Q Consensus 183 ~~d~vv~~vGtGg~~~Gi~~~~ 204 (251)
++| +|+++|+|+.+ -++++.
T Consensus 83 ~~D-~IiavGGGS~i-D~aK~i 102 (380)
T cd08185 83 GCD-FVVGLGGGSSM-DTAKAI 102 (380)
T ss_pred CCC-EEEEeCCccHH-HHHHHH
Confidence 455 56789988754 555544
No 469
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=45.95 E-value=78 Score=28.61 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=16.4
Q ss_pred HHhhhhC-CCCCEEEEecCchhHHHHHHHHH
Q 025563 175 EIWKDSG-GDVDILVAGIGTGGTVTGSGRFL 204 (251)
Q Consensus 175 EI~~q~~-~~~d~vv~~vGtGg~~~Gi~~~~ 204 (251)
++.++++ .++| +|+++|+|+.+ -++++.
T Consensus 71 ~~~~~~~~~~~d-~IiaiGGGs~~-D~AK~v 99 (370)
T cd08551 71 AAVAAYREEGCD-GVIAVGGGSVL-DTAKAI 99 (370)
T ss_pred HHHHHHHhcCCC-EEEEeCCchHH-HHHHHH
Confidence 4444442 2455 57889988865 445544
No 470
>PRK06179 short chain dehydrogenase; Provisional
Probab=45.90 E-value=1.1e+02 Score=25.63 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=40.9
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~ 149 (251)
+..+|+.++|.-|.++|......|.++++..... .+.. ...+.+++.++-. +.++..+...+..++
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~---~~~~--~~~~~~~~~~D~~-d~~~~~~~~~~~~~~ 70 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAGYRVFGTSRNP---ARAA--PIPGVELLELDVT-DDASVQAAVDEVIAR 70 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCh---hhcc--ccCCCeeEEeecC-CHHHHHHHHHHHHHh
Confidence 3458888889999999999889999977665432 1111 1235666666654 444444444444443
No 471
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=45.82 E-value=2e+02 Score=24.87 Aligned_cols=54 Identities=31% Similarity=0.382 Sum_probs=38.5
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAE 126 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 126 (251)
+...+.++.+.+|. .+|..|.+++..|+.+|++.++++.. ++.+...++.+|+.
T Consensus 153 ~~~~~~~g~~vlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 206 (334)
T cd08234 153 DLLGIKPGDSVLVF-GAGPIGLLLAQLLKLNGASRVTVAEP--NEEKLELAKKLGAT 206 (334)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCe
Confidence 34455667775555 57889999999999999985444433 35667777888886
No 472
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=45.81 E-value=2e+02 Score=30.14 Aligned_cols=98 Identities=15% Similarity=0.147 Sum_probs=0.0
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE-eCCCCChHHHHHHHHHHhhcCCCeEe
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL-ADQAGGFEGILRKGEEILSNTPNGFM 155 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~-v~~~~~~~~~~~~a~~~~~~~~~~~~ 155 (251)
++. |+.-++|-.|.+.|...++.|++++||=.... .|..+.. ++.-....+..+...+..++.+=.+.
T Consensus 430 ~~k-VaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~----------~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~ 498 (1006)
T PRK12775 430 LGK-VAICGSGPAGLAAAADLVKYGVDVTVYEALHV----------VGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIE 498 (1006)
T ss_pred CCE-EEEECCCHHHHHHHHHHHHcCCcEEEEecCCC----------CcceeeccCCccCCCHHHHHHHHHHHHHCCCEEE
Q ss_pred cCCCCCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCch
Q 025563 156 FRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTG 194 (251)
Q Consensus 156 ~~~~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtG 194 (251)
.+.- .|......++.++. ..|+||+++|++
T Consensus 499 ~~~~-------vg~~~~~~~l~~~~--~yDaViIATGa~ 528 (1006)
T PRK12775 499 TNKV-------IGKTFTVPQLMNDK--GFDAVFLGVGAG 528 (1006)
T ss_pred eCCc-------cCCccCHHHHhhcc--CCCEEEEecCCC
No 473
>PLN02477 glutamate dehydrogenase
Probab=45.61 E-value=1e+02 Score=28.67 Aligned_cols=52 Identities=19% Similarity=0.166 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHc-CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecC
Q 025563 58 DRIALSMIKDAEEK-GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPS 110 (251)
Q Consensus 58 ~R~a~~~l~~a~~~-g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~ 110 (251)
-|+..+.+..+.+. |.-..|.+ |+..+-||-|..+|......|.+++.+.+.
T Consensus 186 g~Gv~~~~~~~~~~~g~~l~g~~-VaIqGfGnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 186 GRGVVFATEALLAEHGKSIAGQT-FVIQGFGNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred hHHHHHHHHHHHHHcCCCccCCE-EEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 46777777776654 33223444 888889999999999999999988876643
No 474
>PRK06197 short chain dehydrogenase; Provisional
Probab=45.57 E-value=1.8e+02 Score=25.03 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCC--eEecCCCCCCchHHHHHhhHHHHHhhhhCCCCCEEEEec
Q 025563 114 MERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPN--GFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGI 191 (251)
Q Consensus 114 ~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~v 191 (251)
....+.+...|++|+.+... .+...+...++.+..++ ..++ +. +....+ ....+..++.++. +.+|.||..+
T Consensus 30 ~~~a~~l~~~G~~vi~~~r~--~~~~~~~~~~l~~~~~~~~~~~~-~~-Dl~d~~-~v~~~~~~~~~~~-~~iD~li~nA 103 (306)
T PRK06197 30 YETAAALAAKGAHVVLAVRN--LDKGKAAAARITAATPGADVTLQ-EL-DLTSLA-SVRAAADALRAAY-PRIDLLINNA 103 (306)
T ss_pred HHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHHhCCCCceEEE-EC-CCCCHH-HHHHHHHHHHhhC-CCCCEEEECC
Confidence 45566777789999888763 22233333344332211 2222 22 222332 3455666776665 5799999999
Q ss_pred Cch
Q 025563 192 GTG 194 (251)
Q Consensus 192 GtG 194 (251)
|..
T Consensus 104 g~~ 106 (306)
T PRK06197 104 GVM 106 (306)
T ss_pred ccc
Confidence 854
No 475
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=45.45 E-value=2.2e+02 Score=25.21 Aligned_cols=111 Identities=14% Similarity=0.042 Sum_probs=53.6
Q ss_pred CCCCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEEeccChHHHHHHHHHHHCCCc---EEEEecCCCcHHHHHHHHHcCC
Q 025563 50 MEPCCSVKDRIALSMIKDAEEKGL-ITPGKSVLIETTGGNTGIGLAFIAALRGYK---LIIVMPSIASMERRIVLRALGA 125 (251)
Q Consensus 50 ~~ptGS~K~R~a~~~l~~a~~~g~-~~~g~~~vv~~ssGN~g~alA~~a~~~G~~---~~ivvp~~~~~~~~~~~~~~Ga 125 (251)
..|.|.-..|.+..-... ...|. ..++.. |+..+++..+.-++..+- ++-. -.|+++.-.-..-...++.+|+
T Consensus 33 ~~~~G~~~lr~aia~~~~-~~~g~~~~~~~~-Iiit~Gs~~ai~~~~~~~-~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~ 109 (350)
T TIGR03537 33 PSALGTKALREAISGWFE-RRFGVKLDPDAQ-VLPSAGSKEAIFHFPLVF-IDPEEDRRRVIFGTPGYPVYERGALFAGG 109 (350)
T ss_pred CCCCCCHHHHHHHHHHHH-HHhCCCCCCCCc-EEEcCChHHHHHHHHHHH-cCCCCCCceEEEcCCCCcchHHHHHhcCC
Confidence 344666677754333221 12243 223213 666666555554443322 2221 2566665544555666788999
Q ss_pred EEEEeCCC--CChHHHHHHHHHHhhcCCCeEecCCCCCCc
Q 025563 126 EVYLADQA--GGFEGILRKGEEILSNTPNGFMFRQFENPA 163 (251)
Q Consensus 126 ~v~~v~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~ 163 (251)
+++.++-. .++.-..+..++..++....+|+...+||.
T Consensus 110 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPt 149 (350)
T TIGR03537 110 EPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPT 149 (350)
T ss_pred EEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCc
Confidence 99998652 122111122222222334667776444544
No 476
>PRK05854 short chain dehydrogenase; Provisional
Probab=45.39 E-value=1.6e+02 Score=25.68 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=43.2
Q ss_pred HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCC--eEecCCCCCCchHHHHHhhHHHHHhhhhCCCCCEEEEec
Q 025563 114 MERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPN--GFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGI 191 (251)
Q Consensus 114 ~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~v 191 (251)
....+.+...|++|+.+... .+...+...++.++.++ ..++ +. +-...+ -...+..++.+.. +.+|.+|..+
T Consensus 28 ~~~a~~La~~G~~Vil~~R~--~~~~~~~~~~l~~~~~~~~v~~~-~~-Dl~d~~-sv~~~~~~~~~~~-~~iD~li~nA 101 (313)
T PRK05854 28 LGLARRLAAAGAEVILPVRN--RAKGEAAVAAIRTAVPDAKLSLR-AL-DLSSLA-SVAALGEQLRAEG-RPIHLLINNA 101 (313)
T ss_pred HHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHHhCCCCceEEE-Ee-cCCCHH-HHHHHHHHHHHhC-CCccEEEECC
Confidence 45566677789999998764 23334444445443322 2222 22 222232 3455666766654 5789999998
Q ss_pred Cch
Q 025563 192 GTG 194 (251)
Q Consensus 192 GtG 194 (251)
|..
T Consensus 102 G~~ 104 (313)
T PRK05854 102 GVM 104 (313)
T ss_pred ccc
Confidence 854
No 477
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=45.16 E-value=1.4e+02 Score=22.80 Aligned_cols=51 Identities=24% Similarity=0.281 Sum_probs=35.6
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 025563 90 GIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKG 143 (251)
Q Consensus 90 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a 143 (251)
|..+|-.....|..++|.- ..-+.-...++..|.+|+..++. +.+++....
T Consensus 54 G~~~a~~l~~~gvdvvi~~--~iG~~a~~~l~~~GIkv~~~~~~-~V~e~i~~~ 104 (121)
T COG1433 54 GIRIAELLVDEGVDVVIAS--NIGPNAYNALKAAGIKVYVAPGG-TVEEAIKAF 104 (121)
T ss_pred hHHHHHHHHHcCCCEEEEC--ccCHHHHHHHHHcCcEEEecCCC-CHHHHHHHH
Confidence 3556667777787777653 44466677888889999888873 666666554
No 478
>PRK06196 oxidoreductase; Provisional
Probab=45.15 E-value=2.1e+02 Score=24.89 Aligned_cols=69 Identities=22% Similarity=0.246 Sum_probs=42.1
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHH-HHH-cCCEEEEeCCCCChHHHHHHHHHHhhc
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIV-LRA-LGAEVYLADQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~-~~~-~Ga~v~~v~~~~~~~~~~~~a~~~~~~ 149 (251)
+++.+|+..+|--|.++|..-.+.|.+++++.... .+.+. .+. -+.+++.++-. +.++..+.+.++.++
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~---~~~~~~~~~l~~v~~~~~Dl~-d~~~v~~~~~~~~~~ 96 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRP---DVAREALAGIDGVEVVMLDLA-DLESVRAFAERFLDS 96 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH---HHHHHHHHHhhhCeEEEccCC-CHHHHHHHHHHHHhc
Confidence 35568888888899999998888999877765331 22221 111 13555666544 455555555655543
No 479
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=45.14 E-value=1.7e+02 Score=24.48 Aligned_cols=51 Identities=25% Similarity=0.244 Sum_probs=35.9
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCc-EEEEecCCCcHHHHHHHHHcC
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYK-LIIVMPSIASMERRIVLRALG 124 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~-~~ivvp~~~~~~~~~~~~~~G 124 (251)
....+.++++.+|. ..|..|.++...|+.+|.+ ++++ ..++++.+.++.+|
T Consensus 91 ~~~~~~~g~~vlI~-g~g~vg~~~i~~a~~~g~~~vi~~---~~~~~~~~~~~~~g 142 (277)
T cd08255 91 RDAEPRLGERVAVV-GLGLVGLLAAQLAKAAGAREVVGV---DPDAARRELAEALG 142 (277)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE---CCCHHHHHHHHHcC
Confidence 34556677775555 5789999999999999988 4333 23455666777777
No 480
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=45.05 E-value=2.3e+02 Score=25.41 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=79.1
Q ss_pred EeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCC-EEEEeCCCCChHH--HHHHHHHHhhcCCCe-EecCC
Q 025563 83 ETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGA-EVYLADQAGGFEG--ILRKGEEILSNTPNG-FMFRQ 158 (251)
Q Consensus 83 ~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga-~v~~v~~~~~~~~--~~~~a~~~~~~~~~~-~~~~~ 158 (251)
++||+|.-.-+-++ .+-+-++|.|+..-...+ .+..|. +|+..+|.=...+ ..+...++.+++|+. +.++|
T Consensus 143 ~cTSsNAvkvVe~~---~~~~~Iif~PD~~Lg~yv--a~~tg~k~ii~w~G~C~VH~~ft~~~i~~~k~~~Pda~vlvHP 217 (324)
T COG0379 143 CCTSSNAVKVVESA---LDGDKILFLPDKNLGRYV--AKQTGAKKIILWPGHCIVHEEFTAEDIEELKEKYPDAEVLVHP 217 (324)
T ss_pred EEecchHHHHHHhc---cCCCcEEEcCcHHHHHHH--HHHcCCCcEEEECCccchhhhcCHHHHHHHHHHCCCCEEEECC
Confidence 56778876666555 677888999887544333 345677 8999886311111 123445666777875 45666
Q ss_pred CCCCchHHH--HHhhHHHHHhhhh-CCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCC--Ccccc
Q 025563 159 FENPANPKI--HYETTGPEIWKDS-GGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTE--SAMLN 225 (251)
Q Consensus 159 ~~n~~~~~~--g~~t~~~EI~~q~-~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~--s~~~~ 225 (251)
-..+...+. .-++++. |.+.. ....+-+++. |=.|+..-++...|+.+++-..+.+ |+.|.
T Consensus 218 EC~~~Vv~~AD~vGST~~-ii~~~~~~~~~~~iv~-----TE~g~~~~l~~~~P~k~~~~~~~~~~~C~~Mk 283 (324)
T COG0379 218 ECPPEVVELADFVGSTSQ-IIKAVKASPAQKFIVG-----TERGIVHRLQKEAPDKEFIPLPTAGAVCPTMK 283 (324)
T ss_pred CCCHHHHHhccccccHHH-HHHHHhcCCCceEEEE-----ecHHHHHHHHHHCCCCeEEccCCCCCcChhhh
Confidence 544433321 1122332 22221 1335666664 4568899999999999999999985 54443
No 481
>PRK07069 short chain dehydrogenase; Validated
Probab=45.04 E-value=1.7e+02 Score=23.97 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=24.0
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPS 110 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~ 110 (251)
+|+..+|.-|.++|..-.+.|.+++++...
T Consensus 3 lVtG~~~~iG~~~a~~l~~~G~~v~~~~r~ 32 (251)
T PRK07069 3 FITGAAGGLGRAIARRMAEQGAKVFLTDIN 32 (251)
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 777778889999998888889887666543
No 482
>PRK14057 epimerase; Provisional
Probab=44.89 E-value=1.8e+02 Score=25.13 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=21.2
Q ss_pred CCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC
Q 025563 100 RGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 100 ~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~ 131 (251)
.|+.+.|-++.+++..++..+...||+++..+
T Consensus 190 ~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~G 221 (254)
T PRK14057 190 KREGKIIVIDGSLTQDQLPSLIAQGIDRVVSG 221 (254)
T ss_pred cCCCceEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 45666666676666677767777777766554
No 483
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=44.84 E-value=2e+02 Score=24.72 Aligned_cols=56 Identities=30% Similarity=0.409 Sum_probs=38.6
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
...+.++...+|. .+|..|.+++..|+.+|.+++... .++.+.+.++.+|++-+..
T Consensus 160 ~~~~~~~~~vli~-g~g~vG~~~~~la~~~G~~V~~~~---~s~~~~~~~~~~g~~~~~~ 215 (338)
T cd08254 160 AGEVKPGETVLVI-GLGGLGLNAVQIAKAMGAAVIAVD---IKEEKLELAKELGADEVLN 215 (338)
T ss_pred ccCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhCCCEEEc
Confidence 3446667775664 568889999999999999844432 2456677778888754443
No 484
>PRK13984 putative oxidoreductase; Provisional
Probab=44.81 E-value=93 Score=30.17 Aligned_cols=52 Identities=21% Similarity=0.344 Sum_probs=38.5
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC--------------c----HHHHHHHHHcCCEEEE
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA--------------S----MERRIVLRALGAEVYL 129 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~--------------~----~~~~~~~~~~Ga~v~~ 129 (251)
++. ++.-++|-.|.+.|...++.|++++++=.... + ....+.++.+|.+++.
T Consensus 283 ~~~-v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 283 NKK-VAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred CCe-EEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 444 77777999999999999999999998843221 1 2346678889988754
No 485
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=44.78 E-value=1e+02 Score=27.42 Aligned_cols=53 Identities=25% Similarity=0.221 Sum_probs=38.6
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCc-EEEEecCC-----CcHHHHHHHHHcCCEEEEe
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYK-LIIVMPSI-----ASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~-~~ivvp~~-----~~~~~~~~~~~~Ga~v~~v 130 (251)
++. ++..++|+.|.-+|......|.+ ++++.... .....++.++..|.+++.-
T Consensus 172 g~~-vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~ 230 (352)
T PRK12770 172 GKK-VVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLEL 230 (352)
T ss_pred CCE-EEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEeec
Confidence 344 88888999999999887888997 88876432 1234456678888887654
No 486
>PRK06139 short chain dehydrogenase; Provisional
Probab=44.71 E-value=1.7e+02 Score=25.94 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCc
Q 025563 114 MERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGT 193 (251)
Q Consensus 114 ~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGt 193 (251)
....+.+...|++|+.+... .+...+...++.+.. ....+.+. +....+ ....+..++.++. +.+|.+|..+|.
T Consensus 21 ~aia~~la~~G~~Vvl~~R~--~~~l~~~~~~~~~~g-~~~~~~~~-Dv~d~~-~v~~~~~~~~~~~-g~iD~lVnnAG~ 94 (330)
T PRK06139 21 QATAEAFARRGARLVLAARD--EEALQAVAEECRALG-AEVLVVPT-DVTDAD-QVKALATQAASFG-GRIDVWVNNVGV 94 (330)
T ss_pred HHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcC-CcEEEEEe-eCCCHH-HHHHHHHHHHHhc-CCCCEEEECCCc
Confidence 45677778889999998764 222222233333322 22221122 222332 4455666666655 579999999985
Q ss_pred h
Q 025563 194 G 194 (251)
Q Consensus 194 G 194 (251)
+
T Consensus 95 ~ 95 (330)
T PRK06139 95 G 95 (330)
T ss_pred C
Confidence 4
No 487
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=44.58 E-value=1.1e+02 Score=27.07 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=38.3
Q ss_pred CCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcH----HHHHHHHHcCCEEEEeCC
Q 025563 74 ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASM----ERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 74 ~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~----~~~~~~~~~Ga~v~~v~~ 132 (251)
+..|.+ |++.+-+.+....-..+.+.|.+..+++.++.+. .....+...|.++..+..
T Consensus 118 i~~g~~-ILT~~~S~tv~~~l~~A~~~~k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~D 179 (310)
T PRK08535 118 IRDGDV-IMTHCNSSAALSVIKTAHEQGKDIEVIATETRPRNQGHITAKELAEYGIPVTLIVD 179 (310)
T ss_pred cCCCCE-EEEeCCcHHHHHHHHHHHHCCCeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEeh
Confidence 444554 7776655555555556667788888888776543 345667788988888865
No 488
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=44.46 E-value=1e+02 Score=29.13 Aligned_cols=50 Identities=16% Similarity=0.089 Sum_probs=37.7
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCC--------------c----HHHHHHHHHcCCEEEE
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA--------------S----MERRIVLRALGAEVYL 129 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~--------------~----~~~~~~~~~~Ga~v~~ 129 (251)
.++.-++|-.|.+.|...++.|.++++|-.... + ...++.++.+|.+++.
T Consensus 145 ~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 212 (485)
T TIGR01317 145 KVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVT 212 (485)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEEC
Confidence 388889999999999999999999998843211 1 1235667888988864
No 489
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.25 E-value=2e+02 Score=24.41 Aligned_cols=72 Identities=19% Similarity=0.073 Sum_probs=39.4
Q ss_pred CeEEEEeccC--hHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHc-C-CEEEEeCCCCChHHHHHHHHHHhhcC
Q 025563 78 KSVLIETTGG--NTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRAL-G-AEVYLADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 78 ~~~vv~~ssG--N~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~-G-a~v~~v~~~~~~~~~~~~a~~~~~~~ 150 (251)
++.+|+..++ .-|+++|..-.+.|.++++.-.........+.+... + +..+.++-. +.++..+...+..++.
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVA-EDASIDAMFAELGKVW 82 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCC-CHHHHHHHHHHHHhhc
Confidence 4546666554 588888998888999876543322112344444433 2 234445443 4445555555554443
No 490
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=44.21 E-value=2.7e+02 Score=26.01 Aligned_cols=132 Identities=15% Similarity=0.087 Sum_probs=61.0
Q ss_pred EEEeccChHH-----HHHHHHHHHCCCcEEEEecCC--CcHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcCCC
Q 025563 81 LIETTGGNTG-----IGLAFIAALRGYKLIIVMPSI--ASMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNTPN 152 (251)
Q Consensus 81 vv~~ssGN~g-----~alA~~a~~~G~~~~ivvp~~--~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~~~ 152 (251)
+|+++.++.| .+|+.+.++.|+++..|-|.. ..+.... ...|......+.- -+.+...+..++++++. +
T Consensus 7 ~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~~~~~--~~~g~~~~~ld~~~~~~~~v~~~~~~~~~~~-D 83 (451)
T PRK01077 7 VIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDPAYHT--AATGRPSRNLDSWMMGEELVRALFARAAQGA-D 83 (451)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccHHHHH--HHhCCCcccCCceeCCHHHHHHHHHHhcccC-C
Confidence 5555554433 344455577788888776542 1222111 2334332222211 11233344444454444 4
Q ss_pred eEecCCCCCCch---HHHHHhhHHHHHhhhhCCCCCEEEEecCc-hhHHHHHHHHHHhhCCCcEEEEEe
Q 025563 153 GFMFRQFENPAN---PKIHYETTGPEIWKDSGGDVDILVAGIGT-GGTVTGSGRFLKEKNPNIKVYGVE 217 (251)
Q Consensus 153 ~~~~~~~~n~~~---~~~g~~t~~~EI~~q~~~~~d~vv~~vGt-Gg~~~Gi~~~~~~~~~~~~vigVe 217 (251)
...+........ .... ...-.||.+++ ..|-.+|+.... +.+++.+...+....+++++.||=
T Consensus 84 ~vlVEGagGl~~g~~~~~~-~~s~adiA~~l-~~pviLV~~~~~~~~~~a~l~~~~~~~~~~i~i~GvI 150 (451)
T PRK01077 84 IAVIEGVMGLFDGAGSDPD-EGSTADIAKLL-GAPVVLVVDASGMAQSAAALVLGFATFDPDVRIAGVI 150 (451)
T ss_pred EEEEECCCccccCCccCCC-CCCHHHHHHHh-CCCEEEEECCchHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 444422211100 0000 11234778777 344445544443 566777887777765566666663
No 491
>PRK06202 hypothetical protein; Provisional
Probab=44.14 E-value=33 Score=28.63 Aligned_cols=38 Identities=18% Similarity=0.414 Sum_probs=28.7
Q ss_pred CCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCC
Q 025563 184 VDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTES 221 (251)
Q Consensus 184 ~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s 221 (251)
...+=+++|+|....-++..+++.+++.+|+|||+...
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~ 99 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPR 99 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHH
Confidence 35666788888877777766666677789999999754
No 492
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=44.13 E-value=2e+02 Score=25.12 Aligned_cols=51 Identities=31% Similarity=0.457 Sum_probs=36.2
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCC-CcEEEEecCCCcHHHHHHHHHcCCE
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRG-YKLIIVMPSIASMERRIVLRALGAE 126 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G-~~~~ivvp~~~~~~~~~~~~~~Ga~ 126 (251)
..+.++.+.+|. ++|..|.+++..++.+| .++++ + +.+..+...++.+|++
T Consensus 162 ~~~~~g~~vlI~-g~g~~g~~~~~~a~~~G~~~v~~-~--~~~~~~~~~~~~~g~~ 213 (345)
T cd08286 162 GKVKPGDTVAIV-GAGPVGLAALLTAQLYSPSKIIM-V--DLDDNRLEVAKKLGAT 213 (345)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEE-E--cCCHHHHHHHHHhCCC
Confidence 345566775664 56999999999999999 55433 4 3345677777888984
No 493
>PLN02494 adenosylhomocysteinase
Probab=44.11 E-value=94 Score=29.51 Aligned_cols=52 Identities=19% Similarity=0.200 Sum_probs=35.8
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEE
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEV 127 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 127 (251)
+....|++ ++..+.|.-|+++|..++.+|.++++ +.. .+.+.......|.++
T Consensus 249 ~i~LaGKt-VvViGyG~IGr~vA~~aka~Ga~VIV-~e~--dp~r~~eA~~~G~~v 300 (477)
T PLN02494 249 DVMIAGKV-AVICGYGDVGKGCAAAMKAAGARVIV-TEI--DPICALQALMEGYQV 300 (477)
T ss_pred CCccCCCE-EEEECCCHHHHHHHHHHHHCCCEEEE-EeC--CchhhHHHHhcCCee
Confidence 44345666 88899999999999999999997544 322 233334455567764
No 494
>PRK06101 short chain dehydrogenase; Provisional
Probab=43.94 E-value=1.8e+02 Score=23.93 Aligned_cols=62 Identities=19% Similarity=0.110 Sum_probs=39.3
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcC--CEEEEeCCCCChHHHHHHHHH
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALG--AEVYLADQAGGFEGILRKGEE 145 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~G--a~v~~v~~~~~~~~~~~~a~~ 145 (251)
.+|+.++|.-|.++|..-...|.+++++... +.+.+.+...+ ...+.++-. +.++..+.+++
T Consensus 4 vlItGas~giG~~la~~L~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~ 67 (240)
T PRK06101 4 VLITGATSGIGKQLALDYAKQGWQVIACGRN---QSVLDELHTQSANIFTLAFDVT-DHPGTKAALSQ 67 (240)
T ss_pred EEEEcCCcHHHHHHHHHHHhCCCEEEEEECC---HHHHHHHHHhcCCCeEEEeeCC-CHHHHHHHHHh
Confidence 4888888999999999888899987766432 34444444434 444555543 44444444444
No 495
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=43.91 E-value=1.6e+02 Score=26.53 Aligned_cols=54 Identities=28% Similarity=0.424 Sum_probs=39.1
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
..+.+|++.+|. ..|..|.+++..|+.+|...++.+.. ++.+.+.++.+|++-+
T Consensus 199 ~~~~~g~~VlV~-g~g~vG~~ai~lA~~~G~~~vi~~~~--~~~~~~~~~~~g~~~~ 252 (384)
T cd08265 199 GGFRPGAYVVVY-GAGPIGLAAIALAKAAGASKVIAFEI--SEERRNLAKEMGADYV 252 (384)
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCCEE
Confidence 456677775665 67999999999999999854444432 3347788888998544
No 496
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.85 E-value=1.9e+02 Score=24.19 Aligned_cols=72 Identities=15% Similarity=-0.049 Sum_probs=39.9
Q ss_pred CeEEEEecc--ChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHH-HcCC-EEEEeCCCCChHHHHHHHHHHhhcC
Q 025563 78 KSVLIETTG--GNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLR-ALGA-EVYLADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 78 ~~~vv~~ss--GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~-~~Ga-~v~~v~~~~~~~~~~~~a~~~~~~~ 150 (251)
++.+|+..+ +--|.++|....+.|.++++.........+++.+. ..+. ..+.++-. +.++..+..++..++.
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVR-EPGQLEAVFARIAEEW 86 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcC-CHHHHHHHHHHHHHHc
Confidence 444565544 37999999998899998776643322222333332 2333 33445543 4555555555554443
No 497
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=43.65 E-value=84 Score=26.90 Aligned_cols=51 Identities=24% Similarity=0.045 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHc-CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEec
Q 025563 59 RIALSMIKDAEEK-GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMP 109 (251)
Q Consensus 59 R~a~~~l~~a~~~-g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp 109 (251)
++..+.+..+.+. +.......+++..+.||-|..+|..-...|.+++.+.+
T Consensus 12 ~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD 63 (244)
T PF00208_consen 12 YGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSD 63 (244)
T ss_dssp HHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEec
Confidence 4666667776665 43312234488888899999999999999999888753
No 498
>PRK05599 hypothetical protein; Provisional
Probab=43.64 E-value=1.9e+02 Score=24.05 Aligned_cols=69 Identities=14% Similarity=0.083 Sum_probs=38.1
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCC---EEEEeCCCCChHHHHHHHHHHhhcC
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGA---EVYLADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga---~v~~v~~~~~~~~~~~~a~~~~~~~ 150 (251)
.+|+.+++.-|.++|..-.+ |.+++++...... ....+.++..|. ..+.+|-. +.++..+...+..++.
T Consensus 3 vlItGas~GIG~aia~~l~~-g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~-d~~~v~~~~~~~~~~~ 75 (246)
T PRK05599 3 ILILGGTSDIAGEIATLLCH-GEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQ-DLDTHRELVKQTQELA 75 (246)
T ss_pred EEEEeCccHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccC-CHHHHHHHHHHHHHhc
Confidence 47788888889999987764 8776665433211 222344555553 33444443 4444444444444433
No 499
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=43.54 E-value=1.3e+02 Score=28.12 Aligned_cols=49 Identities=24% Similarity=0.212 Sum_probs=35.6
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCC--cHHHHHHHHHcCCEEEE
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIA--SMERRIVLRALGAEVYL 129 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~ 129 (251)
++..+.|..|.++|.+.+..|.+++++=..+. .....+.++..|.+++.
T Consensus 19 v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~ 69 (480)
T PRK01438 19 VVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRL 69 (480)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEE
Confidence 77778899999999999999998777643322 12334567778877754
No 500
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=43.43 E-value=2.6e+02 Score=25.49 Aligned_cols=20 Identities=20% Similarity=0.544 Sum_probs=13.1
Q ss_pred CCCEEEEecCchhHHHHHHHHH
Q 025563 183 DVDILVAGIGTGGTVTGSGRFL 204 (251)
Q Consensus 183 ~~d~vv~~vGtGg~~~Gi~~~~ 204 (251)
++| +|+++|+|+.+ =++++.
T Consensus 79 ~~D-~IIaiGGGS~i-D~aK~i 98 (386)
T cd08191 79 GPD-VIIGLGGGSCI-DLAKIA 98 (386)
T ss_pred CCC-EEEEeCCchHH-HHHHHH
Confidence 455 47889988864 455544
Done!