Query 025564
Match_columns 251
No_of_seqs 261 out of 1990
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 07:08:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025564.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025564hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0647 NagD Predicted sugar p 100.0 8.4E-44 1.8E-48 309.6 19.8 205 22-247 2-213 (269)
2 KOG2882 p-Nitrophenyl phosphat 100.0 6.2E-40 1.3E-44 283.7 18.8 211 19-248 13-246 (306)
3 PRK10444 UMP phosphatase; Prov 100.0 3.6E-36 7.7E-41 261.2 19.0 193 30-247 1-197 (248)
4 TIGR01457 HAD-SF-IIA-hyp2 HAD- 100.0 1.8E-35 3.8E-40 257.1 19.9 197 30-247 1-201 (249)
5 PLN02645 phosphoglycolate phos 100.0 2E-34 4.3E-39 258.1 19.3 213 17-247 17-253 (311)
6 TIGR01459 HAD-SF-IIA-hyp4 HAD- 100.0 1.4E-32 3.1E-37 237.7 23.0 215 21-247 1-219 (242)
7 TIGR01452 PGP_euk phosphoglyco 100.0 5.8E-33 1.2E-37 245.0 19.9 202 29-247 1-225 (279)
8 TIGR01460 HAD-SF-IIA Haloacid 100.0 1.4E-31 3E-36 230.9 19.3 192 33-243 1-205 (236)
9 TIGR01458 HAD-SF-IIA-hyp3 HAD- 100.0 5.4E-30 1.2E-34 223.7 20.3 192 30-247 1-202 (257)
10 TIGR01456 CECR5 HAD-superfamil 100.0 1.2E-30 2.6E-35 234.5 16.4 188 32-239 2-246 (321)
11 KOG3040 Predicted sugar phosph 100.0 7.5E-29 1.6E-33 204.0 18.4 198 28-250 5-207 (262)
12 PF13344 Hydrolase_6: Haloacid 99.9 3.8E-23 8.3E-28 155.8 6.9 99 33-139 1-100 (101)
13 KOG1618 Predicted phosphatase 99.8 7.8E-20 1.7E-24 159.2 15.8 197 31-248 36-304 (389)
14 COG0637 Predicted phosphatase/ 99.0 5.7E-10 1.2E-14 95.3 7.1 102 46-193 86-187 (221)
15 TIGR01684 viral_ppase viral ph 99.0 8.1E-10 1.8E-14 97.2 5.8 77 24-105 122-202 (301)
16 TIGR01662 HAD-SF-IIIA HAD-supe 99.0 2.7E-09 5.9E-14 83.4 8.1 58 31-88 1-73 (132)
17 TIGR01681 HAD-SF-IIIC HAD-supe 99.0 1.1E-09 2.4E-14 85.7 5.8 67 31-99 1-87 (128)
18 PRK11587 putative phosphatase; 98.9 7.5E-09 1.6E-13 87.9 8.9 51 46-100 83-133 (218)
19 PRK13288 pyrophosphatase PpaX; 98.9 6E-09 1.3E-13 88.0 7.7 53 46-101 82-134 (214)
20 PHA03398 viral phosphatase sup 98.8 7.7E-09 1.7E-13 91.1 6.3 74 29-105 127-204 (303)
21 PRK14988 GMP/IMP nucleotidase; 98.8 6.6E-09 1.4E-13 88.9 5.8 53 47-102 94-146 (224)
22 PLN02575 haloacid dehalogenase 98.8 8.9E-09 1.9E-13 94.4 6.3 54 46-102 216-269 (381)
23 TIGR01668 YqeG_hyp_ppase HAD s 98.8 2.7E-08 5.8E-13 81.6 7.7 98 23-127 18-117 (170)
24 PLN03243 haloacid dehalogenase 98.8 1.7E-08 3.8E-13 88.3 7.0 54 46-102 109-162 (260)
25 cd01427 HAD_like Haloacid deha 98.8 1.3E-08 2.9E-13 77.9 5.5 69 32-103 1-78 (139)
26 PRK10826 2-deoxyglucose-6-phos 98.7 3.4E-08 7.4E-13 83.9 8.2 53 45-100 91-143 (222)
27 TIGR01664 DNA-3'-Pase DNA 3'-p 98.7 2.9E-08 6.3E-13 81.2 7.1 69 28-99 11-102 (166)
28 TIGR01685 MDP-1 magnesium-depe 98.7 2.2E-08 4.8E-13 82.5 5.8 68 30-100 2-106 (174)
29 PLN02770 haloacid dehalogenase 98.7 2.8E-08 6E-13 86.3 6.7 54 46-102 108-161 (248)
30 TIGR01670 YrbI-phosphatas 3-de 98.7 3.1E-08 6.7E-13 80.0 6.3 100 30-139 1-113 (154)
31 TIGR01656 Histidinol-ppas hist 98.7 5.2E-08 1.1E-12 77.9 7.0 58 31-88 1-82 (147)
32 PRK06769 hypothetical protein; 98.7 4.4E-08 9.6E-13 80.6 6.6 62 29-90 3-78 (173)
33 TIGR02726 phenyl_P_delta pheny 98.7 3.2E-08 6.9E-13 81.2 5.2 105 29-141 6-121 (169)
34 PRK13226 phosphoglycolate phos 98.6 8.3E-08 1.8E-12 82.2 6.8 53 46-101 95-147 (229)
35 PRK08942 D,D-heptose 1,7-bisph 98.6 2E-07 4.4E-12 76.9 8.8 45 29-73 2-56 (181)
36 PRK13225 phosphoglycolate phos 98.6 1.1E-07 2.4E-12 83.8 7.3 52 46-100 142-193 (273)
37 TIGR01454 AHBA_synth_RP 3-amin 98.6 1E-07 2.3E-12 79.9 6.6 56 43-101 72-127 (205)
38 TIGR01672 AphA HAD superfamily 98.6 2.1E-07 4.5E-12 80.4 7.9 69 32-101 65-170 (237)
39 PRK13222 phosphoglycolate phos 98.6 2E-07 4.2E-12 79.0 7.6 52 46-100 93-144 (226)
40 COG0546 Gph Predicted phosphat 98.6 1.7E-07 3.7E-12 79.9 7.2 50 46-98 89-138 (220)
41 TIGR00213 GmhB_yaeD D,D-heptos 98.6 2.3E-07 5.1E-12 76.3 7.6 43 31-73 2-53 (176)
42 TIGR02253 CTE7 HAD superfamily 98.5 1.3E-07 2.9E-12 79.9 6.2 55 45-102 93-147 (221)
43 PLN02940 riboflavin kinase 98.5 1.8E-07 3.9E-12 86.3 7.1 54 46-102 93-147 (382)
44 TIGR02009 PGMB-YQAB-SF beta-ph 98.5 2.5E-07 5.5E-12 75.8 7.0 53 44-101 86-138 (185)
45 TIGR03351 PhnX-like phosphonat 98.5 2.1E-07 4.6E-12 78.7 6.5 54 45-101 86-141 (220)
46 PHA02530 pseT polynucleotide k 98.5 2.6E-07 5.7E-12 82.0 6.9 77 30-110 158-248 (300)
47 PRK10725 fructose-1-P/6-phosph 98.5 3.2E-07 6.9E-12 75.6 6.8 51 46-101 88-138 (188)
48 TIGR00338 serB phosphoserine p 98.5 5.4E-07 1.2E-11 76.2 7.9 66 21-90 7-127 (219)
49 PRK09484 3-deoxy-D-manno-octul 98.5 2.3E-07 4.9E-12 77.0 5.2 109 21-139 14-133 (183)
50 PRK09449 dUMP phosphatase; Pro 98.5 2.7E-07 5.8E-12 78.3 5.5 53 46-102 95-147 (224)
51 PRK13478 phosphonoacetaldehyde 98.4 3.6E-07 7.8E-12 80.0 6.2 54 46-101 101-154 (267)
52 TIGR01261 hisB_Nterm histidino 98.4 6E-07 1.3E-11 73.1 6.8 64 31-97 2-90 (161)
53 PRK06698 bifunctional 5'-methy 98.4 4.8E-07 1E-11 85.4 7.0 53 46-101 330-382 (459)
54 PRK00192 mannosyl-3-phosphogly 98.4 6.9E-07 1.5E-11 78.5 7.1 60 28-89 2-62 (273)
55 TIGR01533 lipo_e_P4 5'-nucleot 98.4 1.4E-06 3.1E-11 76.4 8.0 71 29-99 74-172 (266)
56 TIGR01686 FkbH FkbH-like domai 98.4 8.2E-07 1.8E-11 80.0 6.5 68 29-99 2-85 (320)
57 COG2179 Predicted hydrolase of 98.3 2.6E-06 5.6E-11 68.9 8.5 86 23-111 21-108 (175)
58 TIGR01689 EcbF-BcbF capsule bi 98.3 1.9E-06 4E-11 67.3 7.5 42 31-72 2-50 (126)
59 PRK01158 phosphoglycolate phos 98.3 1.2E-06 2.5E-11 74.6 7.0 59 28-88 1-60 (230)
60 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.3 1.7E-06 3.7E-11 71.8 7.7 44 45-90 79-122 (201)
61 TIGR02461 osmo_MPG_phos mannos 98.3 1.2E-06 2.7E-11 75.0 6.7 56 32-89 1-56 (225)
62 PRK11009 aphA acid phosphatase 98.3 2.4E-06 5.2E-11 73.8 8.2 67 32-99 65-170 (237)
63 PRK10530 pyridoxal phosphate ( 98.3 1.9E-06 4E-11 75.2 7.1 59 28-88 1-60 (272)
64 PRK10563 6-phosphogluconate ph 98.3 1.7E-06 3.6E-11 73.3 6.4 49 46-100 88-137 (221)
65 PRK13223 phosphoglycolate phos 98.3 2E-06 4.2E-11 75.8 7.0 52 46-100 101-152 (272)
66 PRK10513 sugar phosphate phosp 98.3 2.3E-06 5E-11 74.7 7.3 59 28-88 1-60 (270)
67 smart00577 CPDc catalytic doma 98.2 2.5E-06 5.4E-11 68.3 6.2 69 31-102 3-98 (148)
68 TIGR01487 SPP-like sucrose-pho 98.2 2.8E-06 6.2E-11 71.8 6.5 57 30-88 1-58 (215)
69 PRK05446 imidazole glycerol-ph 98.2 4.4E-06 9.5E-11 76.2 8.1 64 30-96 2-90 (354)
70 PRK03669 mannosyl-3-phosphogly 98.2 3.5E-06 7.7E-11 73.9 7.0 59 28-88 5-64 (271)
71 PRK10976 putative hydrolase; P 98.2 4.7E-06 1E-10 72.6 7.0 57 30-88 2-59 (266)
72 TIGR01993 Pyr-5-nucltdase pyri 98.2 2.4E-06 5.2E-11 70.4 4.9 52 45-102 83-134 (184)
73 PRK15126 thiamin pyrimidine py 98.2 4.7E-06 1E-10 73.0 6.9 57 30-88 2-59 (272)
74 PLN02954 phosphoserine phospha 98.2 4.9E-06 1.1E-10 70.5 6.8 41 46-88 84-124 (224)
75 COG1778 Low specificity phosph 98.2 2.1E-06 4.6E-11 68.7 4.1 109 23-141 3-122 (170)
76 PLN02919 haloacid dehalogenase 98.2 4.6E-06 1E-10 86.0 7.5 53 47-102 162-215 (1057)
77 COG0561 Cof Predicted hydrolas 98.1 6.7E-06 1.4E-10 71.6 7.0 60 28-89 1-61 (264)
78 PRK12702 mannosyl-3-phosphogly 98.1 7.1E-06 1.5E-10 72.6 6.9 58 30-89 1-59 (302)
79 TIGR01486 HAD-SF-IIB-MPGP mann 98.1 6.5E-06 1.4E-10 71.6 6.5 54 33-88 2-56 (256)
80 smart00775 LNS2 LNS2 domain. T 98.1 8.5E-06 1.8E-10 66.1 6.7 42 32-73 1-54 (157)
81 TIGR02463 MPGP_rel mannosyl-3- 98.1 7.6E-06 1.6E-10 69.3 6.4 54 33-88 2-56 (221)
82 TIGR01549 HAD-SF-IA-v1 haloaci 98.1 4.3E-06 9.4E-11 66.6 4.5 53 44-100 62-114 (154)
83 TIGR01663 PNK-3'Pase polynucle 98.1 1.1E-05 2.4E-10 77.1 8.0 72 23-99 163-257 (526)
84 PRK10748 flavin mononucleotide 98.1 5.8E-06 1.3E-10 71.2 5.4 46 48-102 115-160 (238)
85 TIGR01489 DKMTPPase-SF 2,3-dik 98.0 1E-05 2.3E-10 66.2 6.2 54 45-101 71-124 (188)
86 PTZ00174 phosphomannomutase; P 98.0 8.6E-06 1.9E-10 70.6 5.7 55 27-83 2-57 (247)
87 TIGR00099 Cof-subfamily Cof su 98.0 1.5E-05 3.1E-10 69.2 6.7 55 32-88 1-56 (256)
88 COG1011 Predicted hydrolase (H 98.0 1.2E-05 2.7E-10 67.9 5.6 54 45-102 98-151 (229)
89 TIGR02252 DREG-2 REG-2-like, H 98.0 5.8E-06 1.3E-10 69.0 3.5 69 172-244 108-178 (203)
90 TIGR01482 SPP-subfamily Sucros 97.9 2E-05 4.3E-10 66.7 5.6 54 33-88 1-55 (225)
91 PRK11133 serB phosphoserine ph 97.9 4.9E-05 1.1E-09 68.7 8.2 42 46-89 181-222 (322)
92 PHA02597 30.2 hypothetical pro 97.9 3E-05 6.5E-10 64.5 6.1 53 45-100 73-128 (197)
93 PLN02887 hydrolase family prot 97.9 4.4E-05 9.5E-10 74.0 7.9 65 20-88 300-365 (580)
94 PF12689 Acid_PPase: Acid Phos 97.8 5.6E-05 1.2E-09 62.0 6.4 58 30-88 3-86 (169)
95 PF08282 Hydrolase_3: haloacid 97.8 4.9E-05 1.1E-09 64.4 6.3 54 33-88 1-55 (254)
96 PRK13582 thrH phosphoserine ph 97.8 4.9E-05 1.1E-09 63.4 6.0 41 47-90 69-109 (205)
97 PF13419 HAD_2: Haloacid dehal 97.7 3.7E-05 8.1E-10 61.4 4.4 57 43-102 74-130 (176)
98 TIGR02137 HSK-PSP phosphoserin 97.7 0.00013 2.9E-09 61.5 7.6 42 46-90 68-109 (203)
99 TIGR01422 phosphonatase phosph 97.7 9.8E-06 2.1E-10 70.2 0.6 67 173-242 103-172 (253)
100 TIGR02247 HAD-1A3-hyp Epoxide 97.7 3.2E-05 6.9E-10 65.0 3.6 73 171-244 96-170 (211)
101 PF09419 PGP_phosphatase: Mito 97.7 0.00012 2.5E-09 60.0 6.7 62 28-89 39-109 (168)
102 TIGR01449 PGP_bact 2-phosphogl 97.7 8.1E-05 1.8E-09 62.3 6.0 55 44-101 83-137 (213)
103 TIGR01675 plant-AP plant acid 97.7 0.00013 2.8E-09 62.7 7.1 62 29-90 76-165 (229)
104 TIGR01428 HAD_type_II 2-haloal 97.7 7.7E-05 1.7E-09 62.0 5.6 56 43-101 89-144 (198)
105 PF03767 Acid_phosphat_B: HAD 97.6 5E-05 1.1E-09 65.3 3.7 62 29-90 71-160 (229)
106 TIGR01680 Veg_Stor_Prot vegeta 97.6 0.00019 4E-09 62.9 7.1 62 29-90 100-190 (275)
107 PF08645 PNK3P: Polynucleotide 97.6 0.00013 2.7E-09 59.3 5.6 42 31-72 1-55 (159)
108 PRK09552 mtnX 2-hydroxy-3-keto 97.5 0.0002 4.4E-09 60.7 6.2 41 45-88 73-113 (219)
109 PRK14502 bifunctional mannosyl 97.5 0.00021 4.6E-09 69.8 6.9 59 28-88 414-473 (694)
110 TIGR01484 HAD-SF-IIB HAD-super 97.5 0.00023 5E-09 59.4 6.3 51 32-84 1-53 (204)
111 TIGR01509 HAD-SF-IA-v3 haloaci 97.5 0.00026 5.6E-09 57.5 6.2 52 45-100 84-135 (183)
112 TIGR01990 bPGM beta-phosphoglu 97.5 0.00019 4.2E-09 58.6 5.4 53 44-101 85-137 (185)
113 KOG3085 Predicted hydrolase (H 97.4 0.00035 7.5E-09 60.2 6.5 73 173-250 117-192 (237)
114 COG0241 HisB Histidinol phosph 97.4 0.00032 7E-09 58.0 5.6 43 30-72 5-57 (181)
115 TIGR02471 sucr_syn_bact_C sucr 97.4 0.00021 4.5E-09 61.3 4.5 54 32-88 1-54 (236)
116 PLN02423 phosphomannomutase 97.4 0.00037 8.1E-09 60.4 6.0 43 29-72 5-49 (245)
117 PRK10187 trehalose-6-phosphate 97.4 0.00036 7.7E-09 61.3 5.8 54 31-86 15-75 (266)
118 TIGR01449 PGP_bact 2-phosphogl 97.3 3.6E-05 7.8E-10 64.5 -0.7 72 173-247 89-162 (213)
119 TIGR01485 SPP_plant-cyano sucr 97.3 0.00035 7.6E-09 60.5 5.4 56 32-89 3-62 (249)
120 PF08235 LNS2: LNS2 (Lipin/Ned 97.3 0.00037 7.9E-09 56.4 5.0 40 33-72 2-53 (157)
121 PLN02779 haloacid dehalogenase 97.3 9E-05 2E-09 65.8 1.5 71 172-243 147-219 (286)
122 TIGR01422 phosphonatase phosph 97.3 0.00034 7.3E-09 60.6 4.9 57 43-101 96-152 (253)
123 TIGR02252 DREG-2 REG-2-like, H 97.3 0.00038 8.3E-09 57.9 4.8 52 46-101 105-156 (203)
124 PRK08238 hypothetical protein; 97.2 0.0006 1.3E-08 64.8 6.4 49 47-101 73-121 (479)
125 COG2503 Predicted secreted aci 97.2 0.00094 2E-08 57.3 6.8 63 29-91 78-169 (274)
126 TIGR02247 HAD-1A3-hyp Epoxide 97.2 0.0004 8.7E-09 58.2 4.5 56 45-101 93-148 (211)
127 TIGR01488 HAD-SF-IB Haloacid D 97.2 0.00069 1.5E-08 54.9 5.8 44 44-89 71-114 (177)
128 PLN02811 hydrolase 97.2 0.00073 1.6E-08 57.3 5.9 53 44-99 76-129 (220)
129 TIGR02250 FCP1_euk FCP1-like p 97.2 0.00067 1.4E-08 54.9 5.2 52 47-101 59-111 (156)
130 COG3769 Predicted hydrolase (H 97.1 0.0012 2.7E-08 55.9 6.0 60 29-90 6-65 (274)
131 TIGR02251 HIF-SF_euk Dullard-l 97.0 0.0017 3.7E-08 52.8 6.1 66 31-99 2-92 (162)
132 COG0560 SerB Phosphoserine pho 97.0 0.0017 3.8E-08 55.1 6.4 43 45-90 76-119 (212)
133 TIGR01548 HAD-SF-IA-hyp1 haloa 97.0 0.00087 1.9E-08 55.7 4.5 54 46-102 106-159 (197)
134 KOG2914 Predicted haloacid-hal 97.0 0.0012 2.5E-08 56.6 5.2 50 45-97 91-141 (222)
135 COG4996 Predicted phosphatase 97.0 0.0014 3E-08 51.2 4.9 63 32-97 2-89 (164)
136 TIGR03333 salvage_mtnX 2-hydro 96.8 0.0027 6E-08 53.6 5.6 42 44-87 68-109 (214)
137 TIGR02254 YjjG/YfnB HAD superf 96.7 0.0023 4.9E-08 53.8 4.8 53 45-101 96-148 (224)
138 PRK09456 ?-D-glucose-1-phospha 96.7 0.0018 3.8E-08 54.0 3.8 54 46-102 84-138 (199)
139 PF03031 NIF: NLI interacting 96.7 0.0016 3.4E-08 52.4 3.3 42 31-73 1-62 (159)
140 PF05152 DUF705: Protein of un 96.6 0.0048 1E-07 54.2 6.1 76 29-107 121-200 (297)
141 TIGR01525 ATPase-IB_hvy heavy 96.4 0.0055 1.2E-07 59.4 5.4 101 29-139 363-468 (556)
142 TIGR01691 enolase-ppase 2,3-di 96.3 0.0076 1.6E-07 51.5 5.4 54 21-74 62-123 (220)
143 PLN02779 haloacid dehalogenase 96.3 0.0094 2E-07 52.9 6.2 38 46-85 144-181 (286)
144 TIGR01512 ATPase-IB2_Cd heavy 96.2 0.0046 1E-07 59.6 4.2 98 31-138 343-445 (536)
145 TIGR02244 HAD-IG-Ncltidse HAD 96.2 0.0059 1.3E-07 55.6 4.5 61 37-100 167-243 (343)
146 TIGR02245 HAD_IIID1 HAD-superf 96.2 0.011 2.3E-07 49.7 5.6 58 29-89 20-85 (195)
147 PF06888 Put_Phosphatase: Puta 96.1 0.015 3.2E-07 50.2 6.3 53 44-99 69-123 (234)
148 PRK14501 putative bifunctional 96.1 0.011 2.3E-07 59.2 6.1 56 29-86 491-553 (726)
149 TIGR01511 ATPase-IB1_Cu copper 96.1 0.015 3.3E-07 56.4 6.9 100 29-139 384-487 (562)
150 PF00702 Hydrolase: haloacid d 96.1 0.0026 5.7E-08 52.8 1.3 49 39-89 120-168 (215)
151 PLN03017 trehalose-phosphatase 96.0 0.0091 2E-07 54.7 4.8 59 14-73 93-159 (366)
152 PF06941 NT5C: 5' nucleotidase 96.0 0.01 2.2E-07 49.2 4.7 33 41-73 68-100 (191)
153 PLN02205 alpha,alpha-trehalose 95.8 0.018 3.8E-07 58.6 6.4 75 7-83 572-652 (854)
154 PLN02151 trehalose-phosphatase 95.8 0.016 3.4E-07 53.0 5.4 58 15-73 81-146 (354)
155 COG4087 Soluble P-type ATPase 95.8 0.038 8.2E-07 43.3 6.7 89 31-129 15-104 (152)
156 PLN02382 probable sucrose-phos 95.7 0.022 4.7E-07 53.3 5.9 57 32-90 11-71 (413)
157 PF13242 Hydrolase_like: HAD-h 95.6 0.0096 2.1E-07 41.7 2.6 25 223-247 1-27 (75)
158 TIGR01544 HAD-SF-IE haloacid d 95.5 0.029 6.2E-07 49.6 5.7 49 44-95 119-167 (277)
159 PRK09456 ?-D-glucose-1-phospha 95.5 0.016 3.4E-07 48.3 3.8 76 172-250 87-165 (199)
160 PTZ00445 p36-lilke protein; Pr 95.2 0.035 7.7E-07 47.0 5.1 78 20-108 33-126 (219)
161 PF05116 S6PP: Sucrose-6F-phos 95.0 0.018 3.8E-07 50.0 2.7 65 31-99 3-68 (247)
162 PLN02580 trehalose-phosphatase 95.0 0.05 1.1E-06 50.3 5.8 65 15-82 102-174 (384)
163 TIGR00685 T6PP trehalose-phosp 94.8 0.06 1.3E-06 46.5 5.4 44 29-72 2-52 (244)
164 KOG1615 Phosphoserine phosphat 94.7 0.11 2.3E-06 43.6 6.4 66 20-89 8-129 (227)
165 PRK11590 hypothetical protein; 94.4 0.08 1.7E-06 44.6 5.3 50 46-99 95-145 (211)
166 KOG2914 Predicted haloacid-hal 94.4 0.059 1.3E-06 46.1 4.5 74 175-250 98-177 (222)
167 TIGR01668 YqeG_hyp_ppase HAD s 94.3 0.42 9.1E-06 38.9 9.2 65 171-247 45-114 (170)
168 COG0637 Predicted phosphatase/ 94.3 0.024 5.1E-07 48.4 1.7 68 174-244 91-160 (221)
169 PRK06769 hypothetical protein; 94.2 0.16 3.5E-06 41.4 6.5 69 171-243 30-110 (173)
170 TIGR01428 HAD_type_II 2-haloal 94.1 0.034 7.4E-07 45.9 2.4 74 172-248 95-170 (198)
171 TIGR01493 HAD-SF-IA-v2 Haloaci 94.1 0.016 3.4E-07 46.9 0.3 50 42-101 86-135 (175)
172 PRK10671 copA copper exporting 93.8 0.11 2.3E-06 53.0 5.6 100 30-139 630-733 (834)
173 PLN03243 haloacid dehalogenase 93.6 0.031 6.7E-07 48.9 1.2 70 172-244 112-183 (260)
174 PLN02770 haloacid dehalogenase 93.5 0.046 1E-06 47.2 2.2 68 173-243 112-181 (248)
175 TIGR01490 HAD-SF-IB-hyp1 HAD-s 93.5 0.1 2.2E-06 43.1 4.2 43 46-90 87-129 (202)
176 KOG3109 Haloacid dehalogenase- 93.3 0.11 2.3E-06 44.3 3.9 42 54-100 108-149 (244)
177 TIGR01509 HAD-SF-IA-v3 haloaci 93.2 0.062 1.3E-06 43.3 2.3 74 172-249 88-163 (183)
178 TIGR01522 ATPase-IIA2_Ca golgi 93.1 0.28 6.2E-06 50.2 7.5 60 38-100 520-579 (884)
179 PRK10826 2-deoxyglucose-6-phos 93.0 0.065 1.4E-06 45.2 2.2 69 172-243 95-165 (222)
180 PF06437 ISN1: IMP-specific 5' 92.9 0.3 6.6E-06 44.8 6.4 55 29-83 146-204 (408)
181 TIGR02253 CTE7 HAD superfamily 92.8 0.078 1.7E-06 44.4 2.5 70 172-244 97-168 (221)
182 PLN02811 hydrolase 92.8 0.13 2.8E-06 43.4 3.8 71 172-244 81-158 (220)
183 PRK14988 GMP/IMP nucleotidase; 92.8 0.051 1.1E-06 46.3 1.3 69 173-244 97-167 (224)
184 PRK11033 zntA zinc/cadmium/mer 92.6 0.22 4.7E-06 50.1 5.7 96 30-137 548-647 (741)
185 PLN02575 haloacid dehalogenase 92.5 0.088 1.9E-06 48.7 2.5 72 173-247 220-293 (381)
186 TIGR01545 YfhB_g-proteo haloac 92.2 0.28 6.1E-06 41.4 5.2 28 46-73 94-122 (210)
187 COG1877 OtsB Trehalose-6-phosp 92.0 0.42 9.1E-06 42.1 6.1 53 29-83 17-76 (266)
188 TIGR03351 PhnX-like phosphonat 91.7 0.12 2.6E-06 43.3 2.3 66 174-242 92-161 (220)
189 COG2217 ZntA Cation transport 91.6 0.29 6.3E-06 48.9 5.1 113 32-154 519-641 (713)
190 PLN03063 alpha,alpha-trehalose 91.4 0.44 9.6E-06 48.3 6.3 53 30-84 507-569 (797)
191 KOG2116 Protein involved in pl 91.4 0.48 1E-05 46.3 6.1 72 31-103 531-619 (738)
192 TIGR01656 Histidinol-ppas hist 91.0 0.49 1.1E-05 37.4 5.0 75 171-245 29-120 (147)
193 PRK10748 flavin mononucleotide 90.9 0.34 7.3E-06 41.5 4.4 68 172-247 116-186 (238)
194 COG1011 Predicted hydrolase (H 90.9 0.27 5.8E-06 41.2 3.7 72 173-248 103-176 (229)
195 KOG3085 Predicted hydrolase (H 90.9 0.28 6.1E-06 42.4 3.7 66 32-103 101-166 (237)
196 PRK11590 hypothetical protein; 90.7 0.24 5.2E-06 41.6 3.2 31 29-63 5-36 (211)
197 PLN03064 alpha,alpha-trehalose 90.7 0.58 1.3E-05 48.1 6.3 55 30-86 591-661 (934)
198 TIGR01497 kdpB K+-transporting 90.6 0.45 9.7E-06 47.3 5.4 99 30-138 426-528 (675)
199 TIGR01691 enolase-ppase 2,3-di 90.6 0.2 4.3E-06 42.8 2.6 78 171-249 97-175 (220)
200 TIGR01549 HAD-SF-IA-v1 haloaci 90.5 0.27 5.9E-06 38.7 3.2 65 174-243 69-135 (154)
201 COG4850 Uncharacterized conser 90.3 0.61 1.3E-05 42.0 5.4 66 22-89 154-241 (373)
202 TIGR01261 hisB_Nterm histidino 90.1 0.81 1.8E-05 37.0 5.7 76 172-247 32-126 (161)
203 TIGR01454 AHBA_synth_RP 3-amin 90.1 0.16 3.5E-06 42.2 1.6 69 173-244 79-149 (205)
204 PF00702 Hydrolase: haloacid d 90.1 0.17 3.8E-06 41.7 1.8 62 171-243 129-195 (215)
205 TIGR01681 HAD-SF-IIIC HAD-supe 89.9 0.84 1.8E-05 35.3 5.4 76 171-250 31-115 (128)
206 TIGR00213 GmhB_yaeD D,D-heptos 89.8 0.51 1.1E-05 38.4 4.3 22 224-245 104-125 (176)
207 TIGR01664 DNA-3'-Pase DNA 3'-p 89.6 1.2 2.5E-05 36.2 6.2 73 171-247 44-133 (166)
208 PF06189 5-nucleotidase: 5'-nu 89.6 0.76 1.6E-05 40.2 5.3 77 32-110 123-233 (264)
209 PRK05301 pyrroloquinoline quin 89.5 1.2 2.7E-05 40.8 7.1 49 41-89 67-117 (378)
210 COG3882 FkbH Predicted enzyme 89.5 0.64 1.4E-05 44.0 5.1 44 29-72 221-281 (574)
211 PF02358 Trehalose_PPase: Treh 89.1 0.3 6.6E-06 41.7 2.6 39 34-72 1-46 (235)
212 KOG0207 Cation transport ATPas 89.1 1.9 4.1E-05 43.8 8.3 117 28-154 701-827 (951)
213 COG0731 Fe-S oxidoreductases [ 88.8 1.2 2.5E-05 39.9 6.0 63 29-104 79-142 (296)
214 PRK09449 dUMP phosphatase; Pro 88.5 0.37 8E-06 40.5 2.6 67 172-242 98-166 (224)
215 PRK14010 potassium-transportin 88.3 0.82 1.8E-05 45.5 5.3 81 37-127 432-512 (673)
216 COG5083 SMP2 Uncharacterized p 88.1 1.2 2.6E-05 41.7 5.8 70 29-99 374-459 (580)
217 PRK13226 phosphoglycolate phos 88.1 0.26 5.7E-06 41.9 1.5 69 173-244 99-169 (229)
218 TIGR02886 spore_II_AA anti-sig 88.0 2.4 5.3E-05 31.1 6.6 67 20-90 29-95 (106)
219 PRK01122 potassium-transportin 87.9 0.93 2E-05 45.1 5.4 107 37-153 436-548 (679)
220 TIGR01662 HAD-SF-IIIA HAD-supe 87.7 1.8 3.9E-05 33.1 6.0 70 171-244 27-104 (132)
221 TIGR01493 HAD-SF-IA-v2 Haloaci 87.6 0.18 4E-06 40.5 0.3 57 188-247 103-160 (175)
222 TIGR01990 bPGM beta-phosphoglu 87.4 0.48 1E-05 38.3 2.6 71 172-247 90-164 (185)
223 PF13419 HAD_2: Haloacid dehal 87.4 0.074 1.6E-06 42.0 -2.2 74 173-249 81-156 (176)
224 KOG4549 Magnesium-dependent ph 87.0 1.8 4E-05 33.7 5.3 42 47-89 45-86 (144)
225 PRK13288 pyrophosphatase PpaX; 86.8 0.27 5.8E-06 41.1 0.8 68 173-243 86-155 (214)
226 COG4359 Uncharacterized conser 86.3 2.4 5.3E-05 35.3 6.1 40 45-86 72-111 (220)
227 TIGR02009 PGMB-YQAB-SF beta-ph 86.3 0.27 5.8E-06 39.8 0.6 67 173-244 92-160 (185)
228 PF04312 DUF460: Protein of un 86.2 2 4.3E-05 33.9 5.3 44 32-75 45-89 (138)
229 PRK11587 putative phosphatase; 86.2 0.26 5.7E-06 41.4 0.4 73 172-248 86-160 (218)
230 PLN02940 riboflavin kinase 86.2 0.47 1E-05 43.9 2.2 68 173-243 97-167 (382)
231 PF09587 PGA_cap: Bacterial ca 86.0 6.8 0.00015 33.8 9.2 70 17-88 26-107 (250)
232 TIGR01686 FkbH FkbH-like domai 85.6 2.4 5.2E-05 38.1 6.4 76 171-250 33-110 (320)
233 PF12710 HAD: haloacid dehalog 85.1 1.2 2.6E-05 36.0 3.9 39 49-89 92-130 (192)
234 PF01740 STAS: STAS domain; I 84.3 1.2 2.7E-05 33.3 3.4 57 30-90 48-104 (117)
235 KOG3189 Phosphomannomutase [Li 84.1 2 4.2E-05 36.3 4.6 40 31-71 12-52 (252)
236 PRK13223 phosphoglycolate phos 84.1 0.51 1.1E-05 41.4 1.3 75 172-249 104-180 (272)
237 PRK13478 phosphonoacetaldehyde 83.9 0.59 1.3E-05 40.7 1.6 66 174-242 106-174 (267)
238 TIGR02109 PQQ_syn_pqqE coenzym 83.8 1.2 2.6E-05 40.5 3.6 49 40-88 57-107 (358)
239 cd07041 STAS_RsbR_RsbS_like Su 83.6 3.9 8.5E-05 30.2 5.8 57 29-89 40-96 (109)
240 TIGR02254 YjjG/YfnB HAD superf 82.9 0.97 2.1E-05 37.6 2.5 73 173-249 101-176 (224)
241 COG1366 SpoIIAA Anti-anti-sigm 82.6 4.8 0.0001 30.4 6.1 68 19-90 33-100 (117)
242 PRK10725 fructose-1-P/6-phosph 82.6 1.2 2.6E-05 36.1 2.9 34 210-243 125-159 (188)
243 cd07043 STAS_anti-anti-sigma_f 82.6 4.1 8.9E-05 29.0 5.5 65 21-90 30-94 (99)
244 TIGR01548 HAD-SF-IA-hyp1 haloa 82.4 1.1 2.3E-05 37.0 2.5 66 175-244 112-179 (197)
245 KOG2134 Polynucleotide kinase 82.3 1.4 3.1E-05 40.6 3.4 81 29-109 74-182 (422)
246 KOG2961 Predicted hydrolase (H 82.3 3.3 7.1E-05 33.5 5.0 68 23-90 36-113 (190)
247 TIGR03470 HpnH hopanoid biosyn 81.8 6.4 0.00014 35.4 7.5 44 43-87 79-124 (318)
248 TIGR01993 Pyr-5-nucltdase pyri 81.7 1 2.3E-05 36.5 2.2 72 172-248 87-163 (184)
249 TIGR02495 NrdG2 anaerobic ribo 81.5 3.4 7.4E-05 33.8 5.2 49 37-87 63-113 (191)
250 TIGR00377 ant_ant_sig anti-ant 80.2 4.9 0.00011 29.4 5.3 68 19-90 32-99 (108)
251 PRK05446 imidazole glycerol-ph 80.1 5.9 0.00013 36.4 6.7 77 171-247 32-127 (354)
252 TIGR01517 ATPase-IIB_Ca plasma 80.0 3.5 7.6E-05 42.7 5.8 59 39-100 572-630 (941)
253 PTZ00445 p36-lilke protein; Pr 79.8 6.5 0.00014 33.5 6.3 79 172-250 78-185 (219)
254 PRK13222 phosphoglycolate phos 79.8 0.79 1.7E-05 38.3 0.9 73 173-248 97-171 (226)
255 COG0602 NrdG Organic radical a 79.7 1.7 3.6E-05 36.9 2.8 57 15-73 52-110 (212)
256 PF05761 5_nucleotid: 5' nucle 79.5 1.7 3.6E-05 41.2 3.0 50 48-100 185-243 (448)
257 PLN02919 haloacid dehalogenase 79.3 1.3 2.9E-05 46.3 2.5 72 172-245 164-237 (1057)
258 cd06844 STAS Sulphate Transpor 79.3 4.8 0.0001 29.3 4.9 57 29-89 38-94 (100)
259 COG0546 Gph Predicted phosphat 78.4 1.2 2.6E-05 37.6 1.6 72 173-247 93-168 (220)
260 PRK10517 magnesium-transportin 76.7 3.4 7.4E-05 42.6 4.5 57 39-100 543-599 (902)
261 TIGR01545 YfhB_g-proteo haloac 76.7 1.8 4E-05 36.5 2.2 19 30-48 5-23 (210)
262 PRK13361 molybdenum cofactor b 76.6 5.9 0.00013 35.7 5.6 49 39-88 64-116 (329)
263 TIGR01647 ATPase-IIIA_H plasma 76.0 3.8 8.3E-05 41.4 4.6 50 38-89 434-483 (755)
264 TIGR01490 HAD-SF-IB-hyp1 HAD-s 75.6 1 2.2E-05 37.1 0.3 14 33-46 2-15 (202)
265 TIGR01116 ATPase-IIA1_Ca sarco 74.9 4.8 0.0001 41.6 5.1 49 39-89 530-578 (917)
266 cd06591 GH31_xylosidase_XylS X 74.5 9.6 0.00021 34.2 6.4 59 29-87 39-105 (319)
267 PF12710 HAD: haloacid dehalog 74.5 1.8 3.9E-05 35.0 1.5 13 33-45 1-13 (192)
268 PRK10076 pyruvate formate lyas 73.4 3.1 6.6E-05 35.3 2.7 47 36-82 38-87 (213)
269 PRK15122 magnesium-transportin 73.3 5.8 0.00013 40.9 5.2 57 39-100 543-599 (903)
270 COG3700 AphA Acid phosphatase 72.9 14 0.00031 30.7 6.4 40 51-90 119-160 (237)
271 COG2604 Uncharacterized protei 72.4 26 0.00057 34.2 9.0 100 131-251 259-363 (594)
272 PRK13762 tRNA-modifying enzyme 71.1 13 0.00028 33.6 6.4 27 47-73 143-169 (322)
273 KOG3120 Predicted haloacid deh 70.7 4 8.6E-05 35.0 2.8 53 43-98 81-134 (256)
274 TIGR02726 phenyl_P_delta pheny 68.8 16 0.00035 29.7 6.0 56 176-243 41-98 (169)
275 TIGR01523 ATPase-IID_K-Na pota 68.5 11 0.00023 39.8 5.9 48 39-88 639-686 (1053)
276 TIGR01524 ATPase-IIIB_Mg magne 68.4 8.1 0.00018 39.7 5.0 56 39-99 508-563 (867)
277 PLN02177 glycerol-3-phosphate 68.0 4.1 9E-05 39.1 2.6 20 30-49 22-41 (497)
278 cd06598 GH31_transferase_CtsZ 67.9 18 0.00038 32.5 6.6 58 30-87 40-109 (317)
279 KOG0385 Chromatin remodeling c 67.8 35 0.00075 34.7 8.8 103 52-180 477-584 (971)
280 cd06592 GH31_glucosidase_KIAA1 67.1 19 0.0004 32.1 6.5 43 30-72 46-93 (303)
281 cd06595 GH31_xylosidase_XylS-l 67.0 11 0.00024 33.4 5.0 43 30-72 41-97 (292)
282 PRK08942 D,D-heptose 1,7-bisph 67.0 5.2 0.00011 32.5 2.7 22 223-244 100-121 (181)
283 TIGR03278 methan_mark_10 putat 66.5 15 0.00033 34.4 5.9 70 36-106 73-147 (404)
284 TIGR01106 ATPase-IIC_X-K sodiu 66.1 9.3 0.0002 39.9 4.9 48 39-88 561-608 (997)
285 COG2216 KdpB High-affinity K+ 66.0 17 0.00038 35.1 6.2 52 37-90 438-489 (681)
286 PRK05428 HPr kinase/phosphoryl 65.7 49 0.0011 29.8 8.8 41 50-90 70-110 (308)
287 TIGR02826 RNR_activ_nrdG3 anae 64.6 9.5 0.00021 30.4 3.7 51 17-72 47-98 (147)
288 TIGR01452 PGP_euk phosphoglyco 64.2 10 0.00022 33.1 4.3 39 29-73 131-169 (279)
289 COG4229 Predicted enolase-phos 64.2 7.1 0.00015 32.6 2.9 54 21-74 70-131 (229)
290 KOG0202 Ca2+ transporting ATPa 63.3 14 0.0003 37.7 5.2 50 39-90 577-626 (972)
291 KOG3109 Haloacid dehalogenase- 62.9 9.7 0.00021 32.6 3.6 74 173-250 104-185 (244)
292 cd07042 STAS_SulP_like_sulfate 62.9 13 0.00027 26.8 3.9 65 19-89 29-96 (107)
293 COG1180 PflA Pyruvate-formate 62.8 10 0.00022 33.2 3.9 52 22-75 71-125 (260)
294 PHA02530 pseT polynucleotide k 62.7 13 0.00029 32.5 4.7 70 171-242 189-267 (300)
295 PF00532 Peripla_BP_1: Peripla 62.6 34 0.00073 29.8 7.2 27 169-195 162-190 (279)
296 PRK10563 6-phosphogluconate ph 62.0 4.8 0.0001 33.6 1.7 23 222-244 138-160 (221)
297 PRK11660 putative transporter; 61.9 20 0.00044 34.9 6.2 71 29-104 490-561 (568)
298 PRK06698 bifunctional 5'-methy 60.8 7.6 0.00016 36.7 2.9 71 173-247 334-406 (459)
299 TIGR01663 PNK-3'Pase polynucle 60.6 19 0.00042 34.9 5.6 76 168-247 196-290 (526)
300 TIGR01494 ATPase_P-type ATPase 60.4 10 0.00023 36.1 3.8 45 29-73 326-374 (499)
301 TIGR01657 P-ATPase-V P-type AT 59.7 15 0.00033 38.6 5.1 50 39-90 649-698 (1054)
302 COG0474 MgtA Cation transport 58.9 23 0.00049 36.8 6.2 59 39-100 540-600 (917)
303 TIGR03365 Bsubt_queE 7-cyano-7 58.6 11 0.00023 32.5 3.3 38 37-74 73-112 (238)
304 TIGR02494 PFLE_PFLC glycyl-rad 57.3 17 0.00037 31.9 4.5 48 36-83 125-175 (295)
305 PF07075 DUF1343: Protein of u 57.2 12 0.00025 34.6 3.4 49 20-70 71-119 (365)
306 TIGR02468 sucrsPsyn_pln sucros 55.3 31 0.00067 36.3 6.4 65 35-105 777-845 (1050)
307 TIGR01459 HAD-SF-IIA-hyp4 HAD- 54.6 13 0.00029 31.6 3.2 26 47-73 139-164 (242)
308 TIGR00815 sulP high affinity s 54.6 20 0.00044 34.8 4.8 57 30-90 494-550 (563)
309 KOG2470 Similar to IMP-GMP spe 54.2 13 0.00028 34.1 3.1 25 49-73 243-267 (510)
310 COG0826 Collagenase and relate 51.3 65 0.0014 29.5 7.2 84 147-238 26-110 (347)
311 cd06603 GH31_GANC_GANAB_alpha 50.8 42 0.00091 30.4 6.0 59 30-88 40-106 (339)
312 PRK11145 pflA pyruvate formate 49.6 19 0.00041 30.7 3.4 37 37-73 71-110 (246)
313 KOG0384 Chromodomain-helicase 49.2 56 0.0012 34.9 7.0 89 52-156 689-779 (1373)
314 cd01427 HAD_like Haloacid deha 49.2 19 0.00042 26.3 3.0 31 218-248 88-118 (139)
315 PF08645 PNK3P: Polynucleotide 48.1 16 0.00035 29.4 2.5 82 167-248 27-125 (159)
316 PF11019 DUF2608: Protein of u 48.0 33 0.00072 29.8 4.7 42 49-90 84-126 (252)
317 COG4502 5'(3')-deoxyribonucleo 47.4 51 0.0011 26.4 5.1 49 21-72 43-93 (180)
318 PRK10658 putative alpha-glucos 47.4 50 0.0011 33.0 6.3 59 30-88 299-365 (665)
319 cd05014 SIS_Kpsf KpsF-like pro 47.1 29 0.00062 26.1 3.7 28 47-74 59-86 (128)
320 TIGR01652 ATPase-Plipid phosph 46.8 22 0.00048 37.4 3.9 48 39-88 624-671 (1057)
321 cd05008 SIS_GlmS_GlmD_1 SIS (S 46.6 28 0.00062 26.0 3.6 28 47-74 58-85 (126)
322 KOG0391 SNF2 family DNA-depend 45.2 66 0.0014 34.6 6.7 90 52-156 1266-1355(1958)
323 TIGR01670 YrbI-phosphatas 3-de 44.9 87 0.0019 24.6 6.4 55 177-243 36-92 (154)
324 TIGR01458 HAD-SF-IIA-hyp3 HAD- 44.5 37 0.00081 29.3 4.4 40 30-73 108-147 (257)
325 TIGR03191 benz_CoA_bzdO benzoy 44.3 29 0.00064 32.7 4.0 62 4-72 336-402 (430)
326 cd01335 Radical_SAM Radical SA 44.3 62 0.0014 25.3 5.5 41 49-89 59-101 (204)
327 PF02593 dTMP_synthase: Thymid 44.3 1E+02 0.0022 26.3 6.9 88 14-110 35-131 (217)
328 cd06601 GH31_lyase_GLase GLase 44.1 49 0.0011 30.0 5.3 44 29-72 39-87 (332)
329 KOG3349 Predicted glycosyltran 44.0 26 0.00056 28.4 3.0 42 48-90 87-131 (170)
330 TIGR02668 moaA_archaeal probab 43.4 41 0.00089 29.6 4.6 50 38-88 58-110 (302)
331 PF14597 Lactamase_B_5: Metall 43.3 26 0.00057 29.2 3.0 47 35-81 21-76 (199)
332 cd06599 GH31_glycosidase_Aec37 42.5 95 0.0021 27.8 6.9 60 29-88 44-113 (317)
333 PLN03142 Probable chromatin-re 42.4 1.4E+02 0.0031 31.6 8.8 106 52-185 477-585 (1033)
334 PRK01045 ispH 4-hydroxy-3-meth 42.2 79 0.0017 28.3 6.2 11 218-228 113-123 (298)
335 cd06600 GH31_MGAM-like This fa 42.2 45 0.00098 29.9 4.7 44 29-72 39-87 (317)
336 TIGR00679 hpr-ser Hpr(Ser) kin 42.1 1.9E+02 0.0042 26.0 8.6 41 50-90 70-110 (304)
337 cd00153 RalGDS_RA Ubiquitin do 41.7 36 0.00078 24.6 3.1 29 62-90 17-45 (87)
338 PRK13125 trpA tryptophan synth 41.1 37 0.00081 29.2 3.9 62 18-83 87-150 (244)
339 cd05710 SIS_1 A subgroup of th 41.0 42 0.0009 25.3 3.8 28 47-74 59-86 (120)
340 cd01037 Restriction_endonuclea 40.8 48 0.001 21.6 3.7 40 31-70 38-80 (80)
341 cd06602 GH31_MGAM_SI_GAA This 40.4 49 0.0011 30.0 4.7 44 29-72 39-89 (339)
342 PLN02499 glycerol-3-phosphate 40.3 18 0.00039 34.7 1.9 21 29-49 7-27 (498)
343 PRK08508 biotin synthase; Prov 40.0 1.3E+02 0.0028 26.4 7.2 60 30-90 57-116 (279)
344 smart00854 PGA_cap Bacterial c 39.7 2.3E+02 0.0051 23.9 12.4 56 15-72 20-83 (239)
345 TIGR02493 PFLA pyruvate format 38.8 62 0.0013 27.2 4.9 34 39-72 68-104 (235)
346 COG3876 Uncharacterized protei 38.6 41 0.00088 30.5 3.7 47 22-70 118-164 (409)
347 cd06593 GH31_xylosidase_YicI Y 38.5 1E+02 0.0022 27.2 6.4 42 30-71 40-88 (308)
348 PF09547 Spore_IV_A: Stage IV 38.1 64 0.0014 30.7 5.0 59 32-90 148-213 (492)
349 COG1501 Alpha-glucosidases, fa 38.0 84 0.0018 32.1 6.3 61 29-89 295-362 (772)
350 COG3340 PepE Peptidase E [Amin 37.8 1.6E+02 0.0035 25.2 7.0 45 47-91 16-67 (224)
351 COG4464 CapC Capsular polysacc 37.7 1.8E+02 0.0039 25.0 7.2 37 32-72 7-43 (254)
352 PRK12564 carbamoyl phosphate s 37.6 2.2E+02 0.0047 26.2 8.5 60 10-84 87-148 (360)
353 COG5663 Uncharacterized conser 37.6 21 0.00045 29.4 1.6 25 32-56 8-32 (194)
354 COG1225 Bcp Peroxiredoxin [Pos 37.6 42 0.00091 27.1 3.4 31 31-61 122-155 (157)
355 TIGR02666 moaA molybdenum cofa 37.5 63 0.0014 29.0 4.9 51 37-88 60-114 (334)
356 PF06189 5-nucleotidase: 5'-nu 37.5 37 0.00081 29.8 3.2 47 62-110 36-83 (264)
357 COG2896 MoaA Molybdenum cofact 37.4 1E+02 0.0022 27.9 6.2 54 35-89 58-114 (322)
358 PRK06242 flavodoxin; Provision 37.0 1.3E+02 0.0028 23.2 6.1 45 45-89 56-105 (150)
359 PF00072 Response_reg: Respons 37.0 95 0.0021 21.9 5.1 62 20-90 34-97 (112)
360 KOG1154 Gamma-glutamyl kinase 37.0 2.9E+02 0.0063 24.2 9.0 24 49-72 35-58 (285)
361 COG0353 RecR Recombinational D 36.9 1.7E+02 0.0038 24.6 6.9 68 5-72 72-146 (198)
362 PF03537 Glyco_hydro_114: Glyc 36.6 67 0.0014 22.3 3.9 33 29-71 26-59 (74)
363 PF13394 Fer4_14: 4Fe-4S singl 36.2 12 0.00027 27.8 0.1 36 39-74 50-92 (119)
364 COG1419 FlhF Flagellar GTP-bin 36.1 40 0.00086 31.6 3.4 54 18-75 325-378 (407)
365 PF14528 LAGLIDADG_3: LAGLIDAD 35.7 6.6 0.00014 27.1 -1.4 42 35-90 8-49 (77)
366 TIGR03127 RuMP_HxlB 6-phospho 35.3 52 0.0011 26.5 3.7 29 47-75 84-112 (179)
367 PRK13602 putative ribosomal pr 35.3 77 0.0017 22.5 4.1 48 42-89 7-56 (82)
368 PRK12360 4-hydroxy-3-methylbut 35.0 1.5E+02 0.0032 26.4 6.7 41 180-228 86-126 (281)
369 KOG0204 Calcium transporting A 35.0 74 0.0016 32.8 5.2 50 39-90 640-689 (1034)
370 COG0826 Collagenase and relate 34.8 1.3E+02 0.0027 27.6 6.4 88 18-111 16-112 (347)
371 COG0548 ArgB Acetylglutamate k 34.5 1.2E+02 0.0027 26.6 6.0 58 30-90 2-59 (265)
372 TIGR02491 NrdG anaerobic ribon 34.2 46 0.00099 26.4 3.1 37 37-73 64-106 (154)
373 cd03110 Fer4_NifH_child This p 34.2 1.9E+02 0.0041 22.9 6.9 13 29-41 92-104 (179)
374 TIGR03470 HpnH hopanoid biosyn 34.1 89 0.0019 28.0 5.3 67 21-88 116-193 (318)
375 PF13466 STAS_2: STAS domain 33.8 1.5E+02 0.0032 20.1 5.4 67 16-88 14-80 (80)
376 cd01421 IMPCH Inosine monophos 33.7 62 0.0013 27.0 3.8 36 48-90 10-45 (187)
377 COG2241 CobL Precorrin-6B meth 33.6 1.2E+02 0.0027 25.7 5.7 104 40-173 73-180 (210)
378 cd05006 SIS_GmhA Phosphoheptos 33.6 58 0.0013 26.2 3.7 28 47-74 113-140 (177)
379 cd01522 RHOD_1 Member of the R 33.4 85 0.0018 23.4 4.4 28 61-88 63-90 (117)
380 PRK07094 biotin synthase; Prov 33.3 1.2E+02 0.0026 27.0 6.0 41 48-90 102-143 (323)
381 cd01012 YcaC_related YcaC rela 32.9 2.4E+02 0.0052 22.1 9.1 27 46-72 20-46 (157)
382 cd05017 SIS_PGI_PMI_1 The memb 32.7 59 0.0013 24.3 3.4 26 47-72 55-80 (119)
383 COG2433 Uncharacterized conser 32.7 2E+02 0.0042 28.5 7.5 57 32-88 257-314 (652)
384 cd01526 RHOD_ThiF Member of th 32.5 78 0.0017 23.7 4.1 28 61-88 71-98 (122)
385 PLN03190 aminophospholipid tra 32.3 68 0.0015 34.4 4.8 35 39-73 719-753 (1178)
386 PF03709 OKR_DC_1_N: Orn/Lys/A 32.3 34 0.00075 25.7 2.0 38 29-72 38-77 (115)
387 TIGR02260 benz_CoA_red_B benzo 32.1 63 0.0014 30.3 4.1 60 18-84 339-408 (413)
388 TIGR00338 serB phosphoserine p 32.0 1E+02 0.0022 25.3 5.0 25 223-247 148-172 (219)
389 PHA02597 30.2 hypothetical pro 31.9 37 0.0008 27.6 2.3 16 225-240 129-144 (197)
390 PLN02334 ribulose-phosphate 3- 31.9 67 0.0014 27.2 3.9 56 14-73 70-126 (229)
391 PF01380 SIS: SIS domain SIS d 31.7 69 0.0015 23.8 3.7 28 47-74 65-92 (131)
392 PTZ00106 60S ribosomal protein 31.6 64 0.0014 24.3 3.4 49 41-89 20-70 (108)
393 cd01781 AF6_RA_repeat2 Ubiquit 31.3 50 0.0011 24.6 2.7 30 61-90 15-44 (100)
394 TIGR00441 gmhA phosphoheptose 31.2 69 0.0015 25.3 3.7 28 47-74 91-118 (154)
395 COG1493 HprK Serine kinase of 31.1 3.8E+02 0.0082 24.2 8.5 42 49-90 68-109 (308)
396 PF01591 6PF2K: 6-phosphofruct 31.0 43 0.00092 28.6 2.6 49 51-100 84-135 (222)
397 PRK01018 50S ribosomal protein 30.9 1.1E+02 0.0024 22.5 4.5 47 43-89 13-61 (99)
398 smart00413 ETS erythroblast tr 30.8 54 0.0012 23.8 2.7 21 166-186 49-69 (87)
399 PTZ00066 pyruvate kinase; Prov 30.8 1.1E+02 0.0024 29.6 5.5 54 15-70 261-316 (513)
400 cd05013 SIS_RpiR RpiR-like pro 30.7 68 0.0015 23.8 3.5 25 49-73 74-98 (139)
401 cd01518 RHOD_YceA Member of th 30.6 69 0.0015 22.9 3.4 67 19-88 7-87 (101)
402 PRK05429 gamma-glutamyl kinase 30.5 3.9E+02 0.0084 24.6 9.0 57 29-90 7-69 (372)
403 TIGR01245 trpD anthranilate ph 30.3 1.3E+02 0.0028 27.2 5.7 71 34-110 71-142 (330)
404 smart00540 LEM in nuclear memb 30.2 26 0.00056 22.0 0.8 20 53-72 10-29 (44)
405 cd06589 GH31 The enzymes of gl 30.2 1.1E+02 0.0023 26.6 5.0 44 29-72 39-89 (265)
406 cd00368 Molybdopterin-Binding 30.2 66 0.0014 28.8 3.9 44 145-197 154-197 (374)
407 PF12965 DUF3854: Domain of un 30.1 1.1E+02 0.0023 23.8 4.5 54 18-71 58-111 (130)
408 TIGR01580 narG respiratory nit 29.7 1.8E+02 0.004 31.3 7.3 91 145-246 243-341 (1235)
409 COG2179 Predicted hydrolase of 29.6 2.3E+02 0.005 23.3 6.4 64 172-247 49-116 (175)
410 PF04055 Radical_SAM: Radical 29.3 97 0.0021 23.4 4.3 59 47-106 58-120 (166)
411 COG2344 AT-rich DNA-binding pr 29.3 92 0.002 26.2 4.1 58 32-89 113-173 (211)
412 TIGR01685 MDP-1 magnesium-depe 29.1 15 0.00033 30.1 -0.5 79 171-249 47-136 (174)
413 cd06597 GH31_transferase_CtsY 29.1 1.2E+02 0.0026 27.5 5.3 26 46-71 82-107 (340)
414 PRK13937 phosphoheptose isomer 29.1 75 0.0016 26.1 3.7 27 47-73 118-144 (188)
415 cd01523 RHOD_Lact_B Member of 28.9 69 0.0015 22.8 3.1 28 61-88 60-87 (100)
416 TIGR01290 nifB nitrogenase cof 28.6 62 0.0013 30.6 3.5 51 37-88 79-135 (442)
417 PF05240 APOBEC_C: APOBEC-like 28.5 69 0.0015 21.1 2.7 21 49-69 2-22 (55)
418 PF12694 MoCo_carrier: Putativ 28.3 53 0.0011 26.2 2.5 35 34-68 61-96 (145)
419 cd05005 SIS_PHI Hexulose-6-pho 28.3 81 0.0018 25.4 3.7 28 47-74 87-114 (179)
420 cd00544 CobU Adenosylcobinamid 28.2 87 0.0019 25.4 3.8 51 20-70 63-124 (169)
421 cd04906 ACT_ThrD-I_1 First of 27.9 58 0.0013 23.0 2.5 24 49-72 53-76 (85)
422 COG0263 ProB Glutamate 5-kinas 27.9 67 0.0014 29.6 3.3 40 47-91 29-68 (369)
423 COG1313 PflX Uncharacterized F 27.8 1.5E+02 0.0032 26.8 5.3 79 157-246 136-220 (335)
424 PF03033 Glyco_transf_28: Glyc 27.8 1.1E+02 0.0024 22.9 4.3 34 52-90 16-49 (139)
425 cd04724 Tryptophan_synthase_al 27.8 1.4E+02 0.0029 25.7 5.2 22 49-70 116-137 (242)
426 cd06604 GH31_glucosidase_II_Ma 27.6 1.2E+02 0.0026 27.4 5.0 42 30-71 40-86 (339)
427 smart00729 Elp3 Elongator prot 27.5 1.6E+02 0.0034 23.3 5.4 53 36-88 51-112 (216)
428 PRK00073 pgk phosphoglycerate 27.3 3E+02 0.0065 25.7 7.6 79 16-110 295-380 (389)
429 PRK05301 pyrroloquinoline quin 27.2 1.4E+02 0.0031 27.1 5.6 68 21-89 107-185 (378)
430 TIGR03190 benz_CoA_bzdN benzoy 27.1 82 0.0018 29.0 3.9 33 36-68 313-349 (377)
431 cd02071 MM_CoA_mut_B12_BD meth 27.0 1.6E+02 0.0034 22.2 4.9 13 49-61 65-77 (122)
432 PF01055 Glyco_hydro_31: Glyco 26.8 1.4E+02 0.003 27.9 5.5 60 29-88 58-126 (441)
433 PRK00881 purH bifunctional pho 26.6 1.3E+02 0.0028 29.1 5.2 101 27-153 1-102 (513)
434 PRK04531 acetylglutamate kinas 26.5 1.6E+02 0.0034 27.6 5.6 57 29-90 35-91 (398)
435 TIGR00216 ispH_lytB (E)-4-hydr 26.5 2.6E+02 0.0056 24.8 6.8 11 218-228 113-123 (280)
436 cd07018 S49_SppA_67K_type Sign 26.4 86 0.0019 26.4 3.7 51 19-70 36-86 (222)
437 PF14336 DUF4392: Domain of un 26.4 4.6E+02 0.01 23.3 8.6 41 48-89 62-102 (291)
438 PRK07308 flavodoxin; Validated 25.9 2.9E+02 0.0063 21.2 6.5 58 29-89 48-116 (146)
439 COG1412 Uncharacterized protei 25.8 1.4E+02 0.003 23.6 4.4 34 52-90 87-121 (136)
440 cd04240 AAK_UC AAK_UC: Unchara 25.7 1.2E+02 0.0025 25.4 4.3 49 42-90 3-52 (203)
441 PF12261 T_hemolysin: Thermost 25.6 1.4E+02 0.0031 24.6 4.7 33 54-90 108-140 (179)
442 PF13353 Fer4_12: 4Fe-4S singl 25.6 1E+02 0.0023 23.2 3.8 26 49-74 70-96 (139)
443 TIGR03822 AblA_like_2 lysine-2 25.3 4.9E+02 0.011 23.3 9.0 29 167-195 240-269 (321)
444 cd02768 MopB_NADH-Q-OR-NuoG2 M 25.2 2.4E+02 0.0051 25.5 6.6 43 145-196 146-189 (386)
445 KOG2469 IMP-GMP specific 5'-nu 25.0 69 0.0015 30.0 2.9 37 29-65 26-65 (424)
446 PRK00188 trpD anthranilate pho 24.5 1.8E+02 0.0039 26.4 5.6 71 34-110 75-146 (339)
447 COG1911 RPL30 Ribosomal protei 24.5 1.2E+02 0.0025 22.6 3.4 31 42-72 15-45 (100)
448 cd01444 GlpE_ST GlpE sulfurtra 24.3 1.9E+02 0.0041 20.0 4.7 67 20-89 6-83 (96)
449 PRK00994 F420-dependent methyl 24.3 1.4E+02 0.003 26.0 4.5 51 35-87 59-110 (277)
450 PF05014 Nuc_deoxyrib_tr: Nucl 23.9 2.1E+02 0.0045 21.0 5.0 45 23-74 57-101 (113)
451 cd00079 HELICc Helicase superf 23.7 2.4E+02 0.0052 20.4 5.4 28 61-88 27-54 (131)
452 smart00481 POLIIIAc DNA polyme 23.6 2.2E+02 0.0047 18.7 4.6 22 51-72 17-38 (67)
453 PRK09522 bifunctional glutamin 23.5 1.7E+02 0.0038 28.4 5.5 57 34-90 273-330 (531)
454 PF14336 DUF4392: Domain of un 23.3 1.6E+02 0.0034 26.3 4.8 70 173-243 27-102 (291)
455 TIGR01163 rpe ribulose-phospha 23.2 1E+02 0.0022 25.2 3.5 76 6-88 4-81 (210)
456 TIGR02803 ExbD_1 TonB system t 23.1 1.1E+02 0.0024 23.1 3.4 59 31-89 50-115 (122)
457 PRK15452 putative protease; Pr 23.1 2.9E+02 0.0062 26.2 6.8 77 29-110 23-108 (443)
458 KOG1643 Triosephosphate isomer 23.1 2.3E+02 0.0049 24.2 5.4 48 77-125 22-69 (247)
459 PRK11145 pflA pyruvate formate 23.0 1.7E+02 0.0036 24.8 4.9 47 19-67 115-166 (246)
460 PRK00414 gmhA phosphoheptose i 22.9 1.1E+02 0.0025 25.2 3.7 27 47-73 123-149 (192)
461 COG2044 Predicted peroxiredoxi 22.8 2.2E+02 0.0047 22.0 4.9 47 26-72 30-85 (120)
462 PRK13938 phosphoheptose isomer 22.8 1.2E+02 0.0025 25.4 3.7 28 47-74 125-152 (196)
463 PTZ00005 phosphoglycerate kina 22.6 4.4E+02 0.0096 24.8 7.8 79 16-110 319-407 (417)
464 PRK02261 methylaspartate mutas 22.5 3.7E+02 0.0079 20.9 6.3 16 46-61 66-81 (137)
465 PRK13111 trpA tryptophan synth 22.5 1.5E+02 0.0033 25.8 4.5 19 50-68 105-123 (258)
466 PF10087 DUF2325: Uncharacteri 22.5 2E+02 0.0043 20.7 4.6 37 145-192 46-82 (97)
467 CHL00200 trpA tryptophan synth 22.4 1.8E+02 0.0038 25.5 4.9 34 36-70 119-152 (263)
468 PF00710 Asparaginase: Asparag 22.3 2.2E+02 0.0048 25.4 5.7 44 23-72 220-263 (313)
469 PF00919 UPF0004: Uncharacteri 22.1 2E+02 0.0044 21.0 4.5 22 133-154 22-43 (98)
470 TIGR00705 SppA_67K signal pept 22.0 1.1E+02 0.0023 30.2 3.8 51 21-71 85-135 (584)
471 PRK13371 4-hydroxy-3-methylbut 22.0 4.2E+02 0.009 24.8 7.4 16 180-199 127-142 (387)
472 PRK07475 hypothetical protein; 22.0 2E+02 0.0044 24.7 5.2 74 11-88 60-146 (245)
473 PRK15447 putative protease; Pr 21.7 1.8E+02 0.004 25.8 5.0 45 146-195 27-71 (301)
474 COG0241 HisB Histidinol phosph 21.5 98 0.0021 25.6 3.0 26 223-248 102-129 (181)
475 cd01894 EngA1 EngA1 subfamily. 21.3 3.5E+02 0.0076 20.1 6.9 20 53-72 96-115 (157)
476 cd02767 MopB_ydeP The MopB_yde 21.3 98 0.0021 30.3 3.4 43 145-196 161-203 (574)
477 PRK14607 bifunctional glutamin 21.1 2.3E+02 0.0049 27.5 5.8 57 34-90 268-325 (534)
478 PRK00087 4-hydroxy-3-methylbut 21.1 2.8E+02 0.006 27.6 6.5 41 180-228 83-123 (647)
479 COG3727 Vsr DNA G:T-mismatch r 21.0 1.1E+02 0.0024 24.2 2.9 20 24-46 53-72 (150)
480 CHL00197 carA carbamoyl-phosph 21.0 6.8E+02 0.015 23.3 10.7 48 11-72 90-138 (382)
481 COG1625 Fe-S oxidoreductase, r 20.8 2.7E+02 0.0059 26.2 5.9 109 47-186 92-205 (414)
482 PF11848 DUF3368: Domain of un 20.8 1.4E+02 0.003 18.7 3.0 19 46-64 16-34 (48)
483 TIGR00355 purH phosphoribosyla 20.8 1.3E+02 0.0029 29.0 4.1 36 48-90 10-45 (511)
484 TIGR02244 HAD-IG-Ncltidse HAD 20.7 54 0.0012 30.0 1.4 20 27-46 9-28 (343)
485 PF05822 UMPH-1: Pyrimidine 5' 20.7 94 0.002 27.1 2.8 42 45-88 89-130 (246)
486 CHL00202 argB acetylglutamate 20.7 2.5E+02 0.0054 24.7 5.6 57 31-90 24-80 (284)
487 cd03012 TlpA_like_DipZ_like Tl 20.6 3.5E+02 0.0076 20.0 5.8 64 20-88 17-86 (126)
488 cd04728 ThiG Thiazole synthase 20.5 1.9E+02 0.0041 25.3 4.6 42 43-88 101-146 (248)
489 PF05221 AdoHcyase: S-adenosyl 20.5 1.1E+02 0.0024 26.9 3.2 44 48-91 53-97 (268)
490 COG2342 Predicted extracellula 20.4 3.1E+02 0.0066 24.5 5.9 47 19-69 34-81 (300)
491 COG1435 Tdk Thymidine kinase [ 20.3 5.3E+02 0.011 21.8 7.0 27 173-199 97-124 (201)
492 PF00162 PGK: Phosphoglycerate 20.3 2.9E+02 0.0062 25.7 6.0 82 15-107 299-382 (384)
493 PF00224 PK: Pyruvate kinase, 20.2 61 0.0013 29.6 1.7 55 14-70 226-282 (348)
494 PRK08883 ribulose-phosphate 3- 20.2 2.2E+02 0.0049 24.1 5.0 36 49-84 93-128 (220)
495 cd06167 LabA_like LabA_like pr 20.1 1.9E+02 0.004 22.2 4.2 37 52-89 89-126 (149)
496 COG1126 GlnQ ABC-type polar am 20.1 1.4E+02 0.003 25.8 3.6 42 28-70 153-194 (240)
No 1
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.4e-44 Score=309.59 Aligned_cols=205 Identities=25% Similarity=0.416 Sum_probs=181.4
Q ss_pred HHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHh-CCCCCccccceeech
Q 025564 22 RHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKS-LGFDPSLFAGAITSG 99 (251)
Q Consensus 22 ~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~-~Gl~~~~~~~Iits~ 99 (251)
.++.+ +|++|+||+|||||+|.+++|||.++|++|+++|++++|+|||++ +++.+.++|+. +|++.. .++|+||+
T Consensus 2 ~~~~~--~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~-~~~i~TS~ 78 (269)
T COG0647 2 FDVMD--KYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVT-PDDIVTSG 78 (269)
T ss_pred cchhh--hcCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCC-HHHeecHH
Confidence 45667 999999999999999999999999999999999999999999996 55568999999 666677 49999999
Q ss_pred hhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCceecCCCCC--ccEEEEecCCCCCCCCCCCccCCHHHHHHH
Q 025564 100 ELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEE--ADFILAHGTEGMGLPSGDVRPMSLQDLEKI 177 (251)
Q Consensus 100 ~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~~~~--~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a 177 (251)
++++.||++... +.+||++|.+.. ..+++..|++++++.++ +++|++ |.|++++|++++.+
T Consensus 79 ~at~~~l~~~~~------~~kv~viG~~~l-~~~l~~~G~~~~~~~~~~~~d~Vv~----------g~d~~~~~e~l~~a 141 (269)
T COG0647 79 DATADYLAKQKP------GKKVYVIGEEGL-KEELEGAGFELVDEEEPARVDAVVV----------GLDRTLTYEKLAEA 141 (269)
T ss_pred HHHHHHHHhhCC------CCEEEEECCcch-HHHHHhCCcEEeccCCCCcccEEEE----------ecCCCCCHHHHHHH
Confidence 999999998765 479999885432 25899999988764333 588998 89999999999999
Q ss_pred HHHHHhCCCcEEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCc--eEEEE
Q 025564 178 LEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVI--ILFLI 247 (251)
Q Consensus 178 ~~~~~~~g~~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~--~~~~~ 247 (251)
+.. +++|++|||||||+.+|.++|++||+|+++++++++ |+++.++|||++.||+.|++.++.+ .+.||
T Consensus 142 ~~~-i~~g~~fI~tNpD~~~p~~~g~~pgaGai~~~~~~~tg~~~~~~GKP~~~i~~~al~~~~~~~~~~~mV 213 (269)
T COG0647 142 LLA-IAAGAPFIATNPDLTVPTERGLRPGAGAIAALLEQATGREPTVIGKPSPAIYEAALEKLGLDRSEVLMV 213 (269)
T ss_pred HHH-HHcCCcEEEeCCCccccCCCCCccCcHHHHHHHHHhhCCcccccCCCCHHHHHHHHHHhCCCcccEEEE
Confidence 985 788999999999999999999999999999999996 8888999999999999999999985 55666
No 2
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-40 Score=283.72 Aligned_cols=211 Identities=19% Similarity=0.259 Sum_probs=184.6
Q ss_pred CChHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCC-Ccccccee
Q 025564 19 NGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFD-PSLFAGAI 96 (251)
Q Consensus 19 ~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~-~~~~~~Ii 96 (251)
+..+||++ ++++|+||+|||||.|..++||+.|++++|++.|+.+.|+||||. +++++.++++++|+. ..+ ++|+
T Consensus 13 ~~~~e~l~--~~DtfifDcDGVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~v~e-~~i~ 89 (306)
T KOG2882|consen 13 EEARELLD--SFDTFIFDCDGVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNSVKE-ENIF 89 (306)
T ss_pred HHHHHHHh--hcCEEEEcCCcceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccccCc-cccc
Confidence 66889999 999999999999999999999999999999999999999999995 678899999999999 664 8999
Q ss_pred echhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCceecC------------------C-CCCccEEEEecCC
Q 025564 97 TSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVE------------------N-VEEADFILAHGTE 157 (251)
Q Consensus 97 ts~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~------------------~-~~~~~~Vvv~~~~ 157 (251)
+|..+.+.||+++... +++||++|.... .++|++.|++... . ..++.+||+
T Consensus 90 ssa~~~a~ylk~~~~~-----~k~Vyvig~~gi-~~eL~~aG~~~~g~~~~~~~~~~~~~~~~~~~~d~~VgAVvv---- 159 (306)
T KOG2882|consen 90 SSAYAIADYLKKRKPF-----GKKVYVIGEEGI-REELDEAGFEYFGGGPDGKDTDGAKSFVLSIGLDPDVGAVVV---- 159 (306)
T ss_pred ChHHHHHHHHHHhCcC-----CCeEEEecchhh-hHHHHHcCceeecCCCCcccccccccchhhcCCCCCCCEEEE----
Confidence 9999999999887632 578999875322 2378888876431 0 245789999
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhCCCcEEEccCCcccc-ccCceeeCchHHHHHHHH-hCCCeEEecCCCHHHHHHH
Q 025564 158 GMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVTV-EARALRVMPGTLASKFEK-LGGEVRWMGKPDKVVQLLC 235 (251)
Q Consensus 158 ~~~~~~g~d~~~~~~~l~~a~~~~~~~g~~li~~n~D~~~~-~~~~~~~~~G~i~~~~~~-~g~~~~~~GKP~~~~~~~a 235 (251)
|+|.+|+|.+|++|++++.++++.|++||.|.+.| .+....||+|+++++++. ++|+|.++|||++.|++++
T Consensus 160 ------g~D~hfsy~KL~kA~~yLqnP~clflatn~D~~~p~~~~~~ipG~G~~v~av~~~t~R~P~v~GKP~~~m~~~l 233 (306)
T KOG2882|consen 160 ------GYDEHFSYPKLMKALNYLQNPGCLFLATNRDATTPPTPGVEIPGAGSFVAAVKFATGRQPIVLGKPSTFMFEYL 233 (306)
T ss_pred ------ecccccCHHHHHHHHHHhCCCCcEEEeccCccccCCCCCeeccCCccHHHHHHHHhcCCCeecCCCCHHHHHHH
Confidence 89999999999999999888899999999999988 444489999999999998 5999999999999999999
Q ss_pred HHhcCCceEEEEe
Q 025564 236 SLSSSVIILFLIF 248 (251)
Q Consensus 236 ~~~l~~~~~~~~~ 248 (251)
+++.+++|.=.++
T Consensus 234 ~~~~~i~psRt~m 246 (306)
T KOG2882|consen 234 LEKFNIDPSRTCM 246 (306)
T ss_pred HHHcCCCcceEEE
Confidence 9999998876555
No 3
>PRK10444 UMP phosphatase; Provisional
Probab=100.00 E-value=3.6e-36 Score=261.18 Aligned_cols=193 Identities=20% Similarity=0.289 Sum_probs=167.9
Q ss_pred ccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCCCccccceeechhhHHHHHhc
Q 025564 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLR 108 (251)
Q Consensus 30 ~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~~ 108 (251)
+++|+||+|||||++.+++||+.++|++|+++|++++|+||++. +.+++.++|+++|++..+ ++|+||+.+++.||++
T Consensus 1 ~~~v~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~-~~i~ts~~~~~~~L~~ 79 (248)
T PRK10444 1 IKNVICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPD-SVFYTSAMATADFLRR 79 (248)
T ss_pred CcEEEEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCH-hhEecHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999985 567899999999999885 9999999999999988
Q ss_pred cCchhhhhcCCeEEEeccCCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCCCcE
Q 025564 109 RDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPM 188 (251)
Q Consensus 109 ~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g~~l 188 (251)
+. +.++|++|.... ..++++.|+++.+ +++++||+ |+|.+++|+++++|+++ +++|++|
T Consensus 80 ~~-------~~~v~~~g~~~l-~~~l~~~g~~~~~--~~~~~Vvv----------g~~~~~~~~~l~~a~~~-l~~g~~~ 138 (248)
T PRK10444 80 QE-------GKKAYVIGEGAL-IHELYKAGFTITD--INPDFVIV----------GETRSYNWDMMHKAAYF-VANGARF 138 (248)
T ss_pred CC-------CCEEEEEcCHHH-HHHHHHCcCEecC--CCCCEEEE----------eCCCCCCHHHHHHHHHH-HHCCCEE
Confidence 63 467888775322 2477888887654 57889999 78899999999999986 5789999
Q ss_pred EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce--EEEE
Q 025564 189 VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII--LFLI 247 (251)
Q Consensus 189 i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~--~~~~ 247 (251)
+++|||..++ |+.|++|+++++++.+ |+++..+|||+|.+|+.+++++++++ .+||
T Consensus 139 i~~n~D~~~~---g~~~~~G~~~~~l~~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~v~I 197 (248)
T PRK10444 139 IATNPDTHGR---GFYPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIV 197 (248)
T ss_pred EEECCCCCCC---CCcCcHHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHcCCCcccEEEE
Confidence 9999999654 5789999999999985 88999999999999999999998655 4554
No 4
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=100.00 E-value=1.8e-35 Score=257.07 Aligned_cols=197 Identities=18% Similarity=0.254 Sum_probs=172.9
Q ss_pred ccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCC-CCchhHHHHhHhCCCCCccccceeechhhHHHHHhc
Q 025564 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLR 108 (251)
Q Consensus 30 ~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s-~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~~ 108 (251)
|++|+||+|||||++.+++|++.++|++|+++|++++|+|||+ |+.+++.++|+++|++... ++|+|++.+++.||++
T Consensus 1 ~~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~-~~iit~~~~~~~~l~~ 79 (249)
T TIGR01457 1 YKGYLIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATL-ETVFTASMATADYMND 79 (249)
T ss_pred CCEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCh-hhEeeHHHHHHHHHHh
Confidence 5899999999999999999999999999999999999999987 6777889999999999884 9999999999999998
Q ss_pred cCchhhhhcCCeEEEeccCCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCCCcE
Q 025564 109 RDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPM 188 (251)
Q Consensus 109 ~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g~~l 188 (251)
+.. ++++|++|.... ..++++.|+++.. +++++|++ |+|..++|+++.++++. +++|+++
T Consensus 80 ~~~------~~~v~~lg~~~l-~~~l~~~g~~~~~--~~~~~Vvv----------g~~~~~~y~~l~~a~~~-l~~g~~~ 139 (249)
T TIGR01457 80 LKL------EKTVYVIGEEGL-KEAIKEAGYVEDK--EKPDYVVV----------GLDRQIDYEKFATATLA-IRKGAHF 139 (249)
T ss_pred cCC------CCEEEEEcChhH-HHHHHHcCCEecC--CCCCEEEE----------eCCCCCCHHHHHHHHHH-HHCCCeE
Confidence 754 467888775322 2377888886543 57899998 78899999999999986 5789999
Q ss_pred EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce--EEEE
Q 025564 189 VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII--LFLI 247 (251)
Q Consensus 189 i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~--~~~~ 247 (251)
+++|+|..+|.+++..+++|+++++++.+ ++++...|||+|.+|+.+++++++++ ++||
T Consensus 140 i~tN~D~~~~~~~~~~~~~G~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~V 201 (249)
T TIGR01457 140 IGTNGDLAIPTERGLLPGNGSLITVLEVATGVKPVYIGKPNAIIMEKAVEHLGTEREETLMV 201 (249)
T ss_pred EEECCCCCCCCCCCCCCCcHHHHHHHHHHhCCCccccCCChHHHHHHHHHHcCCCcccEEEE
Confidence 99999999998888889999999999985 89999999999999999999999865 4554
No 5
>PLN02645 phosphoglycolate phosphatase
Probab=100.00 E-value=2e-34 Score=258.05 Aligned_cols=213 Identities=18% Similarity=0.207 Sum_probs=176.6
Q ss_pred ccCChHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCCCccccce
Q 025564 17 TLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSLFAGA 95 (251)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~~~~~~~I 95 (251)
..++++++++ +||+|+||+|||||++.+++||+.++|++|+++|++++|+||++. +.+++.++|+++|++.. +++|
T Consensus 17 ~~~~~~~~~~--~~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~-~~~I 93 (311)
T PLN02645 17 TLENADELID--SVETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVT-EEEI 93 (311)
T ss_pred CHHHHHHHHH--hCCEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCC-hhhE
Confidence 3458899999 999999999999999999999999999999999999999999984 56778899999999988 5999
Q ss_pred eechhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCceecC------------------CCCCccEEEEecCC
Q 025564 96 ITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVE------------------NVEEADFILAHGTE 157 (251)
Q Consensus 96 its~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~------------------~~~~~~~Vvv~~~~ 157 (251)
++++..+..||++..... ++++|++|.... ..++++.|++.+. ..+++++||+
T Consensus 94 ~ts~~~~~~~l~~~~~~~----~~~V~viG~~~~-~~~l~~~Gi~~~~g~~~~~~~~~~~~~~~~~~~~~i~aVvv---- 164 (311)
T PLN02645 94 FSSSFAAAAYLKSINFPK----DKKVYVIGEEGI-LEELELAGFQYLGGPEDGDKKIELKPGFLMEHDKDVGAVVV---- 164 (311)
T ss_pred eehHHHHHHHHHhhccCC----CCEEEEEcCHHH-HHHHHHCCCEEecCccccccccccccccccccCCCCCEEEE----
Confidence 999999999998754211 356888775322 2366777775421 1235578998
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHh-CCCcEEEccCCccccccCc-eeeCchHHHHHHHHh-CCCeEEecCCCHHHHHH
Q 025564 158 GMGLPSGDVRPMSLQDLEKILEICAS-KKIPMVVANPDYVTVEARA-LRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLL 234 (251)
Q Consensus 158 ~~~~~~g~d~~~~~~~l~~a~~~~~~-~g~~li~~n~D~~~~~~~~-~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~ 234 (251)
|+|++++|++++.+++++.. +|+++|+||+|..++...+ ..+|.|++.++++.+ ++++.++|||+|.+|+.
T Consensus 165 ------g~d~~~~~~~l~~a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~ 238 (311)
T PLN02645 165 ------GFDRYINYYKIQYATLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDY 238 (311)
T ss_pred ------ecCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHHHHHHHHHHhCCCcccCCCChHHHHHH
Confidence 88999999999999986543 6999999999998865554 678999999999875 88899999999999999
Q ss_pred HHHhcCCce--EEEE
Q 025564 235 CSLSSSVII--LFLI 247 (251)
Q Consensus 235 a~~~l~~~~--~~~~ 247 (251)
+++++++++ .+||
T Consensus 239 a~~~~~~~~~~~~~V 253 (311)
T PLN02645 239 LANKFGIEKSQICMV 253 (311)
T ss_pred HHHHcCCCcccEEEE
Confidence 999998765 5555
No 6
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=100.00 E-value=1.4e-32 Score=237.71 Aligned_cols=215 Identities=25% Similarity=0.377 Sum_probs=173.2
Q ss_pred hHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC-ccccceeech
Q 025564 21 LRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP-SLFAGAITSG 99 (251)
Q Consensus 21 ~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~-~~~~~Iits~ 99 (251)
++++++ +|++|+||+|||||++.+++||+.++|++|+++|++++|+||++++..++.++|+++|++. . |+.|++++
T Consensus 1 ~~~~~~--~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~-~~~Ii~s~ 77 (242)
T TIGR01459 1 IFDLIN--DYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADL-PEMIISSG 77 (242)
T ss_pred Chhhhh--cCCEEEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccc-cceEEccH
Confidence 468899 9999999999999999999999999999999999999999998876656668899999997 7 69999999
Q ss_pred hhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHH
Q 025564 100 ELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILE 179 (251)
Q Consensus 100 ~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~ 179 (251)
+++..++.+..... -.-+.+++++|.+..+..+++..+....++..++++||+.+ ..|..++|+.+..+++
T Consensus 78 ~~~~~~l~~~~~~~-~~~~~~~~~vGd~~~d~~~~~~~~~~~~~~~~~~~~vvv~~--------~~~~~~~~~~~~~~l~ 148 (242)
T TIGR01459 78 EIAVQMILESKKRF-DIRNGIIYLLGHLENDIINLMQCYTTDDENKANASLITIYR--------SENEKLDLDEFDELFA 148 (242)
T ss_pred HHHHHHHHhhhhhc-cCCCceEEEeCCcccchhhhcCCCccccCCcccCcEEEEcC--------CCcccCCHHHHHHHHH
Confidence 99888886532100 00135688877644334456565654333335678888742 1345689999999998
Q ss_pred HHHhCCCcEEEccCCccccccCceeeCchHHHHHHHHhCCCeEEecCCCHHHHHHHHHhcCCc---eEEEE
Q 025564 180 ICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKVVQLLCSLSSSVI---ILFLI 247 (251)
Q Consensus 180 ~~~~~g~~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~g~~~~~~GKP~~~~~~~a~~~l~~~---~~~~~ 247 (251)
.+.++|+++|+||+|..++...+..++.|++.++++.+|+++...|||+|.+|+.+++++++. ...||
T Consensus 149 ~l~~~g~~~i~tN~d~~~~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~~v 219 (242)
T TIGR01459 149 PIVARKIPNICANPDRGINQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRMLMV 219 (242)
T ss_pred HHHhCCCcEEEECCCEeccCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEEEE
Confidence 877789999999999999987778899999999998888888889999999999999999864 36665
No 7
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=100.00 E-value=5.8e-33 Score=245.00 Aligned_cols=202 Identities=20% Similarity=0.230 Sum_probs=170.4
Q ss_pred CccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCCCccccceeechhhHHHHHh
Q 025564 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSLFAGAITSGELTHQYLL 107 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~ 107 (251)
+|++|+||+|||||++.+++||+.++|++|+++|++++++|||+. ++.++..+|+++|+.... ++|+||+.+++.||+
T Consensus 1 ~~~~~~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~-~~i~ts~~~~~~~l~ 79 (279)
T TIGR01452 1 RAQGFIFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLA-EQLFSSALCAARLLR 79 (279)
T ss_pred CccEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCh-hhEecHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999984 566788899999999885 999999999999999
Q ss_pred ccCchhhhhcCCeEEEeccCCcccccccCCCceecCC------------------CCCccEEEEecCCCCCCCCCCCccC
Q 025564 108 RRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVEN------------------VEEADFILAHGTEGMGLPSGDVRPM 169 (251)
Q Consensus 108 ~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~------------------~~~~~~Vvv~~~~~~~~~~g~d~~~ 169 (251)
++..+ +.++|++|.... ..++++.|+..+.. .+++++||+ |+|.++
T Consensus 80 ~~~~~-----~~~v~~iG~~~~-~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvv----------~~d~~~ 143 (279)
T TIGR01452 80 QPPDA-----PKAVYVIGEEGL-RAELDAAGIRLAGDPSAGDGAAPRGSGAFMKLEENVGAVVV----------GYDEHF 143 (279)
T ss_pred hhCcC-----CCEEEEEcCHHH-HHHHHHCCCEEecCcccccccchhhcccccccCCCCCEEEE----------ecCCCC
Confidence 85322 467998875321 23777778765421 246888998 789999
Q ss_pred CHHHHHHHHHHHHhCCCcEEEccCCccccccCc-eeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce--EE
Q 025564 170 SLQDLEKILEICASKKIPMVVANPDYVTVEARA-LRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII--LF 245 (251)
Q Consensus 170 ~~~~l~~a~~~~~~~g~~li~~n~D~~~~~~~~-~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~--~~ 245 (251)
+|+.++.+++++..+|+.+++||+|..++...+ ..++.|++.++++.+ |+++..+|||+|.+|+.+++++++++ .+
T Consensus 144 ~y~~i~~~l~~L~~~g~~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~l 223 (279)
T TIGR01452 144 SYAKLREACAHLREPGCLFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPARTL 223 (279)
T ss_pred CHHHHHHHHHHHhcCCCEEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhEE
Confidence 999999999987667999999999998886655 478999999998874 88999999999999999999998755 55
Q ss_pred EE
Q 025564 246 LI 247 (251)
Q Consensus 246 ~~ 247 (251)
||
T Consensus 224 mI 225 (279)
T TIGR01452 224 MV 225 (279)
T ss_pred EE
Confidence 54
No 8
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=100.00 E-value=1.4e-31 Score=230.88 Aligned_cols=192 Identities=29% Similarity=0.412 Sum_probs=162.0
Q ss_pred EEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCC-CCchhHHHHhHh-CCCCCccccceeechhhHHHHHhccC
Q 025564 33 WLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKS-LGFDPSLFAGAITSGELTHQYLLRRD 110 (251)
Q Consensus 33 ~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s-~~~~~~~~~L~~-~Gl~~~~~~~Iits~~~~~~~L~~~~ 110 (251)
|+||+|||||++.+++||+.++|+.|+++|+++.|+|||+ ++.+++.++|.+ +|++.. .+++++|+.+++.||++++
T Consensus 1 ~lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~-~~~iits~~~~~~~l~~~~ 79 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVS-PDQIITSGSVTKDLLRQRF 79 (236)
T ss_pred CEEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCC-HHHeeeHHHHHHHHHHHhC
Confidence 5899999999999999999999999999999999999998 677788899998 899988 4999999999999999765
Q ss_pred chhhhhcCCeEEEeccCCcccccccCCCcee--cCC------CCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHH
Q 025564 111 DAWFAALGRSCIHMTWSDRGAISLEGLGLKV--VEN------VEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICA 182 (251)
Q Consensus 111 ~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~--~~~------~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~ 182 (251)
. ++++|++|.+.. ..++++.|++. ..+ ...+++|++ |.|.+++|.+++.+.++ +
T Consensus 80 ~------~~~v~v~G~~~~-~~~l~~~g~~~~~~~~~~~~~~~~~~~~vv~----------~~~~~~~~~~~~~a~~~-l 141 (236)
T TIGR01460 80 E------GEKVYVIGVGEL-RESLEGLGFRNDFFDDIDHLAIEKIPAAVIV----------GEPSDFSYDELAKAAYL-L 141 (236)
T ss_pred C------CCEEEEECCHHH-HHHHHHcCCcCcccCcccccccCCCCeEEEE----------CCCCCcCHHHHHHHHHH-H
Confidence 3 467888875322 24778888751 211 123567777 78899999999999986 5
Q ss_pred hCC-CcEEEccCCccccccCc-eeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564 183 SKK-IPMVVANPDYVTVEARA-LRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII 243 (251)
Q Consensus 183 ~~g-~~li~~n~D~~~~~~~~-~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~ 243 (251)
++| ++|++||+|..++.+.| ..++.|++.++++.+ ++++...|||+|.+|+.+++++++++
T Consensus 142 ~~~~~~~i~tN~d~~~~~~~g~~~~~~g~~~~~i~~~~g~~~~~~~KP~~~~~~~~~~~~~~~~ 205 (236)
T TIGR01460 142 AEGDVPFIAANRDDLVRLGDGRFRPGAGAIAAGIKELSGREPTVVGKPSPAIYRAALNLLQARP 205 (236)
T ss_pred hCCCCeEEEECCCCCCCCCCCcEeecchHHHHHHHHHhCceeeeecCCCHHHHHHHHHHhCCCC
Confidence 566 99999999987777676 889999999999985 88888899999999999999998653
No 9
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.97 E-value=5.4e-30 Score=223.66 Aligned_cols=192 Identities=19% Similarity=0.267 Sum_probs=158.7
Q ss_pred ccEEEEeccccccCCCc----cCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCCCccccceeechhhHHH
Q 025564 30 FKAWLLDQFGVLHDGKK----PYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104 (251)
Q Consensus 30 ~~~~l~D~DGvL~~g~~----~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~ 104 (251)
+++|+||+|||||++.+ ++||+.++|++|+++|++++|+|||+. +.+++.++|+.+|++..+ ++|+||+++++.
T Consensus 1 ~k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~-~~i~ts~~~~~~ 79 (257)
T TIGR01458 1 VKGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISE-DEVFTPAPAARQ 79 (257)
T ss_pred CCEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCH-HHeEcHHHHHHH
Confidence 47899999999999988 999999999999999999999999985 556788999999999884 999999999999
Q ss_pred HHhccCchhhhhcCCeEEEeccCCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCC-ccCCHHHHHHHHHHHHh
Q 025564 105 YLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDV-RPMSLQDLEKILEICAS 183 (251)
Q Consensus 105 ~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d-~~~~~~~l~~a~~~~~~ 183 (251)
||++.+ .++|+++.+.. ..++. |+. .+++++|++ |+| .+++|+++..+++++..
T Consensus 80 ~l~~~~--------~~~~~~g~~~~-~~~~~--~~~----~~~~~~Vv~----------g~~~~~~~y~~l~~a~~~L~~ 134 (257)
T TIGR01458 80 LLEEKQ--------LRPMLLVDDRV-LPDFD--GID----TSDPNCVVM----------GLAPEHFSYQILNQAFRLLLD 134 (257)
T ss_pred HHHhcC--------CCeEEEECccH-HHHhc--cCC----CCCCCEEEE----------ecccCccCHHHHHHHHHHHHc
Confidence 998753 35777664321 23443 321 246788888 665 48999999999997554
Q ss_pred CCCc-EEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce--EEEE
Q 025564 184 KKIP-MVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII--LFLI 247 (251)
Q Consensus 184 ~g~~-li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~--~~~~ 247 (251)
.+.+ ++++|+|..++...+..++.|++.++++.+ ++++..+|||+|.+|+.+++++++++ .+||
T Consensus 135 ~~~~~~iatn~~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~v 202 (257)
T TIGR01458 135 GAKPLLIAIGKGRYYKRKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAVMI 202 (257)
T ss_pred CCCCEEEEeCCCCCCcCCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEEEE
Confidence 4544 678899999998877789999999999975 88899999999999999999998766 4444
No 10
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=99.97 E-value=1.2e-30 Score=234.53 Aligned_cols=188 Identities=22% Similarity=0.273 Sum_probs=151.6
Q ss_pred EEEEeccccccCCCccCccHHHHHHHHHHC----CCeEEEEeCCCC-CchhHHHHh-HhCCCCCccccceeechhhHHHH
Q 025564 32 AWLLDQFGVLHDGKKPYPGAISTLEMLATT----GAKMVVISNSSR-RASTTIDKL-KSLGFDPSLFAGAITSGELTHQY 105 (251)
Q Consensus 32 ~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~----G~~v~ivTN~s~-~~~~~~~~L-~~~Gl~~~~~~~Iits~~~~~~~ 105 (251)
+|+||+|||||++..++||+.++++.|+++ |+++.|+||++. +.+++.++| +++|++..+ ++|+++...+..|
T Consensus 2 ~~ifD~DGvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~-~~i~~s~~~~~~l 80 (321)
T TIGR01456 2 GFAFDIDGVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSP-LQVIQSHSPYKSL 80 (321)
T ss_pred EEEEeCcCceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCH-HHHHhhhHHHHHH
Confidence 699999999999999999999999999998 999999999984 556677777 889999885 8999999988777
Q ss_pred HhccCchhhhhcCCeEEEeccCCcccccccCCCceec---C-------C-----------------------CCCccEEE
Q 025564 106 LLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVV---E-------N-----------------------VEEADFIL 152 (251)
Q Consensus 106 L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~---~-------~-----------------------~~~~~~Vv 152 (251)
+++. . .++|++|.+.. ..++++.|+..+ + + ..++++||
T Consensus 81 l~~~-~-------~~v~viG~~~~-~~~l~~~G~~~vv~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aVv 151 (321)
T TIGR01456 81 VNKY-E-------KRILAVGTGSV-RGVAEGYGFQNVVHQDEIVRYFRDIDPFSGMSDEQVREYSRDIPDLTTKRFDAVL 151 (321)
T ss_pred HHHc-C-------CceEEEeChHH-HHHHHHcCCcccccHHHHHhcCCCCCcccccCHHHhhcccccccccCCCceeEEE
Confidence 7543 2 35777765432 235666666521 0 0 13678899
Q ss_pred EecCCCCCCCCCCCccCCHHHHHHHHHHHHhCC----------CcEEEccCCccccccCc-eeeCchHHHHHHHH----h
Q 025564 153 AHGTEGMGLPSGDVRPMSLQDLEKILEICASKK----------IPMVVANPDYVTVEARA-LRVMPGTLASKFEK----L 217 (251)
Q Consensus 153 v~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g----------~~li~~n~D~~~~~~~~-~~~~~G~i~~~~~~----~ 217 (251)
+ |.|+..+|.+++.+++++...| ++|++||+|++||.+.| +++|+|+|++++++ +
T Consensus 152 v----------~~d~~~~~~~l~~~~~~l~~~g~~g~~~~~~~~~~i~~n~D~~~p~~~g~~~~g~Ga~~~~l~~~~~~~ 221 (321)
T TIGR01456 152 V----------FNDPVDWAADIQIISDALNSEGLPGEKSGKPSIPIYFSNQDLLWANEYKLNRFGQGAFRLLLERIYLEL 221 (321)
T ss_pred E----------ecCchHHhhhHHHHHHHHhCCCCcCCCCCCCCCCEEEeCCCEeeccCCCCceechHHHHHHHHHHHHHh
Confidence 8 6678788889999998754422 79999999999999888 59999999999986 3
Q ss_pred -CCCe--EEecCCCHHHHHHHHHhc
Q 025564 218 -GGEV--RWMGKPDKVVQLLCSLSS 239 (251)
Q Consensus 218 -g~~~--~~~GKP~~~~~~~a~~~l 239 (251)
|+++ +++|||+|.+|+.|++++
T Consensus 222 tg~~~~~~~~GKP~~~~~~~a~~~l 246 (321)
T TIGR01456 222 NGKPLQYYTLGKPTKLTYDFAEDVL 246 (321)
T ss_pred cCCCcceEEcCCCChHHHHHHHHHH
Confidence 5644 788999999999999888
No 11
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=99.96 E-value=7.5e-29 Score=204.00 Aligned_cols=198 Identities=23% Similarity=0.289 Sum_probs=166.8
Q ss_pred cCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCCCccccceeechhhHHHHH
Q 025564 28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSLFAGAITSGELTHQYL 106 (251)
Q Consensus 28 ~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L 106 (251)
+.++++++|+-||||....++||+.|++++|+.++.++-|+||.+. +.+.++++|+++||+..+ ++|+||..+++.|+
T Consensus 5 ~~v~gvLlDlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~e-eei~tsl~aa~~~~ 83 (262)
T KOG3040|consen 5 RAVKGVLLDLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSE-EEIFTSLPAARQYL 83 (262)
T ss_pred cccceEEEeccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccH-HHhcCccHHHHHHH
Confidence 4789999999999999999999999999999999999999999986 567899999999999995 99999999999999
Q ss_pred hccCchhhhhcCCeEEEeccCCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhC-C
Q 025564 107 LRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASK-K 185 (251)
Q Consensus 107 ~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~-g 185 (251)
.++.. ++.+++. ++.+.++.. + +..+|++||++. -...|+|+.+++|++.+++. .
T Consensus 84 ~~~~l-------rP~l~v~--d~a~~dF~g--i----dTs~pn~VVigl---------ape~F~y~~ln~AFrvL~e~~k 139 (262)
T KOG3040|consen 84 EENQL-------RPYLIVD--DDALEDFDG--I----DTSDPNCVVIGL---------APEGFSYQRLNRAFRVLLEMKK 139 (262)
T ss_pred HhcCC-------CceEEEc--ccchhhCCC--c----cCCCCCeEEEec---------CcccccHHHHHHHHHHHHcCCC
Confidence 87654 3333322 222223332 2 235889999943 25689999999999977665 4
Q ss_pred CcEEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce--EEEEeec
Q 025564 186 IPMVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII--LFLIFLD 250 (251)
Q Consensus 186 ~~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~--~~~~~~~ 250 (251)
.++|+.|..+++....|+-+|+|++++++|.+ |+++.++|||+|.+|+.|++.+|++| .+||-=|
T Consensus 140 ~~LIai~kgryykr~~Gl~lgpG~fv~aLeyatg~~a~vvGKP~~~fFe~al~~~gv~p~~aVMIGDD 207 (262)
T KOG3040|consen 140 PLLIAIGKGRYYKRVDGLCLGPGPFVAALEYATGCEATVVGKPSPFFFESALQALGVDPEEAVMIGDD 207 (262)
T ss_pred CeEEEecCceeeeeccccccCchHHHHHhhhccCceEEEecCCCHHHHHHHHHhcCCChHHheEEccc
Confidence 78999999999999999999999999999985 99999999999999999999998876 5676433
No 12
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=99.88 E-value=3.8e-23 Score=155.80 Aligned_cols=99 Identities=30% Similarity=0.465 Sum_probs=82.1
Q ss_pred EEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCCCccccceeechhhHHHHHhccCc
Q 025564 33 WLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDD 111 (251)
Q Consensus 33 ~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~~~~~ 111 (251)
|+||+|||||+|.+++|||.|+|++|+++|++++|+|||++ +++++.++|+++|++..+ ++|+||+++++.||+++..
T Consensus 1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~-~~i~ts~~~~~~~l~~~~~ 79 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDE-DEIITSGMAAAEYLKEHKG 79 (101)
T ss_dssp EEEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--G-GGEEEHHHHHHHHHHHHTT
T ss_pred CEEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCc-CEEEChHHHHHHHHHhcCC
Confidence 79999999999999999999999999999999999999985 568899999999999985 9999999999999998644
Q ss_pred hhhhhcCCeEEEeccCCcccccccCCCc
Q 025564 112 AWFAALGRSCIHMTWSDRGAISLEGLGL 139 (251)
Q Consensus 112 ~~~~~~g~~~~~~g~~~~~~~~l~~~g~ 139 (251)
++++|++|.+.. ..++++.|+
T Consensus 80 ------~~~v~vlG~~~l-~~~l~~~G~ 100 (101)
T PF13344_consen 80 ------GKKVYVLGSDGL-REELREAGF 100 (101)
T ss_dssp ------SSEEEEES-HHH-HHHHHHTTE
T ss_pred ------CCEEEEEcCHHH-HHHHHHcCC
Confidence 589999885422 236777776
No 13
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=99.84 E-value=7.8e-20 Score=159.21 Aligned_cols=197 Identities=22% Similarity=0.293 Sum_probs=140.1
Q ss_pred cEEEEeccccccCCCccCccHHHHHHHHHHC----CCeEEEEeCCCCCc-hhHHHHhH-hCCCCCccccceeechhhHHH
Q 025564 31 KAWLLDQFGVLHDGKKPYPGAISTLEMLATT----GAKMVVISNSSRRA-STTIDKLK-SLGFDPSLFAGAITSGELTHQ 104 (251)
Q Consensus 31 ~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~----G~~v~ivTN~s~~~-~~~~~~L~-~~Gl~~~~~~~Iits~~~~~~ 104 (251)
-+|+||+||||.+|.+++||+.++|+.|.+. .+|++|+||..... ..-++.|. .+|++..+ ++|+.|+...+.
T Consensus 36 fgfafDIDGVL~RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~-dqviqSHsP~r~ 114 (389)
T KOG1618|consen 36 FGFAFDIDGVLFRGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSA-DQVIQSHSPFRL 114 (389)
T ss_pred eeEEEecccEEEecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCH-HHHHhhcChHHH
Confidence 3899999999999999999999999999998 99999999987432 23345564 48999996 999999999988
Q ss_pred HHhccCchhhhhcCCeEEEeccCCcccccccCCCceec-----------------------------CC---CCCccEEE
Q 025564 105 YLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVV-----------------------------EN---VEEADFIL 152 (251)
Q Consensus 105 ~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~-----------------------------~~---~~~~~~Vv 152 (251)
+...++ +.+++.|.++. ....+..|++-+ .+ ....|+|+
T Consensus 115 l~~~~~--------k~vLv~G~~~v-r~vAegyGFk~Vvt~D~l~k~f~~ldP~t~~~~~~k~~~~~R~~~~~r~ieAv~ 185 (389)
T KOG1618|consen 115 LVEYHY--------KRVLVVGQGSV-REVAEGYGFKNVVTVDELAKYFPLLDPFTDLSRELKTTKLARDRELFRRIEAVL 185 (389)
T ss_pred Hhhhhh--------ceEEEecCCcH-HHHhhccCccceeeHHHHHHhCCCcccccchhHhhhcccchhccccccceeEEE
Confidence 774333 34555554322 112333333210 00 23566766
Q ss_pred E-ecCCCCCCCCCCCccCCHHHHHHHHHHHHhC--------------CCcEEEccCCccccccCc-eeeCchHHHHHHHH
Q 025564 153 A-HGTEGMGLPSGDVRPMSLQDLEKILEICASK--------------KIPMVVANPDYVTVEARA-LRVMPGTLASKFEK 216 (251)
Q Consensus 153 v-~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~--------------g~~li~~n~D~~~~~~~~-~~~~~G~i~~~~~~ 216 (251)
+ .++.+|++ ++|-.+..+..+ .+|++++|.|+.|+.+.. +++|.|+|.-++|.
T Consensus 186 ~~~dPv~W~~-----------dlQli~D~l~snG~~gt~~~a~~~~Phipiy~sN~DLlW~~e~~lpR~G~GaF~l~les 254 (389)
T KOG1618|consen 186 LLGDPVRWET-----------DLQLIMDVLLSNGSPGTGRLATGPYPHIPIYASNMDLLWMAEYKLPRFGHGAFRLCLES 254 (389)
T ss_pred EecCchhhhh-----------hHHHHHHHHhcCCCCCcccccCCCCCCCceEEecccccccccCCCccccchHHHHHHHH
Confidence 5 45577762 344444432212 248999999999999988 79999998887764
Q ss_pred ----hCCC---eEEecCCCHHHHHHHHHhc-----------CCceEEEEe
Q 025564 217 ----LGGE---VRWMGKPDKVVQLLCSLSS-----------SVIILFLIF 248 (251)
Q Consensus 217 ----~g~~---~~~~GKP~~~~~~~a~~~l-----------~~~~~~~~~ 248 (251)
..++ ...+|||++..|++|.+.+ -++.+|||-
T Consensus 255 iy~kltGk~L~~~t~GKPt~ltY~~A~~vl~~~ak~~~~~~~~k~lymvG 304 (389)
T KOG1618|consen 255 IYQKLTGKPLRYTTLGKPTKLTYDYAEDVLRRQAKRRGGAAPIKKLYMVG 304 (389)
T ss_pred HHHHhcCCcccccccCCCceehHHhHHHHHHHHHHhhcccCCcceeeeec
Confidence 3443 3699999999999997654 367788873
No 14
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.03 E-value=5.7e-10 Score=95.35 Aligned_cols=102 Identities=23% Similarity=0.365 Sum_probs=75.3
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHHHHhccCchhhhhcCCeEEEec
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMT 125 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~~~~~~~~~~~g~~~~~~g 125 (251)
.++||+.++|+.|+++|++++++||+++.. +...|+.+|+..+ |+.+++++++... +| -..+|+
T Consensus 86 ~~~pGv~~~l~~L~~~~i~~avaS~s~~~~--~~~~L~~~gl~~~-f~~~v~~~dv~~~------KP-----~Pd~yL-- 149 (221)
T COG0637 86 KPIPGVVELLEQLKARGIPLAVASSSPRRA--AERVLARLGLLDY-FDVIVTADDVARG------KP-----APDIYL-- 149 (221)
T ss_pred CCCccHHHHHHHHHhcCCcEEEecCChHHH--HHHHHHHccChhh-cchhccHHHHhcC------CC-----CCHHHH--
Confidence 679999999999999999999999987543 5678889999999 7999999987764 22 122332
Q ss_pred cCCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCCCcEEEccC
Q 025564 126 WSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANP 193 (251)
Q Consensus 126 ~~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g~~li~~n~ 193 (251)
...+.+|. ...++||+.++ ...++..+..|+..|+-+.
T Consensus 150 ------~Aa~~Lgv------~P~~CvviEDs------------------~~Gi~Aa~aAGm~vv~v~~ 187 (221)
T COG0637 150 ------LAAERLGV------DPEECVVVEDS------------------PAGIQAAKAAGMRVVGVPA 187 (221)
T ss_pred ------HHHHHcCC------ChHHeEEEecc------------------hhHHHHHHHCCCEEEEecC
Confidence 23455564 44578998654 6667666778998777543
No 15
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.97 E-value=8.1e-10 Score=97.17 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=65.9
Q ss_pred HhcccCccEEEEeccccccCCCcc----CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeech
Q 025564 24 IAETRRFKAWLLDQFGVLHDGKKP----YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (251)
Q Consensus 24 ~~~~~~~~~~l~D~DGvL~~g~~~----~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~ 99 (251)
..+ .++.++||+||||.+..+. -||+.|+|++|+++|++++++||+++.. +...|+++|+..+ |+.|++++
T Consensus 122 ~~~--~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~--v~~~L~~lGLd~Y-FdvIIs~G 196 (301)
T TIGR01684 122 VFE--PPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDH--VVESMRKVKLDRY-FDIIISGG 196 (301)
T ss_pred ccc--cceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHH--HHHHHHHcCCCcc-cCEEEECC
Confidence 445 5789999999999998875 3999999999999999999999988543 5578999999998 79999999
Q ss_pred hhHHHH
Q 025564 100 ELTHQY 105 (251)
Q Consensus 100 ~~~~~~ 105 (251)
+....+
T Consensus 197 dv~~~k 202 (301)
T TIGR01684 197 HKAEEY 202 (301)
T ss_pred ccccCC
Confidence 886543
No 16
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.96 E-value=2.7e-09 Score=83.38 Aligned_cols=58 Identities=31% Similarity=0.466 Sum_probs=49.0
Q ss_pred cEEEEeccccccCC---------CccCccHHHHHHHHHHCCCeEEEEeCCCC-C-----chhHHHHhHhCCCC
Q 025564 31 KAWLLDQFGVLHDG---------KKPYPGAISTLEMLATTGAKMVVISNSSR-R-----ASTTIDKLKSLGFD 88 (251)
Q Consensus 31 ~~~l~D~DGvL~~g---------~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~-----~~~~~~~L~~~Gl~ 88 (251)
|+++||+||||+++ ..++||+.++|++|+++|++++++||++. . .+.+...++++|+.
T Consensus 1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred CEEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 58999999999974 47899999999999999999999999872 1 23466778889987
No 17
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.96 E-value=1.1e-09 Score=85.73 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=50.5
Q ss_pred cEEEEeccccccCCC-------------ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCC-------CCCc
Q 025564 31 KAWLLDQFGVLHDGK-------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG-------FDPS 90 (251)
Q Consensus 31 ~~~l~D~DGvL~~g~-------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~G-------l~~~ 90 (251)
+.++||+|||||.+. .++||+.++|+.|+++|++++++||++... .....++.+| +...
T Consensus 1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~-~~~~~l~~~~~~~~i~~l~~~ 79 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDPH-VAYELLKIFEDFGIIFPLAEY 79 (128)
T ss_pred CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCCCHH-HHHHHHHhccccccchhhHhh
Confidence 578999999999983 168999999999999999999999984321 2334566677 5555
Q ss_pred cccceeech
Q 025564 91 LFAGAITSG 99 (251)
Q Consensus 91 ~~~~Iits~ 99 (251)
|+.++++.
T Consensus 80 -f~~~~~~~ 87 (128)
T TIGR01681 80 -FDPLTIGY 87 (128)
T ss_pred -hhhhhhcC
Confidence 56655553
No 18
>PRK11587 putative phosphatase; Provisional
Probab=98.89 E-value=7.5e-09 Score=87.85 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=39.8
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~ 100 (251)
.++||+.++|+.|+++|++++++||+++.. ....++..|+.. ++.++++++
T Consensus 83 ~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~--~~~~l~~~~l~~--~~~i~~~~~ 133 (218)
T PRK11587 83 TALPGAIALLNHLNKLGIPWAIVTSGSVPV--ASARHKAAGLPA--PEVFVTAER 133 (218)
T ss_pred eeCcCHHHHHHHHHHcCCcEEEEcCCCchH--HHHHHHhcCCCC--ccEEEEHHH
Confidence 458999999999999999999999987532 345677788853 466776654
No 19
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.87 E-value=6e-09 Score=88.03 Aligned_cols=53 Identities=28% Similarity=0.357 Sum_probs=45.1
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~ 101 (251)
.++||+.++|++|+++|++++++||+.+. .+...|+.+|+..+ |+.++++.+.
T Consensus 82 ~~~~g~~~~l~~L~~~g~~~~i~S~~~~~--~~~~~l~~~gl~~~-f~~i~~~~~~ 134 (214)
T PRK13288 82 TEYETVYETLKTLKKQGYKLGIVTTKMRD--TVEMGLKLTGLDEF-FDVVITLDDV 134 (214)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHcCChhc-eeEEEecCcC
Confidence 46899999999999999999999998743 36678899999988 7889887654
No 20
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.81 E-value=7.7e-09 Score=91.11 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=64.6
Q ss_pred CccEEEEeccccccCCCccC----ccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHH
Q 025564 29 RFKAWLLDQFGVLHDGKKPY----PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~~~~----pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~ 104 (251)
-.+.++||+||||....+.+ |++.++|++|+++|++++++||+++.. +...|+++|+... |+.|++++.....
T Consensus 127 ~~~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~--v~~~Le~lgL~~y-FDvII~~g~i~~k 203 (303)
T PHA03398 127 IPHVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREH--VVHSLKETKLEGY-FDIIICGGRKAGE 203 (303)
T ss_pred eccEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChHH--HHHHHHHcCCCcc-ccEEEECCCcccc
Confidence 46799999999999987754 999999999999999999999987543 5678999999988 7889999988877
Q ss_pred H
Q 025564 105 Y 105 (251)
Q Consensus 105 ~ 105 (251)
+
T Consensus 204 ~ 204 (303)
T PHA03398 204 Y 204 (303)
T ss_pred c
Confidence 6
No 21
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.81 E-value=6.6e-09 Score=88.87 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=44.7
Q ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT 102 (251)
Q Consensus 47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~ 102 (251)
++||+.++|+.|+++|++++++||+++.. +...++++|+... |+.++++++..
T Consensus 94 ~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~--~~~~l~~~~l~~~-fd~iv~s~~~~ 146 (224)
T PRK14988 94 LREDTVPFLEALKASGKRRILLTNAHPHN--LAVKLEHTGLDAH-LDLLLSTHTFG 146 (224)
T ss_pred cCCCHHHHHHHHHhCCCeEEEEeCcCHHH--HHHHHHHCCcHHH-CCEEEEeeeCC
Confidence 57999999999999999999999987533 5567888999888 79999887653
No 22
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=98.79 E-value=8.9e-09 Score=94.37 Aligned_cols=54 Identities=17% Similarity=0.287 Sum_probs=46.6
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT 102 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~ 102 (251)
.++||+.++|+.|+++|++++++||+++. .+...|+++|+..+ |+.|++++++.
T Consensus 216 ~l~pGa~ElL~~Lk~~GiklaIaSn~~~~--~~~~~L~~lgL~~y-Fd~Iv~sddv~ 269 (381)
T PLN02575 216 RLRTGSQEFVNVLMNYKIPMALVSTRPRK--TLENAIGSIGIRGF-FSVIVAAEDVY 269 (381)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHcCCHHH-ceEEEecCcCC
Confidence 46899999999999999999999998853 35678899999988 79999998753
No 23
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=98.76 E-value=2.7e-08 Score=81.62 Aligned_cols=98 Identities=16% Similarity=0.139 Sum_probs=65.4
Q ss_pred HHhcccCccEEEEeccccccCC--CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564 23 HIAETRRFKAWLLDQFGVLHDG--KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (251)
Q Consensus 23 ~~~~~~~~~~~l~D~DGvL~~g--~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~ 100 (251)
+++....++++++|+||||+.. ..++||+.++|++|+++|++++++||++.. ......++.+|+... +...-....
T Consensus 18 ~~~~~~~v~~vv~D~Dgtl~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~-~~~~~~~~~~gl~~~-~~~~KP~p~ 95 (170)
T TIGR01668 18 DLLKKVGIKGVVLDKDNTLVYPDHNEAYPALRDWIEELKAAGRKLLIVSNNAGE-QRAKAVEKALGIPVL-PHAVKPPGC 95 (170)
T ss_pred HHHHHCCCCEEEEecCCccccCCCCCcChhHHHHHHHHHHcCCEEEEEeCCchH-HHHHHHHHHcCCEEE-cCCCCCChH
Confidence 4444457899999999999954 468999999999999999999999998731 112234466777643 222333444
Q ss_pred hHHHHHhccCchhhhhcCCeEEEeccC
Q 025564 101 LTHQYLLRRDDAWFAALGRSCIHMTWS 127 (251)
Q Consensus 101 ~~~~~L~~~~~~~~~~~g~~~~~~g~~ 127 (251)
.....+++.+.+ ...++++|..
T Consensus 96 ~~~~~l~~~~~~-----~~~~l~IGDs 117 (170)
T TIGR01668 96 AFRRAHPEMGLT-----SEQVAVVGDR 117 (170)
T ss_pred HHHHHHHHcCCC-----HHHEEEECCc
Confidence 445555554432 1456666643
No 24
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=98.76 E-value=1.7e-08 Score=88.34 Aligned_cols=54 Identities=17% Similarity=0.304 Sum_probs=45.9
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT 102 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~ 102 (251)
.++||+.++|+.|+++|++++++||+++. .+...|+++|+..+ |+.|++++++.
T Consensus 109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~--~~~~~l~~~gl~~~-Fd~ii~~~d~~ 162 (260)
T PLN03243 109 RLRPGSREFVQALKKHEIPIAVASTRPRR--YLERAIEAVGMEGF-FSVVLAAEDVY 162 (260)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCcCHH--HHHHHHHHcCCHhh-CcEEEecccCC
Confidence 36899999999999999999999998753 35577889999988 79999988653
No 25
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.76 E-value=1.3e-08 Score=77.94 Aligned_cols=69 Identities=35% Similarity=0.508 Sum_probs=57.6
Q ss_pred EEEEeccccccCCC---------ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564 32 AWLLDQFGVLHDGK---------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT 102 (251)
Q Consensus 32 ~~l~D~DGvL~~g~---------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~ 102 (251)
.++||+||||+... .++|++.++|++|+++|++++++||+.+ ..+...++.+|+... ++.++++....
T Consensus 1 ~~vfD~D~tl~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~--~~~~~~~~~~~~~~~-~~~i~~~~~~~ 77 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAEIEELELYPGVKEALKELKEKGIKLALATNKSR--REVLELLEELGLDDY-FDPVITSNGAA 77 (139)
T ss_pred CeEEccCCceEccCccccccccCCcCcCHHHHHHHHHHCCCeEEEEeCchH--HHHHHHHHHcCCchh-hhheeccchhh
Confidence 37999999999988 7899999999999999999999999873 336677888898766 57777777554
Q ss_pred H
Q 025564 103 H 103 (251)
Q Consensus 103 ~ 103 (251)
.
T Consensus 78 ~ 78 (139)
T cd01427 78 I 78 (139)
T ss_pred h
Confidence 4
No 26
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=98.75 E-value=3.4e-08 Score=83.93 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=44.5
Q ss_pred CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (251)
Q Consensus 45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~ 100 (251)
..++||+.++|+.|+++|++++++||+++. .+...++++|+... |+.++++++
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~--~~~~~l~~~~l~~~-f~~~~~~~~ 143 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLH--MLEAVLTMFDLRDY-FDALASAEK 143 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHH--HHHHHHHhCcchhc-ccEEEEccc
Confidence 357899999999999999999999998753 25567888999988 788888765
No 27
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=98.73 E-value=2.9e-08 Score=81.20 Aligned_cols=69 Identities=22% Similarity=0.200 Sum_probs=53.1
Q ss_pred cCccEEEEeccccccCCCc-------------cCccHHHHHHHHHHCCCeEEEEeCCCCCc----------hhHHHHhHh
Q 025564 28 RRFKAWLLDQFGVLHDGKK-------------PYPGAISTLEMLATTGAKMVVISNSSRRA----------STTIDKLKS 84 (251)
Q Consensus 28 ~~~~~~l~D~DGvL~~g~~-------------~~pGa~e~L~~L~~~G~~v~ivTN~s~~~----------~~~~~~L~~ 84 (251)
|+.+.++||+||||+.... ++||+.++|++|+++|++++++||++... ..+...|++
T Consensus 11 ~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~ 90 (166)
T TIGR01664 11 PQSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEK 90 (166)
T ss_pred CcCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHH
Confidence 4678999999999997532 46999999999999999999999987421 124566788
Q ss_pred CCCCCccccceeech
Q 025564 85 LGFDPSLFAGAITSG 99 (251)
Q Consensus 85 ~Gl~~~~~~~Iits~ 99 (251)
+|+.. ..+++++
T Consensus 91 ~gl~~---~~ii~~~ 102 (166)
T TIGR01664 91 LKVPI---QVLAATH 102 (166)
T ss_pred cCCCE---EEEEecC
Confidence 99853 3455554
No 28
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.71 E-value=2.2e-08 Score=82.50 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=56.0
Q ss_pred ccEEEEeccccccCC---------------------------CccCccHHHHHHHHHHCCCeEEEEeCC-CCCchhHHHH
Q 025564 30 FKAWLLDQFGVLHDG---------------------------KKPYPGAISTLEMLATTGAKMVVISNS-SRRASTTIDK 81 (251)
Q Consensus 30 ~~~~l~D~DGvL~~g---------------------------~~~~pGa~e~L~~L~~~G~~v~ivTN~-s~~~~~~~~~ 81 (251)
.+.++||+|+|+|+. .+++||+.++|+.|+++|++++++||+ ... .....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~--~~~~~ 79 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPE--WAYEI 79 (174)
T ss_pred CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChH--HHHHH
Confidence 478999999999972 257899999999999999999999998 433 24567
Q ss_pred hHhCCCC---------Cccccceeechh
Q 025564 82 LKSLGFD---------PSLFAGAITSGE 100 (251)
Q Consensus 82 L~~~Gl~---------~~~~~~Iits~~ 100 (251)
|+.+|+. .. |+.++++..
T Consensus 80 L~~~~l~~~~~~~~~~~~-Fd~iv~~~~ 106 (174)
T TIGR01685 80 LGTFEITYAGKTVPMHSL-FDDRIEIYK 106 (174)
T ss_pred HHhCCcCCCCCcccHHHh-ceeeeeccC
Confidence 7889987 77 688888765
No 29
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=98.71 E-value=2.8e-08 Score=86.26 Aligned_cols=54 Identities=22% Similarity=0.330 Sum_probs=46.1
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT 102 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~ 102 (251)
.++||+.++|++|+++|++++|+||+++. .+...|+++|+..+ |+.+++++++.
T Consensus 108 ~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~--~~~~~l~~~gl~~~-Fd~iv~~~~~~ 161 (248)
T PLN02770 108 KPLNGLYKLKKWIEDRGLKRAAVTNAPRE--NAELMISLLGLSDF-FQAVIIGSECE 161 (248)
T ss_pred CcCccHHHHHHHHHHcCCeEEEEeCCCHH--HHHHHHHHcCChhh-CcEEEecCcCC
Confidence 35789999999999999999999998853 35678899999988 79999998764
No 30
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=98.70 E-value=3.1e-08 Score=79.96 Aligned_cols=100 Identities=21% Similarity=0.222 Sum_probs=64.8
Q ss_pred ccEEEEeccccccCCCc-------------cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCcccccee
Q 025564 30 FKAWLLDQFGVLHDGKK-------------PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAI 96 (251)
Q Consensus 30 ~~~~l~D~DGvL~~g~~-------------~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Ii 96 (251)
++.++||+||||.++.. ..++ .+|++|+++|++++++||+++.. ....++++|+... |+...
T Consensus 1 ~~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~--~~i~~Lk~~G~~i~IvTn~~~~~--~~~~l~~~gi~~~-~~~~~ 75 (154)
T TIGR01670 1 IRLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDG--YGIRCALKSGIEVAIITGRKAKL--VEDRCKTLGITHL-YQGQS 75 (154)
T ss_pred CeEEEEeCceeEEcCeEEECCCCcEEEEEechhH--HHHHHHHHCCCEEEEEECCCCHH--HHHHHHHcCCCEE-Eeccc
Confidence 57899999999998522 1222 37999999999999999987543 4577889999876 45544
Q ss_pred echhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCc
Q 025564 97 TSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGL 139 (251)
Q Consensus 97 ts~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~ 139 (251)
...+....++.+.+.+ ..+++.+|.+......++..|+
T Consensus 76 ~k~~~~~~~~~~~~~~-----~~~~~~vGDs~~D~~~~~~ag~ 113 (154)
T TIGR01670 76 NKLIAFSDILEKLALA-----PENVAYIGDDLIDWPVMEKVGL 113 (154)
T ss_pred chHHHHHHHHHHcCCC-----HHHEEEECCCHHHHHHHHHCCC
Confidence 4445555555544432 1356666654332233444444
No 31
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.68 E-value=5.2e-08 Score=77.88 Aligned_cols=58 Identities=31% Similarity=0.504 Sum_probs=47.9
Q ss_pred cEEEEeccccccCCCc-----------cCccHHHHHHHHHHCCCeEEEEeCCCCCc-------------hhHHHHhHhCC
Q 025564 31 KAWLLDQFGVLHDGKK-----------PYPGAISTLEMLATTGAKMVVISNSSRRA-------------STTIDKLKSLG 86 (251)
Q Consensus 31 ~~~l~D~DGvL~~g~~-----------~~pGa~e~L~~L~~~G~~v~ivTN~s~~~-------------~~~~~~L~~~G 86 (251)
++++||+||||..+.. ++||+.++|+.|+++|++++++||+++.. +.+...|+++|
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLG 80 (147)
T ss_pred CeEEEeCCCceeccCCcccCCCHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCC
Confidence 4799999999998774 69999999999999999999999987410 23445677888
Q ss_pred CC
Q 025564 87 FD 88 (251)
Q Consensus 87 l~ 88 (251)
+.
T Consensus 81 l~ 82 (147)
T TIGR01656 81 VA 82 (147)
T ss_pred Cc
Confidence 86
No 32
>PRK06769 hypothetical protein; Validated
Probab=98.68 E-value=4.4e-08 Score=80.56 Aligned_cols=62 Identities=21% Similarity=0.360 Sum_probs=49.0
Q ss_pred CccEEEEeccccccC--------CCccCccHHHHHHHHHHCCCeEEEEeCCCCC-----c-hhHHHHhHhCCCCCc
Q 025564 29 RFKAWLLDQFGVLHD--------GKKPYPGAISTLEMLATTGAKMVVISNSSRR-----A-STTIDKLKSLGFDPS 90 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~--------g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~-----~-~~~~~~L~~~Gl~~~ 90 (251)
.|+++++|.||||-. ...++||+.++|++|+++|++++++||++.. . ..+...++.+|++..
T Consensus 3 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~ 78 (173)
T PRK06769 3 NIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDI 78 (173)
T ss_pred CCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEE
Confidence 799999999999932 2357999999999999999999999998631 1 124456778888654
No 33
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=98.66 E-value=3.2e-08 Score=81.22 Aligned_cols=105 Identities=18% Similarity=0.151 Sum_probs=70.8
Q ss_pred CccEEEEeccccccCCCccCccH-----------HHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceee
Q 025564 29 RFKAWLLDQFGVLHDGKKPYPGA-----------ISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT 97 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~~~~pGa-----------~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iit 97 (251)
.+++++||+||||.+|.-.+..- ...++.|+++|++++++||++... ....++++|+... |+.+-.
T Consensus 6 ~i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~D~~~~~~L~~~Gi~laIiT~k~~~~--~~~~l~~lgi~~~-f~~~kp 82 (169)
T TIGR02726 6 NIKLVILDVDGVMTDGRIVINDEGIESRNFDIKDGMGVIVLQLCGIDVAIITSKKSGA--VRHRAEELKIKRF-HEGIKK 82 (169)
T ss_pred cCeEEEEeCceeeECCeEEEcCCCcEEEEEecchHHHHHHHHHCCCEEEEEECCCcHH--HHHHHHHCCCcEE-EecCCC
Confidence 68999999999999986444222 237899999999999999987543 5678899999876 565544
Q ss_pred chhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCcee
Q 025564 98 SGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKV 141 (251)
Q Consensus 98 s~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~ 141 (251)
..+.....+++.+.. ...++.+|.+......++..|+.+
T Consensus 83 kp~~~~~~~~~l~~~-----~~ev~~iGD~~nDi~~~~~ag~~~ 121 (169)
T TIGR02726 83 KTEPYAQMLEEMNIS-----DAEVCYVGDDLVDLSMMKRVGLAV 121 (169)
T ss_pred CHHHHHHHHHHcCcC-----HHHEEEECCCHHHHHHHHHCCCeE
Confidence 445555555555432 135666675433333455555543
No 34
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.62 E-value=8.3e-08 Score=82.22 Aligned_cols=53 Identities=21% Similarity=0.269 Sum_probs=42.8
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~ 101 (251)
.++||+.++|++|+++|++++++||+++. .....++++|+... |+.++++.+.
T Consensus 95 ~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~--~~~~~l~~~~l~~~-f~~i~~~~~~ 147 (229)
T PRK13226 95 QLFDGVEGMLQRLECAGCVWGIVTNKPEY--LARLILPQLGWEQR-CAVLIGGDTL 147 (229)
T ss_pred eeCCCHHHHHHHHHHCCCeEEEECCCCHH--HHHHHHHHcCchhc-ccEEEecCcC
Confidence 45899999999999999999999998753 24467888999887 6777776643
No 35
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=98.61 E-value=2e-07 Score=76.87 Aligned_cols=45 Identities=36% Similarity=0.562 Sum_probs=39.7
Q ss_pred CccEEEEeccccccCCC----------ccCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564 29 RFKAWLLDQFGVLHDGK----------KPYPGAISTLEMLATTGAKMVVISNSSR 73 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~----------~~~pGa~e~L~~L~~~G~~v~ivTN~s~ 73 (251)
.+|+++||.||||.-.. .++||+.++|++|+++|++++++||+++
T Consensus 2 ~~~~~~~d~~~t~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~ 56 (181)
T PRK08942 2 SMKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQSG 56 (181)
T ss_pred CccEEEEECCCCcccCCccccCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 57999999999996432 5799999999999999999999999863
No 36
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.60 E-value=1.1e-07 Score=83.83 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=43.4
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~ 100 (251)
+++||+.++|+.|+++|++++++||+++. .+...|+++|+..+ |+.++++..
T Consensus 142 ~l~pg~~e~L~~L~~~gi~laIvSn~~~~--~~~~~L~~~gl~~~-F~~vi~~~~ 193 (273)
T PRK13225 142 QLFPGVADLLAQLRSRSLCLGILSSNSRQ--NIEAFLQRQGLRSL-FSVVQAGTP 193 (273)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHcCChhh-eEEEEecCC
Confidence 45899999999999999999999998753 35577899999887 687776654
No 37
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.59 E-value=1e-07 Score=79.87 Aligned_cols=56 Identities=25% Similarity=0.363 Sum_probs=46.9
Q ss_pred CCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (251)
Q Consensus 43 ~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~ 101 (251)
....++||+.++|++|+++|++++++||+++.. +...++++|+... |+.++++++.
T Consensus 72 ~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~--~~~~l~~~~l~~~-f~~i~~~~~~ 127 (205)
T TIGR01454 72 GEVEVFPGVPELLAELRADGVGTAIATGKSGPR--ARSLLEALGLLPL-FDHVIGSDEV 127 (205)
T ss_pred cccccCCCHHHHHHHHHHCCCeEEEEeCCchHH--HHHHHHHcCChhh-eeeEEecCcC
Confidence 346789999999999999999999999987533 5577899999887 6888887653
No 38
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.57 E-value=2.1e-07 Score=80.40 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=52.1
Q ss_pred EEEEeccccccCCCc-----------------------------------cCccHHHHHHHHHHCCCeEEEEeCCCCC-c
Q 025564 32 AWLLDQFGVLHDGKK-----------------------------------PYPGAISTLEMLATTGAKMVVISNSSRR-A 75 (251)
Q Consensus 32 ~~l~D~DGvL~~g~~-----------------------------------~~pGa~e~L~~L~~~G~~v~ivTN~s~~-~ 75 (251)
+|+||+||||.+... +.+++.++|++|+++|++++|+||+... .
T Consensus 65 aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~ 144 (237)
T TIGR01672 65 AVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKT 144 (237)
T ss_pred EEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcC
Confidence 999999999987433 1233999999999999999999998532 3
Q ss_pred hh-HHHHhHhCCCCCccccceeechhh
Q 025564 76 ST-TIDKLKSLGFDPSLFAGAITSGEL 101 (251)
Q Consensus 76 ~~-~~~~L~~~Gl~~~~~~~Iits~~~ 101 (251)
+. ....++++|++.. |+.+++++..
T Consensus 145 ~~~a~~ll~~lGi~~~-f~~i~~~d~~ 170 (237)
T TIGR01672 145 DTVSKTLAKNFHIPAM-NPVIFAGDKP 170 (237)
T ss_pred HHHHHHHHHHhCCchh-eeEEECCCCC
Confidence 33 3445567999987 5777776653
No 39
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.56 E-value=2e-07 Score=78.96 Aligned_cols=52 Identities=27% Similarity=0.429 Sum_probs=42.6
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~ 100 (251)
.++||+.++|+.|+++|++++++||+... .....++++|+... |+.+++++.
T Consensus 93 ~~~~g~~~~l~~l~~~g~~~~i~S~~~~~--~~~~~l~~~~l~~~-f~~~~~~~~ 144 (226)
T PRK13222 93 RLYPGVKETLAALKAAGYPLAVVTNKPTP--FVAPLLEALGIADY-FSVVIGGDS 144 (226)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHcCCccC-ccEEEcCCC
Confidence 47899999999999999999999998743 34577888999877 688777654
No 40
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=98.56 E-value=1.7e-07 Score=79.88 Aligned_cols=50 Identities=26% Similarity=0.413 Sum_probs=43.2
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeec
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS 98 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits 98 (251)
.++||+.++|+.|+++|++++|+||+++.. ....|+++|+..+ |+.+++.
T Consensus 89 ~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~--~~~~l~~~gl~~~-F~~i~g~ 138 (220)
T COG0546 89 RLFPGVKELLAALKSAGYKLGIVTNKPERE--LDILLKALGLADY-FDVIVGG 138 (220)
T ss_pred ccCCCHHHHHHHHHhCCCeEEEEeCCcHHH--HHHHHHHhCCccc-cceEEcC
Confidence 479999999999999999999999988543 5577888999998 7888883
No 41
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=98.55 E-value=2.3e-07 Score=76.26 Aligned_cols=43 Identities=30% Similarity=0.390 Sum_probs=38.4
Q ss_pred cEEEEeccccccCC---------CccCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564 31 KAWLLDQFGVLHDG---------KKPYPGAISTLEMLATTGAKMVVISNSSR 73 (251)
Q Consensus 31 ~~~l~D~DGvL~~g---------~~~~pGa~e~L~~L~~~G~~v~ivTN~s~ 73 (251)
++++||.||||..+ ..++||+.++|++|+++|++++++||++.
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYVHEIDNFEFIDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred CEEEEeCCCCEeCCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 68999999999943 24689999999999999999999999984
No 42
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=98.55 E-value=1.3e-07 Score=79.88 Aligned_cols=55 Identities=31% Similarity=0.423 Sum_probs=45.9
Q ss_pred CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT 102 (251)
Q Consensus 45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~ 102 (251)
..++||+.++|++|+++|++++++||+++.. ....++++|+... |+.++++++..
T Consensus 93 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~--~~~~l~~~~l~~~-f~~i~~~~~~~ 147 (221)
T TIGR02253 93 LRVYPGVRDTLMELRESGYRLGIITDGLPVK--QWEKLERLGVRDF-FDAVITSEEEG 147 (221)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEeCCchHH--HHHHHHhCChHHh-ccEEEEeccCC
Confidence 3678999999999999999999999987432 4577899999988 78899887644
No 43
>PLN02940 riboflavin kinase
Probab=98.53 E-value=1.8e-07 Score=86.29 Aligned_cols=54 Identities=30% Similarity=0.446 Sum_probs=44.4
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhH-hCCCCCccccceeechhhH
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK-SLGFDPSLFAGAITSGELT 102 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~-~~Gl~~~~~~~Iits~~~~ 102 (251)
.++||+.++|++|+++|++++++||+++.. +...|+ .+|+... |+.+++++++.
T Consensus 93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~--~~~~l~~~~gl~~~-Fd~ii~~d~v~ 147 (382)
T PLN02940 93 KALPGANRLIKHLKSHGVPMALASNSPRAN--IEAKISCHQGWKES-FSVIVGGDEVE 147 (382)
T ss_pred CCCcCHHHHHHHHHHCCCcEEEEeCCcHHH--HHHHHHhccChHhh-CCEEEehhhcC
Confidence 468999999999999999999999987533 445676 6899888 79999988653
No 44
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=98.52 E-value=2.5e-07 Score=75.83 Aligned_cols=53 Identities=25% Similarity=0.337 Sum_probs=44.2
Q ss_pred CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (251)
Q Consensus 44 g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~ 101 (251)
...++||+.++|+.|+++|++++++||+ ......|+++|+... |+.++++++.
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~----~~~~~~l~~~~l~~~-f~~v~~~~~~ 138 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSS----KNADRILAKLGLTDY-FDAIVDADEV 138 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCc----hhHHHHHHHcChHHH-CCEeeehhhC
Confidence 3578999999999999999999999997 225577889999888 6888887643
No 45
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=98.52 E-value=2.1e-07 Score=78.74 Aligned_cols=54 Identities=19% Similarity=0.370 Sum_probs=45.8
Q ss_pred CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC--Cccccceeechhh
Q 025564 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD--PSLFAGAITSGEL 101 (251)
Q Consensus 45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~--~~~~~~Iits~~~ 101 (251)
.+++||+.++|+.|+++|++++++||+++.. +...|+++|+. .. |+.++++++.
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~--~~~~l~~~~l~~~~~-f~~i~~~~~~ 141 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDT--AERLLEKLGWTVGDD-VDAVVCPSDV 141 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHH--HHHHHHHhhhhhhcc-CCEEEcCCcC
Confidence 3689999999999999999999999988533 55788889998 66 6889898764
No 46
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.50 E-value=2.6e-07 Score=82.00 Aligned_cols=77 Identities=21% Similarity=0.260 Sum_probs=59.1
Q ss_pred ccEEEEeccccccC-------------CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC-ccccce
Q 025564 30 FKAWLLDQFGVLHD-------------GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP-SLFAGA 95 (251)
Q Consensus 30 ~~~~l~D~DGvL~~-------------g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~-~~~~~I 95 (251)
.+.+++|+||||.. ...++||+.++|+.|+++|++++++||++... ....++.+|+.. + |+.+
T Consensus 158 ~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~--~~~~l~~l~~~~~~-f~~i 234 (300)
T PHA02530 158 PKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVC--EEDTVEWLRQTDIW-FDDL 234 (300)
T ss_pred CCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhh--HHHHHHHHHHcCCc-hhhh
Confidence 57899999999997 45789999999999999999999999988533 334556666664 4 5777
Q ss_pred eechhhHHHHHhccC
Q 025564 96 ITSGELTHQYLLRRD 110 (251)
Q Consensus 96 its~~~~~~~L~~~~ 110 (251)
+... ....|++...
T Consensus 235 ~~~~-~~~~~~~~~~ 248 (300)
T PHA02530 235 IGRP-PDMHFQREQG 248 (300)
T ss_pred hCCc-chhhhcccCC
Confidence 6666 4555776543
No 47
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=98.49 E-value=3.2e-07 Score=75.61 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=39.4
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~ 101 (251)
.++|| .++|+.|++. ++++++||+++.. +...|+++|+..+ |+.|++++++
T Consensus 88 ~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~--~~~~l~~~~l~~~-fd~i~~~~~~ 138 (188)
T PRK10725 88 EPLPL-IEVVKAWHGR-RPMAVGTGSESAI--AEALLAHLGLRRY-FDAVVAADDV 138 (188)
T ss_pred CCccH-HHHHHHHHhC-CCEEEEcCCchHH--HHHHHHhCCcHhH-ceEEEehhhc
Confidence 34554 4778888765 8999999987533 5578999999988 7999998865
No 48
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.47 E-value=5.4e-07 Score=76.17 Aligned_cols=66 Identities=23% Similarity=0.195 Sum_probs=54.6
Q ss_pred hHHHhcccCccEEEEeccccccC-------------------------------------------------------CC
Q 025564 21 LRHIAETRRFKAWLLDQFGVLHD-------------------------------------------------------GK 45 (251)
Q Consensus 21 ~~~~~~~~~~~~~l~D~DGvL~~-------------------------------------------------------g~ 45 (251)
+++++. .+++++||+||||++ ..
T Consensus 7 ~~~~~~--~~k~iiFD~DGTL~~~~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (219)
T TIGR00338 7 LSPLLR--SKKLVVFDMDSTLINAETIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLKGLPVELLKEVRENL 84 (219)
T ss_pred chhhhc--cCCEEEEeCcccCCCchHHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCHHHHHHHHhcC
Confidence 677788 899999999999997 12
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
.++||+.++|+.|+++|++++++||+... .....++++|+...
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~~--~~~~~l~~~~i~~~ 127 (219)
T TIGR00338 85 PLTEGAEELVKTLKEKGYKVAVISGGFDL--FAEHVKDKLGLDAA 127 (219)
T ss_pred CcCCCHHHHHHHHHHCCCEEEEECCCcHH--HHHHHHHHcCCCce
Confidence 57899999999999999999999998742 24466777888765
No 49
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.46 E-value=2.3e-07 Score=77.01 Aligned_cols=109 Identities=18% Similarity=0.190 Sum_probs=67.2
Q ss_pred hHHHhcccCccEEEEeccccccCC-------Cc-cCccHH---HHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 21 LRHIAETRRFKAWLLDQFGVLHDG-------KK-PYPGAI---STLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 21 ~~~~~~~~~~~~~l~D~DGvL~~g-------~~-~~pGa~---e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
+.+... +++.|+||+||||.++ .+ ..+-.. ..++.|+++|++++|+||++.. .....++++|+..
T Consensus 14 ~~~~~~--~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~~~i~~L~~~Gi~v~I~T~~~~~--~v~~~l~~lgl~~ 89 (183)
T PRK09484 14 VMAKAE--NIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDGYGIRCLLTSGIEVAIITGRKSK--LVEDRMTTLGITH 89 (183)
T ss_pred HHHHhh--CceEEEEcCCeeeecCEEEEcCCCCEEEEEeccchHHHHHHHHCCCEEEEEeCCCcH--HHHHHHHHcCCce
Confidence 334455 7999999999999986 32 222222 5789999999999999998643 3556788899876
Q ss_pred ccccceeechhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCc
Q 025564 90 SLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGL 139 (251)
Q Consensus 90 ~~~~~Iits~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~ 139 (251)
. |...-........++++.+.. ...++.+|.+......++..|+
T Consensus 90 ~-f~g~~~k~~~l~~~~~~~gl~-----~~ev~~VGDs~~D~~~a~~aG~ 133 (183)
T PRK09484 90 L-YQGQSNKLIAFSDLLEKLAIA-----PEQVAYIGDDLIDWPVMEKVGL 133 (183)
T ss_pred e-ecCCCcHHHHHHHHHHHhCCC-----HHHEEEECCCHHHHHHHHHCCC
Confidence 5 442222223334444444332 1346666654333334555555
No 50
>PRK09449 dUMP phosphatase; Provisional
Probab=98.45 E-value=2.7e-07 Score=78.32 Aligned_cols=53 Identities=26% Similarity=0.376 Sum_probs=43.6
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT 102 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~ 102 (251)
.++||+.++|++|+ +|++++++||+++. .....|+++|+... |+.++++++..
T Consensus 95 ~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~--~~~~~l~~~~l~~~-fd~v~~~~~~~ 147 (224)
T PRK09449 95 TPLPGAVELLNALR-GKVKMGIITNGFTE--LQQVRLERTGLRDY-FDLLVISEQVG 147 (224)
T ss_pred ccCccHHHHHHHHH-hCCeEEEEeCCcHH--HHHHHHHhCChHHH-cCEEEEECccC
Confidence 46899999999999 68999999998743 34567899999988 79999887654
No 51
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=98.44 E-value=3.6e-07 Score=79.99 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=41.0
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~ 101 (251)
.++||+.++|+.|+++|++++|+||+++. .+...|+.+|+....++.|++++++
T Consensus 101 ~~~pg~~elL~~L~~~g~~l~I~T~~~~~--~~~~~l~~~~l~~~~~d~i~~~~~~ 154 (267)
T PRK13478 101 TPIPGVLEVIAALRARGIKIGSTTGYTRE--MMDVVVPLAAAQGYRPDHVVTTDDV 154 (267)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEcCCcHH--HHHHHHHHHhhcCCCceEEEcCCcC
Confidence 35789999999999999999999998753 2446677777765423677777654
No 52
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=98.43 E-value=6e-07 Score=73.09 Aligned_cols=64 Identities=23% Similarity=0.359 Sum_probs=49.4
Q ss_pred cEEEEeccccccCCC------------ccCccHHHHHHHHHHCCCeEEEEeCCCC---C----------chhHHHHhHhC
Q 025564 31 KAWLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSSR---R----------ASTTIDKLKSL 85 (251)
Q Consensus 31 ~~~l~D~DGvL~~g~------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~---~----------~~~~~~~L~~~ 85 (251)
++++||.||||+... .++||+.++|++|+++|++++++||++. . ...+.+.|+++
T Consensus 2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQ 81 (161)
T ss_pred CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHC
Confidence 689999999999832 4789999999999999999999999741 0 11244567888
Q ss_pred CCCCccccceee
Q 025564 86 GFDPSLFAGAIT 97 (251)
Q Consensus 86 Gl~~~~~~~Iit 97 (251)
|+. |+.++.
T Consensus 82 gl~---fd~ii~ 90 (161)
T TIGR01261 82 GII---FDDVLI 90 (161)
T ss_pred CCc---eeEEEE
Confidence 986 455543
No 53
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=98.42 E-value=4.8e-07 Score=85.37 Aligned_cols=53 Identities=9% Similarity=0.155 Sum_probs=45.3
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~ 101 (251)
+++||+.++|++|+++|++++++||+++.. ....|+++|+..+ |+.+++++++
T Consensus 330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~--~~~~l~~~~l~~~-f~~i~~~d~v 382 (459)
T PRK06698 330 ALYPNVKEIFTYIKENNCSIYIASNGLTEY--LRAIVSYYDLDQW-VTETFSIEQI 382 (459)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCchHH--HHHHHHHCCcHhh-cceeEecCCC
Confidence 458999999999999999999999987533 5678899999988 7899888765
No 54
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.40 E-value=6.9e-07 Score=78.49 Aligned_cols=60 Identities=20% Similarity=0.178 Sum_probs=50.7
Q ss_pred cCccEEEEeccccccC-CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 28 RRFKAWLLDQFGVLHD-GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 28 ~~~~~~l~D~DGvL~~-g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
|.++.+++|+||||.+ +....+++.++|++|+++|++++++||.+. ..+...++++|+..
T Consensus 2 ~~~kli~~DlDGTLl~~~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~--~~~~~~~~~l~l~~ 62 (273)
T PRK00192 2 MMKLLVFTDLDGTLLDHHTYSYEPAKPALKALKEKGIPVIPCTSKTA--AEVEVLRKELGLED 62 (273)
T ss_pred CcceEEEEcCcccCcCCCCcCcHHHHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHHHcCCCC
Confidence 4689999999999998 556789999999999999999999998764 33556778888764
No 55
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.36 E-value=1.4e-06 Score=76.44 Aligned_cols=71 Identities=27% Similarity=0.347 Sum_probs=56.5
Q ss_pred CccEEEEeccccccC---------------------------CCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHH
Q 025564 29 RFKAWLLDQFGVLHD---------------------------GKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTID 80 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~---------------------------g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~ 80 (251)
+..+|+||+|+|+.+ ...++||+.++|+.|+++|++++|+||++. ..+...+
T Consensus 74 kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~ 153 (266)
T TIGR01533 74 KKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLK 153 (266)
T ss_pred CCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHH
Confidence 556999999999963 125689999999999999999999999885 3445668
Q ss_pred HhHhCCCCCccccceeech
Q 025564 81 KLKSLGFDPSLFAGAITSG 99 (251)
Q Consensus 81 ~L~~~Gl~~~~~~~Iits~ 99 (251)
.|+++|++...++.+++..
T Consensus 154 ~Lkk~Gi~~~~~d~lllr~ 172 (266)
T TIGR01533 154 NLKRFGFPQADEEHLLLKK 172 (266)
T ss_pred HHHHcCcCCCCcceEEeCC
Confidence 8999999864236676654
No 56
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.35 E-value=8.2e-07 Score=79.97 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=55.1
Q ss_pred CccEEEEeccccccCCC------------ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHh----CCCCCccc
Q 025564 29 RFKAWLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS----LGFDPSLF 92 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~----~Gl~~~~~ 92 (251)
.+|++++|+|+|||.|. .++||+.++|+.|+++|++++++|||... .....|++ +|+..+ |
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~--~a~~~l~~~~~~~~~~~~-f 78 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDED--DAKKVFERRKDFILQAED-F 78 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHH--HHHHHHHhCccccCcHHH-e
Confidence 36899999999999874 46799999999999999999999999753 35567787 788776 5
Q ss_pred cceeech
Q 025564 93 AGAITSG 99 (251)
Q Consensus 93 ~~Iits~ 99 (251)
..+..+-
T Consensus 79 ~~~~~~~ 85 (320)
T TIGR01686 79 DARSINW 85 (320)
T ss_pred eEEEEec
Confidence 6655543
No 57
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=98.35 E-value=2.6e-06 Score=68.87 Aligned_cols=86 Identities=22% Similarity=0.223 Sum_probs=63.6
Q ss_pred HHhcccCccEEEEecccccc--CCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564 23 HIAETRRFKAWLLDQFGVLH--DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (251)
Q Consensus 23 ~~~~~~~~~~~l~D~DGvL~--~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~ 100 (251)
+.+....++++++|+|-||. +....-|.+.+.++.++++|.++.++|||+.++ +....+++|++-. +..--....
T Consensus 21 ~~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~R--V~~~~~~l~v~fi-~~A~KP~~~ 97 (175)
T COG2179 21 DILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESR--VARAAEKLGVPFI-YRAKKPFGR 97 (175)
T ss_pred HHHHHcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHH--HHhhhhhcCCcee-ecccCccHH
Confidence 44444689999999999995 666778999999999999999999999988544 5556677888743 233334445
Q ss_pred hHHHHHhccCc
Q 025564 101 LTHQYLLRRDD 111 (251)
Q Consensus 101 ~~~~~L~~~~~ 111 (251)
.....|++.+.
T Consensus 98 ~fr~Al~~m~l 108 (175)
T COG2179 98 AFRRALKEMNL 108 (175)
T ss_pred HHHHHHHHcCC
Confidence 55566665544
No 58
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=98.35 E-value=1.9e-06 Score=67.33 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=36.5
Q ss_pred cEEEEeccccccCCC-------ccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564 31 KAWLLDQFGVLHDGK-------KPYPGAISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 31 ~~~l~D~DGvL~~g~-------~~~pGa~e~L~~L~~~G~~v~ivTN~s 72 (251)
++|+||+||||.+.. .+.+++.++|++|+++|+.++++|..+
T Consensus 2 K~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~ 50 (126)
T TIGR01689 2 KRLVMDLDNTITLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRN 50 (126)
T ss_pred CEEEEeCCCCcccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 689999999999743 256799999999999999999999765
No 59
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.35 E-value=1.2e-06 Score=74.62 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=47.9
Q ss_pred cCccEEEEeccccccCCCcc-CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 28 RRFKAWLLDQFGVLHDGKKP-YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 28 ~~~~~~l~D~DGvL~~g~~~-~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
|.++.+++|+||||.+..+. -|...++|++|+++|++++++|+.+.. .+...++.+|++
T Consensus 1 m~~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~--~~~~~~~~l~~~ 60 (230)
T PRK01158 1 MKIKAIAIDIDGTITDKDRRLSLKAVEAIRKAEKLGIPVILATGNVLC--FARAAAKLIGTS 60 (230)
T ss_pred CceeEEEEecCCCcCCCCCccCHHHHHHHHHHHHCCCEEEEEcCCchH--HHHHHHHHhCCC
Confidence 46899999999999987764 479999999999999999999986632 344455667775
No 60
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.34 E-value=1.7e-06 Score=71.77 Aligned_cols=44 Identities=16% Similarity=0.014 Sum_probs=35.4
Q ss_pred CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
..++||+.++|+.|+++|++++|+||+.+. .+...++++|+...
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~--~~~~~l~~~g~~~~ 122 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMC--LAKKVAEKLNPDYV 122 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHH--HHHHHHHHhCCCeE
Confidence 356899999999999999999999998743 24466778888754
No 61
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.33 E-value=1.2e-06 Score=74.98 Aligned_cols=56 Identities=25% Similarity=0.231 Sum_probs=47.4
Q ss_pred EEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 32 AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 32 ~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
.++||+||||++.....+++.++|++|+++|++++++|+.+. .++...++++|+..
T Consensus 1 li~~DlDGTLl~~~~~~~~~~~ai~~l~~~G~~~vi~TgR~~--~~~~~~~~~lg~~~ 56 (225)
T TIGR02461 1 VIFTDLDGTLLPPGYEPGPAREALEELKDLGFPIVFVSSKTR--AEQEYYREELGVEP 56 (225)
T ss_pred CEEEeCCCCCcCCCCCchHHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHHcCCCC
Confidence 378999999999878889999999999999999999997663 34666778888753
No 62
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.32 E-value=2.4e-06 Score=73.80 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=50.6
Q ss_pred EEEEeccccccCCC-----------------------------------ccCccHHHHHHHHHHCCCeEEEEeCCCCC-c
Q 025564 32 AWLLDQFGVLHDGK-----------------------------------KPYPGAISTLEMLATTGAKMVVISNSSRR-A 75 (251)
Q Consensus 32 ~~l~D~DGvL~~g~-----------------------------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~-~ 75 (251)
+|+||+|||+.+.. .++||+.++|++|+++|++++++||.+.. .
T Consensus 65 av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~ 144 (237)
T PRK11009 65 AVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKT 144 (237)
T ss_pred EEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCccc
Confidence 99999999999621 25677999999999999999999998632 3
Q ss_pred hhHHHHhH-hCCC--CCccccceeech
Q 025564 76 STTIDKLK-SLGF--DPSLFAGAITSG 99 (251)
Q Consensus 76 ~~~~~~L~-~~Gl--~~~~~~~Iits~ 99 (251)
+...+.|. .+|+ ... |..+++++
T Consensus 145 ~~t~~~Llk~~gip~~~~-f~vil~gd 170 (237)
T PRK11009 145 ETVSKTLADDFHIPADNM-NPVIFAGD 170 (237)
T ss_pred HHHHHHHHHHcCCCcccc-eeEEEcCC
Confidence 33445554 5999 555 56666655
No 63
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.29 E-value=1.9e-06 Score=75.16 Aligned_cols=59 Identities=20% Similarity=0.319 Sum_probs=48.3
Q ss_pred cCccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 28 ~~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
|.++.+++|+||||++..+ .-|...++|++|+++|++++++|..+. ..+...++.+|+.
T Consensus 1 M~~kli~~DlDGTLl~~~~~i~~~~~~ai~~~~~~G~~~~iaTGR~~--~~~~~~~~~l~~~ 60 (272)
T PRK10530 1 MTYRVIALDLDGTLLTPKKTILPESLEALARAREAGYKVIIVTGRHH--VAIHPFYQALALD 60 (272)
T ss_pred CCccEEEEeCCCceECCCCccCHHHHHHHHHHHHCCCEEEEEcCCCh--HHHHHHHHhcCCC
Confidence 5689999999999998765 668999999999999999999997663 2344556667765
No 64
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=98.28 E-value=1.7e-06 Score=73.31 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=37.5
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCcccc-ceeechh
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFA-GAITSGE 100 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~-~Iits~~ 100 (251)
.++||+.++|+.| +++++++||+++. .+...|+++|+... |+ .++++.+
T Consensus 88 ~~~~gv~~~L~~L---~~~~~ivTn~~~~--~~~~~l~~~~l~~~-F~~~v~~~~~ 137 (221)
T PRK10563 88 EPIAGANALLESI---TVPMCVVSNGPVS--KMQHSLGKTGMLHY-FPDKLFSGYD 137 (221)
T ss_pred CcCCCHHHHHHHc---CCCEEEEeCCcHH--HHHHHHHhcChHHh-CcceEeeHHh
Confidence 5678888888887 5999999998743 35578899999887 65 4666544
No 65
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=98.28 E-value=2e-06 Score=75.80 Aligned_cols=52 Identities=27% Similarity=0.385 Sum_probs=42.8
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~ 100 (251)
.++||+.++|+.|+++|++++++||++.. .+...|+++|+... |+.++++++
T Consensus 101 ~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~--~~~~~l~~~~i~~~-f~~i~~~d~ 152 (272)
T PRK13223 101 VVYPGVRDTLKWLKKQGVEMALITNKPER--FVAPLLDQMKIGRY-FRWIIGGDT 152 (272)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEECCcHH--HHHHHHHHcCcHhh-CeEEEecCC
Confidence 36899999999999999999999998743 35567888999887 688877764
No 66
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=98.27 E-value=2.3e-06 Score=74.71 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=48.0
Q ss_pred cCccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 28 ~~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
|.++.+++|+||||++... +-|...++|++|+++|++++++|..+.. .+...++.+|++
T Consensus 1 m~~kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~--~~~~~~~~l~~~ 60 (270)
T PRK10513 1 MAIKLIAIDMDGTLLLPDHTISPAVKQAIAAARAKGVNVVLTTGRPYA--GVHRYLKELHME 60 (270)
T ss_pred CceEEEEEecCCcCcCCCCccCHHHHHHHHHHHHCCCEEEEecCCChH--HHHHHHHHhCCC
Confidence 5789999999999998765 4578999999999999999999986642 344556667764
No 67
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=98.24 E-value=2.5e-06 Score=68.30 Aligned_cols=69 Identities=20% Similarity=0.091 Sum_probs=53.9
Q ss_pred cEEEEeccccccCCC---------------------------ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhH
Q 025564 31 KAWLLDQFGVLHDGK---------------------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK 83 (251)
Q Consensus 31 ~~~l~D~DGvL~~g~---------------------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~ 83 (251)
..+++|+||||.... .++||+.++|+.|+ ++++++++||+++.. ....|+
T Consensus 3 ~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~--~~~il~ 79 (148)
T smart00577 3 KTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMY--ADPVLD 79 (148)
T ss_pred cEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCcHHH--HHHHHH
Confidence 578999999998752 34899999999998 579999999988543 345678
Q ss_pred hCCCCCccccceeechhhH
Q 025564 84 SLGFDPSLFAGAITSGELT 102 (251)
Q Consensus 84 ~~Gl~~~~~~~Iits~~~~ 102 (251)
++|+....|+.|+++++..
T Consensus 80 ~l~~~~~~f~~i~~~~d~~ 98 (148)
T smart00577 80 LLDPKKYFGYRRLFRDECV 98 (148)
T ss_pred HhCcCCCEeeeEEECcccc
Confidence 8888654247788877654
No 68
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=98.22 E-value=2.8e-06 Score=71.79 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=46.2
Q ss_pred ccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 30 ~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
++.|++|+||||++... .-|.+.++|++|+++|++++++|+.+.. .+...++.+++.
T Consensus 1 ik~v~~DlDGTLl~~~~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~--~~~~~~~~l~~~ 58 (215)
T TIGR01487 1 IKLVAIDIDGTLTEPNRMISERAIEAIRKAEKKGIPVSLVTGNTVP--FARALAVLIGTS 58 (215)
T ss_pred CcEEEEecCCCcCCCCcccCHHHHHHHHHHHHCCCEEEEEcCCcch--hHHHHHHHhCCC
Confidence 47899999999998765 5589999999999999999999987643 244455666765
No 69
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=98.22 E-value=4.4e-06 Score=76.17 Aligned_cols=64 Identities=25% Similarity=0.391 Sum_probs=49.4
Q ss_pred ccEEEEeccccccCC------------CccCccHHHHHHHHHHCCCeEEEEeCCC---C-C---------chhHHHHhHh
Q 025564 30 FKAWLLDQFGVLHDG------------KKPYPGAISTLEMLATTGAKMVVISNSS---R-R---------ASTTIDKLKS 84 (251)
Q Consensus 30 ~~~~l~D~DGvL~~g------------~~~~pGa~e~L~~L~~~G~~v~ivTN~s---~-~---------~~~~~~~L~~ 84 (251)
.+.++||-||||+.. ..++||+.++|++|+++|++++|+||++ + . ...+...++.
T Consensus 2 ~k~l~lDrDgtl~~~~~~~y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~ 81 (354)
T PRK05446 2 QKILFIDRDGTLIEEPPTDFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFES 81 (354)
T ss_pred CcEEEEeCCCCccCCCCccccccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHH
Confidence 578999999999984 4689999999999999999999999962 1 0 1123456778
Q ss_pred CCCCCcccccee
Q 025564 85 LGFDPSLFAGAI 96 (251)
Q Consensus 85 ~Gl~~~~~~~Ii 96 (251)
+|+. |+.++
T Consensus 82 ~gl~---fd~i~ 90 (354)
T PRK05446 82 QGIK---FDEVL 90 (354)
T ss_pred cCCc---eeeEE
Confidence 8885 35544
No 70
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.20 E-value=3.5e-06 Score=73.91 Aligned_cols=59 Identities=17% Similarity=0.151 Sum_probs=49.0
Q ss_pred cCccEEEEeccccccCCCccC-ccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 28 RRFKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 28 ~~~~~~l~D~DGvL~~g~~~~-pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
.+++.+++|+||||++..+.+ +-..++|++|+++|++++++|+.+. ..+...++.+|++
T Consensus 5 ~~~~lI~~DlDGTLL~~~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~--~~i~~~~~~l~~~ 64 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHTYDWQPAAPWLTRLREAQVPVILCSSKTA--AEMLPLQQTLGLQ 64 (271)
T ss_pred CCCeEEEEeCccCCcCCCCcCcHHHHHHHHHHHHcCCeEEEEcCCCH--HHHHHHHHHhCCC
Confidence 478999999999999987655 6789999999999999999998663 3355667777774
No 71
>PRK10976 putative hydrolase; Provisional
Probab=98.17 E-value=4.7e-06 Score=72.61 Aligned_cols=57 Identities=19% Similarity=0.192 Sum_probs=46.8
Q ss_pred ccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 30 ~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
+|.+++|+||||++... +-|...++|++|+++|++++++|..+.. .+...++.+|++
T Consensus 2 ikli~~DlDGTLl~~~~~is~~~~~ai~~l~~~G~~~~iaTGR~~~--~~~~~~~~l~~~ 59 (266)
T PRK10976 2 YQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGIHFVFATGRHHV--DVGQIRDNLEIK 59 (266)
T ss_pred ceEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCChH--HHHHHHHhcCCC
Confidence 68999999999998765 5588999999999999999999986632 344556677775
No 72
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=98.17 E-value=2.4e-06 Score=70.36 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=41.8
Q ss_pred CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT 102 (251)
Q Consensus 45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~ 102 (251)
.+++||+.++|++|+ ++++++||+++. .....|+++|+... |+.|+++++..
T Consensus 83 ~~~~~g~~~~L~~L~---~~~~i~Tn~~~~--~~~~~l~~~gl~~~-fd~i~~~~~~~ 134 (184)
T TIGR01993 83 LKPDPELRNLLLRLP---GRKIIFTNGDRA--HARRALNRLGIEDC-FDGIFCFDTAN 134 (184)
T ss_pred CCCCHHHHHHHHhCC---CCEEEEeCCCHH--HHHHHHHHcCcHhh-hCeEEEeeccc
Confidence 457889999998887 589999998853 35678899999887 79999987654
No 73
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.16 E-value=4.7e-06 Score=73.00 Aligned_cols=57 Identities=18% Similarity=0.096 Sum_probs=47.1
Q ss_pred ccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 30 ~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
++.+++|+||||++..+ +-+...++|++|+++|++++++|..+. ..+...++++|++
T Consensus 2 ~kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~--~~~~~~~~~l~~~ 59 (272)
T PRK15126 2 ARLAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATGRHV--LEMQHILGALSLD 59 (272)
T ss_pred ccEEEEeCCCcCcCCCCcCCHHHHHHHHHHHHCCCEEEEECCCCH--HHHHHHHHHcCCC
Confidence 68999999999998665 568899999999999999999998663 2345566777775
No 74
>PLN02954 phosphoserine phosphatase
Probab=98.16 E-value=4.9e-06 Score=70.53 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=34.6
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
.++||+.++|+.|+++|++++|+||+.+.. +...++.+|++
T Consensus 84 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~--i~~~l~~~gi~ 124 (224)
T PLN02954 84 RLSPGIPELVKKLRARGTDVYLVSGGFRQM--IAPVAAILGIP 124 (224)
T ss_pred CCCccHHHHHHHHHHCCCEEEEECCCcHHH--HHHHHHHhCCC
Confidence 467999999999999999999999987533 45667888986
No 75
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=98.16 E-value=2.1e-06 Score=68.66 Aligned_cols=109 Identities=22% Similarity=0.242 Sum_probs=71.4
Q ss_pred HHhcccCccEEEEeccccccCCCccCccHHH-----------HHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCcc
Q 025564 23 HIAETRRFKAWLLDQFGVLHDGKKPYPGAIS-----------TLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSL 91 (251)
Q Consensus 23 ~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e-----------~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~ 91 (251)
+-+. +++.+++|+||||.+|.-.+..-.| -|+.|.+.|++++|+|... +.-++.+.+.+|+...
T Consensus 3 ~ra~--~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~Gik~l~~~Gi~vAIITGr~--s~ive~Ra~~LGI~~~- 77 (170)
T COG1778 3 ARAK--NIKLLILDVDGVLTDGKLYYDENGEEIKAFNVRDGHGIKLLLKSGIKVAIITGRD--SPIVEKRAKDLGIKHL- 77 (170)
T ss_pred hhhh--hceEEEEeccceeecCeEEEcCCCceeeeeeccCcHHHHHHHHcCCeEEEEeCCC--CHHHHHHHHHcCCcee-
Confidence 3455 8999999999999998744332222 4788999999999999744 3447789999999976
Q ss_pred ccceeechhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCcee
Q 025564 92 FAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKV 141 (251)
Q Consensus 92 ~~~Iits~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~ 141 (251)
+..+-..-.+..+.+++.+... ..+-.+|.+...+..++..|+..
T Consensus 78 ~qG~~dK~~a~~~L~~~~~l~~-----e~~ayiGDD~~Dlpvm~~vGls~ 122 (170)
T COG1778 78 YQGISDKLAAFEELLKKLNLDP-----EEVAYVGDDLVDLPVMEKVGLSV 122 (170)
T ss_pred eechHhHHHHHHHHHHHhCCCH-----HHhhhhcCccccHHHHHHcCCcc
Confidence 5666666666666666655421 11222333222344566666643
No 76
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.15 E-value=4.6e-06 Score=86.03 Aligned_cols=53 Identities=21% Similarity=0.400 Sum_probs=43.6
Q ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC-CccccceeechhhH
Q 025564 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD-PSLFAGAITSGELT 102 (251)
Q Consensus 47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~-~~~~~~Iits~~~~ 102 (251)
++||+.++|++|+++|++++|+||+.+. .+...|+++|+. .+ |+.+++++++.
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~--~~~~~L~~~gl~~~~-Fd~iv~~~~~~ 215 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRI--KVDANLAAAGLPLSM-FDAIVSADAFE 215 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHH--HHHHHHHHcCCChhH-CCEEEECcccc
Confidence 4789999999999999999999998743 355778999996 55 68898887654
No 77
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=98.12 E-value=6.7e-06 Score=71.65 Aligned_cols=60 Identities=27% Similarity=0.345 Sum_probs=50.2
Q ss_pred cCccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 28 ~~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
|.++.+++|+||||.+... .-+...++|++++++|++++++|+++. ..+...++.+++..
T Consensus 1 ~~~kli~~DlDGTLl~~~~~i~~~~~~al~~~~~~g~~v~iaTGR~~--~~~~~~~~~l~~~~ 61 (264)
T COG0561 1 MMIKLLAFDLDGTLLDSNKTISPETKEALARLREKGVKVVLATGRPL--PDVLSILEELGLDG 61 (264)
T ss_pred CCeeEEEEcCCCCccCCCCccCHHHHHHHHHHHHCCCEEEEECCCCh--HHHHHHHHHcCCCc
Confidence 4789999999999998887 558899999999999999999998764 33556677777763
No 78
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.11 E-value=7.1e-06 Score=72.61 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=47.9
Q ss_pred ccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 30 ~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
++.|++|+||||++... ..+-+.++|++|+++|++++++|+++ ..++...++++|+..
T Consensus 1 ~KLIftDLDGTLLd~~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt--~~ev~~l~~~Lgl~~ 59 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFNSYGAARQALAALERRSIPLVLYSLRT--RAQLEHLCRQLRLEH 59 (302)
T ss_pred CcEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCC--HHHHHHHHHHhCCCC
Confidence 47899999999999554 67889999999999999999999765 344666667788764
No 79
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.10 E-value=6.5e-06 Score=71.56 Aligned_cols=54 Identities=24% Similarity=0.255 Sum_probs=46.4
Q ss_pred EEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 33 WLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 33 ~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
+++|+||||++..+ .++.+.++|++|+++|++++++|+.+ ...+...++++|+.
T Consensus 2 i~~DlDGTll~~~~~~~~~~~~~i~~l~~~g~~~~~~TgR~--~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 2 IFTDLDGTLLDPHGYDWGPAKEVLERLQELGIPVIPCTSKT--AAEVEYLRKELGLE 56 (256)
T ss_pred EEEcCCCCCcCCCCcCchHHHHHHHHHHHCCCeEEEEcCCC--HHHHHHHHHHcCCC
Confidence 78999999999887 78889999999999999999999755 34466777888875
No 80
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.10 E-value=8.5e-06 Score=66.05 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=37.8
Q ss_pred EEEEeccccccCCC------------ccCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564 32 AWLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSSR 73 (251)
Q Consensus 32 ~~l~D~DGvL~~g~------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~ 73 (251)
.|++|+||||.+.. ...|++.+++++++++|++++++|+.+.
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~ 54 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQNNGYKILYLTARPI 54 (157)
T ss_pred CEEEecCCCCcccccccccccccccCcCCHHHHHHHHHHHHcCCeEEEEcCCcH
Confidence 37999999999876 5679999999999999999999998764
No 81
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=98.09 E-value=7.6e-06 Score=69.34 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=44.6
Q ss_pred EEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 33 WLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 33 ~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
+++|+||||.+..+ ..+...++|++|+++|++++++||++.. .+...++.+|+.
T Consensus 2 i~~DlDGTLL~~~~~~~~~~~~~l~~l~~~gi~~~i~TgR~~~--~~~~~~~~l~~~ 56 (221)
T TIGR02463 2 VFSDLDGTLLDSHSYDWQPAAPWLTRLQEAGIPVILCTSKTAA--EVEYLQKALGLT 56 (221)
T ss_pred EEEeCCCCCcCCCCCCcHHHHHHHHHHHHCCCeEEEEcCCCHH--HHHHHHHHcCCC
Confidence 78999999998766 5667999999999999999999998743 345566777775
No 82
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=98.08 E-value=4.3e-06 Score=66.64 Aligned_cols=53 Identities=30% Similarity=0.283 Sum_probs=39.9
Q ss_pred CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (251)
Q Consensus 44 g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~ 100 (251)
+...+||+.++|+.|+++|++++++||+++.. ....++.+ +... |+.++++++
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~--~~~~~~~~-l~~~-f~~i~~~~~ 114 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRA--QKLLLRKH-LGDY-FDLILGSDE 114 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHH--HHHHHHHH-HHhc-CcEEEecCC
Confidence 33457999999999999999999999988543 33455555 5555 577777665
No 83
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.07 E-value=1.1e-05 Score=77.09 Aligned_cols=72 Identities=22% Similarity=0.240 Sum_probs=55.0
Q ss_pred HHhcccCccEEEEeccccccCCC-------------ccCccHHHHHHHHHHCCCeEEEEeCCCCC------c----hhHH
Q 025564 23 HIAETRRFKAWLLDQFGVLHDGK-------------KPYPGAISTLEMLATTGAKMVVISNSSRR------A----STTI 79 (251)
Q Consensus 23 ~~~~~~~~~~~l~D~DGvL~~g~-------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~------~----~~~~ 79 (251)
+.-. +.+.++||+||||.... -++||+.+.|+.|++.|++++|+||.+.- . ..+.
T Consensus 163 ~~~~--~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~ 240 (526)
T TIGR01663 163 GVKG--QEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIE 240 (526)
T ss_pred CcCc--cCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHH
Confidence 4445 67899999999999643 15899999999999999999999998751 1 1245
Q ss_pred HHhHhCCCCCccccceeech
Q 025564 80 DKLKSLGFDPSLFAGAITSG 99 (251)
Q Consensus 80 ~~L~~~Gl~~~~~~~Iits~ 99 (251)
..|+++|++ |+.+++++
T Consensus 241 ~iL~~lgip---fdviia~~ 257 (526)
T TIGR01663 241 AIVAKLGVP---FQVFIAIG 257 (526)
T ss_pred HHHHHcCCc---eEEEEeCC
Confidence 667888986 45566554
No 84
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=98.06 E-value=5.8e-06 Score=71.21 Aligned_cols=46 Identities=22% Similarity=0.267 Sum_probs=36.2
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564 48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT 102 (251)
Q Consensus 48 ~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~ 102 (251)
+||+.++|++|++. ++++++||++.. ++.+|+..+ |+.|+++++..
T Consensus 115 ~~gv~~~L~~L~~~-~~l~i~Tn~~~~-------~~~~gl~~~-fd~i~~~~~~~ 160 (238)
T PRK10748 115 PQATHDTLKQLAKK-WPLVAITNGNAQ-------PELFGLGDY-FEFVLRAGPHG 160 (238)
T ss_pred CccHHHHHHHHHcC-CCEEEEECCCch-------HHHCCcHHh-hceeEecccCC
Confidence 47888899999875 899999997632 366899888 78888887654
No 85
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.04 E-value=1e-05 Score=66.20 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=44.0
Q ss_pred CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (251)
Q Consensus 45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~ 101 (251)
..++||+.++|+.|+++|++++++||+.+.. +...++++|+... |+.++++...
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~--~~~~l~~~~l~~~-f~~i~~~~~~ 124 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFF--IDPVLEGIGEKDV-FIEIYSNPAS 124 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHH--HHHHHHHcCChhh-eeEEeccCce
Confidence 5788999999999999999999999987532 4566788999877 6888876543
No 86
>PTZ00174 phosphomannomutase; Provisional
Probab=98.02 E-value=8.6e-06 Score=70.63 Aligned_cols=55 Identities=22% Similarity=0.219 Sum_probs=45.0
Q ss_pred ccCccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhH
Q 025564 27 TRRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK 83 (251)
Q Consensus 27 ~~~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~ 83 (251)
+|+++.|++|+||||.+... .-|...++|++|+++|++++++|..+. ..+.+.++
T Consensus 2 ~~~~klia~DlDGTLL~~~~~is~~~~~ai~~l~~~Gi~~viaTGR~~--~~i~~~l~ 57 (247)
T PTZ00174 2 EMKKTILLFDVDGTLTKPRNPITQEMKDTLAKLKSKGFKIGVVGGSDY--PKIKEQLG 57 (247)
T ss_pred CCCCeEEEEECcCCCcCCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHh
Confidence 37899999999999998876 558889999999999999999998653 23444443
No 87
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.00 E-value=1.5e-05 Score=69.20 Aligned_cols=55 Identities=25% Similarity=0.361 Sum_probs=44.9
Q ss_pred EEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 32 AWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 32 ~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
.|++|+||||++... .-+...++|++|+++|++++++|+.+. ..+...++++|+.
T Consensus 1 li~~DlDGTLl~~~~~i~~~~~~~i~~l~~~G~~~~iaTGR~~--~~~~~~~~~~~~~ 56 (256)
T TIGR00099 1 LIFIDLDGTLLNDDHTISPSTKEALAKLREKGIKVVLATGRPY--KEVKNILKELGLD 56 (256)
T ss_pred CEEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHcCCC
Confidence 378999999999865 457999999999999999999998773 2355566777765
No 88
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.97 E-value=1.2e-05 Score=67.91 Aligned_cols=54 Identities=26% Similarity=0.414 Sum_probs=45.1
Q ss_pred CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT 102 (251)
Q Consensus 45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~ 102 (251)
.+++|++.++|+.|+++ ++++++||+.+.. ...+|+++|+... |+.|++|++..
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~--~~~~l~~~gl~~~-Fd~v~~s~~~g 151 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGARPH--QERKLRQLGLLDY-FDAVFISEDVG 151 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCChHH--HHHHHHHcCChhh-hheEEEecccc
Confidence 46788889999999988 9999999976433 4478899999888 79999999866
No 89
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=97.97 E-value=5.8e-06 Score=69.00 Aligned_cols=69 Identities=16% Similarity=0.030 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564 172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL 244 (251)
Q Consensus 172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~ 244 (251)
+....+++.+.++|.++ |+||.+.... . .+..-.+...++.. +......+||+|.+|+.+++++|++|-
T Consensus 108 ~g~~~~l~~L~~~g~~~~i~Sn~~~~~~--~--~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~ 178 (203)
T TIGR02252 108 PDAIKLLKDLRERGLILGVISNFDSRLR--G--LLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPE 178 (203)
T ss_pred cCHHHHHHHHHHCCCEEEEEeCCchhHH--H--HHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChh
Confidence 34567777776778764 7788654221 1 11111222333332 333445689999999999999998764
No 90
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=97.90 E-value=2e-05 Score=66.69 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=42.8
Q ss_pred EEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 33 WLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 33 ~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
++||+||||++... +-|...++|++|+++|++++++|..+. ..+...++.+|+.
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~al~~l~~~Gi~~~~aTGR~~--~~~~~~~~~l~~~ 55 (225)
T TIGR01482 1 IASDIDGTLTDPNRAINESALEAIRKAESVGIPVVLVTGNSV--QFARALAKLIGTP 55 (225)
T ss_pred CeEeccCccCCCCcccCHHHHHHHHHHHHCCCEEEEEcCCch--HHHHHHHHHhCCC
Confidence 58999999998876 447889999999999999999998663 2344555667754
No 91
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=97.89 E-value=4.9e-05 Score=68.65 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=32.7
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
++.||+.++|+.|++.|++++|+||+.+.. ....++++|++.
T Consensus 181 ~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~--~~~l~~~Lgld~ 222 (322)
T PRK11133 181 PLMPGLTELVLKLQALGWKVAIASGGFTYF--ADYLRDKLRLDA 222 (322)
T ss_pred CCChhHHHHHHHHHHcCCEEEEEECCcchh--HHHHHHHcCCCe
Confidence 568999999999999999999999987532 223445678753
No 92
>PHA02597 30.2 hypothetical protein; Provisional
Probab=97.87 E-value=3e-05 Score=64.50 Aligned_cols=53 Identities=11% Similarity=0.223 Sum_probs=34.2
Q ss_pred CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc---cccceeechh
Q 025564 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS---LFAGAITSGE 100 (251)
Q Consensus 45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~---~~~~Iits~~ 100 (251)
..++||+.++|++|++++ +.+++||.+..... ..++.+|+... .|+.+++++.
T Consensus 73 ~~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~--~~~~~~~l~~~f~~~f~~i~~~~~ 128 (197)
T PHA02597 73 LSAYDDALDVINKLKEDY-DFVAVTALGDSIDA--LLNRQFNLNALFPGAFSEVLMCGH 128 (197)
T ss_pred ccCCCCHHHHHHHHHhcC-CEEEEeCCccchhH--HHHhhCCHHHhCCCcccEEEEecc
Confidence 458999999999999874 67888887643322 23344555432 1456666665
No 93
>PLN02887 hydrolase family protein
Probab=97.86 E-value=4.4e-05 Score=73.95 Aligned_cols=65 Identities=25% Similarity=0.335 Sum_probs=50.5
Q ss_pred ChHHHhcccCccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 20 GLRHIAETRRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 20 ~~~~~~~~~~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
+++.+-- +++.|++|+||||++..+ +-+...++|++|+++|++++++|+.+. ..+...++.+|+.
T Consensus 300 ~~~~~~~--~iKLIa~DLDGTLLn~d~~Is~~t~eAI~kl~ekGi~~vIATGR~~--~~i~~~l~~L~l~ 365 (580)
T PLN02887 300 SLRFYKP--KFSYIFCDMDGTLLNSKSQISETNAKALKEALSRGVKVVIATGKAR--PAVIDILKMVDLA 365 (580)
T ss_pred chhhhcc--CccEEEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCeEEEEcCCCH--HHHHHHHHHhCcc
Confidence 3334444 899999999999998765 568999999999999999999998663 2344556666664
No 94
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=97.80 E-value=5.6e-05 Score=61.98 Aligned_cols=58 Identities=26% Similarity=0.231 Sum_probs=39.1
Q ss_pred ccEEEEeccccccCC--------------------------CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhH
Q 025564 30 FKAWLLDQFGVLHDG--------------------------KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK 83 (251)
Q Consensus 30 ~~~~l~D~DGvL~~g--------------------------~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~ 83 (251)
.+.++||+|+|||.- ..++|++.++|+.|+++|.+++++|-++.. +-..+.|+
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P-~~A~~~L~ 81 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEP-DWARELLK 81 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-H-HHHHHHHH
T ss_pred CcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCCh-HHHHHHHH
Confidence 579999999999951 146899999999999999999999965532 23456778
Q ss_pred hCCCC
Q 025564 84 SLGFD 88 (251)
Q Consensus 84 ~~Gl~ 88 (251)
.+++.
T Consensus 82 ~l~i~ 86 (169)
T PF12689_consen 82 LLEID 86 (169)
T ss_dssp HTT-C
T ss_pred hcCCC
Confidence 88888
No 95
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=97.79 E-value=4.9e-05 Score=64.40 Aligned_cols=54 Identities=33% Similarity=0.423 Sum_probs=43.6
Q ss_pred EEEeccccccCCC-ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 33 WLLDQFGVLHDGK-KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 33 ~l~D~DGvL~~g~-~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
|++|+||||.+.. .+-|...++|++|+++|.+++++|+.+. ..+...++.+++.
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~al~~l~~~g~~~~i~TGR~~--~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGKISPETIEALKELQEKGIKLVIATGRSY--SSIKRLLKELGID 55 (254)
T ss_dssp EEEECCTTTCSTTSSSCHHHHHHHHHHHHTTCEEEEECSSTH--HHHHHHHHHTTHC
T ss_pred cEEEECCceecCCCeeCHHHHHHHHhhcccceEEEEEccCcc--cccccccccccch
Confidence 6899999998755 4568999999999999999999997653 3355666677766
No 96
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=97.78 E-value=4.9e-05 Score=63.39 Aligned_cols=41 Identities=24% Similarity=0.441 Sum_probs=33.4
Q ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
++||+.++|+.|+++ ++++++||+.+.. ....++++|+...
T Consensus 69 ~~pg~~e~L~~L~~~-~~~~IvS~~~~~~--~~~~l~~~gl~~~ 109 (205)
T PRK13582 69 PLPGAVEFLDWLRER-FQVVILSDTFYEF--AGPLMRQLGWPTL 109 (205)
T ss_pred CCCCHHHHHHHHHhc-CCEEEEeCCcHHH--HHHHHHHcCCchh
Confidence 479999999999999 9999999987532 4466788898754
No 97
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.74 E-value=3.7e-05 Score=61.39 Aligned_cols=57 Identities=35% Similarity=0.567 Sum_probs=48.2
Q ss_pred CCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT 102 (251)
Q Consensus 43 ~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~ 102 (251)
...+++||+.++|+.|+++|++++++||+++ ..+...|+++|+... |+.++++++..
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~--~~~~~~l~~~~~~~~-f~~i~~~~~~~ 130 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSR--ERIERVLERLGLDDY-FDEIISSDDVG 130 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEH--HHHHHHHHHTTHGGG-CSEEEEGGGSS
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCc--ccccccccccccccc-cccccccchhh
Confidence 4567899999999999999999999999863 346688899999977 69999887544
No 98
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=97.71 E-value=0.00013 Score=61.52 Aligned_cols=42 Identities=24% Similarity=0.406 Sum_probs=33.8
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
+++||+.++|+.|++.+ +++++||+.+.. ....++++|++..
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~--~~~il~~lgi~~~ 109 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTFYEF--SQPLMRQLGFPTL 109 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCChHHH--HHHHHHHcCCchh
Confidence 67999999999999975 999999987432 3456778898754
No 99
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.70 E-value=9.8e-06 Score=70.20 Aligned_cols=67 Identities=9% Similarity=0.085 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHH-HH-hCCCeEEecCCCHHHHHHHHHhcCCc
Q 025564 173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKF-EK-LGGEVRWMGKPDKVVQLLCSLSSSVI 242 (251)
Q Consensus 173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~-~~-~g~~~~~~GKP~~~~~~~a~~~l~~~ 242 (251)
.....++.+..+|.++ |+||........ .+..-.+...+ .. .+.+....+||+|.+|..+++++++.
T Consensus 103 g~~e~L~~L~~~g~~l~IvT~~~~~~~~~---~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~ 172 (253)
T TIGR01422 103 GVIEVIAYLRARGIKIGSTTGYTREMMDV---VAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVY 172 (253)
T ss_pred CHHHHHHHHHHCCCeEEEECCCcHHHHHH---HHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCC
Confidence 3466677766778876 666654332110 00000011111 22 13444457899999999999999984
No 100
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=97.69 E-value=3.2e-05 Score=64.96 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL 244 (251)
Q Consensus 171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~ 244 (251)
|..+...++.+.++|.++ ++||......... .......+...++.. +....-.+||+|.+|+.+++++|++|-
T Consensus 96 ~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~-~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~ 170 (211)
T TIGR02247 96 RPSMMAAIKTLRAKGFKTACITNNFPTDHSAE-EALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPE 170 (211)
T ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCCccchhh-hHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHH
Confidence 345677787777788876 6677533211000 011112233444432 333445689999999999999998773
No 101
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=97.69 E-value=0.00012 Score=60.00 Aligned_cols=62 Identities=23% Similarity=0.277 Sum_probs=47.7
Q ss_pred cCccEEEEeccccc--cCCCccCccHHHHHHHHHHCCC--eEEEEeCCCC-C---chhHHHHh-HhCCCCC
Q 025564 28 RRFKAWLLDQFGVL--HDGKKPYPGAISTLEMLATTGA--KMVVISNSSR-R---ASTTIDKL-KSLGFDP 89 (251)
Q Consensus 28 ~~~~~~l~D~DGvL--~~g~~~~pGa~e~L~~L~~~G~--~v~ivTN~s~-~---~~~~~~~L-~~~Gl~~ 89 (251)
..+++++||.|.|| |...++.|...+.+++|++.+. +++|+|||.. . ...-++.+ +.+|++.
T Consensus 39 ~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpv 109 (168)
T PF09419_consen 39 KGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPV 109 (168)
T ss_pred cCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcE
Confidence 48999999999999 4666788999999999999876 4999999852 1 12223444 5588774
No 102
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.69 E-value=8.1e-05 Score=62.32 Aligned_cols=55 Identities=24% Similarity=0.343 Sum_probs=45.9
Q ss_pred CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (251)
Q Consensus 44 g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~ 101 (251)
...++||+.++|+.|+++|++++++||+++. .+...|+++|+... |+.++++++.
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~--~~~~~l~~~~l~~~-f~~~~~~~~~ 137 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTP--LARPLLELLGLAKY-FSVLIGGDSL 137 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHcCcHhh-CcEEEecCCC
Confidence 3578999999999999999999999998743 35678889999887 6888887653
No 103
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=97.68 E-value=0.00013 Score=62.65 Aligned_cols=62 Identities=21% Similarity=0.372 Sum_probs=51.1
Q ss_pred CccEEEEeccccccC---------------------------CCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHH
Q 025564 29 RFKAWLLDQFGVLHD---------------------------GKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTID 80 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~---------------------------g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~ 80 (251)
..++++||+|-|+.. ...++|++.++++.|+++|++++|+||.+. .++...+
T Consensus 76 g~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~ 155 (229)
T TIGR01675 76 GMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLD 155 (229)
T ss_pred CCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHH
Confidence 678999999999865 225789999999999999999999999774 2334567
Q ss_pred HhHhCCCCCc
Q 025564 81 KLKSLGFDPS 90 (251)
Q Consensus 81 ~L~~~Gl~~~ 90 (251)
.|.+.|++..
T Consensus 156 nL~~~G~~~~ 165 (229)
T TIGR01675 156 NLINAGFTGW 165 (229)
T ss_pred HHHHcCCCCc
Confidence 8889999864
No 104
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.67 E-value=7.7e-05 Score=62.00 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=47.1
Q ss_pred CCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (251)
Q Consensus 43 ~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~ 101 (251)
....++||+.++|++|+++|++++++||++. ..+...++++|+... |+.+++++++
T Consensus 89 ~~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~--~~~~~~l~~~gl~~~-fd~i~~s~~~ 144 (198)
T TIGR01428 89 LRLPPHPDVPAGLRALKERGYRLAILSNGSP--AMLKSLVKHAGLDDP-FDAVLSADAV 144 (198)
T ss_pred hcCCCCCCHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHCCChhh-hheeEehhhc
Confidence 3456899999999999999999999999874 335677889999887 7999998764
No 105
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=97.62 E-value=5e-05 Score=65.31 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=51.5
Q ss_pred CccEEEEeccccccC---------------------------CCccCccHHHHHHHHHHCCCeEEEEeCCCCC-chhHHH
Q 025564 29 RFKAWLLDQFGVLHD---------------------------GKKPYPGAISTLEMLATTGAKMVVISNSSRR-ASTTID 80 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~---------------------------g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~-~~~~~~ 80 (251)
+..+++||+|+|+.+ ...++||+.++++.++++|..++|+||.+.. ++.-.+
T Consensus 71 ~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~ 150 (229)
T PF03767_consen 71 KPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATEK 150 (229)
T ss_dssp SEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHH
T ss_pred CCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHH
Confidence 678999999999864 1367999999999999999999999997643 344567
Q ss_pred HhHhCCCCCc
Q 025564 81 KLKSLGFDPS 90 (251)
Q Consensus 81 ~L~~~Gl~~~ 90 (251)
.|++.|+...
T Consensus 151 nL~~~G~~~~ 160 (229)
T PF03767_consen 151 NLKKAGFPGW 160 (229)
T ss_dssp HHHHHTTSTB
T ss_pred HHHHcCCCcc
Confidence 8999998764
No 106
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=97.60 E-value=0.00019 Score=62.94 Aligned_cols=62 Identities=18% Similarity=0.316 Sum_probs=50.3
Q ss_pred CccEEEEeccccccC----------------------------CCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHH
Q 025564 29 RFKAWLLDQFGVLHD----------------------------GKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTI 79 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~----------------------------g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~ 79 (251)
..++++||+|+|+.+ ...++||+.++.++++++|.+++++||.+. .++.-.
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~ 179 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTE 179 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHH
Confidence 568999999999872 225689999999999999999999999874 233445
Q ss_pred HHhHhCCCCCc
Q 025564 80 DKLKSLGFDPS 90 (251)
Q Consensus 80 ~~L~~~Gl~~~ 90 (251)
+-|++.|+...
T Consensus 180 ~NL~kaGy~~~ 190 (275)
T TIGR01680 180 ANLKKAGYHTW 190 (275)
T ss_pred HHHHHcCCCCc
Confidence 77888999854
No 107
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=97.59 E-value=0.00013 Score=59.30 Aligned_cols=42 Identities=36% Similarity=0.498 Sum_probs=33.3
Q ss_pred cEEEEeccccccCCC------------ccC-ccHHHHHHHHHHCCCeEEEEeCCC
Q 025564 31 KAWLLDQFGVLHDGK------------KPY-PGAISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 31 ~~~l~D~DGvL~~g~------------~~~-pGa~e~L~~L~~~G~~v~ivTN~s 72 (251)
|..+||+||||.... .++ |++.+.|++|.+.|+.++|+||-+
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~ 55 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQS 55 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-C
T ss_pred CEEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCcc
Confidence 468999999997532 245 589999999999999999999975
No 108
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=97.52 E-value=0.0002 Score=60.75 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=33.0
Q ss_pred CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
..++||+.++|+.|+++|++++|+||+.+.. +...|+++ +.
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~--i~~il~~~-~~ 113 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFF--VYPLLQGL-IP 113 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHH--HHHHHHHh-CC
Confidence 4678999999999999999999999987532 44566666 53
No 109
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.52 E-value=0.00021 Score=69.81 Aligned_cols=59 Identities=20% Similarity=0.170 Sum_probs=47.0
Q ss_pred cCccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 28 ~~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
|..+.|++|+||||.+... ..+.+.++|++|+++|++++++|..+. ..+...++.+|+.
T Consensus 414 ~~~KLIfsDLDGTLLd~d~~i~~~t~eAL~~L~ekGI~~VIATGRs~--~~i~~l~~~Lgl~ 473 (694)
T PRK14502 414 QFKKIVYTDLDGTLLNPLTYSYSTALDALRLLKDKELPLVFCSAKTM--GEQDLYRNELGIK 473 (694)
T ss_pred ceeeEEEEECcCCCcCCCCccCHHHHHHHHHHHHcCCeEEEEeCCCH--HHHHHHHHHcCCC
Confidence 3568999999999998654 567889999999999999999998763 2344555667764
No 110
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.51 E-value=0.00023 Score=59.40 Aligned_cols=51 Identities=29% Similarity=0.383 Sum_probs=40.7
Q ss_pred EEEEeccccccCCC--ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHh
Q 025564 32 AWLLDQFGVLHDGK--KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS 84 (251)
Q Consensus 32 ~~l~D~DGvL~~g~--~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~ 84 (251)
.+++|+||||.... ++-+.+.++|++|+++|.+++++|+++.. .+...++.
T Consensus 1 li~~D~DgTL~~~~~~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~--~~~~~~~~ 53 (204)
T TIGR01484 1 LLFFDLDGTLLDPNAHELSPETIEALERLREAGVKVVLVTGRSLA--EIKELLKQ 53 (204)
T ss_pred CEEEeCcCCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEECCCCHH--HHHHHHHh
Confidence 37899999999764 46689999999999999999999987743 24444444
No 111
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=97.49 E-value=0.00026 Score=57.54 Aligned_cols=52 Identities=35% Similarity=0.530 Sum_probs=42.4
Q ss_pred CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (251)
Q Consensus 45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~ 100 (251)
.+++||+.++|+.|+++|++++++||++... ...+.++|+... |+.++++.+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~---~~~~~~~~l~~~-f~~i~~~~~ 135 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH---AVLVQELGLRDL-FDVVIFSGD 135 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH---HHHHHhcCCHHH-CCEEEEcCC
Confidence 4788999999999999999999999988533 234445899887 788888754
No 112
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=97.48 E-value=0.00019 Score=58.61 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=44.0
Q ss_pred CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (251)
Q Consensus 44 g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~ 101 (251)
...++||+.++|++|+++|++++++||+.. ....|+++|+... |+.++++.+.
T Consensus 85 ~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~----~~~~l~~~~l~~~-f~~~~~~~~~ 137 (185)
T TIGR01990 85 PADVLPGIKNLLDDLKKNNIKIALASASKN----APTVLEKLGLIDY-FDAIVDPAEI 137 (185)
T ss_pred CcccCccHHHHHHHHHHCCCeEEEEeCCcc----HHHHHHhcCcHhh-CcEEEehhhc
Confidence 347899999999999999999999998642 2356889999988 7888888754
No 113
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.44 E-value=0.00035 Score=60.19 Aligned_cols=73 Identities=16% Similarity=0.084 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhCCCc-EEEccCCccccccCceeeCchHHHHHHHHh--CCCeEEecCCCHHHHHHHHHhcCCceEEEEee
Q 025564 173 DLEKILEICASKKIP-MVVANPDYVTVEARALRVMPGTLASKFEKL--GGEVRWMGKPDKVVQLLCSLSSSVIILFLIFL 249 (251)
Q Consensus 173 ~l~~a~~~~~~~g~~-li~~n~D~~~~~~~~~~~~~G~i~~~~~~~--g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~~ 249 (251)
.++.+++.+.++|.. .+.+|-|...+... ...|. ...+... +.+ .-+=||+|.||++|+++++++|-=.+|+
T Consensus 117 ~~~~~lq~lR~~g~~l~iisN~d~r~~~~l---~~~~l-~~~fD~vv~S~e-~g~~KPDp~If~~al~~l~v~Pee~vhI 191 (237)
T KOG3085|consen 117 GMQELLQKLRKKGTILGIISNFDDRLRLLL---LPLGL-SAYFDFVVESCE-VGLEKPDPRIFQLALERLGVKPEECVHI 191 (237)
T ss_pred HHHHHHHHHHhCCeEEEEecCCcHHHHHHh---hccCH-HHhhhhhhhhhh-hccCCCChHHHHHHHHHhCCChHHeEEe
Confidence 445777777778844 47789888877322 22222 1333321 222 2455999999999999999999888877
Q ss_pred c
Q 025564 250 D 250 (251)
Q Consensus 250 ~ 250 (251)
|
T Consensus 192 g 192 (237)
T KOG3085|consen 192 G 192 (237)
T ss_pred c
Confidence 5
No 114
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00032 Score=58.00 Aligned_cols=43 Identities=40% Similarity=0.511 Sum_probs=38.7
Q ss_pred ccEEEEeccccccCCCc----------cCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564 30 FKAWLLDQFGVLHDGKK----------PYPGAISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 30 ~~~~l~D~DGvL~~g~~----------~~pGa~e~L~~L~~~G~~v~ivTN~s 72 (251)
.+++++|-||||..... ++||+.+++..|++.|++++++||.+
T Consensus 5 ~k~lflDRDGtin~d~~~yv~~~~~~~~~~g~i~al~~l~~~gy~lVvvTNQs 57 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPALLKLQRAGYKLVVVTNQS 57 (181)
T ss_pred CcEEEEcCCCceecCCCcccCcHHHhccCccHHHHHHHHHhCCCeEEEEECCC
Confidence 57999999999986554 68999999999999999999999965
No 115
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=97.38 E-value=0.00021 Score=61.26 Aligned_cols=54 Identities=9% Similarity=0.084 Sum_probs=44.1
Q ss_pred EEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 32 AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 32 ~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
.+++|+||||++..+.++...++++ ++++|++++++|..+ ...+...++.+++.
T Consensus 1 li~~DlDgTLl~~~~~~~~~~~~~~-~~~~gi~~viaTGR~--~~~v~~~~~~l~l~ 54 (236)
T TIGR02471 1 LIITDLDNTLLGDDEGLASFVELLR-GSGDAVGFGIATGRS--VESAKSRYAKLNLP 54 (236)
T ss_pred CeEEeccccccCCHHHHHHHHHHHH-hcCCCceEEEEeCCC--HHHHHHHHHhCCCC
Confidence 3789999999998777777777777 689999999999755 45577888888886
No 116
>PLN02423 phosphomannomutase
Probab=97.37 E-value=0.00037 Score=60.43 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=36.3
Q ss_pred CccEEE-EeccccccCCCccC-ccHHHHHHHHHHCCCeEEEEeCCC
Q 025564 29 RFKAWL-LDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 29 ~~~~~l-~D~DGvL~~g~~~~-pGa~e~L~~L~~~G~~v~ivTN~s 72 (251)
+++.++ ||+||||.++.+.+ |...++|++|+++ ++++++|..+
T Consensus 5 ~~~~i~~~D~DGTLl~~~~~i~~~~~~ai~~l~~~-i~fviaTGR~ 49 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPRKEATPEMLEFMKELRKV-VTVGVVGGSD 49 (245)
T ss_pred ccceEEEEeccCCCcCCCCcCCHHHHHHHHHHHhC-CEEEEECCcC
Confidence 566555 99999999988755 6889999999976 9999999764
No 117
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=97.36 E-value=0.00036 Score=61.30 Aligned_cols=54 Identities=24% Similarity=0.271 Sum_probs=42.4
Q ss_pred cEEEEeccccccC------CCccCccHHHHHHHHHH-CCCeEEEEeCCCCCchhHHHHhHhCC
Q 025564 31 KAWLLDQFGVLHD------GKKPYPGAISTLEMLAT-TGAKMVVISNSSRRASTTIDKLKSLG 86 (251)
Q Consensus 31 ~~~l~D~DGvL~~------g~~~~pGa~e~L~~L~~-~G~~v~ivTN~s~~~~~~~~~L~~~G 86 (251)
..|++|+||||.+ ...+-|...+.|++|++ .|.+++|+|+.+. ..+.+.++.++
T Consensus 15 ~li~~D~DGTLl~~~~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~--~~~~~~~~~~~ 75 (266)
T PRK10187 15 YAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLATANDGALALISGRSM--VELDALAKPYR 75 (266)
T ss_pred EEEEEecCCCCCCCCCCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCH--HHHHHhcCccc
Confidence 5899999999997 34677899999999998 7999999997653 33445554444
No 118
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.34 E-value=3.6e-05 Score=64.49 Aligned_cols=72 Identities=22% Similarity=0.180 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceEEEE
Q 025564 173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIILFLI 247 (251)
Q Consensus 173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~ 247 (251)
....+++.+..+|.++ |+||........ .+..-.+...+... +.+....+||+|.+|..+++++++++--.+
T Consensus 89 g~~~~L~~l~~~g~~~~i~S~~~~~~~~~---~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~ 162 (213)
T TIGR01449 89 GVEATLGALRAKGLRLGLVTNKPTPLARP---LLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMV 162 (213)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCCHHHHHH---HHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeE
Confidence 3466677666778765 666654432211 01111122223322 444445689999999999999998774333
No 119
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=97.34 E-value=0.00035 Score=60.46 Aligned_cols=56 Identities=16% Similarity=0.041 Sum_probs=44.4
Q ss_pred EEEEeccccccC---CC-ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 32 AWLLDQFGVLHD---GK-KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 32 ~~l~D~DGvL~~---g~-~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
.++.|+||||.+ +. +..|...+++++++++|++++++|..+ ..++...++.+++..
T Consensus 3 li~tDlDGTLl~~~~~~~~~~~~~~~~i~~~~~~gi~fv~aTGR~--~~~~~~~~~~~~~~~ 62 (249)
T TIGR01485 3 LLVSDLDNTLVDHTDGDNQALLRLNALLEDHRGEDSLLVYSTGRS--PHSYKELQKQKPLLT 62 (249)
T ss_pred EEEEcCCCcCcCCCCCChHHHHHHHHHHHHhhccCceEEEEcCCC--HHHHHHHHhcCCCCC
Confidence 688899999996 44 456899999999999999999999755 444556666677754
No 120
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.33 E-value=0.00037 Score=56.37 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=36.1
Q ss_pred EEEeccccccCCC------------ccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564 33 WLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 33 ~l~D~DGvL~~g~------------~~~pGa~e~L~~L~~~G~~v~ivTN~s 72 (251)
|++|+||||...+ ...||+.++++.++++|+++..+|..+
T Consensus 2 VvsDIDGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaRp 53 (157)
T PF08235_consen 2 VVSDIDGTITKSDVLGHILPILGKDWTHPGAAELYRKIADNGYKILYLTARP 53 (157)
T ss_pred EEEeccCCcCccchhhhhhhccCchhhhhcHHHHHHHHHHCCeEEEEECcCc
Confidence 7899999999874 467999999999999999999999765
No 121
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=97.31 E-value=9e-05 Score=65.75 Aligned_cols=71 Identities=15% Similarity=0.137 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCCCcE-EEccCCccccccC-ceeeCchHHHHHHHHhCCCeEEecCCCHHHHHHHHHhcCCce
Q 025564 172 QDLEKILEICASKKIPM-VVANPDYVTVEAR-ALRVMPGTLASKFEKLGGEVRWMGKPDKVVQLLCSLSSSVII 243 (251)
Q Consensus 172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~-~~~~~~G~i~~~~~~~g~~~~~~GKP~~~~~~~a~~~l~~~~ 243 (251)
+.....++.+..+|.++ |+||......... ....+.+ +...+...+......+||+|.+|..++++++++|
T Consensus 147 pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~-~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p 219 (286)
T PLN02779 147 PGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPE-RAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDP 219 (286)
T ss_pred hhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcccc-ccCceEEEeccccCCCCCCHHHHHHHHHHhCcCh
Confidence 44566777767778876 6667533211100 0000000 0000111123334568999999999999999876
No 122
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.29 E-value=0.00034 Score=60.55 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=45.6
Q ss_pred CCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (251)
Q Consensus 43 ~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~ 101 (251)
....++||+.++|++|+++|++++++||+++. .+...|+++|+....++.|++++++
T Consensus 96 ~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~--~~~~~l~~~gl~~~f~d~ii~~~~~ 152 (253)
T TIGR01422 96 EYSSPIPGVIEVIAYLRARGIKIGSTTGYTRE--MMDVVAPEAALQGYRPDYNVTTDDV 152 (253)
T ss_pred hcCccCCCHHHHHHHHHHCCCeEEEECCCcHH--HHHHHHHHHHhcCCCCceEEccccC
Confidence 34578999999999999999999999998743 3556788889887622678887754
No 123
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=97.27 E-value=0.00038 Score=57.94 Aligned_cols=52 Identities=37% Similarity=0.397 Sum_probs=44.3
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~ 101 (251)
.++||+.++|++|+++|++++++||++.. +...|+++|+... |+.++++.+.
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~---~~~~l~~~~l~~~-fd~i~~s~~~ 156 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSR---LRGLLEALGLLEY-FDFVVTSYEV 156 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchh---HHHHHHHCCcHHh-cceEEeeccc
Confidence 68999999999999999999999997642 4567889999888 7899888764
No 124
>PRK08238 hypothetical protein; Validated
Probab=97.25 E-value=0.0006 Score=64.79 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=38.1
Q ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (251)
Q Consensus 47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~ 101 (251)
..||+.+.+++++++|++++++||+.+.. ....++++|+ |+.++++++.
T Consensus 73 ~~pga~e~L~~lk~~G~~v~LaTas~~~~--a~~i~~~lGl----Fd~Vigsd~~ 121 (479)
T PRK08238 73 YNEEVLDYLRAERAAGRKLVLATASDERL--AQAVAAHLGL----FDGVFASDGT 121 (479)
T ss_pred CChhHHHHHHHHHHCCCEEEEEeCCCHHH--HHHHHHHcCC----CCEEEeCCCc
Confidence 46999999999999999999999987532 3455677887 3667766643
No 125
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=97.24 E-value=0.00094 Score=57.29 Aligned_cols=63 Identities=35% Similarity=0.468 Sum_probs=52.3
Q ss_pred CccEEEEeccccccC---------------------------CCccCccHHHHHHHHHHCCCeEEEEeCCCCCc--hhHH
Q 025564 29 RFKAWLLDQFGVLHD---------------------------GKKPYPGAISTLEMLATTGAKMVVISNSSRRA--STTI 79 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~---------------------------g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~--~~~~ 79 (251)
+..+|++|+|-|+.+ ..+++|||.||+++..++|..+.++||..+.. ..-.
T Consensus 78 K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~ 157 (274)
T COG2503 78 KKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTI 157 (274)
T ss_pred CCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhH
Confidence 445999999999987 24789999999999999999999999987533 3345
Q ss_pred HHhHhCCCCCcc
Q 025564 80 DKLKSLGFDPSL 91 (251)
Q Consensus 80 ~~L~~~Gl~~~~ 91 (251)
+.|++.|++...
T Consensus 158 ~nLk~~g~~~~~ 169 (274)
T COG2503 158 ENLKSEGLPQVL 169 (274)
T ss_pred HHHHHcCccccc
Confidence 789999998763
No 126
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=97.23 E-value=0.0004 Score=58.25 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=42.5
Q ss_pred CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (251)
Q Consensus 45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~ 101 (251)
..++||+.++|+.|+++|++++++||++.........+...++... |+.++++.+.
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~-fd~v~~s~~~ 148 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMAL-FDAVVESCLE 148 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhh-CCEEEEeeec
Confidence 4689999999999999999999999987532222234455677777 6888877654
No 127
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=97.23 E-value=0.00069 Score=54.88 Aligned_cols=44 Identities=23% Similarity=0.241 Sum_probs=34.6
Q ss_pred CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 44 g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
...+.||+.++++.++++|++++++|++.+. .+...++++|+..
T Consensus 71 ~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~--~i~~~~~~~g~~~ 114 (177)
T TIGR01488 71 QVALRPGARELISWLKERGIDTVIVSGGFDF--FVEPVAEKLGIDD 114 (177)
T ss_pred cCCcCcCHHHHHHHHHHCCCEEEEECCCcHH--HHHHHHHHcCCch
Confidence 3456799999999999999999999997643 2445677788764
No 128
>PLN02811 hydrolase
Probab=97.21 E-value=0.00073 Score=57.30 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=40.7
Q ss_pred CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHh-HhCCCCCccccceeech
Q 025564 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKL-KSLGFDPSLFAGAITSG 99 (251)
Q Consensus 44 g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L-~~~Gl~~~~~~~Iits~ 99 (251)
...++||+.++|+.|+++|++++++||+++.. +...+ +..++... |+.+++++
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~--~~~~~~~~~~l~~~-f~~i~~~~ 129 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKRH--FDLKTQRHGELFSL-MHHVVTGD 129 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCchhh--HHHHHcccHHHHhh-CCEEEECC
Confidence 45789999999999999999999999987532 22333 33467666 68888887
No 129
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=97.19 E-value=0.00067 Score=54.92 Aligned_cols=52 Identities=19% Similarity=0.080 Sum_probs=36.8
Q ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccc-cceeechhh
Q 025564 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLF-AGAITSGEL 101 (251)
Q Consensus 47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~-~~Iits~~~ 101 (251)
+.||+.++|+.|++. +.+++.||+++.. ....++.++.....| +.+++.++.
T Consensus 59 ~rPgv~efL~~l~~~-yel~I~T~~~~~y--A~~vl~~ldp~~~~F~~ri~~rd~~ 111 (156)
T TIGR02250 59 LRPFLHEFLKEASKL-YEMHVYTMGTRAY--AQAIAKLIDPDGKYFGDRIISRDES 111 (156)
T ss_pred ECCCHHHHHHHHHhh-cEEEEEeCCcHHH--HHHHHHHhCcCCCeeccEEEEeccC
Confidence 479999999999955 9999999988643 234567777774215 445665543
No 130
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.09 E-value=0.0012 Score=55.91 Aligned_cols=60 Identities=22% Similarity=0.176 Sum_probs=46.3
Q ss_pred CccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
....|+.|+||||.....-...|.+.+.+|++.|++++++|++++ .++..--+.+|+...
T Consensus 6 ~~~lIFtDlD~TLl~~~ye~~pA~pv~~el~d~G~~Vi~~SSKT~--aE~~~l~~~l~v~~~ 65 (274)
T COG3769 6 MPLLIFTDLDGTLLPHSYEWQPAAPVLLELKDAGVPVILCSSKTR--AEMLYLQKSLGVQGL 65 (274)
T ss_pred cceEEEEcccCcccCCCCCCCccchHHHHHHHcCCeEEEeccchH--HHHHHHHHhcCCCCC
Confidence 356899999999999666677899999999999999999998764 233233345777743
No 131
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=97.02 E-value=0.0017 Score=52.75 Aligned_cols=66 Identities=17% Similarity=0.092 Sum_probs=47.8
Q ss_pred cEEEEeccccccCCC-------------------------ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhC
Q 025564 31 KAWLLDQFGVLHDGK-------------------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL 85 (251)
Q Consensus 31 ~~~l~D~DGvL~~g~-------------------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~ 85 (251)
..+++|+|+||.... ..-||+.|+|+.|.+. +.++|.|++++.. ....++.+
T Consensus 2 ~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~y--A~~il~~l 78 (162)
T TIGR02251 2 KTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEY--ADPVLDIL 78 (162)
T ss_pred cEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHH--HHHHHHHH
Confidence 478999999998532 1359999999999987 9999999987532 33566777
Q ss_pred CCCCccccceeech
Q 025564 86 GFDPSLFAGAITSG 99 (251)
Q Consensus 86 Gl~~~~~~~Iits~ 99 (251)
+.....|+.++...
T Consensus 79 dp~~~~f~~~l~r~ 92 (162)
T TIGR02251 79 DRGGKVISRRLYRE 92 (162)
T ss_pred CcCCCEEeEEEEcc
Confidence 76642145665544
No 132
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=97.02 E-value=0.0017 Score=55.14 Aligned_cols=43 Identities=30% Similarity=0.401 Sum_probs=33.7
Q ss_pred CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHH-HhHhCCCCCc
Q 025564 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGFDPS 90 (251)
Q Consensus 45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~-~L~~~Gl~~~ 90 (251)
..+.||+.++++.++++|.+++++|.+.. .+.+ ..+.+|++..
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~---~lv~~ia~~lg~d~~ 119 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFT---FLVEPIAERLGIDYV 119 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChH---HHHHHHHHHhCCchh
Confidence 46789999999999999999999998763 2333 3356888765
No 133
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=97.01 E-value=0.00087 Score=55.73 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=44.8
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT 102 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~ 102 (251)
++.+++.++|+.|+++|++++++||+++. .+...|+.+|+... |+.+++++++.
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~--~~~~~l~~~gl~~~-f~~~~~~~~~~ 159 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRK--DAAKFLTTHGLEIL-FPVQIWMEDCP 159 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHH--HHHHHHHHcCchhh-CCEEEeecCCC
Confidence 46677899999999999999999998743 35678899999988 78888887743
No 134
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=97.01 E-value=0.0012 Score=56.56 Aligned_cols=50 Identities=16% Similarity=0.190 Sum_probs=36.8
Q ss_pred CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCC-CCCccccceee
Q 025564 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG-FDPSLFAGAIT 97 (251)
Q Consensus 45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~G-l~~~~~~~Iit 97 (251)
..++||+.++++.|+..|++++++||+++.. +..++++++ +... |..++.
T Consensus 91 ~~~~PGa~kLv~~L~~~gip~alat~s~~~~--~~~k~~~~~~~~~~-f~~~v~ 141 (222)
T KOG2914|consen 91 SILMPGAEKLVNHLKNNGIPVALATSSTSAS--FELKISRHEDIFKN-FSHVVL 141 (222)
T ss_pred cccCCcHHHHHHHHHhCCCCeeEEecCCccc--HHHHHHHhhHHHHh-cCCCee
Confidence 4678999999999999999999999987543 345555555 4433 455444
No 135
>COG4996 Predicted phosphatase [General function prediction only]
Probab=96.97 E-value=0.0014 Score=51.16 Aligned_cols=63 Identities=21% Similarity=0.218 Sum_probs=48.9
Q ss_pred EEEEeccccccCC-------------------------CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCC
Q 025564 32 AWLLDQFGVLHDG-------------------------KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG 86 (251)
Q Consensus 32 ~~l~D~DGvL~~g-------------------------~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~G 86 (251)
+++||.|||+|+. .+++|.++++++.++..|+-+..+|=|- .....+.|+.++
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~--~~kA~~aLral~ 79 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNF--EDKAIKALRALD 79 (164)
T ss_pred cEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCc--hHHHHHHHHHhc
Confidence 6899999999973 1568999999999999998777777543 223457789999
Q ss_pred CCCccccceee
Q 025564 87 FDPSLFAGAIT 97 (251)
Q Consensus 87 l~~~~~~~Iit 97 (251)
+..+ |..++-
T Consensus 80 ~~~y-Fhy~Vi 89 (164)
T COG4996 80 LLQY-FHYIVI 89 (164)
T ss_pred hhhh-EEEEEe
Confidence 9988 665443
No 136
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=96.77 E-value=0.0027 Score=53.60 Aligned_cols=42 Identities=14% Similarity=0.057 Sum_probs=33.0
Q ss_pred CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCC
Q 025564 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF 87 (251)
Q Consensus 44 g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl 87 (251)
...+.||+.++|+.|+++|++++|+||+.+. .+...|++++.
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~--~i~~il~~~~~ 109 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDF--FVYPLLEGIVE 109 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHH--HHHHHHHhhCC
Confidence 4678999999999999999999999998742 23445666543
No 137
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=96.73 E-value=0.0023 Score=53.79 Aligned_cols=53 Identities=25% Similarity=0.448 Sum_probs=45.2
Q ss_pred CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (251)
Q Consensus 45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~ 101 (251)
.+++||+.++|++|+++ ++++++||++.. .+...|+++|+... |+.++++++.
T Consensus 96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~--~~~~~l~~~~l~~~-fd~i~~~~~~ 148 (224)
T TIGR02254 96 HQLLPGAFELMENLQQK-FRLYIVTNGVRE--TQYKRLRKSGLFPF-FDDIFVSEDA 148 (224)
T ss_pred CeeCccHHHHHHHHHhc-CcEEEEeCCchH--HHHHHHHHCCcHhh-cCEEEEcCcc
Confidence 47899999999999999 999999998743 35577899999988 7999988764
No 138
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=96.68 E-value=0.0018 Score=54.02 Aligned_cols=54 Identities=22% Similarity=0.205 Sum_probs=40.5
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHh-CCCCCccccceeechhhH
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS-LGFDPSLFAGAITSGELT 102 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~-~Gl~~~~~~~Iits~~~~ 102 (251)
.++||+.++|++|+++|++++++||+++.. ....+.. .++... |+.++++.+..
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~--~~~~~~~~~~l~~~-fd~v~~s~~~~ 138 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLH--TTFWPEEYPEVRAA-ADHIYLSQDLG 138 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhh--HHHHHhhchhHHHh-cCEEEEecccC
Confidence 578999999999999999999999987532 2222333 366666 68888887543
No 139
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=96.68 E-value=0.0016 Score=52.35 Aligned_cols=42 Identities=29% Similarity=0.327 Sum_probs=31.9
Q ss_pred cEEEEeccccccCCCc--------------------cCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564 31 KAWLLDQFGVLHDGKK--------------------PYPGAISTLEMLATTGAKMVVISNSSR 73 (251)
Q Consensus 31 ~~~l~D~DGvL~~g~~--------------------~~pGa~e~L~~L~~~G~~v~ivTN~s~ 73 (251)
+.++||+||||+.... .-||+.+||+.|.+ .+.++|.|++++
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~-~~ev~i~T~~~~ 62 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSK-HYEVVIWTSASE 62 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHH-HCEEEEE-SS-H
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHH-hceEEEEEeehh
Confidence 5789999999986442 46999999999955 599999999874
No 140
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=96.63 E-value=0.0048 Score=54.24 Aligned_cols=76 Identities=21% Similarity=0.234 Sum_probs=62.9
Q ss_pred CccEEEEeccccccCCCc----cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHH
Q 025564 29 RFKAWLLDQFGVLHDGKK----PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~~----~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~ 104 (251)
....++||+|-||.+... .-|.+.+.|..|++.|.-+++=|-+++ +-+...|++++++.. |+.|++.+..+..
T Consensus 121 ~phVIVfDlD~TLItd~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~--eHV~~sl~~~~L~~~-Fd~ii~~G~~~~~ 197 (297)
T PF05152_consen 121 PPHVIVFDLDSTLITDEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNR--EHVRHSLKELKLEGY-FDIIICGGNKAGE 197 (297)
T ss_pred CCcEEEEECCCcccccCCccccCChHHHHHHHHHHHcCCEEEEecCCCH--HHHHHHHHHhCCccc-cEEEEeCCccCCc
Confidence 567999999999997654 348999999999999998888887663 446788999999988 8999999987766
Q ss_pred HHh
Q 025564 105 YLL 107 (251)
Q Consensus 105 ~L~ 107 (251)
+-.
T Consensus 198 ~~~ 200 (297)
T PF05152_consen 198 YNS 200 (297)
T ss_pred CCc
Confidence 543
No 141
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=96.36 E-value=0.0055 Score=59.37 Aligned_cols=101 Identities=17% Similarity=0.154 Sum_probs=66.6
Q ss_pred CccEEEEecccccc----CCCccCccHHHHHHHHHHCC-CeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHH
Q 025564 29 RFKAWLLDQFGVLH----DGKKPYPGAISTLEMLATTG-AKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTH 103 (251)
Q Consensus 29 ~~~~~l~D~DGvL~----~g~~~~pGa~e~L~~L~~~G-~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~ 103 (251)
.+..+.+..||++. ....++||+.++|++|+++| ++++++||.++.. ....++++|++.. |..+. +.+ ..
T Consensus 363 g~~~~~v~~~~~~~g~i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~--a~~i~~~lgi~~~-f~~~~-p~~-K~ 437 (556)
T TIGR01525 363 GKTVVFVAVDGELLGVIALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSA--AEAVAAELGIDEV-HAELL-PED-KL 437 (556)
T ss_pred CcEEEEEEECCEEEEEEEecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHH--HHHHHHHhCCCee-eccCC-HHH-HH
Confidence 45667788887654 46789999999999999999 9999999987532 4567788999876 55542 222 22
Q ss_pred HHHhccCchhhhhcCCeEEEeccCCcccccccCCCc
Q 025564 104 QYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGL 139 (251)
Q Consensus 104 ~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~ 139 (251)
..+++... .|..+..+|.+..+...++..|+
T Consensus 438 ~~v~~l~~-----~~~~v~~vGDg~nD~~al~~A~v 468 (556)
T TIGR01525 438 AIVKELQE-----EGGVVAMVGDGINDAPALAAADV 468 (556)
T ss_pred HHHHHHHH-----cCCEEEEEECChhHHHHHhhCCE
Confidence 34443321 14567777765433334444443
No 142
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=96.31 E-value=0.0076 Score=51.53 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=38.8
Q ss_pred hHHHhcccCccEEEEeccccccC--------CCccCccHHHHHHHHHHCCCeEEEEeCCCCC
Q 025564 21 LRHIAETRRFKAWLLDQFGVLHD--------GKKPYPGAISTLEMLATTGAKMVVISNSSRR 74 (251)
Q Consensus 21 ~~~~~~~~~~~~~l~D~DGvL~~--------g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~ 74 (251)
+.++++.-+....+=.+.|-+|. ..+++||+.++|++|+++|++++|+||+++.
T Consensus 62 ~~~~~~~d~k~~~lk~lqg~iw~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~ 123 (220)
T TIGR01691 62 LHAEMDKDRKATPLKTLQGLIWRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVP 123 (220)
T ss_pred HHHHHHcCCCcchHHHHHHHHHHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 33444422233555566676664 2368999999999999999999999998853
No 143
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=96.30 E-value=0.0094 Score=52.86 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=30.7
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhC
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL 85 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~ 85 (251)
.++||+.++|++|+++|++++++||+++. .+...|+.+
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~--~~~~~l~~~ 181 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEK--AVSKIVNTL 181 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHh
Confidence 68999999999999999999999998743 233455554
No 144
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=96.25 E-value=0.0046 Score=59.64 Aligned_cols=98 Identities=15% Similarity=0.162 Sum_probs=62.0
Q ss_pred cEEEEeccccc----cCCCccCccHHHHHHHHHHCCC-eEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHHH
Q 025564 31 KAWLLDQFGVL----HDGKKPYPGAISTLEMLATTGA-KMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQY 105 (251)
Q Consensus 31 ~~~l~D~DGvL----~~g~~~~pGa~e~L~~L~~~G~-~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~ 105 (251)
..+.+-.||++ .....++||+.++|++|+++|+ +++++||.+.. .....++++|++.. |..+.. .+ ....
T Consensus 343 ~~~~v~~~~~~~g~i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~--~a~~i~~~lgi~~~-f~~~~p-~~-K~~~ 417 (536)
T TIGR01512 343 TIVHVARDGTYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRA--VAERVARELGIDEV-HAELLP-ED-KLEI 417 (536)
T ss_pred eEEEEEECCEEEEEEEEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHH--HHHHHHHHcCChhh-hhccCc-HH-HHHH
Confidence 33445555544 4567899999999999999999 99999997743 24567788999876 454432 22 2334
Q ss_pred HhccCchhhhhcCCeEEEeccCCcccccccCCC
Q 025564 106 LLRRDDAWFAALGRSCIHMTWSDRGAISLEGLG 138 (251)
Q Consensus 106 L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g 138 (251)
+++.... +..+..+|.+..+...++..|
T Consensus 418 i~~l~~~-----~~~v~~vGDg~nD~~al~~A~ 445 (536)
T TIGR01512 418 VKELREK-----YGPVAMVGDGINDAPALAAAD 445 (536)
T ss_pred HHHHHhc-----CCEEEEEeCCHHHHHHHHhCC
Confidence 4433221 456766776533333444444
No 145
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=96.22 E-value=0.0059 Score=55.58 Aligned_cols=61 Identities=25% Similarity=0.262 Sum_probs=45.5
Q ss_pred ccccccCC--------CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhC-C-------CCCccccceeechh
Q 025564 37 QFGVLHDG--------KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL-G-------FDPSLFAGAITSGE 100 (251)
Q Consensus 37 ~DGvL~~g--------~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~-G-------l~~~~~~~Iits~~ 100 (251)
.+|.+.+. ....||+.++|++|+++|++++++||+++.. ....|+.+ | +... |+.|++++.
T Consensus 167 ~~g~lk~~v~~dp~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~y--t~~im~~l~g~~~~~~~w~~y-FD~IIt~a~ 243 (343)
T TIGR02244 167 RKGSLKKKVMENPEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDY--TDKGMKYLLGPFLGEHDWRDY-FDVVIVDAR 243 (343)
T ss_pred ccchHHHHHHHCHHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHH--HHHHHHHhhCCcccccchHhh-CcEEEeCCC
Confidence 36777642 2558999999999999999999999998532 33556664 5 6677 687777664
No 146
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=96.20 E-value=0.011 Score=49.71 Aligned_cols=58 Identities=22% Similarity=0.074 Sum_probs=45.5
Q ss_pred CccEEEEeccccccCCC--------ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 29 RFKAWLLDQFGVLHDGK--------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~--------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
..+.+++|+|+||.+.. ..-|++.+||+.+.+ .+.++|-|.++... +...+..+|+..
T Consensus 20 ~kklLVLDLDeTLvh~~~~~~~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~~~y--a~~~l~~l~~~~ 85 (195)
T TIGR02245 20 GKKLLVLDIDYTLFDHRSPAETGEELMRPYLHEFLTSAYE-DYDIVIWSATSMKW--IEIKMTELGVLT 85 (195)
T ss_pred CCcEEEEeCCCceEcccccCCCceEEeCCCHHHHHHHHHh-CCEEEEEecCCHHH--HHHHHHHhcccC
Confidence 56899999999999752 235999999999998 79999999877432 345677777643
No 147
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=96.13 E-value=0.015 Score=50.20 Aligned_cols=53 Identities=21% Similarity=0.287 Sum_probs=42.6
Q ss_pred CCccCccHHHHHHHH--HHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeech
Q 025564 44 GKKPYPGAISTLEML--ATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (251)
Q Consensus 44 g~~~~pGa~e~L~~L--~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~ 99 (251)
+.++-||..++++.+ ++.|..++|+|.+... -+...|++.|+... |.+|+|..
T Consensus 69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~--fI~~iL~~~gl~~~-f~~I~TNp 123 (234)
T PF06888_consen 69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANSF--FIETILEHHGLRDC-FSEIFTNP 123 (234)
T ss_pred cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHh--HHHHHHHhCCCccc-cceEEeCC
Confidence 456779999999999 4579999999987643 25678899999887 68888764
No 148
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=96.12 E-value=0.011 Score=59.22 Aligned_cols=56 Identities=23% Similarity=0.150 Sum_probs=42.6
Q ss_pred CccEEEEeccccccCCC------ccCccHHHHHHHHHH-CCCeEEEEeCCCCCchhHHHHhHhCC
Q 025564 29 RFKAWLLDQFGVLHDGK------KPYPGAISTLEMLAT-TGAKMVVISNSSRRASTTIDKLKSLG 86 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~------~~~pGa~e~L~~L~~-~G~~v~ivTN~s~~~~~~~~~L~~~G 86 (251)
+.+.++||+||||.... .+-+.+.++|++|.+ .|..++++|+.+ ...+.+.+..++
T Consensus 491 ~~rLi~~D~DGTL~~~~~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~--~~~l~~~~~~~~ 553 (726)
T PRK14501 491 SRRLLLLDYDGTLVPFAPDPELAVPDKELRDLLRRLAADPNTDVAIISGRD--RDTLERWFGDLP 553 (726)
T ss_pred cceEEEEecCccccCCCCCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCC--HHHHHHHhCCCC
Confidence 56899999999999632 355799999999999 599999999765 333545554443
No 149
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=96.09 E-value=0.015 Score=56.44 Aligned_cols=100 Identities=17% Similarity=0.166 Sum_probs=64.5
Q ss_pred CccEEEEecccccc----CCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHH
Q 025564 29 RFKAWLLDQFGVLH----DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104 (251)
Q Consensus 29 ~~~~~l~D~DGvL~----~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~ 104 (251)
....+.++.||++. -..++.||+.++|++|+++|++++++||..+.. ....++++|++. +..+.. . ....
T Consensus 384 g~~~~~~~~~~~~~g~~~~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~--a~~ia~~lgi~~--~~~~~p-~-~K~~ 457 (562)
T TIGR01511 384 GSTSVLVAVNGELAGVFALEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKT--AKAVAKELGINV--RAEVLP-D-DKAA 457 (562)
T ss_pred CCEEEEEEECCEEEEEEEecccccHHHHHHHHHHHHcCCeEEEEcCCCHHH--HHHHHHHcCCcE--EccCCh-H-HHHH
Confidence 45668888888763 467899999999999999999999999987432 446677889972 233322 1 1222
Q ss_pred HHhccCchhhhhcCCeEEEeccCCcccccccCCCc
Q 025564 105 YLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGL 139 (251)
Q Consensus 105 ~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~ 139 (251)
.+++.... +.++..+|.+..+...++..|+
T Consensus 458 ~v~~l~~~-----~~~v~~VGDg~nD~~al~~A~v 487 (562)
T TIGR01511 458 LIKELQEK-----GRVVAMVGDGINDAPALAQADV 487 (562)
T ss_pred HHHHHHHc-----CCEEEEEeCCCccHHHHhhCCE
Confidence 33322111 4677777865443344555543
No 150
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=96.05 E-value=0.0026 Score=52.77 Aligned_cols=49 Identities=22% Similarity=0.332 Sum_probs=38.7
Q ss_pred ccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 39 GvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
|.+.....+.|++.++|+.|+++|+++.++|+.+... .....+.+|+..
T Consensus 120 ~~~~~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~--a~~~~~~lgi~~ 168 (215)
T PF00702_consen 120 GLFGLRDPLRPGAKEALQELKEAGIKVAILTGDNEST--ASAIAKQLGIFD 168 (215)
T ss_dssp EEEEEEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHH--HHHHHHHTTSCS
T ss_pred EEEeecCcchhhhhhhhhhhhccCcceeeeecccccc--cccccccccccc
Confidence 4445667889999999999999999999999866432 445667899953
No 151
>PLN03017 trehalose-phosphatase
Probab=96.03 E-value=0.0091 Score=54.74 Aligned_cols=59 Identities=19% Similarity=0.107 Sum_probs=42.5
Q ss_pred chhccCChHHHhccc-C-ccEEEEecccccc---C-CC--ccCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564 14 LFQTLNGLRHIAETR-R-FKAWLLDQFGVLH---D-GK--KPYPGAISTLEMLATTGAKMVVISNSSR 73 (251)
Q Consensus 14 ~~~~~~~~~~~~~~~-~-~~~~l~D~DGvL~---~-g~--~~~pGa~e~L~~L~~~G~~v~ivTN~s~ 73 (251)
.|.-++.+.++++.- . --++++|+||||. + .. .+-|+..++|++|. ++.+++|+|..+.
T Consensus 93 ~psal~~~~~~~~~~~~k~~llflD~DGTL~Piv~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~ 159 (366)
T PLN03017 93 HPSALEMFEQIMEASRGKQIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCI 159 (366)
T ss_pred CChHHHHHHHHHHHhcCCCeEEEEecCCcCcCCcCCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCH
Confidence 444455555555311 2 2478889999999 3 23 46789999999999 7899999998764
No 152
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=96.03 E-value=0.01 Score=49.25 Aligned_cols=33 Identities=27% Similarity=0.559 Sum_probs=24.9
Q ss_pred ccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564 41 LHDGKKPYPGAISTLEMLATTGAKMVVISNSSR 73 (251)
Q Consensus 41 L~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~ 73 (251)
++.+.+|+|||.|+|++|.+.|....++|..+.
T Consensus 68 ~f~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~ 100 (191)
T PF06941_consen 68 FFSNLPPIPGAVEALKKLRDKGHEIVIITARPP 100 (191)
T ss_dssp TTTT--B-TTHHHHHHHHHTSTTEEEEEEE-SS
T ss_pred hhcCCCccHHHHHHHHHHHHcCCcEEEEEecCc
Confidence 566778999999999999999988888887653
No 153
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=95.85 E-value=0.018 Score=58.57 Aligned_cols=75 Identities=24% Similarity=0.289 Sum_probs=49.6
Q ss_pred ccccCCCchhc-cCChHHHhcccCccEEEEeccccccCCC----ccCccHHHHHHHH-HHCCCeEEEEeCCCCCchhHHH
Q 025564 7 VQSNDPHLFQT-LNGLRHIAETRRFKAWLLDQFGVLHDGK----KPYPGAISTLEML-ATTGAKMVVISNSSRRASTTID 80 (251)
Q Consensus 7 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~DGvL~~g~----~~~pGa~e~L~~L-~~~G~~v~ivTN~s~~~~~~~~ 80 (251)
+.+.+|..+.. .+.+.+-....+.+++++|+||||.... .+-|+..++|++| ++.|..++++|..++ +.+.+
T Consensus 572 ~~~~~~~~~~l~~~~i~~~y~~~~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~--~~L~~ 649 (854)
T PLN02205 572 VVALDPNFRKLSMEHIVSAYKRTTTRAILLDYDGTLMPQASIDKSPSSKSIDILNTLCRDKNNMVFIVSARSR--KTLAD 649 (854)
T ss_pred cccccccccccCHHHHHHHHHhhcCeEEEEecCCcccCCccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCH--HHHHH
Confidence 44555553332 2233322222256899999999999544 5667999999998 777999999997653 34555
Q ss_pred HhH
Q 025564 81 KLK 83 (251)
Q Consensus 81 ~L~ 83 (251)
.+.
T Consensus 650 ~f~ 652 (854)
T PLN02205 650 WFS 652 (854)
T ss_pred HhC
Confidence 553
No 154
>PLN02151 trehalose-phosphatase
Probab=95.84 E-value=0.016 Score=52.98 Aligned_cols=58 Identities=22% Similarity=0.167 Sum_probs=41.3
Q ss_pred hhccCChHHHhccc--CccEEEEecccccc----C--CCccCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564 15 FQTLNGLRHIAETR--RFKAWLLDQFGVLH----D--GKKPYPGAISTLEMLATTGAKMVVISNSSR 73 (251)
Q Consensus 15 ~~~~~~~~~~~~~~--~~~~~l~D~DGvL~----~--g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~ 73 (251)
|.-+..+.++++.- +--++++|+||||. + ...+-|+..++|+.|. .+.+++|+|..+.
T Consensus 81 p~a~~~~~~~~~~~~~~~~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL~~La-~~~~vaIvSGR~~ 146 (354)
T PLN02151 81 PSALNMFEEILHKSEGKQIVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVRKLA-KCFPTAIVSGRCR 146 (354)
T ss_pred ChHHHHHHHHHHhhcCCceEEEEecCccCCCCCCCcccccCCHHHHHHHHHHh-cCCCEEEEECCCH
Confidence 34444555555521 12478999999999 2 3356789999999999 4579999997653
No 155
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=95.83 E-value=0.038 Score=43.28 Aligned_cols=89 Identities=7% Similarity=0.036 Sum_probs=60.9
Q ss_pred cEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHH-HHHhcc
Q 025564 31 KAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTH-QYLLRR 109 (251)
Q Consensus 31 ~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~-~~L~~~ 109 (251)
+...-++++|+..|.++++.+.+.++.|++. ..++++|.....+ +.+.++-.|++.+ .....++.... ..+.+.
T Consensus 15 d~~~~~v~~tiatgGklf~ev~e~iqeL~d~-V~i~IASgDr~gs--l~~lae~~gi~~~--rv~a~a~~e~K~~ii~eL 89 (152)
T COG4087 15 DSKAGKVLYTIATGGKLFSEVSETIQELHDM-VDIYIASGDRKGS--LVQLAEFVGIPVE--RVFAGADPEMKAKIIREL 89 (152)
T ss_pred eeecceEEEEEccCcEEcHhhHHHHHHHHHh-heEEEecCCcchH--HHHHHHHcCCcee--eeecccCHHHHHHHHHHh
Confidence 5667789999999999999999999999999 9999999765433 4455566888764 23333443333 344444
Q ss_pred CchhhhhcCCeEEEeccCCc
Q 025564 110 DDAWFAALGRSCIHMTWSDR 129 (251)
Q Consensus 110 ~~~~~~~~g~~~~~~g~~~~ 129 (251)
..+ +.++..+|.|..
T Consensus 90 kk~-----~~k~vmVGnGaN 104 (152)
T COG4087 90 KKR-----YEKVVMVGNGAN 104 (152)
T ss_pred cCC-----CcEEEEecCCcc
Confidence 332 356666676543
No 156
>PLN02382 probable sucrose-phosphatase
Probab=95.69 E-value=0.022 Score=53.27 Aligned_cols=57 Identities=11% Similarity=-0.067 Sum_probs=39.7
Q ss_pred EEEEeccccccCCC--ccC--ccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 32 AWLLDQFGVLHDGK--KPY--PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 32 ~~l~D~DGvL~~g~--~~~--pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
.++.||||||.++. +-+ +...+.+++++++|..++++|..+ ...+.+.++.+++...
T Consensus 11 lI~sDLDGTLL~~~~~~~~s~~~~~~l~~~~~~~gi~fv~aTGR~--~~~~~~l~~~~~l~~p 71 (413)
T PLN02382 11 MIVSDLDHTMVDHHDPENLSLLRFNALWEAEYRHDSLLVFSTGRS--PTLYKELRKEKPLLTP 71 (413)
T ss_pred EEEEcCCCcCcCCCCccchhHHHHHHHHHHhhcCCeeEEEEcCCC--HHHHHHHHHhCCCCCC
Confidence 67889999999763 223 244445588999999999999755 3345555566776543
No 157
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=95.63 E-value=0.0096 Score=41.73 Aligned_cols=25 Identities=16% Similarity=0.032 Sum_probs=20.9
Q ss_pred EecCCCHHHHHHHHHhcCCc--eEEEE
Q 025564 223 WMGKPDKVVQLLCSLSSSVI--ILFLI 247 (251)
Q Consensus 223 ~~GKP~~~~~~~a~~~l~~~--~~~~~ 247 (251)
++|||+|.+|+.|+++++++ ..+||
T Consensus 1 ~~gKP~p~~~~~a~~~~~~~~~~~~~V 27 (75)
T PF13242_consen 1 VCGKPSPGMLEQALKRLGVDPSRCVMV 27 (75)
T ss_dssp SCSTTSHHHHHHHHHHHTSGGGGEEEE
T ss_pred CCCCCcHHHHHHHHHHcCCCHHHEEEE
Confidence 47999999999999999874 45555
No 158
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=95.52 E-value=0.029 Score=49.63 Aligned_cols=49 Identities=10% Similarity=0.041 Sum_probs=39.2
Q ss_pred CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccce
Q 025564 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGA 95 (251)
Q Consensus 44 g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~I 95 (251)
...+.||+.++++.|+++|++++|+|++.+. .+...|+++|+... +..|
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~--~Ie~vL~~lgl~~~-~~~I 167 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGN--VLEEVLRQAGVYHP-NVKV 167 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHH--HHHHHHHHcCCCCc-CceE
Confidence 5678999999999999999999999988753 35677888888644 2444
No 159
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=95.51 E-value=0.016 Score=48.28 Aligned_cols=76 Identities=11% Similarity=0.067 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeC-chHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceEEEEe
Q 025564 172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVM-PGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIILFLIF 248 (251)
Q Consensus 172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~-~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~ 248 (251)
..+..+++.+.++|.++ ++||........ .+. ...+...++.. +......+||+|.+|+.+++++|++|-=.+|
T Consensus 87 ~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~---~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~ 163 (199)
T PRK09456 87 PEVIAIMHKLREQGHRVVVLSNTNRLHTTF---WPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAVF 163 (199)
T ss_pred HHHHHHHHHHHhCCCcEEEEcCCchhhHHH---HHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeEE
Confidence 45677888777788876 667765322110 000 11233344432 4445567899999999999999998865555
Q ss_pred ec
Q 025564 249 LD 250 (251)
Q Consensus 249 ~~ 250 (251)
+|
T Consensus 164 vg 165 (199)
T PRK09456 164 FD 165 (199)
T ss_pred eC
Confidence 53
No 160
>PTZ00445 p36-lilke protein; Provisional
Probab=95.24 E-value=0.035 Score=47.02 Aligned_cols=78 Identities=12% Similarity=0.027 Sum_probs=53.0
Q ss_pred ChHHHhcccCccEEEEeccccccC-----CCc-----------cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhH
Q 025564 20 GLRHIAETRRFKAWLLDQFGVLHD-----GKK-----------PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK 83 (251)
Q Consensus 20 ~~~~~~~~~~~~~~l~D~DGvL~~-----g~~-----------~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~ 83 (251)
.+-+++....++++++|+|-||.. ..+ +-|...+++++|++.|++++|+|=+....
T Consensus 33 ~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~-------- 104 (219)
T PTZ00445 33 KFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKEL-------- 104 (219)
T ss_pred HHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhh--------
Confidence 344556656899999999999876 222 46788999999999999999999654210
Q ss_pred hCCCCCccccceeechhhHHHHHhc
Q 025564 84 SLGFDPSLFAGAITSGELTHQYLLR 108 (251)
Q Consensus 84 ~~Gl~~~~~~~Iits~~~~~~~L~~ 108 (251)
..-+.. +..|++++....-|+.
T Consensus 105 -~~~~~~--~~~Isg~~li~~~lk~ 126 (219)
T PTZ00445 105 -IPSENR--PRYISGDRMVEAALKK 126 (219)
T ss_pred -ccccCC--cceechHHHHHHHHHh
Confidence 111222 4556666666666653
No 161
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=95.00 E-value=0.018 Score=50.03 Aligned_cols=65 Identities=22% Similarity=0.199 Sum_probs=39.5
Q ss_pred cEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeech
Q 025564 31 KAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (251)
Q Consensus 31 ~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~ 99 (251)
..++.|+||||.++.. ...-..+.++...+.+..++++|. |+.+.+.+.+++.++... +.++|+.
T Consensus 3 ~ll~sDlD~Tl~~~~~~~~~~l~~~l~~~~~~~~~~v~~TG--Rs~~~~~~~~~~~~l~~P--d~~I~sv 68 (247)
T PF05116_consen 3 RLLASDLDGTLIDGDDEALARLEELLEQQARPEILFVYVTG--RSLESVLRLLREYNLPQP--DYIITSV 68 (247)
T ss_dssp EEEEEETBTTTBHCHHHHHHHHHHHHHHHHCCGEEEEEE-S--S-HHHHHHHHHHCT-EE---SEEEETT
T ss_pred EEEEEECCCCCcCCCHHHHHHHHHHHHHhhCCCceEEEECC--CCHHHHHHHHHhCCCCCC--CEEEecC
Confidence 5789999999994333 222333333323356777788885 445567788888888643 6777764
No 162
>PLN02580 trehalose-phosphatase
Probab=94.99 E-value=0.05 Score=50.28 Aligned_cols=65 Identities=20% Similarity=0.146 Sum_probs=44.4
Q ss_pred hhccCChHHHhccc--CccEEEEeccccccC------CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHh
Q 025564 15 FQTLNGLRHIAETR--RFKAWLLDQFGVLHD------GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKL 82 (251)
Q Consensus 15 ~~~~~~~~~~~~~~--~~~~~l~D~DGvL~~------g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L 82 (251)
|.-++++.++.+.. +-.+++||.||||.. ...+-|++.++|+.|.+. .+++|+|..+ .+.+.+.+
T Consensus 102 p~al~~~~~~~~~~~~k~~~LfLDyDGTLaPIv~~Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~--~~~L~~~l 174 (384)
T PLN02580 102 PSALTSFEQIANFAKGKKIALFLDYDGTLSPIVDDPDRALMSDAMRSAVKNVAKY-FPTAIISGRS--RDKVYELV 174 (384)
T ss_pred cHHHHHHHHHHHHhhcCCeEEEEecCCccCCCCCCcccccCCHHHHHHHHHHhhC-CCEEEEeCCC--HHHHHHHh
Confidence 44445555555321 234788999999963 335678999999999988 5899999755 33454444
No 163
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=94.76 E-value=0.06 Score=46.45 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=34.7
Q ss_pred CccEEEEeccccccCC------CccCccHHHHHHHHHHC-CCeEEEEeCCC
Q 025564 29 RFKAWLLDQFGVLHDG------KKPYPGAISTLEMLATT-GAKMVVISNSS 72 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g------~~~~pGa~e~L~~L~~~-G~~v~ivTN~s 72 (251)
+..+++||.||||..- ..+-|++.++|+.|.+. +..++|+|..+
T Consensus 2 ~~~~l~lD~DGTL~~~~~~p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~ 52 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVPDPDAAVVSDRLLTILQKLAARPHNAIWIISGRK 52 (244)
T ss_pred CcEEEEEecCccccCCcCCCcccCCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 4578999999999853 23568999999999776 45678999764
No 164
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=94.71 E-value=0.11 Score=43.55 Aligned_cols=66 Identities=18% Similarity=0.172 Sum_probs=49.7
Q ss_pred ChHHHhcccCccEEEEeccccccC--------------------------------------------------------
Q 025564 20 GLRHIAETRRFKAWLLDQFGVLHD-------------------------------------------------------- 43 (251)
Q Consensus 20 ~~~~~~~~~~~~~~l~D~DGvL~~-------------------------------------------------------- 43 (251)
.+.++.. +.++|+||+|-|+..
T Consensus 8 e~~~~~~--~~~aVcFDvDSTvi~eEgIdelA~~~G~~~~Va~~T~rAMng~~~F~eaL~~Rl~llqp~~~qv~~~v~~~ 85 (227)
T KOG1615|consen 8 ELAKLWR--SADAVCFDVDSTVIQEEGIDELAAYCGVGEAVAEVTRRAMNGEADFQEALAARLSLLQPLQVQVEQFVIKQ 85 (227)
T ss_pred HHHHHHH--hcCeEEEecCcchhHHhhHHHHHHHhCchHHHHHHHHHHhCCCCcHHHHHHHHHHHhcccHHHHHHHHhcC
Confidence 4567777 889999999999975
Q ss_pred CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 44 g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
-.++-||+.|+..+|+++|.+++++|..=+.- +.-.-..+|++-
T Consensus 86 k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~--i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 86 KPTLTPGIRELVSRLHARGTQVYLISGGFRQL--IEPVAEQLGIPK 129 (227)
T ss_pred CCccCCCHHHHHHHHHHcCCeEEEEcCChHHH--HHHHHHHhCCcH
Confidence 12467999999999999999999999865432 112223477763
No 165
>PRK11590 hypothetical protein; Provisional
Probab=94.44 E-value=0.08 Score=44.57 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=36.3
Q ss_pred ccCccHHHHH-HHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeech
Q 025564 46 KPYPGAISTL-EMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (251)
Q Consensus 46 ~~~pGa~e~L-~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~ 99 (251)
.++||+.+.| +.|+++|++++++||+++.. +...++.+|+... ++++.+.
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~--~~~il~~l~~~~~--~~~i~t~ 145 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPL--VEQVYFDTPWLPR--VNLIASQ 145 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHH--HHHHHHHcccccc--CceEEEE
Confidence 5689999999 67899999999999987532 3456677886432 4555444
No 166
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=94.42 E-value=0.059 Score=46.12 Aligned_cols=74 Identities=23% Similarity=0.291 Sum_probs=47.3
Q ss_pred HHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHH--hC-CCeEEecCCCHHHHHHHHHhcCCce-E-EEEe
Q 025564 175 EKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEK--LG-GEVRWMGKPDKVVQLLCSLSSSVII-L-FLIF 248 (251)
Q Consensus 175 ~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~--~g-~~~~~~GKP~~~~~~~a~~~l~~~~-~-~~~~ 248 (251)
++.++.+..+|.|+ ++||.+.-...-. .=..+.+...+.. .| ...+.-|||+|.+|..|++++|..+ . .+||
T Consensus 98 ~kLv~~L~~~gip~alat~s~~~~~~~k--~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~~~k~lVf 175 (222)
T KOG2914|consen 98 EKLVNHLKNNGIPVALATSSTSASFELK--ISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPPPSKCLVF 175 (222)
T ss_pred HHHHHHHHhCCCCeeEEecCCcccHHHH--HHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCCccceEEE
Confidence 67777777889998 6676644322110 1122334444443 22 3447889999999999999999888 3 4555
Q ss_pred ec
Q 025564 249 LD 250 (251)
Q Consensus 249 ~~ 250 (251)
-|
T Consensus 176 ed 177 (222)
T KOG2914|consen 176 ED 177 (222)
T ss_pred CC
Confidence 44
No 167
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=94.30 E-value=0.42 Score=38.86 Aligned_cols=65 Identities=15% Similarity=0.080 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHH-HHhCCCeE-EecCCCHHHHHHHHHhcCCce--EE
Q 025564 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKF-EKLGGEVR-WMGKPDKVVQLLCSLSSSVII--LF 245 (251)
Q Consensus 171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~-~~~g~~~~-~~GKP~~~~~~~a~~~l~~~~--~~ 245 (251)
|+.+..+++.+..+|.++ ++||.+. ...+..+ +..+.... -.+||+|.+|+.+++++++++ ++
T Consensus 45 ~pgv~e~L~~Lk~~g~~l~I~Sn~~~------------~~~~~~~~~~~gl~~~~~~~KP~p~~~~~~l~~~~~~~~~~l 112 (170)
T TIGR01668 45 YPALRDWIEELKAAGRKLLIVSNNAG------------EQRAKAVEKALGIPVLPHAVKPPGCAFRRAHPEMGLTSEQVA 112 (170)
T ss_pred ChhHHHHHHHHHHcCCEEEEEeCCch------------HHHHHHHHHHcCCEEEcCCCCCChHHHHHHHHHcCCCHHHEE
Confidence 566677888877788885 6677652 1122233 33444332 246999999999999999865 44
Q ss_pred EE
Q 025564 246 LI 247 (251)
Q Consensus 246 ~~ 247 (251)
||
T Consensus 113 ~I 114 (170)
T TIGR01668 113 VV 114 (170)
T ss_pred EE
Confidence 44
No 168
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=94.25 E-value=0.024 Score=48.35 Aligned_cols=68 Identities=22% Similarity=0.211 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCCCcEEEc-cCCccccccCceeeCchHHHHHHHH-hCCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564 174 LEKILEICASKKIPMVVA-NPDYVTVEARALRVMPGTLASKFEK-LGGEVRWMGKPDKVVQLLCSLSSSVIIL 244 (251)
Q Consensus 174 l~~a~~~~~~~g~~li~~-n~D~~~~~~~~~~~~~G~i~~~~~~-~g~~~~~~GKP~~~~~~~a~~~l~~~~~ 244 (251)
....++.+..+|.++.++ |..+... .. .+..-.+...++. ..+..+.-|||+|++|..|+++||+.|-
T Consensus 91 v~~~l~~L~~~~i~~avaS~s~~~~~-~~--~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~ 160 (221)
T COG0637 91 VVELLEQLKARGIPLAVASSSPRRAA-ER--VLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPE 160 (221)
T ss_pred HHHHHHHHHhcCCcEEEecCChHHHH-HH--HHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChH
Confidence 366777766777877554 3332111 11 2222233444554 2455566679999999999999998875
No 169
>PRK06769 hypothetical protein; Validated
Probab=94.17 E-value=0.16 Score=41.43 Aligned_cols=69 Identities=10% Similarity=0.052 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHhCCCeE-----------EecCCCHHHHHHHHHh
Q 025564 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGEVR-----------WMGKPDKVVQLLCSLS 238 (251)
Q Consensus 171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~g~~~~-----------~~GKP~~~~~~~a~~~ 238 (251)
|+.....++.+.++|.++ |+||......... ..-.+...++..|-... ...||+|.+|..++++
T Consensus 30 ~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~----~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~ 105 (173)
T PRK06769 30 FPFTKASLQKLKANHIKIFSFTNQPGIADGIA----TIADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEK 105 (173)
T ss_pred CCCHHHHHHHHHHCCCEEEEEECCchhcCCcC----CHHHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHH
Confidence 355677888877789876 6777654221111 01123333443333221 3469999999999999
Q ss_pred cCCce
Q 025564 239 SSVII 243 (251)
Q Consensus 239 l~~~~ 243 (251)
+++++
T Consensus 106 l~~~p 110 (173)
T PRK06769 106 HGLDL 110 (173)
T ss_pred cCCCH
Confidence 99866
No 170
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=94.14 E-value=0.034 Score=45.95 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceEEEEe
Q 025564 172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIILFLIF 248 (251)
Q Consensus 172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~ 248 (251)
+....+++.+.++|.++ ++||.+...... .+..-.+...++.. +.+.+-.+||+|.+|+.+++++|++|-=.++
T Consensus 95 ~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~---~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~ 170 (198)
T TIGR01428 95 PDVPAGLRALKERGYRLAILSNGSPAMLKS---LVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLF 170 (198)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCCHHHHHH---HHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEE
Confidence 34467777777778876 677766543221 11111133344432 3344456899999999999999988754333
No 171
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=94.12 E-value=0.016 Score=46.94 Aligned_cols=50 Identities=20% Similarity=0.306 Sum_probs=38.8
Q ss_pred cCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564 42 HDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (251)
Q Consensus 42 ~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~ 101 (251)
+....++||+.++|+ +++++||+++.. +...++++|+... |+.|++++++
T Consensus 86 ~~~~~~~~g~~~~L~-------~~~i~Tn~~~~~--~~~~l~~~~l~~~-fd~v~~~~~~ 135 (175)
T TIGR01493 86 YKNLPPWPDSAAALA-------RVAILSNASHWA--FDQFAQQAGLPWY-FDRAFSVDTV 135 (175)
T ss_pred HhcCCCCCchHHHHH-------HHhhhhCCCHHH--HHHHHHHCCCHHH-HhhhccHhhc
Confidence 345568999999998 378999987532 4567889999988 6888877754
No 172
>PRK10671 copA copper exporting ATPase; Provisional
Probab=93.77 E-value=0.11 Score=52.96 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=64.5
Q ss_pred ccEEEEecccc----ccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHHH
Q 025564 30 FKAWLLDQFGV----LHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQY 105 (251)
Q Consensus 30 ~~~~l~D~DGv----L~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~ 105 (251)
...+.+-.||. +...+.+.||+.+.|++|++.|++++++|+.+... ....++++|++.. +..+. +.+ ....
T Consensus 630 ~~~v~va~~~~~~g~~~l~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~--a~~ia~~lgi~~~-~~~~~-p~~-K~~~ 704 (834)
T PRK10671 630 ATPVLLAVDGKAAALLAIRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTT--ANAIAKEAGIDEV-IAGVL-PDG-KAEA 704 (834)
T ss_pred CeEEEEEECCEEEEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCHHH--HHHHHHHcCCCEE-EeCCC-HHH-HHHH
Confidence 44566666665 45677899999999999999999999999976432 4456678999765 44443 221 3334
Q ss_pred HhccCchhhhhcCCeEEEeccCCcccccccCCCc
Q 025564 106 LLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGL 139 (251)
Q Consensus 106 L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~ 139 (251)
+++.... |..+..+|.+..+...++..|+
T Consensus 705 i~~l~~~-----~~~v~~vGDg~nD~~al~~Agv 733 (834)
T PRK10671 705 IKRLQSQ-----GRQVAMVGDGINDAPALAQADV 733 (834)
T ss_pred HHHHhhc-----CCEEEEEeCCHHHHHHHHhCCe
Confidence 4433221 4677777865433334555544
No 173
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=93.60 E-value=0.031 Score=48.93 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564 172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL 244 (251)
Q Consensus 172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~ 244 (251)
......++.+..+|.++ |+||........ .+..-.+...+... +.+....+||+|.+|..+++++|+.+-
T Consensus 112 pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~---~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~ 183 (260)
T PLN03243 112 PGSREFVQALKKHEIPIAVASTRPRRYLER---AIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPE 183 (260)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCcCHHHHHH---HHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChH
Confidence 34467777777788886 667765432221 11111233445542 455556799999999999999999874
No 174
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=93.52 E-value=0.046 Score=47.22 Aligned_cols=68 Identities=18% Similarity=0.046 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564 173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII 243 (251)
Q Consensus 173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~ 243 (251)
.+...++++.++|.++ |+||........ .+..-.+...+... +.+....+||+|.+|+.+++++++++
T Consensus 112 gv~e~L~~L~~~g~~l~I~Tn~~~~~~~~---~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~ 181 (248)
T PLN02770 112 GLYKLKKWIEDRGLKRAAVTNAPRENAEL---MISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSK 181 (248)
T ss_pred cHHHHHHHHHHcCCeEEEEeCCCHHHHHH---HHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCCh
Confidence 3466777766788886 777765543221 11111123334432 44444568999999999999999876
No 175
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=93.51 E-value=0.1 Score=43.11 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=34.8
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
.++||+.++|+.++++|.+++++||+.... +...++++|++..
T Consensus 87 ~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~--v~~~~~~lg~~~~ 129 (202)
T TIGR01490 87 ILYPEARDLIRWHKAEGHTIVLVSASLTIL--VKPLARILGIDNA 129 (202)
T ss_pred hccHHHHHHHHHHHHCCCEEEEEeCCcHHH--HHHHHHHcCCcce
Confidence 578999999999999999999999987432 4455677888754
No 176
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=93.31 E-value=0.11 Score=44.30 Aligned_cols=42 Identities=26% Similarity=0.329 Sum_probs=28.9
Q ss_pred HHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564 54 TLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (251)
Q Consensus 54 ~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~ 100 (251)
+|-.|++++ .++.||+.+.. ..+.|+++|++.- |+.|+.-+.
T Consensus 108 lLL~l~~r~--k~~FTNa~k~H--A~r~Lk~LGieDc-Fegii~~e~ 149 (244)
T KOG3109|consen 108 LLLSLKKRR--KWIFTNAYKVH--AIRILKKLGIEDC-FEGIICFET 149 (244)
T ss_pred HHHhCcccc--EEEecCCcHHH--HHHHHHHhChHHh-ccceeEeec
Confidence 444444332 78889988643 4478999999998 787776553
No 177
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=93.16 E-value=0.062 Score=43.34 Aligned_cols=74 Identities=19% Similarity=0.135 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHH-hCCCeEEecCCCHHHHHHHHHhcCCceEEEEee
Q 025564 172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEK-LGGEVRWMGKPDKVVQLLCSLSSSVIILFLIFL 249 (251)
Q Consensus 172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~-~g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~~ 249 (251)
+.+...++.+.++|.++ ++||..... . . ....-.+...++. ........+||+|.+|+.+++++++++-=.+++
T Consensus 88 ~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~-~--~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v 163 (183)
T TIGR01509 88 PGVEPLLEALRARGKKLALLTNSPRDH-A-V--LVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLFV 163 (183)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCchHH-H-H--HHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEEE
Confidence 34466777766778775 677766543 1 1 0000112223333 123334578999999999999999876545544
No 178
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=93.13 E-value=0.28 Score=50.25 Aligned_cols=60 Identities=18% Similarity=0.442 Sum_probs=46.2
Q ss_pred cccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564 38 FGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (251)
Q Consensus 38 DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~ 100 (251)
=|.+.-.+++.||+.++++.|+++|+++.++|+....+ .....+++|+... ++.++++.+
T Consensus 520 lGli~l~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~~t--A~~ia~~~Gi~~~-~~~~v~g~~ 579 (884)
T TIGR01522 520 LGLVGINDPPRPGVKEAVTTLITGGVRIIMITGDSQET--AVSIARRLGMPSK-TSQSVSGEK 579 (884)
T ss_pred EEEEeccCcchhHHHHHHHHHHHCCCeEEEECCCCHHH--HHHHHHHcCCCCC-CCceeEhHH
Confidence 36677788999999999999999999999999987433 3345577899765 355655543
No 179
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=92.95 E-value=0.065 Score=45.19 Aligned_cols=69 Identities=20% Similarity=0.267 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564 172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII 243 (251)
Q Consensus 172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~ 243 (251)
+.+...++.+.++|.++ +++|........ .+....+...+... +.+....|||+|.+|+.+++++|+.+
T Consensus 95 ~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~---~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 165 (222)
T PRK10826 95 PGVREALALCKAQGLKIGLASASPLHMLEA---VLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDP 165 (222)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCcHHHHHH---HHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCH
Confidence 45577777777789886 556644332211 11112233333332 33444579999999999999999976
No 180
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=92.86 E-value=0.3 Score=44.80 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=39.8
Q ss_pred CccEEEEeccccccCCCccCc---cHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhH
Q 025564 29 RFKAWLLDQFGVLHDGKKPYP---GAISTLEMLATTGAKMVVISNSSR-RASTTIDKLK 83 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~~~~p---Ga~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~ 83 (251)
+.+.+-||-|+|||....-+. -+..-|-.|-++|++++|+|.++- ..+.+.++|.
T Consensus 146 ~L~LvTFDgDvTLY~DG~sl~~d~pvi~~ii~LL~~gv~VgIVTAAGY~~a~kY~~RL~ 204 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYEDGASLEPDNPVIPRIIKLLRRGVKVGIVTAAGYPGAEKYEERLH 204 (408)
T ss_pred CceEEEEcCCcccccCCCCCCCCchHHHHHHHHHhcCCeEEEEeCCCCCChHHHHHHHH
Confidence 457999999999998765542 333444455678999999999873 4455777765
No 181
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=92.83 E-value=0.078 Score=44.42 Aligned_cols=70 Identities=10% Similarity=0.002 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564 172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL 244 (251)
Q Consensus 172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~ 244 (251)
+.....++.+.++|.++ ++||.+...... .+..-.+...++.. +......+||+|.+|+.+++++|+++-
T Consensus 97 ~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~---~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~ 168 (221)
T TIGR02253 97 PGVRDTLMELRESGYRLGIITDGLPVKQWE---KLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPE 168 (221)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCchHHHHH---HHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChh
Confidence 34567777777778875 667766432211 11111233444432 344455689999999999999998763
No 182
>PLN02811 hydrolase
Probab=92.75 E-value=0.13 Score=43.44 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCC--eEEecCCCHHHHHHHHHhcC---CceE
Q 025564 172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGE--VRWMGKPDKVVQLLCSLSSS---VIIL 244 (251)
Q Consensus 172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~--~~~~GKP~~~~~~~a~~~l~---~~~~ 244 (251)
+.....++.+.++|.++ |+||......... ....+.+...+... +.. ....+||+|.+|..++++++ +++-
T Consensus 81 ~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~--~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~ 158 (220)
T PLN02811 81 PGAERLVRHLHAKGIPIAIATGSHKRHFDLK--TQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVDPG 158 (220)
T ss_pred ccHHHHHHHHHHCCCcEEEEeCCchhhHHHH--HcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCCcc
Confidence 44577777777788887 5566543211100 12223344444442 344 45578999999999999996 7653
No 183
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=92.75 E-value=0.051 Score=46.31 Aligned_cols=69 Identities=12% Similarity=0.048 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564 173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL 244 (251)
Q Consensus 173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~ 244 (251)
.....++.+.++|.++ ++||........ .+..-.+...++.. +......+||+|.+|+.+++++|++|-
T Consensus 97 g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~---~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~ 167 (224)
T PRK14988 97 DTVPFLEALKASGKRRILLTNAHPHNLAV---KLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAE 167 (224)
T ss_pred CHHHHHHHHHhCCCeEEEEeCcCHHHHHH---HHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChH
Confidence 3466777777788875 667744322111 12211233444432 334445689999999999999999874
No 184
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=92.62 E-value=0.22 Score=50.08 Aligned_cols=96 Identities=13% Similarity=0.041 Sum_probs=60.0
Q ss_pred ccEEEEeccc----cccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHHH
Q 025564 30 FKAWLLDQFG----VLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQY 105 (251)
Q Consensus 30 ~~~~l~D~DG----vL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~ 105 (251)
...+.+=.|| .+.-.+++.||+.++|++|+++|++++++|+..... .....+++|++.. ++ .++. -...+
T Consensus 548 ~~~v~va~~~~~~g~i~l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~--a~~ia~~lgi~~~-~~--~~p~-~K~~~ 621 (741)
T PRK11033 548 KTVVLVLRNDDVLGLIALQDTLRADARQAISELKALGIKGVMLTGDNPRA--AAAIAGELGIDFR-AG--LLPE-DKVKA 621 (741)
T ss_pred CEEEEEEECCEEEEEEEEecCCchhHHHHHHHHHHCCCEEEEEcCCCHHH--HHHHHHHcCCCee-cC--CCHH-HHHHH
Confidence 4556665555 445678899999999999999999999999976432 4456678999744 22 2222 23334
Q ss_pred HhccCchhhhhcCCeEEEeccCCcccccccCC
Q 025564 106 LLRRDDAWFAALGRSCIHMTWSDRGAISLEGL 137 (251)
Q Consensus 106 L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~ 137 (251)
+++... +..+..+|.|..+...++..
T Consensus 622 v~~l~~------~~~v~mvGDgiNDapAl~~A 647 (741)
T PRK11033 622 VTELNQ------HAPLAMVGDGINDAPAMKAA 647 (741)
T ss_pred HHHHhc------CCCEEEEECCHHhHHHHHhC
Confidence 444332 23566667543322344333
No 185
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=92.45 E-value=0.088 Score=48.68 Aligned_cols=72 Identities=21% Similarity=0.244 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceEEEE
Q 025564 173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIILFLI 247 (251)
Q Consensus 173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~ 247 (251)
.....++.+.++|.++ |+||........ .+..-.+...+... +.+....+||+|.+|..+++++|+++-=.|
T Consensus 220 Ga~ElL~~Lk~~GiklaIaSn~~~~~~~~---~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl 293 (381)
T PLN02575 220 GSQEFVNVLMNYKIPMALVSTRPRKTLEN---AIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCI 293 (381)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCCHHHHHH---HHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEE
Confidence 3467777777789886 666655433221 12222234455543 555556799999999999999998775333
No 186
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=92.25 E-value=0.28 Score=41.43 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=25.2
Q ss_pred ccCccHHHHHH-HHHHCCCeEEEEeCCCC
Q 025564 46 KPYPGAISTLE-MLATTGAKMVVISNSSR 73 (251)
Q Consensus 46 ~~~pGa~e~L~-~L~~~G~~v~ivTN~s~ 73 (251)
.++||+.+.|+ .++++|.+++|+||+.+
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~ 122 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQ 122 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcH
Confidence 57899999996 88999999999999874
No 187
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=92.02 E-value=0.42 Score=42.05 Aligned_cols=53 Identities=25% Similarity=0.202 Sum_probs=38.3
Q ss_pred CccEEEEeccccccCCC------ccCccHHHHHHHHHHCCC-eEEEEeCCCCCchhHHHHhH
Q 025564 29 RFKAWLLDQFGVLHDGK------KPYPGAISTLEMLATTGA-KMVVISNSSRRASTTIDKLK 83 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~------~~~pGa~e~L~~L~~~G~-~v~ivTN~s~~~~~~~~~L~ 83 (251)
+..++++|.||||.... .+-++..++|+.|.++.. -++|+|..+ .+++...+.
T Consensus 17 ~~~~~~lDyDGTl~~i~~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~--~~~l~~~~~ 76 (266)
T COG1877 17 RKRLLFLDYDGTLTEIVPHPEAAVPDDRLLSLLQDLASDPRNVVAIISGRS--LAELERLFG 76 (266)
T ss_pred cceEEEEeccccccccccCccccCCCHHHHHHHHHHHhcCCCeEEEEeCCC--HHHHHHhcC
Confidence 55799999999998643 456888999999988744 577888544 444444443
No 188
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=91.72 E-value=0.12 Score=43.35 Aligned_cols=66 Identities=15% Similarity=0.045 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHH--HHHHHh-CCCeEEecCCCHHHHHHHHHhcCCc
Q 025564 174 LEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLA--SKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVI 242 (251)
Q Consensus 174 l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~--~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~ 242 (251)
....++.+..+|.++ ++||........ .+..-.+. ..+... +......+||+|.+|+.+++++++.
T Consensus 92 ~~~~L~~L~~~g~~~~ivT~~~~~~~~~---~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~ 161 (220)
T TIGR03351 92 AEEAFRSLRSSGIKVALTTGFDRDTAER---LLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQ 161 (220)
T ss_pred HHHHHHHHHHCCCEEEEEeCCchHHHHH---HHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCC
Confidence 366777766778875 666655432211 11111122 223322 3344456899999999999999985
No 189
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=91.61 E-value=0.29 Score=48.87 Aligned_cols=113 Identities=20% Similarity=0.269 Sum_probs=71.7
Q ss_pred EEEEecccc----ccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHHHHh
Q 025564 32 AWLLDQFGV----LHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLL 107 (251)
Q Consensus 32 ~~l~D~DGv----L~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~ 107 (251)
.+++-.||. +.-.+++.|++.+++++|+++|+++.++|.-.+.. .+..-+++|++.. +.++...+. .+.++
T Consensus 519 ~v~va~dg~~~g~i~~~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~--A~~iA~~lGId~v-~AellPedK--~~~V~ 593 (713)
T COG2217 519 VVFVAVDGKLVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRT--AEAIAKELGIDEV-RAELLPEDK--AEIVR 593 (713)
T ss_pred EEEEEECCEEEEEEEEeCCCChhHHHHHHHHHHCCCeEEEEcCCCHHH--HHHHHHHcChHhh-eccCCcHHH--HHHHH
Confidence 588888883 45688999999999999999999999999866433 2344467899766 345443332 33444
Q ss_pred ccCchhhhhcCCeEEEeccCCcccccc--cCCCceecC----CCCCccEEEEe
Q 025564 108 RRDDAWFAALGRSCIHMTWSDRGAISL--EGLGLKVVE----NVEEADFILAH 154 (251)
Q Consensus 108 ~~~~~~~~~~g~~~~~~g~~~~~~~~l--~~~g~~~~~----~~~~~~~Vvv~ 154 (251)
+.... |+++..+|.|......| .+.|+..-. ..+-+|+|++.
T Consensus 594 ~l~~~-----g~~VamVGDGINDAPALA~AdVGiAmG~GtDvA~eaADvvL~~ 641 (713)
T COG2217 594 ELQAE-----GRKVAMVGDGINDAPALAAADVGIAMGSGTDVAIEAADVVLMR 641 (713)
T ss_pred HHHhc-----CCEEEEEeCCchhHHHHhhcCeeEeecCCcHHHHHhCCEEEec
Confidence 43322 57787778654222233 333443211 13567888874
No 190
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=91.40 E-value=0.44 Score=48.30 Aligned_cols=53 Identities=21% Similarity=0.255 Sum_probs=39.8
Q ss_pred ccEEEEeccccccCC---------CccCccHHHHHHHHHHC-CCeEEEEeCCCCCchhHHHHhHh
Q 025564 30 FKAWLLDQFGVLHDG---------KKPYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKS 84 (251)
Q Consensus 30 ~~~~l~D~DGvL~~g---------~~~~pGa~e~L~~L~~~-G~~v~ivTN~s~~~~~~~~~L~~ 84 (251)
-.+++||.||||..- ..+-|+..++|++|.+. +-.++|+|+.+ .+.+.+.|..
T Consensus 507 ~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~--~~~L~~~~~~ 569 (797)
T PLN03063 507 NRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSRSG--KDILDKNFGE 569 (797)
T ss_pred CeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCC--HHHHHHHhCC
Confidence 368999999999853 23567899999999765 67899999754 4456566644
No 191
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=91.37 E-value=0.48 Score=46.27 Aligned_cols=72 Identities=13% Similarity=0.116 Sum_probs=50.5
Q ss_pred cEEEEeccccccCCC-----------cc-CccHHHHHHHHHHCCCeEEEEeCCCC----CchhHHHHhHhCCCCCcccc-
Q 025564 31 KAWLLDQFGVLHDGK-----------KP-YPGAISTLEMLATTGAKMVVISNSSR----RASTTIDKLKSLGFDPSLFA- 93 (251)
Q Consensus 31 ~~~l~D~DGvL~~g~-----------~~-~pGa~e~L~~L~~~G~~v~ivTN~s~----~~~~~~~~L~~~Gl~~~~~~- 93 (251)
+.|+-|+||||+..+ .+ .-|+.++..+.+++||++.++|..+- .+..+.+-++.-|-.... .
T Consensus 531 kIVISDIDGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~LPd-GP 609 (738)
T KOG2116|consen 531 KIVISDIDGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKLPD-GP 609 (738)
T ss_pred cEEEecCCCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccCCC-CC
Confidence 689999999999754 22 46999999999999999999998652 234566666666655442 3
Q ss_pred ceeechhhHH
Q 025564 94 GAITSGELTH 103 (251)
Q Consensus 94 ~Iits~~~~~ 103 (251)
-|++++...+
T Consensus 610 ViLSPd~lf~ 619 (738)
T KOG2116|consen 610 VILSPDSLFA 619 (738)
T ss_pred EEeCCCcchH
Confidence 3444444333
No 192
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=90.97 E-value=0.49 Score=37.38 Aligned_cols=75 Identities=16% Similarity=0.008 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhCCCcE-EEccCCccccccCc---eeeCchHHHHHHHHhCCC-------------eEEecCCCHHHHH
Q 025564 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARA---LRVMPGTLASKFEKLGGE-------------VRWMGKPDKVVQL 233 (251)
Q Consensus 171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~---~~~~~G~i~~~~~~~g~~-------------~~~~GKP~~~~~~ 233 (251)
|+....+++++.++|.++ ++||.+........ ...-.-.+...++..+-. .....||+|.+|+
T Consensus 29 ~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~~~ 108 (147)
T TIGR01656 29 RPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGLIL 108 (147)
T ss_pred cCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHHHH
Confidence 345577888877889886 67787543111000 000001122233333321 1123699999999
Q ss_pred HHHHhcCCceEE
Q 025564 234 LCSLSSSVIILF 245 (251)
Q Consensus 234 ~a~~~l~~~~~~ 245 (251)
.+++++++++--
T Consensus 109 ~~~~~~~~~~~e 120 (147)
T TIGR01656 109 EALKRLGVDASR 120 (147)
T ss_pred HHHHHcCCChHH
Confidence 999999988743
No 193
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=90.93 E-value=0.34 Score=41.51 Aligned_cols=68 Identities=19% Similarity=0.072 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhCCCcEEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce--EEEE
Q 025564 172 QDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII--LFLI 247 (251)
Q Consensus 172 ~~l~~a~~~~~~~g~~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~--~~~~ 247 (251)
+.....++.+..+....++||.+... ..-.+...++.. +.+..-.+||+|.+|+.+++++|+.+ ..||
T Consensus 116 ~gv~~~L~~L~~~~~l~i~Tn~~~~~--------~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~V 186 (238)
T PRK10748 116 QATHDTLKQLAKKWPLVAITNGNAQP--------ELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILHV 186 (238)
T ss_pred ccHHHHHHHHHcCCCEEEEECCCchH--------HHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEEEE
Confidence 34566777654443334777855431 111234455542 44444578999999999999999877 4444
No 194
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=90.93 E-value=0.27 Score=41.20 Aligned_cols=72 Identities=18% Similarity=0.075 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCCc-EEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceEEEEe
Q 025564 173 DLEKILEICASKKIP-MVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIILFLIF 248 (251)
Q Consensus 173 ~l~~a~~~~~~~g~~-li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~ 248 (251)
.....++.+..+ .+ .+.||......... .-..| +...+... .....-+.||+|.+|+.+++++|++|-=.+|
T Consensus 103 ~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~--l~~~g-l~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~ 176 (229)
T COG1011 103 EALEALKELGKK-YKLGILTNGARPHQERK--LRQLG-LLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALF 176 (229)
T ss_pred hHHHHHHHHHhh-ccEEEEeCCChHHHHHH--HHHcC-ChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEEE
Confidence 334455543333 44 47788543222211 11233 55666652 3334447799999999999999998643333
No 195
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=90.86 E-value=0.28 Score=42.37 Aligned_cols=66 Identities=26% Similarity=0.243 Sum_probs=48.1
Q ss_pred EEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHH
Q 025564 32 AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTH 103 (251)
Q Consensus 32 ~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~ 103 (251)
.-.||-.+ -..-...++..++++.||++|..+.++||-... +...+..+|+..+ |+.++.|.++-.
T Consensus 101 ~~~~s~~~--~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r---~~~~l~~~~l~~~-fD~vv~S~e~g~ 166 (237)
T KOG3085|consen 101 FRLFSTFA--PSAWKYLDGMQELLQKLRKKGTILGIISNFDDR---LRLLLLPLGLSAY-FDFVVESCEVGL 166 (237)
T ss_pred hheecccc--ccCceeccHHHHHHHHHHhCCeEEEEecCCcHH---HHHHhhccCHHHh-hhhhhhhhhhcc
Confidence 44455444 223456789999999999999888888886532 3356678999877 799999887554
No 196
>PRK11590 hypothetical protein; Provisional
Probab=90.74 E-value=0.24 Score=41.63 Aligned_cols=31 Identities=23% Similarity=0.124 Sum_probs=20.4
Q ss_pred CccEEEEeccccccCCCccCccHHHHHHHH-HHCCC
Q 025564 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEML-ATTGA 63 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L-~~~G~ 63 (251)
.-+.++||+||||+.+. -...++..+ ++.|+
T Consensus 5 ~~k~~iFD~DGTL~~~d----~~~~~~~~~~~~~g~ 36 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD----MFGSFLRYLLRRQPL 36 (211)
T ss_pred cceEEEEecCCCCcccc----hHHHHHHHHHHhcch
Confidence 35799999999999443 334445555 55553
No 197
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=90.66 E-value=0.58 Score=48.10 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=40.0
Q ss_pred ccEEEEeccccccCC---------------CccCccHHHHHHHHHHC-CCeEEEEeCCCCCchhHHHHhHhCC
Q 025564 30 FKAWLLDQFGVLHDG---------------KKPYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKSLG 86 (251)
Q Consensus 30 ~~~~l~D~DGvL~~g---------------~~~~pGa~e~L~~L~~~-G~~v~ivTN~s~~~~~~~~~L~~~G 86 (251)
-.+++||.||||..- ..+-|+..++|+.|.+. +-.++|+|+.+ .+.+.+.|...+
T Consensus 591 ~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~--~~~Le~~fg~~~ 661 (934)
T PLN03064 591 NRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSD--RSVLDENFGEFD 661 (934)
T ss_pred ceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCC--HHHHHHHhCCCC
Confidence 468999999999852 12457889999999775 67899999755 444556665433
No 198
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=90.63 E-value=0.45 Score=47.29 Aligned_cols=99 Identities=15% Similarity=0.113 Sum_probs=61.3
Q ss_pred ccEEEEe----ccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHHH
Q 025564 30 FKAWLLD----QFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQY 105 (251)
Q Consensus 30 ~~~~l~D----~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~ 105 (251)
...+.+- +-|++.-.+.+.||+.+.+++|++.|++++++|...... ....-+++|++.. +.+ .++. -...+
T Consensus 426 ~r~l~va~~~~~lG~i~l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~t--a~~iA~~lGI~~v-~a~-~~Pe-dK~~~ 500 (675)
T TIGR01497 426 GTPLVVCEDNRIYGVIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLT--AAAIAAEAGVDDF-IAE-ATPE-DKIAL 500 (675)
T ss_pred CeEEEEEECCEEEEEEEecccchhHHHHHHHHHHHCCCEEEEEcCCCHHH--HHHHHHHcCCCEE-EcC-CCHH-HHHHH
Confidence 3445543 446667788999999999999999999999999865322 3355567899754 232 2222 23344
Q ss_pred HhccCchhhhhcCCeEEEeccCCcccccccCCC
Q 025564 106 LLRRDDAWFAALGRSCIHMTWSDRGAISLEGLG 138 (251)
Q Consensus 106 L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g 138 (251)
+++.... |..+..+|.|......|+..+
T Consensus 501 v~~lq~~-----g~~VamvGDG~NDapAL~~Ad 528 (675)
T TIGR01497 501 IRQEQAE-----GKLVAMTGDGTNDAPALAQAD 528 (675)
T ss_pred HHHHHHc-----CCeEEEECCCcchHHHHHhCC
Confidence 4433211 556777776543333454443
No 199
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=90.57 E-value=0.2 Score=42.80 Aligned_cols=78 Identities=13% Similarity=0.005 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHhCCCeEEecCCCHHHHHHHHHhcCCceEEEEee
Q 025564 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKVVQLLCSLSSSVIILFLIFL 249 (251)
Q Consensus 171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~~ 249 (251)
|+....+++.+.++|.++ |+||.+.......-...+.|.+...+...- ....-+||+|.+|..+++++|++|-=.+|+
T Consensus 97 ypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~f-d~~~g~KP~p~~y~~i~~~lgv~p~e~lfV 175 (220)
T TIGR01691 97 YPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYF-DTTVGLKTEAQSYVKIAGQLGSPPREILFL 175 (220)
T ss_pred CcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEE-EeCcccCCCHHHHHHHHHHhCcChhHEEEE
Confidence 455677888877889876 667765432111000111223333333210 112347999999999999999988555554
No 200
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=90.53 E-value=0.27 Score=38.67 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564 174 LEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII 243 (251)
Q Consensus 174 l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~ 243 (251)
+...++.+.++|.++ ++||.+...... ..... +...+... +..... +||+|.+|+.+++++++++
T Consensus 69 ~~e~l~~L~~~g~~~~i~T~~~~~~~~~---~~~~~-l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~ 135 (154)
T TIGR01549 69 AADLLKRLKEAGIKLGIISNGSLRAQKL---LLRKH-LGDYFDLILGSDEFG-AKPEPEIFLAALESLGLPP 135 (154)
T ss_pred HHHHHHHHHHCcCeEEEEeCCchHHHHH---HHHHH-HHhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCCC
Confidence 366666666778775 667766543221 11111 22233322 333344 8999999999999999976
No 201
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=90.30 E-value=0.61 Score=42.00 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=50.6
Q ss_pred HHHhcccCcc-EEEEeccccccC-------------------CCccCccHHHHHHHHHHCC-CeEEEEeCCCC-CchhHH
Q 025564 22 RHIAETRRFK-AWLLDQFGVLHD-------------------GKKPYPGAISTLEMLATTG-AKMVVISNSSR-RASTTI 79 (251)
Q Consensus 22 ~~~~~~~~~~-~~l~D~DGvL~~-------------------g~~~~pGa~e~L~~L~~~G-~~v~ivTN~s~-~~~~~~ 79 (251)
...++ ++. +++-|+|-|+.. ...++||+..+.+.|.+.| -++.++||++. .-..+.
T Consensus 154 ~~v~~--~a~igiISDiDDTV~~T~V~~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~ 231 (373)
T COG4850 154 VPVLN--RAGIGIISDIDDTVKVTGVTEGPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQ 231 (373)
T ss_pred ceeec--ccceeeeeccccceEecccccchHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHH
Confidence 34555 554 799999999875 2368999999999999998 89999999985 334466
Q ss_pred HHhHhCCCCC
Q 025564 80 DKLKSLGFDP 89 (251)
Q Consensus 80 ~~L~~~Gl~~ 89 (251)
+.+..-+|+.
T Consensus 232 efi~~~~~P~ 241 (373)
T COG4850 232 EFITNRNFPY 241 (373)
T ss_pred HHHhcCCCCC
Confidence 6666666664
No 202
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=90.14 E-value=0.81 Score=37.02 Aligned_cols=76 Identities=13% Similarity=-0.018 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhCCCcE-EEccCCccccccCc--eeeCch-HHHHHHHHhCCC--eEE-----------ecCCCHHHHHH
Q 025564 172 QDLEKILEICASKKIPM-VVANPDYVTVEARA--LRVMPG-TLASKFEKLGGE--VRW-----------MGKPDKVVQLL 234 (251)
Q Consensus 172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~--~~~~~G-~i~~~~~~~g~~--~~~-----------~GKP~~~~~~~ 234 (251)
+....+++++.++|.++ |+||.+-....... ....+. .+...++..|-. ..+ ..||+|.+|+.
T Consensus 32 pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~ii~~~~~~~~~~~~~KP~~~~~~~ 111 (161)
T TIGR01261 32 KGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGIIFDDVLICPHFPDDNCDCRKPKIKLLEP 111 (161)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCceeEEEECCCCCCCCCCCCCCCHHHHHH
Confidence 44567788877788885 77786422111100 011111 234444443332 122 34999999999
Q ss_pred HHHhcCCce--EEEE
Q 025564 235 CSLSSSVII--LFLI 247 (251)
Q Consensus 235 a~~~l~~~~--~~~~ 247 (251)
+++++++.+ .+||
T Consensus 112 ~~~~~~~~~~e~l~I 126 (161)
T TIGR01261 112 YLKKNLIDKARSYVI 126 (161)
T ss_pred HHHHcCCCHHHeEEE
Confidence 999999876 5554
No 203
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=90.13 E-value=0.16 Score=42.17 Aligned_cols=69 Identities=10% Similarity=0.004 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564 173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL 244 (251)
Q Consensus 173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~ 244 (251)
.....++.+.++|.++ ++||........ .+..-.+...+... +.+....+||+|.+|+.+++++++++-
T Consensus 79 g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~---~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~ 149 (205)
T TIGR01454 79 GVPELLAELRADGVGTAIATGKSGPRARS---LLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPE 149 (205)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCchHHHHH---HHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChh
Confidence 3466777777778765 667754332211 01100111222321 333345689999999999999998763
No 204
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=90.11 E-value=0.17 Score=41.67 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEccCCccccccCceeeCchHHHHHHHHhCC-CeEE----ecCCCHHHHHHHHHhcCCce
Q 025564 171 LQDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKLGG-EVRW----MGKPDKVVQLLCSLSSSVII 243 (251)
Q Consensus 171 ~~~l~~a~~~~~~~g~~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~g~-~~~~----~GKP~~~~~~~a~~~l~~~~ 243 (251)
+++...+++.+.+.|.+++...-|...... +..+..|- +..+ .|||++.+|..++++|++++
T Consensus 129 ~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~-----------~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~ 195 (215)
T PF00702_consen 129 RPGAKEALQELKEAGIKVAILTGDNESTAS-----------AIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKP 195 (215)
T ss_dssp HTTHHHHHHHHHHTTEEEEEEESSEHHHHH-----------HHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTG
T ss_pred hhhhhhhhhhhhccCcceeeeecccccccc-----------ccccccccccccccccccccccchhHHHHHHHHhcCC
Confidence 456788888888889876554344332211 12222343 2111 17999999999999998654
No 205
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=89.93 E-value=0.84 Score=35.26 Aligned_cols=76 Identities=16% Similarity=0.134 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhCCCcE-EEccC-CccccccCceeeC-chH---HHHHHHHh-CCCeEEecCCCHHHHHHHHHhcC--C
Q 025564 171 LQDLEKILEICASKKIPM-VVANP-DYVTVEARALRVM-PGT---LASKFEKL-GGEVRWMGKPDKVVQLLCSLSSS--V 241 (251)
Q Consensus 171 ~~~l~~a~~~~~~~g~~l-i~~n~-D~~~~~~~~~~~~-~G~---i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~--~ 241 (251)
|+.....++.+.++|.++ ++||. ...+....-...+ .|- +...+... +.. .||.|.+|..+++++| +
T Consensus 31 ~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~----~~pkp~~~~~a~~~lg~~~ 106 (128)
T TIGR01681 31 IKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGY----WLPKSPRLVEIALKLNGVL 106 (128)
T ss_pred HHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcC----CCcHHHHHHHHHHHhcCCC
Confidence 678888888877889886 56776 3433221100111 111 34445442 222 3699999999999999 9
Q ss_pred ceEEEEeec
Q 025564 242 IILFLIFLD 250 (251)
Q Consensus 242 ~~~~~~~~~ 250 (251)
.+-=.+++|
T Consensus 107 ~p~~~l~ig 115 (128)
T TIGR01681 107 KPKSILFVD 115 (128)
T ss_pred CcceEEEEC
Confidence 887666653
No 206
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=89.80 E-value=0.51 Score=38.43 Aligned_cols=22 Identities=14% Similarity=0.033 Sum_probs=19.1
Q ss_pred ecCCCHHHHHHHHHhcCCceEE
Q 025564 224 MGKPDKVVQLLCSLSSSVIILF 245 (251)
Q Consensus 224 ~GKP~~~~~~~a~~~l~~~~~~ 245 (251)
.+||+|.+|..+++++++.+-=
T Consensus 104 ~~KP~p~~~~~a~~~~~~~~~~ 125 (176)
T TIGR00213 104 CRKPKPGMLLQARKELHIDMAQ 125 (176)
T ss_pred CCCCCHHHHHHHHHHcCcChhh
Confidence 5799999999999999987633
No 207
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=89.61 E-value=1.2 Score=36.25 Aligned_cols=73 Identities=11% Similarity=0.115 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCch----HHHHHHHHhCCC--------eEEecCCCHHHHHHHHH
Q 025564 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPG----TLASKFEKLGGE--------VRWMGKPDKVVQLLCSL 237 (251)
Q Consensus 171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G----~i~~~~~~~g~~--------~~~~GKP~~~~~~~a~~ 237 (251)
|+....+++.+.++|.++ |+||....... ....- .+...++..|-. .....||+|.+|+.+++
T Consensus 44 ~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~----~~~~~~~~~~i~~~l~~~gl~~~~ii~~~~~~~~KP~p~~~~~~~~ 119 (166)
T TIGR01664 44 YPEIPAKLQELDDEGYKIVIFTNQSGIGRG----KLSAESFKNKIEAFLEKLKVPIQVLAATHAGLYRKPMTGMWEYLQS 119 (166)
T ss_pred cCCHHHHHHHHHHCCCEEEEEeCCcccccC----cccHHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCccHHHHHHHH
Confidence 456678888877889886 66774432110 01111 123344443322 11357999999999999
Q ss_pred hcC--Cce--EEEE
Q 025564 238 SSS--VII--LFLI 247 (251)
Q Consensus 238 ~l~--~~~--~~~~ 247 (251)
+++ +++ .+||
T Consensus 120 ~~~~~~~~~~~v~V 133 (166)
T TIGR01664 120 QYNSPIKMTRSFYV 133 (166)
T ss_pred HcCCCCCchhcEEE
Confidence 998 544 5555
No 208
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=89.59 E-value=0.76 Score=40.15 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=53.5
Q ss_pred EEEEeccccccCCC----------------------c-----cCccHHHHHHHHHHC------CCeEEEEeCCCC-Cchh
Q 025564 32 AWLLDQFGVLHDGK----------------------K-----PYPGAISTLEMLATT------GAKMVVISNSSR-RAST 77 (251)
Q Consensus 32 ~~l~D~DGvL~~g~----------------------~-----~~pGa~e~L~~L~~~------G~~v~ivTN~s~-~~~~ 77 (251)
-|.||-|+||.... . |+....+.|.+|+++ -++++++|..+. ..+.
T Consensus 123 RIAFDgDaVLfsDesE~vy~~~GL~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~R 202 (264)
T PF06189_consen 123 RIAFDGDAVLFSDESERVYQEQGLEAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAHER 202 (264)
T ss_pred EEEEcCCeEeecCcchHhHHhccHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhHH
Confidence 58999999998632 1 222333345555544 457899998663 3356
Q ss_pred HHHHhHhCCCCCccccceeechhhHHHHHhccC
Q 025564 78 TIDKLKSLGFDPSLFAGAITSGELTHQYLLRRD 110 (251)
Q Consensus 78 ~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~~~~ 110 (251)
+.+-|+.+|+.+. +..+.++.....+|+...
T Consensus 203 vI~TLr~Wgv~vD--EafFLgG~~K~~vL~~~~ 233 (264)
T PF06189_consen 203 VIRTLRSWGVRVD--EAFFLGGLPKGPVLKAFR 233 (264)
T ss_pred HHHHHHHcCCcHh--HHHHhCCCchhHHHHhhC
Confidence 7889999999987 577778877777777653
No 209
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=89.51 E-value=1.2 Score=40.83 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=38.2
Q ss_pred ccCCCcc--CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 41 LHDGKKP--YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 41 L~~g~~~--~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
.+.|.+| .|...++++++++.|+.+.+.||...-.++..+.|.+.|+..
T Consensus 67 ~~~GGEPll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~~g~~~ 117 (378)
T PRK05301 67 HFSGGEPLLRKDLEELVAHARELGLYTNLITSGVGLTEARLAALKDAGLDH 117 (378)
T ss_pred EEECCccCCchhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHHcCCCE
Confidence 3445554 489999999999999999999998764555677888888763
No 210
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.47 E-value=0.64 Score=44.03 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=35.4
Q ss_pred CccEEEEeccccccCCC-----------------ccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564 29 RFKAWLLDQFGVLHDGK-----------------KPYPGAISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~-----------------~~~pGa~e~L~~L~~~G~~v~ivTN~s 72 (251)
..++.++|+|+|||-|. .++-..++.+..|+++|.-.+++|-|.
T Consensus 221 ~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~ 281 (574)
T COG3882 221 SKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNT 281 (574)
T ss_pred ccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHhccEEEEEecCCc
Confidence 35899999999999753 234445778999999999999999765
No 211
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=89.10 E-value=0.3 Score=41.71 Aligned_cols=39 Identities=28% Similarity=0.301 Sum_probs=25.1
Q ss_pred EEeccccccCC------CccCccHHHHHHHHHHCCC-eEEEEeCCC
Q 025564 34 LLDQFGVLHDG------KKPYPGAISTLEMLATTGA-KMVVISNSS 72 (251)
Q Consensus 34 l~D~DGvL~~g------~~~~pGa~e~L~~L~~~G~-~v~ivTN~s 72 (251)
++|.||||..- ..+.|++.++|++|.+... .++|+|+.+
T Consensus 1 ~lDyDGTL~p~~~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~ 46 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDPDAAVPPPELRELLRALAADPNNTVAIVSGRS 46 (235)
T ss_dssp EEE-TTTSS---S-GGG----HHHHHHHHHHHHHSE--EEEE-SS-
T ss_pred CcccCCccCCCCCCccccCCCHHHHHHHHHHhccCCCEEEEEEeCC
Confidence 68999999853 2567899999999987644 799999755
No 212
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=89.09 E-value=1.9 Score=43.80 Aligned_cols=117 Identities=16% Similarity=0.218 Sum_probs=74.0
Q ss_pred cCccEEEEecccccc----CCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHH
Q 025564 28 RRFKAWLLDQFGVLH----DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTH 103 (251)
Q Consensus 28 ~~~~~~l~D~DGvL~----~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~ 103 (251)
+..-++.+=+||.|. -.+.+.|++..+++.|++.|++++.+|+..+.+ ....-++.|++.- +.++..++. .
T Consensus 701 ~g~tvv~v~vn~~l~gv~~l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~a--A~svA~~VGi~~V-~aev~P~~K--~ 775 (951)
T KOG0207|consen 701 KGQTVVYVAVNGQLVGVFALEDQVRPDAALAVAELKSMGIKVVMLTGDNDAA--ARSVAQQVGIDNV-YAEVLPEQK--A 775 (951)
T ss_pred cCceEEEEEECCEEEEEEEeccccchhHHHHHHHHHhcCceEEEEcCCCHHH--HHHHHHhhCcceE-EeccCchhh--H
Confidence 356688888888876 477899999999999999999999999866433 2233356787765 355555443 3
Q ss_pred HHHhccCchhhhhcCCeEEEeccCCcccc--cccCCCceecC----CCCCccEEEEe
Q 025564 104 QYLLRRDDAWFAALGRSCIHMTWSDRGAI--SLEGLGLKVVE----NVEEADFILAH 154 (251)
Q Consensus 104 ~~L~~~~~~~~~~~g~~~~~~g~~~~~~~--~l~~~g~~~~~----~~~~~~~Vvv~ 154 (251)
+++++.... |..+..+|.|-..-. ...+.|+.+-. ..+.+|+|++.
T Consensus 776 ~~Ik~lq~~-----~~~VaMVGDGINDaPALA~AdVGIaig~gs~vAieaADIVLmr 827 (951)
T KOG0207|consen 776 EKIKEIQKN-----GGPVAMVGDGINDAPALAQADVGIAIGAGSDVAIEAADIVLMR 827 (951)
T ss_pred HHHHHHHhc-----CCcEEEEeCCCCccHHHHhhccceeeccccHHHHhhCCEEEEc
Confidence 455544322 345666675432222 33445654422 13567777773
No 213
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=88.80 E-value=1.2 Score=39.86 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=45.8
Q ss_pred CccEEEEeccccccCCCccCccHHHHHHHHHHCC-CeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHH
Q 025564 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTG-AKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G-~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~ 104 (251)
+++.+.|=++| .-.++|...|+++.+++.| ++++++||++. .++ ++++. . +++++-+-++..+
T Consensus 79 ~pd~vtis~~G----EPTLy~~L~elI~~~k~~g~~~tflvTNgsl--pdv---~~~L~---~-~dql~~sLdA~~~ 142 (296)
T COG0731 79 EPDHVTISLSG----EPTLYPNLGELIEEIKKRGKKTTFLVTNGSL--PDV---LEELK---L-PDQLYVSLDAPDE 142 (296)
T ss_pred CCCEEEEeCCC----CcccccCHHHHHHHHHhcCCceEEEEeCCCh--HHH---HHHhc---c-CCEEEEEeccCCH
Confidence 56677777777 6678999999999999999 79999999986 333 34444 2 2666666555444
No 214
>PRK09449 dUMP phosphatase; Provisional
Probab=88.47 E-value=0.37 Score=40.48 Aligned_cols=67 Identities=18% Similarity=0.105 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCc
Q 025564 172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVI 242 (251)
Q Consensus 172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~ 242 (251)
......++.+. +|.++ ++||........ .+..-.+...++.. +.......||+|.+|+.+++++|+.
T Consensus 98 ~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~---~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~ 166 (224)
T PRK09449 98 PGAVELLNALR-GKVKMGIITNGFTELQQV---RLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNP 166 (224)
T ss_pred ccHHHHHHHHH-hCCeEEEEeCCcHHHHHH---HHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCC
Confidence 34466777655 56665 677754322110 11111233344432 3344456899999999999999974
No 215
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=88.28 E-value=0.82 Score=45.46 Aligned_cols=81 Identities=14% Similarity=0.125 Sum_probs=52.6
Q ss_pred ccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHHHHhccCchhhhh
Q 025564 37 QFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAA 116 (251)
Q Consensus 37 ~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~~~~~~~~~~ 116 (251)
+-|++.-.+.+.|++++.+++||+.|+++..+|.....+ ....-+++|++.. +.++ ++.+ ...+++.....
T Consensus 432 ~lG~i~l~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~T--A~aIA~elGI~~v-~A~~-~Ped-K~~iV~~lQ~~---- 502 (673)
T PRK14010 432 ILGVIYLKDVIKDGLVERFRELREMGIETVMCTGDNELT--AATIAKEAGVDRF-VAEC-KPED-KINVIREEQAK---- 502 (673)
T ss_pred EEEEEEeecCCcHHHHHHHHHHHHCCCeEEEECCCCHHH--HHHHHHHcCCceE-EcCC-CHHH-HHHHHHHHHhC----
Confidence 345666778999999999999999999999999866432 3344467899754 3333 3333 33344432211
Q ss_pred cCCeEEEeccC
Q 025564 117 LGRSCIHMTWS 127 (251)
Q Consensus 117 ~g~~~~~~g~~ 127 (251)
|+.|-..|.|
T Consensus 503 -G~~VaMtGDG 512 (673)
T PRK14010 503 -GHIVAMTGDG 512 (673)
T ss_pred -CCEEEEECCC
Confidence 5566666654
No 216
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=88.11 E-value=1.2 Score=41.71 Aligned_cols=70 Identities=14% Similarity=0.142 Sum_probs=48.7
Q ss_pred CccEEEEeccccccCCCcc------------CccHHHHHHHHHHCCCeEEEEeCCCC----CchhHHHHhHhCCCCCccc
Q 025564 29 RFKAWLLDQFGVLHDGKKP------------YPGAISTLEMLATTGAKMVVISNSSR----RASTTIDKLKSLGFDPSLF 92 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~~~------------~pGa~e~L~~L~~~G~~v~ivTN~s~----~~~~~~~~L~~~Gl~~~~~ 92 (251)
..+.+++|+||||...+-+ .-|+..+.....+.|+++..+|..+- +++.+....++-|.....
T Consensus 374 n~kiVVsDiDGTITkSD~~Ghv~~miGkdwth~gVAkLYtdI~rNGYkI~YltsR~~Gqa~sTrsylrnieQngykLpd- 452 (580)
T COG5083 374 NKKIVVSDIDGTITKSDALGHVKQMIGKDWTHNGVAKLYTDIDRNGYKIKYLTSRSYGQADSTRSYLRNIEQNGYKLPD- 452 (580)
T ss_pred CCcEEEEecCCcEEehhhHHHHHHHhccchhhcchhhhhhhhccCceEEEEEecccccchhhhhhHHHhhhhcCccCCC-
Confidence 5689999999999875422 36888888889999999999998762 233444445566665542
Q ss_pred cceeech
Q 025564 93 AGAITSG 99 (251)
Q Consensus 93 ~~Iits~ 99 (251)
.-++.|-
T Consensus 453 gpviLsp 459 (580)
T COG5083 453 GPVILSP 459 (580)
T ss_pred CCEeecc
Confidence 3344333
No 217
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=88.11 E-value=0.26 Score=41.88 Aligned_cols=69 Identities=16% Similarity=0.099 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564 173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL 244 (251)
Q Consensus 173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~ 244 (251)
.....++.+.++|.++ ++||........ .+..-.+...+... +.+....+||+|.+|..+++++|+++-
T Consensus 99 g~~~~L~~L~~~g~~l~i~Tn~~~~~~~~---~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~ 169 (229)
T PRK13226 99 GVEGMLQRLECAGCVWGIVTNKPEYLARL---ILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPT 169 (229)
T ss_pred CHHHHHHHHHHCCCeEEEECCCCHHHHHH---HHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChh
Confidence 3356676767778776 777764422110 01100112223332 334445689999999999999998774
No 218
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=88.04 E-value=2.4 Score=31.13 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=50.9
Q ss_pred ChHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 20 GLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 20 ~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
.+.+.++..+.+.+++|+-+|=+-+..-+--..++.++++++|.++.++.= ...+.+.|+..|+...
T Consensus 29 ~l~~~~~~~~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~l~~~----~~~v~~~l~~~gl~~~ 95 (106)
T TIGR02886 29 KIDDAIERRPIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVIVCNV----SPAVKRLFELSGLFKI 95 (106)
T ss_pred HHHHHHHhCCCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEEEEeC----CHHHHHHHHHhCCceE
Confidence 334444312468999999999998887777777889999999999987763 2346788888998765
No 219
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=87.94 E-value=0.93 Score=45.12 Aligned_cols=107 Identities=18% Similarity=0.187 Sum_probs=63.8
Q ss_pred ccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHHHHhccCchhhhh
Q 025564 37 QFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAA 116 (251)
Q Consensus 37 ~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~~~~~~~~~~ 116 (251)
+-|++.-.+.+.||+.+.+++|+++|+++..+|.....+ ....-+++|++.. +.+ .++.+ ...++++....
T Consensus 436 ~lG~i~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~T--A~aIA~elGId~v-~A~-~~Ped-K~~iV~~lQ~~---- 506 (679)
T PRK01122 436 VLGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLT--AAAIAAEAGVDDF-LAE-ATPED-KLALIRQEQAE---- 506 (679)
T ss_pred EEEEEEEeccCchhHHHHHHHHHHCCCeEEEECCCCHHH--HHHHHHHcCCcEE-Ecc-CCHHH-HHHHHHHHHHc----
Confidence 446677788999999999999999999999999866433 2344456899754 222 23332 33344433211
Q ss_pred cCCeEEEeccCCcccccccCC--CceecC----CCCCccEEEE
Q 025564 117 LGRSCIHMTWSDRGAISLEGL--GLKVVE----NVEEADFILA 153 (251)
Q Consensus 117 ~g~~~~~~g~~~~~~~~l~~~--g~~~~~----~~~~~~~Vvv 153 (251)
|+.|-..|.|-.....|+.. |+..-. .-+.+|.|++
T Consensus 507 -G~~VaMtGDGvNDAPALa~ADVGIAMgsGTdvAkeAADiVLl 548 (679)
T PRK01122 507 -GRLVAMTGDGTNDAPALAQADVGVAMNSGTQAAKEAGNMVDL 548 (679)
T ss_pred -CCeEEEECCCcchHHHHHhCCEeEEeCCCCHHHHHhCCEEEe
Confidence 56666667553322244333 443321 0245666666
No 220
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=87.68 E-value=1.8 Score=33.08 Aligned_cols=70 Identities=16% Similarity=0.119 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHhCCCe---EE---ecCCCHHHHHHHHHhc-CCc
Q 025564 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGEV---RW---MGKPDKVVQLLCSLSS-SVI 242 (251)
Q Consensus 171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~g~~~---~~---~GKP~~~~~~~a~~~l-~~~ 242 (251)
|.....+++.+.++|.++ ++||........ .-.-.+.+.++..+... .+ ..||+|.+|+.+++++ +++
T Consensus 27 ~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~ 102 (132)
T TIGR01662 27 YPEVPDALAELKEAGYKVVIVTNQSGIGRGK----FSSGRVARRLEELGVPIDVLYACPHCRKPKPGMFLEALKRFNEID 102 (132)
T ss_pred CCCHHHHHHHHHHCCCEEEEEECCccccccH----HHHHHHHHHHHHCCCCEEEEEECCCCCCCChHHHHHHHHHcCCCC
Confidence 456677888877788886 556654322110 00112334444433321 12 4699999999999999 586
Q ss_pred eE
Q 025564 243 IL 244 (251)
Q Consensus 243 ~~ 244 (251)
+-
T Consensus 103 ~~ 104 (132)
T TIGR01662 103 PE 104 (132)
T ss_pred hh
Confidence 64
No 221
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=87.63 E-value=0.18 Score=40.55 Aligned_cols=57 Identities=16% Similarity=0.086 Sum_probs=35.3
Q ss_pred EEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceEEEE
Q 025564 188 MVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIILFLI 247 (251)
Q Consensus 188 li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~ 247 (251)
.|+||.+...... .+..-.+...++.. +.+....+||+|.+|+.+++++|++|-=.+
T Consensus 103 ~i~Tn~~~~~~~~---~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l 160 (175)
T TIGR01493 103 AILSNASHWAFDQ---FAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVL 160 (175)
T ss_pred hhhhCCCHHHHHH---HHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeE
Confidence 4677766544321 11111234445542 555556789999999999999999874333
No 222
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=87.41 E-value=0.48 Score=38.28 Aligned_cols=71 Identities=15% Similarity=0.145 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce--EEEE
Q 025564 172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII--LFLI 247 (251)
Q Consensus 172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~--~~~~ 247 (251)
......++.+.++|.++ ++||..... ..+..-.+...+... +......+||+|.+|+.+++++++++ ..||
T Consensus 90 pg~~~~L~~L~~~g~~~~i~s~~~~~~-----~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~v 164 (185)
T TIGR01990 90 PGIKNLLDDLKKNNIKIALASASKNAP-----TVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIGI 164 (185)
T ss_pred ccHHHHHHHHHHCCCeEEEEeCCccHH-----HHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEEE
Confidence 34466777777788887 455532110 011111122223321 33334568999999999999999875 4444
No 223
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=87.39 E-value=0.074 Score=42.00 Aligned_cols=74 Identities=19% Similarity=0.203 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceEEEEee
Q 025564 173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIILFLIFL 249 (251)
Q Consensus 173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~~ 249 (251)
.+..+++.+.++|.++ ++||.+....... +..-.+...+... +....-..||+|.+|+.++++++++|-=++|+
T Consensus 81 ~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~---l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~v 156 (176)
T PF13419_consen 81 GVRELLERLKAKGIPLVIVSNGSRERIERV---LERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEILFV 156 (176)
T ss_dssp THHHHHHHHHHTTSEEEEEESSEHHHHHHH---HHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEEEE
T ss_pred hhhhhhhhcccccceeEEeecCCccccccc---ccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEEEE
Confidence 3466777766688887 5566654322110 0000011111111 12223347999999999999999887555544
No 224
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=86.96 E-value=1.8 Score=33.74 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=31.7
Q ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
.++.+...|..|+++|+.++++||+..+ +-..+.|+.+.+..
T Consensus 45 fY~Di~rIL~dLk~~GVtl~~ASRt~ap-~iA~q~L~~fkvk~ 86 (144)
T KOG4549|consen 45 FYDDIRRILVDLKKLGVTLIHASRTMAP-QIASQGLETFKVKQ 86 (144)
T ss_pred eccchhHHHHHHHhcCcEEEEecCCCCH-HHHHHHHHHhccCc
Confidence 5799999999999999999999997642 22334566665553
No 225
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=86.81 E-value=0.27 Score=41.10 Aligned_cols=68 Identities=16% Similarity=0.021 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564 173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII 243 (251)
Q Consensus 173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~ 243 (251)
....+++.+.++|.++ |+||........ .+..-.+...+... +.+....+||+|.+|+.+++++++++
T Consensus 86 g~~~~l~~L~~~g~~~~i~S~~~~~~~~~---~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~ 155 (214)
T PRK13288 86 TVYETLKTLKKQGYKLGIVTTKMRDTVEM---GLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKP 155 (214)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCCHHHHHH---HHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCH
Confidence 3466777766778876 567654321110 01111122223221 33334458999999999999999876
No 226
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=86.34 E-value=2.4 Score=35.32 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=29.5
Q ss_pred CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCC
Q 025564 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG 86 (251)
Q Consensus 45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~G 86 (251)
...-||.+++++.+++++.|++++|+....- +...|++++
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~f--I~~lfe~iv 111 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPF--IYPLFEGIV 111 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchH--HHHHHHhhc
Confidence 3556899999999999999999999876432 334455544
No 227
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=86.33 E-value=0.27 Score=39.79 Aligned_cols=67 Identities=18% Similarity=0.128 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564 173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL 244 (251)
Q Consensus 173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~ 244 (251)
.+...++.+.++|.++ ++||. ... . ..+..-.+...++.. +......+||+|.+|+.+++++++++-
T Consensus 92 g~~~~l~~l~~~g~~i~i~S~~-~~~---~-~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 160 (185)
T TIGR02009 92 GIENFLKRLKKKGIAVGLGSSS-KNA---D-RILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPN 160 (185)
T ss_pred CHHHHHHHHHHcCCeEEEEeCc-hhH---H-HHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHH
Confidence 3456666666778887 44544 111 0 011111222333332 333344689999999999999998653
No 228
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=86.20 E-value=2 Score=33.94 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=34.4
Q ss_pred EEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCc
Q 025564 32 AWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRA 75 (251)
Q Consensus 32 ~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~ 75 (251)
.-++|+||.+..-.. --..-.+.++.+.+.|+|++++|.-+..+
T Consensus 45 iAildL~G~~l~l~S~R~~~~~evi~~I~~~G~PviVAtDV~p~P 89 (138)
T PF04312_consen 45 IAILDLDGELLDLKSSRNMSRSEVIEWISEYGKPVIVATDVSPPP 89 (138)
T ss_pred EEEEecCCcEEEEEeecCCCHHHHHHHHHHcCCEEEEEecCCCCc
Confidence 568999999876432 23467889999999999999999876443
No 229
>PRK11587 putative phosphatase; Provisional
Probab=86.18 E-value=0.26 Score=41.43 Aligned_cols=73 Identities=18% Similarity=0.062 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHH-hCCCeEEecCCCHHHHHHHHHhcCCceEEEEe
Q 025564 172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEK-LGGEVRWMGKPDKVVQLLCSLSSSVIILFLIF 248 (251)
Q Consensus 172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~-~g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~ 248 (251)
+.....++.+.++|.++ ++||.........-...+-.. +.. .+.+....+||+|.+|..+++++|++|-=.++
T Consensus 86 pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~~----~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l~ 160 (218)
T PRK11587 86 PGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLPA----PEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVV 160 (218)
T ss_pred cCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCCC----ccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEEE
Confidence 34467777777788886 667754321110000011000 111 12333446799999999999999997744333
No 230
>PLN02940 riboflavin kinase
Probab=86.17 E-value=0.47 Score=43.86 Aligned_cols=68 Identities=21% Similarity=0.313 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCCcE-EEccCCccccccCceeeC-chHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564 173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVM-PGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII 243 (251)
Q Consensus 173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~-~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~ 243 (251)
.....++.+.++|.++ |+||........ .+. .-.+...+... +.+....+||+|.+|..+++++++++
T Consensus 97 Gv~elL~~Lk~~g~~l~IvTn~~~~~~~~---~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p 167 (382)
T PLN02940 97 GANRLIKHLKSHGVPMALASNSPRANIEA---KISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEP 167 (382)
T ss_pred CHHHHHHHHHHCCCcEEEEeCCcHHHHHH---HHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCCh
Confidence 3466777777788886 777764432110 111 11122333332 44445578999999999999999886
No 231
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=85.97 E-value=6.8 Score=33.75 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=52.7
Q ss_pred ccCChHHHhcccCccEEEEeccccccCCCccCcc------HHHHHHHHHHCCCeEEEEeCCCC-C--ch---hHHHHhHh
Q 025564 17 TLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPG------AISTLEMLATTGAKMVVISNSSR-R--AS---TTIDKLKS 84 (251)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pG------a~e~L~~L~~~G~~v~ivTN~s~-~--~~---~~~~~L~~ 84 (251)
..+.+++++. +.|..+..+++++.......++ -.+.++.|+..|+.++-+.||.. . .+ +-.+.|++
T Consensus 26 ~~~~v~~~l~--~aD~~~~NlE~~v~~~~~~~~~~~~f~~~~~~~~~L~~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~ 103 (250)
T PF09587_consen 26 IFEDVKPLLQ--SADLVVANLETPVTDSGQPASGYPHFNAPPEILDALKDAGFDVVSLANNHIFDYGEEGLLDTLEALDK 103 (250)
T ss_pred HHHHHHHHHh--hCCEEEEEeeecCcCCCCcCCCcceecCCHHHHHHHHHcCCCEEEecCCCCccccHHHHHHHHHHHHH
Confidence 3467788899 8899999999999877665554 46789999999999998888853 2 22 23456666
Q ss_pred CCCC
Q 025564 85 LGFD 88 (251)
Q Consensus 85 ~Gl~ 88 (251)
.|+.
T Consensus 104 ~gi~ 107 (250)
T PF09587_consen 104 AGIP 107 (250)
T ss_pred CCCc
Confidence 7765
No 232
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=85.62 E-value=2.4 Score=38.05 Aligned_cols=76 Identities=11% Similarity=0.011 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhCCCcE-EEccCCccccccC-ceeeCchHHHHHHHHhCCCeEEecCCCHHHHHHHHHhcCCceEEEEe
Q 025564 171 LQDLEKILEICASKKIPM-VVANPDYVTVEAR-ALRVMPGTLASKFEKLGGEVRWMGKPDKVVQLLCSLSSSVIILFLIF 248 (251)
Q Consensus 171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~-~~~~~~G~i~~~~~~~g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~ 248 (251)
|..++..+..+.++|.++ ||+|.+......- ...++.=.+...+.. ...-.||.|..+..+++++++.+-=+||
T Consensus 33 ~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~----~~~~~~pk~~~i~~~~~~l~i~~~~~vf 108 (320)
T TIGR01686 33 HKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDA----RSINWGPKSESLRKIAKKLNLGTDSFLF 108 (320)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeE----EEEecCchHHHHHHHHHHhCCCcCcEEE
Confidence 788999999888899886 6777665322110 000000001111111 1223699999999999999988777777
Q ss_pred ec
Q 025564 249 LD 250 (251)
Q Consensus 249 ~~ 250 (251)
+|
T Consensus 109 id 110 (320)
T TIGR01686 109 ID 110 (320)
T ss_pred EC
Confidence 65
No 233
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=85.08 E-value=1.2 Score=36.05 Aligned_cols=39 Identities=28% Similarity=0.435 Sum_probs=30.1
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 49 PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 49 pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
|++.++|+.++++|.+++|+|.+.. .-+...++.+|++.
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~--~~i~~~~~~~~i~~ 130 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPD--EIIEPIAERLGIDD 130 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEH--HHHHHHHHHTTSSE
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcH--HHHHHHHHHcCCCc
Confidence 5556999999999999999998753 22445556788875
No 234
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=84.29 E-value=1.2 Score=33.29 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=47.5
Q ss_pred ccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 30 ~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
++.+++|+.+|-+-+..-+.-..++.+.++++|.++.|+.- ...+.+.|...|+...
T Consensus 48 ~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~----~~~v~~~l~~~~~~~~ 104 (117)
T PF01740_consen 48 IKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLVGL----NPDVRRILERSGLIDF 104 (117)
T ss_dssp SSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEESH----HHHHHHHHHHTTGHHH
T ss_pred ceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHcCCChh
Confidence 58999999999988888888889999999999999988773 2346677888888743
No 235
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=84.15 E-value=2 Score=36.31 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=31.3
Q ss_pred cEEEEeccccccCCC-ccCccHHHHHHHHHHCCCeEEEEeCC
Q 025564 31 KAWLLDQFGVLHDGK-KPYPGAISTLEMLATTGAKMVVISNS 71 (251)
Q Consensus 31 ~~~l~D~DGvL~~g~-~~~pGa~e~L~~L~~~G~~v~ivTN~ 71 (251)
-.++||+||||.... ...|...++|+.||+. ..+.++-.+
T Consensus 12 ~l~lfdvdgtLt~~r~~~~~e~~~~l~~lr~~-v~ig~Vggs 52 (252)
T KOG3189|consen 12 TLCLFDVDGTLTPPRQKVTPEMLEFLQKLRKK-VTIGFVGGS 52 (252)
T ss_pred eEEEEecCCccccccccCCHHHHHHHHHHhhh-eEEEEeecH
Confidence 379999999998654 5678999999998764 566666654
No 236
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=84.07 E-value=0.51 Score=41.38 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceEEEEee
Q 025564 172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIILFLIFL 249 (251)
Q Consensus 172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~~ 249 (251)
+.....++.+..+|.++ ++||........ .+..-.+...+... +.+....+||+|.+|+.+++++|+++--.+++
T Consensus 104 ~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~---~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l~I 180 (272)
T PRK13223 104 PGVRDTLKWLKKQGVEMALITNKPERFVAP---LLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSLFV 180 (272)
T ss_pred CCHHHHHHHHHHCCCeEEEEECCcHHHHHH---HHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEEEE
Confidence 44566777766778775 566643321100 00000011222221 33333458999999999999999987555554
No 237
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=83.89 E-value=0.59 Score=40.66 Aligned_cols=66 Identities=9% Similarity=0.067 Sum_probs=37.2
Q ss_pred HHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHH-HHh-CCCeEEecCCCHHHHHHHHHhcCCc
Q 025564 174 LEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKF-EKL-GGEVRWMGKPDKVVQLLCSLSSSVI 242 (251)
Q Consensus 174 l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~-~~~-g~~~~~~GKP~~~~~~~a~~~l~~~ 242 (251)
....++.+.++|.++ |+||........ .+..-.+...+ ... +.+....+||+|.+|..+++++|+.
T Consensus 106 ~~elL~~L~~~g~~l~I~T~~~~~~~~~---~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~ 174 (267)
T PRK13478 106 VLEVIAALRARGIKIGSTTGYTREMMDV---VVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVY 174 (267)
T ss_pred HHHHHHHHHHCCCEEEEEcCCcHHHHHH---HHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCC
Confidence 466677767788876 556544422110 00000011111 111 3344456899999999999999985
No 238
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=83.79 E-value=1.2 Score=40.52 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=38.2
Q ss_pred cccCCCcc--CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 40 VLHDGKKP--YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 40 vL~~g~~~--~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
+.+.|.+| .|+..++++.+++.|+.+.+.||...-.++..+.|.+.|+.
T Consensus 57 v~~~GGEPll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~~g~~ 107 (358)
T TIGR02109 57 LHFSGGEPLARPDLVELVAHARRLGLYTNLITSGVGLTEARLDALADAGLD 107 (358)
T ss_pred EEEeCccccccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHHHhCCCC
Confidence 33455554 48999999999999999999999876555677788887765
No 239
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=83.57 E-value=3.9 Score=30.17 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=46.2
Q ss_pred CccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
..+.+++|+-||-+-...-+.-..++.+.++++|.++.++--+ .++.+.|+..|+..
T Consensus 40 ~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~----~~v~~~l~~~gl~~ 96 (109)
T cd07041 40 RARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIR----PEVAQTLVELGIDL 96 (109)
T ss_pred CCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCC----HHHHHHHHHhCCCh
Confidence 5789999999999988876666777888899999998887633 34678888899876
No 240
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=82.94 E-value=0.97 Score=37.62 Aligned_cols=73 Identities=18% Similarity=0.101 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhCCCc-EEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhc-CCceEEEEee
Q 025564 173 DLEKILEICASKKIP-MVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSS-SVIILFLIFL 249 (251)
Q Consensus 173 ~l~~a~~~~~~~g~~-li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l-~~~~~~~~~~ 249 (251)
.....++.+.++ .+ .++||........ .+..-.+...+... +....-..||+|.+|+.+++++ ++++-=+||+
T Consensus 101 g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~---~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~i 176 (224)
T TIGR02254 101 GAFELMENLQQK-FRLYIVTNGVRETQYK---RLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVLMI 176 (224)
T ss_pred cHHHHHHHHHhc-CcEEEEeCCchHHHHH---HHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheEEE
Confidence 345566665556 55 4667754322110 01111122233332 3344456799999999999999 9887444443
No 241
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=82.65 E-value=4.8 Score=30.36 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=51.2
Q ss_pred CChHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 19 NGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 19 ~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
+.+.+.+...+.+.+++|+.||=+.+.--.--...+++.++..|..++++..++ ++++.+...|++..
T Consensus 33 e~~~~~~~~~~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~i~p----~v~~~~~~~gl~~~ 100 (117)
T COG1366 33 ETLLEVIAASGARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVGIQP----EVARTLELTGLDKS 100 (117)
T ss_pred HHHHHHHhcCCCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEEeCCH----HHHHHHHHhCchhh
Confidence 344444442345669999999999888777666778889999999988888643 46678888999865
No 242
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=82.61 E-value=1.2 Score=36.12 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=25.1
Q ss_pred HHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564 210 LASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII 243 (251)
Q Consensus 210 i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~ 243 (251)
+...++.. +.+....+||+|.+|+.+++++++++
T Consensus 125 l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~ 159 (188)
T PRK10725 125 LRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQP 159 (188)
T ss_pred cHhHceEEEehhhccCCCCChHHHHHHHHHcCCCH
Confidence 33444442 44445578999999999999999876
No 243
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=82.58 E-value=4.1 Score=28.97 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=48.6
Q ss_pred hHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 21 LRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 21 ~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
+.+..+ .+.+.+++|+.++=+-+...+--..++.+.++++|..+.+..-+ .++.+.|+..|+...
T Consensus 30 ~~~~~~-~~~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i~~~~----~~~~~~l~~~gl~~~ 94 (99)
T cd07043 30 LEELLA-EGPRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVLVNVS----PAVRRVLELTGLDRL 94 (99)
T ss_pred HHHHHH-cCCCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEEEcCC----HHHHHHHHHhCccee
Confidence 444444 12589999999999888888888888999999999987766532 346678888888753
No 244
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=82.44 E-value=1.1 Score=37.01 Aligned_cols=66 Identities=17% Similarity=-0.009 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564 175 EKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL 244 (251)
Q Consensus 175 ~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~ 244 (251)
...++.+.++|.++ |+||........ .+..-.+...++.. +.+...- ||+|.+|..+++++++++-
T Consensus 112 ~~~L~~l~~~g~~~~i~T~~~~~~~~~---~l~~~gl~~~f~~~~~~~~~~~-KP~p~~~~~~~~~~~~~~~ 179 (197)
T TIGR01548 112 KGLLRELHRAPKGMAVVTGRPRKDAAK---FLTTHGLEILFPVQIWMEDCPP-KPNPEPLILAAKALGVEAC 179 (197)
T ss_pred HHHHHHHHHcCCcEEEECCCCHHHHHH---HHHHcCchhhCCEEEeecCCCC-CcCHHHHHHHHHHhCcCcc
Confidence 45666666678876 677765543221 01111122333332 3332223 9999999999999998864
No 245
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=82.27 E-value=1.4 Score=40.58 Aligned_cols=81 Identities=26% Similarity=0.322 Sum_probs=54.1
Q ss_pred CccEEEEeccccccCCC-------------ccCccHHHHHHHHHHCCCeEEEEeCCC---CCc-------hhHHHHhHhC
Q 025564 29 RFKAWLLDQFGVLHDGK-------------KPYPGAISTLEMLATTGAKMVVISNSS---RRA-------STTIDKLKSL 85 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~-------------~~~pGa~e~L~~L~~~G~~v~ivTN~s---~~~-------~~~~~~L~~~ 85 (251)
..+.+.||+||||.+.. -.+|.+..=|+.|.+.|+.++|.||.. +.. ..+.....++
T Consensus 74 ~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl 153 (422)
T KOG2134|consen 74 GSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANL 153 (422)
T ss_pred CcceEEEecCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhc
Confidence 56889999999998743 346778888999999999999999975 211 1233445667
Q ss_pred CCCCccccceee-----chhhHHHHHhcc
Q 025564 86 GFDPSLFAGAIT-----SGELTHQYLLRR 109 (251)
Q Consensus 86 Gl~~~~~~~Iit-----s~~~~~~~L~~~ 109 (251)
|++...+..++- +...+.+|+++.
T Consensus 154 ~vPi~~~~A~~~~~yRKP~tGMwe~~~~~ 182 (422)
T KOG2134|consen 154 GVPIQLLAAIIKGKYRKPSTGMWEFLKRL 182 (422)
T ss_pred CCceEEeeeccCCcccCcchhHHHHHHHH
Confidence 777542222222 234456666643
No 246
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=82.25 E-value=3.3 Score=33.51 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=48.1
Q ss_pred HHhcccCccEEEEeccccccC--CCccCccHHHHHHHHHHC-C-CeEEEEeCCCCC-----chhHHHHhH-hCCCCCc
Q 025564 23 HIAETRRFKAWLLDQFGVLHD--GKKPYPGAISTLEMLATT-G-AKMVVISNSSRR-----ASTTIDKLK-SLGFDPS 90 (251)
Q Consensus 23 ~~~~~~~~~~~l~D~DGvL~~--g~~~~pGa~e~L~~L~~~-G-~~v~ivTN~s~~-----~~~~~~~L~-~~Gl~~~ 90 (251)
++..+..+++++||=|.++.- ....+|.-..-+++++.. | +.++++||+... ..+.++.|+ +.|++..
T Consensus 36 ~I~~~~~ikavVlDKDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVl 113 (190)
T KOG2961|consen 36 EILKRKGIKAVVLDKDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVL 113 (190)
T ss_pred chhhccCceEEEEcCCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCceE
Confidence 444444799999999999985 445678888888888765 4 789999998532 123445553 4788764
No 247
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=81.81 E-value=6.4 Score=35.40 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=32.0
Q ss_pred CCCcc--CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCC
Q 025564 43 DGKKP--YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF 87 (251)
Q Consensus 43 ~g~~~--~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl 87 (251)
.|.+| .|...++++.++++|+.+.+.||.....+. ...+...|.
T Consensus 79 ~GGEPLL~pdl~eiv~~~~~~g~~v~l~TNG~ll~~~-~~~l~~~~~ 124 (318)
T TIGR03470 79 PGGEPLLHPEIDEIVRGLVARKKFVYLCTNALLLEKK-LDKFEPSPY 124 (318)
T ss_pred eCccccccccHHHHHHHHHHcCCeEEEecCceehHHH-HHHHHhCCC
Confidence 45554 489999999999999999999998754333 344555443
No 248
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=81.74 E-value=1 Score=36.53 Aligned_cols=72 Identities=14% Similarity=0.065 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCCCcEEEccCCccccccCceeeCchHHHHHHHHh-CCCeEE----ecCCCHHHHHHHHHhcCCceEEE
Q 025564 172 QDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRW----MGKPDKVVQLLCSLSSSVIILFL 246 (251)
Q Consensus 172 ~~l~~a~~~~~~~g~~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~----~GKP~~~~~~~a~~~l~~~~~~~ 246 (251)
+.+...++.+ + ....++||......... +..-.+...+... +.+... ..||+|.+|+.+++++|++|-=.
T Consensus 87 ~g~~~~L~~L-~-~~~~i~Tn~~~~~~~~~---l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~ 161 (184)
T TIGR01993 87 PELRNLLLRL-P-GRKIIFTNGDRAHARRA---LNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPERA 161 (184)
T ss_pred HHHHHHHHhC-C-CCEEEEeCCCHHHHHHH---HHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCccce
Confidence 4456666653 2 44567777665422110 1110122233321 222222 25999999999999999887533
Q ss_pred Ee
Q 025564 247 IF 248 (251)
Q Consensus 247 ~~ 248 (251)
++
T Consensus 162 l~ 163 (184)
T TIGR01993 162 IF 163 (184)
T ss_pred EE
Confidence 33
No 249
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=81.47 E-value=3.4 Score=33.81 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=35.5
Q ss_pred ccccccCCCccC--ccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCC
Q 025564 37 QFGVLHDGKKPY--PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF 87 (251)
Q Consensus 37 ~DGvL~~g~~~~--pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl 87 (251)
+.++.+.|.+|. |...++++.+++.|+.+.+.||... .+..+.+.+.|+
T Consensus 63 ~~~i~~sGGEPll~~~l~~li~~~~~~g~~v~i~TNg~~--~~~l~~l~~~g~ 113 (191)
T TIGR02495 63 IDGVVITGGEPTLQAGLPDFLRKVRELGFEVKLDTNGSN--PRVLEELLEEGL 113 (191)
T ss_pred CCeEEEECCcccCcHhHHHHHHHHHHCCCeEEEEeCCCC--HHHHHHHHhcCC
Confidence 455666676664 6788999999999999999999873 234455555663
No 250
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=80.24 E-value=4.9 Score=29.39 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=49.9
Q ss_pred CChHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 19 NGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 19 ~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
+.+.+..+....+.+++|+.++=+-+..-+.-..++.+.++++|.++.++.-+ .++.+.|+..|+...
T Consensus 32 ~~l~~~~~~~~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~~~l~~~~----~~~~~~l~~~~l~~~ 99 (108)
T TIGR00377 32 EKVTPAAERTGPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQLVLVSVS----PRVARLLDITGLLRI 99 (108)
T ss_pred HHHHHHHHhcCCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCEEEEEeCC----HHHHHHHHHhChhhe
Confidence 34445544115789999999999888877777778888899999988777643 346677888888754
No 251
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=80.14 E-value=5.9 Score=36.36 Aligned_cols=77 Identities=13% Similarity=0.047 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhCCCcE-EEccCCccccccCc-eeeC--chHHHHHHHHhCCC-------------eEEecCCCHHHHH
Q 025564 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARA-LRVM--PGTLASKFEKLGGE-------------VRWMGKPDKVVQL 233 (251)
Q Consensus 171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~-~~~~--~G~i~~~~~~~g~~-------------~~~~GKP~~~~~~ 233 (251)
|+.+..+++++.++|.++ |+||.+-.-..... ..+. ...+...++..+-. ....+||+|.++.
T Consensus 32 ~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~fd~i~i~~~~~sd~~~~rKP~p~~l~ 111 (354)
T PRK05446 32 EPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIKFDEVLICPHFPEDNCSCRKPKTGLVE 111 (354)
T ss_pred CcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCceeeEEEeCCcCcccCCCCCCCHHHHH
Confidence 345577788777788886 77785321100000 0111 22333444433221 1236799999999
Q ss_pred HHHHhcCCce--EEEE
Q 025564 234 LCSLSSSVII--LFLI 247 (251)
Q Consensus 234 ~a~~~l~~~~--~~~~ 247 (251)
.+++++++.+ .+||
T Consensus 112 ~a~~~l~v~~~~svmI 127 (354)
T PRK05446 112 EYLAEGAIDLANSYVI 127 (354)
T ss_pred HHHHHcCCCcccEEEE
Confidence 9999887754 5555
No 252
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=80.01 E-value=3.5 Score=42.71 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=43.5
Q ss_pred ccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (251)
Q Consensus 39 GvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~ 100 (251)
|.+.-.+++.|++.+++++|+++|+++.++|.....+ ....-+++|+.... ..++++.+
T Consensus 572 Gli~~~Dplr~~~~~aI~~l~~aGI~v~miTGD~~~t--A~~iA~~~GI~~~~-~~vi~G~~ 630 (941)
T TIGR01517 572 GVVGIKDPLRPGVREAVQECQRAGITVRMVTGDNIDT--AKAIARNCGILTFG-GLAMEGKE 630 (941)
T ss_pred EEeeccCCCchhHHHHHHHHHHCCCEEEEECCCChHH--HHHHHHHcCCCCCC-ceEeeHHH
Confidence 6666778999999999999999999999999876433 22444568887542 44555543
No 253
>PTZ00445 p36-lilke protein; Provisional
Probab=79.77 E-value=6.5 Score=33.50 Aligned_cols=79 Identities=15% Similarity=0.115 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhCCCcE-EEccCCccc-cccCceeeCchH--HHHHHHHhCCC---------------------eEEecC
Q 025564 172 QDLEKILEICASKKIPM-VVANPDYVT-VEARALRVMPGT--LASKFEKLGGE---------------------VRWMGK 226 (251)
Q Consensus 172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~-~~~~~~~~~~G~--i~~~~~~~g~~---------------------~~~~GK 226 (251)
+++...+..+.+.|.++ |+|-.|... |.+...+.-.|. +.++++++..+ +.-+=|
T Consensus 78 pefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~K 157 (219)
T PTZ00445 78 PDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDA 157 (219)
T ss_pred HHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccC
Confidence 34566666666789986 667666644 554444444443 44566643221 125669
Q ss_pred CCHHH--H--HHHHHhcCCceEEEEeec
Q 025564 227 PDKVV--Q--LLCSLSSSVIILFLIFLD 250 (251)
Q Consensus 227 P~~~~--~--~~a~~~l~~~~~~~~~~~ 250 (251)
|.|.+ | +.++++.|+.|-=++|+|
T Consensus 158 Pdp~iK~yHle~ll~~~gl~peE~LFID 185 (219)
T PTZ00445 158 PMPLDKSYHLKQVCSDFNVNPDEILFID 185 (219)
T ss_pred CCccchHHHHHHHHHHcCCCHHHeEeec
Confidence 99999 9 999999999999999987
No 254
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=79.75 E-value=0.79 Score=38.27 Aligned_cols=73 Identities=22% Similarity=0.211 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceEEEEe
Q 025564 173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIILFLIF 248 (251)
Q Consensus 173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~ 248 (251)
....+++.+.++|.++ ++||.........-...+ +...+... +.+....+||+|.+|+.+++++++++-=.++
T Consensus 97 g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~---l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~ 171 (226)
T PRK13222 97 GVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALG---IADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEMLF 171 (226)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcC---CccCccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheEE
Confidence 4467777766678765 666665432211000011 11122221 3444457899999999999999987643333
No 255
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=79.72 E-value=1.7 Score=36.93 Aligned_cols=57 Identities=23% Similarity=0.267 Sum_probs=47.1
Q ss_pred hhccCChHHHhcccCccEEEEeccccccCCCcc--CccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564 15 FQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKP--YPGAISTLEMLATTGAKMVVISNSSR 73 (251)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~l~D~DGvL~~g~~~--~pGa~e~L~~L~~~G~~v~ivTN~s~ 73 (251)
+....++.++++ +++..-...-||...|.+| .++..++++.|+++|+++.+=||.+-
T Consensus 52 ~~~~~~~~~I~~--~i~~~~~~~~~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lETngti 110 (212)
T COG0602 52 PGTPMSADEILA--DIKSLGYKARGVSLTGGEPLLQPNLLELLELLKRLGFRIALETNGTI 110 (212)
T ss_pred CCCccCHHHHHH--HHHhcCCCcceEEEeCCcCCCcccHHHHHHHHHhCCceEEecCCCCc
Confidence 445567788888 7777666666999999988 45899999999999999999999874
No 256
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=79.50 E-value=1.7 Score=41.20 Aligned_cols=50 Identities=30% Similarity=0.370 Sum_probs=29.8
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCCCC-chhHHHHhHhCCC------C--Cccccceeechh
Q 025564 48 YPGAISTLEMLATTGAKMVVISNSSRR-ASTTIDKLKSLGF------D--PSLFAGAITSGE 100 (251)
Q Consensus 48 ~pGa~e~L~~L~~~G~~v~ivTN~s~~-~~~~~~~L~~~Gl------~--~~~~~~Iits~~ 100 (251)
-|....+|++|++.|+++.++|||... ...+...+ +|- + .. |+-||+.+.
T Consensus 185 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl--~g~~~~~~~dW~dl-FDvVIv~A~ 243 (448)
T PF05761_consen 185 DPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYL--LGPFLGEDPDWRDL-FDVVIVDAR 243 (448)
T ss_dssp -CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHH--CGCCSSTTT-GGGC-ECEEEES--
T ss_pred CchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhc--cCCCCCCCCChhhh-eeEEEEcCC
Confidence 368889999999999999999998742 22233333 444 3 34 677777654
No 257
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=79.27 E-value=1.3 Score=46.31 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceEE
Q 025564 172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIILF 245 (251)
Q Consensus 172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~~ 245 (251)
..+...++++.++|.++ |++|.+.......-...+- ....++.. +.+....+||+|.+|+.+++++++.|-=
T Consensus 164 pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl--~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e 237 (1057)
T PLN02919 164 PGALELITQCKNKGLKVAVASSADRIKVDANLAAAGL--PLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSE 237 (1057)
T ss_pred ccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCC--ChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCccc
Confidence 34567777777789886 6677665432210000111 01223332 4455567899999999999999987643
No 258
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=79.27 E-value=4.8 Score=29.32 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=46.9
Q ss_pred CccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
..+.+++|+-+|-+-+..-+--..++.+.++++|.++.++.-+ .++.+.|+..|+..
T Consensus 38 ~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~----~~v~~~l~~~gl~~ 94 (100)
T cd06844 38 AGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVLTGIS----PAVRITLTESGLDK 94 (100)
T ss_pred CCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEECCC----HHHHHHHHHhCchh
Confidence 4689999999999998888888888999999999998887632 34667888888864
No 259
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=78.43 E-value=1.2 Score=37.59 Aligned_cols=72 Identities=19% Similarity=0.194 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce--EEEE
Q 025564 173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII--LFLI 247 (251)
Q Consensus 173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~--~~~~ 247 (251)
....++..+..+|.++ |+||........ .+..-.+...+... |......-||+|..+..+++++++.| ..||
T Consensus 93 gv~e~L~~L~~~g~~l~i~T~k~~~~~~~---~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l~V 168 (220)
T COG0546 93 GVKELLAALKSAGYKLGIVTNKPERELDI---LLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEALMV 168 (220)
T ss_pred CHHHHHHHHHhCCCeEEEEeCCcHHHHHH---HHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheEEE
Confidence 4466777777889776 666644432211 11111222233332 33445566999999999999999994 5665
No 260
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=76.73 E-value=3.4 Score=42.62 Aligned_cols=57 Identities=14% Similarity=0.281 Sum_probs=42.2
Q ss_pred ccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (251)
Q Consensus 39 GvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~ 100 (251)
|.+.-.+++.|++.++++.|+++|+++.++|.....+ ....-+++|+.. ++++++.+
T Consensus 543 Gli~~~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~t--A~~IA~~lGI~~---~~v~~G~e 599 (902)
T PRK10517 543 GYIAFLDPPKETTAPALKALKASGVTVKILTGDSELV--AAKVCHEVGLDA---GEVLIGSD 599 (902)
T ss_pred ehHhhhCcchhhHHHHHHHHHHCCCEEEEEcCCCHHH--HHHHHHHcCCCc---cCceeHHH
Confidence 5555677899999999999999999999999866432 234446788852 45666554
No 261
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=76.66 E-value=1.8 Score=36.45 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=16.1
Q ss_pred ccEEEEeccccccCCCccC
Q 025564 30 FKAWLLDQFGVLHDGKKPY 48 (251)
Q Consensus 30 ~~~~l~D~DGvL~~g~~~~ 48 (251)
.+..+||+||||++++...
T Consensus 5 ~~la~FDfDgTLt~~ds~~ 23 (210)
T TIGR01545 5 KRIIFFDLDGTLHQQDMFG 23 (210)
T ss_pred CcEEEEcCCCCCccCccHH
Confidence 4789999999999988654
No 262
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=76.60 E-value=5.9 Score=35.73 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=35.5
Q ss_pred ccccCCCccC--ccHHHHHHHHHHCCC--eEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 39 GVLHDGKKPY--PGAISTLEMLATTGA--KMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 39 GvL~~g~~~~--pGa~e~L~~L~~~G~--~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
.+.+.|.+|+ ++..++++++++.+. .+.+.||..... +..+.|.+.|+.
T Consensus 64 ~I~~tGGEPllr~dl~~li~~i~~~~~l~~i~itTNG~ll~-~~~~~L~~aGl~ 116 (329)
T PRK13361 64 KIRLTGGEPLVRRGCDQLVARLGKLPGLEELSLTTNGSRLA-RFAAELADAGLK 116 (329)
T ss_pred EEEEECcCCCccccHHHHHHHHHhCCCCceEEEEeChhHHH-HHHHHHHHcCCC
Confidence 3444456554 889999999998764 788999976533 366788888876
No 263
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=76.00 E-value=3.8 Score=41.36 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=38.8
Q ss_pred cccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 38 FGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 38 DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
=|.+.-.+++.|++.+++++|+++|+++.++|.....+ ....-+++|+..
T Consensus 434 ~Gli~l~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~t--A~~IA~~lGI~~ 483 (755)
T TIGR01647 434 LGLLPLFDPPRHDTKETIERARHLGVEVKMVTGDHLAI--AKETARRLGLGT 483 (755)
T ss_pred EEEeeccCCChhhHHHHHHHHHHCCCeEEEECCCCHHH--HHHHHHHcCCCC
Confidence 36666788999999999999999999999999876432 223445688853
No 264
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=75.61 E-value=1 Score=37.09 Aligned_cols=14 Identities=21% Similarity=0.180 Sum_probs=12.5
Q ss_pred EEEeccccccCCCc
Q 025564 33 WLLDQFGVLHDGKK 46 (251)
Q Consensus 33 ~l~D~DGvL~~g~~ 46 (251)
++||+||||++++.
T Consensus 2 a~FD~DgTL~~~~s 15 (202)
T TIGR01490 2 AFFDFDGTLTAKDT 15 (202)
T ss_pred eEEccCCCCCCCch
Confidence 68999999999865
No 265
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=74.94 E-value=4.8 Score=41.62 Aligned_cols=49 Identities=18% Similarity=0.345 Sum_probs=37.9
Q ss_pred ccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 39 GvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
|.+--.+++.|++.+++++|+++|+++.++|+....+ .....+++|+..
T Consensus 530 Gl~~~~Dplr~~v~e~I~~l~~aGI~v~miTGD~~~t--A~~ia~~~gi~~ 578 (917)
T TIGR01116 530 GVVGMLDPPRPEVADAIEKCRTAGIRVIMITGDNKET--AEAICRRIGIFS 578 (917)
T ss_pred EEeeeeCCCchhHHHHHHHHHHCCCEEEEecCCCHHH--HHHHHHHcCCCC
Confidence 4455567899999999999999999999999866322 335556788864
No 266
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=74.49 E-value=9.6 Score=34.24 Aligned_cols=59 Identities=10% Similarity=0.188 Sum_probs=39.7
Q ss_pred CccEEEEeccc-------cccCCCccCccHHHHHHHHHHCCCeEEEEeCCC-CCchhHHHHhHhCCC
Q 025564 29 RFKAWLLDQFG-------VLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGF 87 (251)
Q Consensus 29 ~~~~~l~D~DG-------vL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s-~~~~~~~~~L~~~Gl 87 (251)
..+.+.+|+|. ...-..+-+|...+++++|+++|+++++..+.. ......-+.+.+.|+
T Consensus 39 P~d~i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~ 105 (319)
T cd06591 39 PLDVIVQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGY 105 (319)
T ss_pred CccEEEEechhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCE
Confidence 46899999863 332344578999999999999999998877543 111222344455554
No 267
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=74.45 E-value=1.8 Score=35.00 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=12.1
Q ss_pred EEEeccccccCCC
Q 025564 33 WLLDQFGVLHDGK 45 (251)
Q Consensus 33 ~l~D~DGvL~~g~ 45 (251)
++||+||||+.+.
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6899999999988
No 268
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=73.42 E-value=3.1 Score=35.35 Aligned_cols=47 Identities=19% Similarity=0.124 Sum_probs=36.1
Q ss_pred eccccccCCCccC--cc-HHHHHHHHHHCCCeEEEEeCCCCCchhHHHHh
Q 025564 36 DQFGVLHDGKKPY--PG-AISTLEMLATTGAKMVVISNSSRRASTTIDKL 82 (251)
Q Consensus 36 D~DGvL~~g~~~~--pG-a~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L 82 (251)
.-.||-+.|.+|. +. +.++++.+++.|+++++-||...+.+.+.+.+
T Consensus 38 sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~ 87 (213)
T PRK10076 38 SGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLA 87 (213)
T ss_pred CCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHH
Confidence 4579999999874 44 57999999999999999999876544443333
No 269
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=73.26 E-value=5.8 Score=40.94 Aligned_cols=57 Identities=19% Similarity=0.320 Sum_probs=41.4
Q ss_pred ccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (251)
Q Consensus 39 GvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~ 100 (251)
|.+.-.+++.|++.+++++|+++|+++.++|.....+ ....-+++|+.. ++++++.+
T Consensus 543 Gli~l~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~t--A~aIA~~lGI~~---~~vi~G~e 599 (903)
T PRK15122 543 GFLTFLDPPKESAAPAIAALRENGVAVKVLTGDNPIV--TAKICREVGLEP---GEPLLGTE 599 (903)
T ss_pred EEEeccCccHHHHHHHHHHHHHCCCeEEEECCCCHHH--HHHHHHHcCCCC---CCccchHh
Confidence 5566677899999999999999999999999876422 223445688852 34554443
No 270
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=72.89 E-value=14 Score=30.68 Aligned_cols=40 Identities=13% Similarity=0.234 Sum_probs=27.1
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhH-hCCCCCc
Q 025564 51 AISTLEMLATTGAKMVVISNSSR-RASTTIDKLK-SLGFDPS 90 (251)
Q Consensus 51 a~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~-~~Gl~~~ 90 (251)
|.++++.=+++|-.++|+|..++ ..+.+.+.|. .+.+...
T Consensus 119 A~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m 160 (237)
T COG3700 119 ARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNM 160 (237)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCC
Confidence 34466666788999999999875 3445556664 4666543
No 271
>COG2604 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.44 E-value=26 Score=34.20 Aligned_cols=100 Identities=14% Similarity=0.162 Sum_probs=55.5
Q ss_pred cccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCCCcEEEcc---CCcccccc-Cc-eee
Q 025564 131 AISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVAN---PDYVTVEA-RA-LRV 205 (251)
Q Consensus 131 ~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g~~li~~n---~D~~~~~~-~~-~~~ 205 (251)
+..|.++|+ .||+|.+.+. ..+.|+-++... ..+.|++.++ |..+--.. .. +..
T Consensus 259 l~~L~k~GI-------kPDyVc~ld~----------~di~~e~~~n~~----~k~ip~~~~~~~h~~vv~~~kg~k~~~~ 317 (594)
T COG2604 259 LPILAKHGI-------KPDYVCSLDP----------DDIAYEFFQNDF----NKDIPLILASITHPRVVEYLKGNKIFFF 317 (594)
T ss_pred chHHHhcCC-------CCCeEEEecc----------hHHHHHHHhccc----CCCcceeeeccccHHHHHhhccCcEEEE
Confidence 557777776 5788877432 123344444333 2577887653 33322222 22 455
Q ss_pred CchHHHHHHHHhCCCeEEecCCCHHHHHHHHHhcCCceEEEEeecC
Q 025564 206 MPGTLASKFEKLGGEVRWMGKPDKVVQLLCSLSSSVIILFLIFLDF 251 (251)
Q Consensus 206 ~~G~i~~~~~~~g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~~~~ 251 (251)
..|.+.+.+--..-.....|.-=..+--..+-.+|.++|+||-.|+
T Consensus 318 ~~~~~~~~~~l~d~gyi~~G~SVah~~~~LA~~lg~k~IIfIGQDl 363 (594)
T COG2604 318 RDGGFSARFNLNDFGYIDTGGSVAHMCYELAVYLGFKNIIFIGQDL 363 (594)
T ss_pred ecchHHHHhccCCcceeeccccHHHHHHHHHHHhCCCcEEEEehhh
Confidence 6666444443223345667743344444444568999999998885
No 272
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=71.12 E-value=13 Score=33.61 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=24.4
Q ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564 47 PYPGAISTLEMLATTGAKMVVISNSSR 73 (251)
Q Consensus 47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~ 73 (251)
..|...++++.+++.|+.+.+.||...
T Consensus 143 L~p~l~eli~~~k~~Gi~~~L~TNG~~ 169 (322)
T PRK13762 143 LYPYLPELIEEFHKRGFTTFLVTNGTR 169 (322)
T ss_pred chhhHHHHHHHHHHcCCCEEEECCCCC
Confidence 458999999999999999999999874
No 273
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=70.69 E-value=4 Score=35.02 Aligned_cols=53 Identities=17% Similarity=0.322 Sum_probs=41.3
Q ss_pred CCCccCccHHHHHHHHHHCCC-eEEEEeCCCCCchhHHHHhHhCCCCCccccceeec
Q 025564 43 DGKKPYPGAISTLEMLATTGA-KMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS 98 (251)
Q Consensus 43 ~g~~~~pGa~e~L~~L~~~G~-~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits 98 (251)
++....||..++++.+++.|- .++|+|.+...- +...|+++|+... |.+|+|.
T Consensus 81 r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfF--Ie~~Lea~~~~d~-F~~IfTN 134 (256)
T KOG3120|consen 81 RSIPIVPGMVRLIKSAAKLGCFELIIVSDANSFF--IEEILEAAGIHDL-FSEIFTN 134 (256)
T ss_pred hcCCCCccHHHHHHHHHhCCCceEEEEecCchhH--HHHHHHHccHHHH-HHHHhcC
Confidence 355678999999999999986 899999865422 5577889999877 6666664
No 274
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=68.81 E-value=16 Score=29.71 Aligned_cols=56 Identities=7% Similarity=-0.133 Sum_probs=36.7
Q ss_pred HHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHhCCC-eEEecCCCHHHHHHHHHhcCCce
Q 025564 176 KILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGE-VRWMGKPDKVVQLLCSLSSSVII 243 (251)
Q Consensus 176 ~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~g~~-~~~~GKP~~~~~~~a~~~l~~~~ 243 (251)
.+++.+.++|.++ |+||..... ....++..+-. .....||.|..++.+++++++.+
T Consensus 41 ~~~~~L~~~Gi~laIiT~k~~~~------------~~~~l~~lgi~~~f~~~kpkp~~~~~~~~~l~~~~ 98 (169)
T TIGR02726 41 MGVIVLQLCGIDVAIITSKKSGA------------VRHRAEELKIKRFHEGIKKKTEPYAQMLEEMNISD 98 (169)
T ss_pred HHHHHHHHCCCEEEEEECCCcHH------------HHHHHHHCCCcEEEecCCCCHHHHHHHHHHcCcCH
Confidence 3555567889886 666644321 22455555543 23345899999999999999754
No 275
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=68.50 E-value=11 Score=39.76 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=37.0
Q ss_pred ccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 39 GvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
|.+.-.+++.|++.++++.|+++|+++.++|.....+ ....-+++|+.
T Consensus 639 G~~~~~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~t--A~~iA~~~Gi~ 686 (1053)
T TIGR01523 639 GLIGIYDPPRNESAGAVEKCHQAGINVHMLTGDFPET--AKAIAQEVGII 686 (1053)
T ss_pred EEEeeecCCchhHHHHHHHHHHCCCEEEEECCCCHHH--HHHHHHHcCCC
Confidence 5555567889999999999999999999999876432 22444567885
No 276
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=68.42 E-value=8.1 Score=39.70 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=41.0
Q ss_pred ccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeech
Q 025564 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (251)
Q Consensus 39 GvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~ 99 (251)
|.+.-.+.+.|++.+++++|+++|+++.++|.....+ ....-+++|+.. +.++++.
T Consensus 508 Gli~l~Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~t--A~aIA~~lGI~~---~~v~~g~ 563 (867)
T TIGR01524 508 GFLGFLDPPKESTKEAIAALFKNGINVKVLTGDNEIV--TARICQEVGIDA---NDFLLGA 563 (867)
T ss_pred EEEEeeCCCchhHHHHHHHHHHCCCEEEEEcCCCHHH--HHHHHHHcCCCC---CCeeecH
Confidence 5556677899999999999999999999999866322 234445688852 3455443
No 277
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=68.00 E-value=4.1 Score=39.11 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=16.8
Q ss_pred ccEEEEeccccccCCCccCc
Q 025564 30 FKAWLLDQFGVLHDGKKPYP 49 (251)
Q Consensus 30 ~~~~l~D~DGvL~~g~~~~p 49 (251)
-+.++||+||||++....+|
T Consensus 22 ~~~~~FDfDGTLt~~~s~f~ 41 (497)
T PLN02177 22 NQTVAADLDGTLLISRSAFP 41 (497)
T ss_pred ccEEEEecCCcccCCCCccH
Confidence 46899999999999776666
No 278
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=67.89 E-value=18 Score=32.52 Aligned_cols=58 Identities=26% Similarity=0.389 Sum_probs=41.1
Q ss_pred ccEEEEecc-----------ccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCC
Q 025564 30 FKAWLLDQF-----------GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGF 87 (251)
Q Consensus 30 ~~~~l~D~D-----------GvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl 87 (251)
.+++.+|+| |+..-..+-+|.-.++++.|+++|+++++..+..- .....-+.+.+.|+
T Consensus 40 ~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~g~ 109 (317)
T cd06598 40 LDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKAGA 109 (317)
T ss_pred ceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhCCC
Confidence 578999975 23433456789999999999999999999887542 11223345666665
No 279
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=67.77 E-value=35 Score=34.68 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=57.8
Q ss_pred HHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHh-CCCCCccccce--eechhhHHHHHhccCchhhhhcCCeE--EEecc
Q 025564 52 ISTLEMLATTGAKMVVISNSSRRASTTIDKLKS-LGFDPSLFAGA--ITSGELTHQYLLRRDDAWFAALGRSC--IHMTW 126 (251)
Q Consensus 52 ~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~-~Gl~~~~~~~I--its~~~~~~~L~~~~~~~~~~~g~~~--~~~g~ 126 (251)
..+|..|++.|.+|.|.|-=++ +.+.|+. +-+..+.+..+ =++++.-..-++..+.+ +.+. |+++.
T Consensus 477 DkLL~~Lk~~GhRVLIFSQmt~----mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~-----~s~~FiFlLST 547 (971)
T KOG0385|consen 477 DKLLPKLKEQGHRVLIFSQMTR----MLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAP-----PSEKFIFLLST 547 (971)
T ss_pred HHHHHHHHhCCCeEEEeHHHHH----HHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCC-----CcceEEEEEec
Confidence 4588899999999999985333 2233332 22222211111 12233333344444443 2333 44332
Q ss_pred CCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHH
Q 025564 127 SDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEI 180 (251)
Q Consensus 127 ~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~ 180 (251)
-..++|+.++ .+|.||+-++ +|.++.+.+-+.+|-+.
T Consensus 548 ------RAGGLGINL~----aADtVIlyDS-------DWNPQ~DLQAmDRaHRI 584 (971)
T KOG0385|consen 548 ------RAGGLGINLT----AADTVILYDS-------DWNPQVDLQAMDRAHRI 584 (971)
T ss_pred ------cccccccccc----cccEEEEecC-------CCCchhhhHHHHHHHhh
Confidence 2455788774 5788998766 56688888877777763
No 280
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=67.06 E-value=19 Score=32.14 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=35.3
Q ss_pred ccEEEEecc-----ccccCCCccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564 30 FKAWLLDQF-----GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 30 ~~~~l~D~D-----GvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s 72 (251)
++.+.+|.+ |...-..+-+|+.++++++|+++|.++++..+-.
T Consensus 46 ~d~i~iD~~w~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~ 93 (303)
T cd06592 46 NGQIEIDDNWETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPF 93 (303)
T ss_pred CCeEEeCCCccccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCe
Confidence 579999975 5554455679999999999999999999887754
No 281
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=67.04 E-value=11 Score=33.43 Aligned_cols=43 Identities=16% Similarity=0.170 Sum_probs=33.8
Q ss_pred ccEEEEeccc--------------cccCCCccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564 30 FKAWLLDQFG--------------VLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 30 ~~~~l~D~DG--------------vL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s 72 (251)
.+++.+|+|= +..-..+-+|+..++++.|+++|.++++...-.
T Consensus 41 ~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 41 LDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred ccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCC
Confidence 5899999872 222234678999999999999999999887643
No 282
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=66.97 E-value=5.2 Score=32.50 Aligned_cols=22 Identities=14% Similarity=-0.014 Sum_probs=19.2
Q ss_pred EecCCCHHHHHHHHHhcCCceE
Q 025564 223 WMGKPDKVVQLLCSLSSSVIIL 244 (251)
Q Consensus 223 ~~GKP~~~~~~~a~~~l~~~~~ 244 (251)
..+||+|.+|+.+++++++++-
T Consensus 100 ~~~KP~p~~~~~~~~~l~~~~~ 121 (181)
T PRK08942 100 DCRKPKPGMLLSIAERLNIDLA 121 (181)
T ss_pred cCCCCCHHHHHHHHHHcCCChh
Confidence 4589999999999999998763
No 283
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=66.54 E-value=15 Score=34.36 Aligned_cols=70 Identities=11% Similarity=0.044 Sum_probs=47.5
Q ss_pred eccccccCCC-c--cCccHHHHHHHHHHCCCeEEEE-eCCCC-CchhHHHHhHhCCCCCccccceeechhhHHHHH
Q 025564 36 DQFGVLHDGK-K--PYPGAISTLEMLATTGAKMVVI-SNSSR-RASTTIDKLKSLGFDPSLFAGAITSGELTHQYL 106 (251)
Q Consensus 36 D~DGvL~~g~-~--~~pGa~e~L~~L~~~G~~v~iv-TN~s~-~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L 106 (251)
+.+|+.+.|. . ..|.+.++++.+++.|+++++. ||.+. ...+..+++.++|++... -.+-+.+...+..+
T Consensus 73 ~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld~v~-iSvka~dpe~h~kl 147 (404)
T TIGR03278 73 RDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVREVS-FTVFATDPELRREW 147 (404)
T ss_pred CCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCCEEE-EecccCCHHHHHHH
Confidence 4567666665 2 3589999999999999999996 99763 344566788888876431 23444444444443
No 284
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=66.07 E-value=9.3 Score=39.90 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=36.9
Q ss_pred ccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 39 GvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
|.+--.+++.|++.+++++|+++|+++.++|+.+.. ......+++|+.
T Consensus 561 Gli~i~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~--ta~~ia~~~gi~ 608 (997)
T TIGR01106 561 GLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPI--TAKAIAKGVGII 608 (997)
T ss_pred EEEeccCCChHHHHHHHHHHHHCCCeEEEECCCCHH--HHHHHHHHcCCC
Confidence 444456688999999999999999999999986632 234555667774
No 285
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=65.96 E-value=17 Score=35.08 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=41.2
Q ss_pred ccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 37 QFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 37 ~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
+-||++-.+...||.+|=+++||+.|++.+.+|....-+.. ..-++.|++.+
T Consensus 438 ~~GVI~LkDivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa--~IA~EAGVDdf 489 (681)
T COG2216 438 ILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAA--AIAAEAGVDDF 489 (681)
T ss_pred EEEEEEehhhcchhHHHHHHHHHhcCCeEEEEeCCCHHHHH--HHHHHhCchhh
Confidence 45888888999999999999999999999999986643322 33356788864
No 286
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=65.73 E-value=49 Score=29.79 Aligned_cols=41 Identities=10% Similarity=0.140 Sum_probs=33.3
Q ss_pred cHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 50 GAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 50 Ga~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
...+.++.+-+.+.|++|+|++-....++.+..++.+++..
T Consensus 70 ~r~~~~~~l~~~~~P~iIvt~~~~~p~~l~~~a~~~~ipll 110 (308)
T PRK05428 70 ERKERLKKLFSLEPPCIIVTRGLEPPPELLEAAKEAGIPLL 110 (308)
T ss_pred HHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHcCCcEE
Confidence 45667888888999999999987766667777888899875
No 287
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=64.56 E-value=9.5 Score=30.38 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=36.4
Q ss_pred ccCChHHHhcccCccEEEEeccccccCCCccC-ccHHHHHHHHHHCCCeEEEEeCCC
Q 025564 17 TLNGLRHIAETRRFKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~-pGa~e~L~~L~~~G~~v~ivTN~s 72 (251)
+.+.+.+.++ ++. -.+.||...|.+.. +...++++++++.|+++.+-||..
T Consensus 47 t~eel~~~I~--~~~---~~~~gVt~SGGEl~~~~l~~ll~~lk~~Gl~i~l~Tg~~ 98 (147)
T TIGR02826 47 TPEYLTKTLD--KYR---SLISCVLFLGGEWNREALLSLLKIFKEKGLKTCLYTGLE 98 (147)
T ss_pred CHHHHHHHHH--HhC---CCCCEEEEechhcCHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3344555555 333 22579988888844 557899999999999999999844
No 288
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=64.23 E-value=10 Score=33.14 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=29.2
Q ss_pred CccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR 73 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~ 73 (251)
..+++++..|. ...++|+.++++.|+++|. .+++||..+
T Consensus 131 ~~~~Vvv~~d~-----~~~y~~i~~~l~~L~~~g~-~~i~Tn~d~ 169 (279)
T TIGR01452 131 NVGAVVVGYDE-----HFSYAKLREACAHLREPGC-LFVATNRDP 169 (279)
T ss_pred CCCEEEEecCC-----CCCHHHHHHHHHHHhcCCC-EEEEeCCCC
Confidence 34555555443 3458999999999998887 789999875
No 289
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=64.17 E-value=7.1 Score=32.60 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=41.5
Q ss_pred hHHHhcccCccEEEEeccccccCC--------CccCccHHHHHHHHHHCCCeEEEEeCCCCC
Q 025564 21 LRHIAETRRFKAWLLDQFGVLHDG--------KKPYPGAISTLEMLATTGAKMVVISNSSRR 74 (251)
Q Consensus 21 ~~~~~~~~~~~~~l~D~DGvL~~g--------~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~ 74 (251)
+.+++++-+.+..+=-+.|-+|-. .+++|.|.++|++.+++|.+++|-|+.|-.
T Consensus 70 ~~~wiaed~K~t~lK~lQG~iWa~Gy~sgelkahlypDav~~ik~wk~~g~~vyiYSSGSV~ 131 (229)
T COG4229 70 LLEWIAEDSKDTPLKALQGMIWAHGYESGELKAHLYPDAVQAIKRWKALGMRVYIYSSGSVK 131 (229)
T ss_pred HHHHHhcccccchHHHHHhHHHHhccccCccccccCHhHHHHHHHHHHcCCcEEEEcCCCch
Confidence 345555334556666788888853 368999999999999999999999988753
No 290
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=63.29 E-value=14 Score=37.67 Aligned_cols=50 Identities=14% Similarity=0.343 Sum_probs=38.3
Q ss_pred ccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 39 GvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
|++-.-+.|.|++.++++.+++.|+++..+|..+..++ ...-++.|+...
T Consensus 577 GlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA--~AI~r~iGi~~~ 626 (972)
T KOG0202|consen 577 GLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETA--EAIAREIGIFSE 626 (972)
T ss_pred EEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHH--HHHHHHhCCCcC
Confidence 33434568999999999999999999999998775442 244456788765
No 291
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=62.88 E-value=9.7 Score=32.65 Aligned_cols=74 Identities=16% Similarity=0.066 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhCCCcEEEccCCccccccCceeeCchHHHHHHHHh---C--C--CeEEecCCCHHHHHHHHHhcCCc-eE
Q 025564 173 DLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKL---G--G--EVRWMGKPDKVVQLLCSLSSSVI-IL 244 (251)
Q Consensus 173 ~l~~a~~~~~~~g~~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~---g--~--~~~~~GKP~~~~~~~a~~~l~~~-~~ 244 (251)
+|+..+-.+. +..+.+.||.+...... .+-.-.+..++|.. + + +-.++=||++.+|+.|++..|+. |=
T Consensus 104 ~LRnlLL~l~-~r~k~~FTNa~k~HA~r---~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi~~p~ 179 (244)
T KOG3109|consen 104 VLRNLLLSLK-KRRKWIFTNAYKVHAIR---ILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGIDSPR 179 (244)
T ss_pred HHHHHHHhCc-cccEEEecCCcHHHHHH---HHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHhCCCCcC
Confidence 4455554332 22388889999876542 23333455666642 1 1 34688899999999999999988 55
Q ss_pred EEEeec
Q 025564 245 FLIFLD 250 (251)
Q Consensus 245 ~~~~~~ 250 (251)
=-+|+|
T Consensus 180 ~t~FfD 185 (244)
T KOG3109|consen 180 NTYFFD 185 (244)
T ss_pred ceEEEc
Confidence 455554
No 292
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=62.88 E-value=13 Score=26.78 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=46.1
Q ss_pred CChHHHhcccC---ccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 19 NGLRHIAETRR---FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 19 ~~~~~~~~~~~---~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
+.+.+..+ . .+.+++|+-++-+-......-..++.+.++++|+++.+..=+ ..+.+.+...|+..
T Consensus 29 ~~~~~~~~--~~~~~~~lilD~~~v~~iDss~~~~L~~~~~~~~~~~~~~~l~~~~----~~~~~~l~~~g~~~ 96 (107)
T cd07042 29 DRLLRLVD--EDPPLKVVILDLSAVNFIDSTAAEALEELVKDLRKRGVELYLAGLN----PQVRELLERAGLLD 96 (107)
T ss_pred HHHHHHhc--cCCCceEEEEECCCCchhhHHHHHHHHHHHHHHHHCCCEEEEecCC----HHHHHHHHHcCcHH
Confidence 34445555 4 378899999987777666666777888888999888776422 23667778888764
No 293
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=62.76 E-value=10 Score=33.20 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=40.4
Q ss_pred HHHhcccCccEEEEeccccccCCCcc---CccHHHHHHHHHHCCCeEEEEeCCCCCc
Q 025564 22 RHIAETRRFKAWLLDQFGVLHDGKKP---YPGAISTLEMLATTGAKMVVISNSSRRA 75 (251)
Q Consensus 22 ~~~~~~~~~~~~l~D~DGvL~~g~~~---~pGa~e~L~~L~~~G~~v~ivTN~s~~~ 75 (251)
.+.+. .....-..++||-+.|++| .+.+.++++.+++.|.++++.||..-..
T Consensus 71 ~e~l~--~~~~~~~~~~gvt~SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~ 125 (260)
T COG1180 71 PEVLV--DKAFYSESGGGVTFSGGEPTLQAEFALDLLRAAKERGLHVALDTNGFLPP 125 (260)
T ss_pred HHHHH--HHhhhcCCCCEEEEECCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCCH
Confidence 34554 3333334899999999988 4788999999999999999999987543
No 294
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=62.67 E-value=13 Score=32.54 Aligned_cols=70 Identities=17% Similarity=0.121 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCC-------eEEecCCCHHHHHHHHHhcCC
Q 025564 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGE-------VRWMGKPDKVVQLLCSLSSSV 241 (251)
Q Consensus 171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~-------~~~~GKP~~~~~~~a~~~l~~ 241 (251)
+.....+++.+.++|.++ ++||........---.++... ..+... +.. ...-+||+|.+++.++++++.
T Consensus 189 ~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~--~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~ 266 (300)
T PHA02530 189 NPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTD--IWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIA 266 (300)
T ss_pred ChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcC--CchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhc
Confidence 566677787777788876 677766654321000111110 012221 222 123479999999999999877
Q ss_pred c
Q 025564 242 I 242 (251)
Q Consensus 242 ~ 242 (251)
+
T Consensus 267 ~ 267 (300)
T PHA02530 267 P 267 (300)
T ss_pred c
Confidence 3
No 295
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=62.55 E-value=34 Score=29.85 Aligned_cols=27 Identities=4% Similarity=-0.055 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHHHhCCCc--EEEccCCc
Q 025564 169 MSLQDLEKILEICASKKIP--MVVANPDY 195 (251)
Q Consensus 169 ~~~~~l~~a~~~~~~~g~~--li~~n~D~ 195 (251)
++++.-.++++.+++++.. -|.|+.|.
T Consensus 162 ~~~~~g~~~~~~ll~~~p~idai~~~nd~ 190 (279)
T PF00532_consen 162 FDYESGYEAARELLESHPDIDAIFCANDM 190 (279)
T ss_dssp SSHHHHHHHHHHHHHTSTT-SEEEESSHH
T ss_pred CCHHHHHHHHHHHHhhCCCCEEEEEeCHH
Confidence 4566666666666666533 44444444
No 296
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=62.03 E-value=4.8 Score=33.57 Aligned_cols=23 Identities=17% Similarity=0.080 Sum_probs=19.6
Q ss_pred EEecCCCHHHHHHHHHhcCCceE
Q 025564 222 RWMGKPDKVVQLLCSLSSSVIIL 244 (251)
Q Consensus 222 ~~~GKP~~~~~~~a~~~l~~~~~ 244 (251)
.-.+||+|.+|+.+++++++++-
T Consensus 138 ~~~~KP~p~~~~~a~~~~~~~p~ 160 (221)
T PRK10563 138 IQRWKPDPALMFHAAEAMNVNVE 160 (221)
T ss_pred cCCCCCChHHHHHHHHHcCCCHH
Confidence 34579999999999999998773
No 297
>PRK11660 putative transporter; Provisional
Probab=61.93 E-value=20 Score=34.89 Aligned_cols=71 Identities=10% Similarity=-0.019 Sum_probs=50.8
Q ss_pred CccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCcc-ccceeechhhHHH
Q 025564 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSL-FAGAITSGELTHQ 104 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~-~~~Iits~~~~~~ 104 (251)
+.+.+++|+.+|-.-+..-..-..++.+++++ |.++.++.=+ .++.+.|++.|+.... ..+++.+.+.+.+
T Consensus 490 ~~~~VVlD~~~V~~iDssg~~~L~~l~~~l~~-g~~l~l~~l~----~~v~~~l~~~gl~~~~~~~~if~~~~~Al~ 561 (568)
T PRK11660 490 GKRIVVLQWDAVPVLDAGGLDAFQRFVKRLPE-GCELRICNLQ----FQPLRTLARAGIQPIPGRLAFYPTLREALA 561 (568)
T ss_pred CCCEEEEEcCCCCcccHHHHHHHHHHHHHHHC-CCEEEEecCC----hHHHHHHHHCCChhhcCcccccCCHHHHHH
Confidence 67899999999988888888888899999999 9987776522 2467888888886421 1344444443333
No 298
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=60.83 E-value=7.6 Score=36.67 Aligned_cols=71 Identities=8% Similarity=-0.069 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceEEEE
Q 025564 173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIILFLI 247 (251)
Q Consensus 173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~ 247 (251)
.....++++.++|.++ |+||........ .+..-.+...+... +.+.. -+||.|.+|..++++++.+..++|
T Consensus 334 G~~e~L~~Lk~~g~~l~IvS~~~~~~~~~---~l~~~~l~~~f~~i~~~d~v-~~~~kP~~~~~al~~l~~~~~v~V 406 (459)
T PRK06698 334 NVKEIFTYIKENNCSIYIASNGLTEYLRA---IVSYYDLDQWVTETFSIEQI-NSLNKSDLVKSILNKYDIKEAAVV 406 (459)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCchHHHHH---HHHHCCcHhhcceeEecCCC-CCCCCcHHHHHHHHhcCcceEEEE
Confidence 4466777776788876 667755443221 11111122333331 22222 247778899999999988777665
No 299
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=60.57 E-value=19 Score=34.88 Aligned_cols=76 Identities=11% Similarity=0.133 Sum_probs=45.4
Q ss_pred cCCHHHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCch----HHHHHHHHhCCC--------eEEecCCCHHHHHH
Q 025564 168 PMSLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPG----TLASKFEKLGGE--------VRWMGKPDKVVQLL 234 (251)
Q Consensus 168 ~~~~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G----~i~~~~~~~g~~--------~~~~GKP~~~~~~~ 234 (251)
.+-|.....+++.+.++|.++ |+||...... |. ...- -+.+.++..|.. ....-||+|.|++.
T Consensus 196 ~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~---G~-~~~~~~~~ki~~iL~~lgipfdviia~~~~~~RKP~pGm~~~ 271 (526)
T TIGR01663 196 QIIFPEIPEKLKELEADGFKICIFTNQGGIAR---GK-INADDFKAKIEAIVAKLGVPFQVFIAIGAGFYRKPLTGMWDH 271 (526)
T ss_pred eecccCHHHHHHHHHHCCCEEEEEECCccccc---Cc-ccHHHHHHHHHHHHHHcCCceEEEEeCCCCCCCCCCHHHHHH
Confidence 334566777888877889885 7788655321 10 1111 133344444432 12356999999999
Q ss_pred HHHhcC----C--ceEEEE
Q 025564 235 CSLSSS----V--IILFLI 247 (251)
Q Consensus 235 a~~~l~----~--~~~~~~ 247 (251)
++++++ + ..++||
T Consensus 272 a~~~~~~~~~Id~~~S~~V 290 (526)
T TIGR01663 272 LKEEANDGTEIQEDDCFFV 290 (526)
T ss_pred HHHhcCcccCCCHHHeEEe
Confidence 999884 3 456665
No 300
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=60.37 E-value=10 Score=36.11 Aligned_cols=45 Identities=13% Similarity=0.241 Sum_probs=36.1
Q ss_pred CccEEEE----eccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564 29 RFKAWLL----DQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR 73 (251)
Q Consensus 29 ~~~~~l~----D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~ 73 (251)
.+..+.+ ..=|.+.-.+.+.|++.+++++|++.|+++.++|....
T Consensus 326 g~~~~~~a~~~~~~g~i~l~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~ 374 (499)
T TIGR01494 326 GLRVLAVASKETLLGLLGLEDPLRDDAKETISELREAGIRVIMLTGDNV 374 (499)
T ss_pred CCEEEEEEECCeEEEEEEecCCCchhHHHHHHHHHHCCCeEEEEcCCCH
Confidence 3444444 34466777889999999999999999999999998764
No 301
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=59.67 E-value=15 Score=38.65 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=38.5
Q ss_pred ccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 39 GvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
|.+.-.+++.|++.++++.|+++|+++.++|+....+ ....-+++|+-..
T Consensus 649 Gli~~~d~lr~~~~~~I~~l~~agi~v~miTGD~~~T--A~~iA~~~gii~~ 698 (1054)
T TIGR01657 649 GFIVFENPLKPDTKEVIKELKRASIRTVMITGDNPLT--AVHVARECGIVNP 698 (1054)
T ss_pred EEEEEecCCCccHHHHHHHHHHCCCeEEEECCCCHHH--HHHHHHHcCCCCC
Confidence 6666677899999999999999999999999876422 2234456788543
No 302
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=58.93 E-value=23 Score=36.79 Aligned_cols=59 Identities=20% Similarity=0.283 Sum_probs=43.0
Q ss_pred ccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccc--eeechh
Q 025564 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAG--AITSGE 100 (251)
Q Consensus 39 GvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~--Iits~~ 100 (251)
|-+--.++|-|+++++++.|+++|+++..+|.-...+ ....-+++|+.... .. ++++.+
T Consensus 540 Gl~g~~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~T--A~aIa~~~Gi~~~~-~~~~vi~G~e 600 (917)
T COG0474 540 GLTGIEDPPREDVKEAIEELREAGIKVWMITGDHVET--AIAIAKECGIEAEA-ESALVIDGAE 600 (917)
T ss_pred hhhhccCCCCccHHHHHHHHHHCCCcEEEECCCCHHH--HHHHHHHcCCCCCC-CceeEeehHH
Confidence 3444567899999999999999999999999866422 23444568887652 32 666654
No 303
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=58.59 E-value=11 Score=32.45 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=31.6
Q ss_pred ccccccCCCccC--ccHHHHHHHHHHCCCeEEEEeCCCCC
Q 025564 37 QFGVLHDGKKPY--PGAISTLEMLATTGAKMVVISNSSRR 74 (251)
Q Consensus 37 ~DGvL~~g~~~~--pGa~e~L~~L~~~G~~v~ivTN~s~~ 74 (251)
...+...|.+|+ ++..+++++|++.|+++.+-||.+..
T Consensus 73 ~~~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNGtl~ 112 (238)
T TIGR03365 73 PLHVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSVW 112 (238)
T ss_pred CCeEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCCCCc
Confidence 455667777764 78999999999999999999999853
No 304
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=57.26 E-value=17 Score=31.92 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=35.2
Q ss_pred eccccccCCCccC--ccH-HHHHHHHHHCCCeEEEEeCCCCCchhHHHHhH
Q 025564 36 DQFGVLHDGKKPY--PGA-ISTLEMLATTGAKMVVISNSSRRASTTIDKLK 83 (251)
Q Consensus 36 D~DGvL~~g~~~~--pGa-~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~ 83 (251)
...||.+.|.+|+ +.. .++++++++.|+++.+.||.....+.+.+.+.
T Consensus 125 ~~~~V~~sGGEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~~~~~~~ll~ 175 (295)
T TIGR02494 125 SGGGVTLSGGEPLLQPEFALALLQACHERGIHTAVETSGFTPWETIEKVLP 175 (295)
T ss_pred CCCcEEeeCcchhchHHHHHHHHHHHHHcCCcEeeeCCCCCCHHHHHHHHh
Confidence 3468888888875 554 68999999999999999998754333444333
No 305
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=57.22 E-value=12 Score=34.58 Aligned_cols=49 Identities=14% Similarity=0.059 Sum_probs=42.9
Q ss_pred ChHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeC
Q 025564 20 GLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN 70 (251)
Q Consensus 20 ~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN 70 (251)
-..+.++ ++|+++||+.-|=.+--+.+--...+++++.+.|++++++=-
T Consensus 71 Pt~~mL~--~vDvlvfDiQDvG~R~YTYi~Tl~~~MeAaa~~g~~vvVLDR 119 (365)
T PF07075_consen 71 PTPEMLK--GVDVLVFDIQDVGVRFYTYISTLYYVMEAAAENGKPVVVLDR 119 (365)
T ss_pred CCHHHHh--CCCEEEEeCccCCchHHHHHHHHHHHHHHHHHhCCeEEEEeC
Confidence 3468888 999999999998777777788888999999999999999974
No 306
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=55.33 E-value=31 Score=36.27 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=41.3
Q ss_pred EeccccccCCCccCccHHHHHHHHHH--CC--CeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHHH
Q 025564 35 LDQFGVLHDGKKPYPGAISTLEMLAT--TG--AKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQY 105 (251)
Q Consensus 35 ~D~DGvL~~g~~~~pGa~e~L~~L~~--~G--~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~ 105 (251)
.|+|.| ....+..+++++.+++ .. +-++++| +|+..++.+.|++.|++...++.+|++.-....|
T Consensus 777 ~D~d~~----~~~~~~l~~~~~~~~~~~~~~~igfv~aT--GR~l~~~~~~l~~~~lp~~~PD~lI~~vGTeIyy 845 (1050)
T TIGR02468 777 VDCYDD----KDLLQIIKNIFEAVRKERMEGSSGFILST--SMTISEIQSFLKSGGLNPTDFDALICNSGSELYY 845 (1050)
T ss_pred eccCCC----CChHHHHHHHHHHHhccccCCceEEEEEc--CCCHHHHHHHHHhCCCCCCCCCEEEeCCCcceec
Confidence 799998 2244556777777862 22 4455666 4555667788999999842247777655433333
No 307
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=54.63 E-value=13 Score=31.61 Aligned_cols=26 Identities=8% Similarity=0.019 Sum_probs=22.8
Q ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564 47 PYPGAISTLEMLATTGAKMVVISNSSR 73 (251)
Q Consensus 47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~ 73 (251)
-+++..++++.|.++|.++ ++||..+
T Consensus 139 ~~~~~~~~l~~l~~~g~~~-i~tN~d~ 164 (242)
T TIGR01459 139 DLDEFDELFAPIVARKIPN-ICANPDR 164 (242)
T ss_pred CHHHHHHHHHHHHhCCCcE-EEECCCE
Confidence 4799999999999999997 8899874
No 308
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=54.60 E-value=20 Score=34.82 Aligned_cols=57 Identities=16% Similarity=0.143 Sum_probs=46.7
Q ss_pred ccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 30 ~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
.+.+++|+.+|-+-+..-..-..++.++++++|+++.++--+ +++.+.|++.|+...
T Consensus 494 ~~~vIlD~~~V~~iDsSg~~~L~~l~~~l~~~g~~l~l~~~~----~~v~~~l~~~gl~~~ 550 (563)
T TIGR00815 494 LQVVILDMSAVPHLDTSGIHALEELRKELKARGIQLLLANPN----KAVRSTLKRGGLVEL 550 (563)
T ss_pred ceEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEecCC----hHHHHHHHHCCchhh
Confidence 379999999999888888888889999999999998887633 346688888888654
No 309
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=54.17 E-value=13 Score=34.13 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=21.9
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564 49 PGAISTLEMLATTGAKMVVISNSSR 73 (251)
Q Consensus 49 pGa~e~L~~L~~~G~~v~ivTN~s~ 73 (251)
|....+|++|+++|+++.++||++-
T Consensus 243 ~ql~~fl~kL~~~GKklFLiTNSPy 267 (510)
T KOG2470|consen 243 PQLLAFLRKLKDHGKKLFLITNSPY 267 (510)
T ss_pred HHHHHHHHHHHHhcCcEEEEeCCch
Confidence 4566789999999999999999974
No 310
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=51.34 E-value=65 Score=29.51 Aligned_cols=84 Identities=19% Similarity=0.213 Sum_probs=49.4
Q ss_pred CccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCCCcEEEc-cCCccccccCceeeCchHHHHHHHHhCCCeEEec
Q 025564 147 EADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVA-NPDYVTVEARALRVMPGTLASKFEKLGGEVRWMG 225 (251)
Q Consensus 147 ~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g~~li~~-n~D~~~~~~~~~~~~~G~i~~~~~~~g~~~~~~G 225 (251)
.+|+|.++.. .++.- ++-.+|+.++++.+++++...|.+++++ |.-.. ..+ .....-....+..+|..++.++
T Consensus 26 GADaVY~G~~-~~~~R-~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~-~~~---~~~~~~~l~~l~e~GvDaviv~ 99 (347)
T COG0826 26 GADAVYIGEK-EFGLR-RRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLH-NDE---LETLERYLDRLVELGVDAVIVA 99 (347)
T ss_pred CCCEEEeCCc-ccccc-cccccCCHHHHHHHHHHHHHcCCeEEEEeccccc-cch---hhHHHHHHHHHHHcCCCEEEEc
Confidence 3788887544 33311 1225699999999999988899976555 53222 211 1122233334444688999998
Q ss_pred CCCHHHHHHHHHh
Q 025564 226 KPDKVVQLLCSLS 238 (251)
Q Consensus 226 KP~~~~~~~a~~~ 238 (251)
-|. +...+.++
T Consensus 100 Dpg--~i~l~~e~ 110 (347)
T COG0826 100 DPG--LIMLARER 110 (347)
T ss_pred CHH--HHHHHHHh
Confidence 664 44444433
No 311
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=50.77 E-value=42 Score=30.36 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=39.5
Q ss_pred ccEEEEeccc-----cccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCC-c--hhHHHHhHhCCCC
Q 025564 30 FKAWLLDQFG-----VLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRR-A--STTIDKLKSLGFD 88 (251)
Q Consensus 30 ~~~~l~D~DG-----vL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~-~--~~~~~~L~~~Gl~ 88 (251)
.+++.+|+|= ...-..+-+|...++++.|+++|+++++..+..-. . ...-+.+.+.|+-
T Consensus 40 ~d~i~lD~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~ 106 (339)
T cd06603 40 YDVIWLDIEHTDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYL 106 (339)
T ss_pred ceEEEEChHHhCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeE
Confidence 5788899862 22123457899999999999999999887774421 1 1233445666653
No 312
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=49.56 E-value=19 Score=30.74 Aligned_cols=37 Identities=14% Similarity=0.067 Sum_probs=29.9
Q ss_pred ccccccCCCccC--cc-HHHHHHHHHHCCCeEEEEeCCCC
Q 025564 37 QFGVLHDGKKPY--PG-AISTLEMLATTGAKMVVISNSSR 73 (251)
Q Consensus 37 ~DGvL~~g~~~~--pG-a~e~L~~L~~~G~~v~ivTN~s~ 73 (251)
.+|+-+.|.+|. +. ..++++.+++.|.++.+.||...
T Consensus 71 ~~~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 71 GGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred CCeEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 457777788774 45 45899999999999999999874
No 313
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=49.24 E-value=56 Score=34.88 Aligned_cols=89 Identities=19% Similarity=0.299 Sum_probs=41.3
Q ss_pred HHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHHHHhccCchhhhhcCCe--EEEeccCCc
Q 025564 52 ISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRS--CIHMTWSDR 129 (251)
Q Consensus 52 ~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~~~~~~~~~~~g~~--~~~~g~~~~ 129 (251)
..+|-+|++.|.+|.|.|-=-|.-.-+.+.|...|++-...+.-+- ++.-..-|.+.+.+ +.. ||++..
T Consensus 689 DKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvr-gelRq~AIDhFnap-----~SddFvFLLST--- 759 (1373)
T KOG0384|consen 689 DKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVR-GELRQQAIDHFNAP-----DSDDFVFLLST--- 759 (1373)
T ss_pred HHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcc-hHHHHHHHHhccCC-----CCCceEEEEec---
Confidence 3566777777777777773222222233444444444111111111 11112222222222 232 444442
Q ss_pred ccccccCCCceecCCCCCccEEEEecC
Q 025564 130 GAISLEGLGLKVVENVEEADFILAHGT 156 (251)
Q Consensus 130 ~~~~l~~~g~~~~~~~~~~~~Vvv~~~ 156 (251)
-..++||.+. .+|.||+.++
T Consensus 760 ---RAGGLGINLa----tADTVIIFDS 779 (1373)
T KOG0384|consen 760 ---RAGGLGINLA----TADTVIIFDS 779 (1373)
T ss_pred ---ccCccccccc----ccceEEEeCC
Confidence 2455788764 5788998665
No 314
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=49.16 E-value=19 Score=26.29 Aligned_cols=31 Identities=23% Similarity=0.102 Sum_probs=24.0
Q ss_pred CCCeEEecCCCHHHHHHHHHhcCCceEEEEe
Q 025564 218 GGEVRWMGKPDKVVQLLCSLSSSVIILFLIF 248 (251)
Q Consensus 218 g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~ 248 (251)
++.....|||.+..++.+.++++.++--+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (139)
T cd01427 88 GGGPFDIGKPNPDKLLAALKLLGVDPEEVLM 118 (139)
T ss_pred cccccccCCCCHHHHHHHHHHcCCChhhEEE
Confidence 4566788999999999999999875433333
No 315
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=48.09 E-value=16 Score=29.35 Aligned_cols=82 Identities=12% Similarity=0.076 Sum_probs=44.4
Q ss_pred ccCCHHHHHHHHHHHHhCCCcE-EEccCCccccc--cCceeeCchHHHHHHHHhCCCeE--------EecCCCHHHHHHH
Q 025564 167 RPMSLQDLEKILEICASKKIPM-VVANPDYVTVE--ARALRVMPGTLASKFEKLGGEVR--------WMGKPDKVVQLLC 235 (251)
Q Consensus 167 ~~~~~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~--~~~~~~~~G~i~~~~~~~g~~~~--------~~GKP~~~~~~~a 235 (251)
..+-+...-.+++.+.++|..+ |+||.+-+-.. .....--..-+...++..+.... .+=||.+-|++.+
T Consensus 27 ~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip~~~~~a~~~d~~RKP~~GM~~~~ 106 (159)
T PF08645_consen 27 WKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIPIQVYAAPHKDPCRKPNPGMWEFA 106 (159)
T ss_dssp GEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS-EEEEECGCSSTTSTTSSHHHHHH
T ss_pred hhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCceEEEecCCCCCCCCCchhHHHHH
Confidence 3444444566777777788775 66786665431 11000111223334444443221 4669999999999
Q ss_pred HHhcCC------ceEEEEe
Q 025564 236 SLSSSV------IILFLIF 248 (251)
Q Consensus 236 ~~~l~~------~~~~~~~ 248 (251)
++.++. ..+|||-
T Consensus 107 ~~~~~~~~~id~~~Sf~VG 125 (159)
T PF08645_consen 107 LKDYNDGVEIDLANSFYVG 125 (159)
T ss_dssp CCCTSTT--S-CCC-EEEE
T ss_pred HHhccccccccccceEEEe
Confidence 988854 6677763
No 316
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=48.04 E-value=33 Score=29.80 Aligned_cols=42 Identities=24% Similarity=0.350 Sum_probs=32.3
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCCCc
Q 025564 49 PGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPS 90 (251)
Q Consensus 49 pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~~~ 90 (251)
+...++++.|+++|+++.-+|..+. ......+.|+++|++-.
T Consensus 84 ~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs 126 (252)
T PF11019_consen 84 SDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFS 126 (252)
T ss_pred hhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCcc
Confidence 3455688999999999999998764 33345678999999854
No 317
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=47.43 E-value=51 Score=26.44 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=35.9
Q ss_pred hHHHhcccCccEEEEecccc--ccCCCccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564 21 LRHIAETRRFKAWLLDQFGV--LHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 21 ~~~~~~~~~~~~~l~D~DGv--L~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s 72 (251)
++.... .-.+.+-|++-- +.+.-.+.|+|+++++.|.+. +.++++|.+.
T Consensus 43 ik~yv~--~~~g~i~~il~ep~fFRnL~V~p~aq~v~keLt~~-y~vYivtaam 93 (180)
T COG4502 43 IKNYVK--PECGKIYDILKEPHFFRNLGVQPFAQTVLKELTSI-YNVYIVTAAM 93 (180)
T ss_pred hhhccC--ccCCeeeeeccCcchhhhcCccccHHHHHHHHHhh-heEEEEEecc
Confidence 344444 445566666554 667778999999999999874 8899999764
No 318
>PRK10658 putative alpha-glucosidase; Provisional
Probab=47.39 E-value=50 Score=33.05 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=39.8
Q ss_pred ccEEEEecc-------ccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCC
Q 025564 30 FKAWLLDQF-------GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFD 88 (251)
Q Consensus 30 ~~~~l~D~D-------GvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~ 88 (251)
.++|.+|++ ++..-..+-+|.-++++++|+++|+++++..|-.- .....-+...+.|+-
T Consensus 299 ~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy~ 365 (665)
T PRK10658 299 LHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGYL 365 (665)
T ss_pred ceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCeE
Confidence 578999985 23322346789999999999999999998887542 111233344555553
No 319
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=47.14 E-value=29 Score=26.06 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=23.6
Q ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCCC
Q 025564 47 PYPGAISTLEMLATTGAKMVVISNSSRR 74 (251)
Q Consensus 47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~ 74 (251)
--+...++++.++++|.+++.+|++..+
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4577888999999999999999997643
No 320
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=46.78 E-value=22 Score=37.40 Aligned_cols=48 Identities=23% Similarity=0.222 Sum_probs=36.1
Q ss_pred ccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 39 GvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
|.+--.+++-||+.++++.|+++|+++.++|+....+ ....-++.|+-
T Consensus 624 G~~gieD~lq~~v~etI~~L~~AGIkv~mlTGD~~~T--A~~IA~~~~ii 671 (1057)
T TIGR01652 624 GATAIEDKLQEGVPETIELLRQAGIKIWVLTGDKVET--AINIGYSCRLL 671 (1057)
T ss_pred EEEEEhhhhhhccHHHHHHHHHCCCeEEEEcCCcHHH--HHHHHHHhCCC
Confidence 6666778899999999999999999999999866322 22333345554
No 321
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=46.61 E-value=28 Score=25.99 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=23.2
Q ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCCC
Q 025564 47 PYPGAISTLEMLATTGAKMVVISNSSRR 74 (251)
Q Consensus 47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~ 74 (251)
--+...++++.++++|.+++.+||+..+
T Consensus 58 ~t~e~~~~~~~a~~~g~~vi~iT~~~~s 85 (126)
T cd05008 58 ETADTLAALRLAKEKGAKTVAITNVVGS 85 (126)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 3456888999999999999999998654
No 322
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=45.20 E-value=66 Score=34.57 Aligned_cols=90 Identities=19% Similarity=0.250 Sum_probs=51.7
Q ss_pred HHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHHHHhccCchhhhhcCCeEEEeccCCccc
Q 025564 52 ISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGA 131 (251)
Q Consensus 52 ~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~ 131 (251)
.-+|+.|+..|.++.|.|--++.-..+...|..+|+.=...+. -|+-+--...+.+.+.+ ++++++..+.+
T Consensus 1266 AiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg-~t~vEqRQaLmerFNaD------~RIfcfILSTr-- 1336 (1958)
T KOG0391|consen 1266 AILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDG-NTSVEQRQALMERFNAD------RRIFCFILSTR-- 1336 (1958)
T ss_pred HHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecC-CccHHHHHHHHHHhcCC------CceEEEEEecc--
Confidence 4478999999999999996554444455667777765211121 12223233344444432 56665443322
Q ss_pred ccccCCCceecCCCCCccEEEEecC
Q 025564 132 ISLEGLGLKVVENVEEADFILAHGT 156 (251)
Q Consensus 132 ~~l~~~g~~~~~~~~~~~~Vvv~~~ 156 (251)
=...|++++ .+|.||+-++
T Consensus 1337 --SggvGiNLt----gADTVvFYDs 1355 (1958)
T KOG0391|consen 1337 --SGGVGINLT----GADTVVFYDS 1355 (1958)
T ss_pred --CCccccccc----cCceEEEecC
Confidence 234677664 5788998654
No 323
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=44.92 E-value=87 Score=24.63 Aligned_cols=55 Identities=5% Similarity=-0.054 Sum_probs=36.8
Q ss_pred HHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHhCCC-eEEecCCCHHHHHHHHHhcCCce
Q 025564 177 ILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGE-VRWMGKPDKVVQLLCSLSSSVII 243 (251)
Q Consensus 177 a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~g~~-~~~~GKP~~~~~~~a~~~l~~~~ 243 (251)
+++.+.++|.++ |+||.... .....++..|-. .....||.|.+++.+++++++.+
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~------------~~~~~l~~~gi~~~~~~~~~k~~~~~~~~~~~~~~~ 92 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAK------------LVEDRCKTLGITHLYQGQSNKLIAFSDILEKLALAP 92 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCH------------HHHHHHHHcCCCEEEecccchHHHHHHHHHHcCCCH
Confidence 777777889886 67774432 122344544443 23445899999999999998663
No 324
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=44.48 E-value=37 Score=29.33 Aligned_cols=40 Identities=8% Similarity=0.069 Sum_probs=29.8
Q ss_pred ccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR 73 (251)
Q Consensus 30 ~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~ 73 (251)
.+++++..|. ..-.+++..++++.|++.+++++++||.++
T Consensus 108 ~~~Vv~g~~~----~~~~y~~l~~a~~~L~~~~~~~~iatn~~~ 147 (257)
T TIGR01458 108 PNCVVMGLAP----EHFSYQILNQAFRLLLDGAKPLLIAIGKGR 147 (257)
T ss_pred CCEEEEeccc----CccCHHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 3455555432 123478999999999999999999999875
No 325
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=44.35 E-value=29 Score=32.65 Aligned_cols=62 Identities=11% Similarity=0.074 Sum_probs=40.4
Q ss_pred cccccccCCCchhccCChHHHhcccCccEEEEeccccccCCC---ccCc-cHHHHHHHHHHCCCeEEEE-eCCC
Q 025564 4 KCSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGK---KPYP-GAISTLEMLATTGAKMVVI-SNSS 72 (251)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~DGvL~~g~---~~~p-Ga~e~L~~L~~~G~~v~iv-TN~s 72 (251)
.|+++.|.+..+.-.+.+.++++ +| .+|||++... +++. +..++=+.+++.|+|+..+ |.-+
T Consensus 336 ~~~~~~~~~~~~~R~~~l~~li~--e~-----~vDGVI~~~~~~C~~~s~e~~~ik~~l~~~GIP~L~ietD~~ 402 (430)
T TIGR03191 336 SKPLWQHFFDPRIKSEMMLNIAR--DW-----NVDGCMLHLNRGCEGLSIGIMENRLAIAKAGIPIMTFEGNMG 402 (430)
T ss_pred ccchhccCCChhHHHHHHHHHHH--HH-----CCCEEEEcCCCCCccchHhHHHHHHHHHHcCCCEEEEECCCC
Confidence 35556566665666777778888 44 5688887544 5664 4444335678899998888 5533
No 326
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=44.33 E-value=62 Score=25.31 Aligned_cols=41 Identities=24% Similarity=0.385 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHHC--CCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 49 PGAISTLEMLATT--GAKMVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 49 pGa~e~L~~L~~~--G~~v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
+...++++.+++. +.++.+.||......+..+.|.+.|+..
T Consensus 59 ~~~~~~i~~~~~~~~~~~~~i~T~~~~~~~~~~~~l~~~g~~~ 101 (204)
T cd01335 59 PELAELLRRLKKELPGFEISIETNGTLLTEELLKELKELGLDG 101 (204)
T ss_pred HhHHHHHHHHHhhCCCceEEEEcCcccCCHHHHHHHHhCCCce
Confidence 4788999999998 8999999998753455667787776654
No 327
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=44.30 E-value=1e+02 Score=26.27 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=60.9
Q ss_pred chhccCChHHHhcccCccEEEEeccccccCCCccCccHH-HHHHHHHHCCCeEEEEeCCC-C--CchhHHHHhHhCCCCC
Q 025564 14 LFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAI-STLEMLATTGAKMVVISNSS-R--RASTTIDKLKSLGFDP 89 (251)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~-e~L~~L~~~G~~v~ivTN~s-~--~~~~~~~~L~~~Gl~~ 89 (251)
+|..++...+++. + +++.|=+|.-+ +.|... ++.+.+++.|.+.+|+..-+ + .+.++.++++++|+..
T Consensus 35 l~efId~pee~Lp--~----i~~~Dl~I~y~--lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~ 106 (217)
T PF02593_consen 35 LPEFIDDPEEYLP--K----IPEADLLIAYG--LHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEV 106 (217)
T ss_pred ccccccChHHHcc--C----CCCCCEEEEec--cCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCcee
Confidence 6666777788888 4 77777665533 445554 67777888999999888754 2 2357889999999887
Q ss_pred ccccceeechhh-----HHHHHhccC
Q 025564 90 SLFAGAITSGEL-----THQYLLRRD 110 (251)
Q Consensus 90 ~~~~~Iits~~~-----~~~~L~~~~ 110 (251)
. +...+.+-+- ..+|++..+
T Consensus 107 ~-~P~~~CsL~~~~~p~i~~F~~~fG 131 (217)
T PF02593_consen 107 E-FPKPFCSLEENGNPQIDEFAEYFG 131 (217)
T ss_pred e-cCccccccCCCCChhHHHHHHHhC
Confidence 6 5666666543 556665543
No 328
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=44.07 E-value=49 Score=30.00 Aligned_cols=44 Identities=11% Similarity=0.127 Sum_probs=34.4
Q ss_pred CccEEEEecc-----ccccCCCccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564 29 RFKAWLLDQF-----GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 29 ~~~~~l~D~D-----GvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s 72 (251)
.++++.+|+| +...-..+-+|...++++.|+++|.++++.+.-.
T Consensus 39 P~D~i~lDidy~~~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~ 87 (332)
T cd06601 39 PLDGLHVDVDFQDNYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPV 87 (332)
T ss_pred CCceEEEcCchhcCCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCc
Confidence 3689999996 3333344678999999999999999998877643
No 329
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=44.01 E-value=26 Score=28.39 Aligned_cols=42 Identities=29% Similarity=0.288 Sum_probs=32.9
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCC-CC--chhHHHHhHhCCCCCc
Q 025564 48 YPGAISTLEMLATTGAKMVVISNSS-RR--ASTTIDKLKSLGFDPS 90 (251)
Q Consensus 48 ~pGa~e~L~~L~~~G~~v~ivTN~s-~~--~~~~~~~L~~~Gl~~~ 90 (251)
..||...|+.|+ .|+|.++++|-+ .. ..+++++|.+.|.-.+
T Consensus 87 HAGaGS~letL~-l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~ 131 (170)
T KOG3349|consen 87 HAGAGSCLETLR-LGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYY 131 (170)
T ss_pred cCCcchHHHHHH-cCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEE
Confidence 367888999987 589999999987 33 3578889988887643
No 330
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=43.36 E-value=41 Score=29.62 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=35.6
Q ss_pred cccccCCCcc--CccHHHHHHHHHHCCC-eEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 38 FGVLHDGKKP--YPGAISTLEMLATTGA-KMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 38 DGvL~~g~~~--~pGa~e~L~~L~~~G~-~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
..+.+.|.+| .+...++++.+++.|. .+.+.||.... .+....|.+.|+.
T Consensus 58 ~~I~~tGGEPll~~~l~~iv~~l~~~g~~~v~i~TNG~ll-~~~~~~l~~~g~~ 110 (302)
T TIGR02668 58 RKVKITGGEPLLRKDLIEIIRRIKDYGIKDVSMTTNGILL-EKLAKKLKEAGLD 110 (302)
T ss_pred CEEEEECcccccccCHHHHHHHHHhCCCceEEEEcCchHH-HHHHHHHHHCCCC
Confidence 3344455554 4888999999999998 88999987643 3455677777764
No 331
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=43.32 E-value=26 Score=29.22 Aligned_cols=47 Identities=21% Similarity=0.276 Sum_probs=25.0
Q ss_pred EeccccccCCC------ccCccHHHHHHHHHH-CCCeEEEEeCCCC--CchhHHHH
Q 025564 35 LDQFGVLHDGK------KPYPGAISTLEMLAT-TGAKMVVISNSSR--RASTTIDK 81 (251)
Q Consensus 35 ~D~DGvL~~g~------~~~pGa~e~L~~L~~-~G~~v~ivTN~s~--~~~~~~~~ 81 (251)
+|.-|++|... .+.|=..+..+.|++ .|...+++||+.. ..++++++
T Consensus 21 ~dfng~~~~~p~GnilIDP~~ls~~~~~~l~a~ggv~~IvLTn~dHvR~A~~ya~~ 76 (199)
T PF14597_consen 21 LDFNGHAWRRPEGNILIDPPPLSAHDWKHLDALGGVAWIVLTNRDHVRAAEDYAEQ 76 (199)
T ss_dssp EEEEEEEE--TT--EEES-----HHHHHHHHHTT--SEEE-SSGGG-TTHHHHHHH
T ss_pred cCceeEEEEcCCCCEEecCccccHHHHHHHHhcCCceEEEEeCChhHhHHHHHHHH
Confidence 45556665422 456778899999988 5888999999863 33445443
No 332
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=42.54 E-value=95 Score=27.77 Aligned_cols=60 Identities=12% Similarity=0.121 Sum_probs=39.1
Q ss_pred CccEEEEeccccc--------cC-CCccCccHHHHHHHHHHCCCeEEEEeCCCCC-chhHHHHhHhCCCC
Q 025564 29 RFKAWLLDQFGVL--------HD-GKKPYPGAISTLEMLATTGAKMVVISNSSRR-ASTTIDKLKSLGFD 88 (251)
Q Consensus 29 ~~~~~l~D~DGvL--------~~-g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~-~~~~~~~L~~~Gl~ 88 (251)
.++++.+|.+=+- +. ..+-+|...++++.|+++|+++++..+..-. ....-+.+.+.|+-
T Consensus 44 P~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~~ 113 (317)
T cd06599 44 PCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGAF 113 (317)
T ss_pred CeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCcE
Confidence 3578888854321 11 2367899999999999999999987765421 11233445555543
No 333
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=42.41 E-value=1.4e+02 Score=31.56 Aligned_cols=106 Identities=13% Similarity=0.078 Sum_probs=57.6
Q ss_pred HHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh---HHHHHhccCchhhhhcCCeEEEeccCC
Q 025564 52 ISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL---THQYLLRRDDAWFAALGRSCIHMTWSD 128 (251)
Q Consensus 52 ~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~---~~~~L~~~~~~~~~~~g~~~~~~g~~~ 128 (251)
..+|..|++.|.+++|.|.-.+....+.+.|...|+... .+.+... -...+.+.+.+. -+..+++++..
T Consensus 477 dkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~----rIdGsts~~eRq~~Id~Fn~~~---s~~~VfLLSTr- 548 (1033)
T PLN03142 477 DKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYC----RIDGNTGGEDRDASIDAFNKPG---SEKFVFLLSTR- 548 (1033)
T ss_pred HHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEE----EECCCCCHHHHHHHHHHhcccc---CCceEEEEecc-
Confidence 456777888999999999754433445566666676532 2333222 112233322210 01235554432
Q ss_pred cccccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCC
Q 025564 129 RGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKK 185 (251)
Q Consensus 129 ~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g 185 (251)
....|+.+ ..++.||+ +|..+|......|+..+-+-|
T Consensus 549 -----AGGlGINL----t~Ad~VIi-----------yD~dWNP~~d~QAidRaHRIG 585 (1033)
T PLN03142 549 -----AGGLGINL----ATADIVIL-----------YDSDWNPQVDLQAQDRAHRIG 585 (1033)
T ss_pred -----ccccCCch----hhCCEEEE-----------eCCCCChHHHHHHHHHhhhcC
Confidence 23467765 34788888 456667666666665544333
No 334
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=42.23 E-value=79 Score=28.33 Aligned_cols=11 Identities=27% Similarity=0.468 Sum_probs=7.4
Q ss_pred CCCeEEecCCC
Q 025564 218 GGEVRWMGKPD 228 (251)
Q Consensus 218 g~~~~~~GKP~ 228 (251)
|.+.+++|||+
T Consensus 113 Gy~vvi~G~~~ 123 (298)
T PRK01045 113 GYEIILIGHKG 123 (298)
T ss_pred CCEEEEEeCCC
Confidence 55667777765
No 335
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=42.20 E-value=45 Score=29.90 Aligned_cols=44 Identities=16% Similarity=0.275 Sum_probs=33.2
Q ss_pred CccEEEEecc-----ccccCCCccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564 29 RFKAWLLDQF-----GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 29 ~~~~~l~D~D-----GvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s 72 (251)
..+.+.+|+| +...-..+.+|..+++++.|+++|+++.+..+..
T Consensus 39 P~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~ 87 (317)
T cd06600 39 PYDVVFLDIHYMDSYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPG 87 (317)
T ss_pred CcceEEEChhhhCCCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecc
Confidence 3578999975 3332234578999999999999999998876543
No 336
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=42.09 E-value=1.9e+02 Score=25.99 Aligned_cols=41 Identities=10% Similarity=0.065 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 50 GAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 50 Ga~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
...+.++.+-+.+.|++|+|++....+++.+..++.+++..
T Consensus 70 ~~~~~~~~~~~~~~P~iIvt~~~~~p~~l~~~a~~~~ip~l 110 (304)
T TIGR00679 70 EQKQIIHNLLTLNPPAIILSKSFTDPTVLLQVNETYQVPIL 110 (304)
T ss_pred HHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEE
Confidence 45567888888899999999987666677777888999875
No 337
>cd00153 RalGDS_RA Ubiquitin domain of RalGDS-like factor (RLF) and related proteins. This CD represents the C-terminal Ras-associating (RA) domain of three closely related guanine-nucleotide exchange factors (GEF's), Ral guanine nucleotide dissociation stimulator (RalGDS), RalGDS-like (RGL), and RalGDS-like factor (RLF). The RalGDS proteins are downstream effectors of the Ras-related protein Ral, providing a mechanism for Ral activation by extracellular signals. The RA domain is structurally similar to ubiquitin and exists in a number of other signalling proteins including AF6, rasfadin, SNX27, CYR1, and STE50.
Probab=41.65 E-value=36 Score=24.60 Aligned_cols=29 Identities=3% Similarity=0.149 Sum_probs=24.9
Q ss_pred CCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 62 GAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 62 G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
-|+-+++||+.+.+..+.+.|.+++++..
T Consensus 17 ~YKSIlltsqDktP~VI~ral~Khnl~~~ 45 (87)
T cd00153 17 LYKSILLTSQDKAPQVIRRAMEKHNLESE 45 (87)
T ss_pred eEEEEEEecCCcCHHHHHHHHHHhCCCcC
Confidence 36889999999887788899999999865
No 338
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=41.08 E-value=37 Score=29.17 Aligned_cols=62 Identities=16% Similarity=0.078 Sum_probs=37.7
Q ss_pred cCChHHHhcccCccEEEEeccccccCCC--ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhH
Q 025564 18 LNGLRHIAETRRFKAWLLDQFGVLHDGK--KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK 83 (251)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~D~DGvL~~g~--~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~ 83 (251)
..+..++++ . ..-.-.||++.... +..+...++++.+++.|.+.+++-|..++.+.+...++
T Consensus 87 ~~~~~~~i~--~--~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~ 150 (244)
T PRK13125 87 VDSLDNFLN--M--ARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSK 150 (244)
T ss_pred hhCHHHHHH--H--HHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH
Confidence 445555555 2 22344666666543 22467778888999999998888887654444444443
No 339
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=41.03 E-value=42 Score=25.27 Aligned_cols=28 Identities=7% Similarity=0.221 Sum_probs=23.9
Q ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCCC
Q 025564 47 PYPGAISTLEMLATTGAKMVVISNSSRR 74 (251)
Q Consensus 47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~ 74 (251)
--+...++++.++++|.+++.+||+..+
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (120)
T cd05710 59 NTKETVAAAKFAKEKGATVIGLTDDEDS 86 (120)
T ss_pred CChHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 4578889999999999999999997754
No 340
>cd01037 Restriction_endonuclease_like Superfamily of nucleases including Short Patch Repair (Vsr) Endonucleases, archaeal Holliday junction resolvases, MutH methy-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI
Probab=40.83 E-value=48 Score=21.63 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=29.7
Q ss_pred cEEEEeccccccCCCccCccHH---HHHHHHHHCCCeEEEEeC
Q 025564 31 KAWLLDQFGVLHDGKKPYPGAI---STLEMLATTGAKMVVISN 70 (251)
Q Consensus 31 ~~~l~D~DGvL~~g~~~~pGa~---e~L~~L~~~G~~v~ivTN 70 (251)
..+++++||+-+.......... +....++..|.++.++.+
T Consensus 38 ~~~~ie~kg~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 80 (80)
T cd01037 38 AKLVIELKGTFHDGLLRKLRTSEKQERIAFLEADGKKVLRFWN 80 (80)
T ss_pred CCEEEEEECccccCchhhhhhcchHHHHHHHHHCCCEEEEEeC
Confidence 5788999999998765444433 567788888988887753
No 341
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=40.44 E-value=49 Score=30.03 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=32.9
Q ss_pred CccEEEEeccc-----cccCCCccCccH--HHHHHHHHHCCCeEEEEeCCC
Q 025564 29 RFKAWLLDQFG-----VLHDGKKPYPGA--ISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 29 ~~~~~l~D~DG-----vL~~g~~~~pGa--~e~L~~L~~~G~~v~ivTN~s 72 (251)
.++++.+|+|= ...-..+.+|.. .++++.|+++|+++++..+..
T Consensus 39 P~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~ 89 (339)
T cd06602 39 PLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPA 89 (339)
T ss_pred CcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCc
Confidence 35788888762 222233568998 999999999999998887643
No 342
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=40.33 E-value=18 Score=34.68 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=16.7
Q ss_pred CccEEEEeccccccCCCccCc
Q 025564 29 RFKAWLLDQFGVLHDGKKPYP 49 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~~~~p 49 (251)
+.+.++||+||||..+...+|
T Consensus 7 ~~~~~~fD~DGTLlrs~ssFp 27 (498)
T PLN02499 7 TSYSVVSELEGTLLKDADPFS 27 (498)
T ss_pred ccceEEEecccceecCCCccH
Confidence 457899999999999655544
No 343
>PRK08508 biotin synthase; Provisional
Probab=40.02 E-value=1.3e+02 Score=26.43 Aligned_cols=60 Identities=10% Similarity=0.014 Sum_probs=36.7
Q ss_pred ccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 30 ~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
...|.+ +++........++-..++++.+++.+..+.+.+++.....+..++|++.|++..
T Consensus 57 ~~~~~l-v~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~ 116 (279)
T PRK08508 57 ALGFCL-VTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSY 116 (279)
T ss_pred CCEEEE-EeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEE
Confidence 455555 322221123455677888899998875565554445434556688989998754
No 344
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=39.69 E-value=2.3e+02 Score=23.91 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=43.8
Q ss_pred hhccCChHHHhcccCccEEEEeccccccCCCccCcc--------HHHHHHHHHHCCCeEEEEeCCC
Q 025564 15 FQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPG--------AISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pG--------a~e~L~~L~~~G~~v~ivTN~s 72 (251)
....+.+++++. +.|..+..+++++........+ -.+.++.|++.|+.++-+-||.
T Consensus 20 ~~~~~~v~~~~~--~aD~~~~NlE~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~G~d~~~laNNH 83 (239)
T smart00854 20 SPPFAGVKPLLR--AADLAIGNLETPITGSGSPASGKKYPNFRAPPENAAALKAAGFDVVSLANNH 83 (239)
T ss_pred chHHHHHHHHHh--cCCEeEEEeeccccCCCCCCCCCCceEecCCHHHHHHHHHhCCCEEEeccCc
Confidence 344567889999 9999999999999876543332 3578999999999998888764
No 345
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=38.76 E-value=62 Score=27.17 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=26.3
Q ss_pred ccccCCCccC--cc-HHHHHHHHHHCCCeEEEEeCCC
Q 025564 39 GVLHDGKKPY--PG-AISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 39 GvL~~g~~~~--pG-a~e~L~~L~~~G~~v~ivTN~s 72 (251)
++-+.|.+|. |. ..++++.+++.|.++.+.||..
T Consensus 68 ~I~~~GGEPll~~~~~~~li~~~~~~g~~~~i~TNG~ 104 (235)
T TIGR02493 68 GVTFSGGEPLLQPEFLSELFKACKELGIHTCLDTSGF 104 (235)
T ss_pred eEEEeCcccccCHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 4555566653 55 4589999999999999999995
No 346
>COG3876 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.55 E-value=41 Score=30.53 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=41.6
Q ss_pred HHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeC
Q 025564 22 RHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN 70 (251)
Q Consensus 22 ~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN 70 (251)
++.++ ..|.++||+..|=.+.-..+--...++++.++.|++++++--
T Consensus 118 ~emle--~~DV~vfDiQDvG~R~Ytyiytm~yameAs~e~~k~fiVLDR 164 (409)
T COG3876 118 KEMLE--DCDVFVFDIQDVGVRSYTYIYTMAYAMEASAENGKEFIVLDR 164 (409)
T ss_pred HHHHh--cCCEEEEechhccceehhHHHHHHHHHHHHHHcCCceEEeCC
Confidence 78999 999999999999888777777778889999999999999874
No 347
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=38.51 E-value=1e+02 Score=27.25 Aligned_cols=42 Identities=21% Similarity=0.254 Sum_probs=32.5
Q ss_pred ccEEEEecccc-------ccCCCccCccHHHHHHHHHHCCCeEEEEeCC
Q 025564 30 FKAWLLDQFGV-------LHDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (251)
Q Consensus 30 ~~~~l~D~DGv-------L~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~ 71 (251)
++.+.+|.|=. ..-..+-+|..+++++.|+++|+++++..+-
T Consensus 40 ~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P 88 (308)
T cd06593 40 CDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINP 88 (308)
T ss_pred eeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecC
Confidence 57888887432 2223467899999999999999999988763
No 348
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=38.12 E-value=64 Score=30.67 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=42.3
Q ss_pred EEEEeccccccCCCc--cCccHHHHHHHHHHCCCeEEEEeCCCCCc----hhHHHHhH-hCCCCCc
Q 025564 32 AWLLDQFGVLHDGKK--PYPGAISTLEMLATTGAKMVVISNSSRRA----STTIDKLK-SLGFDPS 90 (251)
Q Consensus 32 ~~l~D~DGvL~~g~~--~~pGa~e~L~~L~~~G~~v~ivTN~s~~~----~~~~~~L~-~~Gl~~~ 90 (251)
+++.--||++.+=.+ ..+-=...++.|++.|+|++++=|+.++. .++++.|+ +.+.+..
T Consensus 148 GiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVl 213 (492)
T PF09547_consen 148 GIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVL 213 (492)
T ss_pred eEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEE
Confidence 788889999986442 33444568999999999999999987532 34556664 4676654
No 349
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=37.97 E-value=84 Score=32.06 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=43.8
Q ss_pred CccEEEEecc-cc-----ccCCCccCccHHHHHHHHHHCCCeEEEEeCCC-CCchhHHHHhHhCCCCC
Q 025564 29 RFKAWLLDQF-GV-----LHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDP 89 (251)
Q Consensus 29 ~~~~~l~D~D-Gv-----L~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s-~~~~~~~~~L~~~Gl~~ 89 (251)
..++|.+|+| .. ..=...-+|..+.++++|+++|.++++.-|-. .....+-+.+.+.|+-.
T Consensus 295 P~d~~~lD~~~~~~~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~ 362 (772)
T COG1501 295 PLDVFVLDIDFWMDNWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFV 362 (772)
T ss_pred cceEEEEeehhhhccccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEE
Confidence 4589999998 22 11123568999999999999999999999865 22224556677777654
No 350
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=37.82 E-value=1.6e+02 Score=25.22 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=27.9
Q ss_pred cCccHHHHHHH-HHHCCCeEEEEeCCCCCc------hhHHHHhHhCCCCCcc
Q 025564 47 PYPGAISTLEM-LATTGAKMVVISNSSRRA------STTIDKLKSLGFDPSL 91 (251)
Q Consensus 47 ~~pGa~e~L~~-L~~~G~~v~ivTN~s~~~------~~~~~~L~~~Gl~~~~ 91 (251)
..+...+.+.. ++..+++++|+=-+++.. +...+.|+++|+....
T Consensus 16 ~~~~~~~~i~n~l~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~ 67 (224)
T COG3340 16 VLEHFLPFIANFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSE 67 (224)
T ss_pred hhhhhhHHHHHHhcCCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeee
Confidence 34555555544 666677998887666432 2345667778887653
No 351
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=37.66 E-value=1.8e+02 Score=25.04 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=31.0
Q ss_pred EEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564 32 AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 32 ~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s 72 (251)
.++.|+|. |..-.....++++...++|++-+++|+-.
T Consensus 7 HIlp~iDD----Gp~s~eesl~ml~~A~~qGvt~iVaTsHh 43 (254)
T COG4464 7 HILPDIDD----GPKSLEESLAMLREAVRQGVTKIVATSHH 43 (254)
T ss_pred cccCCCCC----CCCcHHHHHHHHHHHHHcCceEEeecccc
Confidence 56777774 77888889999999999999999999743
No 352
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=37.64 E-value=2.2e+02 Score=26.22 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=36.4
Q ss_pred cCCCchhccCChHHHhcccCccEEEEeccccccCCCccCc--cHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHh
Q 025564 10 NDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYP--GAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS 84 (251)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~p--Ga~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~ 84 (251)
..|+=.....+|.+++. +.+. .-+. ....+.+.||+.|--.+.++......+...++++.
T Consensus 87 ~~~s~~~~~~~l~~~l~--~~~i-------------pgi~gvDTR~l~~~iR~~G~~~~~i~~~~~~~~~~~~~~~~ 148 (360)
T PRK12564 87 DIPSNWRSEMSLDEYLK--ENGI-------------PGISGIDTRALTRKLREKGAMKGVIATEDFDAEELLEKARA 148 (360)
T ss_pred CCCCccccccCHHHHHH--HCCC-------------CCCCCCcHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHc
Confidence 34555566778888888 4321 1122 35678899999999888777643222333444443
No 353
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=37.63 E-value=21 Score=29.42 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=19.4
Q ss_pred EEEEeccccccCCCccCccHHHHHH
Q 025564 32 AWLLDQFGVLHDGKKPYPGAISTLE 56 (251)
Q Consensus 32 ~~l~D~DGvL~~g~~~~pGa~e~L~ 56 (251)
-+.+|+|||+.+.....|--.+.++
T Consensus 8 ~~ciDIDGtit~~~t~~~~~n~~f~ 32 (194)
T COG5663 8 RCCIDIDGTITDDPTFAPYLNPAFE 32 (194)
T ss_pred heeeccCCceecCcccchhccHHHH
Confidence 4789999999999888775555444
No 354
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=37.61 E-value=42 Score=27.15 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=26.3
Q ss_pred cEEEEeccccc---cCCCccCccHHHHHHHHHHC
Q 025564 31 KAWLLDQFGVL---HDGKKPYPGAISTLEMLATT 61 (251)
Q Consensus 31 ~~~l~D~DGvL---~~g~~~~pGa~e~L~~L~~~ 61 (251)
..|++|=||++ |+..++.+++.++++.|++.
T Consensus 122 ~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 122 STFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred eEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 47999999998 55677889999999999864
No 355
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=37.48 E-value=63 Score=28.96 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=35.7
Q ss_pred ccccccCCCcc--CccHHHHHHHHHH-CCC-eEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 37 QFGVLHDGKKP--YPGAISTLEMLAT-TGA-KMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 37 ~DGvL~~g~~~--~pGa~e~L~~L~~-~G~-~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
+..+.+.|.+| .++..++++.+++ .|+ .+.+.||..... +..+.|.+.|+.
T Consensus 60 v~~V~ltGGEPll~~~l~~li~~i~~~~gi~~v~itTNG~ll~-~~~~~L~~~gl~ 114 (334)
T TIGR02666 60 VRKVRLTGGEPLLRKDLVELVARLAALPGIEDIALTTNGLLLA-RHAKDLKEAGLK 114 (334)
T ss_pred CCEEEEECccccccCCHHHHHHHHHhcCCCCeEEEEeCchhHH-HHHHHHHHcCCC
Confidence 34444555554 3789999999987 578 889999876433 356778777765
No 356
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=37.46 E-value=37 Score=29.80 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=37.9
Q ss_pred CCeEEEEeCCCC-CchhHHHHhHhCCCCCccccceeechhhHHHHHhccC
Q 025564 62 GAKMVVISNSSR-RASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRD 110 (251)
Q Consensus 62 G~~v~ivTN~s~-~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~~~~ 110 (251)
-..|+++|+|+. +--.+.+.+++.|+++. ...+|++.....||+-.+
T Consensus 36 ~VEVVllSRNspdTGlRv~nSI~hygL~It--R~~ft~G~~~~~Yl~af~ 83 (264)
T PF06189_consen 36 LVEVVLLSRNSPDTGLRVFNSIRHYGLDIT--RAAFTGGESPYPYLKAFN 83 (264)
T ss_pred ceEEEEEecCCHHHHHHHHHhHHHhCCcce--eeeecCCCCHHHHHHHhC
Confidence 456899999884 33456778899999987 689999999999998664
No 357
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=37.37 E-value=1e+02 Score=27.95 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=37.1
Q ss_pred EeccccccCCCccC--ccHHHHHHHHHHCCCe-EEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 35 LDQFGVLHDGKKPY--PGAISTLEMLATTGAK-MVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 35 ~D~DGvL~~g~~~~--pGa~e~L~~L~~~G~~-v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
+-++=|-..|.+|. .+..+.++.+++.++. +.+-||... ....+..|+..|+..
T Consensus 58 ~Gv~kvRlTGGEPllR~dl~eIi~~l~~~~~~~islTTNG~~-L~~~a~~Lk~AGl~r 114 (322)
T COG2896 58 LGVEKVRLTGGEPLLRKDLDEIIARLARLGIRDLSLTTNGVL-LARRAADLKEAGLDR 114 (322)
T ss_pred cCcceEEEeCCCchhhcCHHHHHHHHhhcccceEEEecchhh-HHHHHHHHHHcCCcE
Confidence 33555566677664 7888999999887664 555566654 234678899999873
No 358
>PRK06242 flavodoxin; Provisional
Probab=37.00 E-value=1.3e+02 Score=23.17 Aligned_cols=45 Identities=27% Similarity=0.292 Sum_probs=29.1
Q ss_pred CccCccHHHHHHHHHH-CCCeEEEEeCCCC-C---chhHHHHhHhCCCCC
Q 025564 45 KKPYPGAISTLEMLAT-TGAKMVVISNSSR-R---ASTTIDKLKSLGFDP 89 (251)
Q Consensus 45 ~~~~pGa~e~L~~L~~-~G~~v~ivTN~s~-~---~~~~~~~L~~~Gl~~ 89 (251)
..+.|...++|+++.. .|++++++++... . ...+.+.|+..|+..
T Consensus 56 ~~~~~~~~~fl~~~~~~~~k~~~~f~t~g~~~~~~~~~l~~~l~~~g~~~ 105 (150)
T PRK06242 56 GKFHKSLLKLIEKLPPVSGKKAFIFSTSGLPFLKYHKALKKKLKEKGFEI 105 (150)
T ss_pred CCcCHHHHHHHHhhhhhcCCeEEEEECCCCCcchHHHHHHHHHHHCCCEE
Confidence 4567889999998866 6888888776542 1 123444555555543
No 359
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=37.00 E-value=95 Score=21.94 Aligned_cols=62 Identities=11% Similarity=0.153 Sum_probs=36.5
Q ss_pred ChHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHC--CCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 20 GLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATT--GAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 20 ~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~--G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
.+.+.+....++.+++|++= +--...++++.|++. +.+++++|+..... .....-+.|...+
T Consensus 34 ~~~~~~~~~~~d~iiid~~~-------~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~--~~~~~~~~g~~~~ 97 (112)
T PF00072_consen 34 EALELLKKHPPDLIIIDLEL-------PDGDGLELLEQIRQINPSIPIIVVTDEDDSD--EVQEALRAGADDY 97 (112)
T ss_dssp HHHHHHHHSTESEEEEESSS-------SSSBHHHHHHHHHHHTTTSEEEEEESSTSHH--HHHHHHHTTESEE
T ss_pred HHHHHhcccCceEEEEEeee-------ccccccccccccccccccccEEEecCCCCHH--HHHHHHHCCCCEE
Confidence 33444554567889988432 112455777888774 48899999765422 2233346676543
No 360
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=36.97 E-value=2.9e+02 Score=24.21 Aligned_cols=24 Identities=13% Similarity=0.385 Sum_probs=20.8
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCC
Q 025564 49 PGAISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 49 pGa~e~L~~L~~~G~~v~ivTN~s 72 (251)
.-..|-+..|++.|..+.++|+..
T Consensus 35 a~IVEqV~~L~~~G~evilVSSGa 58 (285)
T KOG1154|consen 35 ASIVEQVSELQRMGREVILVSSGA 58 (285)
T ss_pred HHHHHHHHHHHhcCceEEEEecch
Confidence 456788999999999999999875
No 361
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=36.94 E-value=1.7e+02 Score=24.56 Aligned_cols=68 Identities=21% Similarity=0.285 Sum_probs=45.0
Q ss_pred ccccccCCCchhccCChHHHhcc---cCccEEEEecccccc--CCCcc-CccHHHHHHHHHHCCC-eEEEEeCCC
Q 025564 5 CSVQSNDPHLFQTLNGLRHIAET---RRFKAWLLDQFGVLH--DGKKP-YPGAISTLEMLATTGA-KMVVISNSS 72 (251)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~D~DGvL~--~g~~~-~pGa~e~L~~L~~~G~-~v~ivTN~s 72 (251)
||-++-|.++=--+|+-+|+..+ ..|++.-+=+.|+|- +|..| --+..++++++.+... .++++||.+
T Consensus 72 Csd~~Rd~~~icVVe~p~Dv~a~E~~~~f~G~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnpT 146 (198)
T COG0353 72 CSDESRDKSQLCVVEEPKDVLALEKTGEFRGLYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNPT 146 (198)
T ss_pred cCCcccCCceEEEEcchHHHHHHHHhcccCeeEEEecCccCcccCCCcccccHHHHHHHHhcCCCceEEEecCCC
Confidence 44444555543344555655431 258888888888885 34333 2367888999998887 999999976
No 362
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=36.60 E-value=67 Score=22.28 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=21.5
Q ss_pred CccEEEEeccccccCCCccCccHHHHHHHHHHCCCeE-EEEeCC
Q 025564 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKM-VVISNS 71 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v-~ivTN~ 71 (251)
+++.+.+|+.- ...+.|+.|+++|+++ +.+|-.
T Consensus 26 ~~~v~~iD~~~----------~~~~~I~~L~~~G~~vicY~s~G 59 (74)
T PF03537_consen 26 DVDVVVIDLFD----------FSKEEIARLKAQGKKVICYFSIG 59 (74)
T ss_dssp S-SEEEE-SBS------------HHHHHHHHHTT-EEEEEEESS
T ss_pred CCCEEEECCcc----------CCHHHHHHHHHCCCEEEEEEeCc
Confidence 78888888875 4578899999999875 445543
No 363
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=36.19 E-value=12 Score=27.83 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=23.8
Q ss_pred ccccCCCccC-----ccHHHHHHHHHHCC--CeEEEEeCCCCC
Q 025564 39 GVLHDGKKPY-----PGAISTLEMLATTG--AKMVVISNSSRR 74 (251)
Q Consensus 39 GvL~~g~~~~-----pGa~e~L~~L~~~G--~~v~ivTN~s~~ 74 (251)
++.+.|.+|. +...++++++++.+ +.+.+.||....
T Consensus 50 ~v~~~GGEPll~~~~~~l~~~i~~~~~~~~~~~i~i~TNg~~~ 92 (119)
T PF13394_consen 50 TVVFTGGEPLLYLNPEDLIELIEYLKERGPEIKIRIETNGTLP 92 (119)
T ss_dssp EEEEESSSGGGSTTHHHHHHHHCTSTT-----EEEEEE-STTH
T ss_pred EEEEECCCCccccCHHHHHHHHHHHHhhCCCceEEEEeCCeec
Confidence 4556667766 45678888888888 999999997753
No 364
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=36.08 E-value=40 Score=31.56 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=42.7
Q ss_pred cCChHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCc
Q 025564 18 LNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA 75 (251)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~ 75 (251)
.++++++++ +|. .|.+||++..--.--....+++..+.+.++|+.++||.-+-+
T Consensus 325 ~~dlkei~~--~f~--~~~i~~~I~TKlDET~s~G~~~s~~~e~~~PV~YvT~GQ~VP 378 (407)
T COG1419 325 YEDLKEIIK--QFS--LFPIDGLIFTKLDETTSLGNLFSLMYETRLPVSYVTNGQRVP 378 (407)
T ss_pred hHHHHHHHH--Hhc--cCCcceeEEEcccccCchhHHHHHHHHhCCCeEEEeCCCCCC
Confidence 357788888 554 578889988766666777888999999999999999987543
No 365
>PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X.
Probab=35.69 E-value=6.6 Score=27.08 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=23.0
Q ss_pred EeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 35 LDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 35 ~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
||-||++.....- ...+.+.|++....+++...|.++|+...
T Consensus 8 fd~DG~v~~~~~~--------------~~~i~~~~~s~~ll~~v~~lL~~lGi~~~ 49 (77)
T PF14528_consen 8 FDGDGSVSKNRRK--------------SVRISISSKSKELLEDVQKLLLRLGIKAS 49 (77)
T ss_dssp HHHHEEEECCSEC--------------EEEEEEEES-HHHHHHHHHHHHHTT--EE
T ss_pred hcCCccEECCCCc--------------EEEEEEEECCHHHHHHHHHHHHHCCCeeE
Confidence 5677776644321 22445555443445677788888999754
No 366
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=35.34 E-value=52 Score=26.45 Aligned_cols=29 Identities=10% Similarity=0.188 Sum_probs=23.7
Q ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCCCc
Q 025564 47 PYPGAISTLEMLATTGAKMVVISNSSRRA 75 (251)
Q Consensus 47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~ 75 (251)
--+.+.++++.++++|.+++.+|++..++
T Consensus 84 ~t~~~i~~~~~ak~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 84 ETESLVTVAKKAKEIGATVAAITTNPEST 112 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 35678888999999999999999987543
No 367
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=35.34 E-value=77 Score=22.46 Aligned_cols=48 Identities=17% Similarity=0.157 Sum_probs=32.8
Q ss_pred cCCCccCccHHHHHHHHHHCCCeEEEEeCCCCC--chhHHHHhHhCCCCC
Q 025564 42 HDGKKPYPGAISTLEMLATTGAKMVVISNSSRR--ASTTIDKLKSLGFDP 89 (251)
Q Consensus 42 ~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~--~~~~~~~L~~~Gl~~ 89 (251)
-+..++.-|..+.++.+++...+.+|+.++... ...+...-+..+++.
T Consensus 7 ~ragkl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~ 56 (82)
T PRK13602 7 SQAKSIVIGTKQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPV 56 (82)
T ss_pred HhcCCEEEcHHHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 355678899999999999877777777776532 233434445567664
No 368
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=35.03 E-value=1.5e+02 Score=26.39 Aligned_cols=41 Identities=10% Similarity=0.147 Sum_probs=20.4
Q ss_pred HHHhCCCcEEEccCCccccccCceeeCchHHHHHHHHhCCCeEEecCCC
Q 025564 180 ICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPD 228 (251)
Q Consensus 180 ~~~~~g~~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~g~~~~~~GKP~ 228 (251)
.+.++|..++ |.+||.-.. .=..++.+..-|.+.+++||++
T Consensus 86 ~~~~~g~~vi----DaTCP~V~k----~~~~v~~~~~~Gy~iviiG~~~ 126 (281)
T PRK12360 86 DLKDKGLEII----DATCPFVKK----IQNIVEEYYNKGYSIIIVGDKN 126 (281)
T ss_pred HHHHCCCeEE----eCCCccchH----HHHHHHHHHhCCCEEEEEcCCC
Confidence 3445677766 667764221 0011122222255677888775
No 369
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=34.96 E-value=74 Score=32.80 Aligned_cols=50 Identities=8% Similarity=0.174 Sum_probs=37.3
Q ss_pred ccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 39 GvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
|++-..+...||+.++++.++++|+.+..+|...-.++ ...-.+.|+-..
T Consensus 640 aivGIkDPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TA--kAIA~eCGILt~ 689 (1034)
T KOG0204|consen 640 AIVGIKDPVRPGVPEAVQLCQRAGITVRMVTGDNINTA--KAIARECGILTP 689 (1034)
T ss_pred EEeeccCCCCCCcHHHHHHHHHcCcEEEEEeCCcHHHH--HHHHHHcccccC
Confidence 44445667889999999999999999999998764332 233456888654
No 370
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=34.85 E-value=1.3e+02 Score=27.62 Aligned_cols=88 Identities=16% Similarity=0.134 Sum_probs=57.6
Q ss_pred cCChHHHhcccCccEEEEeccccccCCC---ccCccHHHHHHHHHHCCCeEEEEeCCCCC---ch---hHHHHhHhCCCC
Q 025564 18 LNGLRHIAETRRFKAWLLDQFGVLHDGK---KPYPGAISTLEMLATTGAKMVVISNSSRR---AS---TTIDKLKSLGFD 88 (251)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~D~DGvL~~g~---~~~pGa~e~L~~L~~~G~~v~ivTN~s~~---~~---~~~~~L~~~Gl~ 88 (251)
.+.+...++ ...|+|-+=...+-.+.. -..+...+.++.+++.|+++.+++|.... .+ ++.++|.++|.
T Consensus 16 l~~l~~ai~-~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~Gv- 93 (347)
T COG0826 16 LEDLKAAIA-AGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGV- 93 (347)
T ss_pred HHHHHHHHH-cCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCC-
Confidence 344444444 134666666553332222 34567899999999999999999997632 12 34455666665
Q ss_pred CccccceeechhhHHHHHhccCc
Q 025564 89 PSLFAGAITSGELTHQYLLRRDD 111 (251)
Q Consensus 89 ~~~~~~Iits~~~~~~~L~~~~~ 111 (251)
+.|+-++-....++++.++
T Consensus 94 ----Daviv~Dpg~i~l~~e~~p 112 (347)
T COG0826 94 ----DAVIVADPGLIMLARERGP 112 (347)
T ss_pred ----CEEEEcCHHHHHHHHHhCC
Confidence 5678888888888887763
No 371
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=34.45 E-value=1.2e+02 Score=26.64 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=49.4
Q ss_pred ccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 30 ~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
.+.+++=+.|......++++...+-+..|+..|.+.+++=... .++.+.|+++|++..
T Consensus 2 ~k~~VIK~GG~~~~~~~l~~~~~~di~lL~~~G~~~VvVHGgg---p~I~~~l~~~gie~~ 59 (265)
T COG0548 2 GKTIVIKLGGSAMEDENLLEAFASDIALLKSVGIRPVVVHGGG---PQIDEMLAKLGIEPE 59 (265)
T ss_pred CceEEEEECceeecCchHHHHHHHHHHHHHHCCCcEEEEeCCc---hHHHHHHHHcCCCCe
Confidence 3678888999999999999999999999999999998888765 246688999999876
No 372
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=34.24 E-value=46 Score=26.43 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=27.7
Q ss_pred ccccccCCCccC-----ccHHHHHHHHHHC-CCeEEEEeCCCC
Q 025564 37 QFGVLHDGKKPY-----PGAISTLEMLATT-GAKMVVISNSSR 73 (251)
Q Consensus 37 ~DGvL~~g~~~~-----pGa~e~L~~L~~~-G~~v~ivTN~s~ 73 (251)
..||...|.+|+ +...++++.+++. |.+.++.||...
T Consensus 64 ~~gVt~sGGEPllq~~~~~l~~ll~~~k~~~~~~~~~~~tG~~ 106 (154)
T TIGR02491 64 IDGLTLSGGDPLYPRNVEELIELVKKIKAEFPEKDIWLWTGYT 106 (154)
T ss_pred cCeEEEeChhhCCCCCHHHHHHHHHHHHHhCCCCCEEEeeCcc
Confidence 478888888887 3567788888876 677777887654
No 373
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=34.20 E-value=1.9e+02 Score=22.89 Aligned_cols=13 Identities=8% Similarity=-0.041 Sum_probs=11.0
Q ss_pred CccEEEEeccccc
Q 025564 29 RFKAWLLDQFGVL 41 (251)
Q Consensus 29 ~~~~~l~D~DGvL 41 (251)
+|+.+++|.=+.+
T Consensus 92 ~~d~viiDtpp~~ 104 (179)
T cd03110 92 GAELIIIDGPPGI 104 (179)
T ss_pred CCCEEEEECcCCC
Confidence 8999999988654
No 374
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=34.09 E-value=89 Score=28.00 Aligned_cols=67 Identities=16% Similarity=0.298 Sum_probs=42.7
Q ss_pred hHHHhcccCccEEEEecccccc--C----CCccCccHHHHHHHHHHCCCeEEEEe---CCC--CCchhHHHHhHhCCCC
Q 025564 21 LRHIAETRRFKAWLLDQFGVLH--D----GKKPYPGAISTLEMLATTGAKMVVIS---NSS--RRASTTIDKLKSLGFD 88 (251)
Q Consensus 21 ~~~~~~~~~~~~~l~D~DGvL~--~----g~~~~pGa~e~L~~L~~~G~~v~ivT---N~s--~~~~~~~~~L~~~Gl~ 88 (251)
+.++.+ ..+..+-+.+||.-- + +...+.-+.+.++.|++.|+++.+.| ++. ..-.++.+.+.++|++
T Consensus 116 ~~~l~~-~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~ 193 (318)
T TIGR03470 116 LDKFEP-SPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVD 193 (318)
T ss_pred HHHHHh-CCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCC
Confidence 444544 245678899999521 1 22346678889999999999987743 322 1223556677788875
No 375
>PF13466 STAS_2: STAS domain
Probab=33.80 E-value=1.5e+02 Score=20.11 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=43.9
Q ss_pred hccCChHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 16 QTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
.-.+.+.+++. +-+.+.+|+-+|=+-...-+-=...+.+.+++.|.++.+ +|-+ ..+.+.++.+|++
T Consensus 14 ~l~~~l~~~~~--~~~~v~lDls~v~~iDsagl~lL~~~~~~~~~~g~~~~l-~~~~---~~~~~ll~~~gld 80 (80)
T PF13466_consen 14 ELRQALQALLA--SGRPVVLDLSGVEFIDSAGLQLLLAAARRARARGRQLRL-TGPS---PALRRLLELLGLD 80 (80)
T ss_pred HHHHHHHHHHc--CCCeEEEECCCCCeecHHHHHHHHHHHHHHHHCCCeEEE-EcCC---HHHHHHHHHhCcC
Confidence 33445556666 457899999998776665554456666777788988777 4433 2355666667763
No 376
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=33.71 E-value=62 Score=26.99 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=27.5
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 48 ~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
.+++.++.+.|.+.|++++ .|.. -.+.|++.|++..
T Consensus 10 K~~l~~lAk~L~~lGf~I~-AT~G------TAk~L~e~GI~v~ 45 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL-STGG------TAKFLKEAGIPVT 45 (187)
T ss_pred cccHHHHHHHHHHCCCEEE-EccH------HHHHHHHcCCeEE
Confidence 6889999999999999974 5532 3367888888754
No 377
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=33.63 E-value=1.2e+02 Score=25.70 Aligned_cols=104 Identities=18% Similarity=0.194 Sum_probs=0.0
Q ss_pred cccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHHHHhccCchhhhhcCC
Q 025564 40 VLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGR 119 (251)
Q Consensus 40 vL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~~~~~~~~~~~g~ 119 (251)
||..|+..+-|....+...... -++-++-+ ...+.-.+.++|.+... -.++|.+.-..++++....+ |.
T Consensus 73 VLasGDP~f~G~g~~l~~~~~~-~~v~iIPg----iSS~q~a~ARlg~~~~~-~~~islHgr~~~~l~~~~~~-----~~ 141 (210)
T COG2241 73 VLASGDPLFSGVGRLLRRKFSC-EEVEIIPG----ISSVQLAAARLGWPLQD-TEVISLHGRPVELLRPLLEN-----GR 141 (210)
T ss_pred EEecCCcchhhhHHHHHHhcCc-cceEEecC----hhHHHHHHHHhCCChHH-eEEEEecCCCHHHHHHHHhC-----Cc
Q ss_pred eEEEeccCCcccc----cccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHH
Q 025564 120 SCIHMTWSDRGAI----SLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQD 173 (251)
Q Consensus 120 ~~~~~g~~~~~~~----~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~ 173 (251)
++.++.....+.. .|.+.|+ .+..++|+ .+++|++
T Consensus 142 ~~vil~~~~~~P~~IA~~L~~~G~------~~~~~~Vl-------------E~L~~~~ 180 (210)
T COG2241 142 RLVILTPDDFGPAEIAKLLTENGI------GDSRVTVL-------------ENLGYPD 180 (210)
T ss_pred eEEEeCCCCCCHHHHHHHHHhCCC------CCceEEEE-------------cccCCCc
No 378
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=33.59 E-value=58 Score=26.20 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=22.7
Q ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCCC
Q 025564 47 PYPGAISTLEMLATTGAKMVVISNSSRR 74 (251)
Q Consensus 47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~ 74 (251)
.-+.+.++++.++++|.+++.+||++.+
T Consensus 113 ~t~~~i~~~~~ak~~Ga~vI~IT~~~~s 140 (177)
T cd05006 113 NSPNVLKALEAAKERGMKTIALTGRDGG 140 (177)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 4578888888899999999999987643
No 379
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=33.42 E-value=85 Score=23.39 Aligned_cols=28 Identities=14% Similarity=0.335 Sum_probs=17.0
Q ss_pred CCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 61 TGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 61 ~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
...++++.-++..........|+++|+.
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~ 90 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQAGFT 90 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHHCCCC
Confidence 4666777666543333455667777775
No 380
>PRK07094 biotin synthase; Provisional
Probab=33.32 E-value=1.2e+02 Score=26.99 Aligned_cols=41 Identities=12% Similarity=0.108 Sum_probs=27.3
Q ss_pred CccHHHHHHHHHHC-CCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 48 YPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 48 ~pGa~e~L~~L~~~-G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
.+...++++.+++. +..+.+ +.... .++..+.|++.|+...
T Consensus 102 ~~~l~~l~~~i~~~~~l~i~~-~~g~~-~~e~l~~Lk~aG~~~v 143 (323)
T PRK07094 102 DEKIADIIKEIKKELDVAITL-SLGER-SYEEYKAWKEAGADRY 143 (323)
T ss_pred HHHHHHHHHHHHccCCceEEE-ecCCC-CHHHHHHHHHcCCCEE
Confidence 46788899999884 655543 32222 3456688999998754
No 381
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=32.88 E-value=2.4e+02 Score=22.06 Aligned_cols=27 Identities=0% Similarity=0.005 Sum_probs=21.5
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s 72 (251)
..++.+..+++..+++|.|+++++..+
T Consensus 20 ~~~~~i~~l~~~ar~~g~pVi~~~~~~ 46 (157)
T cd01012 20 ELINNTVKLAKAAKLLDVPVILTEQYP 46 (157)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeeCC
Confidence 456777788888899999999987654
No 382
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=32.75 E-value=59 Score=24.30 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=21.3
Q ss_pred cCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564 47 PYPGAISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 47 ~~pGa~e~L~~L~~~G~~v~ivTN~s 72 (251)
--+...++++.++++|.+++.+|+++
T Consensus 55 ~t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 55 NTEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 44677888889999999999999754
No 383
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.71 E-value=2e+02 Score=28.52 Aligned_cols=57 Identities=18% Similarity=0.114 Sum_probs=36.4
Q ss_pred EEEEeccccccCCCcc-CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 32 AWLLDQFGVLHDGKKP-YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 32 ~~l~D~DGvL~~g~~~-~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
.-++|+||-+.+-..- --.-.+.++...+.|+|++++|.-+..++.+.+.-..+|-.
T Consensus 257 iAvldldGevl~~~S~r~~~~~eVve~I~~lG~PvvVAtDVtp~P~~V~KiAasf~A~ 314 (652)
T COG2433 257 IAVLDLDGEVLDLESRRGIDRSEVVEFISELGKPVVVATDVTPAPETVKKIAASFNAV 314 (652)
T ss_pred EEEEecCCcEEeeeccccCCHHHHHHHHHHcCCceEEEccCCCChHHHHHHHHHcCCc
Confidence 4689999988764322 12446778888899999999998654333332222335543
No 384
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=32.55 E-value=78 Score=23.68 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=19.5
Q ss_pred CCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 61 TGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 61 ~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
.+.++++..++..........|+..|++
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~ 98 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKELGLE 98 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHcCCc
Confidence 4678888877654344466788999993
No 385
>PLN03190 aminophospholipid translocase; Provisional
Probab=32.29 E-value=68 Score=34.38 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=31.2
Q ss_pred ccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR 73 (251)
Q Consensus 39 GvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~ 73 (251)
|.+--.+++-+|+.++++.|+++|+++.++|+...
T Consensus 719 G~~~~~D~lr~~v~~~I~~l~~agi~v~mlTGD~~ 753 (1178)
T PLN03190 719 GASAIEDKLQQGVPEAIESLRTAGIKVWVLTGDKQ 753 (1178)
T ss_pred EEEEEecCCchhHHHHHHHHHHCCCEEEEECCCCH
Confidence 66667788999999999999999999999998653
No 386
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=32.29 E-value=34 Score=25.75 Aligned_cols=38 Identities=11% Similarity=0.123 Sum_probs=27.5
Q ss_pred CccEEEEeccccccCCCccCccHHHHHHHHHHC--CCeEEEEeCCC
Q 025564 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATT--GAKMVVISNSS 72 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~--G~~v~ivTN~s 72 (251)
++.++++|+| ........++++.+++. +.|++++++..
T Consensus 38 ~i~avvi~~d------~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 38 DIAAVVISWD------GEEEDEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp TEEEEEEECH------HHHHHHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred CeeEEEEEcc------cccchhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 5789999999 33345566778887655 77999999854
No 387
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=32.12 E-value=63 Score=30.30 Aligned_cols=60 Identities=15% Similarity=0.302 Sum_probs=35.0
Q ss_pred cCChHHHhcccCccEEEEeccccccC---CCccCcc-HHHHHHHHHH-CCCeEEEE-eCCC-C---CchhHHHHhHh
Q 025564 18 LNGLRHIAETRRFKAWLLDQFGVLHD---GKKPYPG-AISTLEMLAT-TGAKMVVI-SNSS-R---RASTTIDKLKS 84 (251)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~D~DGvL~~---g~~~~pG-a~e~L~~L~~-~G~~v~iv-TN~s-~---~~~~~~~~L~~ 84 (251)
.+.+.++++ ++ ++|||++. +-+++.+ .....+.+++ .|+|+..+ |.-+ . +..++..+++.
T Consensus 339 ~~~l~~l~k--e~-----~aDGVI~~~~~~C~~~~~e~~~~~~~l~e~~GIP~L~iE~D~~d~r~~d~gQ~~TRiEA 408 (413)
T TIGR02260 339 VDLLEKYIN--EY-----EADGLLINSIKSCNSFSAGQLLMMREIEKRTGKPAAFIETDLVDPRYFSAANVKNRLES 408 (413)
T ss_pred HHHHHHHHH--Hh-----CCCEEEEeccCCCCcchhhhHHHHHHHHHHcCCCEEEEEcCCCCcccCCHHHHHHHHHH
Confidence 344555555 33 46777764 4456665 5566677766 79997777 4433 1 22455555543
No 388
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=31.95 E-value=1e+02 Score=25.35 Aligned_cols=25 Identities=4% Similarity=-0.206 Sum_probs=19.0
Q ss_pred EecCCCHHHHHHHHHhcCCceEEEE
Q 025564 223 WMGKPDKVVQLLCSLSSSVIILFLI 247 (251)
Q Consensus 223 ~~GKP~~~~~~~a~~~l~~~~~~~~ 247 (251)
..+||.|.+|+.+++++++++--.+
T Consensus 148 ~~~~~k~~~~~~~~~~~~~~~~~~i 172 (219)
T TIGR00338 148 VDASYKGKTLLILLRKEGISPENTV 172 (219)
T ss_pred cCCcccHHHHHHHHHHcCCCHHHEE
Confidence 3467889999999999998754333
No 389
>PHA02597 30.2 hypothetical protein; Provisional
Probab=31.91 E-value=37 Score=27.59 Aligned_cols=16 Identities=0% Similarity=-0.039 Sum_probs=14.3
Q ss_pred cCCCHHHHHHHHHhcC
Q 025564 225 GKPDKVVQLLCSLSSS 240 (251)
Q Consensus 225 GKP~~~~~~~a~~~l~ 240 (251)
.||.|.+|..+++++|
T Consensus 129 ~~~kp~~~~~a~~~~~ 144 (197)
T PHA02597 129 DESKEKLFIKAKEKYG 144 (197)
T ss_pred CcccHHHHHHHHHHhC
Confidence 4778899999999999
No 390
>PLN02334 ribulose-phosphate 3-epimerase
Probab=31.88 E-value=67 Score=27.21 Aligned_cols=56 Identities=7% Similarity=-0.063 Sum_probs=36.1
Q ss_pred chhccCChHHHhcccCccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564 14 LFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSR 73 (251)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~ 73 (251)
.+..+.+..+.++ .++-...||+..+... .-+...+.++++++.|..+.+.+|..+
T Consensus 70 vhlmv~~p~d~~~----~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~t 126 (229)
T PLN02334 70 CHLMVTNPEDYVP----DFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPGT 126 (229)
T ss_pred EEeccCCHHHHHH----HHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCCC
Confidence 3444443344444 2234467888665552 345667899999999999999998543
No 391
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=31.72 E-value=69 Score=23.75 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=23.5
Q ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCCC
Q 025564 47 PYPGAISTLEMLATTGAKMVVISNSSRR 74 (251)
Q Consensus 47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~ 74 (251)
.-....+.++.++++|.+++.+|++..+
T Consensus 65 ~~~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 65 ETRELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred cchhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 3477888999999999999999987643
No 392
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=31.62 E-value=64 Score=24.27 Aligned_cols=49 Identities=29% Similarity=0.161 Sum_probs=33.7
Q ss_pred ccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC--CchhHHHHhHhCCCCC
Q 025564 41 LHDGKKPYPGAISTLEMLATTGAKMVVISNSSR--RASTTIDKLKSLGFDP 89 (251)
Q Consensus 41 L~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~--~~~~~~~~L~~~Gl~~ 89 (251)
-.+..+..-|..++++.+++...+.+|++++.. ....+...-+..+++.
T Consensus 20 a~raGKlv~G~~~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv 70 (108)
T PTZ00106 20 VMKSGKYTLGTKSTLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGV 70 (108)
T ss_pred HHHhCCeeecHHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCE
Confidence 345678889999999999987777777776643 2334444445566664
No 393
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=31.31 E-value=50 Score=24.62 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=24.9
Q ss_pred CCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 61 TGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 61 ~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
..|+.+++|++++..+-+.+.|.++|++..
T Consensus 15 ~~YKSIlvt~~~~a~~vV~eALeKygL~~e 44 (100)
T cd01781 15 RPYKTILLSINDNADRIVGEALEKYGLEKS 44 (100)
T ss_pred CCeEEEEecCCccHHHHHHHHHHHhCCCcc
Confidence 458889999988766678899999999865
No 394
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=31.20 E-value=69 Score=25.31 Aligned_cols=28 Identities=11% Similarity=0.232 Sum_probs=22.5
Q ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCCC
Q 025564 47 PYPGAISTLEMLATTGAKMVVISNSSRR 74 (251)
Q Consensus 47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~ 74 (251)
--+...++++.++++|.+++.+|+++.+
T Consensus 91 ~t~~~~~~~~~a~~~g~~ii~iT~~~~s 118 (154)
T TIGR00441 91 NSKNVLKAIEAAKDKGMKTITLAGKDGG 118 (154)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 4577888888889999999999987643
No 395
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=31.11 E-value=3.8e+02 Score=24.17 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=32.6
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 49 PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 49 pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
....+.++.+-+..-|.+|+|.+-..++++.+.-++.+++..
T Consensus 68 ~~r~~~i~~~~~~~~P~iI~sk~~~~p~~l~~~a~~~~~pil 109 (308)
T COG1493 68 EERKKRIGKLFSLDTPALIVSKGLPIPEELLDAAKKYNIPIL 109 (308)
T ss_pred hhHHHHHHHHhCcCCCEEEEECCCCCCHHHHHHHHHcCCceE
Confidence 345667888888899999999987666677777778888865
No 396
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=30.96 E-value=43 Score=28.65 Aligned_cols=49 Identities=22% Similarity=0.404 Sum_probs=26.8
Q ss_pred HHHHHHHHHHCCCeEEE--EeCCCC-CchhHHHHhHhCCCCCccccceeechh
Q 025564 51 AISTLEMLATTGAKMVV--ISNSSR-RASTTIDKLKSLGFDPSLFAGAITSGE 100 (251)
Q Consensus 51 a~e~L~~L~~~G~~v~i--vTN~s~-~~~~~~~~L~~~Gl~~~~~~~Iits~~ 100 (251)
..++++.|++.|-.|+| +||+++ .+..+.+.+++.|+... |-+.+..+.
T Consensus 84 l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vl-FIEsic~D~ 135 (222)
T PF01591_consen 84 LEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVL-FIESICDDP 135 (222)
T ss_dssp HHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEE-EEEEE---H
T ss_pred HHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEE-EEEEEeCCH
Confidence 35577788867778887 577775 34567788888887766 444444443
No 397
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=30.88 E-value=1.1e+02 Score=22.50 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=32.6
Q ss_pred CCCccCccHHHHHHHHHHCCCeEEEEeCCCC--CchhHHHHhHhCCCCC
Q 025564 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSR--RASTTIDKLKSLGFDP 89 (251)
Q Consensus 43 ~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~--~~~~~~~~L~~~Gl~~ 89 (251)
+..++.-|..++++.+++...+++|++++.. ....+...-+..+++.
T Consensus 13 ragkl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~ 61 (99)
T PRK01018 13 DTGKVILGSKRTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPV 61 (99)
T ss_pred HcCCEEEcHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCE
Confidence 4567888999999999988888888887752 2233433335566664
No 398
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=30.82 E-value=54 Score=23.79 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=17.1
Q ss_pred CccCCHHHHHHHHHHHHhCCC
Q 025564 166 VRPMSLQDLEKILEICASKKI 186 (251)
Q Consensus 166 d~~~~~~~l~~a~~~~~~~g~ 186 (251)
-+.+||+++.+|+++.-++|.
T Consensus 49 k~~M~YeklSRaLRyyy~~~i 69 (87)
T smart00413 49 KPNMNYEKLSRALRYYYKKNI 69 (87)
T ss_pred CCCCCHHHHHHHHHHHHhcCc
Confidence 378999999999998766553
No 399
>PTZ00066 pyruvate kinase; Provisional
Probab=30.75 E-value=1.1e+02 Score=29.63 Aligned_cols=54 Identities=7% Similarity=-0.003 Sum_probs=32.6
Q ss_pred hhccCChHHHhcccCccEEEEec-cccccCCCccCccHHH-HHHHHHHCCCeEEEEeC
Q 025564 15 FQTLNGLRHIAETRRFKAWLLDQ-FGVLHDGKKPYPGAIS-TLEMLATTGAKMVVISN 70 (251)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~l~D~-DGvL~~g~~~~pGa~e-~L~~L~~~G~~v~ivTN 70 (251)
+..++++.++++ .-|++++.= |=-+.-..+-+|-+++ .++.+++.|+|++++|+
T Consensus 261 ~~av~NldeIl~--~sDGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQ 316 (513)
T PTZ00066 261 IEGLINFDEILA--ESDGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQ 316 (513)
T ss_pred HHHHHHHHHHHH--hcCEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEech
Confidence 455667888888 554444321 0000111233566655 67888999999999983
No 400
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=30.66 E-value=68 Score=23.82 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=20.1
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564 49 PGAISTLEMLATTGAKMVVISNSSR 73 (251)
Q Consensus 49 pGa~e~L~~L~~~G~~v~ivTN~s~ 73 (251)
+...++++.++++|.+++.+|++..
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~ 98 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSAN 98 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCC
Confidence 5677788888888888888888764
No 401
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=30.59 E-value=69 Score=22.91 Aligned_cols=67 Identities=22% Similarity=0.218 Sum_probs=34.5
Q ss_pred CChHHHhcccCccEEEEecccc-ccCCCccCccHH--------HHHHHHH-----HCCCeEEEEeCCCCCchhHHHHhHh
Q 025564 19 NGLRHIAETRRFKAWLLDQFGV-LHDGKKPYPGAI--------STLEMLA-----TTGAKMVVISNSSRRASTTIDKLKS 84 (251)
Q Consensus 19 ~~~~~~~~~~~~~~~l~D~DGv-L~~g~~~~pGa~--------e~L~~L~-----~~G~~v~ivTN~s~~~~~~~~~L~~ 84 (251)
+.+.++++ +-+.+++|+=.- =+. ..-+|||. +....+. ..+.++++.-++...+......|+.
T Consensus 7 ~~l~~~~~--~~~~~iiDvR~~~e~~-~ghi~gA~~ip~~~~~~~~~~~~~~~~~~~~~~ivvyC~~G~rs~~a~~~L~~ 83 (101)
T cd01518 7 AEWNELLE--DPEVVLLDVRNDYEYD-IGHFKGAVNPDVDTFREFPFWLDENLDLLKGKKVLMYCTGGIRCEKASAYLKE 83 (101)
T ss_pred HHHHHHHc--CCCEEEEEcCChhhhh-cCEeccccCCCcccHhHhHHHHHhhhhhcCCCEEEEECCCchhHHHHHHHHHH
Confidence 34556666 556788887321 121 12233332 1122221 3566777776655323344567788
Q ss_pred CCCC
Q 025564 85 LGFD 88 (251)
Q Consensus 85 ~Gl~ 88 (251)
+|+.
T Consensus 84 ~G~~ 87 (101)
T cd01518 84 RGFK 87 (101)
T ss_pred hCCc
Confidence 8886
No 402
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=30.52 E-value=3.9e+02 Score=24.57 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=37.0
Q ss_pred CccEEEEeccccccCCC------ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 29 RFKAWLLDQFGVLHDGK------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
+.+.+++=+=|...... ..+....+.+..+++.|++++++++.+ +..-+..+|+...
T Consensus 7 ~~~~iVIKiGGs~l~~~~~~l~~~~i~~la~~I~~l~~~g~~vViV~sGa-----i~~g~~~l~l~~~ 69 (372)
T PRK05429 7 DARRIVVKVGSSLLTGGGGGLDRARIAELARQIAALRAAGHEVVLVSSGA-----VAAGRERLGLPER 69 (372)
T ss_pred hCCEEEEEeChhhccCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEcccH-----hhhhHhhcCCCCC
Confidence 55677777877665432 234556677788899999999999654 2223334666543
No 403
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=30.27 E-value=1.3e+02 Score=27.22 Aligned_cols=71 Identities=25% Similarity=0.261 Sum_probs=45.9
Q ss_pred EEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCCCccccceeechhhHHHHHhccC
Q 025564 34 LLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRD 110 (251)
Q Consensus 34 l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~~~~ 110 (251)
++|+.||=.+|.+.++=..-+---+...|++++.-.|.+. +...-.+.|+.+|++... +.+.+...|.+.+
T Consensus 71 ~iD~~gtggdg~~t~nist~~a~vlA~~G~~V~kHG~r~~~s~~Gs~d~le~LGi~~~~------s~~~~~~~l~~~g 142 (330)
T TIGR01245 71 LVDIVGTGGDGANTINISTASAFVAAAAGVKVAKHGNRSVSSKSGSADVLEALGVNLDL------GPEKVARSLEETG 142 (330)
T ss_pred cccccCCCCCCCCccccHHHHHHHHHhCCCEEEEeCCCCCCCCccHHHHHHHcCCCCCC------CHHHHHHHHHHhC
Confidence 6788898888886654322233345788999999998763 233346889999998641 2333445555443
No 404
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=30.18 E-value=26 Score=22.05 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=11.0
Q ss_pred HHHHHHHHCCCeEEEEeCCC
Q 025564 53 STLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 53 e~L~~L~~~G~~v~ivTN~s 72 (251)
|+.+.|++.|.+..=+|.++
T Consensus 10 eL~~~L~~~G~~~gPIt~sT 29 (44)
T smart00540 10 ELRAELKQYGLPPGPITDTT 29 (44)
T ss_pred HHHHHHHHcCCCCCCcCcch
Confidence 44555566666655555444
No 405
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=30.18 E-value=1.1e+02 Score=26.63 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=33.3
Q ss_pred CccEEEEecccc-----c--cCCCccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564 29 RFKAWLLDQFGV-----L--HDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 29 ~~~~~l~D~DGv-----L--~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s 72 (251)
..+++.+|.+=. . .-..+-+|...++++.|+++|+++++.++..
T Consensus 39 P~d~~~lD~~~~~~~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~ 89 (265)
T cd06589 39 PLDGFVLDDDYTDGYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPY 89 (265)
T ss_pred CccEEEECcccccCCceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChh
Confidence 357888887632 2 1123468999999999999999999988765
No 406
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=30.17 E-value=66 Score=28.84 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=28.7
Q ss_pred CCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCCCcEEEccCCccc
Q 025564 145 VEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVT 197 (251)
Q Consensus 145 ~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g~~li~~n~D~~~ 197 (251)
.+++|++|+.| .|+..+...+...+..+.++|+++|+.+|...-
T Consensus 154 ~~~ad~il~~G---------~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~ 197 (374)
T cd00368 154 IENADLILLWG---------SNPAETHPVLAARLRRAKKRGAKLIVIDPRRTE 197 (374)
T ss_pred HhhCCEEEEEc---------CChHHhChHHHHHHHHHHHCCCeEEEEcCCCCc
Confidence 45788888854 344444444444454456789999999887753
No 407
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=30.07 E-value=1.1e+02 Score=23.85 Aligned_cols=54 Identities=17% Similarity=0.109 Sum_probs=34.1
Q ss_pred cCChHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCC
Q 025564 18 LNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (251)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~ 71 (251)
.+.++.+....+-=.+.||.|-.-..-..+.-...++-+.|+++|..+.+++=+
T Consensus 58 ~p~L~~~~~~gr~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G~~v~~~~w~ 111 (130)
T PF12965_consen 58 IPELAKLAKPGREVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAGCKVKIITWP 111 (130)
T ss_pred chhHHHhccCCceEEEEecCCCccchhHHHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 455666653112236899999543333344455566777788999999998844
No 408
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=29.65 E-value=1.8e+02 Score=31.28 Aligned_cols=91 Identities=18% Similarity=0.223 Sum_probs=54.7
Q ss_pred CCCccEEEEecCCCCCCCCCCCccCC-HHHHHHHHHHHHhCCCcEEEccCCcccccc--C-ceeeCch---HHHHHHHH-
Q 025564 145 VEEADFILAHGTEGMGLPSGDVRPMS-LQDLEKILEICASKKIPMVVANPDYVTVEA--R-ALRVMPG---TLASKFEK- 216 (251)
Q Consensus 145 ~~~~~~Vvv~~~~~~~~~~g~d~~~~-~~~l~~a~~~~~~~g~~li~~n~D~~~~~~--~-~~~~~~G---~i~~~~~~- 216 (251)
..+++++|+-|. ++..+ ........ .+..+|+++|+..|+..-... + .+.+-+| |++.++..
T Consensus 243 ~~nS~~II~WGs---------N~~~T~~p~a~~l~-eAr~rGaKvVVVDPr~t~tA~~AD~WLpIrPGTD~ALaLAm~hv 312 (1235)
T TIGR01580 243 WYNSSYIIAWGS---------NVPQTRTPDAHFFT-EVRYKGTKTVAITPDYAEIAKLCDLWLAPKQGTDAALALAMGHV 312 (1235)
T ss_pred hhcCCEEEEECC---------ChhhhcchhHHHHH-HHHHcCCeEEEEcCCCChhhHhhCEEeCCCCChHHHHHHHHHHH
Confidence 457889888533 22222 12233333 357789999999999876532 2 2334454 45444433
Q ss_pred hCCCeEEecCCCHHHHHHHHHhcCCceEEE
Q 025564 217 LGGEVRWMGKPDKVVQLLCSLSSSVIILFL 246 (251)
Q Consensus 217 ~g~~~~~~GKP~~~~~~~a~~~l~~~~~~~ 246 (251)
+= +-..+-+|++++-+++.+.-+.+=++.
T Consensus 313 II-~E~l~D~~~~~f~~yvk~yTdaPfLV~ 341 (1235)
T TIGR01580 313 IL-REFHLDNPSQYFTEYAKRYTDMPMLVM 341 (1235)
T ss_pred HH-HCCCcccccHHHHHHHHHhcCCceEEE
Confidence 21 113678899999999977666664443
No 409
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=29.59 E-value=2.3e+02 Score=23.30 Aligned_cols=64 Identities=20% Similarity=0.087 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhCCCcEEE-ccCCccccccCceeeCchHHHHHHHHhCCCe-EEecCCCHHHHHHHHHhcCCce--EEEE
Q 025564 172 QDLEKILEICASKKIPMVV-ANPDYVTVEARALRVMPGTLASKFEKLGGEV-RWMGKPDKVVQLLCSLSSSVII--LFLI 247 (251)
Q Consensus 172 ~~l~~a~~~~~~~g~~li~-~n~D~~~~~~~~~~~~~G~i~~~~~~~g~~~-~~~GKP~~~~~~~a~~~l~~~~--~~~~ 247 (251)
+.+..=+..+..+|+.+++ .|.... ... ...+..|... .-.+||++.-|..|++.+++++ ..||
T Consensus 49 pe~~~W~~e~k~~gi~v~vvSNn~e~-RV~-----------~~~~~l~v~fi~~A~KP~~~~fr~Al~~m~l~~~~vvmV 116 (175)
T COG2179 49 PELRAWLAELKEAGIKVVVVSNNKES-RVA-----------RAAEKLGVPFIYRAKKPFGRAFRRALKEMNLPPEEVVMV 116 (175)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCHH-HHH-----------hhhhhcCCceeecccCccHHHHHHHHHHcCCChhHEEEE
Confidence 3444444456778998754 452221 111 2233345555 4678999999999999887554 4444
No 410
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=29.27 E-value=97 Score=23.41 Aligned_cols=59 Identities=24% Similarity=0.300 Sum_probs=40.1
Q ss_pred cCccHHHHHHHHHHC---CCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh-HHHHH
Q 025564 47 PYPGAISTLEMLATT---GAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL-THQYL 106 (251)
Q Consensus 47 ~~pGa~e~L~~L~~~---G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~-~~~~L 106 (251)
..|...+.+..+.+. +.++.+.||......+..+.|.+.|..... -.+-+..+. ....+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~-~~l~s~~~~~~~~~~ 120 (166)
T PF04055_consen 58 LHPDFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKLGVDRIR-ISLESLDEESVLRII 120 (166)
T ss_dssp GSCHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHTTCSEEE-EEEBSSSHHHHHHHH
T ss_pred cchhHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhcCccEEe-cccccCCHHHhhhhh
Confidence 347788888888776 999999999886436677888888855431 344444444 34333
No 411
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=29.26 E-value=92 Score=26.23 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=43.2
Q ss_pred EEEEeccccccC---CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 32 AWLLDQFGVLHD---GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 32 ~~l~D~DGvL~~---g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
.-+||+|.-+.- +.-++-+..++-+.+++.+..++++|=.+...+++.++|-+.|+..
T Consensus 113 v~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkG 173 (211)
T COG2344 113 VAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEHAQEVADRLVKAGVKG 173 (211)
T ss_pred EEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHHHHHHHHHHHHcCCce
Confidence 458999976542 2356778888888999999999999976655556777777777653
No 412
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=29.13 E-value=15 Score=30.10 Aligned_cols=79 Identities=9% Similarity=0.086 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhCCCcE-EEccCC-cccc--ccCceee-CchH---HHHHHHH-hCCCeEEecCCCHHHHHHHHHhc--
Q 025564 171 LQDLEKILEICASKKIPM-VVANPD-YVTV--EARALRV-MPGT---LASKFEK-LGGEVRWMGKPDKVVQLLCSLSS-- 239 (251)
Q Consensus 171 ~~~l~~a~~~~~~~g~~l-i~~n~D-~~~~--~~~~~~~-~~G~---i~~~~~~-~g~~~~~~GKP~~~~~~~a~~~l-- 239 (251)
|+.....++.+.++|.++ ++||.+ ..+. .-....+ ..|. +...++. .+.....-.||.+.+++.+.+++
T Consensus 47 ~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~~~~ 126 (174)
T TIGR01685 47 IKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKVDPS 126 (174)
T ss_pred cccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhcccC
Confidence 466677888877788875 777763 2211 1010111 2332 3344443 22222234678888888887776
Q ss_pred CCceEEEEee
Q 025564 240 SVIILFLIFL 249 (251)
Q Consensus 240 ~~~~~~~~~~ 249 (251)
++++-=.+|+
T Consensus 127 gl~p~e~l~V 136 (174)
T TIGR01685 127 VLKPAQILFF 136 (174)
T ss_pred CCCHHHeEEE
Confidence 5665444443
No 413
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.13 E-value=1.2e+02 Score=27.51 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=21.9
Q ss_pred ccCccHHHHHHHHHHCCCeEEEEeCC
Q 025564 46 KPYPGAISTLEMLATTGAKMVVISNS 71 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~v~ivTN~ 71 (251)
+-+|...+++++|+++|+++.+..+-
T Consensus 82 ~~FPdp~~mi~~Lh~~G~kv~l~v~P 107 (340)
T cd06597 82 GRWPNPKGMIDELHEQGVKVLLWQIP 107 (340)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEecC
Confidence 35788999999999999999876553
No 414
>PRK13937 phosphoheptose isomerase; Provisional
Probab=29.10 E-value=75 Score=26.06 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=20.6
Q ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564 47 PYPGAISTLEMLATTGAKMVVISNSSR 73 (251)
Q Consensus 47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~ 73 (251)
--+.+.++++.++++|.+++.+|++..
T Consensus 118 ~t~~~~~~~~~ak~~g~~~I~iT~~~~ 144 (188)
T PRK13937 118 NSPNVLAALEKARELGMKTIGLTGRDG 144 (188)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 456777888888888888888887654
No 415
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=28.93 E-value=69 Score=22.82 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=19.5
Q ss_pred CCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 61 TGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 61 ~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
.+.++++.-+++..+......|++.|+.
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~ 87 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERGYD 87 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcCce
Confidence 4567777777654344566788889986
No 416
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=28.63 E-value=62 Score=30.61 Aligned_cols=51 Identities=25% Similarity=0.330 Sum_probs=35.6
Q ss_pred ccccccCC-CccCc---cHHHHHHHHHHC--CCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 37 QFGVLHDG-KKPYP---GAISTLEMLATT--GAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 37 ~DGvL~~g-~~~~p---Ga~e~L~~L~~~--G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
+.++-..| .+|+- ...+.+..+++. |+++++-||.... .+..++|..+|++
T Consensus 79 ~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l-~e~i~~L~~~gvd 135 (442)
T TIGR01290 79 LSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLML-PEHVDRLVDLGVG 135 (442)
T ss_pred CCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCC-HHHHHHHHHCCCC
Confidence 34444455 55543 467899999887 8999999998754 3455677777765
No 417
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=28.50 E-value=69 Score=21.14 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=15.7
Q ss_pred ccHHHHHHHHHHCCCeEEEEe
Q 025564 49 PGAISTLEMLATTGAKMVVIS 69 (251)
Q Consensus 49 pGa~e~L~~L~~~G~~v~ivT 69 (251)
|.-.+.|+.|.++|.++.|+|
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~ 22 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMT 22 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--
T ss_pred cHHHHHHHHHHHCCCeEEecC
Confidence 456789999999999999998
No 418
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=28.33 E-value=53 Score=26.22 Aligned_cols=35 Identities=23% Similarity=0.182 Sum_probs=25.1
Q ss_pred EEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEE
Q 025564 34 LLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVI 68 (251)
Q Consensus 34 l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~iv 68 (251)
+.|-||||+-... +--|..-.++..++.++|+.++
T Consensus 61 V~DsDgTlI~~~g~l~GGt~lT~~~a~~~~KP~l~i 96 (145)
T PF12694_consen 61 VRDSDGTLIFTRGELTGGTALTVEFARKHGKPCLHI 96 (145)
T ss_dssp HHTSSEEEEEESSS--HHHHHHHHHHHHTT--EEEE
T ss_pred hhhcCeEEEEecCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 4588999986554 4457778899999999999888
No 419
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=28.27 E-value=81 Score=25.39 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=22.7
Q ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCCC
Q 025564 47 PYPGAISTLEMLATTGAKMVVISNSSRR 74 (251)
Q Consensus 47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~ 74 (251)
.-+...++++.++++|.+++.+|++..+
T Consensus 87 ~t~~~i~~~~~ak~~g~~iI~IT~~~~s 114 (179)
T cd05005 87 ETSSVVNAAEKAKKAGAKVVLITSNPDS 114 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 3567788888999999999999987643
No 420
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=28.16 E-value=87 Score=25.37 Aligned_cols=51 Identities=12% Similarity=0.033 Sum_probs=31.6
Q ss_pred ChHHHhccc-CccEEEEeccccccCCCcc----------CccHHHHHHHHHHCCCeEEEEeC
Q 025564 20 GLRHIAETR-RFKAWLLDQFGVLHDGKKP----------YPGAISTLEMLATTGAKMVVISN 70 (251)
Q Consensus 20 ~~~~~~~~~-~~~~~l~D~DGvL~~g~~~----------~pGa~e~L~~L~~~G~~v~ivTN 70 (251)
.+.+.++.. +.+.+++|+=+........ .....++++.|++.+..++|+||
T Consensus 63 ~l~~~l~~~~~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viVsn 124 (169)
T cd00544 63 DLVSALKELDPGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVSN 124 (169)
T ss_pred HHHHHHHhcCCCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 445555311 3567999986654422111 12334488888999999999997
No 421
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.95 E-value=58 Score=22.96 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=19.3
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCC
Q 025564 49 PGAISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 49 pGa~e~L~~L~~~G~~v~ivTN~s 72 (251)
....++++.|+++|+++...|+|.
T Consensus 53 ~~~~~i~~~L~~~G~~~~~~~~~~ 76 (85)
T cd04906 53 EELAELLEDLKSAGYEVVDLSDDE 76 (85)
T ss_pred HHHHHHHHHHHHCCCCeEECCCCH
Confidence 347888999999999988887654
No 422
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=27.89 E-value=67 Score=29.57 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=31.1
Q ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCcc
Q 025564 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSL 91 (251)
Q Consensus 47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~ 91 (251)
.+....+.+..|+++|+.++++|+.. +..-+..+|++..+
T Consensus 29 ~l~~l~~~ia~L~~~G~eVilVSSGA-----iaaG~~~Lg~~~rp 68 (369)
T COG0263 29 KLEELVRQVAALHKAGHEVVLVSSGA-----IAAGRTRLGLPKRP 68 (369)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEccch-----hhhChhhcCCCCCC
Confidence 35667788999999999999999765 44556678887764
No 423
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=27.82 E-value=1.5e+02 Score=26.79 Aligned_cols=79 Identities=10% Similarity=0.045 Sum_probs=47.9
Q ss_pred CCCCCCC-CCCccCCHHHHHHHHHHHHhCCCc---EEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHH
Q 025564 157 EGMGLPS-GDVRPMSLQDLEKILEICASKKIP---MVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVV 231 (251)
Q Consensus 157 ~~~~~~~-g~d~~~~~~~l~~a~~~~~~~g~~---li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~ 231 (251)
.+|+.+. |.+...+-++|...+..+.+.|++ ||..+|+. ..-.|..++..+ ..-|++.- -+-++
T Consensus 136 QNwdISq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Ptp----------~lp~Ile~l~~~~~~iPvvwN-SnmY~ 204 (335)
T COG1313 136 QNWDISQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPTP----------HLPFILEALRYASENIPVVWN-SNMYM 204 (335)
T ss_pred cCccccccCCCeEecHHHHHHHHHHHHHhcCcceeecCCCCCC----------chHHHHHHHHHHhcCCCEEEe-cCCcc
Confidence 4677643 567888999999999877767765 33333333 333466777764 44454332 23333
Q ss_pred HHHHHHhc-CCceEEE
Q 025564 232 QLLCSLSS-SVIILFL 246 (251)
Q Consensus 232 ~~~a~~~l-~~~~~~~ 246 (251)
=..+++.| |+-+|||
T Consensus 205 s~E~l~lL~gvVDiyL 220 (335)
T COG1313 205 SEETLKLLDGVVDIYL 220 (335)
T ss_pred CHHHHHHhhccceeee
Confidence 34555555 7888886
No 424
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=27.79 E-value=1.1e+02 Score=22.92 Aligned_cols=34 Identities=9% Similarity=0.231 Sum_probs=24.0
Q ss_pred HHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 52 ISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 52 ~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
..+-++|+++|..+.++|+.. +.+..+..|++-.
T Consensus 16 lala~~L~~rGh~V~~~~~~~-----~~~~v~~~Gl~~~ 49 (139)
T PF03033_consen 16 LALARALRRRGHEVRLATPPD-----FRERVEAAGLEFV 49 (139)
T ss_dssp HHHHHHHHHTT-EEEEEETGG-----GHHHHHHTT-EEE
T ss_pred HHHHHHHhccCCeEEEeeccc-----ceecccccCceEE
Confidence 356678999999999999633 5566688898743
No 425
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=27.79 E-value=1.4e+02 Score=25.66 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=11.1
Q ss_pred ccHHHHHHHHHHCCCeEEEEeC
Q 025564 49 PGAISTLEMLATTGAKMVVISN 70 (251)
Q Consensus 49 pGa~e~L~~L~~~G~~v~ivTN 70 (251)
+...++++.+++.|.+.+++-|
T Consensus 116 ee~~~~~~~~~~~g~~~i~~i~ 137 (242)
T cd04724 116 EEAEEFREAAKEYGLDLIFLVA 137 (242)
T ss_pred HHHHHHHHHHHHcCCcEEEEeC
Confidence 4444555555555555444333
No 426
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=27.60 E-value=1.2e+02 Score=27.38 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=31.9
Q ss_pred ccEEEEecccc-----ccCCCccCccHHHHHHHHHHCCCeEEEEeCC
Q 025564 30 FKAWLLDQFGV-----LHDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (251)
Q Consensus 30 ~~~~l~D~DGv-----L~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~ 71 (251)
++++.+|+|-. ..-..+-+|...++++.|+++|+++.+..+.
T Consensus 40 ~d~i~lD~~~~~~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P 86 (339)
T cd06604 40 CDAIYLDIDYMDGYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDP 86 (339)
T ss_pred cceEEECchhhCCCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeC
Confidence 57888886632 2223457899999999999999999876653
No 427
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=27.53 E-value=1.6e+02 Score=23.35 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=36.3
Q ss_pred eccccccCCCccC--c--cHHHHHHHHHHC-----CCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 36 DQFGVLHDGKKPY--P--GAISTLEMLATT-----GAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 36 D~DGvL~~g~~~~--p--Ga~e~L~~L~~~-----G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
+++.+.+.|..+. + ...++++.+++. +..+.+.||.....++..+.|++.|+.
T Consensus 51 ~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~ 112 (216)
T smart00729 51 LVGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEALKEAGVN 112 (216)
T ss_pred ceeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCC
Confidence 4566666555433 3 467889998887 456778888554445677888888886
No 428
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=27.25 E-value=3e+02 Score=25.69 Aligned_cols=79 Identities=18% Similarity=0.304 Sum_probs=51.1
Q ss_pred hccCChHHHhcccCccEEEEeccccccCCC-------ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 16 QTLNGLRHIAETRRFKAWLLDQFGVLHDGK-------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~l~D~DGvL~~g~-------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
.+++.+++.+. +.+++ +|+|. ..-.|..++.+.+.+.. .+-++-... -...++++|+.
T Consensus 295 ~Ti~~~~~~i~--~akti-------~wNGP~GvfE~~~F~~GT~~l~~aia~~~-a~sivGGGd-----t~aa~~~~g~~ 359 (389)
T PRK00073 295 KTIELFAEIIK--DAKTI-------VWNGPMGVFEFENFAKGTKAVAKAIAEST-AFSIIGGGD-----TAAAVEKLGLA 359 (389)
T ss_pred HHHHHHHHHHh--hCCEE-------EEECCCCccccccchHHHHHHHHHHHhcC-CeEEEcCCH-----HHHHHHHcCCC
Confidence 34455556666 55555 55543 23368888999888755 233333322 22456678999
Q ss_pred CccccceeechhhHHHHHhccC
Q 025564 89 PSLFAGAITSGELTHQYLLRRD 110 (251)
Q Consensus 89 ~~~~~~Iits~~~~~~~L~~~~ 110 (251)
.. +.+|-|++-+.-+||.-..
T Consensus 360 ~~-~shiSTGGGA~Le~LeGk~ 380 (389)
T PRK00073 360 DK-FSHISTGGGASLEFLEGKE 380 (389)
T ss_pred CC-ccEEcCCcHHHHHHHcCCC
Confidence 88 7999999999999987443
No 429
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=27.19 E-value=1.4e+02 Score=27.14 Aligned_cols=68 Identities=12% Similarity=0.165 Sum_probs=44.0
Q ss_pred hHHHhcccCccEEEEeccccc------cCCC-ccCccHHHHHHHHHHCCCeEEEEeC---CC-CCchhHHHHhHhCCCCC
Q 025564 21 LRHIAETRRFKAWLLDQFGVL------HDGK-KPYPGAISTLEMLATTGAKMVVISN---SS-RRASTTIDKLKSLGFDP 89 (251)
Q Consensus 21 ~~~~~~~~~~~~~l~D~DGvL------~~g~-~~~pGa~e~L~~L~~~G~~v~ivTN---~s-~~~~~~~~~L~~~Gl~~ 89 (251)
++.+.+ ..++.+-+.+||.- .++. ..+..+.+.++.|++.|+++.+.+- .. ..-.++.+.+.++|++.
T Consensus 107 ~~~L~~-~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~~~N~~~i~~~~~~~~~lgv~~ 185 (378)
T PRK05301 107 LAALKD-AGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGADR 185 (378)
T ss_pred HHHHHH-cCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEeecCCHHHHHHHHHHHHHcCCCE
Confidence 334434 24678999999962 2333 3677888899999999998776542 22 11234556667788763
No 430
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=27.13 E-value=82 Score=28.99 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=17.9
Q ss_pred eccccccCCC---ccCccHH-HHHHHHHHCCCeEEEE
Q 025564 36 DQFGVLHDGK---KPYPGAI-STLEMLATTGAKMVVI 68 (251)
Q Consensus 36 D~DGvL~~g~---~~~pGa~-e~L~~L~~~G~~v~iv 68 (251)
++|||++... +++.+-. .+=+.|++.|+|+..+
T Consensus 313 ~~DGVI~~~~kfC~~~~~e~~~lk~~l~e~GIP~L~i 349 (377)
T TIGR03190 313 NVQGAIFLQQKFCDPHEGDYPDLKRHLEANGIPTLFL 349 (377)
T ss_pred CCCEEEEecccCCCcchhhhHHHHHHHHHCCCCEEEE
Confidence 4567766533 3333322 2235566777777666
No 431
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=27.04 E-value=1.6e+02 Score=22.21 Aligned_cols=13 Identities=15% Similarity=0.059 Sum_probs=6.2
Q ss_pred ccHHHHHHHHHHC
Q 025564 49 PGAISTLEMLATT 61 (251)
Q Consensus 49 pGa~e~L~~L~~~ 61 (251)
+.+.++++.|+++
T Consensus 65 ~~~~~~~~~L~~~ 77 (122)
T cd02071 65 TLFPEVIELLREL 77 (122)
T ss_pred HHHHHHHHHHHhc
Confidence 3444444445444
No 432
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=26.80 E-value=1.4e+02 Score=27.85 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=37.3
Q ss_pred CccEEEEeccccccC-----CCccCccHHHHHHHHHHCCCeEEEEeCCC-CCch---hHHHHhHhCCCC
Q 025564 29 RFKAWLLDQFGVLHD-----GKKPYPGAISTLEMLATTGAKMVVISNSS-RRAS---TTIDKLKSLGFD 88 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~-----g~~~~pGa~e~L~~L~~~G~~v~ivTN~s-~~~~---~~~~~L~~~Gl~ 88 (251)
.++++.+|.+-.--. ..+.+|+..++++.|+++|+++++-.+-. .... ..-+.+.+.|+-
T Consensus 58 P~d~~~iD~~~~~~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~~~~~ 126 (441)
T PF01055_consen 58 PLDVIWIDDDYQDGYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKEKGYL 126 (441)
T ss_dssp -EEEEEE-GGGSBTTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHHTT-B
T ss_pred CccceeccccccccccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhhcCce
Confidence 358899998853322 23578999999999999999988766543 1111 144555666664
No 433
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=26.62 E-value=1.3e+02 Score=29.13 Aligned_cols=101 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred ccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHHHH
Q 025564 27 TRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYL 106 (251)
Q Consensus 27 ~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L 106 (251)
...++.+++.+.- .+++.++.+.|.+.|+.+ +.| ..-.+.|++.|++......+-...+..-.-+
T Consensus 1 ~~~~~~aLISVsD--------K~~iv~lAk~L~~lGfeI-~AT------~GTak~L~e~GI~v~~V~k~TgfpEil~GRV 65 (513)
T PRK00881 1 RRMIKRALISVSD--------KTGIVEFAKALVELGVEI-LST------GGTAKLLAEAGIPVTEVSDVTGFPEILDGRV 65 (513)
T ss_pred CCCcCEEEEEEeC--------cccHHHHHHHHHHCCCEE-EEc------chHHHHHHHCCCeeEEeecccCCchhcCCcc
Q ss_pred hccCchhhh-hcCCeEEEeccCCcccccccCCCceecCCCCCccEEEE
Q 025564 107 LRRDDAWFA-ALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILA 153 (251)
Q Consensus 107 ~~~~~~~~~-~~g~~~~~~g~~~~~~~~l~~~g~~~~~~~~~~~~Vvv 153 (251)
+..++.-+. +++++ ..+....++++.|+ ...|.||+
T Consensus 66 KTLHP~IhgGiLa~r-----~~~~h~~~l~~~~i------~~IDlVvv 102 (513)
T PRK00881 66 KTLHPKIHGGILARR-----DNPEHVAALEEHGI------EPIDLVVV 102 (513)
T ss_pred ccCCchhhhhhccCC-----CCHHHHHHHHHcCC------CceeEEEE
No 434
>PRK04531 acetylglutamate kinase; Provisional
Probab=26.49 E-value=1.6e+02 Score=27.57 Aligned_cols=57 Identities=14% Similarity=0.192 Sum_probs=46.3
Q ss_pred CccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
+++.+++=+.|-+... ..+....-|..|++.|.+++++=... .++.+.|++.|++..
T Consensus 35 ~~~~~VIKiGG~~l~~--~~~~l~~dla~L~~~G~~~VlVHGgg---pqI~~~l~~~gie~~ 91 (398)
T PRK04531 35 AERFAVIKVGGAVLRD--DLEALASSLSFLQEVGLTPIVVHGAG---PQLDAELDAAGIEKE 91 (398)
T ss_pred CCcEEEEEEChHHhhc--CHHHHHHHHHHHHHCCCcEEEEECCC---HHHHHHHHHcCCCcE
Confidence 4678999999988763 24788888999999999999998765 246688899999865
No 435
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=26.47 E-value=2.6e+02 Score=24.83 Aligned_cols=11 Identities=36% Similarity=0.522 Sum_probs=7.1
Q ss_pred CCCeEEecCCC
Q 025564 218 GGEVRWMGKPD 228 (251)
Q Consensus 218 g~~~~~~GKP~ 228 (251)
|.+.+++||++
T Consensus 113 Gy~iiiiG~~~ 123 (280)
T TIGR00216 113 GYHVILIGKKN 123 (280)
T ss_pred CCEEEEEeCCC
Confidence 55667777764
No 436
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=26.45 E-value=86 Score=26.42 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=31.5
Q ss_pred CChHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeC
Q 025564 19 NGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN 70 (251)
Q Consensus 19 ~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN 70 (251)
..+++..+.-+++++++++|+-=. +........+.|+.+++.|+|++-.-+
T Consensus 36 ~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el~~~i~~~~~~~kpVia~~~ 86 (222)
T cd07018 36 EALEKAAEDDRIKGIVLDLDGLSG-GLAKLEELRQALERFRASGKPVIAYAD 86 (222)
T ss_pred HHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHHHHHHHHHHHhCCeEEEEeC
Confidence 344445442347899999988432 222334556677788888888765554
No 437
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=26.37 E-value=4.6e+02 Score=23.25 Aligned_cols=41 Identities=20% Similarity=0.379 Sum_probs=29.8
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 48 ~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
-|||..+-+.|++.|+++.++|.... ...+.+.++..+...
T Consensus 62 P~GA~aLa~aL~~lG~~~~ivtd~~~-~~~~~~~~~~~~~~~ 102 (291)
T PF14336_consen 62 PPGAAALARALQALGKEVVIVTDERC-APVVKAAVRAAGLQG 102 (291)
T ss_pred hHHHHHHHHHHHHcCCeEEEEECHHH-HHHHHHHHHHHhhCc
Confidence 57999999999999999999996542 223445555566653
No 438
>PRK07308 flavodoxin; Validated
Probab=25.95 E-value=2.9e+02 Score=21.21 Aligned_cols=58 Identities=12% Similarity=0.049 Sum_probs=35.1
Q ss_pred CccEEEEeccccccCCCccC-ccHHHHHHHHHHC---CCeEEEEeCCCCCc-------hhHHHHhHhCCCCC
Q 025564 29 RFKAWLLDQFGVLHDGKKPY-PGAISTLEMLATT---GAKMVVISNSSRRA-------STTIDKLKSLGFDP 89 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~~~~-pGa~e~L~~L~~~---G~~v~ivTN~s~~~-------~~~~~~L~~~Gl~~ 89 (251)
++++++| |+-..+...+ +.+.++++.|+.. |+++++.-+..+.. ..+.++|+++|...
T Consensus 48 ~~d~vi~---g~~t~g~G~~p~~~~~fl~~l~~~~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~ 116 (146)
T PRK07308 48 DADIAIV---ATYTYGDGELPDEIVDFYEDLADLDLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATK 116 (146)
T ss_pred cCCEEEE---EeCccCCCCCCHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 6788887 6666664444 4789999988654 67776666543211 23444555555543
No 439
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=25.81 E-value=1.4e+02 Score=23.56 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=22.2
Q ss_pred HHHHHHH-HHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 52 ISTLEML-ATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 52 ~e~L~~L-~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
.|+|... .+.| .++++||- .++.+++++.|++.-
T Consensus 87 De~i~~~a~~~~-~~iVaTnD----~eLk~rlr~~GIPvi 121 (136)
T COG1412 87 DECLLEAALKHG-RYIVATND----KELKRRLRENGIPVI 121 (136)
T ss_pred HHHHHHHHHHcC-CEEEEeCC----HHHHHHHHHcCCCEE
Confidence 5554444 4444 78889984 346778877788753
No 440
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=25.72 E-value=1.2e+02 Score=25.37 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=34.5
Q ss_pred cCCCccCccHHHHHHHHHHC-CCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 42 HDGKKPYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 42 ~~g~~~~pGa~e~L~~L~~~-G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
--|..+++.+..+++.|.+. |.++++++........+...-+++|++..
T Consensus 3 KiGGsl~~~~~~~~~~l~~~~~~~v~iV~GGG~~A~~~r~~~~~~g~~~~ 52 (203)
T cd04240 3 KIGGSLIREAVRLLRWLKTLSGGGVVIVPGGGPFADVVRRYQERKGLSDA 52 (203)
T ss_pred EEcccccccHHHHHHHHHhccCCCEEEEcCCcHHHHHHHHHHHHcCCChH
Confidence 34555666678888888665 89999999988654445454467888754
No 441
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=25.57 E-value=1.4e+02 Score=24.56 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=24.0
Q ss_pred HHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 54 TLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 54 ~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
+...|...|+++++.|.+ ..+.+.|.++|++..
T Consensus 108 l~~~L~~~g~~w~vfTaT----~~lr~~~~rlgl~~~ 140 (179)
T PF12261_consen 108 LAQLLAQQGFEWVVFTAT----RQLRNLFRRLGLPPT 140 (179)
T ss_pred HHHHHHHCCCCEEEEeCC----HHHHHHHHHcCCCce
Confidence 445677888888888863 346677888888754
No 442
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=25.56 E-value=1e+02 Score=23.20 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=20.0
Q ss_pred ccHHHHHHHHHHCCC-eEEEEeCCCCC
Q 025564 49 PGAISTLEMLATTGA-KMVVISNSSRR 74 (251)
Q Consensus 49 pGa~e~L~~L~~~G~-~v~ivTN~s~~ 74 (251)
+.+.++++.+++.+. +..+.||....
T Consensus 70 ~~l~~i~~~~k~~~~~~~~~~tng~~~ 96 (139)
T PF13353_consen 70 DELLEILKYIKEKFPKKIIILTNGYTL 96 (139)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEETT--H
T ss_pred hHHHHHHHHHHHhCCCCeEEEECCCch
Confidence 678889999999988 89999998753
No 443
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=25.35 E-value=4.9e+02 Score=23.25 Aligned_cols=29 Identities=10% Similarity=0.104 Sum_probs=18.8
Q ss_pred ccCCHHHHHHHHHHHHhCCCc-EEEccCCc
Q 025564 167 RPMSLQDLEKILEICASKKIP-MVVANPDY 195 (251)
Q Consensus 167 ~~~~~~~l~~a~~~~~~~g~~-li~~n~D~ 195 (251)
.+.+.+.+.+.++.+.+.|+. ++.-..|.
T Consensus 240 vNd~~~~l~~l~~~l~~~gv~pyyl~~~~p 269 (321)
T TIGR03822 240 VNDDPETLAALMRAFVECRIKPYYLHHLDL 269 (321)
T ss_pred CCCCHHHHHHHHHHHHhcCCeeEEEEecCC
Confidence 455677888888877777875 44444443
No 444
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=25.16 E-value=2.4e+02 Score=25.51 Aligned_cols=43 Identities=26% Similarity=0.240 Sum_probs=26.0
Q ss_pred CCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHh-CCCcEEEccCCcc
Q 025564 145 VEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICAS-KKIPMVVANPDYV 196 (251)
Q Consensus 145 ~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~-~g~~li~~n~D~~ 196 (251)
.+++|+|++-| .|+..+...+...++...+ +|+++++.+|...
T Consensus 146 i~~ad~il~~G---------~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t 189 (386)
T cd02768 146 IEEADAVLLIG---------SNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDT 189 (386)
T ss_pred HhhCCEEEEEc---------CCcchhchHHHHHHHHHHHcCCCeEEEECCCcc
Confidence 46788988853 3444343334444444434 4999999988553
No 445
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=24.97 E-value=69 Score=29.98 Aligned_cols=37 Identities=14% Similarity=-0.024 Sum_probs=26.8
Q ss_pred CccEEEEeccccccCCCccCccHHH---HHHHHHHCCCeE
Q 025564 29 RFKAWLLDQFGVLHDGKKPYPGAIS---TLEMLATTGAKM 65 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g~~~~pGa~e---~L~~L~~~G~~v 65 (251)
++.+|-||||+||.+-..+-..... ....+.+.|++-
T Consensus 26 ~i~~~GfdmDyTL~~Y~~~~~esLay~~~~~~l~~~Gyp~ 65 (424)
T KOG2469|consen 26 NIGIVGFDMDYTLARYNLPEMESLAYDLAQFLLKDKGYPN 65 (424)
T ss_pred cCcEEeeccccchhhhcccchHHHHHHHHHHHHHhcCChh
Confidence 8999999999999886654333222 355677888884
No 446
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=24.53 E-value=1.8e+02 Score=26.36 Aligned_cols=71 Identities=25% Similarity=0.269 Sum_probs=45.5
Q ss_pred EEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCCCccccceeechhhHHHHHhccC
Q 025564 34 LLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRD 110 (251)
Q Consensus 34 l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~~~~ 110 (251)
.+|+.||=++|.+.++=..-+---+.+.|++++.-.|.+. +...-.+.|+.+|++... +-+.+...|.+.+
T Consensus 75 ~iDi~gtggdg~~t~nis~~~a~vlA~~G~~V~kHG~~~~~s~~GsadvLe~lGi~~~~------~~~~~~~~l~~~g 146 (339)
T PRK00188 75 AVDIVGTGGDGANTFNISTAAAFVAAAAGVKVAKHGNRSVSSKSGSADVLEALGVNLDL------SPEQVARCLEEVG 146 (339)
T ss_pred CCcccCCCCCCCCccchHHHHHHHHHhCCCEEEEECCCCCCCCcCHHHHHHHcCCCCCC------CHHHHHHHHHHcC
Confidence 6888898888876554322233345778999999998663 333345789999998641 2333455555443
No 447
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=24.48 E-value=1.2e+02 Score=22.61 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=22.0
Q ss_pred cCCCccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564 42 HDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 42 ~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s 72 (251)
.+..+.+-|.++.++.++...-+.+++..|.
T Consensus 15 vkTGkvilG~k~tiK~lk~gkaKliiiAsN~ 45 (100)
T COG1911 15 VKTGKVILGSKRTIKSLKLGKAKLIIIASNC 45 (100)
T ss_pred HhcCCEEEehHHHHHHHHcCCCcEEEEecCC
Confidence 3455677899999999987766655555443
No 448
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=24.30 E-value=1.9e+02 Score=20.02 Aligned_cols=67 Identities=22% Similarity=0.214 Sum_probs=36.4
Q ss_pred ChHHHhcccC-ccEEEEecccc-ccCCC-ccCccHH--------HHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 20 GLRHIAETRR-FKAWLLDQFGV-LHDGK-KPYPGAI--------STLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 20 ~~~~~~~~~~-~~~~l~D~DGv-L~~g~-~~~pGa~--------e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
.+.++++ + -+.+++|+--. -+... ..+||+. +.+..+ ..+.++++..++..........|+++|+.
T Consensus 6 ~~~~~~~--~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~~~~~-~~~~~ivv~c~~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 6 ELAELLA--AGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDDWLGDL-DRDRPVVVYCYHGNSSAQLAQALREAGFT 82 (96)
T ss_pred HHHHHHh--cCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHHHHhhc-CCCCCEEEEeCCCChHHHHHHHHHHcCCc
Confidence 3444444 3 45788888754 22220 2344432 223332 24567777777554444566778888876
Q ss_pred C
Q 025564 89 P 89 (251)
Q Consensus 89 ~ 89 (251)
.
T Consensus 83 ~ 83 (96)
T cd01444 83 D 83 (96)
T ss_pred e
Confidence 4
No 449
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=24.30 E-value=1.4e+02 Score=26.04 Aligned_cols=51 Identities=20% Similarity=0.276 Sum_probs=35.5
Q ss_pred EeccccccCCC-ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCC
Q 025564 35 LDQFGVLHDGK-KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF 87 (251)
Q Consensus 35 ~D~DGvL~~g~-~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl 87 (251)
||-|=+++.+- ...||=..+=+.|++.|+|++++|..+.... .+.|+.-|+
T Consensus 59 ~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~--~d~l~~~g~ 110 (277)
T PRK00994 59 WKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKV--KDAMEEQGL 110 (277)
T ss_pred hCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccch--HHHHHhcCC
Confidence 34455555554 4578888888888999999999998875432 266766665
No 450
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=23.94 E-value=2.1e+02 Score=21.05 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=33.7
Q ss_pred HHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCC
Q 025564 23 HIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRR 74 (251)
Q Consensus 23 ~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~ 74 (251)
+.++ +-+.++.++||.- +=+|+.--+-.....|+|+++++...+.
T Consensus 57 ~~i~--~~D~via~l~~~~-----~d~Gt~~ElG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 57 EGIR--ECDIVIANLDGFR-----PDSGTAFELGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp HHHH--HSSEEEEEECSSS-------HHHHHHHHHHHHTTSEEEEEECCCCT
T ss_pred HHHH--HCCEEEEECCCCC-----CCCcHHHHHHHHHHCCCEEEEEEcCCcc
Confidence 4445 6789999988844 5567777778888999999999987754
No 451
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=23.68 E-value=2.4e+02 Score=20.36 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=17.0
Q ss_pred CCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 61 TGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 61 ~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
.+.++.+.+++....+.+.+.|++.+..
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~ 54 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGIK 54 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCCc
Confidence 3567777776654445566777764443
No 452
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=23.57 E-value=2.2e+02 Score=18.66 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=19.2
Q ss_pred HHHHHHHHHHCCCeEEEEeCCC
Q 025564 51 AISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 51 a~e~L~~L~~~G~~v~ivTN~s 72 (251)
..+.+++++++|++.+.+|+-.
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCC
Confidence 6788999999999999999855
No 453
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=23.45 E-value=1.7e+02 Score=28.37 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=41.1
Q ss_pred EEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCCCc
Q 025564 34 LLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPS 90 (251)
Q Consensus 34 l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~~~ 90 (251)
.+|+.||=++|.+.++=..-+---+...|.+++.-.|.+. +.....+.|+.+|++..
T Consensus 273 ~iD~~gtGgdg~~t~nist~aa~v~A~~Gv~V~kHG~r~~ss~~GsadvlealGi~~~ 330 (531)
T PRK09522 273 FADIVGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLD 330 (531)
T ss_pred cccccCCCCCCCCCcccHHHHHHHHHhCCCcEEEeCCCCCCCCccHHHHHHHcCCCCC
Confidence 6899999999887655322222235678999999999763 33445788999999864
No 454
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=23.30 E-value=1.6e+02 Score=26.27 Aligned_cols=70 Identities=16% Similarity=0.011 Sum_probs=43.1
Q ss_pred HHHHHHHHH--HhCCCcEEEccCC---ccccccCceeeCchHHHHHHHHhCCCe-EEecCCCHHHHHHHHHhcCCce
Q 025564 173 DLEKILEIC--ASKKIPMVVANPD---YVTVEARALRVMPGTLASKFEKLGGEV-RWMGKPDKVVQLLCSLSSSVII 243 (251)
Q Consensus 173 ~l~~a~~~~--~~~g~~li~~n~D---~~~~~~~~~~~~~G~i~~~~~~~g~~~-~~~GKP~~~~~~~a~~~l~~~~ 243 (251)
.+.+|.+.+ ...+..+|+|--= .-.+..+| -+|.-+++++++..|+++ ++..+++..++..+.+.++...
T Consensus 27 ~~~~Aa~~L~~~~~~~VlI~TGFpv~~~~~~ETDG-P~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~~~~~~~~~ 102 (291)
T PF14336_consen 27 YLLRAALSLALSHAKSVLIVTGFPVPPAPPPETDG-PPGAAALARALQALGKEVVIVTDERCAPVVKAAVRAAGLQG 102 (291)
T ss_pred HHHHHHHHhcccCCCcEEEEeCCCCCCCCCCCCCC-hHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHHHHHhhCc
Confidence 456666654 2334455665211 11111122 244456888898888886 7889999999999988776543
No 455
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=23.16 E-value=1e+02 Score=25.17 Aligned_cols=76 Identities=14% Similarity=0.120 Sum_probs=0.0
Q ss_pred cccccCCC-chhccCChHHHhcccCccEEEEe-ccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhH
Q 025564 6 SVQSNDPH-LFQTLNGLRHIAETRRFKAWLLD-QFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK 83 (251)
Q Consensus 6 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~D-~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~ 83 (251)
|+++.|+. +....+.+.+. ..+.+=|| +||........-+...+.++......+.+.+.++.. ..+.+.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~----g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~---~~~~~~~~ 76 (210)
T TIGR01163 4 SILSADFARLGEEVKAVEEA----GADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENP---DRYIEDFA 76 (210)
T ss_pred hhhcCCHHHHHHHHHHHHHc----CCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCH---HHHHHHHH
Q ss_pred hCCCC
Q 025564 84 SLGFD 88 (251)
Q Consensus 84 ~~Gl~ 88 (251)
+.|.+
T Consensus 77 ~~gad 81 (210)
T TIGR01163 77 EAGAD 81 (210)
T ss_pred HcCCC
No 456
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=23.08 E-value=1.1e+02 Score=23.05 Aligned_cols=59 Identities=12% Similarity=0.123 Sum_probs=34.6
Q ss_pred cEEEEeccccccCCCccCc--cHHHHHHHHHHC--CCeEEEEeCCCCCch---hHHHHhHhCCCCC
Q 025564 31 KAWLLDQFGVLHDGKKPYP--GAISTLEMLATT--GAKMVVISNSSRRAS---TTIDKLKSLGFDP 89 (251)
Q Consensus 31 ~~~l~D~DGvL~~g~~~~p--Ga~e~L~~L~~~--G~~v~ivTN~s~~~~---~~~~~L~~~Gl~~ 89 (251)
-.+-+|-||.+|-..+.+. .....|+.+.+. ..++.+--....+.+ .+.+.+++.|+..
T Consensus 50 ~~i~I~~~g~~~~~~~~v~~~~L~~~l~~~~~~~~~~~v~I~aD~~~~~~~vv~v~d~~~~aG~~~ 115 (122)
T TIGR02803 50 VYVSVKADLSLFVGNDPVARETLGTALDALTEGDKDTTIFFRADKTVDYGDLMKVMNLLRQAGYLK 115 (122)
T ss_pred EEEEEeCCCCEEECCccCCHHHHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCE
Confidence 3677889999887666652 333444444332 344565555543333 4556777788863
No 457
>PRK15452 putative protease; Provisional
Probab=23.07 E-value=2.9e+02 Score=26.22 Aligned_cols=77 Identities=12% Similarity=-0.056 Sum_probs=47.7
Q ss_pred CccEEEEeccccccCC---CccCccHHHHHHHHHHCCCeEEEEeCCCCCchh---HH---HHhHhCCCCCccccceeech
Q 025564 29 RFKAWLLDQFGVLHDG---KKPYPGAISTLEMLATTGAKMVVISNSSRRAST---TI---DKLKSLGFDPSLFAGAITSG 99 (251)
Q Consensus 29 ~~~~~l~D~DGvL~~g---~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~---~~---~~L~~~Gl~~~~~~~Iits~ 99 (251)
..|+|.+=.+.==++. .--.+...++++..+++|+++.+.+|.-....+ +. +.+..+|+ +.|+-++
T Consensus 23 GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gv-----DgvIV~d 97 (443)
T PRK15452 23 GADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKP-----DALIMSD 97 (443)
T ss_pred CCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCC-----CEEEEcC
Confidence 5666666444322221 112356888999999999999999997532222 22 33334443 5677777
Q ss_pred hhHHHHHhccC
Q 025564 100 ELTHQYLLRRD 110 (251)
Q Consensus 100 ~~~~~~L~~~~ 110 (251)
.....++++..
T Consensus 98 ~G~l~~~ke~~ 108 (443)
T PRK15452 98 PGLIMMVREHF 108 (443)
T ss_pred HHHHHHHHHhC
Confidence 77778887754
No 458
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=23.07 E-value=2.3e+02 Score=24.20 Aligned_cols=48 Identities=10% Similarity=0.142 Sum_probs=30.2
Q ss_pred hHHHHhHhCCCCCccccceeechhhHHHHHhccCchhhhhcCCeEEEec
Q 025564 77 TTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMT 125 (251)
Q Consensus 77 ~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~~~~~~~~~~~g~~~~~~g 125 (251)
++.+.|...-++.. .+-++.+...-..|.++..++.+.+-++.||...
T Consensus 22 eii~~ln~a~~~~~-vevvi~pP~~Yl~~ak~~l~~~i~v~aQn~~~~k 69 (247)
T KOG1643|consen 22 EIIKTLNAAKLPAN-VEVVIAPPAPYLDYAKSKLKPDIGVAAQNCYKVK 69 (247)
T ss_pred HHHHHhhhccCCCC-CcEEEeCChhHHHHHHHhCCccceeecceeeecc
Confidence 56667777677766 3777887777777777665544334345666543
No 459
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=23.03 E-value=1.7e+02 Score=24.80 Aligned_cols=47 Identities=11% Similarity=0.055 Sum_probs=28.8
Q ss_pred CChHHHhcccCccEEEEeccccccCCCccC-----ccHHHHHHHHHHCCCeEEE
Q 025564 19 NGLRHIAETRRFKAWLLDQFGVLHDGKKPY-----PGAISTLEMLATTGAKMVV 67 (251)
Q Consensus 19 ~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~-----pGa~e~L~~L~~~G~~v~i 67 (251)
+.+++++. ..+.+.+|+|+.--.....+ ..+.+.++.|++.|.++.+
T Consensus 115 ~~~~~ll~--~~d~v~islk~~~~e~~~~~~g~~~~~~l~~i~~l~~~g~~v~i 166 (246)
T PRK11145 115 PVIDELLD--VTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFARYLAKRNQKTWI 166 (246)
T ss_pred HHHHHHHH--hCCEEEECCCcCChhhcccccCCChHHHHHHHHHHHhCCCcEEE
Confidence 55566676 67889999999742211112 2345556677777766544
No 460
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=22.90 E-value=1.1e+02 Score=25.17 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=20.0
Q ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564 47 PYPGAISTLEMLATTGAKMVVISNSSR 73 (251)
Q Consensus 47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~ 73 (251)
--+.+.++++.++++|.+++.+|++..
T Consensus 123 ~t~~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 123 NSGNIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 456677777888888888888887654
No 461
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=22.82 E-value=2.2e+02 Score=22.00 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=36.4
Q ss_pred cccCccE-EEEeccccccCC--------CccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564 26 ETRRFKA-WLLDQFGVLHDG--------KKPYPGAISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 26 ~~~~~~~-~l~D~DGvL~~g--------~~~~pGa~e~L~~L~~~G~~v~ivTN~s 72 (251)
.-|.++. ++|=+||+-.-. ...+|...++++.++++|.++++++-+.
T Consensus 30 ~smg~dV~iF~t~dG~~l~~K~~~ekik~~~~~~l~~~~~~a~e~GVk~yvCe~s~ 85 (120)
T COG2044 30 ASMGYDVTIFFTMDGVTLVKKKVAEKIKHPNFPPLEELIKQAIEAGVKIYVCEQSL 85 (120)
T ss_pred HhCCCceEEEEEeccceeeeecchhhhcCCCCCCHHHHHHHHHHcCCEEEEEcchh
Confidence 3357884 788999986532 1346889999999999999999998654
No 462
>PRK13938 phosphoheptose isomerase; Provisional
Probab=22.77 E-value=1.2e+02 Score=25.37 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=22.7
Q ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCCC
Q 025564 47 PYPGAISTLEMLATTGAKMVVISNSSRR 74 (251)
Q Consensus 47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~ 74 (251)
--+...++++.++++|.+++.+|+++.+
T Consensus 125 ~t~~vi~a~~~Ak~~G~~vI~iT~~~~s 152 (196)
T PRK13938 125 NSMSVLRAAKTARELGVTVVAMTGESGG 152 (196)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 4577888888889999999999987643
No 463
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=22.60 E-value=4.4e+02 Score=24.85 Aligned_cols=79 Identities=16% Similarity=0.311 Sum_probs=49.9
Q ss_pred hccCChHHHhcccCccEEEEeccccccCCC-------ccCccHHHHHHHHHH---CCCeEEEEeCCCCCchhHHHHhHhC
Q 025564 16 QTLNGLRHIAETRRFKAWLLDQFGVLHDGK-------KPYPGAISTLEMLAT---TGAKMVVISNSSRRASTTIDKLKSL 85 (251)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~l~D~DGvL~~g~-------~~~pGa~e~L~~L~~---~G~~v~ivTN~s~~~~~~~~~L~~~ 85 (251)
.+++.+.+++. +.++ ++|+|. ..-.|..++.+.+.+ .|. +-|+-... ....++++
T Consensus 319 ~Ti~~~~~~i~--~akT-------V~wNGP~GvFE~~~F~~GT~~i~~aia~~t~~~a-~sivGGGd-----t~aAi~~~ 383 (417)
T PTZ00005 319 KSIEEFAEAIL--RAKT-------IVWNGPQGVFEMPNFAKGSIAMLDAVVKATEKGA-ITIVGGGD-----TASLVEKT 383 (417)
T ss_pred HHHHHHHHHHh--hCCE-------EEEECCCccccCCcchHHHHHHHHHHHHhccCCC-EEEEeCcH-----HHHHHHHc
Confidence 34455556666 5554 456653 233688888888766 332 34444322 22456679
Q ss_pred CCCCccccceeechhhHHHHHhccC
Q 025564 86 GFDPSLFAGAITSGELTHQYLLRRD 110 (251)
Q Consensus 86 Gl~~~~~~~Iits~~~~~~~L~~~~ 110 (251)
|+... |.+|-|++-+.-+||.-..
T Consensus 384 g~~~~-~shvSTGGGA~Le~LeGk~ 407 (417)
T PTZ00005 384 GAANK-VSHVSTGGGASLELLEGKE 407 (417)
T ss_pred CCCCC-CceEcCchHHHHHHHcCCC
Confidence 99987 7999999999999987443
No 464
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=22.49 E-value=3.7e+02 Score=20.88 Aligned_cols=16 Identities=6% Similarity=-0.222 Sum_probs=9.3
Q ss_pred ccCccHHHHHHHHHHC
Q 025564 46 KPYPGAISTLEMLATT 61 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~ 61 (251)
...+.+.++++.|++.
T Consensus 66 ~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 66 HGEIDCRGLREKCIEA 81 (137)
T ss_pred cCHHHHHHHHHHHHhc
Confidence 3445556666666666
No 465
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=22.48 E-value=1.5e+02 Score=25.81 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=9.8
Q ss_pred cHHHHHHHHHHCCCeEEEE
Q 025564 50 GAISTLEMLATTGAKMVVI 68 (251)
Q Consensus 50 Ga~e~L~~L~~~G~~v~iv 68 (251)
|..++++.+++.|..=+++
T Consensus 105 G~e~f~~~~~~aGvdGvii 123 (258)
T PRK13111 105 GVERFAADAAEAGVDGLII 123 (258)
T ss_pred CHHHHHHHHHHcCCcEEEE
Confidence 5555555555555544444
No 466
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.46 E-value=2e+02 Score=20.66 Aligned_cols=37 Identities=16% Similarity=0.335 Sum_probs=25.9
Q ss_pred CCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCCCcEEEcc
Q 025564 145 VEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVAN 192 (251)
Q Consensus 145 ~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g~~li~~n 192 (251)
...+|.||+. -...+......+-+.+.+.+.|++.++
T Consensus 46 i~~aD~VIv~-----------t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 46 IKKADLVIVF-----------TDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred cCCCCEEEEE-----------eCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 3567888873 133555666667777778899999875
No 467
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=22.37 E-value=1.8e+02 Score=25.53 Aligned_cols=34 Identities=9% Similarity=0.184 Sum_probs=18.6
Q ss_pred eccccccCCCccCccHHHHHHHHHHCCCeEEEEeC
Q 025564 36 DQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN 70 (251)
Q Consensus 36 D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN 70 (251)
.+||++.... +++...++++.+++.|+..+++-+
T Consensus 119 GvdgviipDL-P~ee~~~~~~~~~~~gi~~I~lv~ 152 (263)
T CHL00200 119 GVKGLIIPDL-PYEESDYLISVCNLYNIELILLIA 152 (263)
T ss_pred CCeEEEecCC-CHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4555555433 345566666666666665555444
No 468
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=22.26 E-value=2.2e+02 Score=25.43 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=34.1
Q ss_pred HHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564 23 HIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 23 ~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s 72 (251)
.+++ .++++++-.-|. | ..-+...++|+++.++|++++++|...
T Consensus 220 ~~~~--~~~GlVl~~~G~---G-n~~~~~~~~l~~a~~~gipVV~~sr~~ 263 (313)
T PF00710_consen 220 AALA--GAKGLVLEGYGA---G-NVPPALLEALARAVERGIPVVVTSRCP 263 (313)
T ss_dssp HHHT--T-SEEEEEEBTT---T-BSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHhc--cCCEEEEeccCC---C-CCCHHHHHHHHHHHhcCceEEEecccc
Confidence 3445 788888887773 2 266888999999999999999999754
No 469
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=22.09 E-value=2e+02 Score=21.02 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=18.3
Q ss_pred cccCCCceecCCCCCccEEEEe
Q 025564 133 SLEGLGLKVVENVEEADFILAH 154 (251)
Q Consensus 133 ~l~~~g~~~~~~~~~~~~Vvv~ 154 (251)
.|...|++.+++++++|++|+-
T Consensus 22 ~l~~~G~~~~~~~e~AD~iiiN 43 (98)
T PF00919_consen 22 ILQAAGYEIVDDPEEADVIIIN 43 (98)
T ss_pred HHHhcCCeeecccccCCEEEEE
Confidence 5777899888888899999884
No 470
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=22.01 E-value=1.1e+02 Score=30.15 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=32.3
Q ss_pred hHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCC
Q 025564 21 LRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (251)
Q Consensus 21 ~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~ 71 (251)
+++..+-.+++++++|+|+-=--+........++|+++|+.|+|++...++
T Consensus 85 i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~ 135 (584)
T TIGR00705 85 IRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTN 135 (584)
T ss_pred HHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 333333335789999999521111123456777899999999998765543
No 471
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=21.99 E-value=4.2e+02 Score=24.77 Aligned_cols=16 Identities=19% Similarity=0.069 Sum_probs=9.9
Q ss_pred HHHhCCCcEEEccCCccccc
Q 025564 180 ICASKKIPMVVANPDYVTVE 199 (251)
Q Consensus 180 ~~~~~g~~li~~n~D~~~~~ 199 (251)
.+.++|+.++ |.+||.
T Consensus 127 ~~~~rgl~ii----DATCP~ 142 (387)
T PRK13371 127 LLNEKGCHIV----DTTCPW 142 (387)
T ss_pred HHHHCCCeEE----ecCCcc
Confidence 3445677776 666664
No 472
>PRK07475 hypothetical protein; Provisional
Probab=21.96 E-value=2e+02 Score=24.70 Aligned_cols=74 Identities=18% Similarity=0.257 Sum_probs=48.8
Q ss_pred CCC-chhccCChHHHhcccCccEEEEeccccccC---------CCccCccHHHHHHHHHHC---CCeEEEEeCCCCCchh
Q 025564 11 DPH-LFQTLNGLRHIAETRRFKAWLLDQFGVLHD---------GKKPYPGAISTLEMLATT---GAKMVVISNSSRRAST 77 (251)
Q Consensus 11 ~~~-~~~~~~~~~~~~~~~~~~~~l~D~DGvL~~---------g~~~~pGa~e~L~~L~~~---G~~v~ivTN~s~~~~~ 77 (251)
+++ ++...+..+.+.+ ...+++++-| |+++. +...+..+...+..+++. +++++++|-.... -
T Consensus 60 ~~~~~~~l~~aa~~L~~-~G~d~I~~~C-gt~~~~~~~l~~~~~VPv~~ss~~~v~~l~~~~~~~~kIGILtt~~t~--l 135 (245)
T PRK07475 60 DPSLLDAFVAAARELEA-EGVRAITTSC-GFLALFQRELAAALGVPVATSSLLQVPLIQALLPAGQKVGILTADASS--L 135 (245)
T ss_pred CccHHHHHHHHHHHHHH-cCCCEEEech-HHHHHHHHHHHHHcCCCEeccHHHHHHHHHHhccCCCeEEEEeCCchh--h
Confidence 344 6666666666655 3678999988 76531 334455666667766665 6899999876542 2
Q ss_pred HHHHhHhCCCC
Q 025564 78 TIDKLKSLGFD 88 (251)
Q Consensus 78 ~~~~L~~~Gl~ 88 (251)
..+.|++.|++
T Consensus 136 ~~~~l~~~Gi~ 146 (245)
T PRK07475 136 TPAHLLAVGVP 146 (245)
T ss_pred hHHHHHhCCCC
Confidence 45778888986
No 473
>PRK15447 putative protease; Provisional
Probab=21.75 E-value=1.8e+02 Score=25.79 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=32.0
Q ss_pred CCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCCCcEEEccCCc
Q 025564 146 EEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDY 195 (251)
Q Consensus 146 ~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g~~li~~n~D~ 195 (251)
+.+|+|.++.. .+ +...+|+.+++..+++.+.++|.+++.+-|..
T Consensus 27 ~gaDaVY~g~~-~~----~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i 71 (301)
T PRK15447 27 SPVDIVYLGET-VC----SKRRELKVGDWLELAERLAAAGKEVVLSTLAL 71 (301)
T ss_pred CCCCEEEECCc-cC----CCccCCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 45788988421 11 12236999999999998888899988765554
No 474
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=21.49 E-value=98 Score=25.62 Aligned_cols=26 Identities=12% Similarity=-0.023 Sum_probs=21.1
Q ss_pred EecCCCHHHHHHHHHhcC--CceEEEEe
Q 025564 223 WMGKPDKVVQLLCSLSSS--VIILFLIF 248 (251)
Q Consensus 223 ~~GKP~~~~~~~a~~~l~--~~~~~~~~ 248 (251)
-+=||++-|++.++++++ ...+|||.
T Consensus 102 ~cRKP~~gm~~~~~~~~~iD~~~s~~VG 129 (181)
T COG0241 102 DCRKPKPGMLLSALKEYNIDLSRSYVVG 129 (181)
T ss_pred cccCCChHHHHHHHHHhCCCccceEEec
Confidence 677999999999999975 55667763
No 475
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=21.28 E-value=3.5e+02 Score=20.07 Aligned_cols=20 Identities=10% Similarity=0.232 Sum_probs=11.5
Q ss_pred HHHHHHHHCCCeEEEEeCCC
Q 025564 53 STLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 53 e~L~~L~~~G~~v~ivTN~s 72 (251)
++++.+++.+.+++++=|..
T Consensus 96 ~~~~~~~~~~~piiiv~nK~ 115 (157)
T cd01894 96 EIAKYLRKSKKPVILVVNKV 115 (157)
T ss_pred HHHHHHHhcCCCEEEEEECc
Confidence 44555555566666666654
No 476
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=21.28 E-value=98 Score=30.35 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=29.2
Q ss_pred CCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCCCcEEEccCCcc
Q 025564 145 VEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYV 196 (251)
Q Consensus 145 ~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g~~li~~n~D~~ 196 (251)
.+++|++++-| .++.-+...+...++.+.++|+++|+.||...
T Consensus 161 i~~ad~Il~~G---------~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 161 FEHTDLIFFIG---------QNPGTNHPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred HhcCCEEEEEc---------CChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 46789988853 44444444444555556788999999999653
No 477
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=21.09 E-value=2.3e+02 Score=27.52 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=39.5
Q ss_pred EEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCCCc
Q 025564 34 LLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPS 90 (251)
Q Consensus 34 l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~~~ 90 (251)
.+|+.||=.+|.+.++=.--+---+...|.+++.-.|.+. ++..-.+.|+.+|++..
T Consensus 268 ~~D~~gtggdg~~t~nist~~a~v~A~~G~~V~kHG~r~~ss~~Gsadvle~lGv~~~ 325 (534)
T PRK14607 268 TVDTCGTGGDGFGTFNISTTSAFVVAAAGVPVAKHGNRAVSSKSGSADVLEALGVKLE 325 (534)
T ss_pred ceEEccCCCCCCCccccHHHHHHHHHhCCCcEEEECCCCCCCCccHHHHHHHcCCCCC
Confidence 6899999998887543222222234678999999999763 33345578999999754
No 478
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=21.05 E-value=2.8e+02 Score=27.63 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=20.1
Q ss_pred HHHhCCCcEEEccCCccccccCceeeCchHHHHHHHHhCCCeEEecCCC
Q 025564 180 ICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPD 228 (251)
Q Consensus 180 ~~~~~g~~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~g~~~~~~GKP~ 228 (251)
.+.++|..++ |.+||.-.. .=..+..+..-|.+.+++|||+
T Consensus 83 ~~~~~~~~vi----DaTCP~V~k----~~~~~~~~~~~g~~ivi~G~~~ 123 (647)
T PRK00087 83 ELKDKGLKVI----DATCPFVKN----IQKLAKKYYEEGYQIVIVGDKN 123 (647)
T ss_pred HHHHCCCeEE----ECCCcCchH----HHHHHHHHHhCCCEEEEEeCCC
Confidence 3445677766 666764221 0011122222255677777775
No 479
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=21.03 E-value=1.1e+02 Score=24.20 Aligned_cols=20 Identities=10% Similarity=0.484 Sum_probs=15.9
Q ss_pred HhcccCccEEEEeccccccCCCc
Q 025564 24 IAETRRFKAWLLDQFGVLHDGKK 46 (251)
Q Consensus 24 ~~~~~~~~~~l~D~DGvL~~g~~ 46 (251)
+++ +|+.++| +.|+.|.+..
T Consensus 53 Vl~--~y~~viF-vHGCFWh~H~ 72 (150)
T COG3727 53 VLP--KYRCVIF-VHGCFWHGHH 72 (150)
T ss_pred eec--CceEEEE-EeeeeccCCc
Confidence 456 8888888 7999998764
No 480
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=21.00 E-value=6.8e+02 Score=23.27 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=32.5
Q ss_pred CCCchhccCChHHHhcccCccE-EEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564 11 DPHLFQTLNGLRHIAETRRFKA-WLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (251)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~-~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s 72 (251)
.|+=.....+|.+++. +.+. -+.++| ...+.+.||+.|.-.+.++...
T Consensus 90 ~~s~~~~~~sl~~~l~--~~~ipgi~gvD------------TR~lt~~iR~~G~~~g~i~~~~ 138 (382)
T CHL00197 90 SSSNWRQQESLVSYLQ--RHKIPFIFGID------------TRALTQHLRRFGTMNGCISNQN 138 (382)
T ss_pred CCCcccccCCHHHHHH--HCCCceEeCCc------------HHHHHHHHHhcCCceEEEEcCC
Confidence 4444556778888888 4432 233333 5778899999999888888643
No 481
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=20.85 E-value=2.7e+02 Score=26.17 Aligned_cols=109 Identities=15% Similarity=0.095 Sum_probs=67.6
Q ss_pred cCccHHHHHHHHHHCC----CeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHH-HHhccCchhhhhcCCeE
Q 025564 47 PYPGAISTLEMLATTG----AKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ-YLLRRDDAWFAALGRSC 121 (251)
Q Consensus 47 ~~pGa~e~L~~L~~~G----~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~-~L~~~~~~~~~~~g~~~ 121 (251)
-+|.-.+..++++..+ +++.+.+.|...-....+++-..|++.-. -.|.|.....+. +++..+.. +.
T Consensus 92 c~p~le~~~~r~~~~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~-~SVhtT~p~lR~klm~n~~A~------~~- 163 (414)
T COG1625 92 CYPDLEPRGRRARLYYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVY-FSVHTTNPELRAKLMKNPNAE------QL- 163 (414)
T ss_pred cCcchhhhhhHHHhhcCCccceeeeeeccceeccchHHHHHHcCCCeeE-EEEeeCCHHHHHHHhcCCcHH------HH-
Confidence 4788999999998888 78899998875444566778889998763 466666655544 55443321 10
Q ss_pred EEeccCCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCCC
Q 025564 122 IHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKI 186 (251)
Q Consensus 122 ~~~g~~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g~ 186 (251)
.+.+..+++.++++ .+++|++.|.++ -++|.+.++.+-+-|+
T Consensus 164 ------le~L~~f~~~~~~v-----~a~iVl~PGvNd------------ge~L~kT~~dL~~~g~ 205 (414)
T COG1625 164 ------LELLRRFAERCIEV-----HAQIVLCPGVND------------GEELEKTLEDLEEWGA 205 (414)
T ss_pred ------HHHHHHHHHhhhhe-----eeEEEEcCCcCc------------HHHHHHHHHHHHHhCc
Confidence 01133455555533 467788855422 3567777776544343
No 482
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=20.82 E-value=1.4e+02 Score=18.74 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=12.2
Q ss_pred ccCccHHHHHHHHHHCCCe
Q 025564 46 KPYPGAISTLEMLATTGAK 64 (251)
Q Consensus 46 ~~~pGa~e~L~~L~~~G~~ 64 (251)
..++.+.+++++|++.|+.
T Consensus 16 GlI~~~~~~l~~l~~~g~~ 34 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFR 34 (48)
T ss_pred CChhhHHHHHHHHHHcCcc
Confidence 3455677777777766654
No 483
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=20.82 E-value=1.3e+02 Score=28.98 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=28.2
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 48 ~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
.+++.++.+.|.+.|+.++ .|.+ -.+.|++.|++..
T Consensus 10 K~~iv~lAk~L~~lGfeIi-ATgG------Tak~L~e~GI~v~ 45 (511)
T TIGR00355 10 KTGIVEFAQGLVERGVELL-STGG------TAKLLAEAGVPVT 45 (511)
T ss_pred cccHHHHHHHHHHCCCEEE-Eech------HHHHHHHCCCeEE
Confidence 6889999999999999984 5533 3367888999764
No 484
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=20.72 E-value=54 Score=29.97 Aligned_cols=20 Identities=15% Similarity=0.072 Sum_probs=16.8
Q ss_pred ccCccEEEEeccccccCCCc
Q 025564 27 TRRFKAWLLDQFGVLHDGKK 46 (251)
Q Consensus 27 ~~~~~~~l~D~DGvL~~g~~ 46 (251)
+.++++|-||||.||.+=+.
T Consensus 9 l~~i~~~GFDmDyTLa~Y~~ 28 (343)
T TIGR02244 9 LEKIQVFGFDMDYTLAQYKS 28 (343)
T ss_pred cccCCEEEECccccccccCh
Confidence 34899999999999987654
No 485
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=20.70 E-value=94 Score=27.06 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=26.9
Q ss_pred CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
..+.+|+.++++.|+++++|+.|.|..=. .-+...|++.|..
T Consensus 89 i~LRdg~~~~f~~L~~~~IP~lIFSAGlg--dvI~~vL~q~~~~ 130 (246)
T PF05822_consen 89 IMLRDGVEEFFDKLEEHNIPLLIFSAGLG--DVIEEVLRQAGVF 130 (246)
T ss_dssp --B-BTHHHHHHHHHCTT--EEEEEEEEH--HHHHHHHHHTT--
T ss_pred hhhhcCHHHHHHHHHhcCCCEEEEeCCcH--HHHHHHHHHcCCC
Confidence 35679999999999999999999995422 2355666666543
No 486
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=20.66 E-value=2.5e+02 Score=24.69 Aligned_cols=57 Identities=19% Similarity=0.209 Sum_probs=45.7
Q ss_pred cEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564 31 KAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (251)
Q Consensus 31 ~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~ 90 (251)
+.+++=+.|-+....+..+...+-+..|++.|.+++++-.... ++...++++|++..
T Consensus 24 ~~~VIk~gG~~~~~~~l~~~~~~di~~l~~~g~~~VlVHGgg~---~i~~~~~~~g~~~~ 80 (284)
T CHL00202 24 RIMVIKYGGAAMKNLILKADIIKDILFLSCIGLKIVVVHGGGP---EINFWLKQLNISPK 80 (284)
T ss_pred CeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCcEEEEeCCcH---HHHHHHHHCCCCCE
Confidence 5799999998887766777888889999999999999987653 35567778888754
No 487
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=20.62 E-value=3.5e+02 Score=19.97 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=40.2
Q ss_pred ChHHHhcccCccEEEEeccccccCCC--ccCccHHHHHHHHHHCCCeEEEEeCCC----CCchhHHHHhHhCCCC
Q 025564 20 GLRHIAETRRFKAWLLDQFGVLHDGK--KPYPGAISTLEMLATTGAKMVVISNSS----RRASTTIDKLKSLGFD 88 (251)
Q Consensus 20 ~~~~~~~~~~~~~~l~D~DGvL~~g~--~~~pGa~e~L~~L~~~G~~v~ivTN~s----~~~~~~~~~L~~~Gl~ 88 (251)
+++++-. +.+++....+ |-.. ..+|...++.+++++.|..++.++.+. .+.+++.+.+++.++.
T Consensus 17 ~l~~~~g----k~vvl~F~a~-~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (126)
T cd03012 17 SLAQLRG----KVVLLDFWTY-CCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGIT 86 (126)
T ss_pred CHHHhCC----CEEEEEEECC-CCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCC
Confidence 5556522 5677777655 3322 346777777777777788887776421 2345666777888876
No 488
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=20.53 E-value=1.9e+02 Score=25.27 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=24.8
Q ss_pred CCCccCccHHHHHHHHHHC---CCeEE-EEeCCCCCchhHHHHhHhCCCC
Q 025564 43 DGKKPYPGAISTLEMLATT---GAKMV-VISNSSRRASTTIDKLKSLGFD 88 (251)
Q Consensus 43 ~g~~~~pGa~e~L~~L~~~---G~~v~-ivTN~s~~~~~~~~~L~~~Gl~ 88 (251)
+...++|...+.+++.++. |+.++ +++++. ...++|.++|-.
T Consensus 101 d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~----~~ar~l~~~G~~ 146 (248)
T cd04728 101 DDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDP----VLAKRLEDAGCA 146 (248)
T ss_pred CccccccCHHHHHHHHHHHHHCCCEEEEEeCCCH----HHHHHHHHcCCC
Confidence 4455667777777766666 77777 555432 234556666544
No 489
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=20.45 E-value=1.1e+02 Score=26.94 Aligned_cols=44 Identities=14% Similarity=0.051 Sum_probs=34.7
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCCCC-chhHHHHhHhCCCCCcc
Q 025564 48 YPGAISTLEMLATTGAKMVVISNSSRR-ASTTIDKLKSLGFDPSL 91 (251)
Q Consensus 48 ~pGa~e~L~~L~~~G~~v~ivTN~s~~-~~~~~~~L~~~Gl~~~~ 91 (251)
-+...-+++.|++.|-.|.+.++|+-+ ..+++..|.+-|+.++.
T Consensus 53 e~kTA~L~~tL~a~GAeV~~~~sNplSTQDdvaAAL~~~Gi~V~A 97 (268)
T PF05221_consen 53 EAKTAVLAETLKALGAEVRWTGSNPLSTQDDVAAALAEEGIPVFA 97 (268)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEESSTTT--HHHHHHHHHTTEEEEE
T ss_pred hHHHHHHHHHHHHcCCeEEEecCCCcccchHHHHHhccCCceEEE
Confidence 355666889999999999999999854 45788889888998753
No 490
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=20.40 E-value=3.1e+02 Score=24.54 Aligned_cols=47 Identities=21% Similarity=0.219 Sum_probs=36.9
Q ss_pred CChHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCC-CeEEEEe
Q 025564 19 NGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTG-AKMVVIS 69 (251)
Q Consensus 19 ~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G-~~v~ivT 69 (251)
+.+.++.+ ++|+.+++|-- +.|..--|...|-|+.+++.| ++++.+|
T Consensus 34 ~~~~~i~~-~~f~llVVDps---~~g~~~~~~~~eelr~~~~gg~~pIAYls 81 (300)
T COG2342 34 AYINEILN-SPFDLLVVDPS---YCGPFNTPWTIEELRTKADGGVKPIAYLS 81 (300)
T ss_pred chHHHHhc-CCCcEEEEecc---ccCCCCCcCcHHHHHHHhcCCeeEEEEEe
Confidence 35567776 58999999983 445556688899999999999 7788887
No 491
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=20.29 E-value=5.3e+02 Score=21.76 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhC-CCcEEEccCCccccc
Q 025564 173 DLEKILEICASK-KIPMVVANPDYVTVE 199 (251)
Q Consensus 173 ~l~~a~~~~~~~-g~~li~~n~D~~~~~ 199 (251)
++...++.+..+ |.++++.--|.-+..
T Consensus 97 ~~v~~l~~lad~lgi~Vi~~GL~~DFrg 124 (201)
T COG1435 97 ELVYVLNELADRLGIPVICYGLDTDFRG 124 (201)
T ss_pred HHHHHHHHHHhhcCCEEEEecccccccc
Confidence 344445555666 888888765555443
No 492
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=20.26 E-value=2.9e+02 Score=25.75 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=53.7
Q ss_pred hhccCChHHHhcccCccEEEEeccccc--cCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccc
Q 025564 15 FQTLNGLRHIAETRRFKAWLLDQFGVL--HDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLF 92 (251)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~l~D~DGvL--~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~ 92 (251)
|.+++.+.+.+. +.+.+++- |.+ +.....-.|..++.+.+.+.+...++.= .. ....++++|+... |
T Consensus 299 p~Ti~~~~~~i~--~aktv~wN--GP~GvfE~~~F~~GT~~l~~aia~~~a~sivGG-Gd-----t~~a~~~~g~~~~-~ 367 (384)
T PF00162_consen 299 PKTIELFSEIIK--KAKTVFWN--GPMGVFEIENFAEGTRALAKAIAKSGAFSIVGG-GD-----TAAAIKKFGLADK-F 367 (384)
T ss_dssp HHHHHHHHHHHH--T-SEEEEE--S-SS-TTSGGGCHHHHHHHHHHHHHTSEEEEES-HH-----HHHHHHHTTGGGG-S
T ss_pred HHHHHHHHHHHh--CCCeEEEE--CCcccCchhhhhHHHHHHHHHHHhcCCeEEEcc-cH-----HHHHHHhcCcccc-e
Confidence 556667778888 77775422 222 1112344699999999988865555442 11 2244667899887 7
Q ss_pred cceeechhhHHHHHh
Q 025564 93 AGAITSGELTHQYLL 107 (251)
Q Consensus 93 ~~Iits~~~~~~~L~ 107 (251)
.+|-|++-+.-+||.
T Consensus 368 shvSTGGGA~L~~Le 382 (384)
T PF00162_consen 368 SHVSTGGGAFLEFLE 382 (384)
T ss_dssp SEEESSSHHHHHHHT
T ss_pred eEEecCcHHHHHHhc
Confidence 999999999988885
No 493
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=20.19 E-value=61 Score=29.56 Aligned_cols=55 Identities=11% Similarity=0.056 Sum_probs=34.8
Q ss_pred chhccCChHHHhcccCccEEEEe-ccccccCCCccCccHH-HHHHHHHHCCCeEEEEeC
Q 025564 14 LFQTLNGLRHIAETRRFKAWLLD-QFGVLHDGKKPYPGAI-STLEMLATTGAKMVVISN 70 (251)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~D-~DGvL~~g~~~~pGa~-e~L~~L~~~G~~v~ivTN 70 (251)
++..++++.++++ .-|+++++ -|=-+.-+.+-+|-++ ..++.+++.|+|++++|+
T Consensus 226 ~~~~v~nl~eI~~--~sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq 282 (348)
T PF00224_consen 226 TKEAVENLDEILE--ASDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQ 282 (348)
T ss_dssp SHHHHHTHHHHHH--HSSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESS
T ss_pred cHHHHhhHHHHhh--hcCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhH
Confidence 3456678888888 65555554 2211122334456664 468888999999999995
No 494
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=20.15 E-value=2.2e+02 Score=24.08 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=26.5
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHh
Q 025564 49 PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS 84 (251)
Q Consensus 49 pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~ 84 (251)
+...++|+++|+.|.+.+++-|-.++.+.+...+..
T Consensus 93 ~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~ 128 (220)
T PRK08883 93 EHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDK 128 (220)
T ss_pred ccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHh
Confidence 567788999999999999998876654455555543
No 495
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=20.08 E-value=1.9e+02 Score=22.19 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=18.3
Q ss_pred HHHHHHHHHCCC-eEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564 52 ISTLEMLATTGA-KMVVISNSSRRASTTIDKLKSLGFDP 89 (251)
Q Consensus 52 ~e~L~~L~~~G~-~v~ivTN~s~~~~~~~~~L~~~Gl~~ 89 (251)
.++++.+.+.+. .++++|+.+- -....++|++.|...
T Consensus 89 ~d~~~~~~~~~~d~ivLvSgD~D-f~~~i~~lr~~G~~V 126 (149)
T cd06167 89 IDALELAYKRRIDTIVLVSGDSD-FVPLVERLRELGKRV 126 (149)
T ss_pred HHHHHHhhhcCCCEEEEEECCcc-HHHHHHHHHHcCCEE
Confidence 344555555444 3455555432 223446666666653
No 496
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=20.06 E-value=1.4e+02 Score=25.82 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=30.8
Q ss_pred cCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeC
Q 025564 28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN 70 (251)
Q Consensus 28 ~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN 70 (251)
|+.+..+||= =|=--.-+....+.++++.|.+.|..++++|-
T Consensus 153 M~P~vmLFDE-PTSALDPElv~EVL~vm~~LA~eGmTMivVTH 194 (240)
T COG1126 153 MDPKVMLFDE-PTSALDPELVGEVLDVMKDLAEEGMTMIIVTH 194 (240)
T ss_pred CCCCEEeecC-CcccCCHHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3778888872 22222335567888899999999999999993
Done!