BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025564
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HX1|A Chain A, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
pdb|2HX1|B Chain B, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
pdb|2HX1|C Chain C, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
pdb|2HX1|D Chain D, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
Length = 284
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 20/207 (9%)
Query: 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTI-DKLKSLGF 87
++K D FGVL PG +T + L G +++N + R+ + D LG
Sbjct: 13 KYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGL 72
Query: 88 DPSLFAGAITSGELTHQYL-LRRDDAWFAALGR-SCIHMTWSDRGAISLEGLGLKVVE-- 143
I+SG +T +Y+ L+ D A LG + + SD ++ L + ++
Sbjct: 73 FSITADKIISSGXITKEYIDLKVDGGIVAYLGTANSANYLVSD----GIKXLPVSAIDDS 128
Query: 144 NVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVT-VEARA 202
N+ E + ++ EG DL K + + + IP +VAN D +
Sbjct: 129 NIGEVNALVLLDDEGFNW---------FHDLNKTVNLLRKRTIPAIVANTDNTYPLTKTD 179
Query: 203 LRVMPGTLASKFEK-LGGEVRWMGKPD 228
+ + G +A+ E LG GKPD
Sbjct: 180 VAIAIGGVATXIESILGRRFIRFGKPD 206
>pdb|2CFR|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase
Length = 298
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
R + L D GVL +G++ PGA LE LA G + +SN+SRRA + + LGF
Sbjct: 20 RAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGF 79
Query: 88 D----PSLFAGAITSGELTHQYL 106
LF+ A+ + L Q L
Sbjct: 80 GGLRAEQLFSSALCAARLLRQRL 102
>pdb|2OYC|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
pdb|2P27|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
With Mg2+ At 1.9 A Resolution
pdb|2P69|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
With Plp
Length = 306
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
R + L D GVL +G++ PGA LE LA G + +SN+SRRA + + LGF
Sbjct: 20 RAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGF 79
Query: 88 D----PSLFAGAITSGELTHQYL 106
LF+ A+ + L Q L
Sbjct: 80 GGLRAEQLFSSALCAARLLRQRL 102
>pdb|2CFS|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase
pdb|2CFT|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase With Its Substrate
Length = 298
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
R + L D GVL +G++ PGA LE LA G + +SN+SRRA + + LGF
Sbjct: 20 RAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGF 79
Query: 88 D----PSLFAGAITSGELTHQYL 106
LF+ A+ + L Q L
Sbjct: 80 GGLRAEQLFSSALCAARLLRQRL 102
>pdb|1VJR|A Chain A, Crystal Structure Of 4-nitrophenylphosphatase (tm1742)
From Thermotoga Maritima At 2.40 A Resolution
Length = 271
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVIS-NSSRRASTTIDKLKSLGF 87
+ + ++LD G + PG++ LE L + V + NSS A + KL++ G
Sbjct: 16 KIELFILDXDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNXGV 75
Query: 88 D-PSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVE 146
D P +TSGE+T ++ L+R GR I + + + E G + E E
Sbjct: 76 DVPD--DAVVTSGEITAEHXLKR-------FGRCRIFLLGTPQLKKVFEAYGHVIDE--E 124
Query: 147 EADFIL 152
DF++
Sbjct: 125 NPDFVV 130
>pdb|1PW5|A Chain A, Putative Nagd Protein
Length = 253
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVIS-NSSRRASTTIDKLKSLGF 87
+ + ++LD G + PG++ LE L + V + NSS A + KL++ G
Sbjct: 4 KIELFILDXDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNXGV 63
Query: 88 D-PSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVE 146
D P +TSGE+T ++ L+R GR I + + + E G + E E
Sbjct: 64 DVPD--DAVVTSGEITAEHXLKR-------FGRCRIFLLGTPQLKKVFEAYGHVIDE--E 112
Query: 147 EADFIL 152
DF++
Sbjct: 113 NPDFVV 118
>pdb|3PDW|A Chain A, Crystal Structure Of Putative P-Nitrophenyl Phosphatase
From Bacillus Subtilis
Length = 266
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 15/128 (11%)
Query: 28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAK-MVVISNSSRRASTTIDKLKSLG 86
+ +K +L+D G +++G + A + L G + V +NSSR DKL S
Sbjct: 4 KTYKGYLIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVS-- 61
Query: 87 FD-PSLFAGAITSGELTHQYLL-RRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVEN 144
FD P+ T+ T Q++ ++ DA +G I R AI GL
Sbjct: 62 FDIPATEEQVFTTSMATAQHIAQQKKDASVYVIGEEGI------RQAIEENGLTF----G 111
Query: 145 VEEADFIL 152
E ADF++
Sbjct: 112 GENADFVV 119
>pdb|3QGM|A Chain A, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|B Chain B, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|C Chain C, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|D Chain D, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
Length = 268
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 31 KAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTT-IDKLKSLGFD 88
K +++D GV+ P P + ++ L G K++ +SN+S R+ +++L+S G +
Sbjct: 9 KGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLE 67
>pdb|1ZJJ|A Chain A, Crystal Structure Of Hypothetical Protein Ph1952 From
Pyrococcus Horikoshii Ot3
pdb|1ZJJ|B Chain B, Crystal Structure Of Hypothetical Protein Ph1952 From
Pyrococcus Horikoshii Ot3
Length = 263
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 32 AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTI-DKLKSLGFDPS 90
A + D GVL+ G + PG +E L G ++N+S + +KL +G D S
Sbjct: 3 AIIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDVS 62
Query: 91 LFAGAITSGELTHQYLLRRDD 111
+ ITSG T Y+ + D
Sbjct: 63 -SSIIITSGLATRLYMSKHLD 82
>pdb|2HO4|A Chain A, Crystal Structure Of Protein From Mouse Mm.236127
pdb|2HO4|B Chain B, Crystal Structure Of Protein From Mouse Mm.236127
Length = 259
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 25 AETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTT-IDKLK 83
A R KA L+D G LH PGA L+ L T + ++N+++ +++LK
Sbjct: 2 AARRALKAVLVDLNGTLHIEDAAVPGAQEALKRLRATSVXVRFVTNTTKETKKDLLERLK 61
Query: 84 SLGFDPS---LFAGAITSGELTHQYLLR 108
L F+ S +F + L Q +R
Sbjct: 62 KLEFEISEDEIFTSLTAARNLIEQKQVR 89
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 33.9 bits (76), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%)
Query: 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100
KPYP TLE L + G K+ V+SN S I + +L L G T GE
Sbjct: 83 KPYPEIPYTLEALKSKGFKLAVVSNKLEELSKKILDILNLSGYFDLIVGGDTFGE 137
>pdb|2C07|A Chain A, Oxoacyl-Acp Reductase Of Plasmodium Falciparum
Length = 285
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 29/45 (64%)
Query: 56 EMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100
+MLA + + ++ IS + + + +D++KS G++ S +AG ++ E
Sbjct: 62 KMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKE 106
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%)
Query: 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100
KPYP TLE L + G K+ V+SN S I + +L L G T GE
Sbjct: 81 KPYPEIPYTLEALKSKGFKLAVVSNKLEELSKKILDILNLSGYFDLIVGGDTFGE 135
>pdb|3M9L|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5
pdb|2YBD|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5 With Bound Phosphate
pdb|3R09|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5 With Bound Mg
Length = 205
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 26 ETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR 73
E+ AWLL+ L G +P PGA+ + LA G ++ +++ ++R
Sbjct: 50 ESAAKHAWLLEHERDLAQGSRPAPGAVELVRELAGRGYRLGILTRNAR 97
>pdb|3HLT|A Chain A, The Crystal Structure Of Human Haloacid
Dehalogenase-Like Hydrolase Domain Containing 2 (Hdhd2)
pdb|3HLT|C Chain C, The Crystal Structure Of Human Haloacid
Dehalogenase-Like Hydrolase Domain Containing 2 (Hdhd2)
Length = 266
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 24 IAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTT-IDKL 82
+A R KA L+D G LH PGA L+ L + ++N+++ + +++L
Sbjct: 1 MAACRALKAVLVDLSGTLHIEDAAVPGAQEALKRLRGASVIIRFVTNTTKESKQDLLERL 60
Query: 83 KSLGFDPS 90
+ L FD S
Sbjct: 61 RKLEFDIS 68
>pdb|3KC2|A Chain A, Crystal Structure Of Mitochondrial Had-Like Phosphatase
From Saccharomyces Cerevisiae
pdb|3KC2|B Chain B, Crystal Structure Of Mitochondrial Had-Like Phosphatase
From Saccharomyces Cerevisiae
Length = 352
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 20 GLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS---SRRAS 76
G R T + A+ D GVL GKKP GA L++L ++++N S RA
Sbjct: 3 GKRFFQTTSKKIAFAFDIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERAR 62
Query: 77 T 77
T
Sbjct: 63 T 63
>pdb|1YUD|A Chain A, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|B Chain B, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|C Chain C, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|D Chain D, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|E Chain E, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|F Chain F, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|G Chain G, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|H Chain H, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|I Chain I, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|J Chain J, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12
Length = 170
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 71 SSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRG 130
SS R+ T D + L S + +GE++H + L D+ W+ G+S S G
Sbjct: 34 SSYRSETAFDPSRQLW---SSIYFLLRTGEVSHFHRLTADEXWYFHAGQSLTIYXISPEG 90
Query: 131 AISLEGLGLKVVENVEEADFILAHG 155
++ LGL + E F++ G
Sbjct: 91 ELTTAQLGLDLAAG-ERPQFLVPKG 114
>pdb|3EPR|A Chain A, Crystal Structure Of Putative Had Superfamily Hydrolase
From Streptococcus Agalactiae
Length = 264
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 28/53 (52%)
Query: 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKL 82
+K +L+D G ++ GK P +E L G ++++N++ R ++ ++
Sbjct: 5 YKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEM 57
>pdb|1YV9|A Chain A, Crystal Structure Of A Had-Like Phosphatase From
Enterococcus Faecalis V583
pdb|1YV9|B Chain B, Crystal Structure Of A Had-Like Phosphatase From
Enterococcus Faecalis V583
Length = 264
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 36/72 (50%)
Query: 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89
++ +L+D G ++ GK+P P +E L + ++N++ ++ T+ + + FD
Sbjct: 5 YQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDI 64
Query: 90 SLFAGAITSGEL 101
+ A + + L
Sbjct: 65 HVPASLVYTATL 76
>pdb|4AUB|A Chain A, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|B Chain B, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|C Chain C, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|D Chain D, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|E Chain E, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|F Chain F, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|G Chain G, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|H Chain H, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
Length = 366
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 18/113 (15%)
Query: 86 GFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVEN- 144
G+D ++ G SG + +YLL D +G + + +S R V EN
Sbjct: 119 GYD--MWPGPYGSGG-SRKYLLASLDQSLKRMGLEYVDIFYSHR-----------VDENT 164
Query: 145 -VEEADFILAHGTE-GMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDY 195
+EE LAH + G L G + S + +K++E+ KIP+++ P Y
Sbjct: 165 PMEETASALAHAVQSGKALYVG-ISSYSPERTQKMVELLREWKIPLLIHQPSY 216
>pdb|2YLL|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 454
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 11/115 (9%)
Query: 100 ELTHQYLLRRDDAWFAALGRSCIHMTWS--DRGAISLEGLGLKVVENVEEADFILAHGTE 157
E HQ +L +DAW+ LGR+ W D+G ++ + V E AD + G
Sbjct: 296 EKGHQ-ILNTNDAWYYVLGRNADGQGWYNLDQGLNGIKNTPITSVPKTEGADIPIIGGMV 354
Query: 158 G--MGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTL 210
PS P L K++ A+ A DY + E +AL +P L
Sbjct: 355 AAWADTPSARYSPSRLF---KLMRHFANANAEYFAA--DYESAE-QALNEVPKDL 403
>pdb|3N6Q|A Chain A, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|B Chain B, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|C Chain C, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|D Chain D, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|E Chain E, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|F Chain F, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|G Chain G, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|H Chain H, Crystal Structure Of Yghz From E. Coli
pdb|4AST|A Chain A, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|B Chain B, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|C Chain C, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|D Chain D, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|E Chain E, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|F Chain F, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|G Chain G, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|H Chain H, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
Length = 346
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 18/113 (15%)
Query: 86 GFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVEN- 144
G+D ++ G SG + +YLL D +G + + +S R V EN
Sbjct: 99 GYD--MWPGPYGSGG-SRKYLLASLDQSLKRMGLEYVDIFYSHR-----------VDENT 144
Query: 145 -VEEADFILAHGTE-GMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDY 195
+EE LAH + G L G + S + +K++E+ KIP+++ P Y
Sbjct: 145 PMEETASALAHAVQSGKALYVG-ISSYSPERTQKMVELLREWKIPLLIHQPSY 196
>pdb|2YL6|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 11/115 (9%)
Query: 100 ELTHQYLLRRDDAWFAALGRSCIHMTWS--DRGAISLEGLGLKVVENVEEADFILAHGTE 157
E HQ +L +DAW+ LGR+ W D+G ++ + V E AD + G
Sbjct: 276 EKGHQ-ILNTNDAWYYVLGRNADGQGWYNLDQGLNGIKNTPITSVPKTEGADIPIIGGMV 334
Query: 158 G--MGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTL 210
PS P L K++ A+ A DY + E +AL +P L
Sbjct: 335 AAWADTPSARYSPSRLF---KLMRHFANANAEYFAA--DYESAE-QALNEVPKDL 383
>pdb|2YL8|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 11/115 (9%)
Query: 100 ELTHQYLLRRDDAWFAALGRSCIHMTWS--DRGAISLEGLGLKVVENVEEADFILAHGTE 157
E HQ +L +DAW+ LGR+ W D+G ++ + V E AD + G
Sbjct: 276 EKGHQ-ILNTNDAWYYVLGRNADGQGWYNLDQGLNGIKNTPITSVPKTEGADIPIIGGMV 334
Query: 158 G--MGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTL 210
PS P L K++ A+ A DY + E +AL +P L
Sbjct: 335 AAWADTPSARYSPSRLF---KLMRHFANANAEYFAA--DYESAE-QALNEVPKDL 383
>pdb|3BXM|A Chain A, Structure Of An Inactive Mutant Of Human Glutamate
Carboxypeptidase Ii [gcpii(E424a)] In Complex With
N-Acetyl-Asp-Glu (Naag)
pdb|3SJE|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Aminononanoic Acid
pdb|3SJG|A Chain A, Human Glutamate Carboxypeptidase Ii (E424a Inactive Mutant
) In Complex With N-Acetyl-Aspartyl-Aminooctanoic Acid
pdb|3SJX|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Methionine
Length = 709
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 106 LLRRDDAWFAALGRSCIHMTWS------DRGAI-SLEGLGLKVVENVEEADFILAHG-TE 157
+L D A + A G W+ RG I +L G G + ++ G E
Sbjct: 185 ILYSDPADYFAPGVKSYPDGWNLPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRGIAE 244
Query: 158 GMGLPSGDVRPMSLQDLEKILE 179
+GLPS V P+ D +K+LE
Sbjct: 245 AVGLPSIPVHPIGYYDAQKLLE 266
>pdb|2XEF|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P8
pdb|2XEG|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P4
pdb|2XEJ|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Arm-M4, Urea-Based Inhibitor
Length = 709
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 106 LLRRDDAWFAALGRSCIHMTWS------DRGAI-SLEGLGLKVVENVEEADFILAHG-TE 157
+L D A + A G W+ RG I +L G G + ++ G E
Sbjct: 185 ILYSDPADYFAPGVKSYPDGWNLPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRGIAE 244
Query: 158 GMGLPSGDVRPMSLQDLEKILE 179
+GLPS V P+ D +K+LE
Sbjct: 245 AVGLPSIPVHPIGYYDAQKLLE 266
>pdb|2OOT|A Chain A, A High Resolution Structure Of Ligand-Free Human Glutamate
Carboxypeptidase Ii
pdb|2OR4|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii In Complex With Quisqualic Acid
pdb|2PVV|A Chain A, Structure Of Human Glutamate Carboxypeptidase Ii (Gcpii)
In Complex With L-Serine-O-Sulfate
pdb|2PVW|A Chain A, A High Resolution Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In Complex With
2-(Phosphonomethyl)pentanedioic Acid (2-Pmpa)
pdb|3BHX|A Chain A, X-ray Structure Of Human Glutamate Carboxypeptidase Ii
(gcpii) In Complex With A Transition State Analog Of
Asp-glu
pdb|3BI0|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Glu-Glu
pdb|3BI1|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Methotrexate-Glu
pdb|3D7D|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (gcpii) In A Complex With Dcfbd, A
Urea-based Inhibitor
pdb|3D7F|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcit, A
Urea-Based Inhibitor
pdb|3D7G|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcmc, A
Urea-Based Inhibitor
pdb|3D7H|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcibzl, A
Urea-Based Inhibitor
pdb|3IWW|A Chain A, Crystal Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In A Complex With Dbibzl, A Urea-Based Inhibitor
pdb|2XEI|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P2
pdb|3SJF|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii In
Complex With A Urea-Based Inhibitor (A25)
Length = 709
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 106 LLRRDDAWFAALGRSCIHMTWS------DRGAI-SLEGLGLKVVENVEEADFILAHG-TE 157
+L D A + A G W+ RG I +L G G + ++ G E
Sbjct: 185 ILYSDPADYFAPGVKSYPDGWNLPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRGIAE 244
Query: 158 GMGLPSGDVRPMSLQDLEKILE 179
+GLPS V P+ D +K+LE
Sbjct: 245 AVGLPSIPVHPIGYYDAQKLLE 266
>pdb|2C6C|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Gpi-18431
(S)-2-(4-Iodobenzylphosphonomethyl)- Pentanedioic Acid
pdb|2C6P|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Phosphate Anion
pdb|2JBJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With 2-Pmpa (2-Phosphonomethyl-Pentanedioic
Acid)
pdb|2JBK|A Chain A, Membrane-bound Glutamate Carboxypeptidase Ii (gcpii) In
Complex With Quisqualic Acid (quisqualate,
Alpha-amino-3,5- Dioxo-1,2,4-oxadiazolidine-2-propanoic
Acid)
pdb|2C6G|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Glutamate
pdb|2CIJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Methionine
Length = 707
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 106 LLRRDDAWFAALGRSCIHMTWS------DRGAI-SLEGLGLKVVENVEEADFILAHG-TE 157
+L D A + A G W+ RG I +L G G + ++ G E
Sbjct: 183 ILYSDPADYFAPGVKSYPDGWNLPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRGIAE 242
Query: 158 GMGLPSGDVRPMSLQDLEKILE 179
+GLPS V P+ D +K+LE
Sbjct: 243 AVGLPSIPVHPIGYYDAQKLLE 264
>pdb|1Z8L|A Chain A, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|B Chain B, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|C Chain C, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|D Chain D, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
Length = 695
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 106 LLRRDDAWFAALGRSCIHMTWS------DRGAI-SLEGLGLKVVENVEEADFILAHG-TE 157
+L D A + A G W+ RG I +L G G + ++ G E
Sbjct: 171 ILYSDPADYFAPGVKSYPDGWNLPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRGIAE 230
Query: 158 GMGLPSGDVRPMSLQDLEKILE 179
+GLPS V P+ D +K+LE
Sbjct: 231 AVGLPSIPVHPIGYYDAQKLLE 252
>pdb|3RBU|A Chain A, N-Terminally Avitev-Tagged Human Glutamate
Carboxypeptidase Ii In Complex With 2-Pmpa
Length = 739
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 106 LLRRDDAWFAALGRSCIHMTWS------DRGAI-SLEGLGLKVVENVEEADFILAHG-TE 157
+L D A + A G W+ RG I +L G G + ++ G E
Sbjct: 215 ILYSDPADYFAPGVKSYPDGWNLPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRGIAE 274
Query: 158 GMGLPSGDVRPMSLQDLEKILE 179
+GLPS V P+ D +K+LE
Sbjct: 275 AVGLPSIPVHPIGYYDAQKLLE 296
>pdb|3RF6|A Chain A, Crystal Structure Of Glycerol-3 Phosphate Bound Had-Like
Phosphatase From Saccharomyces Cerevisiae
pdb|3RF6|B Chain B, Crystal Structure Of Glycerol-3 Phosphate Bound Had-Like
Phosphatase From Saccharomyces Cerevisiae
Length = 355
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 20 GLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS---SRRAS 76
G R T + A+ GVL GKKP GA L++L ++++N S RA
Sbjct: 6 GKRFFQTTSKKIAFAFAIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERAR 65
Query: 77 T 77
T
Sbjct: 66 T 66
>pdb|1ZCZ|A Chain A, Crystal Structure Of
Phosphoribosylaminoimidazolecarboxamide
Formyltransferase IMP CYCLOHYDROLASE (TM1249) FROM
THERMOTOGA Maritima At 1.88 A Resolution
pdb|1ZCZ|B Chain B, Crystal Structure Of
Phosphoribosylaminoimidazolecarboxamide
Formyltransferase IMP CYCLOHYDROLASE (TM1249) FROM
THERMOTOGA Maritima At 1.88 A Resolution
Length = 464
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG 86
P+P +LE+LA G K VV S R I+K + LG
Sbjct: 415 PFP---DSLEILAQAGVKAVVAPLGSIRDEEVIEKARELG 451
>pdb|1YS9|A Chain A, Crystal Sructure Of Phosphatase Spy1043 From
Streptococcus Pyogenes
Length = 254
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/58 (20%), Positives = 28/58 (48%)
Query: 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF 87
+K +L+D G ++ GK P ++ L G ++++N++ R + + + F
Sbjct: 3 YKGYLIDLDGTIYQGKNRIPAGERFIKRLQERGIPYLLVTNNTTRTPEMVQSMLANQF 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,895,830
Number of Sequences: 62578
Number of extensions: 266041
Number of successful extensions: 765
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 36
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)