RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 025563
(251 letters)
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 404 bits (1040), Expect = e-144
Identities = 150/215 (69%), Positives = 179/215 (83%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I KD T+LIGNTP+VYLNNV +GCV R+AAKLEMMEPC SVKDRI SMI DAE+KGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PG+SVLIE T GNTG+GLAF AA +GYKLII MP+ S ERRI+L A G E+ L D A G
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGG 195
+G + K EEIL+ TPNG+M +QFENPANPKIHYETTGPEIWK +GG +D V+GIGTGG
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 196 TVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
T+TG+G++LKE+N N+K+YGVEP ESA+L+GG+PG
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPG 219
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 406 bits (1046), Expect = e-143
Identities = 148/215 (68%), Positives = 177/215 (82%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I + +QLIG TPMVYLN++ GCVA IAAKLE+MEPCCSVKDRI SM+ DAE+KG I+
Sbjct: 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFIS 172
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PGKSVL+E T GNTGIGLAFIAA RGY+LI+ MP+ SMERR++L+A GAE+ L D A G
Sbjct: 173 PGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKG 232
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGG 195
G ++K EEIL NTP+ +M +QF+NPANPKIHYETTGPEIW D+ G VDI VAGIGTGG
Sbjct: 233 MTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGG 292
Query: 196 TVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
T+TG GRF+KEKNP +V GVEPTES +L+GG+PG
Sbjct: 293 TITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPG 327
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A*
Length = 334
Score = 399 bits (1027), Expect = e-141
Identities = 96/215 (44%), Positives = 141/215 (65%), Gaps = 1/215 (0%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
+ + QLIG TP +YLN + + A++ K+E P SVKDR+ ++ AE++G +
Sbjct: 11 VAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKLI 69
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PGKS+++E++ GNTG+ LA + A+RGYK+II MP S+ERR +LR GAEV L A G
Sbjct: 70 PGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALG 129
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGG 195
+G + ++I++ PN + QF N IH ETTGPEIW+ + +VD +AG+GTGG
Sbjct: 130 MKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGG 189
Query: 196 TVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
T+TG R LK+ + ++ VEPTES +L+GG+PG
Sbjct: 190 TLTGVARALKKMGSHARIVAVEPTESPVLSGGKPG 224
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Length = 313
Score = 395 bits (1017), Expect = e-140
Identities = 109/216 (50%), Positives = 146/216 (67%), Gaps = 1/216 (0%)
Query: 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLI 74
+I +D TQLIG TP+V L V DG VA I AKLE P SVKDRI ++M++ AE+ GLI
Sbjct: 5 SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLI 64
Query: 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG 134
P ++++E T GNTGI LA + A RGY+ ++ MP S+ERR++LRA GAE+ L A
Sbjct: 65 KPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 123
Query: 135 GFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTG 194
G G + K EE+ F+ +QFENPANP IH TT E+W+D+ G VDI+VAG+GTG
Sbjct: 124 GMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTG 183
Query: 195 GTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
GT+TG + +KE+ P+ + VEP S +L+GGQ G
Sbjct: 184 GTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKG 219
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 379 bits (976), Expect = e-134
Identities = 104/211 (49%), Positives = 136/211 (64%), Gaps = 2/211 (0%)
Query: 21 TQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGK-S 79
IG TP+V L VV+ +A + KLE + P S+KDR A MIKDAEE+G++ PG
Sbjct: 4 EGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQ 63
Query: 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGI 139
V++E T GNTGIGLA IAA RGY+LI+ MP+ S ER+ VL+A GAE+ L D
Sbjct: 64 VIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAA 123
Query: 140 LRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTG 199
+ L FM QF+NPAN + HYETTGPE+++ G +D V G GTGGT+TG
Sbjct: 124 REEALR-LKEELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITG 182
Query: 200 SGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
GR+LKE+ P++KV VEP S +L+GG+ G
Sbjct: 183 VGRYLKERIPHVKVIAVEPARSNVLSGGKMG 213
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
crystallography, sulfhydrylase; HET: LLP; 1.55A
{Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Length = 316
Score = 372 bits (957), Expect = e-131
Identities = 99/219 (45%), Positives = 140/219 (63%), Gaps = 5/219 (2%)
Query: 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLI 74
AI D + IGNTP+V L + G + K+E P SVK RI +M+ AE+ G +
Sbjct: 2 AIYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTL 59
Query: 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG 134
T GK +++ T GNTGI LA++AA RGYK+ + MP S+ER+ +L LG + L + A
Sbjct: 60 TKGK-EIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAK 118
Query: 135 GFEGILRKGEEILSNTPNGF-MFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGT 193
G +G + K EEI+++ P+ + M +QFENPANP+IH ETTGPEIWKD+ G VD++VAG+GT
Sbjct: 119 GMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGT 178
Query: 194 GGTVTGSGRFLK-EKNPNIKVYGVEPTESAMLNGGQPGR 231
GG++TG R +K + I VEP ES +++ G
Sbjct: 179 GGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGE 217
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 370 bits (952), Expect = e-130
Identities = 111/215 (51%), Positives = 146/215 (67%), Gaps = 2/215 (0%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
T+LIG+TP V LN +VD A + KLE M P SVKDRIAL+MI+ AE+ G +
Sbjct: 4 TVNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLK 63
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PG ++E T GNTGIGLA +AA +GYK ++VMP S+ERR +LRA GAE+ L A G
Sbjct: 64 PG-DTIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQG 122
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGG 195
G + K EE++ FM +QF+N ANP+IH TTG EI + G +D VAG+GTGG
Sbjct: 123 MRGAIAKAEELVR-EHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGG 181
Query: 196 TVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
T+TG+G+ L+E PNIK+Y VEP +S +L+GG+PG
Sbjct: 182 TITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPG 216
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 368 bits (946), Expect = e-129
Identities = 88/220 (40%), Positives = 127/220 (57%), Gaps = 7/220 (3%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCV----ARIAAKLEMMEPCCSVKDRIALSMIKDAEEK 71
I + + IG TP+V L+ V + RI KLE P SVKDR+ +++ A +
Sbjct: 13 IYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKD 72
Query: 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131
G + PG +IE+T GNTGI L A+ GY++ I MPS S+ER+++++A GAE+ L +
Sbjct: 73 GRLKPGM-EIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTE 131
Query: 132 QAGGFEGILRKGEEILSNTPNG-FMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAG 190
G G + + +++ P F+ QF NP N H+ T EIW+D+ G+VDI+V+
Sbjct: 132 GKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWEDTDGEVDIVVSA 190
Query: 191 IGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
+GT GTV G LKEK IK+ VEP ESA+L G G
Sbjct: 191 VGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKG 230
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 355 bits (913), Expect = e-124
Identities = 94/212 (44%), Positives = 129/212 (60%), Gaps = 2/212 (0%)
Query: 19 DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGK 78
Q IGNTP+V L + + + KLE P SVKDR ALSMI +AE++G I PG
Sbjct: 3 TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD 62
Query: 79 SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEG 138
VLIE T GNTGI LA IAAL+GY++ ++MP S ERR +RA GAE+ L + G EG
Sbjct: 63 -VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEG 121
Query: 139 ILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVT 198
E+ + G + QF NP NP HY TTGPEIW+ +GG + V+ +GT GT+T
Sbjct: 122 ARDLALEMANRGE-GKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTIT 180
Query: 199 GSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
G RF++E++ + + G++P E + + G +
Sbjct: 181 GVSRFMREQSKPVTIVGLQPEEGSSIPGIRRW 212
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
protein structure initiative, joint center for
structural G transferase; 1.80A {Thermotoga maritima}
SCOP: c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 350 bits (900), Expect = e-122
Identities = 99/225 (44%), Positives = 131/225 (58%), Gaps = 9/225 (4%)
Query: 7 MEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIK 66
M + +LIG+TP+V L+++ +RI KLE P SVKDR AL MI
Sbjct: 1 MGSDKIHHHHHHMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMIL 56
Query: 67 DAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAE 126
DAE++GL+ G ++E T GN GI +A I A RG+++I+ MP S+ERR VL+ LGAE
Sbjct: 57 DAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAE 113
Query: 127 VYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDI 186
+ L G +G + K EI M QFENP N H TTGPEI K +D
Sbjct: 114 LVLTPGELGMKGAVEKALEIS-RETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDA 172
Query: 187 LVAGIGTGGTVTGSGRFLKEK-NPNIKVYGVEPTESAMLNGGQPG 230
VAG+GTGGT++G GR LK +K+ VEP +S +L+GGQPG
Sbjct: 173 FVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPG 217
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 331 bits (850), Expect = e-115
Identities = 87/215 (40%), Positives = 119/215 (55%), Gaps = 9/215 (4%)
Query: 15 AIKKDATQLIGNTPMVYLNNVV-------DGCVARIAAKLEMMEPCCSVKDRIALSMIKD 67
Q +GNTP+V L + DG R+ AKLE P S+KDR A+ MI+
Sbjct: 4 TRYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQ 63
Query: 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEV 127
AE GL+ PG + ++E T GNTGI LA A L+GY+LI VMP S+ERR +L GA++
Sbjct: 64 AEADGLLRPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQI 122
Query: 128 YLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDIL 187
+ GG + +E+ + P+ M Q+ NPAN HY TGPE+ D +
Sbjct: 123 IFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADLPE-ITHF 181
Query: 188 VAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESA 222
VAG+GT GT+ G+GRFL+E N+K+ EP
Sbjct: 182 VAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYGE 216
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 323 bits (830), Expect = e-109
Identities = 90/225 (40%), Positives = 127/225 (56%), Gaps = 11/225 (4%)
Query: 16 IKKDATQLIGNTPMVYLNNVV--DGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGL 73
I + ++IG TP+V LNN+ DG + AK E + P SVKDRI M++DAEE+GL
Sbjct: 50 ITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGL 109
Query: 74 ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA 133
+ PG +IE T GNTGIGLA A++GYK IIVMP S E+ LR LGA++
Sbjct: 110 LKPG-YTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTE 168
Query: 134 GGF---EGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAG 190
+ EG++ +++ TPN + Q+ N NP HY+ T EI VD++V
Sbjct: 169 AAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVVS 228
Query: 191 IGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAM-----LNGGQPG 230
GT GT++G GR +KE+ P+ ++ GV+P S + LN
Sbjct: 229 AGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQ 273
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 320 bits (822), Expect = e-109
Identities = 96/225 (42%), Positives = 127/225 (56%), Gaps = 11/225 (4%)
Query: 16 IKKDATQLIGNTPMVYLNNVV--DGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGL 73
I D + IG+TPMV +N + G + AK E SVKDRI+L MI+DAE G
Sbjct: 98 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 157
Query: 74 ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL---A 130
+ PG +IE T GNTGIGLA AA+RGY+ IIVMP S E+ VLRALGAE+
Sbjct: 158 LKPG-DTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTN 216
Query: 131 DQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAG 190
+ E + + + PN + Q+ N +NP HY+TT EI + G +D+LVA
Sbjct: 217 ARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVAS 276
Query: 191 IGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAM-----LNGGQPG 230
+GTGGT+TG R LKEK P ++ GV+P S + LN +
Sbjct: 277 VGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQT 321
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 316 bits (813), Expect = e-108
Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 9/214 (4%)
Query: 19 DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPC-CSVKDRIALSMIKDAEEKGLITPG 77
D + TP+V + R+ KLE P SVKDR A+ +I + + G
Sbjct: 89 DFFERGKPTPLVRSRLQLPNG-VRVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKG 145
Query: 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFE 137
S++ + T N G+ L+ +A L GY+ + +P A +++ R LGA+V + +A
Sbjct: 146 -SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTV 204
Query: 138 GILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGD---VDILVAGIGTG 194
+L + + S QF N AN + H T EI+ S + + +GT
Sbjct: 205 HLLPRVMK-DSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTS 263
Query: 195 GTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQ 228
G ++ + +L+ +P+I+ V+P + + G +
Sbjct: 264 GHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIR 297
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 75.2 bits (186), Expect = 4e-16
Identities = 46/216 (21%), Positives = 80/216 (37%), Gaps = 43/216 (19%)
Query: 24 IGNTPMVY---LNNVVDGCVARIAAKLEMMEPCCSVKDRIA----LSMIKDAEEKGLITP 76
TP++ +N A + K E + + K R A + + + G++T
Sbjct: 24 ANKTPVLTSSTVNKEFV---AEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLT- 79
Query: 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGF 136
+ GN +A A + G I+MP A + + G +V + D+
Sbjct: 80 -------FSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY--K 130
Query: 137 EGILRKGEEILSNTPNGFMFRQFENPANPKIH-YE---------TTGPEIWKDSGGDVDI 186
+ + +EI G I Y+ T E++++ G +D
Sbjct: 131 DDREKMAKEISERE--GLTI----------IPPYDHPHVLAGQGTAAKELFEEVG-PLDA 177
Query: 187 LVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESA 222
L +G GG ++GS + PN +VYGVEP
Sbjct: 178 LFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGN 213
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 73.0 bits (180), Expect = 3e-15
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 25/142 (17%)
Query: 87 GNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEI 146
GN G L + A L G IV+P A +++ ++A GA + + + E + +
Sbjct: 85 GNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPS--DESRENVAKRV 142
Query: 147 LSNTPNGFMFRQFENPANPKIH-YE---------TTGPEIWKDSGGDVDILVAGIGTGGT 196
T + +H + T E+ VD LV +G GG
Sbjct: 143 TEET--EGIM----------VHPNQEPAVIAGQGTIALEVLNQVP-LVDALVVPVGGGGM 189
Query: 197 VTGSGRFLKEKNPNIKVYGVEP 218
+ G +K P++KVY EP
Sbjct: 190 LAGIAITVKALKPSVKVYAAEP 211
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Length = 372
Score = 73.1 bits (180), Expect = 4e-15
Identities = 36/228 (15%), Positives = 70/228 (30%), Gaps = 43/228 (18%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIK---DAEEKG 72
L TP+ + + K++ +P S K R K
Sbjct: 36 FMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAH 95
Query: 73 LITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA-- 130
+ + GN G+ A+ A G IV+P L+ GA +
Sbjct: 96 FVCS--------SAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGE 147
Query: 131 --DQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH-YE---------TTGPEIWK 178
D+A + + N P G+++ I ++ + E+ +
Sbjct: 148 LLDEA------FELAKALAKNNP-GWVY----------IPPFDDPLIWEGHASIVKELKE 190
Query: 179 DSGGDVDILVAGIGTGGTVTGSGRFLKE-KNPNIKVYGVEPTESAMLN 225
+ +G GG + G + L+E ++ V +E + +
Sbjct: 191 TLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFH 238
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 72.9 bits (179), Expect = 4e-15
Identities = 35/156 (22%), Positives = 58/156 (37%), Gaps = 14/156 (8%)
Query: 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFE 137
K TT GN G G+A+ A G +I MP ++ ER + LGAE + D ++
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD--MNYD 169
Query: 138 GILRKGEEILSNTPNGFMFRQFENPANPKIH------YETTGPEIW---KDSGGDVDILV 188
+R + + + + KI Y T E ++ G ++
Sbjct: 170 DTVRLTMQ-HAQQHGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVL 228
Query: 189 AGIGTGGTVTGSGRFLKE--KNPNIKVYGVEPTESA 222
G G G +L + N+ VEP ++
Sbjct: 229 LQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKAD 264
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 72.1 bits (178), Expect = 5e-15
Identities = 54/213 (25%), Positives = 84/213 (39%), Gaps = 42/213 (19%)
Query: 27 TPMVY---LNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAE-EKGLITPGKSVLI 82
TP++ L+ ++ R+ K E ++ S K R ALS E KGL+
Sbjct: 21 TPLLTSRLLDGLLG---KRLLLKAEHLQKTGSFKARGALSKALALENPKGLLA------- 70
Query: 83 ETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRK 142
+ GN G+A+ A + G K ++VMP AS ++ RA GAEV +
Sbjct: 71 -VSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVT--AKNREEV 127
Query: 143 GEEILSNTPNGFMFRQFENPANPKIH-YE---------TTGPEIW---KDSGGDVDILVA 189
+ T G+ IH ++ T G E+ G ++A
Sbjct: 128 ARALQEET--GYAL----------IHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLA 175
Query: 190 GIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESA 222
+G GG + G +K +P V GVEP +
Sbjct: 176 PVGGGGLLAGLATAVKALSPTTLVLGVEPEAAD 208
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 70.3 bits (173), Expect = 3e-14
Identities = 57/210 (27%), Positives = 79/210 (37%), Gaps = 37/210 (17%)
Query: 27 TPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIK--DAEEK--GLITPGKSVLI 82
T M N + C I K E M+ S K R A + + EK G++
Sbjct: 41 TGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTEAEKRKGVVAC------ 94
Query: 83 ETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRK 142
+ GN G++ A+ G +VMP A + AEV L F + K
Sbjct: 95 --SAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDN--FNDTIAK 150
Query: 143 GEEILSNTPNGFMFRQFENPANPKIH-YE---------TTGPEIWKDSGGDVDILVAGIG 192
EI+ G +F I Y+ T G EI +D DVD ++ IG
Sbjct: 151 VSEIVETE--GRIF----------IPPYDDPKVIAGQGTIGLEIMEDLY-DVDNVIVPIG 197
Query: 193 TGGTVTGSGRFLKEKNPNIKVYGVEPTESA 222
GG + G +K NP IKV GV+
Sbjct: 198 GGGLIAGIAIAIKSINPTIKVIGVQAENVH 227
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo
sapiens}
Length = 318
Score = 69.5 bits (171), Expect = 4e-14
Identities = 38/221 (17%), Positives = 72/221 (32%), Gaps = 44/221 (19%)
Query: 23 LIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIK---DAEEKGLITPGKS 79
TP++ + + K E ++P S K R + + L+
Sbjct: 4 FHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKGCRHLVCS--- 60
Query: 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA----DQAGG 135
+GGN GI A+ A G IV+P S++ L+ GAEV L D+A
Sbjct: 61 -----SGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDEA-- 113
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIH-YE---------TTGPEIWKDSGG-DV 184
+ +E+ G+ + ++ + E+
Sbjct: 114 ----NLRAQELAKRD--GWEN----------VPPFDHPLIWKGHASLVQELKAVLRTPPG 157
Query: 185 DILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225
+++A G G L+ ++ + +E + N
Sbjct: 158 ALVLAVGGGGLLAGVVAGLLEVGWQHVPIIAMETHGAHCFN 198
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 67.9 bits (166), Expect = 2e-13
Identities = 32/180 (17%), Positives = 61/180 (33%), Gaps = 11/180 (6%)
Query: 25 GNTPMVYLNNVVD--GCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLI 82
GN+ + + + + K + S KD ++ + +
Sbjct: 129 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVG 188
Query: 83 ETTGGNTGIGLAFIAALRGYKLIIVMPS-IASMERRIVLRALGAEVYLADQAGGFEGILR 141
+ G+T L+ A G I+ +P+ SM + + A GA V D F+G ++
Sbjct: 189 CASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSID--TDFDGCMK 246
Query: 142 KGEEILSNTPNGFMFRQFENPANPKIH-YETTGPEIWKDSGGDV-DILVAGIGTGGTVTG 199
EI + N ++ +T EI + V D ++ G G +
Sbjct: 247 LIREITAE--LPIYLANSLNSL--RLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYA 302
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
PDB: 3ss9_X* 3r0x_A* 3r0z_A
Length = 442
Score = 67.1 bits (164), Expect = 4e-13
Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 13/166 (7%)
Query: 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGF 136
+ + + GN G+ + ++A G+K+ + M + A ++ LR+ G V + +
Sbjct: 159 SQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYE--QDY 216
Query: 137 EGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEI---WKDSGGDVD-----ILV 188
+ +G + + PN F F EN + Y G + + G VD +
Sbjct: 217 GVAVEEGRKAAQSDPNCF-FIDDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVY 275
Query: 189 AGIGTGGTVTGSGRFLKEK-NPNIKVYGVEPTESA-MLNGGQPGRL 232
G GG G LK ++ + EPT S ML G G
Sbjct: 276 LPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLH 321
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 66.2 bits (162), Expect = 8e-13
Identities = 50/209 (23%), Positives = 80/209 (38%), Gaps = 24/209 (11%)
Query: 25 GNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIET 84
G TP++ N+ I K+E + P S KDR + DA G ++VL +
Sbjct: 37 GGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ----RAVLCAS 92
Query: 85 TGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQAGGFEGILRKG 143
T GNT A AA G +++P +M + GA++ D G F+ L
Sbjct: 93 T-GNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQID--GNFDDCLELA 149
Query: 144 EEILSNTPNGFMFRQFENPANPKIH--YETTGPEIWKDSGGDVDILVAGIGTGGTVTGSG 201
++ ++ P N NP +T EI G D+ +G G +T
Sbjct: 150 RKMAADFPTIS----LVNSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGNAGNITAYW 205
Query: 202 RFLKE--------KNPNIKVYGVEPTESA 222
+ E K P ++ G + +A
Sbjct: 206 KGYTEYHQLGLIDKLP--RMLGTQAAGAA 232
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 66.1 bits (162), Expect = 8e-13
Identities = 53/210 (25%), Positives = 82/210 (39%), Gaps = 25/210 (11%)
Query: 25 GNTPMVYLNNVVD--GCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLI 82
GNTP++ +N+ G +I K E + P S KDR I A E G ++V+
Sbjct: 29 GNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAGK----RAVIC 84
Query: 83 ETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQAGGFEGILR 141
+TG NT A AA G + +++P A ++ + GA+V G F+ L
Sbjct: 85 ASTG-NTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQ--GTFDDALN 141
Query: 142 KGEEILSNTPNGFMFRQFENPANPKIH-YETTGPEIWKDSGGDVDILVAGIGTGGTVTGS 200
+I N NP +I +T EI G D +G G +T
Sbjct: 142 IVRKIGEN--FPVEIVNSVNPY--RIEGQKTAAFEICDTLGEAPDYHFIPVGNAGNITAY 197
Query: 201 GRFLKE--------KNPNIKVYGVEPTESA 222
+ K K P ++ G + +A
Sbjct: 198 WKGFKIYYEEGKITKLP--RMMGWQAEGAA 225
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 63.8 bits (156), Expect = 5e-12
Identities = 52/214 (24%), Positives = 82/214 (38%), Gaps = 45/214 (21%)
Query: 27 TPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMI----KDAEEKGLITPGKSVLI 82
+P+ + D K E + S K R A +M+ ++ +KG+IT
Sbjct: 61 SPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREELDKGVIT------- 113
Query: 83 ETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA----DQAGGFEG 138
+ GN G+A IVMP+ + +RALG +V L D+A
Sbjct: 114 -ASAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFDEA--QTH 170
Query: 139 ILRKGEEILSNTPNGFMFRQFENPANPKIH-YE---------TTGPEIWKDSGGDVDILV 188
L E+ +G + I ++ T G EI + D+ +
Sbjct: 171 ALELSEK------DGLKY----------IPPFDDPGVIKGQGTIGTEINRQLK-DIHAVF 213
Query: 189 AGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESA 222
+G GG + G F K+ PN K+ GVEP +A
Sbjct: 214 IPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAA 247
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 62.7 bits (153), Expect = 1e-11
Identities = 48/211 (22%), Positives = 81/211 (38%), Gaps = 27/211 (12%)
Query: 25 GNTPMVYLNNVVDGCV--ARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLI 82
G+TP++ L + R+ AK E + P S KDR + A E G ++V
Sbjct: 27 GSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGA----QAVAC 82
Query: 83 ETTGGNTGIGLAFIAALRGYKLIIVMPS-IASMERRIVLRALGAEVYLADQAGGFEGILR 141
+TG NT A AA G I+V+P+ ++ + GA + + G F+ LR
Sbjct: 83 ASTG-NTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVE--GNFDDALR 139
Query: 142 KGEEILSNTPNGFMFRQFENPANPKIH--YETTGPEIWKDSGGDVDILVAGIGTGGTVTG 199
+++ P + N NP +T E+ + G +G G +T
Sbjct: 140 LTQKLTEAFPVALV-----NSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNITA 194
Query: 200 SGRFLKE--------KNPNIKVYGVEPTESA 222
K + P ++ G + +A
Sbjct: 195 HWMGYKAYHALGKAKRLP--RMLGFQAAGAA 223
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 61.9 bits (151), Expect = 2e-11
Identities = 52/214 (24%), Positives = 84/214 (39%), Gaps = 45/214 (21%)
Query: 27 TPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIK--DAEE--KGLITPGKSVLI 82
TP+ + + I K E +P S K R A +M+ E+ G+IT
Sbjct: 32 TPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVIT------- 84
Query: 83 ETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA----DQAGGFEG 138
+ GN G+AF +A G K +IVMP+ + + +R G EV L D+A
Sbjct: 85 -ASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEA--KAK 141
Query: 139 ILRKGEEILSNTPNGFMFRQFENPANPKIH-YE---------TTGPEIWKDSGGDVDILV 188
+ ++ GF + + ++ T E+ + +D +
Sbjct: 142 AIELSQQ------QGFTW----------VPPFDHPMVIAGQGTLALELLQQDA-HLDRVF 184
Query: 189 AGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESA 222
+G GG G +K+ P IKV VE +SA
Sbjct: 185 VPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSA 218
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 36.8 bits (86), Expect = 0.003
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131
VLI TG G+G AF AL+G+ L++ ++ + R +GA AD
Sbjct: 3 VLI--TGATGGLGGAFARALKGHDLLLSGRRAGALAE--LAREVGARALPAD 50
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 36.3 bits (84), Expect = 0.006
Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 12/150 (8%)
Query: 69 EEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128
+ + G VLI G G G + V ++S ++ +RALG ++
Sbjct: 213 DRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAV---VSSAQKEAAVRALGCDLV 269
Query: 129 LADQAGGFEGILRKGEEILSNTPNGFMFRQFE-NPANPKIHYETTGPEIWKDS------G 181
+ G + + T E P I +E TG + S G
Sbjct: 270 INRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLSVIVARRG 329
Query: 182 GDVDILVAGIGTGGTVTGSGRFLKEKNPNI 211
G ++ G +G T R+L K I
Sbjct: 330 G--TVVTCGSSSGYLHTFDNRYLWMKLKKI 357
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 35.9 bits (83), Expect = 0.010
Identities = 33/151 (21%), Positives = 53/151 (35%), Gaps = 16/151 (10%)
Query: 70 EKGLITPGKSVLIETTGGNTGIGLAFI--AALRGYKLIIVMPSIASMERRIVLRALGAEV 127
+ G +VLI G + G+G A G I V ++S ++ + RA+GAE
Sbjct: 222 NGAGMKQGDNVLI--WGASGGLGSYATQFALAGGANPICV---VSSPQKAEICRAMGAEA 276
Query: 128 YLADQAGGFEGILRKGEEILSNTPN-GFMFRQFENPANPKIHYETTGPEIWKDS------ 180
+ A G+ + + G R+ + I +E G E + S
Sbjct: 277 IIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETFGASVFVTRK 336
Query: 181 GGDVDILVAGIGTGGTVTGSGRFLKEKNPNI 211
GG I +G R+L I
Sbjct: 337 GG--TITTCASTSGYMHEYDNRYLWMSLKRI 365
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 34.9 bits (80), Expect = 0.020
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 75 TPGKSVLIETTGGNTGIGLAFIA---ALRGYKLII 106
T + ++ TGGN GIG I + G +++
Sbjct: 10 TKRRCAVV--TGGNKGIGFE-ICKQLSSNGIMVVL 41
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 33.7 bits (78), Expect = 0.040
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
Query: 77 GKSVLIETTGGNTGIGL--AFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY-----L 129
++V+I TG N+G+G A A RG +I+ + E R + +V L
Sbjct: 16 QRTVVI--TGANSGLGAVTARELARRGATVIMAVRDTRKGEA--AARTMAGQVEVRELDL 71
Query: 130 ADQA 133
D +
Sbjct: 72 QDLS 75
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 33.0 bits (76), Expect = 0.064
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 77 GKSVLIETTGGNTGIG--LAFIAALRGYKLIIV 107
GK V++ TG + GIG +A+ A G +++
Sbjct: 28 GKKVIV--TGASKGIGREMAYHLAKMGAHVVVT 58
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 32.9 bits (76), Expect = 0.073
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
Query: 77 GKSVLIETTGGNTGIGLAFIA---ALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131
+LI TG + +GL A G+++II LR GA D
Sbjct: 27 SAPILI--TGASQRVGLH-CALRLLEHGHRVIIS--YRTEHASVTELRQAGAVALYGD 79
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
substrate, PLP, crystal, complex, hydrolase; HET: PLP;
1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Length = 338
Score = 32.9 bits (75), Expect = 0.083
Identities = 10/43 (23%), Positives = 14/43 (32%)
Query: 175 EIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVE 217
+ G D +V TG T G +V GV+
Sbjct: 181 AQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVD 223
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.12
Identities = 39/253 (15%), Positives = 74/253 (29%), Gaps = 60/253 (23%)
Query: 3 LEASMEDNHH--KRAIKKDATQLIGNTPMVY------LNNVVD----GCVARIAAKLEMM 50
+E + N+ IK + Q T M Y L N V+R+ L++
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRM-YIEQRDRLYNDNQVFAKYNVSRLQPYLKL- 140
Query: 51 EPCCSVKDRIALSMIKDAEE---KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIV 107
R AL ++ A+ G++ GK+ + + YK+
Sbjct: 141 --------RQALLELRPAKNVLIDGVLGSGKTWVA-------------LDVCLSYKVQCK 179
Query: 108 MP------SIASMER-RIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFE 160
M ++ + VL L +Y D ++ ++ + R +
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 161 NPANPK---IHYETTGPEIWKDSGGDVDILVAGIGTGGT----VTGSGRFLKEKNPNIK- 212
+ + + W IL+ T T VT + ++
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILL----T--TRFKQVTDFLSAATTTHISLDH 293
Query: 213 -VYGVEPTESAML 224
+ P E L
Sbjct: 294 HSMTLTPDEVKSL 306
>1itx_A Chitinase A1, glycosyl hydrolase; alpha-beta (TIM) barrel; 1.10A
{Bacillus circulans} SCOP: c.1.8.5 d.26.3.1
Length = 419
Score = 32.4 bits (74), Expect = 0.13
Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 3/82 (3%)
Query: 135 GFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTG 194
F I G + + G + D D AG
Sbjct: 44 AFADICWNGIHGNPDPSGPNPVTWTCQNEKSQTINVPNGTIVLGDPWIDTGKTFAGDTWD 103
Query: 195 GTVTGS-GRF--LKEKNPNIKV 213
+ G+ + LK+ NPN+K
Sbjct: 104 QPIAGNINQLNKLKQTNPNLKT 125
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP
binding, structure function project, S2F, unknown
function; 2.00A {Escherichia coli} SCOP: c.37.1.10
d.237.1.1
Length = 318
Score = 32.2 bits (74), Expect = 0.14
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 20/69 (28%)
Query: 22 QLIGNTP--MVYLNNVVDGCVARIAAKLEMMEPCCSVKD--RIALSMIKDAEEKGLITPG 77
QLIG+ + L N GC+ CCS + AL + D +KG I
Sbjct: 48 QLIGDRATQIKTLTN---GCI------------CCSRSNELEDALLDLLDNLDKGNIQF- 91
Query: 78 KSVLIETTG 86
++IE TG
Sbjct: 92 DRLVIECTG 100
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 31.8 bits (73), Expect = 0.15
Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 43/125 (34%)
Query: 78 KSVLIETTGGNTGIGLAF--IAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQAG 134
++I TG ++G+G + G + S + L + L++ G
Sbjct: 2 SLIVI--TGASSGLGAELAKLYDAEGKATYLT----GRSESK---LSTVTNC--LSNNVG 50
Query: 135 GFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILV--AGIG 192
L +E+ ++++ +V AG G
Sbjct: 51 YRARDLASHQEV---------------------------EQLFEQLDSIPSTVVHSAGSG 83
Query: 193 TGGTV 197
G +
Sbjct: 84 YFGLL 88
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 31.8 bits (73), Expect = 0.19
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 77 GKSVLIETTGGNTGIGLAFIAAL--RGYKLIIVMPSIASMERRIVLRALG--AEVYLAD 131
G++ ++ TG +GIG A G ++ + E + G AE +AD
Sbjct: 31 GRTAVV--TGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVAD 87
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 31.5 bits (72), Expect = 0.21
Identities = 28/133 (21%), Positives = 45/133 (33%), Gaps = 51/133 (38%)
Query: 77 GKSVLIETTGGNTGIG--LAFIAALRGYKLIIV---MPSIASMERRIVLRALGAEVY--- 128
G+ VLI TG GIG A+ A KL++ + + + LGA+V+
Sbjct: 31 GEIVLI--TGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC--KGLGAKVHTFV 86
Query: 129 --LADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDI 186
+++ E I +++ K GDV I
Sbjct: 87 VDCSNR----EDIYSSAKKV-------------------------------KAEIGDVSI 111
Query: 187 LV--AGIGTGGTV 197
LV AG+ +
Sbjct: 112 LVNNAGVVYTSDL 124
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 31.3 bits (72), Expect = 0.22
Identities = 25/122 (20%), Positives = 39/122 (31%), Gaps = 41/122 (33%)
Query: 77 GKSVLIETTGGNTGIGLAFIAAL--RGYKLIIVMPSIASMERRI-VLRALG--AEVYLAD 131
GK+ L+ TG G+G A+ L G ++I+ + + L G A D
Sbjct: 9 GKTALV--TGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFD 66
Query: 132 QAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILV--A 189
+ I + F + + G VDIL+ A
Sbjct: 67 --------VTDELAIEA------AFSKLD------------------AEGIHVDILINNA 94
Query: 190 GI 191
GI
Sbjct: 95 GI 96
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 31.1 bits (71), Expect = 0.25
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 77 GKSVLIETTGGNTGIGLAFIAAL--RGYKLIIV 107
+ VL+ GG +G + A R + + +
Sbjct: 7 ARRVLV--YGGRGALGSRCVQAFRARNWWVASI 37
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 30.9 bits (71), Expect = 0.26
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 77 GKSVLIETTGGNTGIGLAFIAAL--RGYKLIIVMPSIASMERRIV-LRALGAEVYLAD 131
G + TG +GIGL A G +LI++ A+++R L A A +AD
Sbjct: 11 GACAAV--TGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVAD 66
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 31.2 bits (71), Expect = 0.26
Identities = 16/116 (13%), Positives = 32/116 (27%), Gaps = 19/116 (16%)
Query: 35 VVDGCVARIAAKLEMMEP-CCSVK--DRIALSMIKDAEEKGL--ITPGKSVLIETTG-GN 88
+ + I + +P K + I + + VL+ G G
Sbjct: 137 KIPKSIEDIGI---LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLV--VGTGP 191
Query: 89 TGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY--------LADQAGGF 136
G+ + G ++ + + + V+ Y L D G F
Sbjct: 192 IGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKF 247
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 30.8 bits (70), Expect = 0.32
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 75 TPGKSVLIETTGGNTGIGLAFI---AALRGYKLII 106
+ L+ TGGN GIGLA + L +++
Sbjct: 2 SGIHVALV--TGGNKGIGLAIVRDLCRLFSGDVVL 34
>3arx_A Chitinase A; TIM barrel, inhibitor complex, glycosidase, hydrolase,
hydro hydrolase inhibitor complex; HET: POY; 1.16A
{Vibrio harveyi} PDB: 3aro_A* 3arp_A* 3arr_A* 3arv_A*
3arw_A* 3arq_A* 3ary_A* 3arz_A* 3b8s_A 3b9e_A 3b9a_A*
3b9d_A 3as2_A* 3ars_A* 3art_A* 3as0_A* 3as1_A* 3aru_A*
3as3_A*
Length = 584
Score = 31.0 bits (70), Expect = 0.35
Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 11/84 (13%)
Query: 135 GFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTG 194
GF I E + S N F Q + D G
Sbjct: 170 GFIPICGPNESVKSVGGNSFNALQTACRGVN------DYEVVIHDPWAAYQKSFPQAGHE 223
Query: 195 GTVTGSGRF-----LKEKNPNIKV 213
+ G + LK++NP++K+
Sbjct: 224 YSTPIKGNYAMLMALKQRNPDLKI 247
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 30.3 bits (69), Expect = 0.42
Identities = 6/33 (18%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 77 GKSVLIETTGGNTGIGLAFIAAL--RGYKLIIV 107
K++L+ GG+ +G + + + I +
Sbjct: 22 SKNILV--LGGSGALGAEVVKFFKSKSWNTISI 52
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.44
Identities = 47/260 (18%), Positives = 72/260 (27%), Gaps = 106/260 (40%)
Query: 38 GCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGK--SV----------LIETT 85
G A P S + S+++D+ E P S+ + T
Sbjct: 307 GVRCYEAY------PNTS----LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 86 GGNT--------GIGL-----AFI-----AALRGYKLI---IVMPS------IASMER-- 116
N+ I L + +L G L PS I ER
Sbjct: 357 --NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 117 RIVLRAL--GA---EVYLADQAGGFEGILRKGEEILS---------NTPNGFMFRQFENP 162
+ R L + L + L K + +T +G R
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474
Query: 163 ANPKI---------HYETT-----------GPEIWKDSGGDVDILVAGIG--TGGTVTGS 200
+ +I +ETT GP GG +G+G T G+
Sbjct: 475 ISERIVDCIIRLPVKWETTTQFKATHILDFGP------GG-----ASGLGVLTHRNKDGT 523
Query: 201 G-RFLK----EKNPNIKVYG 215
G R + + NP+ YG
Sbjct: 524 GVRVIVAGTLDINPDDD-YG 542
Score = 28.9 bits (64), Expect = 1.9
Identities = 26/145 (17%), Positives = 40/145 (27%), Gaps = 53/145 (36%)
Query: 109 PSIASMERRIVLRALGAEVYLADQ-----AGGFEGILRKGEEILSNTPNGFMFRQFENPA 163
P+ E +V + LG Y++ G F+ +L +FEN
Sbjct: 54 PT-TPAE--LVGKFLG---YVSSLVEPSKVGQFDQVLN------------LCLTEFEN-- 93
Query: 164 NPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVY--------- 214
Y G D+ L A + T L + IK Y
Sbjct: 94 ----CYL---------EGNDIHALAAKLLQENDTT-----LVKTKELIKNYITARIMAKR 135
Query: 215 -GVEPTESAMLNGGQPGRLLFFLFF 238
+ + SA+ G F
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIF 160
Score = 27.7 bits (61), Expect = 5.2
Identities = 26/123 (21%), Positives = 35/123 (28%), Gaps = 30/123 (24%)
Query: 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRI--VLRAL-- 123
A+ G TPG+ L G TG + A+ I S S + + L
Sbjct: 253 AKLLGF-TPGE--LRSYLKGATGHSQGLVTAV----AIAETDSWESFFVSVRKAITVLFF 305
Query: 124 -GAEVYLADQAGGFE-GILRKGEEILSNTPNGFMF-------RQFE------N---PANP 165
G Y A IL E P M Q + N PA
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVP-SPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 166 KIH 168
++
Sbjct: 365 QVE 367
Score = 27.3 bits (60), Expect = 6.4
Identities = 22/132 (16%), Positives = 37/132 (28%), Gaps = 57/132 (43%)
Query: 60 IALSMIKDAEEKGLITPGKSVLIETTGGNTG--IG----LAFIA------------ALRG 101
+ + +D + KGLI P + G +G LA +A RG
Sbjct: 1739 MEKAAFEDLKSKGLI-PADATFA-------GHSLGEYAALASLADVMSIESLVEVVFYRG 1790
Query: 102 ----------------YKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEE 145
Y +I + P + AL V E + ++
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPG--RVAASFSQEALQYVV---------ERVGKRTGW 1839
Query: 146 ILS----NTPNG 153
++ N N
Sbjct: 1840 LVEIVNYNVENQ 1851
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 30.3 bits (69), Expect = 0.44
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 77 GKSVLIETTGGNTGIGLAFIAAL--RGYKLIIVMPSIASMERRIVLRALGAEV 127
K+V+ GIGL L R K +++ + + L+A+ +V
Sbjct: 5 NKNVIF--VAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKV 55
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane
protein complex, preprotein TRAN membrane insertion,;
2.90A {Pyrococcus furiosus}
Length = 482
Score = 30.7 bits (70), Expect = 0.45
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 213 VYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFFFS-FW 249
V V P + P R + +L F F W
Sbjct: 329 VLYVIPPRNIFSVIDNPVRAIVYLILTVIFSLLFGYLW 366
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 30.1 bits (69), Expect = 0.54
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 85 TGGNTGIGLAFIAAL--RGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRK 142
TGG+ GIG A AL RGY++ I + + + L ++ D G + L
Sbjct: 8 TGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLGAVPLPTDLEKDDPKGLVKRALEA 67
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 30.3 bits (69), Expect = 0.56
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 77 GKSVLIETTGGNTGIGLAFIAAL--RGYKLIIVMPSIASMERRI-VLRALG--AEVYLAD 131
GK L+ TG + GIG A +A G ++ + ++R + +A G A Y+ D
Sbjct: 34 GKIALV--TGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKAAGINAHGYVCD 91
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 29.8 bits (68), Expect = 0.64
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 77 GKSVLIETTGGNTGIGLAFIAAL--RGYKLIIVMPSIASMER-RIVLRALG-AEVYLAD 131
G+ L+ TGG+ GIG L G ++ I + L A G + AD
Sbjct: 29 GRIALV--TGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPAD 85
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 29.6 bits (67), Expect = 0.71
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 78 KSVLIETTGGNTGIGLAFIAAL 99
S+LI TG N G+GL + AL
Sbjct: 22 NSILI--TGCNRGLGLGLVKAL 41
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 29.6 bits (67), Expect = 0.74
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 78 KSVLIETTGGNTGIGLAFIAAL 99
SV++ TG N GIGL + L
Sbjct: 4 GSVVV--TGANRGIGLGLVQQL 23
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 29.8 bits (68), Expect = 0.78
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 77 GKSVLIETTGGNTGIGLAFIA---ALRGYKLIIVMPSIASMERRIVLRALGAEV 127
GK ++ GG G+GLA G ++++ + +++ R + G V
Sbjct: 8 GKKAIV--IGGTHGMGLA-TVRRLVEGGAEVLLTGRNESNIAR--IREEFGPRV 56
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 29.8 bits (68), Expect = 0.78
Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 23/55 (41%)
Query: 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131
K +I TG +GIGLA AA R A GA V++
Sbjct: 29 AKIAVI--TGATSGIGLA--AAKR-------------------FVAEGARVFITG 60
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 29.5 bits (67), Expect = 0.79
Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 77 GKSVLIETTGGNTGIGLAFIA---ALRGYKLIIVMPSIASMERRIVLRALGAEV 127
+++ TG +G+G A + RG+++ ++ +++ LG V
Sbjct: 3 LGHIIV--TGAGSGLGRA-LTIGLVERGHQVSMMGRRYQRLQQ--QELLLGNAV 51
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 29.2 bits (66), Expect = 0.87
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 77 GKSVLIETTGGNTGIGLAFIAAL-RGYKLIIV 107
+L+ G + +G A L + ++I
Sbjct: 3 AMKILL--IGASGTLGSAVKERLEKKAEVITA 32
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 29.6 bits (67), Expect = 0.90
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 77 GKSVLIETTGGNTGIGLAFIAAL--RGYKLIIV 107
V++ GG +G A + GY ++ +
Sbjct: 3 SGKVIV--YGGKGALGSAILEFFKKNGYTVLNI 33
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 29.5 bits (66), Expect = 1.0
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 61 ALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVL 120
AL M++ + +++ N G L I G KL+ + + E+ +L
Sbjct: 160 ALGMVETMRLE----GHSALVHTAAASNLGQMLNQICLKDGIKLVNI---VRKQEQADLL 212
Query: 121 RALGAEVYLADQAGGFEGILRK 142
+A GA + F L +
Sbjct: 213 KAQGAVHVCNAASPTFMQDLTE 234
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 29.0 bits (66), Expect = 1.1
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 77 GKSVLIETTGGNTGIGLAFIAAL--RGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131
G L+ TG GIG + AL G K++ V + + + + G E D
Sbjct: 7 GLRALV--TGAGKGIGRDTVKALHASGAKVVAVTRTNSDLV-SLAKECPGIEPVCVD 60
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 29.0 bits (66), Expect = 1.1
Identities = 19/123 (15%), Positives = 36/123 (29%), Gaps = 42/123 (34%)
Query: 77 GKSVLIETTGGNTGIGLAFIAAL--RGYKLIIVMPSIASMERRIV--LRALG--AEVYLA 130
G+ L+ TGG+ G+G L G +++ ++ G +
Sbjct: 21 GRVALV--TGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRC 78
Query: 131 DQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILV-- 188
D + EE+ + + + G +D +V
Sbjct: 79 D--------VSNYEEVKK------LLEAVK------------------EKFGKLDTVVNA 106
Query: 189 AGI 191
AGI
Sbjct: 107 AGI 109
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 28.7 bits (65), Expect = 1.5
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 77 GKSVLIETTGGNTGIGLAFIA---ALRGYKLIIV 107
GK ++ TG +GIGL IA A +G +++
Sbjct: 4 GKVAVV--TGSTSGIGLG-IATALAAQGADIVLN 34
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 28.7 bits (65), Expect = 1.5
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 77 GKSVLIETTGGNTGIGLAFIA---ALRGYKLIIV 107
+I TG + GIG IA A GY+++++
Sbjct: 7 KGLAII--TGASQGIGAV-IAAGLATDGYRVVLI 37
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 28.6 bits (65), Expect = 1.5
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 77 GKSVLIETTGGNTGIGLAFIAAL--RGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131
G+ VL+ TG GIG + AL G +++ V + A ++ +V G E D
Sbjct: 7 GRRVLV--TGAGKGIGRGTVQALHATGARVVAVSRTQADLD-SLVRECPGIEPVCVD 60
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 28.5 bits (63), Expect = 1.5
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 198 TGSGRFLKE---KNPNIKVYGVEPTESAMLN 225
TG G+ + +NP+ V ++ +S M
Sbjct: 36 TGDGKHPYKVARQNPSRLVVALDADKSRMEK 66
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 28.7 bits (65), Expect = 1.7
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 70 EKGLITPGKSVLIETTGGNTGIGLAFI--AALRGYKLIIVMPSIASMERRIVLRALGAEV 127
+K + PG VL+ G G+ +A I A L G ++I S + R +ALGA+
Sbjct: 160 DKLGVRPGDDVLVMAAGS--GVSVAAIQIAKLFGARVIATAGSEDKLRR---AKALGADE 214
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 28.5 bits (64), Expect = 2.0
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 77 GKSVLIETTGGNTGIG--LAFIAALRGYKLIIV---MPSIASMERRIVLRALGAEV 127
G++ + TGG G+G L +G K+ I SI + G EV
Sbjct: 8 GRTAFV--TGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEV 61
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 28.7 bits (63), Expect = 2.1
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 181 GGDVDILVAGIGTGGTVTGSG------RFLKEKNPNIKVYGV 216
VD + +G GG G+G + ++E+ V +
Sbjct: 145 EVIVDQFLICLGAGGG-VGTGWGSLVLQLIREQFFPCPVSML 185
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 28.3 bits (64), Expect = 2.1
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 8/35 (22%)
Query: 77 GKSVLIETTGGNTGIGLAFIAALR----GYKLIIV 107
K +I TG + GIG A A+ G K+ I
Sbjct: 6 EKVAII--TGSSNGIGRA--TAVLFAREGAKVTIT 36
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 28.0 bits (62), Expect = 2.5
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 199 GSGRFLKE-KNPNIKVYGVEPTESA 222
G G FL+ K I+ GV+ E
Sbjct: 51 GRGEFLELCKEEGIESIGVDINEDM 75
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 28.3 bits (64), Expect = 2.5
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 77 GKSVLIETTGGNTGIGLAFIA---ALRGYKLIIVMPSIASMERRIVLRA 122
+SVL+ TGGN GIGLA IA A G K+ I S E + ++
Sbjct: 21 SRSVLV--TGGNRGIGLA-IARAFADAGDKVAITYRSGEPPEGFLAVKC 66
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 28.2 bits (62), Expect = 2.5
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 177 WKDSGGDVDILVAGIGTGGTVTGSGRFLKE---KNPNIKVYGVEPTESAM 223
+ G D + +GTG GR + + + N G++P + +
Sbjct: 17 LTEIIGQFDRVHIDLGTG-----DGRNIYKLAINDQNTFYIGIDPVKENL 61
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.5
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 13 KRAIKKDATQL----IGNTPMVYLNNVVD 37
K+A+KK L + P + + ++
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 27.9 bits (63), Expect = 2.7
Identities = 31/121 (25%), Positives = 42/121 (34%), Gaps = 41/121 (33%)
Query: 77 GKSVLIETTGGNTGIGLAFIA---ALRGYKLIIV-MPSIASMERRIVLRALGAEVYLADQ 132
GK+ L+ TG +GIGL IA A G +++ A I + A + AD
Sbjct: 4 GKTALV--TGSTSGIGLG-IAQVLARAGANIVLNGFGDPAPALAEIARHGVKAVHHPAD- 59
Query: 133 AGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILV--AG 190
L +I + +F E G VDILV AG
Sbjct: 60 -------LSDVAQIEA------LFALAE------------------REFGGVDILVNNAG 88
Query: 191 I 191
I
Sbjct: 89 I 89
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 28.3 bits (64), Expect = 2.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 86 GGNTGIGLAFIAALRGYKLIIV 107
GG G G+A AA RG ++++
Sbjct: 11 GGINGAGIAADAAGRGLSVLML 32
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 28.2 bits (63), Expect = 2.9
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 77 GKSVLIETTGGNTGIGLAFIAAL--RGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG 134
K +LI TG ++G G AL G+++ ASM R IV R +A A
Sbjct: 5 KKIILI--TGASSGFGRLTAEALAGAGHRV------YASM-RDIVGRNASNVEAIAGFAR 55
Query: 135 GFEGILR 141
+ LR
Sbjct: 56 DNDVDLR 62
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY,
membrane protein, protein channels, protein transport;
3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1
PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Length = 436
Score = 27.9 bits (63), Expect = 3.0
Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 1/64 (1%)
Query: 187 LVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFFF 246
L + G + + + Y + P + ++ + C F
Sbjct: 271 LWGLALYRMGIPILGHYEGGRAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMF 330
Query: 247 S-FW 249
FW
Sbjct: 331 GIFW 334
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 27.8 bits (63), Expect = 3.3
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 77 GKSVLIETTGGNTGIGLAFIAAL--RGYKLIIVMPSIASMERRIV-LRALGAEVY 128
G + L+ TGG+ GIG + L G + + + + R+ G +V
Sbjct: 9 GCTALV--TGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVE 61
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 27.9 bits (63), Expect = 3.3
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 77 GKSVLIETTGGNTGIGLAFIAAL--RGYKLIIVMPSIASMERRI-VLRALG--AEVYLAD 131
GK LI TG +TGIG A G ++ + +++ + +G A D
Sbjct: 32 GKRALI--TGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCD 89
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 27.5 bits (62), Expect = 3.4
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 6/33 (18%)
Query: 77 GKSVLIETTGGNTGIGLAFIA---ALRGYKLII 106
+ L+ TGG+ GIG A + +I
Sbjct: 4 MANYLV--TGGSKGIGKA-VVELLLQNKNHTVI 33
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 27.6 bits (62), Expect = 3.4
Identities = 27/123 (21%), Positives = 35/123 (28%), Gaps = 41/123 (33%)
Query: 77 GKSVLIETTGGNTGIGLAFIA---ALRGYKLIIV---MPSIASMERRIVLRALGAEVYLA 130
K+ +I TG +GIGLA IA A G +++ P V
Sbjct: 25 TKTAVI--TGSTSGIGLA-IARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGT---- 77
Query: 131 DQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILV-- 188
+ K EI M D G DILV
Sbjct: 78 --VLHHPADMTKPSEIAD------MMAMVA------------------DRFGGADILVNN 111
Query: 189 AGI 191
AG+
Sbjct: 112 AGV 114
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 28.0 bits (63), Expect = 3.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 86 GGNTGIGLAFIAALRGYK 103
GG TG G+A A +RG +
Sbjct: 26 GGITGAGIALDAQVRGIQ 43
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 27.4 bits (61), Expect = 3.9
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 186 ILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225
IL G GTG FL EK P V+ +E ML
Sbjct: 48 ILDLGAGTGLLS----AFLMEKYPEATFTLVDMSE-KMLE 82
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane,
phospho signal sequence, membrane, ribosome, transport;
8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Length = 490
Score = 27.7 bits (61), Expect = 3.9
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 214 YGVEPTESAMLNGGQPGRLLFFLFFLFFFCFFFS-FW 249
PT QP + + F+ +F+ W
Sbjct: 349 LLAPPTSFFKGVTQQPLTFITYSAFILVTGIWFADKW 385
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome,
protein EXIT tunnel, cotranslational protein
translocation, protein conducting channel; 6.48A {Canis
lupus familiaris}
Length = 476
Score = 27.6 bits (61), Expect = 4.0
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 213 VYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFFFSF 248
+ + P ES P + ++ F+ C FFS
Sbjct: 342 CHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSK 377
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 27.5 bits (62), Expect = 4.0
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 6/33 (18%)
Query: 77 GKSVLIETTGGNTGIGLAFIA---ALRGYKLII 106
+SVL+ TGGN GIGLA IA A G+K+ +
Sbjct: 15 SRSVLV--TGGNRGIGLA-IAQRLAADGHKVAV 44
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 27.6 bits (62), Expect = 4.0
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 70 EKGLITPGKSVLIETTGGNTGIGLAF--IAALRGYKLIIVMPSIASMERRIVLRALGAE 126
EKG + G V+++ TG G+ L IA G ++I+ S ++R ALGA+
Sbjct: 183 EKGHLRAGDRVVVQGTG---GVALFGLQIAKATGAEVIVTSSSREKLDR---AFALGAD 235
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 27.7 bits (62), Expect = 4.0
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 78 KSVLIETTGGNTGIGLAFIAAL-----RGYKLIIVMPSIASMERRIVLRALGAEV 127
VLI TG ++GIGL L + +K+ + + + R L +
Sbjct: 3 TVVLI--TGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGR---LWEAARAL 52
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 27.5 bits (62), Expect = 4.1
Identities = 10/23 (43%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 77 GKSVLIETTGGNTGIGLAFIAAL 99
GK LI TG GIG A
Sbjct: 20 GKRALI--TGATKGIGADIARAF 40
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 27.6 bits (62), Expect = 4.2
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Query: 77 GKSVLIETTGGNTGIGLAFIA---ALRGYKLIIV 107
K I TGG +GIG IA G +I
Sbjct: 27 DKVAFI--TGGGSGIGFR-IAEIFMRHGCHTVIA 57
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 27.7 bits (62), Expect = 4.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 86 GGNTGIGLAFIAALRGYK 103
GG TG G+A AA G K
Sbjct: 40 GGITGAGVAVQAAASGIK 57
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 27.2 bits (61), Expect = 4.6
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 77 GKSVLIETTGGNTGIGLAFIA---ALRGYKLIIV 107
GKSV+I TG + GIG + A A G ++ I
Sbjct: 26 GKSVII--TGSSNGIGRS-AAVIFAKEGAQVTIT 56
>3din_C Preprotein translocase subunit SECY; protein translocation,
membrane protein, ATPase, ATP-binding membrane,
nucleotide-binding, protein transport; HET: ADP; 4.50A
{Thermotoga maritima MSB8}
Length = 431
Score = 27.5 bits (62), Expect = 4.7
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 221 SAMLNGGQPGRLLFFLFFLFFFCFF 245
+ G LL + +FFF +F
Sbjct: 296 KNLFRAGGFLYLLIYGLLVFFFTYF 320
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 27.1 bits (61), Expect = 5.1
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 77 GKSVLIETTGGNTGIGLAFIAAL--RGYKLIIVMPSIASMERRIV-LRALGAEV 127
+ ++ TGG IGLA + AL G ++II A + + LR G +V
Sbjct: 13 NRVAIV--TGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDV 64
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 27.2 bits (61), Expect = 5.3
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 6/34 (17%)
Query: 77 GKSVLIETTGGNTGIGLAFIA---ALRGYKLIIV 107
GK +L+ TG + GIG + I ++
Sbjct: 2 GKVILV--TGVSRGIGKS-IVDVLFSLDKDTVVY 32
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 26.9 bits (60), Expect = 5.6
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 7/36 (19%)
Query: 77 GKSVLIETTGGNTGIGLAFIAAL-----RGYKLIIV 107
++ TG + G G A L G +++
Sbjct: 6 CAVCVL--TGASRGFGRALAPQLARLLSPGSVMLVS 39
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 27.1 bits (61), Expect = 5.7
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 77 GKSVLIETTGGNTGIGLAFIA---ALRGYKLIIVMPSIASMERRIV--LRALGAEV 127
GK VLI TG + GIGLA A A G K+ + + + +RA G +
Sbjct: 7 GKRVLI--TGSSQGIGLA-TARLFARAGAKVGLHGRKAPANIDETIASMRADGGDA 59
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 27.2 bits (61), Expect = 5.9
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Query: 77 GKSVLIETTGGNTGIGLAFIA---ALRGYKLIIV 107
K+V+I TG + GIG A A G + I
Sbjct: 6 NKTVII--TGSSNGIGRT-TAILFAQEGANVTIT 36
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC,
protein-conducting-channel, membrane, prote transport,
translocation, transmembrane, transport; 3.20A {Thermus
thermophilus} PDB: 2zqp_Y
Length = 434
Score = 27.1 bits (61), Expect = 5.9
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 221 SAMLNGGQPGRLLFFLFFLFFFCFF 245
+ N +P L + + F +
Sbjct: 301 ANFFNPTRPSGLFIEVLLVILFTYV 325
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane
protein translocation protein- protein complex,
ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Length = 429
Score = 27.1 bits (61), Expect = 6.2
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 221 SAMLNGGQPGRLLFFLFFLFFFCFF 245
+ M G ++ F+ FF +F
Sbjct: 301 ADMFQPGAIFYNFLYVTFIVFFTYF 325
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 26.8 bits (60), Expect = 6.5
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 77 GKSVLIETTGGNTGIGLAFIAAL 99
GK I TGG TG+G L
Sbjct: 26 GKVAFI--TGGGTGLGKGMTTLL 46
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 26.7 bits (60), Expect = 6.8
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 77 GKSVLIETTGGNTGIGLAFIA---ALRGYKLIIVMPSIASMERRI-VLRALGAEV 127
G + L+ TGG+ GIG A I A G ++ + ++ + + R G V
Sbjct: 21 GTTALV--TGGSKGIGYA-IVEELAGLGARVYTCSRNEKELDECLEIWREKGLNV 72
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 26.8 bits (60), Expect = 6.9
Identities = 7/57 (12%), Positives = 15/57 (26%), Gaps = 9/57 (15%)
Query: 78 KSVLIETTGGNTGIGLAFIA---ALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131
+ ++ T G+ A + G+ + S + L A
Sbjct: 2 STAIV--TNVKHFGGMG-SALRLSEAGHTVACHDESFKQKDE---LEAFAETYPQLK 52
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein,
nucleotide-binding, PR biosynthesis, translation,
zinc-finger, 70S ribosome, ribos translocon; 7.10A
{Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Length = 435
Score = 27.1 bits (61), Expect = 6.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 221 SAMLNGGQPGRLLFFLFFLFFFCFF 245
S L GQP +L + + FFCFF
Sbjct: 300 SLYLQPGQPLYVLLYASAIIFFCFF 324
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 26.7 bits (60), Expect = 6.9
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 8/35 (22%)
Query: 77 GKSVLIETTGGNTGIGLAFIAALR----GYKLIIV 107
GK ++ TG ++GIG A AAL G K+++
Sbjct: 8 GKIAIV--TGASSGIGRA--AALLFAREGAKVVVT 38
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 26.9 bits (60), Expect = 7.1
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 77 GKSVLIETTGGNTGIGLAFIAAL--RGYKLIIV 107
G++ ++ TGG +GIGLA RG +L++
Sbjct: 31 GRAAVV--TGGASGIGLATATEFARRGARLVLS 61
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 26.9 bits (60), Expect = 7.2
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 199 GS--GRFLKE-KNPNIKVYGVEPTES 221
G G L+ + ++ G EP+
Sbjct: 115 GCNDGIMLRTIQEAGVRHLGFEPSSG 140
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 26.8 bits (60), Expect = 7.5
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 77 GKSVLIETTGGNTGIGLAFIAAL--RGYKLIIVMPSIASMER-RIVLRALG--AEVYLAD 131
GK + TG + GIG A A G + I S + E+ + + G ++ Y +
Sbjct: 34 GKVASV--TGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCN 91
>3kya_A Putative phosphatase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.77A {Bacteroides
thetaiotaomicron}
Length = 496
Score = 26.8 bits (58), Expect = 7.8
Identities = 15/119 (12%), Positives = 36/119 (30%), Gaps = 5/119 (4%)
Query: 84 TTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKG 143
T N +AF + GY +A + + + G F+
Sbjct: 182 TIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQ 241
Query: 144 EEILSNTPNGFMFRQFENPANPKIHYETTGP-EIWKDSGGDVDILVAGIGTGGTVTGSG 201
NG +P N ++++ + ++++ D + G+ + +
Sbjct: 242 LIAAYKQCNGATI----HPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296
>3tg7_A Hexon protein, late protein 2; adenovirus structural protein, with
NEW finding featuring PO binding to human coagulation
factor X; 1.57A {Human adenovirus 5} PDB: 2bvi_F 1p30_A
1vsz_A 3iyn_A 1p2z_A* 2obe_A
Length = 951
Score = 26.9 bits (59), Expect = 7.8
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 193 TGGTVTGSGRFLKEKNPNIKVYG--VEPTESAMLNGGQ 228
+GR LK+ P YG +PT NGGQ
Sbjct: 212 ETEINHAAGRVLKKTTPMKPCYGSYAKPTNE---NGGQ 246
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 26.4 bits (59), Expect = 7.9
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 77 GKSVLIETTGGNTGIGLAFIAALR 100
G+ LI TGG +G+G A R
Sbjct: 5 GEVALI--TGGASGLGRA--LVDR 24
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 26.5 bits (59), Expect = 8.1
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 21/47 (44%)
Query: 85 TGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131
+G TGIG A + L A G ++ D
Sbjct: 7 SGCATGIGAA-TRKV--------------------LEAAGHQIVGID 32
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 26.4 bits (59), Expect = 8.7
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 77 GKSVLIETTGGNTGIGLAFIA---ALRGYKLIIVMPSIASMERRIV--LRALG--AEVYL 129
K++++ TGGN GIGLA A G + ++ S A + G + Y
Sbjct: 14 NKTIIV--TGGNRGIGLA-FTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQ 70
Query: 130 AD 131
D
Sbjct: 71 CD 72
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition
domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus
fulgidus} SCOP: c.37.1.19
Length = 237
Score = 26.2 bits (58), Expect = 9.0
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 77 GKSVLIETTG-GNTGIGLAFIAALRGYKLIIVMPSIASME 115
+ ++ TG G T + +A I L LI+V P++A E
Sbjct: 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVV-PTLALAE 147
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 26.4 bits (58), Expect = 9.8
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 8/45 (17%)
Query: 152 NGFMFRQFENPANPKIH-YETTGPEIWKDSGGDVDILVAGIG-TG 194
NGF P NP I P + VD+L+ G G G
Sbjct: 6 NGF------RPGNPLIAPASPLAPAHTEAVPSQVDVLIVGCGPAG 44
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 26.5 bits (59), Expect = 9.8
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 6/34 (17%)
Query: 77 GKSVLIETTGGNTGIGLAFIA---ALRGYKLIIV 107
GK++ I +GG+ GIGLA IA A G + +V
Sbjct: 9 GKTMFI--SGGSRGIGLA-IAKRVAADGANVALV 39
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 26.3 bits (59), Expect = 9.9
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 77 GKSVLIETTGGNTGIGLAFIA---ALRGYKLIIVMPSIASMERRIV-LRALGAEVY 128
K+VL+ TGG GIG A I A G + + + + + G +V
Sbjct: 14 AKTVLV--TGGTKGIGHA-IVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVT 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.141 0.423
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,077,574
Number of extensions: 264287
Number of successful extensions: 1148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1086
Number of HSP's successfully gapped: 196
Length of query: 251
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 160
Effective length of database: 4,160,982
Effective search space: 665757120
Effective search space used: 665757120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.1 bits)