BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025565
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EFV|B Chain B, Three-Dimensional Structure Of Human Electron Transfer
Flavoprotein To 2.1 A Resolution
pdb|1T9G|S Chain S, Structure Of The Human Mcad:etf Complex
Length = 255
Score = 324 bits (831), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 162/254 (63%), Positives = 197/254 (77%), Gaps = 6/254 (2%)
Query: 1 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVA 60
++++VA+KRV+DYAVKIRVK DRTGV T+ VK SMNPFCEIA+EEA+R+KE L EV+A
Sbjct: 4 LRVLVAVKRVIDYAVKIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIA 63
Query: 61 VSMGPAQCVDTLRTGLAMGADRGVHVEA----AGQLYPLTVAKILKSLVEVEKPGLIILG 116
VS GPAQC +T+RT LAMGADRG+HVE A +L PL VA++L L E EK L++LG
Sbjct: 64 VSCGPAQCQETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLG 123
Query: 117 KQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVI 176
KQAIDDDCNQTGQM AG L WPQGTFAS+V L+ +K VERE+DGGLETL L LPAV+
Sbjct: 124 KQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDK--LKVEREIDGGLETLRLKLPAVV 181
Query: 177 TTDLRLNQPRYATLPNIMKAKSKPIKKYTPQELNVDVKSDLEVIQVTEPPKRKAGVILSS 236
T DLRLN+PRYATLPNIMKAK K I+ P +L VD+ S L VI V +PP+R AGV + +
Sbjct: 182 TADLRLNEPRYATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVET 241
Query: 237 VEELIDKLKNEARV 250
E+L+ KLK R+
Sbjct: 242 TEDLVAKLKEIGRI 255
>pdb|2A1T|S Chain S, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1U|B Chain B, Crystal Structure Of The Human Etf E165betaa Mutant
Length = 255
Score = 322 bits (825), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 161/254 (63%), Positives = 196/254 (77%), Gaps = 6/254 (2%)
Query: 1 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVA 60
++++VA+KRV+DYAVKIRVK DRTGV T+ VK SMNPFCEIA+EEA+R+KE L EV+A
Sbjct: 4 LRVLVAVKRVIDYAVKIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIA 63
Query: 61 VSMGPAQCVDTLRTGLAMGADRGVHVEA----AGQLYPLTVAKILKSLVEVEKPGLIILG 116
VS GPAQC +T+RT LAMGADRG+HVE A +L PL VA++L L E EK L++LG
Sbjct: 64 VSCGPAQCQETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLG 123
Query: 117 KQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVI 176
KQAIDDDCNQTGQM AG L WPQGTFAS+V L+ +K VER +DGGLETL L LPAV+
Sbjct: 124 KQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDK--LKVERAIDGGLETLRLKLPAVV 181
Query: 177 TTDLRLNQPRYATLPNIMKAKSKPIKKYTPQELNVDVKSDLEVIQVTEPPKRKAGVILSS 236
T DLRLN+PRYATLPNIMKAK K I+ P +L VD+ S L VI V +PP+R AGV + +
Sbjct: 182 TADLRLNEPRYATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVET 241
Query: 237 VEELIDKLKNEARV 250
E+L+ KLK R+
Sbjct: 242 TEDLVAKLKEIGRI 255
>pdb|1EFP|B Chain B, Electron Transfer Flavoprotein (Etf) From Paracoccus
Denitrificans
pdb|1EFP|D Chain D, Electron Transfer Flavoprotein (Etf) From Paracoccus
Denitrificans
Length = 252
Score = 280 bits (715), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 149/255 (58%), Positives = 186/255 (72%), Gaps = 7/255 (2%)
Query: 1 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVA 60
MK++V +KR++DY VK RVKSD +GV+ NVKMSMNPF EIA+EEA+R+KE G A E++A
Sbjct: 1 MKVLVPVKRLIDYNVKARVKSDGSGVDLANVKMSMNPFDEIAVEEAIRLKEKGQAEEIIA 60
Query: 61 VSMGPAQCVDTLRTGLAMGADRGVHVEAAG----QLYPLTVAKILKSLVEVEKPGLIILG 116
VS+G Q +TLRT LAMGADR + V AA + PL VAKIL ++ E LII G
Sbjct: 61 VSIGVKQAAETLRTALAMGADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAG 120
Query: 117 KQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVI 176
KQAID+D N TGQM+A +L W Q TFASKV ++ K A V REVDGGL+T+ + LPAV+
Sbjct: 121 KQAIDNDMNATGQMLAAILGWAQATFASKVEIEGAK--AKVTREVDGGLQTIAVSLPAVV 178
Query: 177 TTDLRLNQPRYATLPNIMKAKSKPIKKYTPQELNVDVKSDLEVIQVTEPPKRKAGVILSS 236
T DLRLN+PRYA+LPNIMKAK KP+ + T + VDV LEV+ V EP RKAG+ + S
Sbjct: 179 TADLRLNEPRYASLPNIMKAKKKPLDEKTAADYGVDVAPRLEVVSVREPEGRKAGIKVGS 238
Query: 237 VEELIDKLKNEARVI 251
V+EL+ KLK EA VI
Sbjct: 239 VDELVGKLK-EAGVI 252
>pdb|1O94|C Chain C, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|E Chain E, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|C Chain C, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|E Chain E, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O96|A Chain A, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|C Chain C, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|E Chain E, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|Q Chain Q, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O97|C Chain C, Structure Of Electron Transferring Flavoprotein From
Methylophilus Methylotrophus, Recognition Loop Removed
By Limited Proteolysis
pdb|3CLR|C Chain C, Crystal Structure Of The R236a Etf Mutant From M.
Methylotrophus
pdb|3CLS|C Chain C, Crystal Structure Of The R236c Mutant Of Etf From
Methylophilus Methylotrophus
pdb|3CLT|C Chain C, Crystal Structure Of The R236e Mutant Of Methylophilus
Methylotrophus Etf
pdb|3CLU|C Chain C, Crystal Structure Of The R236k Mutant From Methylophilus
Methylotrophus Etf
Length = 264
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 121/209 (57%), Gaps = 4/209 (1%)
Query: 1 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESG-LASEVV 59
MKI+VA+K+ ++ D V+ + + +N + + +LEEA++IKES EVV
Sbjct: 1 MKILVAVKQTAALEEDFEIREDGMDVDEDFMMYDLNEWDDFSLEEAMKIKESSDTDVEVV 60
Query: 60 AVSMGPAQCVDTLRTGLAMGADRGVHV--EAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117
VS+GP + ++LR LA GADR V V +AA + V +IL +++ E P ++ G
Sbjct: 61 VVSVGPDRVDESLRKCLAKGADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGV 120
Query: 118 QAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGG-LETLELDLPAVI 176
Q+ D TG VA L+WP + + A++ RE++GG L+ +E++ PAV+
Sbjct: 121 QSSDQAYASTGISVASYLNWPHAAVVADLQYKPGDNKAVIRRELEGGMLQEVEINCPAVL 180
Query: 177 TTDLRLNQPRYATLPNIMKAKSKPIKKYT 205
T L +N+PRYA+L I +A +KPI++ +
Sbjct: 181 TIQLGINKPRYASLRGIKQAATKPIEEVS 209
>pdb|3ZTA|A Chain A, The Bacterial Stressosome: A Modular System That Has Been
Adapted To Control Secondary Messenger Signaling
Length = 146
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 16/100 (16%)
Query: 8 KRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQ 67
+ +V+ A+ + K D+ GV N + FC L + +++SG + S +
Sbjct: 10 ENIVEKAINLLSKEDQAGVHFNEISALTRDFCRAILSD---LEQSGFTT-----SELEKE 61
Query: 68 CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEV 107
D ++ A +G H+E + L + KIL S + V
Sbjct: 62 IADKVKIXFA----QGYHIE----VLQLILEKILDSFISV 93
>pdb|3C4A|A Chain A, Crystal Structure Of Viod Hydroxylase In Complex With Fad
From Chromobacterium Violaceum. Northeast Structural
Genomics Consortium Target Cvr158
Length = 381
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 205 TPQELNVDVKSDLEVIQVTEPPKRKAGVILSSVEE--LIDKLKNEAR 249
P+ LN D +++ EP GV+L VE L+ L+++ R
Sbjct: 63 APERLNPQFLEDFKLVHHNEPSLXSTGVLLCGVERRGLVHALRDKCR 109
>pdb|3B1N|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1N|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1O|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1O|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1P|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Inosine
pdb|3B1Q|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
Length = 326
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 6/93 (6%)
Query: 10 VVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVS----MGP 65
V DY K+ D+TG + + + E I+ ++ AV + P
Sbjct: 191 VNDYEAKL--VCDKTGWSEDEIASRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDP 248
Query: 66 AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVA 98
C D R GL G + G AG+L L A
Sbjct: 249 TGCGDAFRGGLLYGIEHGFDWATAGRLASLMGA 281
>pdb|3B1R|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
Length = 320
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 6/93 (6%)
Query: 10 VVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVS----MGP 65
V DY K+ D+TG + + + E I+ ++ AV + P
Sbjct: 199 VNDYEAKL--VCDKTGWSEDEIASRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDP 256
Query: 66 AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVA 98
C D R GL G + G AG+L L A
Sbjct: 257 TGCGDAFRGGLLYGIEHGFDWATAGRLASLMGA 289
>pdb|2J3L|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3L|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3M|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
pdb|2J3M|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
Length = 572
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 129 QMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYA 188
Q+ AG+ S+ A++V+ ++L + RE ++ +E+ +PA++ +L RY
Sbjct: 34 QVAAGIYSYL--PLANRVL----EKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYE 87
Query: 189 TL-PNIMKAKSKPIKKY 204
T PN+ + K + + Y
Sbjct: 88 TYGPNLYRLKDRNDRDY 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,497,781
Number of Sequences: 62578
Number of extensions: 247311
Number of successful extensions: 663
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 650
Number of HSP's gapped (non-prelim): 13
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)