Query 025565
Match_columns 251
No_of_seqs 194 out of 1464
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 07:08:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03359 putative electron tra 100.0 1E-65 2.2E-70 452.5 30.9 244 1-247 1-255 (256)
2 PRK12342 hypothetical protein; 100.0 6.6E-64 1.4E-68 440.3 31.3 241 1-247 1-252 (254)
3 COG2086 FixA Electron transfer 100.0 5.7E-63 1.2E-67 434.1 28.6 249 1-251 1-260 (260)
4 KOG3180 Electron transfer flav 100.0 3E-53 6.4E-58 351.7 23.4 249 1-250 4-254 (254)
5 cd01714 ETF_beta The electron 100.0 1.5E-40 3.2E-45 284.5 27.2 200 2-205 1-202 (202)
6 cd01985 ETF The electron trans 100.0 8E-33 1.7E-37 232.3 23.0 176 2-205 1-181 (181)
7 PF01012 ETF: Electron transfe 100.0 6.6E-30 1.4E-34 211.3 15.0 148 32-185 10-164 (164)
8 cd01715 ETF_alpha The electron 99.9 2.2E-23 4.7E-28 173.3 17.2 139 34-186 12-155 (168)
9 PLN00022 electron transfer fla 99.9 2.4E-19 5.2E-24 164.5 23.2 149 28-186 33-190 (356)
10 PRK03363 fixB putative electro 99.8 3.1E-18 6.7E-23 155.0 21.5 148 40-206 18-170 (313)
11 PRK11916 electron transfer fla 99.8 2.3E-18 5E-23 155.7 17.3 135 41-189 19-157 (312)
12 COG2025 FixB Electron transfer 99.8 7.4E-18 1.6E-22 151.7 20.2 142 32-189 11-158 (313)
13 KOG3954 Electron transfer flav 99.2 2.9E-10 6.3E-15 99.3 14.7 144 29-186 28-178 (336)
14 cd00293 USP_Like Usp: Universa 96.2 0.14 3E-06 38.4 11.7 98 36-140 9-128 (130)
15 cd01987 USP_OKCHK USP domain i 95.5 0.096 2.1E-06 40.1 8.2 95 36-138 9-119 (124)
16 cd01988 Na_H_Antiporter_C The 95.5 0.33 7.1E-06 37.1 11.2 98 36-139 9-128 (132)
17 cd01989 STK_N The N-terminal d 94.6 0.57 1.2E-05 36.8 10.4 81 36-122 9-116 (146)
18 PF00582 Usp: Universal stress 92.8 2 4.4E-05 32.1 10.3 99 35-140 11-137 (140)
19 PRK15118 universal stress glob 92.7 1.8 3.8E-05 34.0 10.1 78 35-119 12-113 (144)
20 PRK10116 universal stress prot 92.1 1.7 3.7E-05 33.8 9.3 95 38-139 15-134 (142)
21 PRK15005 universal stress prot 91.3 3.5 7.5E-05 32.1 10.3 95 39-140 17-141 (144)
22 PRK09982 universal stress prot 91.1 1.2 2.6E-05 35.2 7.5 76 36-118 13-112 (142)
23 PRK15456 universal stress prot 91.1 4.8 0.0001 31.4 10.9 96 37-140 15-139 (142)
24 PF07355 GRDB: Glycine/sarcosi 90.4 1 2.3E-05 41.7 7.2 51 93-143 64-118 (349)
25 PRK07199 phosphoribosylpyropho 90.0 13 0.00028 33.8 14.0 131 5-140 29-187 (301)
26 PRK11175 universal stress prot 89.9 3.3 7.2E-05 36.7 10.0 97 37-140 170-296 (305)
27 PRK02269 ribose-phosphate pyro 88.9 16 0.00035 33.4 13.9 132 5-140 32-192 (320)
28 PRK10481 hypothetical protein; 88.9 3.5 7.7E-05 35.9 9.0 85 55-143 129-213 (224)
29 TIGR01918 various_sel_PB selen 88.7 1.6 3.5E-05 41.4 7.2 51 93-143 60-114 (431)
30 PRK03092 ribose-phosphate pyro 88.3 15 0.00032 33.5 13.1 130 5-138 16-174 (304)
31 KOG0081 GTPase Rab27, small G 88.1 0.74 1.6E-05 38.3 4.0 64 77-140 91-159 (219)
32 PRK12652 putative monovalent c 87.5 5.5 0.00012 37.2 9.9 94 35-128 14-132 (357)
33 PF07287 DUF1446: Protein of u 87.2 3 6.6E-05 39.0 8.1 95 35-138 81-186 (362)
34 PRK11175 universal stress prot 87.1 4.1 8.9E-05 36.1 8.7 100 35-140 12-142 (305)
35 TIGR01917 gly_red_sel_B glycin 87.1 2.6 5.7E-05 40.0 7.6 51 93-143 60-114 (431)
36 PRK01259 ribose-phosphate pyro 87.1 18 0.00039 33.0 12.9 132 5-140 27-185 (309)
37 TIGR01860 VNFD nitrogenase van 86.8 4.4 9.4E-05 39.0 9.2 80 43-140 340-419 (461)
38 COG0299 PurN Folate-dependent 86.3 7.9 0.00017 33.1 9.4 75 39-117 13-87 (200)
39 PF03808 Glyco_tran_WecB: Glyc 86.1 12 0.00027 30.8 10.5 102 30-139 26-129 (172)
40 TIGR01284 alt_nitrog_alph nitr 86.0 4.8 0.0001 38.7 9.0 33 100-141 386-418 (457)
41 PF02585 PIG-L: GlcNAc-PI de-N 85.9 11 0.00023 29.1 9.5 51 69-119 56-110 (128)
42 PRK10490 sensor protein KdpD; 85.8 6.9 0.00015 40.8 10.7 79 35-121 259-348 (895)
43 COG0041 PurE Phosphoribosylcar 85.6 6.7 0.00015 32.2 8.2 77 58-140 4-84 (162)
44 PLN03159 cation/H(+) antiporte 85.5 3.8 8.3E-05 42.4 8.6 83 32-118 636-751 (832)
45 PRK02458 ribose-phosphate pyro 84.3 27 0.00058 32.1 12.7 132 5-140 36-196 (323)
46 cd07941 DRE_TIM_LeuA3 Desulfob 83.3 21 0.00046 31.7 11.4 92 40-134 118-217 (273)
47 TIGR01162 purE phosphoribosyla 83.2 12 0.00026 30.8 8.9 75 60-140 2-80 (156)
48 cd03466 Nitrogenase_NifN_2 Nit 82.7 15 0.00032 35.0 10.7 32 100-140 363-394 (429)
49 PRK02910 light-independent pro 82.6 9.7 0.00021 37.2 9.6 32 100-140 353-384 (519)
50 cd01977 Nitrogenase_VFe_alpha 82.1 7.2 0.00016 36.9 8.3 31 102-141 351-381 (415)
51 cd01984 AANH_like Adenine nucl 81.9 7.5 0.00016 27.6 6.6 55 35-122 7-61 (86)
52 CHL00076 chlB photochlorophyll 81.9 7.9 0.00017 37.8 8.7 33 99-140 364-396 (513)
53 TIGR01278 DPOR_BchB light-inde 81.1 9.2 0.0002 37.3 8.8 32 100-140 355-386 (511)
54 COG1922 WecG Teichoic acid bio 81.0 18 0.0004 32.1 9.9 83 31-119 87-171 (253)
55 PF04007 DUF354: Protein of un 80.8 19 0.0004 33.3 10.3 97 35-143 8-110 (335)
56 TIGR01251 ribP_PPkin ribose-ph 80.6 44 0.00096 30.3 13.5 132 5-140 27-186 (308)
57 PF00731 AIRC: AIR carboxylase 80.3 11 0.00024 30.9 7.6 76 59-140 3-82 (150)
58 TIGR03446 mycothiol_Mca mycoth 80.2 16 0.00035 32.9 9.5 48 70-117 65-129 (283)
59 cd01974 Nitrogenase_MoFe_beta 79.8 20 0.00043 34.1 10.5 32 100-140 368-399 (435)
60 PRK06849 hypothetical protein; 78.7 12 0.00026 34.8 8.5 70 41-118 16-85 (389)
61 PF13477 Glyco_trans_4_2: Glyc 78.1 24 0.00053 26.9 8.9 96 40-145 11-108 (139)
62 TIGR01861 ANFD nitrogenase iro 78.0 10 0.00022 37.1 8.0 29 103-140 392-420 (513)
63 TIGR03445 mycothiol_MshB 1D-my 77.9 20 0.00042 32.3 9.3 47 69-115 63-129 (284)
64 PRK12330 oxaloacetate decarbox 77.6 34 0.00073 33.5 11.3 97 41-139 124-228 (499)
65 COG0604 Qor NADPH:quinone redu 77.3 12 0.00026 34.2 7.9 76 45-137 158-233 (326)
66 TIGR01862 N2-ase-Ialpha nitrog 76.7 21 0.00045 34.2 9.6 32 101-141 379-410 (443)
67 PF00107 ADH_zinc_N: Zinc-bind 76.4 8 0.00017 29.4 5.6 60 45-115 5-64 (130)
68 COG2120 Uncharacterized protei 76.3 18 0.00039 31.6 8.4 50 69-118 66-118 (237)
69 PRK00553 ribose-phosphate pyro 76.2 65 0.0014 29.7 13.9 132 5-140 36-195 (332)
70 cd02064 FAD_synthetase_N FAD s 76.2 13 0.00028 30.9 7.2 81 36-120 12-110 (180)
71 cd01981 Pchlide_reductase_B Pc 74.8 20 0.00044 33.9 9.0 35 99-142 360-394 (430)
72 cd07945 DRE_TIM_CMS Leptospira 74.3 53 0.0011 29.4 11.1 86 45-133 119-212 (280)
73 PF00289 CPSase_L_chain: Carba 74.1 13 0.00028 28.6 6.2 83 40-134 12-94 (110)
74 PRK08195 4-hyroxy-2-oxovalerat 74.1 49 0.0011 30.5 11.1 89 43-133 117-210 (337)
75 COG1212 KdsB CMP-2-keto-3-deox 73.6 16 0.00035 32.1 7.2 32 58-89 21-52 (247)
76 TIGR01286 nifK nitrogenase mol 73.1 39 0.00085 33.1 10.7 32 100-140 428-459 (515)
77 cd01976 Nitrogenase_MoFe_alpha 72.9 26 0.00056 33.2 9.2 32 100-140 360-391 (421)
78 PRK05692 hydroxymethylglutaryl 72.9 61 0.0013 29.2 11.2 90 40-133 119-220 (287)
79 PRK14040 oxaloacetate decarbox 72.3 40 0.00088 33.7 10.6 99 34-138 119-225 (593)
80 cd07943 DRE_TIM_HOA 4-hydroxy- 71.6 66 0.0014 28.3 11.0 89 43-134 114-207 (263)
81 TIGR03217 4OH_2_O_val_ald 4-hy 71.6 68 0.0015 29.5 11.4 89 43-133 116-209 (333)
82 COG0503 Apt Adenine/guanine ph 71.6 11 0.00024 31.6 5.6 72 93-170 34-108 (179)
83 cd07944 DRE_TIM_HOA_like 4-hyd 71.5 59 0.0013 28.8 10.7 75 39-114 107-186 (266)
84 cd03174 DRE_TIM_metallolyase D 70.5 70 0.0015 27.6 11.1 68 41-109 115-189 (265)
85 cd01971 Nitrogenase_VnfN_like 70.3 42 0.00091 31.8 10.0 32 100-140 358-393 (427)
86 PRK07904 short chain dehydroge 69.6 47 0.001 28.6 9.5 75 41-117 20-95 (253)
87 COG1064 AdhP Zn-dependent alco 69.6 14 0.00031 34.2 6.4 13 234-246 314-326 (339)
88 cd03411 Ferrochelatase_N Ferro 69.2 20 0.00044 29.1 6.6 78 37-115 65-153 (159)
89 PRK05627 bifunctional riboflav 69.0 50 0.0011 30.1 9.8 84 34-120 24-125 (305)
90 TIGR00236 wecB UDP-N-acetylglu 68.9 32 0.00069 31.3 8.6 82 54-140 27-114 (365)
91 TIGR01283 nifE nitrogenase mol 68.9 73 0.0016 30.5 11.4 79 54-141 324-418 (456)
92 PRK12331 oxaloacetate decarbox 68.8 66 0.0014 31.0 11.0 100 34-139 118-225 (448)
93 COG4126 Hydantoin racemase [Am 68.7 36 0.00079 29.7 8.2 107 33-144 73-205 (230)
94 cd01968 Nitrogenase_NifE_I Nit 68.7 44 0.00096 31.4 9.7 73 55-140 286-378 (410)
95 cd06533 Glyco_transf_WecG_TagA 68.2 66 0.0014 26.4 10.3 102 31-142 25-130 (171)
96 cd07938 DRE_TIM_HMGL 3-hydroxy 67.2 92 0.002 27.7 11.0 65 43-108 116-191 (274)
97 PF06506 PrpR_N: Propionate ca 66.6 27 0.0006 28.7 7.1 86 35-140 61-147 (176)
98 cd01965 Nitrogenase_MoFe_beta_ 66.4 74 0.0016 30.1 10.8 77 55-140 298-393 (428)
99 PF05728 UPF0227: Uncharacteri 66.0 26 0.00057 29.5 6.9 64 71-139 19-84 (187)
100 PRK14478 nitrogenase molybdenu 65.9 72 0.0016 30.8 10.7 32 100-140 384-415 (475)
101 PRK11890 phosphate acetyltrans 65.7 45 0.00098 30.6 8.8 78 34-121 27-108 (312)
102 TIGR01285 nifN nitrogenase mol 65.4 44 0.00096 31.8 9.1 73 55-140 310-395 (432)
103 cd00885 cinA Competence-damage 65.3 77 0.0017 26.1 10.7 67 73-145 26-94 (170)
104 cd07937 DRE_TIM_PC_TC_5S Pyruv 65.0 1E+02 0.0022 27.4 11.3 89 41-133 118-213 (275)
105 cd06353 PBP1_BmpA_Med_like Per 64.8 63 0.0014 28.2 9.4 90 38-135 15-117 (258)
106 PRK14041 oxaloacetate decarbox 64.7 84 0.0018 30.5 10.8 95 40-138 121-223 (467)
107 TIGR03568 NeuC_NnaA UDP-N-acet 63.6 25 0.00055 32.5 6.9 84 54-140 27-121 (365)
108 PRK00726 murG undecaprenyldiph 62.8 49 0.0011 29.8 8.6 92 41-142 17-120 (357)
109 PRK01215 competence damage-ind 62.2 1.1E+02 0.0023 27.3 10.4 82 57-142 5-95 (264)
110 PLN02948 phosphoribosylaminoim 61.8 67 0.0014 31.9 9.8 78 57-140 411-492 (577)
111 TIGR03679 arCOG00187 arCOG0018 61.7 79 0.0017 27.1 9.2 72 69-143 46-119 (218)
112 PRK09282 pyruvate carboxylase 61.6 1E+02 0.0022 30.9 11.0 94 34-133 118-218 (592)
113 PF00682 HMGL-like: HMGL-like 61.5 1E+02 0.0022 26.3 11.8 94 43-139 110-209 (237)
114 PRK13671 hypothetical protein; 61.5 59 0.0013 29.6 8.7 88 34-121 8-105 (298)
115 PRK13811 orotate phosphoribosy 61.3 44 0.00095 27.6 7.3 44 93-140 40-83 (170)
116 PLN02369 ribose-phosphate pyro 61.3 1.3E+02 0.0028 27.3 13.8 131 5-139 18-178 (302)
117 PRK09219 xanthine phosphoribos 59.8 13 0.00029 31.4 3.9 45 92-140 30-77 (189)
118 TIGR01282 nifD nitrogenase mol 59.7 45 0.00097 32.2 8.0 31 100-139 395-425 (466)
119 KOG0024 Sorbitol dehydrogenase 58.6 37 0.0008 31.5 6.8 91 45-147 160-253 (354)
120 cd03409 Chelatase_Class_II Cla 58.5 61 0.0013 23.4 7.1 52 37-88 14-67 (101)
121 PRK12581 oxaloacetate decarbox 58.5 1.3E+02 0.0028 29.2 10.9 101 32-138 125-233 (468)
122 cd07940 DRE_TIM_IPMS 2-isoprop 58.5 1.3E+02 0.0028 26.5 11.2 66 68-134 145-211 (268)
123 PF10087 DUF2325: Uncharacteri 58.5 31 0.00067 25.5 5.4 76 60-140 2-79 (97)
124 PLN02746 hydroxymethylglutaryl 58.3 1.3E+02 0.0029 27.9 10.6 95 35-133 153-262 (347)
125 cd01967 Nitrogenase_MoFe_alpha 58.3 75 0.0016 29.6 9.2 77 55-140 285-377 (406)
126 cd03819 GT1_WavL_like This fam 57.7 1.1E+02 0.0023 26.9 9.8 99 37-146 11-111 (355)
127 PLN02871 UDP-sulfoquinovose:DA 57.7 24 0.00051 33.5 5.8 96 36-143 74-175 (465)
128 TIGR02090 LEU1_arch isopropylm 57.6 1.5E+02 0.0033 27.5 11.0 88 43-134 114-206 (363)
129 PRK11858 aksA trans-homoaconit 57.5 1.5E+02 0.0033 27.6 11.1 88 43-134 118-210 (378)
130 TIGR02432 lysidine_TilS_N tRNA 56.5 1.1E+02 0.0024 25.0 9.2 85 36-121 9-111 (189)
131 COG0137 ArgG Argininosuccinate 56.3 41 0.00088 31.8 6.8 73 48-121 23-124 (403)
132 PLN02293 adenine phosphoribosy 56.2 22 0.00048 29.9 4.7 41 96-140 49-89 (187)
133 PF00148 Oxidored_nitro: Nitro 56.1 1.1E+02 0.0024 28.2 9.9 80 41-140 282-363 (398)
134 PF02350 Epimerase_2: UDP-N-ac 56.0 47 0.001 30.6 7.2 86 49-140 3-95 (346)
135 PRK14477 bifunctional nitrogen 55.2 84 0.0018 33.1 9.7 32 100-140 380-411 (917)
136 cd03786 GT1_UDP-GlcNAc_2-Epime 54.9 48 0.001 29.7 7.1 92 46-141 19-117 (363)
137 TIGR01744 XPRTase xanthine pho 54.8 18 0.00039 30.6 4.0 45 92-140 30-77 (191)
138 CHL00073 chlN photochlorophyll 54.6 84 0.0018 30.4 8.9 67 41-116 325-398 (457)
139 PF09370 TIM-br_sig_trns: TIM- 54.5 11 0.00024 33.7 2.7 66 47-117 143-220 (268)
140 cd01992 PP-ATPase N-terminal d 54.1 1.2E+02 0.0025 24.6 10.9 84 37-121 10-108 (185)
141 PRK14571 D-alanyl-alanine synt 53.5 69 0.0015 28.5 7.8 32 109-141 53-84 (299)
142 TIGR01108 oadA oxaloacetate de 53.3 1.5E+02 0.0033 29.5 10.7 88 42-133 119-213 (582)
143 PRK05599 hypothetical protein; 52.9 1.3E+02 0.0028 25.6 9.2 71 43-117 14-85 (246)
144 PRK02812 ribose-phosphate pyro 52.9 1.9E+02 0.0041 26.7 13.9 131 5-139 48-206 (330)
145 COG1348 NifH Nitrogenase subun 52.8 33 0.00072 30.5 5.3 62 80-143 143-210 (278)
146 TIGR00083 ribF riboflavin kina 52.6 1.4E+02 0.003 27.0 9.5 78 40-120 15-109 (288)
147 PRK07178 pyruvate carboxylase 52.6 71 0.0015 30.7 8.2 92 39-140 11-102 (472)
148 PF06574 FAD_syn: FAD syntheta 52.4 51 0.0011 26.9 6.2 95 39-137 21-134 (157)
149 PF05636 HIGH_NTase1: HIGH Nuc 52.1 30 0.00066 32.6 5.4 84 34-121 9-106 (388)
150 cd00316 Oxidoreductase_nitroge 52.0 1.5E+02 0.0033 27.2 10.1 74 54-140 277-370 (399)
151 PRK08462 biotin carboxylase; V 51.8 58 0.0013 30.8 7.4 70 39-117 13-84 (445)
152 TIGR00977 LeuA_rel 2-isopropyl 51.8 2E+02 0.0043 28.4 11.1 65 44-109 125-197 (526)
153 PRK04923 ribose-phosphate pyro 51.4 2E+02 0.0042 26.4 12.8 132 5-140 33-194 (319)
154 TIGR02015 BchY chlorophyllide 51.1 75 0.0016 30.2 8.0 29 103-140 349-377 (422)
155 PRK03673 hypothetical protein; 50.3 2E+02 0.0043 27.3 10.6 71 72-146 27-97 (396)
156 PLN02321 2-isopropylmalate syn 50.2 1.8E+02 0.0038 29.5 10.6 72 68-140 242-316 (632)
157 COG0462 PrsA Phosphoribosylpyr 49.9 2.1E+02 0.0046 26.3 15.0 134 6-147 32-196 (314)
158 PF02670 DXP_reductoisom: 1-de 49.9 70 0.0015 25.4 6.4 89 39-135 11-113 (129)
159 PRK08591 acetyl-CoA carboxylas 49.8 60 0.0013 30.7 7.1 71 40-117 12-82 (451)
160 PRK08862 short chain dehydroge 49.8 1.6E+02 0.0035 24.9 9.4 73 41-117 17-91 (227)
161 TIGR00200 cinA_nterm competenc 49.5 2E+02 0.0044 27.4 10.5 67 73-143 27-93 (413)
162 PRK12344 putative alpha-isopro 49.4 1.8E+02 0.0039 28.6 10.4 70 39-109 124-201 (524)
163 TIGR01133 murG undecaprenyldip 49.2 1.1E+02 0.0024 27.1 8.5 89 41-140 16-117 (348)
164 TIGR02667 moaB_proteo molybden 48.8 1.5E+02 0.0032 24.2 10.1 77 57-135 6-89 (163)
165 PRK00934 ribose-phosphate pyro 48.8 41 0.00088 30.2 5.5 45 43-88 221-265 (285)
166 PF02698 DUF218: DUF218 domain 48.5 50 0.0011 26.1 5.5 109 34-148 17-133 (155)
167 PF05368 NmrA: NmrA-like famil 48.5 1.4E+02 0.0031 24.9 8.7 71 46-122 37-107 (233)
168 PF13579 Glyco_trans_4_4: Glyc 48.3 15 0.00033 28.0 2.3 95 40-145 5-105 (160)
169 TIGR00715 precor6x_red precorr 48.2 61 0.0013 28.7 6.4 88 42-143 12-99 (256)
170 COG2197 CitB Response regulato 48.2 1.1E+02 0.0024 26.0 7.9 60 40-105 59-118 (211)
171 cd01980 Chlide_reductase_Y Chl 48.2 77 0.0017 29.9 7.5 29 103-140 344-372 (416)
172 PRK08558 adenine phosphoribosy 48.1 22 0.00047 31.2 3.5 40 97-140 99-138 (238)
173 TIGR00661 MJ1255 conserved hyp 47.6 29 0.00063 31.2 4.4 33 102-141 86-118 (321)
174 TIGR00032 argG argininosuccina 47.3 87 0.0019 29.7 7.6 68 55-122 23-119 (394)
175 COG2805 PilT Tfp pilus assembl 47.3 18 0.00039 33.3 2.9 49 78-128 152-216 (353)
176 PF01903 CbiX: CbiX; InterPro 47.0 52 0.0011 24.2 5.1 49 38-87 8-58 (105)
177 cd07939 DRE_TIM_NifV Streptomy 46.8 2E+02 0.0043 25.1 11.5 63 68-133 141-203 (259)
178 PRK03670 competence damage-ind 46.8 2.1E+02 0.0045 25.3 11.1 67 73-144 27-95 (252)
179 TIGR00973 leuA_bact 2-isopropy 46.8 2.6E+02 0.0057 27.2 11.1 85 45-134 121-215 (494)
180 PRK14042 pyruvate carboxylase 46.7 2.4E+02 0.0053 28.3 10.9 101 32-138 116-224 (596)
181 COG1691 NCAIR mutase (PurE)-re 46.6 1.7E+02 0.0037 25.8 8.6 88 54-149 116-208 (254)
182 PLN00200 argininosuccinate syn 46.5 1E+02 0.0022 29.4 7.9 73 48-121 24-125 (404)
183 TIGR00639 PurN phosphoribosylg 46.5 1.8E+02 0.0038 24.5 9.0 61 55-117 27-87 (190)
184 PRK09517 multifunctional thiam 46.3 1.2E+02 0.0025 31.3 8.9 109 37-149 149-282 (755)
185 PRK07831 short chain dehydroge 46.3 1.9E+02 0.004 24.6 9.8 73 42-117 31-105 (262)
186 PRK08444 hypothetical protein; 46.3 81 0.0018 29.3 7.2 75 41-116 28-133 (353)
187 cd01973 Nitrogenase_VFe_beta_l 46.2 1.4E+02 0.003 28.7 9.0 30 102-140 372-403 (454)
188 TIGR01381 E1_like_apg7 E1-like 45.8 1.4E+02 0.003 30.3 9.1 96 55-158 338-490 (664)
189 PRK05749 3-deoxy-D-manno-octul 45.6 1.2E+02 0.0025 28.2 8.3 88 40-140 64-151 (425)
190 TIGR00514 accC acetyl-CoA carb 45.5 67 0.0014 30.5 6.7 69 40-117 12-82 (449)
191 PRK13111 trpA tryptophan synth 45.2 1.8E+02 0.0039 25.7 9.0 72 43-119 77-153 (258)
192 PRK08340 glucose-1-dehydrogena 45.2 1.6E+02 0.0036 25.0 8.7 71 42-117 13-84 (259)
193 PF13684 Dak1_2: Dihydroxyacet 45.0 1.2E+02 0.0026 27.7 8.0 59 67-136 130-188 (313)
194 TIGR01279 DPOR_bchN light-inde 45.0 1.2E+02 0.0027 28.5 8.3 18 100-117 334-351 (407)
195 TIGR02931 anfK_nitrog Fe-only 44.8 1.7E+02 0.0037 28.1 9.4 31 101-140 378-410 (461)
196 PF10686 DUF2493: Protein of u 44.7 99 0.0021 21.8 5.9 56 84-141 6-62 (71)
197 TIGR00315 cdhB CO dehydrogenas 44.7 27 0.00058 28.9 3.4 46 100-145 19-64 (162)
198 cd03812 GT1_CapH_like This fam 44.6 2.2E+02 0.0047 24.9 9.9 94 38-140 14-107 (358)
199 PRK00843 egsA NAD(P)-dependent 44.4 1.2E+02 0.0027 27.8 8.1 83 95-183 73-157 (350)
200 PRK05370 argininosuccinate syn 44.4 3E+02 0.0066 26.6 11.1 89 46-138 28-149 (447)
201 PRK07109 short chain dehydroge 44.3 1.9E+02 0.0042 26.1 9.3 73 41-117 20-93 (334)
202 PRK08223 hypothetical protein; 44.3 1.6E+02 0.0034 26.7 8.5 83 56-142 28-150 (287)
203 PLN03228 methylthioalkylmalate 44.2 3E+02 0.0066 27.0 11.0 66 68-134 241-308 (503)
204 COG0119 LeuA Isopropylmalate/h 44.0 2.9E+02 0.0063 26.3 11.0 98 41-140 117-220 (409)
205 COG1540 Uncharacterized protei 43.9 31 0.00067 30.4 3.7 46 94-145 122-167 (252)
206 cd08162 MPP_PhoA_N Synechococc 43.7 47 0.001 30.2 5.1 46 69-119 197-242 (313)
207 PF00205 TPP_enzyme_M: Thiamin 43.6 17 0.00036 28.4 1.9 46 100-145 3-48 (137)
208 PF02844 GARS_N: Phosphoribosy 43.5 55 0.0012 24.8 4.7 60 60-119 3-72 (100)
209 TIGR02932 vnfK_nitrog V-contai 43.4 2.1E+02 0.0045 27.5 9.7 31 101-140 375-406 (457)
210 PRK09417 mogA molybdenum cofac 43.4 2E+02 0.0044 24.3 9.8 49 93-141 50-98 (193)
211 COG0159 TrpA Tryptophan syntha 43.4 2.1E+02 0.0046 25.6 9.0 72 43-119 82-157 (265)
212 TIGR00109 hemH ferrochelatase. 43.3 1.5E+02 0.0033 27.0 8.4 83 36-119 70-163 (322)
213 PRK10916 ADP-heptose:LPS hepto 43.2 2.1E+02 0.0045 25.9 9.4 89 41-139 16-104 (348)
214 cd00886 MogA_MoaB MogA_MoaB fa 43.0 1.7E+02 0.0037 23.3 9.7 65 71-137 24-89 (152)
215 PRK14476 nitrogenase molybdenu 42.9 1.6E+02 0.0035 28.2 8.9 67 59-140 314-393 (455)
216 PRK09213 pur operon repressor; 42.9 33 0.00071 30.8 3.9 105 30-140 35-157 (271)
217 PF00106 adh_short: short chai 42.8 1.6E+02 0.0034 22.9 9.1 74 42-119 13-90 (167)
218 PF13561 adh_short_C2: Enoyl-( 42.7 1.6E+02 0.0034 24.8 8.1 69 43-117 10-81 (241)
219 TIGR01504 glyox_carbo_lig glyo 42.6 31 0.00068 34.1 4.1 53 93-146 188-240 (588)
220 PRK00945 acetyl-CoA decarbonyl 42.6 32 0.0007 28.7 3.6 46 100-145 26-72 (171)
221 PF07302 AroM: AroM protein; 42.3 54 0.0012 28.6 5.0 50 34-85 130-184 (221)
222 TIGR02329 propionate_PrpR prop 42.3 2.2E+02 0.0048 28.0 9.8 87 34-140 80-167 (526)
223 TIGR01426 MGT glycosyltransfer 42.3 36 0.00078 31.3 4.3 37 101-143 84-120 (392)
224 COG1058 CinA Predicted nucleot 42.3 2.5E+02 0.0054 25.0 10.1 71 68-146 23-97 (255)
225 cd06337 PBP1_ABC_ligand_bindin 42.2 81 0.0017 28.6 6.5 57 83-142 43-99 (357)
226 TIGR02990 ectoine_eutA ectoine 42.1 1.1E+02 0.0023 26.9 6.9 86 56-144 121-214 (239)
227 PRK05647 purN phosphoribosylgl 42.0 2.1E+02 0.0046 24.2 8.9 74 40-117 15-88 (200)
228 TIGR00615 recR recombination p 41.9 1.9E+02 0.0041 24.7 8.1 69 34-108 84-162 (195)
229 PRK09186 flagellin modificatio 41.9 2.1E+02 0.0045 24.0 9.2 73 42-117 17-91 (256)
230 COG2242 CobL Precorrin-6B meth 41.8 1.2E+02 0.0026 25.8 6.9 81 54-148 57-140 (187)
231 COG0589 UspA Universal stress 41.8 1.5E+02 0.0033 22.3 9.3 99 35-139 15-147 (154)
232 PRK02842 light-independent pro 41.3 1.3E+02 0.0029 28.4 8.0 18 100-117 351-368 (427)
233 TIGR01743 purR_Bsub pur operon 41.0 35 0.00076 30.6 3.8 105 30-140 33-155 (268)
234 cd07948 DRE_TIM_HCS Saccharomy 40.8 2.6E+02 0.0056 24.7 10.9 92 43-138 114-211 (262)
235 cd03415 CbiX_CbiC Archaeal sir 40.7 1.6E+02 0.0034 23.1 7.1 49 38-87 15-65 (125)
236 TIGR00640 acid_CoA_mut_C methy 40.7 1.4E+02 0.0031 23.5 6.9 57 42-104 70-126 (132)
237 PF13528 Glyco_trans_1_3: Glyc 40.5 52 0.0011 29.0 4.9 37 99-142 84-120 (318)
238 PF01488 Shikimate_DH: Shikima 40.3 86 0.0019 24.5 5.6 33 54-87 11-43 (135)
239 PRK04527 argininosuccinate syn 40.3 1.3E+02 0.0029 28.5 7.7 91 55-146 26-146 (400)
240 PRK00979 tetrahydromethanopter 40.3 2.4E+02 0.0052 25.9 9.0 61 29-89 95-156 (308)
241 PRK15062 hydrogenase isoenzyme 40.1 1.8E+02 0.0039 27.3 8.3 91 40-140 69-184 (364)
242 PRK07418 acetolactate synthase 40.0 37 0.00081 33.7 4.2 51 93-145 210-261 (616)
243 PRK06194 hypothetical protein; 39.8 2.5E+02 0.0053 24.2 9.6 73 42-118 19-92 (287)
244 PRK02304 adenine phosphoribosy 39.7 43 0.00094 27.5 3.9 44 93-140 32-78 (175)
245 PRK00455 pyrE orotate phosphor 39.5 58 0.0012 27.5 4.7 42 95-140 48-91 (202)
246 KOG1198 Zinc-binding oxidoredu 39.3 78 0.0017 29.3 5.9 6 109-114 225-230 (347)
247 PRK01372 ddl D-alanine--D-alan 39.3 1.9E+02 0.004 25.5 8.3 17 126-142 100-116 (304)
248 PRK14569 D-alanyl-alanine synt 38.7 1.5E+02 0.0032 26.5 7.5 31 109-140 56-86 (296)
249 PRK06139 short chain dehydroge 38.7 2.7E+02 0.0059 25.2 9.4 73 41-117 19-92 (330)
250 TIGR02483 PFK_mixed phosphofru 38.5 3.2E+02 0.0069 25.1 11.3 65 57-123 163-229 (324)
251 cd00419 Ferrochelatase_C Ferro 38.4 1.1E+02 0.0025 24.1 6.0 52 35-87 36-98 (135)
252 TIGR00696 wecB_tagA_cpsF bacte 38.3 2.3E+02 0.005 23.5 10.1 97 32-139 28-128 (177)
253 PRK13670 hypothetical protein; 38.3 2.1E+02 0.0045 27.0 8.7 78 39-119 17-104 (388)
254 cd03785 GT1_MurG MurG is an N- 38.3 2.3E+02 0.0051 25.0 8.8 92 40-142 14-118 (350)
255 PRK07677 short chain dehydroge 38.2 2.4E+02 0.0053 23.7 9.4 70 43-116 15-85 (252)
256 PF13380 CoA_binding_2: CoA bi 38.2 53 0.0011 25.2 4.0 54 56-118 56-109 (116)
257 PRK04180 pyridoxal biosynthesi 38.1 86 0.0019 28.5 5.8 73 37-113 189-263 (293)
258 PRK05867 short chain dehydroge 38.1 2.5E+02 0.0053 23.7 9.7 73 41-117 21-94 (253)
259 TIGR02195 heptsyl_trn_II lipop 38.0 2.8E+02 0.006 24.8 9.3 88 42-139 16-103 (334)
260 PF00764 Arginosuc_synth: Argi 37.8 1.9E+02 0.004 27.5 8.2 89 47-138 15-132 (388)
261 cd07406 MPP_CG11883_N Drosophi 37.6 75 0.0016 27.7 5.4 43 71-119 163-205 (257)
262 PRK07206 hypothetical protein; 37.5 2.2E+02 0.0049 26.3 8.9 40 99-142 60-99 (416)
263 PRK12880 3-oxoacyl-(acyl carri 37.5 1.1E+02 0.0023 28.3 6.6 62 77-139 45-111 (353)
264 PLN02735 carbamoyl-phosphate s 37.3 72 0.0015 34.4 6.0 70 32-117 584-657 (1102)
265 PRK07478 short chain dehydroge 37.2 2.5E+02 0.0055 23.6 9.4 72 42-117 19-91 (254)
266 PRK02277 orotate phosphoribosy 37.2 1.2E+02 0.0026 25.6 6.4 90 41-141 6-113 (200)
267 COG2205 KdpD Osmosensitive K+ 37.2 1.6E+02 0.0034 30.8 8.0 79 36-122 258-347 (890)
268 PRK06725 acetolactate synthase 37.0 43 0.00094 33.0 4.1 51 93-145 200-251 (570)
269 PRK00923 sirohydrochlorin coba 36.7 1.9E+02 0.0041 22.1 7.4 45 43-87 21-67 (126)
270 PRK08527 acetolactate synthase 36.4 47 0.001 32.6 4.2 53 93-146 189-241 (563)
271 PRK05963 3-oxoacyl-(acyl carri 36.3 1.4E+02 0.003 26.8 7.0 61 77-138 37-102 (326)
272 cd01483 E1_enzyme_family Super 36.2 1.3E+02 0.0028 23.4 6.1 21 69-89 12-32 (143)
273 PRK00549 competence damage-ind 36.2 3.8E+02 0.0083 25.4 10.5 68 73-144 27-94 (414)
274 PF03746 LamB_YcsF: LamB/YcsF 36.0 64 0.0014 28.5 4.5 45 93-143 119-163 (242)
275 PRK13947 shikimate kinase; Pro 36.0 23 0.00051 28.4 1.7 29 111-141 3-31 (171)
276 PF01171 ATP_bind_3: PP-loop f 35.9 2.4E+02 0.0052 23.0 9.1 84 37-121 10-108 (182)
277 cd01972 Nitrogenase_VnfE_like 35.8 3.3E+02 0.0073 25.6 9.8 81 55-142 292-399 (426)
278 PRK13810 orotate phosphoribosy 35.7 53 0.0012 27.6 3.9 60 77-140 37-100 (187)
279 PRK12833 acetyl-CoA carboxylas 35.6 2.2E+02 0.0047 27.3 8.6 72 39-117 14-85 (467)
280 cd07409 MPP_CD73_N CD73 ecto-5 35.4 76 0.0016 28.2 5.1 45 69-119 172-216 (281)
281 PF00762 Ferrochelatase: Ferro 35.4 1.3E+02 0.0027 27.6 6.6 81 36-117 65-156 (316)
282 PRK00676 hemA glutamyl-tRNA re 35.3 1.7E+02 0.0036 27.2 7.4 59 58-118 175-235 (338)
283 PLN02331 phosphoribosylglycina 35.2 2.3E+02 0.0051 24.2 7.9 75 39-117 12-86 (207)
284 PRK07102 short chain dehydroge 35.1 2.7E+02 0.0058 23.3 8.9 71 42-117 14-84 (243)
285 cd07388 MPP_Tt1561 Thermus the 35.0 93 0.002 27.0 5.4 43 75-117 142-187 (224)
286 TIGR03492 conserved hypothetic 35.0 1.5E+02 0.0032 27.8 7.1 93 38-141 9-118 (396)
287 PRK14071 6-phosphofructokinase 35.0 3.8E+02 0.0082 25.0 10.8 63 57-121 177-241 (360)
288 cd07405 MPP_UshA_N Escherichia 34.9 79 0.0017 28.2 5.1 49 71-119 165-219 (285)
289 PRK08463 acetyl-CoA carboxylas 34.8 1.7E+02 0.0037 28.1 7.7 71 39-117 11-81 (478)
290 PRK13011 formyltetrahydrofolat 34.6 3.2E+02 0.0069 24.6 9.0 21 97-117 153-173 (286)
291 PRK13820 argininosuccinate syn 34.5 1.5E+02 0.0033 28.1 7.1 72 50-123 23-123 (394)
292 cd02071 MM_CoA_mut_B12_BD meth 34.4 78 0.0017 24.3 4.4 14 72-85 95-108 (122)
293 PRK06027 purU formyltetrahydro 34.3 2.7E+02 0.0059 25.0 8.5 20 98-117 154-173 (286)
294 cd06367 PBP1_iGluR_NMDA N-term 34.3 69 0.0015 29.0 4.7 53 91-143 45-97 (362)
295 TIGR02660 nifV_homocitr homoci 34.2 3.8E+02 0.0083 24.8 11.6 93 43-139 115-213 (365)
296 cd01999 Argininosuccinate_Synt 34.1 2.8E+02 0.0061 26.2 8.8 74 49-123 18-120 (385)
297 PLN02446 (5-phosphoribosyl)-5- 34.0 1.2E+02 0.0025 27.2 5.9 45 69-117 94-141 (262)
298 PRK10834 vancomycin high tempe 33.8 1.9E+02 0.0041 25.5 7.1 99 34-139 61-164 (239)
299 PRK00509 argininosuccinate syn 33.7 2.5E+02 0.0054 26.7 8.4 73 49-122 22-122 (399)
300 KOG3076 5'-phosphoribosylglyci 33.5 2.2E+02 0.0047 24.4 7.1 72 39-117 19-95 (206)
301 PF04273 DUF442: Putative phos 33.3 1.1E+02 0.0024 23.4 5.1 45 73-118 51-96 (110)
302 COG4567 Response regulator con 33.2 1.8E+02 0.0039 24.2 6.4 60 76-149 4-64 (182)
303 KOG0781 Signal recognition par 33.1 1.2E+02 0.0025 29.9 6.0 50 68-118 455-505 (587)
304 PRK13946 shikimate kinase; Pro 32.7 28 0.00061 28.7 1.7 29 110-140 11-39 (184)
305 cd03784 GT1_Gtf_like This fami 32.6 57 0.0012 29.9 3.9 38 102-145 97-134 (401)
306 PRK07832 short chain dehydroge 32.6 3.2E+02 0.0069 23.4 9.1 73 42-117 13-86 (272)
307 cd07410 MPP_CpdB_N Escherichia 32.5 98 0.0021 27.2 5.3 47 71-119 175-228 (277)
308 PRK05855 short chain dehydroge 32.5 3.3E+02 0.0072 25.9 9.4 25 93-117 375-400 (582)
309 COG0276 HemH Protoheme ferro-l 32.4 2.6E+02 0.0056 25.8 8.0 45 44-88 77-124 (320)
310 TIGR02482 PFKA_ATP 6-phosphofr 32.4 3.9E+02 0.0084 24.3 10.9 60 57-118 161-222 (301)
311 TIGR01390 CycNucDiestase 2',3' 32.2 65 0.0014 32.3 4.5 54 68-121 184-240 (626)
312 PRK03692 putative UDP-N-acetyl 32.2 3.5E+02 0.0076 23.7 10.1 97 34-140 87-186 (243)
313 TIGR01090 apt adenine phosphor 32.1 66 0.0014 26.3 3.9 41 96-140 33-73 (169)
314 PF13439 Glyco_transf_4: Glyco 32.0 33 0.00072 26.5 2.0 90 35-141 11-106 (177)
315 KOG3332 N-acetylglucosaminyl p 31.9 1.4E+02 0.003 26.3 5.8 48 68-115 86-142 (247)
316 TIGR03123 one_C_unchar_1 proba 31.9 69 0.0015 29.5 4.2 41 97-142 265-305 (318)
317 PRK12569 hypothetical protein; 31.9 95 0.0021 27.5 4.9 56 82-143 108-168 (245)
318 PRK00207 sulfur transfer compl 31.9 1.6E+02 0.0035 23.0 5.9 106 1-146 1-107 (128)
319 PRK14572 D-alanyl-alanine synt 31.9 1.1E+02 0.0024 28.0 5.6 35 106-141 85-119 (347)
320 PRK12435 ferrochelatase; Provi 31.8 2.4E+02 0.0053 25.6 7.8 30 59-88 83-112 (311)
321 TIGR03590 PseG pseudaminic aci 31.7 3.6E+02 0.0078 23.7 9.1 70 42-118 20-89 (279)
322 PRK06372 translation initiatio 31.6 3.7E+02 0.008 23.9 10.8 107 35-149 70-198 (253)
323 PRK07199 phosphoribosylpyropho 31.5 1.9E+02 0.004 26.3 7.0 66 42-108 227-293 (301)
324 COG2138 Sirohydrochlorin ferro 31.5 3.4E+02 0.0073 23.9 8.4 107 34-140 13-156 (245)
325 TIGR01362 KDO8P_synth 3-deoxy- 31.4 3E+02 0.0065 24.6 8.0 79 40-119 59-154 (258)
326 cd03522 MoeA_like MoeA_like. T 31.4 4.1E+02 0.0089 24.3 11.6 95 39-137 135-246 (312)
327 COG1646 Predicted phosphate-bi 31.4 1.1E+02 0.0023 27.1 5.0 79 36-119 145-223 (240)
328 PF02608 Bmp: Basic membrane p 31.2 2.6E+02 0.0056 25.0 7.9 74 37-119 16-95 (306)
329 PRK12815 carB carbamoyl phosph 31.2 82 0.0018 33.7 5.2 65 37-116 573-637 (1068)
330 PRK14974 cell division protein 31.1 3.8E+02 0.0083 24.7 9.0 16 72-88 215-230 (336)
331 PF14582 Metallophos_3: Metall 31.1 35 0.00076 30.1 2.1 24 95-118 192-215 (255)
332 PLN02605 monogalactosyldiacylg 31.1 73 0.0016 29.3 4.4 46 97-146 88-139 (382)
333 PF02142 MGS: MGS-like domain 31.0 40 0.00087 24.7 2.2 89 41-141 1-95 (95)
334 cd04946 GT1_AmsK_like This fam 30.9 4.3E+02 0.0094 24.4 11.1 91 41-141 247-339 (407)
335 cd06338 PBP1_ABC_ligand_bindin 30.9 1.4E+02 0.0031 26.4 6.1 52 89-143 51-102 (345)
336 cd01541 PBP1_AraR Ligand-bindi 30.9 3.3E+02 0.007 23.0 10.5 81 34-118 9-92 (273)
337 PF13941 MutL: MutL protein 30.8 2.7E+02 0.0058 27.0 8.1 74 57-138 78-152 (457)
338 PRK12475 thiamine/molybdopteri 30.7 2.4E+02 0.0052 26.0 7.7 84 56-142 25-147 (338)
339 COG3150 Predicted esterase [Ge 30.6 2.6E+02 0.0056 23.7 7.0 62 75-141 24-86 (191)
340 CHL00144 odpB pyruvate dehydro 30.3 2.8E+02 0.006 25.4 8.0 73 55-135 201-276 (327)
341 cd07408 MPP_SA0022_N Staphyloc 30.3 1E+02 0.0022 26.9 4.9 47 72-120 164-212 (257)
342 PRK08654 pyruvate carboxylase 30.2 2.1E+02 0.0045 27.9 7.5 72 39-117 11-82 (499)
343 TIGR03853 matur_matur probable 30.2 33 0.00072 24.9 1.5 16 236-251 46-61 (77)
344 PF02254 TrkA_N: TrkA-N domain 30.2 1.8E+02 0.0039 21.4 5.8 7 78-84 108-114 (116)
345 TIGR01367 pyrE_Therm orotate p 30.2 1.1E+02 0.0024 25.6 5.0 42 95-140 42-85 (187)
346 TIGR02955 TMAO_TorT TMAO reduc 30.0 3.7E+02 0.008 23.3 10.6 75 34-115 9-87 (295)
347 PRK05406 LamB/YcsF family prot 30.0 1.1E+02 0.0024 27.1 5.1 56 82-143 105-165 (246)
348 TIGR01369 CPSaseII_lrg carbamo 29.9 1.4E+02 0.0029 32.0 6.6 65 37-116 572-636 (1050)
349 cd01486 Apg7 Apg7 is an E1-lik 29.8 2.8E+02 0.0061 25.4 7.8 35 110-146 109-143 (307)
350 PRK05597 molybdopterin biosynt 29.8 3E+02 0.0066 25.4 8.2 85 56-143 29-150 (355)
351 PF10128 OpcA_G6PD_assem: Gluc 29.7 4E+02 0.0087 23.7 10.2 89 55-144 71-192 (270)
352 cd01455 vWA_F11C1-5a_type Von 29.6 3.5E+02 0.0076 22.9 8.0 50 32-88 125-174 (191)
353 COG0353 RecR Recombinational D 29.4 3E+02 0.0064 23.6 7.3 75 34-109 85-164 (198)
354 cd00762 NAD_bind_malic_enz NAD 29.3 3.4E+02 0.0073 24.2 8.0 100 40-140 9-137 (254)
355 PF13189 Cytidylate_kin2: Cyti 29.3 30 0.00065 28.6 1.3 29 113-142 2-30 (179)
356 PRK12560 adenine phosphoribosy 29.2 84 0.0018 26.3 4.1 39 97-140 40-78 (187)
357 PLN02683 pyruvate dehydrogenas 29.2 2.4E+02 0.0053 26.1 7.5 72 55-135 228-303 (356)
358 PRK03731 aroL shikimate kinase 29.2 35 0.00076 27.4 1.7 28 112-141 5-32 (171)
359 PRK08155 acetolactate synthase 29.1 75 0.0016 31.1 4.3 52 93-145 197-248 (564)
360 PLN02371 phosphoglucosamine mu 29.1 3.3E+02 0.0071 27.1 8.8 44 92-140 350-394 (583)
361 cd01492 Aos1_SUMO Ubiquitin ac 29.0 3.4E+02 0.0074 22.7 7.8 57 56-113 22-92 (197)
362 PRK12879 3-oxoacyl-(acyl carri 28.8 2.6E+02 0.0056 24.8 7.5 60 78-138 39-103 (325)
363 TIGR00262 trpA tryptophan synt 28.8 4E+02 0.0088 23.4 9.3 72 43-119 75-151 (256)
364 PTZ00187 succinyl-CoA syntheta 28.8 2.9E+02 0.0063 25.4 7.7 64 54-121 87-150 (317)
365 cd01966 Nitrogenase_NifN_1 Nit 28.7 4.4E+02 0.0096 24.9 9.3 67 59-140 303-382 (417)
366 PRK09653 eutD phosphotransacet 28.6 4.4E+02 0.0095 24.0 9.0 39 36-80 22-61 (324)
367 cd01994 Alpha_ANH_like_IV This 28.6 3.5E+02 0.0076 22.6 9.2 83 55-141 23-119 (194)
368 TIGR02655 circ_KaiC circadian 28.5 4.6E+02 0.01 25.3 9.5 73 42-117 280-361 (484)
369 PRK06172 short chain dehydroge 28.5 3.5E+02 0.0077 22.6 9.3 73 42-118 20-93 (253)
370 PF10678 DUF2492: Protein of u 28.4 37 0.00081 24.7 1.5 16 236-251 48-63 (78)
371 cd08291 ETR_like_1 2-enoyl thi 28.4 2E+02 0.0043 25.4 6.6 32 55-87 143-175 (324)
372 COG1323 Predicted nucleotidylt 28.4 3.1E+02 0.0067 25.7 7.9 86 34-122 9-107 (358)
373 COG0196 RibF FAD synthase [Coe 28.3 4.6E+02 0.01 23.9 11.5 94 40-137 32-143 (304)
374 PF00862 Sucrose_synth: Sucros 28.2 36 0.00078 33.4 1.8 49 96-148 385-436 (550)
375 PRK06181 short chain dehydroge 28.2 3.7E+02 0.0079 22.7 9.6 72 42-117 14-86 (263)
376 TIGR01205 D_ala_D_alaTIGR D-al 28.0 3.5E+02 0.0076 23.8 8.2 16 126-141 107-122 (315)
377 PRK05876 short chain dehydroge 28.0 4E+02 0.0086 23.1 9.0 71 43-117 20-91 (275)
378 COG0373 HemA Glutamyl-tRNA red 28.0 2.4E+02 0.0051 27.0 7.2 75 41-119 164-248 (414)
379 PRK07666 fabG 3-ketoacyl-(acyl 27.9 3.5E+02 0.0076 22.4 9.8 73 42-118 20-93 (239)
380 cd06295 PBP1_CelR Ligand bindi 27.8 3.7E+02 0.008 22.6 10.8 52 35-87 21-72 (275)
381 PRK00035 hemH ferrochelatase; 27.7 3.4E+02 0.0075 24.5 8.2 30 59-88 98-127 (333)
382 PLN00142 sucrose synthase 27.5 81 0.0018 32.8 4.3 49 95-147 391-442 (815)
383 PRK09420 cpdB bifunctional 2', 27.5 91 0.002 31.5 4.6 53 68-120 207-262 (649)
384 PF11548 Receptor_IA-2: Protei 27.1 63 0.0014 24.2 2.5 45 109-156 3-48 (91)
385 cd03412 CbiK_N Anaerobic cobal 27.1 2.2E+02 0.0049 22.0 5.9 72 44-117 21-107 (127)
386 TIGR00075 hypD hydrogenase exp 26.9 4.9E+02 0.011 24.5 8.9 133 31-176 118-257 (369)
387 cd03416 CbiX_SirB_N Sirohydroc 26.9 2.5E+02 0.0054 20.3 7.2 50 38-87 14-65 (101)
388 cd06274 PBP1_FruR Ligand bindi 26.8 3.8E+02 0.0082 22.4 10.0 51 36-87 11-63 (264)
389 PRK05858 hypothetical protein; 26.7 77 0.0017 30.9 3.9 53 92-145 188-240 (542)
390 TIGR01319 glmL_fam conserved h 26.6 6.1E+02 0.013 24.7 10.2 74 55-136 72-146 (463)
391 PRK00915 2-isopropylmalate syn 26.5 6.2E+02 0.013 24.7 11.4 66 68-134 151-218 (513)
392 TIGR02199 rfaE_dom_II rfaE bif 26.4 3.3E+02 0.0071 21.5 8.8 71 34-118 22-105 (144)
393 COG0324 MiaA tRNA delta(2)-iso 26.4 45 0.00098 30.5 2.0 28 111-140 5-32 (308)
394 cd01988 Na_H_Antiporter_C The 26.3 2.7E+02 0.0058 20.5 7.5 76 39-115 54-131 (132)
395 PRK13010 purU formyltetrahydro 26.2 3.9E+02 0.0084 24.1 8.0 19 99-117 159-177 (289)
396 cd08177 MAR Maleylacetate redu 26.1 4.8E+02 0.01 23.7 8.8 102 94-201 62-168 (337)
397 PRK13940 glutamyl-tRNA reducta 26.1 2.9E+02 0.0062 26.3 7.5 45 41-87 167-212 (414)
398 cd06279 PBP1_LacI_like_3 Ligan 26.0 4.2E+02 0.009 22.6 10.5 91 35-135 15-111 (283)
399 PRK02122 glucosamine-6-phospha 26.0 5.5E+02 0.012 26.1 9.8 49 74-122 477-535 (652)
400 PRK06217 hypothetical protein; 26.0 40 0.00088 27.6 1.6 27 112-140 4-30 (183)
401 PRK07062 short chain dehydroge 26.0 4.1E+02 0.0088 22.5 9.3 72 43-117 22-95 (265)
402 PLN02591 tryptophan synthase 25.9 4.6E+02 0.01 23.1 8.7 47 68-119 95-141 (250)
403 PRK14072 6-phosphofructokinase 25.8 3.8E+02 0.0082 25.5 8.2 62 57-120 181-248 (416)
404 TIGR01369 CPSaseII_lrg carbamo 25.8 2.2E+02 0.0048 30.4 7.3 67 36-117 23-89 (1050)
405 PRK08883 ribulose-phosphate 3- 25.7 4.3E+02 0.0093 22.7 9.5 72 34-107 145-217 (220)
406 PRK09922 UDP-D-galactose:(gluc 25.7 2.5E+02 0.0054 25.2 6.9 91 39-139 17-110 (359)
407 PF07302 AroM: AroM protein; 25.6 4.5E+02 0.0097 22.9 9.3 82 55-140 125-206 (221)
408 PRK08945 putative oxoacyl-(acy 25.6 4E+02 0.0086 22.2 9.2 76 40-117 23-100 (247)
409 COG4398 Uncharacterized protei 25.5 1.3E+02 0.0029 27.5 4.8 49 96-144 20-72 (389)
410 PF13419 HAD_2: Haloacid dehal 25.5 3.1E+02 0.0067 20.9 7.4 86 42-140 82-174 (176)
411 PF13793 Pribosyltran_N: N-ter 25.5 1.2E+02 0.0025 23.5 3.9 24 113-141 3-26 (116)
412 PRK00934 ribose-phosphate pyro 25.3 4.9E+02 0.011 23.2 12.4 129 5-140 26-181 (285)
413 PF09837 DUF2064: Uncharacteri 25.3 2E+02 0.0044 22.3 5.3 45 69-118 50-96 (122)
414 PRK15452 putative protease; Pr 25.2 3.6E+02 0.0079 25.9 8.0 99 36-147 41-145 (443)
415 PF01177 Asp_Glu_race: Asp/Glu 25.1 71 0.0015 26.5 2.9 42 100-142 166-207 (216)
416 TIGR00655 PurU formyltetrahydr 24.8 5.1E+02 0.011 23.2 8.6 23 95-117 146-168 (280)
417 PRK10964 ADP-heptose:LPS hepto 24.8 4.9E+02 0.011 23.1 9.2 30 101-140 247-276 (322)
418 smart00854 PGA_cap Bacterial c 24.7 2.1E+02 0.0046 24.5 5.9 40 79-118 172-214 (239)
419 COG0214 SNZ1 Pyridoxine biosyn 24.7 1.8E+02 0.004 25.9 5.3 55 57-113 208-266 (296)
420 cd01979 Pchlide_reductase_N Pc 24.7 4E+02 0.0088 24.8 8.2 32 100-140 336-367 (396)
421 cd02039 cytidylyltransferase_l 24.7 3.1E+02 0.0067 20.7 8.8 80 38-122 14-105 (143)
422 KOG3347 Predicted nucleotide k 24.7 77 0.0017 26.4 2.9 32 107-140 5-36 (176)
423 PRK08762 molybdopterin biosynt 24.6 2.7E+02 0.0058 25.9 6.9 85 55-142 135-256 (376)
424 PRK07742 phosphate butyryltran 24.5 5.1E+02 0.011 23.3 8.6 75 37-119 23-100 (299)
425 PRK15062 hydrogenase isoenzyme 24.5 6E+02 0.013 23.9 9.4 134 31-177 112-252 (364)
426 TIGR02129 hisA_euk phosphoribo 24.5 4.3E+02 0.0093 23.5 7.8 16 70-85 88-103 (253)
427 cd06336 PBP1_ABC_ligand_bindin 24.5 1.9E+02 0.004 26.0 5.8 52 89-144 51-102 (347)
428 PRK03482 phosphoglycerate muta 24.5 75 0.0016 26.7 3.0 41 96-139 34-74 (215)
429 PRK08339 short chain dehydroge 24.4 4.5E+02 0.0098 22.5 9.0 71 42-117 21-93 (263)
430 cd06347 PBP1_ABC_ligand_bindin 24.3 1.5E+02 0.0033 25.9 5.0 53 89-144 47-99 (334)
431 PF13941 MutL: MutL protein 24.3 6.6E+02 0.014 24.4 10.0 86 41-136 88-175 (457)
432 PF05221 AdoHcyase: S-adenosyl 24.3 2E+02 0.0044 25.8 5.7 76 45-133 59-138 (268)
433 cd03414 CbiX_SirB_C Sirohydroc 24.2 3E+02 0.0066 20.4 7.1 49 39-87 16-66 (117)
434 PRK04182 cytidylate kinase; Pr 24.2 49 0.0011 26.4 1.7 28 112-141 3-30 (180)
435 cd03807 GT1_WbnK_like This fam 24.2 4.5E+02 0.0097 22.3 11.0 97 36-142 12-110 (365)
436 PRK14538 putative bifunctional 24.1 3E+02 0.0064 28.9 7.6 66 68-135 311-391 (838)
437 TIGR01319 glmL_fam conserved h 24.0 4.5E+02 0.0098 25.6 8.3 86 42-137 85-172 (463)
438 PRK00536 speE spermidine synth 24.0 2.6E+02 0.0056 24.9 6.4 30 59-90 75-104 (262)
439 TIGR01251 ribP_PPkin ribose-ph 23.9 2.1E+02 0.0047 25.8 6.0 66 41-107 225-296 (308)
440 PRK11475 DNA-binding transcrip 23.9 4.4E+02 0.0096 22.2 7.9 62 40-106 53-114 (207)
441 TIGR01530 nadN NAD pyrophospha 23.9 1.2E+02 0.0026 29.9 4.6 46 69-120 172-217 (550)
442 cd03802 GT1_AviGT4_like This f 23.8 1.8E+02 0.0038 25.2 5.4 97 36-145 19-116 (335)
443 PRK08190 bifunctional enoyl-Co 23.8 6.6E+02 0.014 24.2 11.2 79 33-119 180-260 (466)
444 cd06348 PBP1_ABC_ligand_bindin 23.8 1.8E+02 0.0038 25.9 5.5 51 89-142 47-97 (344)
445 KOG1205 Predicted dehydrogenas 23.7 5.1E+02 0.011 23.4 8.3 70 44-117 27-99 (282)
446 PRK06111 acetyl-CoA carboxylas 23.6 3.3E+02 0.0071 25.6 7.5 67 41-117 13-82 (450)
447 CHL00162 thiG thiamin biosynth 23.6 4.4E+02 0.0096 23.6 7.6 65 34-107 175-240 (267)
448 COG0703 AroK Shikimate kinase 23.6 72 0.0016 26.7 2.6 29 110-140 3-31 (172)
449 TIGR03217 4OH_2_O_val_ald 4-hy 23.5 5.8E+02 0.013 23.4 10.8 74 39-119 63-137 (333)
450 PRK05854 short chain dehydroge 23.5 5.2E+02 0.011 22.9 9.2 74 41-117 26-101 (313)
451 PLN02199 shikimate kinase 23.5 87 0.0019 28.6 3.3 108 25-140 14-131 (303)
452 COG0528 PyrH Uridylate kinase 23.5 3.4E+02 0.0075 23.9 6.8 36 109-144 124-161 (238)
453 PRK08277 D-mannonate oxidoredu 23.1 4.7E+02 0.01 22.3 9.3 73 41-117 22-95 (278)
454 PRK07878 molybdopterin biosynt 23.1 2.7E+02 0.0058 26.1 6.6 85 55-142 42-163 (392)
455 KOG0023 Alcohol dehydrogenase, 23.1 1.1E+02 0.0024 28.5 3.8 34 45-82 196-229 (360)
456 cd08294 leukotriene_B4_DH_like 23.0 3E+02 0.0064 24.0 6.7 17 70-87 159-175 (329)
457 PRK07370 enoyl-(acyl carrier p 23.0 4.8E+02 0.01 22.2 9.2 72 42-117 21-95 (258)
458 PRK07201 short chain dehydroge 22.9 6.1E+02 0.013 24.9 9.5 71 43-117 385-456 (657)
459 COG0742 N6-adenine-specific me 22.9 4.7E+02 0.01 22.1 7.6 33 54-89 43-75 (187)
460 TIGR02195 heptsyl_trn_II lipop 22.8 4.1E+02 0.0089 23.7 7.7 25 109-141 251-275 (334)
461 PRK00131 aroK shikimate kinase 22.8 59 0.0013 25.7 1.9 30 109-140 4-33 (175)
462 cd02067 B12-binding B12 bindin 22.8 3.3E+02 0.0071 20.3 10.5 75 54-137 26-103 (119)
463 PRK08703 short chain dehydroge 22.8 4.4E+02 0.0096 21.8 8.6 75 42-118 19-96 (239)
464 cd08173 Gro1PDH Sn-glycerol-1- 22.8 3.3E+02 0.0072 24.7 7.1 97 94-197 63-164 (339)
465 COG0062 Uncharacterized conser 22.7 1.1E+02 0.0024 26.3 3.6 39 98-137 33-77 (203)
466 cd00763 Bacterial_PFK Phosphof 22.7 5.9E+02 0.013 23.2 11.2 88 43-136 149-238 (317)
467 TIGR02712 urea_carbox urea car 22.7 3.4E+02 0.0074 29.7 8.0 72 39-117 10-81 (1201)
468 cd00464 SK Shikimate kinase (S 22.6 57 0.0012 25.3 1.8 27 112-140 2-28 (154)
469 PF13460 NAD_binding_10: NADH( 22.6 2.5E+02 0.0055 22.2 5.7 51 70-122 52-103 (183)
470 PRK02458 ribose-phosphate pyro 22.6 2.2E+02 0.0047 26.1 5.8 19 69-87 235-253 (323)
471 CHL00200 trpA tryptophan synth 22.5 5.5E+02 0.012 22.8 8.8 67 43-117 80-152 (263)
472 PRK07024 short chain dehydroge 22.5 4.7E+02 0.01 22.0 8.1 72 41-117 14-86 (257)
473 cd06359 PBP1_Nba_like Type I p 22.5 2E+02 0.0044 25.5 5.5 52 89-143 45-96 (333)
474 PRK09389 (R)-citramalate synth 22.4 7.2E+02 0.016 24.1 10.7 68 68-138 145-213 (488)
475 cd00830 KAS_III Ketoacyl-acyl 22.4 4E+02 0.0087 23.4 7.4 60 78-138 36-100 (320)
476 cd03789 GT1_LPS_heptosyltransf 22.3 5.1E+02 0.011 22.3 8.5 86 44-139 18-103 (279)
477 PRK13789 phosphoribosylamine-- 22.3 2.8E+02 0.0061 26.3 6.7 38 100-140 59-96 (426)
478 cd08186 Fe-ADH8 Iron-containin 22.2 2.3E+02 0.0051 26.3 6.0 59 72-135 47-107 (383)
479 COG1454 EutG Alcohol dehydroge 22.1 5.1E+02 0.011 24.4 8.2 40 94-138 71-112 (377)
480 PF06925 MGDG_synth: Monogalac 21.9 1.1E+02 0.0024 24.7 3.4 50 94-147 74-127 (169)
481 cd06340 PBP1_ABC_ligand_bindin 21.9 3.7E+02 0.008 24.0 7.2 51 89-142 50-100 (347)
482 TIGR03088 stp2 sugar transfera 21.9 5.7E+02 0.012 22.7 10.0 75 36-116 14-88 (374)
483 TIGR02201 heptsyl_trn_III lipo 21.8 5.8E+02 0.013 22.8 9.8 87 43-139 17-106 (344)
484 PF01764 Lipase_3: Lipase (cla 21.8 1.5E+02 0.0033 22.4 4.1 37 96-136 49-86 (140)
485 PRK11914 diacylglycerol kinase 21.8 4.8E+02 0.01 23.1 7.9 37 54-90 38-75 (306)
486 cd03089 PMM_PGM The phosphoman 21.8 6.2E+02 0.014 23.9 9.0 44 92-140 249-293 (443)
487 cd07381 MPP_CapA CapA and rela 21.7 2.7E+02 0.0058 23.8 5.9 47 71-118 167-216 (239)
488 PRK05784 phosphoribosylamine-- 21.7 3.6E+02 0.0079 26.2 7.4 19 100-118 60-78 (486)
489 COG2074 2-phosphoglycerate kin 21.6 1.9E+02 0.0041 26.2 4.9 46 96-142 74-120 (299)
490 cd00827 init_cond_enzymes "ini 21.6 2.5E+02 0.0055 24.7 6.0 42 97-138 52-98 (324)
491 PRK07814 short chain dehydroge 21.5 5E+02 0.011 22.0 9.4 72 42-117 23-95 (263)
492 PRK07411 hypothetical protein; 21.5 3.7E+02 0.0081 25.2 7.3 84 56-142 39-159 (390)
493 PRK11892 pyruvate dehydrogenas 21.4 3.9E+02 0.0084 25.9 7.5 73 55-135 340-415 (464)
494 PRK12743 oxidoreductase; Provi 21.4 5E+02 0.011 21.9 9.9 72 42-117 15-88 (256)
495 cd06281 PBP1_LacI_like_5 Ligan 21.3 4.9E+02 0.011 21.8 10.5 93 36-135 11-111 (269)
496 PRK09072 short chain dehydroge 21.3 5E+02 0.011 21.9 8.6 71 42-117 18-88 (263)
497 PRK03202 6-phosphofructokinase 21.3 6.4E+02 0.014 23.1 11.1 76 57-136 162-239 (320)
498 TIGR02706 P_butyryltrans phosp 21.2 4.1E+02 0.0088 23.9 7.2 76 36-119 20-97 (294)
499 TIGR01019 sucCoAalpha succinyl 21.2 3.7E+02 0.008 24.2 6.9 59 56-119 64-122 (286)
500 COG0826 Collagenase and relate 21.2 4.5E+02 0.0097 24.4 7.6 69 36-116 44-118 (347)
No 1
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=100.00 E-value=1e-65 Score=452.51 Aligned_cols=244 Identities=25% Similarity=0.368 Sum_probs=227.4
Q ss_pred CeEEEEEEeeccCCCceEEecCCCeEEccCCccCCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhH--HHHHHHHHC
Q 025565 1 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCV--DTLRTGLAM 78 (251)
Q Consensus 1 M~IvV~~K~Vpd~~~~~~~~~~~~~~~~~~~~~~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~--~~l~~~la~ 78 (251)
|||+||+|||||+. ++++++.+++++|++++++|||||++|||+|+||+|++.|++|++++|||++++ ..+|+|++|
T Consensus 1 M~IvVcvKqVPD~~-~~~~~~~~~~l~r~~~~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLAm 79 (256)
T PRK03359 1 MKIITCYKCVPDEQ-DIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSR 79 (256)
T ss_pred CEEEEEEEECcCCc-ceEEeCCCCeEEcCCCccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchhhHHHHHHHHHc
Confidence 99999999999986 899998888999999999999999999999999999843479999999998865 679999999
Q ss_pred CCCEEEEEeeCC--CCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEE-EecCCCeE
Q 025565 79 GADRGVHVEAAG--QLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVV-LDKEKQLA 155 (251)
Q Consensus 79 GaD~vi~v~~~~--~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~-~~~~~~~l 155 (251)
|||++|+++|+. ..|++++|++||+++++.+|||||||.+|+|++++|+||+||++||||++|+|.+++ ++ ++.+
T Consensus 80 GaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~l~~~~--~~~v 157 (256)
T PRK03359 80 GPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSKIISLT--DDTL 157 (256)
T ss_pred CCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEEEEEec--CCEE
Confidence 999999999774 579999999999999999999999999999999999999999999999999999994 67 8899
Q ss_pred EEEEEeCCeEEEEEECCCEEEEEeCCCCCCCCCChHHHHHhcCCCceeecCCccCCCCCCCeEEEEEeCCCCCcCeeEe-
Q 025565 156 MVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKYTPQELNVDVKSDLEVIQVTEPPKRKAGVIL- 234 (251)
Q Consensus 156 ~~~R~~~gG~~~~~~~~P~vvtv~~~~~~pr~p~l~~i~~A~k~~i~~~~~~dl~~~~~~~~~v~~~~~p~~~~~~~~~- 234 (251)
+++|..++|.+++++++|+|+||..++|+||||||++||+|+||||++|+++|||+++.+++++.++++|+.++++.++
T Consensus 158 ~v~r~~e~g~e~ve~~lPavvtV~~~~n~PR~psl~~i~~A~kk~i~~~~~~dlg~~~~~~~~~~~~~~p~~~~~~~~i~ 237 (256)
T PRK03359 158 TVERELEDEVETLSIPLPAVIAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEPAWSEQQVAAPKQRERQRIVI 237 (256)
T ss_pred EEEEEcCCeEEEEEEcCCEEEEEeCCCCCCCCCCHHHHHHhcCCCceEeCHHHcCCCcCCCcEEEEEecCCCCcCcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999986678888899999988778775
Q ss_pred c-----hHHHHHHHhhhc
Q 025565 235 S-----SVEELIDKLKNE 247 (251)
Q Consensus 235 e-----~~~~l~~~L~~~ 247 (251)
+ .+++|++.|+++
T Consensus 238 ~g~~~e~a~~lv~~L~~~ 255 (256)
T PRK03359 238 EGDGEEQIAAFAENLRKI 255 (256)
T ss_pred cCCcHHHHHHHHHHHHhh
Confidence 4 378999999874
No 2
>PRK12342 hypothetical protein; Provisional
Probab=100.00 E-value=6.6e-64 Score=440.32 Aligned_cols=241 Identities=26% Similarity=0.390 Sum_probs=223.7
Q ss_pred CeEEEEEEeeccCCCceEEecCCCeEEccCCccCCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHH--HHHHHHC
Q 025565 1 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDT--LRTGLAM 78 (251)
Q Consensus 1 M~IvV~~K~Vpd~~~~~~~~~~~~~~~~~~~~~~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~--l~~~la~ 78 (251)
|||+||+|||||.+ +++++++ ++++|++++++|||||++|||+|+||| + .|++|++++|||+++++. +|++++|
T Consensus 1 M~IvV~vKqVPD~~-~v~~~~~-~~l~r~~~~~~iNp~D~~AlE~AlrLk-~-~g~~Vtvls~Gp~~a~~~~l~r~alam 76 (254)
T PRK12342 1 MKIITCFKLVPEEQ-DIVVTPE-RTLNFDNAEAKISQFDLNAIEAASQLA-T-DGDEIAALTVGGSLLQNSKVRKDVLSR 76 (254)
T ss_pred CEEEEEEEECcCCC-ceEECCC-CCEEcCCCCccCChhhHHHHHHHHHHh-h-cCCEEEEEEeCCChHhHHHHHHHHHHc
Confidence 99999999999988 8999975 579999999999999999999999999 4 588999999999875544 4889999
Q ss_pred CCCEEEEEeeCC--CCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEEEecCCCeEE
Q 025565 79 GADRGVHVEAAG--QLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAM 156 (251)
Q Consensus 79 GaD~vi~v~~~~--~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~l~ 156 (251)
|||++|+++|+. +.|++++|++||+++++.+|||||||.+|.|++++|+||+||++||||++|+|.+++++ ++.++
T Consensus 77 GaD~avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~~~~~--~~~~~ 154 (254)
T PRK12342 77 GPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSKIQRQ--GNKLI 154 (254)
T ss_pred CCCEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEEEEEe--CCEEE
Confidence 999999999764 57999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred EEEEeCCeEEEEEECCCEEEEEeCCCCCCCCCChHHHHHhcCCCceeecCCccCCCC-CCCeEEEEEeCCCCCcCe-eEe
Q 025565 157 VEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKYTPQELNVDV-KSDLEVIQVTEPPKRKAG-VIL 234 (251)
Q Consensus 157 ~~R~~~gG~~~~~~~~P~vvtv~~~~~~pr~p~l~~i~~A~k~~i~~~~~~dl~~~~-~~~~~v~~~~~p~~~~~~-~~~ 234 (251)
++|..++|.+++++++|+|+||.++.|+||||+|++||+|+||+|++|+++|||+++ +|++++.++++|++++++ .++
T Consensus 155 v~r~~e~g~e~v~~~lPavvtv~~~~n~PR~psl~~i~~A~kk~i~~~~~~dlg~~~~~~~~~v~~~~~p~~~~~~~~~~ 234 (254)
T PRK12342 155 VERTLEDDVEVLELSLPAVLCVTSDINVPRIPSMKAILGAGKKPVTQWQASDIGWSQSAPLAELVGIRVPPQTERKHIIL 234 (254)
T ss_pred EEEEcCCeEEEEEEcCCEEEEEeCCCCCCCCCCHHHHHHhcCCCceEeCHHHcCCCCCCCceEEEEEeCCCcccCccEEe
Confidence 999999999999999999999999999999999999999999999999999999875 689999999999877766 665
Q ss_pred c-----hHHHHHHHhhhc
Q 025565 235 S-----SVEELIDKLKNE 247 (251)
Q Consensus 235 e-----~~~~l~~~L~~~ 247 (251)
+ .+++|++.|+++
T Consensus 235 ~g~~~e~a~~l~~~L~~~ 252 (254)
T PRK12342 235 DNDSPEAIAELAEHLKKA 252 (254)
T ss_pred cCChHHHHHHHHHHHHHh
Confidence 5 388999999874
No 3
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=100.00 E-value=5.7e-63 Score=434.07 Aligned_cols=249 Identities=49% Similarity=0.765 Sum_probs=233.7
Q ss_pred CeEEEEEEeeccCCCceEEecCCCeEEccCCccCCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCC
Q 025565 1 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGA 80 (251)
Q Consensus 1 M~IvV~~K~Vpd~~~~~~~~~~~~~~~~~~~~~~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~Ga 80 (251)
|||+||+|++||...+++++++++++++++++++|||||++|+|+|+||+|++.|++|++++|||+.+++.+|+|++||+
T Consensus 1 m~ilV~~k~~v~~~~~i~v~~~~~~~~~~gv~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a~~~lr~aLAmGa 80 (260)
T COG2086 1 MKILVLIKKVVDDESKIRVDPDTGTLDRSGVPLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQAEEALREALAMGA 80 (260)
T ss_pred CcEEEEEEEECCccceEEEecCCCccccCCCCcccChhhHHHHHHHHHhhccCCCceEEEEEecchhhHHHHHHHHhcCC
Confidence 99999999666666699999999999999999999999999999999999954789999999999999999999999999
Q ss_pred CEEEEEeeCC--CCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEEE-ecCCCeEEE
Q 025565 81 DRGVHVEAAG--QLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVL-DKEKQLAMV 157 (251)
Q Consensus 81 D~vi~v~~~~--~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~-~~~~~~l~~ 157 (251)
|++|+++|+. ..|++++|++|++.+++++|||||+|.+++|++++|+|++||++||||++|++.++++ + ++++++
T Consensus 81 Draili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~~~d--g~~v~v 158 (260)
T COG2086 81 DRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIEIVD--GGKVTV 158 (260)
T ss_pred CeEEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEEEEcC--CCeEEE
Confidence 9999999754 6899999999999999999999999999999999999999999999999999999997 5 779999
Q ss_pred EEEeCCeEEEEEECCCEEEEEeCCCCCCCCCChHHHHHhcCCCceeecCCccCC---CCCCCeEEEEEeCCCCCcCeeEe
Q 025565 158 EREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKYTPQELNV---DVKSDLEVIQVTEPPKRKAGVIL 234 (251)
Q Consensus 158 ~R~~~gG~~~~~~~~P~vvtv~~~~~~pr~p~l~~i~~A~k~~i~~~~~~dl~~---~~~~~~~v~~~~~p~~~~~~~~~ 234 (251)
+|..++|.+++++++|+|+|+..++|+||||+|++||+|+||||+.|+++|+|+ ...|++++.++++|+.|+.+.++
T Consensus 159 ~R~le~g~e~~e~~LPaVvtv~~~~n~PR~psl~~im~A~kk~v~~~~~~d~g~~~~~~~s~~~v~~~~~~~~r~~~~~v 238 (260)
T COG2086 159 ERELEGGLETVEAPLPAVVTVDLRINEPRYPSLPGIMAAKKKPVKKWSLADLGLNVGLAGSPLKVVKVTPPPERKAGVKV 238 (260)
T ss_pred EEEcCCceEEEEccCCEEEEeccccCCCCCCCHHHHHHhccCCceeccHhHhcccccccCCcceeeeccCCccccCceEe
Confidence 999999999999999999999999999999999999999999999999999993 44789999999999998888887
Q ss_pred ch-----HHHHHHHhhhcCCcC
Q 025565 235 SS-----VEELIDKLKNEARVI 251 (251)
Q Consensus 235 e~-----~~~l~~~L~~~~~~~ 251 (251)
.+ +++|+++|++++.++
T Consensus 239 ~~~~~e~a~~lv~~L~~~~~i~ 260 (260)
T COG2086 239 KDGPEEIAAELVEKLKEEGVIL 260 (260)
T ss_pred cCcHHHHHHHHHHHHHHhhccC
Confidence 65 889999999998764
No 4
>KOG3180 consensus Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=100.00 E-value=3e-53 Score=351.67 Aligned_cols=249 Identities=67% Similarity=1.007 Sum_probs=238.3
Q ss_pred CeEEEEEEeeccCCCceEEecCCCeEEccCCccCCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCC
Q 025565 1 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGA 80 (251)
Q Consensus 1 M~IvV~~K~Vpd~~~~~~~~~~~~~~~~~~~~~~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~Ga 80 (251)
|+|+|.+|.|-|....+|++|+...+++++++..|||||+-|+|+|.||+|++.-.+|+|+++|+..+++.+|.|+|+|+
T Consensus 4 ~riLV~VKRvvDyavK~RVkpdkTgV~t~gvk~SmNPF~eIAvEEAvrlKEk~l~eeviavs~G~aqs~~ilRt~LA~Ga 83 (254)
T KOG3180|consen 4 LRILVGVKRVVDYAVKIRVKPDKTGVVTSGVKHSMNPFCEIAVEEAVRLKEKKLAEEVIAVSIGPAQSQEILRTALAKGA 83 (254)
T ss_pred eEEEEeeeeeeeeeeeeeecCcccceeecccccccCchHHHHHHHHHhHhhhhhhheEEEEecCccchHHHHHHHHhccC
Confidence 79999999999999899999999999999999999999999999999999987778999999999999999999999999
Q ss_pred CEEEEEeeC--CCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEEEecCCCeEEEE
Q 025565 81 DRGVHVEAA--GQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVE 158 (251)
Q Consensus 81 D~vi~v~~~--~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~l~~~ 158 (251)
|+.+|++.. ..+.|..+|++|++.+.++++|+||+|.|.+|.|..|.++++|+.||||+.|++..++.+. ++.+.++
T Consensus 84 dr~~hv~~~~~~~lepl~vAKiLk~~vekek~~lVllGKQAIDDD~nqTgqmlA~lL~WPQ~t~askV~~~~-~~~~~Vt 162 (254)
T KOG3180|consen 84 DRGVHVEVVGAEELEPLHVAKILKKLVEKEKSDLVLLGKQAIDDDCNQTGQMLAALLGWPQATFASKVELEG-DKRVKVT 162 (254)
T ss_pred CceeEEecCchhhccchHHHHHHHHHHHhhcCCEEEEcccccccchhhhHHHHHHHhCCcccccceeEEEcC-CCcEEEE
Confidence 999999854 2678999999999999999999999999999999999999999999999999999999982 3449999
Q ss_pred EEeCCeEEEEEECCCEEEEEeCCCCCCCCCChHHHHHhcCCCceeecCCccCCCCCCCeEEEEEeCCCCCcCeeEechHH
Q 025565 159 REVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKYTPQELNVDVKSDLEVIQVTEPPKRKAGVILSSVE 238 (251)
Q Consensus 159 R~~~gG~~~~~~~~P~vvtv~~~~~~pr~p~l~~i~~A~k~~i~~~~~~dl~~~~~~~~~v~~~~~p~~~~~~~~~e~~~ 238 (251)
|++.||.+++++++|+|+|..-..|+|||.+|.+||+|+|||++.++..|||++-.|.+++.+++.|+.|+.+.++.+++
T Consensus 163 REIDgGletl~~~lPaVittDLRLN~PRya~LpniMKAkkkpl~k~~~~dl~Vdi~~~l~~vsv~ePp~r~~gv~v~svd 242 (254)
T KOG3180|consen 163 REIDGGLETLKVKLPAVITTDLRLNTPRYATLPNIMKAKKKPLKKMTIKDLGVDITPQLETVSVEEPPQRQAGVMVKSVD 242 (254)
T ss_pred EEecCChhheeecCceEEEeecccCCccccccHHHHHhccCCcccCCHHHcCcccccceEEEEecCCCcccCCceeeeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCc
Q 025565 239 ELIDKLKNEARV 250 (251)
Q Consensus 239 ~l~~~L~~~~~~ 250 (251)
+|++.|++.|.+
T Consensus 243 elv~kLKe~g~i 254 (254)
T KOG3180|consen 243 ELVAKLKELGAI 254 (254)
T ss_pred HHHHHHHhccCC
Confidence 999999999875
No 5
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=100.00 E-value=1.5e-40 Score=284.48 Aligned_cols=200 Identities=46% Similarity=0.712 Sum_probs=183.6
Q ss_pred eEEEEEEeeccCCCceEEecCCCeEEccCCccCCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCC
Q 025565 2 KIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGAD 81 (251)
Q Consensus 2 ~IvV~~K~Vpd~~~~~~~~~~~~~~~~~~~~~~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD 81 (251)
||+||+|.|||+.. ....+.++.+++++++..+++++.++|+++++++++ .|++|+++++|+..+++..+++.+||+|
T Consensus 1 ~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vi~e~~~~~l~ea~~la~~-~g~~v~av~~G~~~~~~~~~~l~~~G~d 78 (202)
T cd01714 1 NILVCVKQVPDTEE-KRVDPDTGTIDREGVPLIINPYDEYAVEEALRLKEK-YGGEVTVVSMGPPQAEEALREALAMGAD 78 (202)
T ss_pred CEEEEEEECcCCcc-eEEeCCCCcEEcCCCCccCChHhHHHHHHHHHhhhh-cCCEEEEEEECCHHHHHHHHHHHHcCCC
Confidence 79999999999995 444444567999999999999999999999999987 6779999999986456778888899999
Q ss_pred EEEEEeeCC--CCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEEEecCCCeEEEEE
Q 025565 82 RGVHVEAAG--QLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVER 159 (251)
Q Consensus 82 ~vi~v~~~~--~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~l~~~R 159 (251)
++|+++++. .++++.|+++|++++++.+||+||+|+++.|+++++++|+||++||+|++++|++++++ ++.++++|
T Consensus 79 ~V~~~~~~~~~~~~~e~~a~al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lvsdv~~l~~~--~~~~~~~r 156 (202)
T cd01714 79 RAILVSDRAFAGADTLATAKALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQITYVSKIEIE--GGKVTVER 156 (202)
T ss_pred EEEEEecccccCCChHHHHHHHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCccceEEEEEEe--CCEEEEEE
Confidence 999998764 67999999999999999999999999999988899999999999999999999999998 89999999
Q ss_pred EeCCeEEEEEECCCEEEEEeCCCCCCCCCChHHHHHhcCCCceeec
Q 025565 160 EVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKYT 205 (251)
Q Consensus 160 ~~~gG~~~~~~~~P~vvtv~~~~~~pr~p~l~~i~~A~k~~i~~~~ 205 (251)
+.|+|+.+++++.|+|+||+++.|+|+.|+|+++|.|++|||+.|+
T Consensus 157 ~~~gG~~~~~~~~p~VitVr~g~f~~~~~~~~~~~~a~~~~~~~~~ 202 (202)
T cd01714 157 ELEGGVETVEVKLPAVITVDLGINEPRYPSLPGIMKAKKKPIEVVS 202 (202)
T ss_pred EcCCcEEEEEecCCEEEEEECCCCCCCCCCHHHHHHhcCCCCEeeC
Confidence 9999998777778999999999999999999999999999999985
No 6
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=100.00 E-value=8e-33 Score=232.29 Aligned_cols=176 Identities=40% Similarity=0.539 Sum_probs=156.5
Q ss_pred eEEEEEEeeccCCCceEEecCCCeEEccCCccCCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCC
Q 025565 2 KIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGAD 81 (251)
Q Consensus 2 ~IvV~~K~Vpd~~~~~~~~~~~~~~~~~~~~~~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD 81 (251)
||+||+||.++.. . +++||+|+++|+.|++|++ .+++|+++++|+...+..++.+++||+|
T Consensus 1 ~ilV~~e~~~~~~-~----------------~~l~~~~~e~l~~A~~l~~--~~~~v~~v~~G~~~~~~~~~~~~~~Gad 61 (181)
T cd01985 1 KILVLVEHVPDTA-E----------------LVLNPLDLEAVEAALRLKE--YGGEVTALVIGPPAAEVALREALAMGAD 61 (181)
T ss_pred CEEEEEEEEcCCC-c----------------cccCHhhHHHHHHHHHHhh--cCCeEEEEEECChHHHHHHHHHHHhCCC
Confidence 6999999998854 1 6799999999999999998 3668999999987655556889999999
Q ss_pred EEEEEeeCC--CCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEEEecCCCeEEEEE
Q 025565 82 RGVHVEAAG--QLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVER 159 (251)
Q Consensus 82 ~vi~v~~~~--~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~l~~~R 159 (251)
++|+++++. .++++.|+++|++++++.+||+||+|+++. +++++||||++||+|++++|++++.+ ++.+.++|
T Consensus 62 ~v~~~~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~~---g~~la~rlA~~L~~~~vsdv~~l~~~--~~~~~~~r 136 (181)
T cd01985 62 KVLLVEDPALAGYDPEATAKALAALIKKEKPDLILAGATSI---GKQLAPRVAALLGVPQISDVTKLEID--GGDLTVTR 136 (181)
T ss_pred EEEEEecCcccCCChHHHHHHHHHHHHHhCCCEEEECCccc---ccCHHHHHHHHhCCCcceeEEEEEEe--CCEEEEEE
Confidence 999999764 689999999999999999999999999996 56799999999999999999999998 89999999
Q ss_pred EeCCeE--EEEEEC-CCEEEEEeCCCCCCCCCChHHHHHhcCCCceeec
Q 025565 160 EVDGGL--ETLELD-LPAVITTDLRLNQPRYATLPNIMKAKSKPIKKYT 205 (251)
Q Consensus 160 ~~~gG~--~~~~~~-~P~vvtv~~~~~~pr~p~l~~i~~A~k~~i~~~~ 205 (251)
+.|+|+ ++++++ .|+|+|+++++|+|++|+.++ ++++|+.++
T Consensus 137 ~~~~g~~~~~~~~~~~p~v~tv~~~~~~~~~~~~~~----~~~~i~~~~ 181 (181)
T cd01985 137 PIYAGNGLETVESPDLPAVITVRPGAFEPRYPSGPG----KKKPVEKVS 181 (181)
T ss_pred EccCCCeEEEEEECCCCEEEEecCCCCCCCCCCCCC----CCCCCEecC
Confidence 999887 567776 799999999999999999866 777887763
No 7
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=99.97 E-value=6.6e-30 Score=211.25 Aligned_cols=148 Identities=32% Similarity=0.458 Sum_probs=128.8
Q ss_pred ccCCCHHhHHHHHHHHHhhhhCCCceEEEEeeCC-chhHHHHHHHHH-CCCCEEEEEeeCC--CCCHHHHHHHHHHHHHH
Q 025565 32 KMSMNPFCEIALEEALRIKESGLASEVVAVSMGP-AQCVDTLRTGLA-MGADRGVHVEAAG--QLYPLTVAKILKSLVEV 107 (251)
Q Consensus 32 ~~~in~~d~~Ale~A~~lae~~~g~~V~al~~G~-~~~~~~l~~~la-~GaD~vi~v~~~~--~~d~~a~a~~La~~ik~ 107 (251)
...+||+|+++|+.|++|+++ .|++|+++++|+ +.+.+.++++++ ||+|++|+++++. .++++.|+++|++++++
T Consensus 10 ~~~l~~~~~e~l~~A~~La~~-~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~ 88 (164)
T PF01012_consen 10 DGRLNPVSLEALEAARRLAEA-LGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKE 88 (164)
T ss_dssp TCEE-HHHHHHHHHHHHHHHC-TTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHhh-cCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHh
Confidence 557899999999999999998 688999999998 567888999999 9999999999765 57999999999999999
Q ss_pred hCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEEEecCCCeEEEEEEeCCeEEEEEECC---CEEEEEeCCCCC
Q 025565 108 EKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDL---PAVITTDLRLNQ 184 (251)
Q Consensus 108 ~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~l~~~R~~~gG~~~~~~~~---P~vvtv~~~~~~ 184 (251)
.+||+||+|+++.|++ ++|+||++||+|++++|++++.+ ++.+.++|+.|+|+...++.. |+|+|+++++|+
T Consensus 89 ~~~~lVl~~~t~~g~~---la~~lA~~L~~~~v~~v~~l~~~--~~~~~~~r~~~gG~~~~~~~~~~~~~v~tv~~g~f~ 163 (164)
T PF01012_consen 89 EGPDLVLFGSTSFGRD---LAPRLAARLGAPLVTDVTDLEVE--DGGLVVTRPVYGGKVVATVRLPSPPAVVTVRPGAFE 163 (164)
T ss_dssp HT-SEEEEESSHHHHH---HHHHHHHHHT-EEEEEEEEEEEE--TTEEEEEEEETTTTEEEEEECSSSSEEEEE-TTSS-
T ss_pred cCCCEEEEcCcCCCCc---HHHHHHHHhCCCccceEEEEEEC--CCeEEEEEECCCCEEEEEEECCCCCEEEEEeCCCcC
Confidence 9999999999997765 99999999999999999999998 999999999999996666554 499999999998
Q ss_pred C
Q 025565 185 P 185 (251)
Q Consensus 185 p 185 (251)
|
T Consensus 164 P 164 (164)
T PF01012_consen 164 P 164 (164)
T ss_dssp -
T ss_pred c
Confidence 7
No 8
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=99.91 E-value=2.2e-23 Score=173.28 Aligned_cols=139 Identities=20% Similarity=0.162 Sum_probs=121.1
Q ss_pred CCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCC--CCCHHHHHHHHHHHHHHhCCC
Q 025565 34 SMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG--QLYPLTVAKILKSLVEVEKPG 111 (251)
Q Consensus 34 ~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~--~~d~~a~a~~La~~ik~~~~d 111 (251)
.++|.+.++++.|.+|+ ++|+++++|+.. ++..+++.+||+|++|+++++. .++++.++++|++++++.+||
T Consensus 12 ~l~~~s~el~~~A~~l~-----~~v~~v~~G~~~-~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~a~al~~~i~~~~p~ 85 (168)
T cd01715 12 ELRELTLEAVTAARKLG-----GEVTALVIGSGA-EAVAAALKAYGADKVLVAEDPALAHYLAEPYAPALVALAKKEKPS 85 (168)
T ss_pred ChHHHHHHHHHHHHHhC-----CCEEEEEECCCh-HHHHHHHHhcCCCEEEEecChhhcccChHHHHHHHHHHHHhcCCC
Confidence 58999999999988874 369999999874 4458899999999999998764 579999999999999999999
Q ss_pred EEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEEEecCCCeEEEEEEeCCeEE--EEEEC-CCEEEEEeCCCCCCC
Q 025565 112 LIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLE--TLELD-LPAVITTDLRLNQPR 186 (251)
Q Consensus 112 lIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~l~~~R~~~gG~~--~~~~~-~P~vvtv~~~~~~pr 186 (251)
+||+|+++. +++++||||++||+|++++|++++. .+.++|+.|+|+. +++++ .|+|+|++++.|+|-
T Consensus 86 ~Vl~~~t~~---g~~la~rlAa~L~~~~vtdv~~l~~-----~~~~~r~~~gG~~~~~~~~~~~p~v~tv~~g~f~~~ 155 (168)
T cd01715 86 HILAGATSF---GKDLAPRVAAKLDVGLISDVTALED-----DLTFTRPIYAGNALATVKSPDRPKVATVRPGAFPAA 155 (168)
T ss_pred EEEECCCcc---ccchHHHHHHHhCCCceeeEEEEcc-----CcEEEccccCceEEEEEEeCCCCeEEEEcCCcccCC
Confidence 999999984 5679999999999999999999954 4689999999994 44443 589999999999874
No 9
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=99.85 E-value=2.4e-19 Score=164.52 Aligned_cols=149 Identities=12% Similarity=0.071 Sum_probs=123.7
Q ss_pred ccCCccCCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCch-hHHHHHHHHH--CCCCEEEEEeeCC--CCCHHHHHHHHH
Q 025565 28 TNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQ-CVDTLRTGLA--MGADRGVHVEAAG--QLYPLTVAKILK 102 (251)
Q Consensus 28 ~~~~~~~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~-~~~~l~~~la--~GaD~vi~v~~~~--~~d~~a~a~~La 102 (251)
.+.-.-.++|.++++|..|++|++. +++|.++.+|+.. .++...++.. ||+|++|+++++. .|+++.|+++|+
T Consensus 33 ~E~~~g~l~~~slEll~~Ar~La~~--~~~v~avv~g~~~~~~~~a~~l~~~~~Gad~V~~~~~~~l~~y~~e~~a~al~ 110 (356)
T PLN00022 33 AEHEGGSVKPQSLSAVAAAKSLLGE--SSPISLLLAGSGPSLQQAASHAASSHPSVSEVLVADSDKLTHPLAEPWAKLVV 110 (356)
T ss_pred EeCcCCEeCHHHHHHHHHHHHhcCC--CCceEEEEEcCCcchhhHHHHHhhccCCCCEEEEecCchhcccChHHHHHHHH
Confidence 3334557899999999999999875 3579999999653 2456666665 6999999998664 578999999999
Q ss_pred HHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEEEecCCCeEEEEEEeCCeE--EEEEEC--CCEEEEE
Q 025565 103 SLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGL--ETLELD--LPAVITT 178 (251)
Q Consensus 103 ~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~l~~~R~~~gG~--~~~~~~--~P~vvtv 178 (251)
+++++.+|++||+|+|..+ ++++||||.+|++++++||++++ + ++ .++|+.|+|+ .++.++ .|+|+|+
T Consensus 111 ~li~~~~P~~vL~~~T~~G---rdlApRlAarL~~gl~aD~~~l~-~--~~--~~~rp~~gG~~~a~i~~~~~~p~~~Tv 182 (356)
T PLN00022 111 LAQQKGGYSHILAASTSFG---KNVLPRAAALLDVSPITDVVRIL-D--SN--TFVRPIYAGNALATVRYKGSGPCMLSI 182 (356)
T ss_pred HHHHhcCCCEEEECCCCch---hHHHHHHHHHhCCCeecCEEEEc-C--CC--eEEEEecCCcEEEEEEeCCCCcEEEEE
Confidence 9999999999999999855 56999999999999999999996 3 44 4899999998 455553 4899999
Q ss_pred eCCCCCCC
Q 025565 179 DLRLNQPR 186 (251)
Q Consensus 179 ~~~~~~pr 186 (251)
+++.|+|.
T Consensus 183 rpg~f~~~ 190 (356)
T PLN00022 183 RPTSFPVT 190 (356)
T ss_pred CCCccccc
Confidence 99999864
No 10
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=99.81 E-value=3.1e-18 Score=154.99 Aligned_cols=148 Identities=15% Similarity=0.113 Sum_probs=119.3
Q ss_pred HHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCC-CCCHHHHHHHHHHHHHHhCC-CEEEEcc
Q 025565 40 EIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG-QLYPLTVAKILKSLVEVEKP-GLIILGK 117 (251)
Q Consensus 40 ~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~-~~d~~a~a~~La~~ik~~~~-dlIl~G~ 117 (251)
.+++..|++|+ +++.++.+|+.. ..++..||+|++|+++++. .|+++.|+++|++++++.+| ++||+|+
T Consensus 18 ~Ell~~a~~l~-----~~v~av~~g~~~----~~~~~~~Gad~V~~~~~~~~~~~~e~~~~al~~~i~~~~p~~~vl~~~ 88 (313)
T PRK03363 18 PELMNGAQALA-----NQINAFVLNDAD----GAQAIQLGANHVWKLSGKPDDRMIEDYAGVMADTIRQHGADGLVLLPN 88 (313)
T ss_pred HHHHHHHHHhc-----CceEEEEECcch----HHHHHhcCCCEEEEecCcccccChHHHHHHHHHHHHhhCCCcEEEEcC
Confidence 38888887773 358899999532 2456789999999998753 48899999999999999999 8999999
Q ss_pred eeecCCcCcHHHHHHHHcCCCcccceeeEEEecCCCeEEEEEEeCCeEE--EEEEC-CCEEEEEeCCCCCCCCCChHHHH
Q 025565 118 QAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLE--TLELD-LPAVITTDLRLNQPRYATLPNIM 194 (251)
Q Consensus 118 ~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~l~~~R~~~gG~~--~~~~~-~P~vvtv~~~~~~pr~p~l~~i~ 194 (251)
|..+ ++++||||.+|++++++||++|+++ ++.+.++|+.|+|+. ++.+. .|+|+|++++.|+|..|.
T Consensus 89 T~~G---r~laprlAa~l~~gl~~D~~~l~~~--~~~l~~~rp~~gG~~~a~~~~~~~~~v~tvrpg~f~~~~~~----- 158 (313)
T PRK03363 89 TRRG---KLLAAKLGYRLKAAVSNDASTVSVQ--DGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPD----- 158 (313)
T ss_pred CccH---HHHHHHHHHHhCCCcccceEEEEec--CCCcEEEEeccCCcEEEEEEECCCCeEEEECCCCccCCccC-----
Confidence 9855 5699999999999999999999998 777899999999983 44555 479999999999875443
Q ss_pred HhcCCCceeecC
Q 025565 195 KAKSKPIKKYTP 206 (251)
Q Consensus 195 ~A~k~~i~~~~~ 206 (251)
..+..++.....
T Consensus 159 ~~~~~~v~~~~~ 170 (313)
T PRK03363 159 ASRTGETHTVEW 170 (313)
T ss_pred CCCCcceEEecc
Confidence 233344555443
No 11
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=99.80 E-value=2.3e-18 Score=155.73 Aligned_cols=135 Identities=15% Similarity=0.134 Sum_probs=114.0
Q ss_pred HHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeC-CCCCHHHHHHHHHHHHHHhCCCEEEEccee
Q 025565 41 IALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAA-GQLYPLTVAKILKSLVEVEKPGLIILGKQA 119 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~-~~~d~~a~a~~La~~ik~~~~dlIl~G~~s 119 (251)
++|..|.+| +++|+++.+|+. ...++..||+|++|+++++ ..++++.|+++|++++++.+|++||+|+|.
T Consensus 19 Ell~~A~~l-----~~~v~~vv~g~~----~~~~l~~~Gad~V~~~~~~~~~~~~e~~~~al~~~i~~~~P~~vL~~~T~ 89 (312)
T PRK11916 19 ELFGGAQQW-----GQQVYAIVQNTD----QAQAVMPYGPKCIYVLEQNDALQRTENYAESIAALLKDKHPAMLLLAATK 89 (312)
T ss_pred HHHHHHHHc-----CCcEEEEEEChh----HHHHHHhcCCCEEEEeCCcccccChHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 777766554 457999999953 3455678999999999876 456799999999999999999999999998
Q ss_pred ecCCcCcHHHHHHHHcCCCcccceeeEEEecCCCeEEEEEEeCCeE--EEEEEC-CCEEEEEeCCCCCCCCCC
Q 025565 120 IDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGL--ETLELD-LPAVITTDLRLNQPRYAT 189 (251)
Q Consensus 120 ~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~l~~~R~~~gG~--~~~~~~-~P~vvtv~~~~~~pr~p~ 189 (251)
.+ ++++||||.+|++++++||++++++ ++.+.++|+.|||+ .++.++ .|+|+|++++.|+|..++
T Consensus 90 ~G---rdla~rlAarL~~gl~~d~~~l~~~--~~~~~~~rp~~gG~~~a~i~~~~~p~v~tvrpg~f~~~~~~ 157 (312)
T PRK11916 90 RG---KALAARLSVQLNAALVNDATAVDIV--DGHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTSD 157 (312)
T ss_pred ch---HHHHHHHHHHhCCCcccceEEEEec--CCCeEEEEEcCCCcEEEEEEECCCCeEEEECCCCcCCCcCC
Confidence 55 5699999999999999999999998 88889999999998 355554 589999999999876443
No 12
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=99.80 E-value=7.4e-18 Score=151.72 Aligned_cols=142 Identities=23% Similarity=0.226 Sum_probs=124.3
Q ss_pred ccCCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCC--CCCHHHHHHHHHHHHHHhC
Q 025565 32 KMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG--QLYPLTVAKILKSLVEVEK 109 (251)
Q Consensus 32 ~~~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~--~~d~~a~a~~La~~ik~~~ 109 (251)
...++|.++++++.|.++. +|.++++|. ....++..+|+|+++.++++. .+.++.|+++|++++++++
T Consensus 11 ~~~l~~~s~el~~~A~~l~------~v~~vv~g~----~~~~~~~~~Gad~v~~~~~~~~~~~~~e~~~~~l~~l~~~~~ 80 (313)
T COG2025 11 GGRLSPVSLELLTAARKLG------DVAAVVIGE----GAAAAAKAYGADKVLVAEGPELANYLPEPYADALVDLAKKYK 80 (313)
T ss_pred CCccchhhHHHHHHHHhcC------ceEEEEech----HHHHHHhhcCCCEEEEEcccchhccchhHHHHHHHHHHHhcC
Confidence 4568999999999977663 799999997 466788899999999999765 5789999999999999999
Q ss_pred CCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEEEecCCCeEEEEEEeCCeE--EEEEE--CCCEEEEEeCCCCCC
Q 025565 110 PGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGL--ETLEL--DLPAVITTDLRLNQP 185 (251)
Q Consensus 110 ~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~l~~~R~~~gG~--~~~~~--~~P~vvtv~~~~~~p 185 (251)
|+.||+|+|+.+ +++++|+|.+|+.++++||++++++ ++ ++++|+.|+|+ .+++. +.|.|+|++++.|++
T Consensus 81 p~~il~~aT~~G---k~la~rvAa~l~~~~~~D~~~l~~~--~~-l~~~Rp~ygG~~i~~~~~~~~~~~v~Tvr~g~~~~ 154 (313)
T COG2025 81 PDVVLLPATTNG---KELAPRVAARLDVGLIADVTSLDVG--DG-LTFTRPIYGGNAIATVISPSGRPAVITVRPGVFAA 154 (313)
T ss_pred CCEEEEcCCCch---HHHHHHHHHHcCCCceEEEEEEEcC--Cc-cEEEeeccccceeEEEecCCCCceEEEEcccccCC
Confidence 999999999855 5799999999999999999999998 77 99999999998 45555 359999999999987
Q ss_pred CCCC
Q 025565 186 RYAT 189 (251)
Q Consensus 186 r~p~ 189 (251)
..+.
T Consensus 155 ~~~~ 158 (313)
T COG2025 155 AAAA 158 (313)
T ss_pred CCCC
Confidence 5444
No 13
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=99.23 E-value=2.9e-10 Score=99.27 Aligned_cols=144 Identities=15% Similarity=0.131 Sum_probs=118.1
Q ss_pred cCCccCCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHH-HHHCC-CCEEEEEeeCC--CCCHHHHHHHHHHH
Q 025565 29 NNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRT-GLAMG-ADRGVHVEAAG--QLYPLTVAKILKSL 104 (251)
Q Consensus 29 ~~~~~~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~-~la~G-aD~vi~v~~~~--~~d~~a~a~~La~~ 104 (251)
+...-.++|..++++++|.+| |++|+++..|.. +.+.... +.-+| ..+++..+++. ..-++.++..|-+.
T Consensus 28 Eh~~g~l~p~tls~i~AA~kl-----g~~vs~lv~Gs~-~~k~ae~~ak~~~~v~kvlvae~~k~~~~lpe~lapl~~~~ 101 (336)
T KOG3954|consen 28 EHQNGSLSPITLSTITAAKKL-----GGDVSVLVAGSK-ASKAAEALAKVVGDVKKVLVAEDDKLEGNLPEQLAPLLLAN 101 (336)
T ss_pred eccCCcccchhhHHHHHHHHc-----CCceEEEEecCc-chHHHHHHHhhccchheEEEeecchhcccchHHhHHHHHHH
Confidence 344667899999999998776 569999999975 3444333 44477 89999999765 45799999999999
Q ss_pred HHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEEEecCCCeEEEEEEeCCeEE--EEEECC-CEEEEEeCC
Q 025565 105 VEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLE--TLELDL-PAVITTDLR 181 (251)
Q Consensus 105 ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~l~~~R~~~gG~~--~~~~~~-P~vvtv~~~ 181 (251)
.|+.+|.-|+.|+++-+ +.+-||+|++|+...+++++.+.-. + ++.|++|.|+. ++++.- ++++|++..
T Consensus 102 ~kq~~yshi~a~~SafG---K~vlPRvaA~lDV~pIsdvi~i~s~--d---tFvRpiYAGNa~~tv~~~~~~k~ltvR~t 173 (336)
T KOG3954|consen 102 QKQFDYSHILAGSSAFG---KNVLPRVAAKLDVSPISDVIGIKSA--D---TFVRPIYAGNAICTVKCKAPIKLLTVRAT 173 (336)
T ss_pred HhcCCeeEEEecccccc---ccchhhHHhhhcccchhheeEeccC--c---ceeeeeeccceEEEEEcCCCceEEEEecc
Confidence 99999999999999855 5599999999999999999998643 2 57899999984 666654 599999999
Q ss_pred CCCCC
Q 025565 182 LNQPR 186 (251)
Q Consensus 182 ~~~pr 186 (251)
+|+|-
T Consensus 174 sF~~a 178 (336)
T KOG3954|consen 174 SFPPA 178 (336)
T ss_pred cCCCc
Confidence 99884
No 14
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=96.24 E-value=0.14 Score=38.41 Aligned_cols=98 Identities=19% Similarity=0.147 Sum_probs=67.0
Q ss_pred CHHhHHHHHHHHHhhhhCCCceEEEEeeCCc--------------hhHHHHHHHHH----CCCCEEEEEeeCCCCCHHHH
Q 025565 36 NPFCEIALEEALRIKESGLASEVVAVSMGPA--------------QCVDTLRTGLA----MGADRGVHVEAAGQLYPLTV 97 (251)
Q Consensus 36 n~~d~~Ale~A~~lae~~~g~~V~al~~G~~--------------~~~~~l~~~la----~GaD~vi~v~~~~~~d~~a~ 97 (251)
++....+++.|.+++.. .+.+++++.+-+. ..++.++.... .|+.--+.+... ++
T Consensus 9 ~~~~~~~l~~a~~~a~~-~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~--- 81 (130)
T cd00293 9 SEESERALRWAARLARR-LGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEG---DP--- 81 (130)
T ss_pred CHHHHHHHHHHHHHHHh-cCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecC---CC---
Confidence 67788999999999998 6889999987653 12334444443 466543343321 22
Q ss_pred HHHHHHHHHHhCCCEEEEcceeecC----CcCcHHHHHHHHcCCCcc
Q 025565 98 AKILKSLVEVEKPGLIILGKQAIDD----DCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 98 a~~La~~ik~~~~dlIl~G~~s~d~----~~~~v~~~lA~~Lg~p~v 140 (251)
++.|.+.+++.++|+|++|....+. -.+.++-.+...++.|++
T Consensus 82 ~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~~~~ll~~~~~pvl 128 (130)
T cd00293 82 AEAILEAAEELGADLIVMGSRGRSGLRRLLLGSVAERVLRHAPCPVL 128 (130)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCccceeeeccHHHHHHhCCCCCEE
Confidence 6889999999999999999876543 245566666666666654
No 15
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=95.55 E-value=0.096 Score=40.10 Aligned_cols=95 Identities=16% Similarity=0.118 Sum_probs=62.7
Q ss_pred CHHhHHHHHHHHHhhhhCCCceEEEEeeCCchh-------HHHH----HHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHH
Q 025565 36 NPFCEIALEEALRIKESGLASEVVAVSMGPAQC-------VDTL----RTGLAMGADRGVHVEAAGQLYPLTVAKILKSL 104 (251)
Q Consensus 36 n~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~-------~~~l----~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ 104 (251)
++.+.++++.|.+++.. .+.+++.+.+-+... ++.+ +.+-..|.+.. ++.+ .+ .++.|.++
T Consensus 9 s~~s~~al~~a~~la~~-~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~---~~---~~~~I~~~ 80 (124)
T cd01987 9 GPNAERLIRRAARLADR-LKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVV-TLPG---DD---VAEAIVEF 80 (124)
T ss_pred CcchHHHHHHHHHHHHH-hCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEE-EEeC---Cc---HHHHHHHH
Confidence 55688999999999998 688999888877542 2222 22334555432 2221 12 35889999
Q ss_pred HHHhCCCEEEEcceeecCCc----CcHHHHHHHHc-CCC
Q 025565 105 VEVEKPGLIILGKQAIDDDC----NQTGQMVAGLL-SWP 138 (251)
Q Consensus 105 ik~~~~dlIl~G~~s~d~~~----~~v~~~lA~~L-g~p 138 (251)
+++.++|+|++|....++-. |.++-++..+. .+|
T Consensus 81 ~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~ 119 (124)
T cd01987 81 AREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNID 119 (124)
T ss_pred HHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCe
Confidence 99999999999998654322 44566666665 443
No 16
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=95.53 E-value=0.33 Score=37.11 Aligned_cols=98 Identities=13% Similarity=0.090 Sum_probs=60.5
Q ss_pred CHHhHHHHHHHHHhhhhCCCceEEEEeeCC--ch------------hHHHHH----HHHHCCCCEEEEEeeCCCCCHHHH
Q 025565 36 NPFCEIALEEALRIKESGLASEVVAVSMGP--AQ------------CVDTLR----TGLAMGADRGVHVEAAGQLYPLTV 97 (251)
Q Consensus 36 n~~d~~Ale~A~~lae~~~g~~V~al~~G~--~~------------~~~~l~----~~la~GaD~vi~v~~~~~~d~~a~ 97 (251)
++.+..+|+.|.+|+.. .+.+++++.+=+ .. .++.++ .+..+|.+--..+... . + .
T Consensus 9 s~~~~~~l~~a~~la~~-~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~-~---~ 82 (132)
T cd01988 9 PNTARDLLELAAALARA-QNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLGVPVHTIIRID-H-D---I 82 (132)
T ss_pred chhHHHHHHHHHHHhhc-CCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCceEEEEEec-C-C---H
Confidence 56788999999999987 678998887622 10 112222 2334566532222211 1 2 3
Q ss_pred HHHHHHHHHHhCCCEEEEcceeecCC----cCcHHHHHHHHcCCCc
Q 025565 98 AKILKSLVEVEKPGLIILGKQAIDDD----CNQTGQMVAGLLSWPQ 139 (251)
Q Consensus 98 a~~La~~ik~~~~dlIl~G~~s~d~~----~~~v~~~lA~~Lg~p~ 139 (251)
+..|.+.+++.++|+|++|.....+. -|.++-++..+..+|+
T Consensus 83 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~~~pv 128 (132)
T cd01988 83 ASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLESAPCDV 128 (132)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHhcCCCCE
Confidence 46788888888999999999865442 2345555555555554
No 17
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=94.60 E-value=0.57 Score=36.80 Aligned_cols=81 Identities=19% Similarity=0.106 Sum_probs=52.2
Q ss_pred CHHhHHHHHHHHHhhhhCCCceEEEEeeCCc-----------------------hhHHHHHHHH----HCCCCEEEEEee
Q 025565 36 NPFCEIALEEALRIKESGLASEVVAVSMGPA-----------------------QCVDTLRTGL----AMGADRGVHVEA 88 (251)
Q Consensus 36 n~~d~~Ale~A~~lae~~~g~~V~al~~G~~-----------------------~~~~~l~~~l----a~GaD~vi~v~~ 88 (251)
++.+..||+.|.+++.. .|.+++.+.+-+. .+++.++++. ..|..-..++..
T Consensus 9 S~~s~~al~~a~~~a~~-~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 87 (146)
T cd01989 9 DKKSKNALKWALDNLAT-KGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSRKGVQCEDVVLE 87 (146)
T ss_pred ccccHHHHHHHHHhccC-CCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEe
Confidence 56788999999999987 6888888866432 1112233322 345443323221
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecC
Q 025565 89 AGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDD 122 (251)
Q Consensus 89 ~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~ 122 (251)
. -+ .++.|.+.+++.++|+|++|+...++
T Consensus 88 g--~~---~~~~I~~~a~~~~~dlIV~Gs~g~~~ 116 (146)
T cd01989 88 D--DD---VAKAIVEYVADHGITKLVMGASSDNH 116 (146)
T ss_pred C--Cc---HHHHHHHHHHHcCCCEEEEeccCCCc
Confidence 1 12 25678888999999999999986554
No 18
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=92.80 E-value=2 Score=32.13 Aligned_cols=99 Identities=17% Similarity=0.149 Sum_probs=62.9
Q ss_pred CCHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhH---------------HHHH--------HHHHCCCC-EEEEEeeCC
Q 025565 35 MNPFCEIALEEALRIKESGLASEVVAVSMGPAQCV---------------DTLR--------TGLAMGAD-RGVHVEAAG 90 (251)
Q Consensus 35 in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~---------------~~l~--------~~la~GaD-~vi~v~~~~ 90 (251)
-.+.+..+++.|.+++.. .+.+|+.+.+=+.... .... .....+.. ....+...
T Consensus 11 ~~~~~~~al~~a~~la~~-~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 88 (140)
T PF00582_consen 11 GSEESRRALRFALELAKR-SGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEAEGGIVIEVVIESG- 88 (140)
T ss_dssp SSHHHHHHHHHHHHHHHH-HTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEES-
T ss_pred CCHHHHHHHHHHHHHHHh-hCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhhhccceeEEEEEee-
Confidence 367788999999999998 6889998876553100 0000 01122333 33333322
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCc----CcHHHHHHHHcCCCcc
Q 025565 91 QLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDC----NQTGQMVAGLLSWPQG 140 (251)
Q Consensus 91 ~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~----~~v~~~lA~~Lg~p~v 140 (251)
..++.|.+.+++.++|+|++|.....+-. |.+.-+++....+|++
T Consensus 89 -----~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVl 137 (140)
T PF00582_consen 89 -----DVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVL 137 (140)
T ss_dssp -----SHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEE
T ss_pred -----ccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEE
Confidence 24578888999999999999998844433 3466666666666643
No 19
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=92.70 E-value=1.8 Score=33.98 Aligned_cols=78 Identities=12% Similarity=0.167 Sum_probs=49.4
Q ss_pred CCHHhHHHHHHHHHhhhhCCCceEEEEeeCCch----------------------hHHHHHHH-HHCCCCE-EEEEeeCC
Q 025565 35 MNPFCEIALEEALRIKESGLASEVVAVSMGPAQ----------------------CVDTLRTG-LAMGADR-GVHVEAAG 90 (251)
Q Consensus 35 in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~----------------------~~~~l~~~-la~GaD~-vi~v~~~~ 90 (251)
.++.+..||+.|..|+.. .+.+++.+.+-+.. ..+.+++. ...|.+. ..++...
T Consensus 12 ~S~~s~~al~~a~~la~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G- 89 (144)
T PRK15118 12 LSPESKVLVEKAVSMARP-YNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNAGYPITETLSGSG- 89 (144)
T ss_pred CChhHHHHHHHHHHHHHh-hCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEec-
Confidence 355678999999999987 57898888773210 00112222 2346552 2333211
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEccee
Q 025565 91 QLYPLTVAKILKSLVEVEKPGLIILGKQA 119 (251)
Q Consensus 91 ~~d~~a~a~~La~~ik~~~~dlIl~G~~s 119 (251)
++ +..|.+.+++.++|+|++|...
T Consensus 90 --~p---~~~I~~~a~~~~~DLIV~Gs~~ 113 (144)
T PRK15118 90 --DL---GQVLVDAIKKYDMDLVVCGHHQ 113 (144)
T ss_pred --CH---HHHHHHHHHHhCCCEEEEeCcc
Confidence 22 3577788888999999999973
No 20
>PRK10116 universal stress protein UspC; Provisional
Probab=92.14 E-value=1.7 Score=33.85 Aligned_cols=95 Identities=8% Similarity=-0.010 Sum_probs=54.7
Q ss_pred HhHHHHHHHHHhhhhCCCceEEEEeeCCc-------------h--------hHHHHHH-HHHCCCCE-EEEEeeCCCCCH
Q 025565 38 FCEIALEEALRIKESGLASEVVAVSMGPA-------------Q--------CVDTLRT-GLAMGADR-GVHVEAAGQLYP 94 (251)
Q Consensus 38 ~d~~Ale~A~~lae~~~g~~V~al~~G~~-------------~--------~~~~l~~-~la~GaD~-vi~v~~~~~~d~ 94 (251)
....||+.|.+|+.+ .+.+++.+.+=+. . .++.+++ ....|... ..++.. -++
T Consensus 15 ~s~~al~~A~~lA~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---G~~ 90 (142)
T PRK10116 15 ESQQLLAKAVSIARP-VNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDADYPIEKTFIAY---GEL 90 (142)
T ss_pred chHHHHHHHHHHHHH-hCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEec---CCH
Confidence 456899999999987 5778888754211 0 0112222 22345432 233331 133
Q ss_pred HHHHHHHHHHHHHhCCCEEEEcceeecCCcC--cHHHHHHHHcCCCc
Q 025565 95 LTVAKILKSLVEVEKPGLIILGKQAIDDDCN--QTGQMVAGLLSWPQ 139 (251)
Q Consensus 95 ~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~--~v~~~lA~~Lg~p~ 139 (251)
. ..|.+.+++.++|||++|....++-.+ .++..+....++|+
T Consensus 91 ~---~~I~~~a~~~~~DLiV~g~~~~~~~~~~~s~a~~v~~~~~~pV 134 (142)
T PRK10116 91 S---EHILEVCRKHHFDLVICGNHNHSFFSRASCSAKRVIASSEVDV 134 (142)
T ss_pred H---HHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHHhcCCCCE
Confidence 2 577788899999999999975432211 23345555555554
No 21
>PRK15005 universal stress protein F; Provisional
Probab=91.32 E-value=3.5 Score=32.07 Aligned_cols=95 Identities=15% Similarity=0.101 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhhhhCCCceEEEEeeCCc-------------h----------hHHHHHHHHH-CCCC---EEEEEeeCCC
Q 025565 39 CEIALEEALRIKESGLASEVVAVSMGPA-------------Q----------CVDTLRTGLA-MGAD---RGVHVEAAGQ 91 (251)
Q Consensus 39 d~~Ale~A~~lae~~~g~~V~al~~G~~-------------~----------~~~~l~~~la-~GaD---~vi~v~~~~~ 91 (251)
...|++.|.+++.. .+.+++.+.+=+. . +.+.++++.. .+.+ --.++.. +
T Consensus 17 ~~~a~~~a~~la~~-~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~--G 93 (144)
T PRK15005 17 TQRVISHVEAEAKI-DDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKLPTDRVHVHVEE--G 93 (144)
T ss_pred HHHHHHHHHHHHhc-cCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeC--C
Confidence 46899999999987 6778776543110 0 1112332222 2221 1122221 1
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEcceeecCC---cCcHHHHHHHHcCCCcc
Q 025565 92 LYPLTVAKILKSLVEVEKPGLIILGKQAIDDD---CNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 92 ~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~---~~~v~~~lA~~Lg~p~v 140 (251)
++ +..|.+.+++.++|+|++|....+.. -|.++-++..+...|++
T Consensus 94 -~p---~~~I~~~a~~~~~DLIV~Gs~~~~~~~~llGS~a~~vl~~a~cpVl 141 (144)
T PRK15005 94 -SP---KDRILELAKKIPADMIIIASHRPDITTYLLGSNAAAVVRHAECSVL 141 (144)
T ss_pred -CH---HHHHHHHHHHcCCCEEEEeCCCCCchheeecchHHHHHHhCCCCEE
Confidence 33 36777888889999999997632211 14456666666666643
No 22
>PRK09982 universal stress protein UspD; Provisional
Probab=91.15 E-value=1.2 Score=35.19 Aligned_cols=76 Identities=12% Similarity=0.218 Sum_probs=46.1
Q ss_pred CHHhHHHHHHHHHhhhhCCCceEEEEeeCCc--------------hhHH--------HHHHHHH-CC-CCEEEEEeeCCC
Q 025565 36 NPFCEIALEEALRIKESGLASEVVAVSMGPA--------------QCVD--------TLRTGLA-MG-ADRGVHVEAAGQ 91 (251)
Q Consensus 36 n~~d~~Ale~A~~lae~~~g~~V~al~~G~~--------------~~~~--------~l~~~la-~G-aD~vi~v~~~~~ 91 (251)
++.+..|++.|.+++.. .+.+++.+.+=+. ...+ .++++.. .+ .+--+++...
T Consensus 13 S~~s~~al~~A~~lA~~-~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~G-- 89 (142)
T PRK09982 13 NEEDALLVNKALELARH-NDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWPKTKLRIERG-- 89 (142)
T ss_pred CcchHHHHHHHHHHHHH-hCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEec--
Confidence 34567999999999987 6889988866321 0001 1222221 12 1111222211
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEcce
Q 025565 92 LYPLTVAKILKSLVEVEKPGLIILGKQ 118 (251)
Q Consensus 92 ~d~~a~a~~La~~ik~~~~dlIl~G~~ 118 (251)
+ .+..|.+.+++.++|+|++|+.
T Consensus 90 -~---p~~~I~~~A~~~~aDLIVmG~~ 112 (142)
T PRK09982 90 -E---MPETLLEIMQKEQCDLLVCGHH 112 (142)
T ss_pred -C---HHHHHHHHHHHcCCCEEEEeCC
Confidence 2 2577888899999999999974
No 23
>PRK15456 universal stress protein UspG; Provisional
Probab=91.06 E-value=4.8 Score=31.45 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=55.5
Q ss_pred HHhHHHHHHHHHhhhhCCCceEEEEeeCCch----------------------hHHHHHHHHH-C---CCCEEEEEeeCC
Q 025565 37 PFCEIALEEALRIKESGLASEVVAVSMGPAQ----------------------CVDTLRTGLA-M---GADRGVHVEAAG 90 (251)
Q Consensus 37 ~~d~~Ale~A~~lae~~~g~~V~al~~G~~~----------------------~~~~l~~~la-~---GaD~vi~v~~~~ 90 (251)
+.+..|+++|.++++. . .++..+.+=+.. +++.+.++.+ . |.+--.++..
T Consensus 15 ~~s~~al~~A~~la~~-~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~v~~-- 90 (142)
T PRK15456 15 ELSDKAVRHAEFLAQD-D-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTIDPSRIKQHVRF-- 90 (142)
T ss_pred hHHHHHHHHHHHHHhc-C-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCCCCcceEEEEcC--
Confidence 5788999999999986 3 477776543310 1111222222 2 2221122221
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEcceeecCC---cCcHHHHHHHHcCCCcc
Q 025565 91 QLYPLTVAKILKSLVEVEKPGLIILGKQAIDDD---CNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 91 ~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~---~~~v~~~lA~~Lg~p~v 140 (251)
+ ++ +..|.+.+++.++|+|++|....+.. -|.++-++..+..+|++
T Consensus 91 G-~~---~~~I~~~a~~~~~DLIVmG~~g~~~~~~llGS~a~~v~~~a~~pVL 139 (142)
T PRK15456 91 G-SV---RDEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVL 139 (142)
T ss_pred C-Ch---HHHHHHHHhhcCCCEEEEcCCCCCccceecCccHHHHHHcCCCCEE
Confidence 1 22 35677888889999999999754321 14466666666666653
No 24
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=90.36 E-value=1 Score=41.65 Aligned_cols=51 Identities=20% Similarity=0.113 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHH----HHHcCCCcccce
Q 025565 93 YPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMV----AGLLSWPQGTFA 143 (251)
Q Consensus 93 d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~l----A~~Lg~p~vt~v 143 (251)
+.+...+-+.+.+++.+||+++||-...-++=|...+.+ .+.|++|.+|..
T Consensus 64 n~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 64 NKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 677777888899999999999999987655545555554 468999998654
No 25
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=89.99 E-value=13 Score=33.75 Aligned_cols=131 Identities=21% Similarity=0.166 Sum_probs=76.5
Q ss_pred EEEEeeccCCCceEEecC--CCe-EEccCCccCCCHHhHHHHHHHHHhhhhCCCceEEEEe--e-----------CCchh
Q 025565 5 VAIKRVVDYAVKIRVKSD--RTG-VETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVS--M-----------GPAQC 68 (251)
Q Consensus 5 V~~K~Vpd~~~~~~~~~~--~~~-~~~~~~~~~in~~d~~Ale~A~~lae~~~g~~V~al~--~-----------G~~~~ 68 (251)
+.+++-||-+..+++.++ ++. +-....... |..=.+.|-..-.+++. ...+|+++. + |.+-.
T Consensus 29 ~~~~~F~dGE~~v~i~~~v~g~~V~ivqs~~~~-n~~l~elll~~~alr~~-~a~~i~~ViPY~~YaRqDr~~~~ge~is 106 (301)
T PRK07199 29 IELHRFPDGESYVRLDSPVAGRTVVLVCSLDRP-DEKLLPLLFAAEAAREL-GARRVGLVAPYLAYMRQDIAFHPGEAIS 106 (301)
T ss_pred eEEEECCCCCEEEEECCCCCCCEEEEECCCCCC-cHHHHHHHHHHHHHHHc-CCCeEEEEeecccccccccccCCCCCcc
Confidence 457888998877777433 122 222222111 33112333333344554 234677763 2 32223
Q ss_pred HHHHHHHHHCCCCEEEEEeeCC--------CC----CHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcC
Q 025565 69 VDTLRTGLAMGADRGVHVEAAG--------QL----YPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLS 136 (251)
Q Consensus 69 ~~~l~~~la~GaD~vi~v~~~~--------~~----d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg 136 (251)
...+.+++..|+|+++.++-.. .+ +.......+++.+++...+.++++- |..+...+..+|.+||
T Consensus 107 ak~vA~ll~~~~d~vit~DlH~~~~~~~~~~f~ip~~nl~~~~~la~~l~~~~~~~vVVsP---d~g~~~~a~~la~~l~ 183 (301)
T PRK07199 107 QRHFARLLSGSFDRLVTVDPHLHRYPSLSEVYPIPAVVLSAAPAIAAWIRAHVPRPLLIGP---DEESEQWVAAVAERAG 183 (301)
T ss_pred HHHHHHHHHhhcCeEEEEeccchhhHHhcCcccCCccccchHHHHHHHHHhcCCCcEEEEe---CCChHHHHHHHHHHhC
Confidence 4456777778999999997321 11 3345567888888765456566653 4566678999999999
Q ss_pred CCcc
Q 025565 137 WPQG 140 (251)
Q Consensus 137 ~p~v 140 (251)
+|+.
T Consensus 184 ~~~~ 187 (301)
T PRK07199 184 APHA 187 (301)
T ss_pred CCEE
Confidence 9885
No 26
>PRK11175 universal stress protein UspE; Provisional
Probab=89.85 E-value=3.3 Score=36.70 Aligned_cols=97 Identities=26% Similarity=0.308 Sum_probs=60.8
Q ss_pred HHhHHHHHHHHHhhhhCC-CceEEEEeeCCc---------------h--------hHHHHHHHH-HCCCCEE-EEEeeCC
Q 025565 37 PFCEIALEEALRIKESGL-ASEVVAVSMGPA---------------Q--------CVDTLRTGL-AMGADRG-VHVEAAG 90 (251)
Q Consensus 37 ~~d~~Ale~A~~lae~~~-g~~V~al~~G~~---------------~--------~~~~l~~~l-a~GaD~v-i~v~~~~ 90 (251)
+++..+|+.|.++++. . +.+++.+.+-+. . ..+.+++.. .+|.+.. +++..+
T Consensus 170 ~~~~~al~~a~~la~~-~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~G- 247 (305)
T PRK11175 170 ALNEKLVEEAIDLAEQ-LNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLLAMKALRQKFGIDEEQTHVEEG- 247 (305)
T ss_pred HHHHHHHHHHHHHHhh-CcCCceEEEEEecCcchhccccccccchhhHHHHHHHHHHHHHHHHHHHhCCChhheeeccC-
Confidence 5567899999999987 5 778888865210 0 112233322 3566532 222211
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEcceeecCC----cCcHHHHHHHHcCCCcc
Q 025565 91 QLYPLTVAKILKSLVEVEKPGLIILGKQAIDDD----CNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 91 ~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~----~~~v~~~lA~~Lg~p~v 140 (251)
++ +..|.+.+++.++|+|++|.....+- -|.++-++..+..+|++
T Consensus 248 --~~---~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a~~v~~~~~~pVL 296 (305)
T PRK11175 248 --LP---EEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTAEHVIDHLNCDLL 296 (305)
T ss_pred --CH---HHHHHHHHHHhCCCEEEECCCccCCCcceeecchHHHHHhcCCCCEE
Confidence 22 35788889999999999999764432 24567777777777654
No 27
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=88.91 E-value=16 Score=33.43 Aligned_cols=132 Identities=13% Similarity=0.122 Sum_probs=76.5
Q ss_pred EEEEeeccCCCceEEecC--CCeE-EccCCccCCCHHhHHHHHHHHHhhhhCCCceEEEEe--e-----------CCc-h
Q 025565 5 VAIKRVVDYAVKIRVKSD--RTGV-ETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVS--M-----------GPA-Q 67 (251)
Q Consensus 5 V~~K~Vpd~~~~~~~~~~--~~~~-~~~~~~~~in~~d~~Ale~A~~lae~~~g~~V~al~--~-----------G~~-~ 67 (251)
+.+++-||-+..+++..+ +..+ -......-.|..=.+.|-.+-.+++. ...+|+++. + |.+ .
T Consensus 32 ~~~~~FpdGE~~v~i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~alr~~-~a~~i~~V~PYl~YaRQDr~~~~~e~is 110 (320)
T PRK02269 32 SSVRQFSDGEIQVNIEESIRGHHVFILQSTSSPVNDNLMEILIMVDALKRA-SAESINVVMPYYGYARQDRKARSREPIT 110 (320)
T ss_pred eEEEECCCCCEEEEECCCCCCCEEEEEecCCCCccchHHHHHHHHHHHHHh-CCCeEEEEEeccccchhhcccCCCCCch
Confidence 457888998766666432 1121 22222222233333344444455554 234676663 1 222 2
Q ss_pred hHHHHHHHHHCCCCEEEEEeeCC---------CCCHHHHHHHHHHHHHHhC---CCEEEEcceeecCCcCcHHHHHHHHc
Q 025565 68 CVDTLRTGLAMGADRGVHVEAAG---------QLYPLTVAKILKSLVEVEK---PGLIILGKQAIDDDCNQTGQMVAGLL 135 (251)
Q Consensus 68 ~~~~l~~~la~GaD~vi~v~~~~---------~~d~~a~a~~La~~ik~~~---~dlIl~G~~s~d~~~~~v~~~lA~~L 135 (251)
+.-..+-+-++|+|+++.++-.. ..+....+..+++.+++.+ .+.++++- |..+-..+..+|..|
T Consensus 111 ak~~a~ll~~~g~d~vit~D~H~~~~~~~f~~p~~~l~~~p~l~~~i~~~~~~~~~~vvVsP---d~G~~~~A~~lA~~l 187 (320)
T PRK02269 111 SKLVANMLEVAGVDRLLTVDLHAAQIQGFFDIPVDHLMGAPLIADYFDRRGLVGDDVVVVSP---DHGGVTRARKLAQFL 187 (320)
T ss_pred HHHHHHHHhhcCCCEEEEECCChHHHhccccCCchhhhhHHHHHHHHHHhCCCCCCcEEEEE---CccHHHHHHHHHHHh
Confidence 33344555567999999998321 1244566678888887654 35666655 456678999999999
Q ss_pred CCCcc
Q 025565 136 SWPQG 140 (251)
Q Consensus 136 g~p~v 140 (251)
|+|+.
T Consensus 188 g~~~~ 192 (320)
T PRK02269 188 KTPIA 192 (320)
T ss_pred CCCEE
Confidence 99975
No 28
>PRK10481 hypothetical protein; Provisional
Probab=88.87 E-value=3.5 Score=35.93 Aligned_cols=85 Identities=7% Similarity=-0.091 Sum_probs=61.2
Q ss_pred CceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHH
Q 025565 55 ASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGL 134 (251)
Q Consensus 55 g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~ 134 (251)
|.++-+++--++......++-..+|.+-.+...++-. .+.......++.++..++|+|+++++. .+.+....+...
T Consensus 129 g~riGVitP~~~qi~~~~~kw~~~G~~v~~~~aspy~-~~~~~l~~aa~~L~~~gaD~Ivl~C~G---~~~~~~~~le~~ 204 (224)
T PRK10481 129 GHQVGVIVPVEEQLAQQAQKWQVLQKPPVFALASPYH-GSEEELIDAGKELLDQGADVIVLDCLG---YHQRHRDLLQKA 204 (224)
T ss_pred CCeEEEEEeCHHHHHHHHHHHHhcCCceeEeecCCCC-CCHHHHHHHHHHhhcCCCCEEEEeCCC---cCHHHHHHHHHH
Confidence 5588888888887788889999999987766653322 222223334444445689999999974 333789999999
Q ss_pred cCCCcccce
Q 025565 135 LSWPQGTFA 143 (251)
Q Consensus 135 Lg~p~vt~v 143 (251)
||.|++...
T Consensus 205 lg~PVI~~n 213 (224)
T PRK10481 205 LDVPVLLSN 213 (224)
T ss_pred HCcCEEcHH
Confidence 999998654
No 29
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=88.74 E-value=1.6 Score=41.43 Aligned_cols=51 Identities=12% Similarity=0.078 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHH----HHcCCCcccce
Q 025565 93 YPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVA----GLLSWPQGTFA 143 (251)
Q Consensus 93 d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA----~~Lg~p~vt~v 143 (251)
+.+...+-+.+.+++.+||+++||-...-++=|...+.+| +.||+|.+|..
T Consensus 60 n~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 60 NLEEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 5677778889999999999999999886665566655555 56999998765
No 30
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=88.28 E-value=15 Score=33.46 Aligned_cols=130 Identities=14% Similarity=0.072 Sum_probs=73.7
Q ss_pred EEEEeeccCCCceEEecC--CCe-EEccCCccCCCHHhHHHHHHHHHhhhhCCCceEEEEe--eCC------------ch
Q 025565 5 VAIKRVVDYAVKIRVKSD--RTG-VETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVS--MGP------------AQ 67 (251)
Q Consensus 5 V~~K~Vpd~~~~~~~~~~--~~~-~~~~~~~~~in~~d~~Ale~A~~lae~~~g~~V~al~--~G~------------~~ 67 (251)
+.+|+-||-+..+++..+ ++. +-......-.|..=.+.|-.+-.+++. ...+|+++. +|- -.
T Consensus 16 ~~~~~F~DGE~~vri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~-~a~~i~~ViPYl~YaRQDr~~~~~e~is 94 (304)
T PRK03092 16 TTAYDFANGEIYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRA-SAKRITVVLPFYPYARQDKKHRGREPIS 94 (304)
T ss_pred eEEEECCCCCEEEEECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHc-CCCeEEEEEecccccccccccCCCCCcc
Confidence 568899998866777433 122 222222222233323444444455554 233677663 222 22
Q ss_pred hHHHHHHHHHCCCCEEEEEeeCC----C-C----CHHHHHHHHHHHHHHh--CCCEEEEcceeecCCcCcHHHHHHHHcC
Q 025565 68 CVDTLRTGLAMGADRGVHVEAAG----Q-L----YPLTVAKILKSLVEVE--KPGLIILGKQAIDDDCNQTGQMVAGLLS 136 (251)
Q Consensus 68 ~~~~l~~~la~GaD~vi~v~~~~----~-~----d~~a~a~~La~~ik~~--~~dlIl~G~~s~d~~~~~v~~~lA~~Lg 136 (251)
+.-.++.+-++|+|+++.++-.. . + +....+..+++.+++. ..+.++++- |..+-..+..+|..|+
T Consensus 95 ak~va~lL~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~la~~i~~~~~~~~~vvVsp---d~Ga~~~a~~la~~L~ 171 (304)
T PRK03092 95 ARLVADLFKTAGADRIMTVDLHTAQIQGFFDGPVDHLFAMPLLADYVRDKYDLDNVTVVSP---DAGRVRVAEQWADRLG 171 (304)
T ss_pred HHHHHHHHHhcCCCeEEEEecChHHHHhhcCCCeeeEechHHHHHHHHHhcCCCCcEEEEe---cCchHHHHHHHHHHcC
Confidence 33344555567999999998422 1 2 2234456677777553 356677655 4566678999999999
Q ss_pred -CC
Q 025565 137 -WP 138 (251)
Q Consensus 137 -~p 138 (251)
.|
T Consensus 172 ~~~ 174 (304)
T PRK03092 172 GAP 174 (304)
T ss_pred CCC
Confidence 66
No 31
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.11 E-value=0.74 Score=38.30 Aligned_cols=64 Identities=19% Similarity=0.146 Sum_probs=40.0
Q ss_pred HCCCCEEEEEeeCCC-CCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcH----HHHHHHHcCCCcc
Q 025565 77 AMGADRGVHVEAAGQ-LYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQT----GQMVAGLLSWPQG 140 (251)
Q Consensus 77 a~GaD~vi~v~~~~~-~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v----~~~lA~~Lg~p~v 140 (251)
|||.=-++-+..... .+..-+-+.|..-+--++||+||||+.+.=-+-++| +..||.++|+|++
T Consensus 91 AMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYf 159 (219)
T KOG0081|consen 91 AMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYF 159 (219)
T ss_pred hccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCee
Confidence 677766665554332 233333333333334458999999998743343433 6789999999986
No 32
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=87.48 E-value=5.5 Score=37.17 Aligned_cols=94 Identities=11% Similarity=-0.003 Sum_probs=57.9
Q ss_pred CCHHhHHHHHHHHHhhhhC-CCceEEEEeeCCc------------hhHHHHHHHHH----------CCCCEEEEEe-eCC
Q 025565 35 MNPFCEIALEEALRIKESG-LASEVVAVSMGPA------------QCVDTLRTGLA----------MGADRGVHVE-AAG 90 (251)
Q Consensus 35 in~~d~~Ale~A~~lae~~-~g~~V~al~~G~~------------~~~~~l~~~la----------~GaD~vi~v~-~~~ 90 (251)
-++.+..|+++|.+++... .+.+++.+.+-+. .+++.+.++.+ .|..--..+. .+.
T Consensus 14 GSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~~~~~gV~ve~~vv~~~~ 93 (357)
T PRK12652 14 DSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLGDDASSVTIETALLGTDE 93 (357)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCceEEEEEeccc
Confidence 3678899999999999862 1478888876532 11122222222 2655333332 111
Q ss_pred -CCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHH
Q 025565 91 -QLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTG 128 (251)
Q Consensus 91 -~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~ 128 (251)
.+.+-..+..|.+.+++.+.|+|++|....-+.+.++-
T Consensus 94 ~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~~~~~~ 132 (357)
T PRK12652 94 YLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGGTAPML 132 (357)
T ss_pred cccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCccc
Confidence 11222447889999999999999999987665544443
No 33
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=87.24 E-value=3 Score=38.95 Aligned_cols=95 Identities=19% Similarity=0.213 Sum_probs=56.0
Q ss_pred CCHHhHHHHHHHHHhhhhCCCceEE-EEeeCCchhHHHHHHHHHCCCCEEEEEeeCC----------CCCHHHHHHHHHH
Q 025565 35 MNPFCEIALEEALRIKESGLASEVV-AVSMGPAQCVDTLRTGLAMGADRGVHVEAAG----------QLYPLTVAKILKS 103 (251)
Q Consensus 35 in~~d~~Ale~A~~lae~~~g~~V~-al~~G~~~~~~~l~~~la~GaD~vi~v~~~~----------~~d~~a~a~~La~ 103 (251)
.||.+ +.+..++++++ .|-++- |+.-|+ ...+.+++.++-|.. .-.++... ..+.+.=+.-|++
T Consensus 81 ~np~~--~a~~v~eia~e-~Gl~lkvA~V~gD-d~~~~v~~~~~~g~~-~~~l~~~~~l~~~~~~~~~a~aylGa~pI~~ 155 (362)
T PF07287_consen 81 LNPAG--CADIVREIARE-LGLSLKVAVVYGD-DLKDEVKELLAEGET-IRPLDTGPPLSEWDDRIVSANAYLGAEPIVE 155 (362)
T ss_pred CCHHH--HHHHHHHHHHh-cCCCeeEEEEECc-cchHhHHHHHhCCCC-CccCCCCCCcchhccccceEEEecChHHHHH
Confidence 58866 57777788776 454443 333354 456777777775532 11111100 1122222455666
Q ss_pred HHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCC
Q 025565 104 LVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWP 138 (251)
Q Consensus 104 ~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p 138 (251)
++++ ++|+|+||+.+ |...+.+-++.++||.
T Consensus 156 AL~~-GADIVI~GR~~---D~Al~~a~~~~~~GW~ 186 (362)
T PF07287_consen 156 ALEA-GADIVITGRVA---DPALFAAPAIHEFGWS 186 (362)
T ss_pred HHHc-CCCEEEeCccc---chHHHHhHHHHHcCCC
Confidence 6654 79999999987 6667777777777775
No 34
>PRK11175 universal stress protein UspE; Provisional
Probab=87.13 E-value=4.1 Score=36.11 Aligned_cols=100 Identities=14% Similarity=0.000 Sum_probs=57.5
Q ss_pred CCHHhHHHHHHHHHhhhhCCCceEEEEeeCC------------ch-----------hHHHHHHHH----HCCCCEEEEEe
Q 025565 35 MNPFCEIALEEALRIKESGLASEVVAVSMGP------------AQ-----------CVDTLRTGL----AMGADRGVHVE 87 (251)
Q Consensus 35 in~~d~~Ale~A~~lae~~~g~~V~al~~G~------------~~-----------~~~~l~~~l----a~GaD~vi~v~ 87 (251)
.++.+..|+..|++|++. .+.+++.+..=+ .. ..+.+++.. ..|.+--..+.
T Consensus 12 ~s~~~~~al~~a~~lA~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 90 (305)
T PRK11175 12 PNQDDQPALRRAVYLAQR-NGGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIREQAKPYLDAGIPIEIKVV 90 (305)
T ss_pred CCccccHHHHHHHHHHHh-cCCCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEe
Confidence 355678999999999997 577887664311 00 011123322 34554433332
Q ss_pred eCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCc----CcHHHHHHHHcCCCcc
Q 025565 88 AAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDC----NQTGQMVAGLLSWPQG 140 (251)
Q Consensus 88 ~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~----~~v~~~lA~~Lg~p~v 140 (251)
.. + ++ +..|.+.+++.++|||++|....++-. |.+.-++.....+|++
T Consensus 91 ~~-g-~~---~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvl 142 (305)
T PRK11175 91 WH-N-RP---FEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVL 142 (305)
T ss_pred cC-C-Cc---HHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEE
Confidence 11 1 22 467888888899999999987533211 2344455555556643
No 35
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=87.09 E-value=2.6 Score=40.04 Aligned_cols=51 Identities=10% Similarity=0.035 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHH----HHcCCCcccce
Q 025565 93 YPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVA----GLLSWPQGTFA 143 (251)
Q Consensus 93 d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA----~~Lg~p~vt~v 143 (251)
+.+...+-+.+.+++.+||+++||-...-++=|...+.+| +.||+|.+|..
T Consensus 60 n~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 60 NLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 5777778889999999999999999886665566666555 56999998765
No 36
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=87.09 E-value=18 Score=32.97 Aligned_cols=132 Identities=15% Similarity=0.094 Sum_probs=73.6
Q ss_pred EEEEeeccCCCceEEecC--CCeE-EccCCccCCCHHhHHHHHHHHHhhhhCCCceEEEEe--e-----------CCc-h
Q 025565 5 VAIKRVVDYAVKIRVKSD--RTGV-ETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVS--M-----------GPA-Q 67 (251)
Q Consensus 5 V~~K~Vpd~~~~~~~~~~--~~~~-~~~~~~~~in~~d~~Ale~A~~lae~~~g~~V~al~--~-----------G~~-~ 67 (251)
+.+|+-||-+..+++..+ ++.+ -........|..=.+.+-.+-.+++. ...+|+++. + |.. .
T Consensus 27 ~~~~~FpdGE~~vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~-ga~~i~lViPYl~YsRQDr~~~~ge~is 105 (309)
T PRK01259 27 ASVGRFSDGEISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRA-SAGRITAVIPYFGYARQDRKARSRVPIT 105 (309)
T ss_pred eEEEECCCCCEEEEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHc-CCceEEEEeeccccchhhhhhccCCCch
Confidence 567889998866776432 1222 22222222244333344444455554 223576653 2 211 2
Q ss_pred hHHHHHHHHHCCCCEEEEEeeCC----C-C----CHHHHHHHHHHHHHHhC-CCEEEEcceeecCCcCcHHHHHHHHcCC
Q 025565 68 CVDTLRTGLAMGADRGVHVEAAG----Q-L----YPLTVAKILKSLVEVEK-PGLIILGKQAIDDDCNQTGQMVAGLLSW 137 (251)
Q Consensus 68 ~~~~l~~~la~GaD~vi~v~~~~----~-~----d~~a~a~~La~~ik~~~-~dlIl~G~~s~d~~~~~v~~~lA~~Lg~ 137 (251)
+.-..+-+-++|+|+++.++-.. . + +...-...+++.+++.+ .+.+++|- |..+-..+..+|..||+
T Consensus 106 ak~~a~lL~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~~~~~~~vvv~p---d~Gg~~~A~~la~~Lg~ 182 (309)
T PRK01259 106 AKLVANLLETAGADRVLTMDLHADQIQGFFDIPVDNLYGSPILLEDIKQKNLENLVVVSP---DVGGVVRARALAKRLDA 182 (309)
T ss_pred HHHHHHHHhhcCCCEEEEEcCChHHHcCcCCCCceeeeecHHHHHHHHhcCCCCcEEEEE---CCCcHHHHHHHHHHhCC
Confidence 33344555567999999998321 1 1 23334567788786643 23344443 45667899999999999
Q ss_pred Ccc
Q 025565 138 PQG 140 (251)
Q Consensus 138 p~v 140 (251)
|+.
T Consensus 183 ~~~ 185 (309)
T PRK01259 183 DLA 185 (309)
T ss_pred CEE
Confidence 876
No 37
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=86.83 E-value=4.4 Score=39.03 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=42.1
Q ss_pred HHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecC
Q 025565 43 LEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDD 122 (251)
Q Consensus 43 le~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~ 122 (251)
+..+..|.+. .|.++++++..... .+.+++....+-+..+++.+. +.. -+.+.+++.+||+++.|.
T Consensus 340 ~~~~~~l~~E-lGmevv~~~~~~~~-~~~~~~~~~~~~~~~i~i~d~---~~~----e~~~~~~~~~pDliig~s----- 405 (461)
T TIGR01860 340 WHWTKALEDD-LGMQVVAMSSKFGH-QEDFEKVIARGKEGTIYIDDG---NEL----EFFEVLDLIKPDVIFTGP----- 405 (461)
T ss_pred HHHHHHHHHh-CCCEEEEEeeecCC-HHHHHHHHHhcCCCeEEEeCC---CHH----HHHHHHHhcCCCEEEeCC-----
Confidence 3444455533 45555554433211 233344444444433344321 122 233456777999988654
Q ss_pred CcCcHHHHHHHHcCCCcc
Q 025565 123 DCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 123 ~~~~v~~~lA~~Lg~p~v 140 (251)
..-.+|.+||+|++
T Consensus 406 ----~~~~~A~klgiP~v 419 (461)
T TIGR01860 406 ----RVGELVKKLHIPYV 419 (461)
T ss_pred ----cchhhHhhcCCCEE
Confidence 34568999999997
No 38
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=86.34 E-value=7.9 Score=33.10 Aligned_cols=75 Identities=20% Similarity=0.171 Sum_probs=55.5
Q ss_pred hHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 39 CEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 39 d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
+++||-.|.+ ... .+.+|.+|.-..++ ...+..|..+|....++-. ....+-.++-..|.+.+++.+||+|++..
T Consensus 13 Nlqaiida~~-~~~-~~a~i~~Visd~~~-A~~lerA~~~gIpt~~~~~-k~~~~r~~~d~~l~~~l~~~~~dlvvLAG 87 (200)
T COG0299 13 NLQAIIDAIK-GGK-LDAEIVAVISDKAD-AYALERAAKAGIPTVVLDR-KEFPSREAFDRALVEALDEYGPDLVVLAG 87 (200)
T ss_pred cHHHHHHHHh-cCC-CCcEEEEEEeCCCC-CHHHHHHHHcCCCEEEecc-ccCCCHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 5677777766 333 45688888777654 4578899999999855532 22346788999999999999999998755
No 39
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=86.12 E-value=12 Score=30.80 Aligned_cols=102 Identities=9% Similarity=-0.024 Sum_probs=62.5
Q ss_pred CCccCCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCc--hhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHH
Q 025565 30 NVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPA--QCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEV 107 (251)
Q Consensus 30 ~~~~~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~--~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~ 107 (251)
.++..++..|+ +..-++.+++ .+.++. .+|+. ..+.+.+.+.+...+--+.-..+..++ ......+.+.|++
T Consensus 26 ~~~~rv~g~dl--~~~l~~~~~~-~~~~if--llG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~-~~~~~~i~~~I~~ 99 (172)
T PF03808_consen 26 PLPERVTGSDL--FPDLLRRAEQ-RGKRIF--LLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFD-EEEEEAIINRINA 99 (172)
T ss_pred CCCcccCHHHH--HHHHHHHHHH-cCCeEE--EEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCC-hhhHHHHHHHHHH
Confidence 34567888887 6666666766 455554 44543 233344455555444333322232333 3445666777888
Q ss_pred hCCCEEEEcceeecCCcCcHHHHHHHHcCCCc
Q 025565 108 EKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQ 139 (251)
Q Consensus 108 ~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~ 139 (251)
.+||+|++|-.+-.. -.+..+...+|+.++
T Consensus 100 ~~pdiv~vglG~PkQ--E~~~~~~~~~l~~~v 129 (172)
T PF03808_consen 100 SGPDIVFVGLGAPKQ--ERWIARHRQRLPAGV 129 (172)
T ss_pred cCCCEEEEECCCCHH--HHHHHHHHHHCCCCE
Confidence 899999999976443 368888888888883
No 40
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=86.03 E-value=4.8 Score=38.71 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCccc
Q 025565 100 ILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGT 141 (251)
Q Consensus 100 ~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 141 (251)
.+.+.+++.+||+++.|. -.-.+|.++|+|++.
T Consensus 386 e~~~~i~~~~pDllig~~---------~~~~~a~k~gip~~~ 418 (457)
T TIGR01284 386 ELEEIIEKYKPDIILTGI---------REGELAKKLGVPYIN 418 (457)
T ss_pred HHHHHHHhcCCCEEEecC---------CcchhhhhcCCCEEE
Confidence 345667778999998765 335689999999874
No 41
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=85.85 E-value=11 Score=29.09 Aligned_cols=51 Identities=12% Similarity=0.207 Sum_probs=35.9
Q ss_pred HHHHHHHHHCCCCEEEEEeeCC-CC---CHHHHHHHHHHHHHHhCCCEEEEccee
Q 025565 69 VDTLRTGLAMGADRGVHVEAAG-QL---YPLTVAKILKSLVEVEKPGLIILGKQA 119 (251)
Q Consensus 69 ~~~l~~~la~GaD~vi~v~~~~-~~---d~~a~a~~La~~ik~~~~dlIl~G~~s 119 (251)
.+..+.+-.+|+++.+.+.-+. .. +.....+.|++++++.+||+|++....
T Consensus 56 ~E~~~a~~~lGv~~~~~l~~~D~~~~~~~~~~~~~~l~~~i~~~~p~~V~t~~~~ 110 (128)
T PF02585_consen 56 AEARAAAEILGVENVIFLDFPDGQLPGWSWEELVRDLEDLIREFRPDVVFTPDPD 110 (128)
T ss_dssp HHHHHHHHHCT-EEEEEEEECTTSCTCHHHHHHHHHHHHHHHHH-ESEEEEE-ST
T ss_pred HHHHHHHHHcCCceEEEeecCCCCcccccHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 3445556678998888887543 22 367888999999999999999988743
No 42
>PRK10490 sensor protein KdpD; Provisional
Probab=85.84 E-value=6.9 Score=40.81 Aligned_cols=79 Identities=23% Similarity=0.266 Sum_probs=59.4
Q ss_pred CCHHhHHHHHHHHHhhhhCCCceEEEEeeCCch-----------hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHH
Q 025565 35 MNPFCEIALEEALRIKESGLASEVVAVSMGPAQ-----------CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKS 103 (251)
Q Consensus 35 in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~-----------~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~ 103 (251)
-+|.++.++..|.|||++ .+.+.+|+.+-.+. ..+.++-|-..|+. ++.+.++ ..+..|.+
T Consensus 259 ~~~~~~~lIr~~~rlA~~-~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~-~~~~~~~------dva~~i~~ 330 (895)
T PRK10490 259 HNTGSEKLVRTAARLAAR-LGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAE-TATLSDP------AEEKAVLR 330 (895)
T ss_pred CCcchHHHHHHHHHHHHh-cCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCE-EEEEeCC------CHHHHHHH
Confidence 368889999999999998 78899998886531 12234445568999 5555432 35689999
Q ss_pred HHHHhCCCEEEEcceeec
Q 025565 104 LVEVEKPGLIILGKQAID 121 (251)
Q Consensus 104 ~ik~~~~dlIl~G~~s~d 121 (251)
.++..+.+-|++|.+...
T Consensus 331 ~A~~~~vt~IViG~s~~~ 348 (895)
T PRK10490 331 YAREHNLGKIIIGRRASR 348 (895)
T ss_pred HHHHhCCCEEEECCCCCC
Confidence 999999999999997643
No 43
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=85.59 E-value=6.7 Score=32.25 Aligned_cols=77 Identities=21% Similarity=0.142 Sum_probs=53.0
Q ss_pred EEEEeeCCchhHH----HHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHH
Q 025565 58 VVAVSMGPAQCVD----TLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAG 133 (251)
Q Consensus 58 V~al~~G~~~~~~----~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~ 133 (251)
-+++.||+.+.-+ +...+-.+|.+--..|-. .+..|+..- ..++-.++.++.+|+.|. |...++|+++|.
T Consensus 4 ~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvS-AHRTPe~m~-~ya~~a~~~g~~viIAgA----GgAAHLPGmvAa 77 (162)
T COG0041 4 KVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVS-AHRTPEKMF-EYAEEAEERGVKVIIAGA----GGAAHLPGMVAA 77 (162)
T ss_pred eEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEe-ccCCHHHHH-HHHHHHHHCCCeEEEecC----cchhhcchhhhh
Confidence 4789999976333 344455689886655543 244555333 334445566999999998 357899999999
Q ss_pred HcCCCcc
Q 025565 134 LLSWPQG 140 (251)
Q Consensus 134 ~Lg~p~v 140 (251)
+--.|++
T Consensus 78 ~T~lPVi 84 (162)
T COG0041 78 KTPLPVI 84 (162)
T ss_pred cCCCCeE
Confidence 9988876
No 44
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=85.54 E-value=3.8 Score=42.41 Aligned_cols=83 Identities=18% Similarity=0.105 Sum_probs=51.9
Q ss_pred ccCCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCch-------------------------------hHHHHHHHHH-C-
Q 025565 32 KMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQ-------------------------------CVDTLRTGLA-M- 78 (251)
Q Consensus 32 ~~~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~-------------------------------~~~~l~~~la-~- 78 (251)
.+.=.|.|.|||++|.|+++. ++.++|++-+=+.+ .++.+++... +
T Consensus 636 ~F~GG~DDREALa~a~rma~~-p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~ 714 (832)
T PLN03159 636 LFFGGPDDREALAYAWRMSEH-PGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNA 714 (832)
T ss_pred EecCCcchHHHHHHHHHHhcC-CCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcC
Confidence 444578999999999999987 88888887662211 1122333222 1
Q ss_pred CCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcce
Q 025565 79 GADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQ 118 (251)
Q Consensus 79 GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~ 118 (251)
+-+++-..+ .--.|...+..+|.+... +|||++.|..
T Consensus 715 ~~~~v~y~E-~~V~~~~e~~~~l~~~~~--~ydL~iVGr~ 751 (832)
T PLN03159 715 GNESIVYTE-KVVSNGEETVAAIRSMDS--AHDLFIVGRG 751 (832)
T ss_pred CCCceEEEE-EecCCHHHHHHHHHHhhc--cCcEEEEecC
Confidence 224444443 112467777777765532 5999999983
No 45
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=84.26 E-value=27 Score=32.10 Aligned_cols=132 Identities=12% Similarity=0.101 Sum_probs=74.4
Q ss_pred EEEEeeccCCCceEEecC--CCe-EEccCCccCCCHHhHHHHHHHHHhhhhCCCceEEEEe--eCC-----------c-h
Q 025565 5 VAIKRVVDYAVKIRVKSD--RTG-VETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVS--MGP-----------A-Q 67 (251)
Q Consensus 5 V~~K~Vpd~~~~~~~~~~--~~~-~~~~~~~~~in~~d~~Ale~A~~lae~~~g~~V~al~--~G~-----------~-~ 67 (251)
+.+++-||-+..+++..+ +.. +-........|..=.+.+-.+-.+++. ...+|+++. +|- . +
T Consensus 36 ~~~~~FpdGE~~v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~alr~~-~a~~i~lViPYl~YaRQDr~~~~ge~is 114 (323)
T PRK02458 36 LSSRQFSDGEIMINIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDACKRA-SANTVNVVLPYFGYARQDRIAKPREPIT 114 (323)
T ss_pred eEEEECCCCCEEEEecCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHc-CCceEEEEEeccccchhhcccCCCCCch
Confidence 568888998866666432 112 222223222343323444444455554 233566653 221 1 2
Q ss_pred hHHHHHHHHHCCCCEEEEEeeCC----C-C----CHHHHHHHHHHHHHHhC---CCEEEEcceeecCCcCcHHHHHHHHc
Q 025565 68 CVDTLRTGLAMGADRGVHVEAAG----Q-L----YPLTVAKILKSLVEVEK---PGLIILGKQAIDDDCNQTGQMVAGLL 135 (251)
Q Consensus 68 ~~~~l~~~la~GaD~vi~v~~~~----~-~----d~~a~a~~La~~ik~~~---~dlIl~G~~s~d~~~~~v~~~lA~~L 135 (251)
+.-.++-+-++|+|+++.++-.. + + +....+..+++.+++.+ .++++.|- |..+-..+..+|.+|
T Consensus 115 ak~~a~lL~~~g~d~vitvD~H~~~i~~~F~~p~~nl~~~p~~~~~l~~~~~~~~~~vvV~p---d~Ga~~~A~~la~~L 191 (323)
T PRK02458 115 AKLVANMLVKAGVDRVLTLDLHAVQVQGFFDIPVDNLFTVPLFAKHYCKKGLSGSDVVVVSP---KNSGIKRARSLAEYL 191 (323)
T ss_pred HHHHHHHHhhcCCCeEEEEecCcHHhhccccCCceEEEEHHHHHHHHHHhCCCCCceEEEEE---CCChHHHHHHHHHHh
Confidence 33334444467999999998421 1 1 22233456777776543 45677665 557778999999999
Q ss_pred CCCcc
Q 025565 136 SWPQG 140 (251)
Q Consensus 136 g~p~v 140 (251)
|+|+.
T Consensus 192 ~~~~~ 196 (323)
T PRK02458 192 DAPIA 196 (323)
T ss_pred CCCEE
Confidence 99874
No 46
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=83.31 E-value=21 Score=31.74 Aligned_cols=92 Identities=25% Similarity=0.353 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhhhCCCceEEEEee----C----CchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCC
Q 025565 40 EIALEEALRIKESGLASEVVAVSM----G----PAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPG 111 (251)
Q Consensus 40 ~~Ale~A~~lae~~~g~~V~al~~----G----~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~d 111 (251)
.+.+..+.+.+.. .|.+|.+-.+ | ++...+.++++.++|+|++++.+.-....|..+.+.+..+.+.. +|
T Consensus 118 ~~~~~~~i~~ak~-~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~-~~ 195 (273)
T cd07941 118 LAMIRDSVAYLKS-HGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERL-PG 195 (273)
T ss_pred HHHHHHHHHHHHH-cCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhC-CC
Confidence 3344555555555 5667655333 3 12234566888999999988765444678998888887766654 55
Q ss_pred EEEEcceeecCCcCcHHHHHHHH
Q 025565 112 LIILGKQAIDDDCNQTGQMVAGL 134 (251)
Q Consensus 112 lIl~G~~s~d~~~~~v~~~lA~~ 134 (251)
+-| |-..-+..+-.++-.+|+.
T Consensus 196 ~~l-~~H~Hnd~Gla~An~laA~ 217 (273)
T cd07941 196 VPL-GIHAHNDSGLAVANSLAAV 217 (273)
T ss_pred Cee-EEEecCCCCcHHHHHHHHH
Confidence 443 3333333444455555544
No 47
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=83.18 E-value=12 Score=30.84 Aligned_cols=75 Identities=20% Similarity=0.180 Sum_probs=51.8
Q ss_pred EEeeCCch----hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHc
Q 025565 60 AVSMGPAQ----CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLL 135 (251)
Q Consensus 60 al~~G~~~----~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~L 135 (251)
++.||+.+ .+++...+-.+|.+--+.+.. .+..+..+.+.+.+ .++.++++|+++. |-.+.+|+.+|...
T Consensus 2 ~IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~S-aHRtp~~~~~~~~~-a~~~g~~viIa~A----G~aa~Lpgvva~~t 75 (156)
T TIGR01162 2 GIIMGSDSDLPTMKKAADILEEFGIPYELRVVS-AHRTPELMLEYAKE-AEERGIKVIIAGA----GGAAHLPGMVAALT 75 (156)
T ss_pred EEEECcHhhHHHHHHHHHHHHHcCCCeEEEEEC-cccCHHHHHHHHHH-HHHCCCeEEEEeC----CccchhHHHHHhcc
Confidence 57788764 344556666789997777663 24455554444433 3345789999887 34578999999999
Q ss_pred CCCcc
Q 025565 136 SWPQG 140 (251)
Q Consensus 136 g~p~v 140 (251)
..|++
T Consensus 76 ~~PVI 80 (156)
T TIGR01162 76 PLPVI 80 (156)
T ss_pred CCCEE
Confidence 99976
No 48
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=82.74 E-value=15 Score=34.98 Aligned_cols=32 Identities=22% Similarity=0.165 Sum_probs=25.2
Q ss_pred HHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 100 ILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 100 ~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
-+.+.+++.+||+++.+. ..-.+|.++|+|++
T Consensus 363 e~~~~l~~~~~dliiG~s---------~~~~~a~~~~ip~~ 394 (429)
T cd03466 363 DIESYAKELKIDVLIGNS---------YGRRIAEKLGIPLI 394 (429)
T ss_pred HHHHHHHhcCCCEEEECc---------hhHHHHHHcCCCEE
Confidence 455667777899999654 45689999999986
No 49
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=82.61 E-value=9.7 Score=37.23 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=24.7
Q ss_pred HHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 100 ILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 100 ~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
-+.+.+++.+||+||.+. ..-.+|.+||+|++
T Consensus 353 el~~~i~~~~PdliiG~~---------~er~~a~~lgiP~~ 384 (519)
T PRK02910 353 EVEDAIAEAAPELVLGTQ---------MERHSAKRLGIPCA 384 (519)
T ss_pred HHHHHHHhcCCCEEEEcc---------hHHHHHHHcCCCEE
Confidence 566777888999999322 55568999999986
No 50
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=82.07 E-value=7.2 Score=36.86 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=22.8
Q ss_pred HHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCccc
Q 025565 102 KSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGT 141 (251)
Q Consensus 102 a~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 141 (251)
.+.+++.+||+|+.+. ....+|.+||+|++.
T Consensus 351 ~~~~~~~~pdliig~s---------~~~~~a~~lgip~~~ 381 (415)
T cd01977 351 FEILEMLKPDIILTGP---------RVGELVKKLHVPYVN 381 (415)
T ss_pred HHHHHhcCCCEEEecC---------ccchhhhhcCCCEEe
Confidence 3455777999988655 233689999999874
No 51
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=81.92 E-value=7.5 Score=27.65 Aligned_cols=55 Identities=35% Similarity=0.336 Sum_probs=39.0
Q ss_pred CCHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEE
Q 025565 35 MNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLII 114 (251)
Q Consensus 35 in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl 114 (251)
-++.+..++..|.+++. .+.++++++++ ..-+.+.+.+++.+.|.|+
T Consensus 7 gg~dS~~~l~~~~~~~~--~~~~~~~~~~~-------------------------------~~~~~~~~~a~~~~~~~Iv 53 (86)
T cd01984 7 GGLDSSVLLHLAKRLKS--GGPEVVALVVV-------------------------------AFVRILKRLAAEEGADVII 53 (86)
T ss_pred CCHHHHHHHHHHHHHHh--cCCCEEEEEeH-------------------------------HHHHHHHHHHHHcCCCEEE
Confidence 45666677777777663 34567777766 4456777778888999999
Q ss_pred EcceeecC
Q 025565 115 LGKQAIDD 122 (251)
Q Consensus 115 ~G~~s~d~ 122 (251)
.|.+..|.
T Consensus 54 ~G~~~~d~ 61 (86)
T cd01984 54 LGHNADDV 61 (86)
T ss_pred EcCCchhh
Confidence 99987664
No 52
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=81.88 E-value=7.9 Score=37.83 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=24.3
Q ss_pred HHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 99 KILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 99 ~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
..+.+.+++.+||+||-+. ..-.+|.+||+|++
T Consensus 364 ~ei~~~I~~~~pdliiGs~---------~er~ia~~lgiP~~ 396 (513)
T CHL00076 364 TEVGDMIARVEPSAIFGTQ---------MERHIGKRLDIPCG 396 (513)
T ss_pred HHHHHHHHhcCCCEEEECc---------hhhHHHHHhCCCEE
Confidence 3555667778999999544 34456899999995
No 53
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=81.13 E-value=9.2 Score=37.30 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=25.2
Q ss_pred HHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 100 ILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 100 ~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
-+.+.+++.+||+||.+. ..-.+|.+||+|++
T Consensus 355 ei~~~i~~~~pdliiG~~---------~er~~a~~lgip~~ 386 (511)
T TIGR01278 355 EVADAIAALEPELVLGTQ---------MERHSAKRLDIPCG 386 (511)
T ss_pred HHHHHHHhcCCCEEEECh---------HHHHHHHHcCCCEE
Confidence 566677888999999544 55668999999986
No 54
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=80.98 E-value=18 Score=32.10 Aligned_cols=83 Identities=11% Similarity=0.078 Sum_probs=52.8
Q ss_pred CccCCCHHhHHHHHHHHHhhhhCCCceEEEEeeCC--chhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh
Q 025565 31 VKMSMNPFCEIALEEALRIKESGLASEVVAVSMGP--AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE 108 (251)
Q Consensus 31 ~~~~in~~d~~Ale~A~~lae~~~g~~V~al~~G~--~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~ 108 (251)
.+..++.+|+ ..+-++.+.+ .+.+|. .+|. +.++++...+-+...--.|.-.++.-+++..- .++.+.|++.
T Consensus 87 ~~~rv~G~Dl--~~~Ll~~a~~-~~~~vf--llGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~-~~i~~~I~~s 160 (253)
T COG1922 87 LPERVAGTDL--VEALLKRAAE-EGKRVF--LLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEE-EAIVERIAAS 160 (253)
T ss_pred CcccCChHHH--HHHHHHHhCc-cCceEE--EecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhH-HHHHHHHHhc
Confidence 5567888886 5555555554 344554 4554 33455555566655544444444444555554 6888889999
Q ss_pred CCCEEEEccee
Q 025565 109 KPGLIILGKQA 119 (251)
Q Consensus 109 ~~dlIl~G~~s 119 (251)
+||+++.|..+
T Consensus 161 ~pdil~VgmG~ 171 (253)
T COG1922 161 GPDILLVGMGV 171 (253)
T ss_pred CCCEEEEeCCC
Confidence 99999999854
No 55
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=80.78 E-value=19 Score=33.35 Aligned_cols=97 Identities=19% Similarity=0.105 Sum_probs=59.7
Q ss_pred CCHHhHHHHH-HHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCC-----CCHHHHHHHHHHHHHHh
Q 025565 35 MNPFCEIALE-EALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQ-----LYPLTVAKILKSLVEVE 108 (251)
Q Consensus 35 in~~d~~Ale-~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~-----~d~~a~a~~La~~ik~~ 108 (251)
.||.-..... ...+|.+ .|.+|...+=......+.++ .||.+-..+-..... .....-...|...+++.
T Consensus 8 ~~p~hvhfFk~~I~eL~~--~GheV~it~R~~~~~~~LL~---~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~ 82 (335)
T PF04007_consen 8 THPAHVHFFKNIIRELEK--RGHEVLITARDKDETEELLD---LYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKKF 82 (335)
T ss_pred CCchHHHHHHHHHHHHHh--CCCEEEEEEeccchHHHHHH---HcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555444433 3344554 37787777766543333333 679997776553221 11223344566777888
Q ss_pred CCCEEEEcceeecCCcCcHHHHHHHHcCCCcccce
Q 025565 109 KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFA 143 (251)
Q Consensus 109 ~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 143 (251)
+||+++++++ --++++|..||+|++...
T Consensus 83 ~pDv~is~~s-------~~a~~va~~lgiP~I~f~ 110 (335)
T PF04007_consen 83 KPDVAISFGS-------PEAARVAFGLGIPSIVFN 110 (335)
T ss_pred CCCEEEecCc-------HHHHHHHHHhCCCeEEEe
Confidence 9999997653 367899999999998544
No 56
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=80.63 E-value=44 Score=30.29 Aligned_cols=132 Identities=17% Similarity=0.146 Sum_probs=72.4
Q ss_pred EEEEeeccCCCceEEecCC--Ce-EEc-cCCccCCCHHhHHHHHHHHHhhhhCCCceEEEEe--e-----------CC-c
Q 025565 5 VAIKRVVDYAVKIRVKSDR--TG-VET-NNVKMSMNPFCEIALEEALRIKESGLASEVVAVS--M-----------GP-A 66 (251)
Q Consensus 5 V~~K~Vpd~~~~~~~~~~~--~~-~~~-~~~~~~in~~d~~Ale~A~~lae~~~g~~V~al~--~-----------G~-~ 66 (251)
+.+++-||-+..+++..+- .. +-. .....-.|..=.+.+-.+-.+++. ...+|+++. + |. -
T Consensus 27 ~~~~~FpdGE~~v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~~-ga~~i~~v~PYl~Y~RqDr~~~~ge~i 105 (308)
T TIGR01251 27 VEVKRFPDGELYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMIDALKRA-SAKSITAVIPYYGYARQDKKFKSREPI 105 (308)
T ss_pred eEEEECCCCCEEEEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHHHHHHc-CCCeEEEEEEecccchhccccCCCCCc
Confidence 5678899988666764321 11 111 222111233223444444445554 223566653 2 21 1
Q ss_pred hhHHHHHHHHHCCCCEEEEEeeCC-----C----CCHHHHHHHHHHHHHHh-CCCEEEEcceeecCCcCcHHHHHHHHcC
Q 025565 67 QCVDTLRTGLAMGADRGVHVEAAG-----Q----LYPLTVAKILKSLVEVE-KPGLIILGKQAIDDDCNQTGQMVAGLLS 136 (251)
Q Consensus 67 ~~~~~l~~~la~GaD~vi~v~~~~-----~----~d~~a~a~~La~~ik~~-~~dlIl~G~~s~d~~~~~v~~~lA~~Lg 136 (251)
.+.-..+-+-++|+|+++.++-.. . .+....+..|++.+++. ..+.+++|- |..+-..+..+|..||
T Consensus 106 s~~~~a~ll~~~g~d~vit~DlHs~~~~~~f~ip~~~l~a~~~l~~~i~~~~~~~~viv~p---d~g~~~~A~~lA~~Lg 182 (308)
T TIGR01251 106 SAKLVANLLETAGADRVLTVDLHSPQIQGFFDVPVDNLYASPVLAEYLKKKILDNPVVVSP---DAGGVERAKKVADALG 182 (308)
T ss_pred hHHHHHHHHHHcCCCEEEEecCChHHhcCcCCCceecccCHHHHHHHHHhhCCCCCEEEEE---CCchHHHHHHHHHHhC
Confidence 233344555577999999997321 1 12334456677777654 334555554 3455679999999999
Q ss_pred CCcc
Q 025565 137 WPQG 140 (251)
Q Consensus 137 ~p~v 140 (251)
.|+.
T Consensus 183 ~~~~ 186 (308)
T TIGR01251 183 CPLA 186 (308)
T ss_pred CCEE
Confidence 8874
No 57
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=80.28 E-value=11 Score=30.86 Aligned_cols=76 Identities=22% Similarity=0.237 Sum_probs=44.5
Q ss_pred EEEeeCCch----hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHH
Q 025565 59 VAVSMGPAQ----CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGL 134 (251)
Q Consensus 59 ~al~~G~~~----~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~ 134 (251)
+++.||+.+ +++..+.+-.+|..--+.+.. .+..++.+.+.+.++ ++.++++|+++.- ..+.+|+.+|..
T Consensus 3 V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~s-aHR~p~~l~~~~~~~-~~~~~~viIa~AG----~~a~Lpgvva~~ 76 (150)
T PF00731_consen 3 VAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVAS-AHRTPERLLEFVKEY-EARGADVIIAVAG----MSAALPGVVASL 76 (150)
T ss_dssp EEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE---TTTSHHHHHHHHHHT-TTTTESEEEEEEE----SS--HHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEe-ccCCHHHHHHHHHHh-ccCCCEEEEEECC----Ccccchhhheec
Confidence 567788764 344455566789665555553 244555443333222 2246898888773 356799999999
Q ss_pred cCCCcc
Q 025565 135 LSWPQG 140 (251)
Q Consensus 135 Lg~p~v 140 (251)
...|+|
T Consensus 77 t~~PVI 82 (150)
T PF00731_consen 77 TTLPVI 82 (150)
T ss_dssp SSS-EE
T ss_pred cCCCEE
Confidence 999976
No 58
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=80.21 E-value=16 Score=32.90 Aligned_cols=48 Identities=10% Similarity=-0.004 Sum_probs=33.0
Q ss_pred HHHHHHHHCCCCEEEEEeeCCC-----------------CCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 70 DTLRTGLAMGADRGVHVEAAGQ-----------------LYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 70 ~~l~~~la~GaD~vi~v~~~~~-----------------~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
+..+.|-.+|++..++--.|.. .+....+..|++++++.+||+|++-.
T Consensus 65 E~~~Aa~~LGv~~~~Lg~~Dsgl~~~~~~~~~~~~~~~~~~~~~~~~~L~~iIr~~~PdvVvT~d 129 (283)
T TIGR03446 65 EMAEAAEILGVEHRWLGFVDSGLPEGDPLPPLPEGCFALEPLEEAAEPLVRVIREFRPHVITTYD 129 (283)
T ss_pred HHHHHHHHcCCCeEEeccccCCccccCccccCCccccccCCHHHHHHHHHHHHHHcCCEEEEecC
Confidence 3445677799987553111111 25677889999999999999998853
No 59
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=79.84 E-value=20 Score=34.08 Aligned_cols=32 Identities=28% Similarity=0.245 Sum_probs=24.1
Q ss_pred HHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 100 ILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 100 ~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
-+.+.+++.+||+++-+. -.-.+|.+||+|++
T Consensus 368 e~~~~i~~~~pDliiG~s---------~~~~~a~~~gip~v 399 (435)
T cd01974 368 HLRSLLFTEPVDLLIGNT---------YGKYIARDTDIPLV 399 (435)
T ss_pred HHHHHHhhcCCCEEEECc---------cHHHHHHHhCCCEE
Confidence 345566777899987443 45689999999986
No 60
>PRK06849 hypothetical protein; Provisional
Probab=78.69 E-value=12 Score=34.75 Aligned_cols=70 Identities=20% Similarity=0.147 Sum_probs=52.8
Q ss_pred HHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcce
Q 025565 41 IALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQ 118 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~ 118 (251)
.++..|+.+++. |.+|+++..-+.. +- .....+|+-+.+..+ ..|...|.+.|.++++++++|+|+.+..
T Consensus 16 ~~l~iar~l~~~--G~~Vi~~d~~~~~----~~-~~s~~~d~~~~~p~p-~~d~~~~~~~L~~i~~~~~id~vIP~~e 85 (389)
T PRK06849 16 AALELARLFHNA--GHTVILADSLKYP----LS-RFSRAVDGFYTIPSP-RWDPDAYIQALLSIVQRENIDLLIPTCE 85 (389)
T ss_pred HHHHHHHHHHHC--CCEEEEEeCCchH----HH-HHHHhhhheEEeCCC-CCCHHHHHHHHHHHHHHcCCCEEEECCh
Confidence 578999999985 7788887665422 11 334467888877533 5678899999999999999999998764
No 61
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=78.08 E-value=24 Score=26.90 Aligned_cols=96 Identities=11% Similarity=0.059 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCC-CCHHHHHHHHHHHHHHhCCCEEEEcce
Q 025565 40 EIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQ-LYPLTVAKILKSLVEVEKPGLIILGKQ 118 (251)
Q Consensus 40 ~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~-~d~~a~a~~La~~ik~~~~dlIl~G~~ 118 (251)
......+..|+++ |-+|+.++.+++. .. .....|. +++.+..+.. .-.......+...+++.+||+|.+-..
T Consensus 11 ~~~~~~~~~L~~~--g~~V~ii~~~~~~-~~---~~~~~~i-~~~~~~~~~k~~~~~~~~~~l~k~ik~~~~DvIh~h~~ 83 (139)
T PF13477_consen 11 TFIYNLAKELKKR--GYDVHIITPRNDY-EK---YEIIEGI-KVIRLPSPRKSPLNYIKYFRLRKIIKKEKPDVIHCHTP 83 (139)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEcCCCc-hh---hhHhCCe-EEEEecCCCCccHHHHHHHHHHHHhccCCCCEEEEecC
Confidence 3567778889885 7899999997653 11 1223444 4555542221 111122346778889999999988764
Q ss_pred eecCCcCcHHHHHHHHcC-CCcccceee
Q 025565 119 AIDDDCNQTGQMVAGLLS-WPQGTFASK 145 (251)
Q Consensus 119 s~d~~~~~v~~~lA~~Lg-~p~vt~v~~ 145 (251)
.. .+-++...+..++ .|.+..+-+
T Consensus 84 ~~---~~~~~~l~~~~~~~~~~i~~~hg 108 (139)
T PF13477_consen 84 SP---YGLFAMLAKKLLKNKKVIYTVHG 108 (139)
T ss_pred Ch---HHHHHHHHHHHcCCCCEEEEecC
Confidence 31 1234444556666 777755443
No 62
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=77.98 E-value=10 Score=37.12 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=22.8
Q ss_pred HHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 103 SLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 103 ~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
+.+++.+||+++.|.. +-.+|.+||+|++
T Consensus 392 ~~l~~~~~Dllig~s~---------~~~~A~k~gIP~l 420 (513)
T TIGR01861 392 EAMEMLKPDIILTGKR---------PGEVSKKMRVPYL 420 (513)
T ss_pred HHHHhcCCCEEEecCc---------cchhHhhcCCCEE
Confidence 4567779999997763 2378999999995
No 63
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=77.88 E-value=20 Score=32.34 Aligned_cols=47 Identities=11% Similarity=0.073 Sum_probs=33.8
Q ss_pred HHHHHHHHHCCCCEEEEEee-----CCC---------------CCHHHHHHHHHHHHHHhCCCEEEE
Q 025565 69 VDTLRTGLAMGADRGVHVEA-----AGQ---------------LYPLTVAKILKSLVEVEKPGLIIL 115 (251)
Q Consensus 69 ~~~l~~~la~GaD~vi~v~~-----~~~---------------~d~~a~a~~La~~ik~~~~dlIl~ 115 (251)
+|..+.|-.+|++..+.+.. |.. .+.......|++++++.+||+|++
T Consensus 63 ~E~~~Aa~~LGv~~~~~L~~~~~~~Dsgl~~~p~~~~~~~~~~~~~~e~~~~l~~~Ir~~~PdvViT 129 (284)
T TIGR03445 63 GELTAALRALGVGDPRFLGGAGRWRDSGMAGTPSRSRPRAFVDADVDEAAGALVAVIREVRPHVVVT 129 (284)
T ss_pred HHHHHHHHHcCCCeEEEcCCcCcccCCCCCCCCcccCccccccCCHHHHHHHHHHHHHHhCCcEEEe
Confidence 44556677899998776642 110 123567889999999999999998
No 64
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=77.60 E-value=34 Score=33.50 Aligned_cols=97 Identities=18% Similarity=0.131 Sum_probs=58.7
Q ss_pred HHHHHHHHhhhhCCCceE-EEE--eeCCch----hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEE
Q 025565 41 IALEEALRIKESGLASEV-VAV--SMGPAQ----CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLI 113 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V-~al--~~G~~~----~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlI 113 (251)
..++.+.+...+ .|..+ .++ ++++.. ..+.++++.++|+|++.+.+.-....|..+...+.++-+..++++-
T Consensus 124 ~nl~~ai~~vk~-ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ip 202 (499)
T PRK12330 124 RNLEHAMKAVKK-VGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTR 202 (499)
T ss_pred HHHHHHHHHHHH-hCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCe
Confidence 556666666665 46555 344 447643 2345788999999987776543457888887777776665555655
Q ss_pred EEcceeecCCcCcHHHHHHH-HcCCCc
Q 025565 114 ILGKQAIDDDCNQTGQMVAG-LLSWPQ 139 (251)
Q Consensus 114 l~G~~s~d~~~~~v~~~lA~-~Lg~p~ 139 (251)
+-=++-.+ .|-.++-.+|+ ..|+-.
T Consensus 203 I~~H~Hnt-~GlA~An~laAieAGad~ 228 (499)
T PRK12330 203 INLHCHST-TGVTLVSLMKAIEAGVDV 228 (499)
T ss_pred EEEEeCCC-CCcHHHHHHHHHHcCCCE
Confidence 54444333 34445555543 455443
No 65
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=77.25 E-value=12 Score=34.25 Aligned_cols=76 Identities=16% Similarity=0.122 Sum_probs=43.7
Q ss_pred HHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCc
Q 025565 45 EALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDC 124 (251)
Q Consensus 45 ~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~ 124 (251)
.|.||+.. .|..+++++..++ +.. .+.++|||.++...++ | ++..+.++....++|+|+-.. +
T Consensus 158 ~aiQlAk~-~G~~~v~~~~s~~---k~~-~~~~lGAd~vi~y~~~---~---~~~~v~~~t~g~gvDvv~D~v------G 220 (326)
T COG0604 158 AAIQLAKA-LGATVVAVVSSSE---KLE-LLKELGADHVINYREE---D---FVEQVRELTGGKGVDVVLDTV------G 220 (326)
T ss_pred HHHHHHHH-cCCcEEEEecCHH---HHH-HHHhcCCCEEEcCCcc---c---HHHHHHHHcCCCCceEEEECC------C
Confidence 45666666 5555555554432 222 6777888888874421 2 566666666656799999433 3
Q ss_pred CcHHHHHHHHcCC
Q 025565 125 NQTGQMVAGLLSW 137 (251)
Q Consensus 125 ~~v~~~lA~~Lg~ 137 (251)
++...+.-..|..
T Consensus 221 ~~~~~~~l~~l~~ 233 (326)
T COG0604 221 GDTFAASLAALAP 233 (326)
T ss_pred HHHHHHHHHHhcc
Confidence 3444444444443
No 66
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=76.71 E-value=21 Score=34.17 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=23.4
Q ss_pred HHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCccc
Q 025565 101 LKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGT 141 (251)
Q Consensus 101 La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 141 (251)
+.+.+++.+||+++.++ -+-.+|.+||+|++.
T Consensus 379 ~~~~i~~~~pdllig~s---------~~~~~A~~lgip~~~ 410 (443)
T TIGR01862 379 FEEILEKLKPDIIFSGI---------KEKFVAQKLGVPYRQ 410 (443)
T ss_pred HHHHHHhcCCCEEEEcC---------cchhhhhhcCCCeEe
Confidence 34456777999888544 345689999999974
No 67
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=76.38 E-value=8 Score=29.45 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=37.6
Q ss_pred HHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 025565 45 EALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIIL 115 (251)
Q Consensus 45 ~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~ 115 (251)
.+.+++.. .|.+|+++...+ +-++.+..+|++.++.-+++ | +.+.+.++....++|+|+=
T Consensus 5 ~a~q~ak~-~G~~vi~~~~~~----~k~~~~~~~Ga~~~~~~~~~---~---~~~~i~~~~~~~~~d~vid 64 (130)
T PF00107_consen 5 MAIQLAKA-MGAKVIATDRSE----EKLELAKELGADHVIDYSDD---D---FVEQIRELTGGRGVDVVID 64 (130)
T ss_dssp HHHHHHHH-TTSEEEEEESSH----HHHHHHHHTTESEEEETTTS---S---HHHHHHHHTTTSSEEEEEE
T ss_pred HHHHHHHH-cCCEEEEEECCH----HHHHHHHhhccccccccccc---c---cccccccccccccceEEEE
Confidence 34566665 567888777553 34566778999988765422 2 3445555544457898884
No 68
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=76.33 E-value=18 Score=31.58 Aligned_cols=50 Identities=8% Similarity=0.199 Sum_probs=39.7
Q ss_pred HHHHHHHHHCCCCEEEEEeeCC---CCCHHHHHHHHHHHHHHhCCCEEEEcce
Q 025565 69 VDTLRTGLAMGADRGVHVEAAG---QLYPLTVAKILKSLVEVEKPGLIILGKQ 118 (251)
Q Consensus 69 ~~~l~~~la~GaD~vi~v~~~~---~~d~~a~a~~La~~ik~~~~dlIl~G~~ 118 (251)
.++.+.+-.+|++..+.++.+. .++......+|.+++.+.+|++|++-.-
T Consensus 66 ~E~~~a~~~LGv~~~~~l~~~~~~~~~~~~~~~~~L~~ii~~~~P~~V~t~~~ 118 (237)
T COG2120 66 AEARAAARVLGVRETIFLGFPDTGADADPEEITGALVAIIRRLRPDVVFTPYP 118 (237)
T ss_pred HHHHHHHHhcCCCcceecCCCccccccChHHHHHHHHHHHHHhCCCEEEecCC
Confidence 3445556678999988888652 4789999999999999999998887653
No 69
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=76.21 E-value=65 Score=29.73 Aligned_cols=132 Identities=16% Similarity=0.105 Sum_probs=73.1
Q ss_pred EEEEeeccCCCceEEecC--CCe-EEccCCccCCCHHhHHHHHHHHHhhhhCCCceEEEEe--eCC-----------c-h
Q 025565 5 VAIKRVVDYAVKIRVKSD--RTG-VETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVS--MGP-----------A-Q 67 (251)
Q Consensus 5 V~~K~Vpd~~~~~~~~~~--~~~-~~~~~~~~~in~~d~~Ale~A~~lae~~~g~~V~al~--~G~-----------~-~ 67 (251)
+.+++-||-+..+++..+ +.. +-......-.|..=.+.|-.+-.+++. .-.+|+++. +|- . .
T Consensus 36 ~~~~~FpdGE~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr~~-~a~~i~~ViPYl~YaRQDr~~~~~e~is 114 (332)
T PRK00553 36 IVIQKFADGETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKRG-SAKSITAILPYYGYARQDRKTAGREPIT 114 (332)
T ss_pred eEEEECCCCCEEEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHHHHc-CCCeEEEEeeccccchhhcccCCCCCcc
Confidence 457888998766666422 111 222222222243333344444445554 223576663 222 1 2
Q ss_pred hHHHHHHHHHCCCCEEEEEeeCC----C-C----CHHHHHHHHHHHHHHh-C-CCEEEEcceeecCCcCcHHHHHHHHcC
Q 025565 68 CVDTLRTGLAMGADRGVHVEAAG----Q-L----YPLTVAKILKSLVEVE-K-PGLIILGKQAIDDDCNQTGQMVAGLLS 136 (251)
Q Consensus 68 ~~~~l~~~la~GaD~vi~v~~~~----~-~----d~~a~a~~La~~ik~~-~-~dlIl~G~~s~d~~~~~v~~~lA~~Lg 136 (251)
+.-..+-+-.+|+|+++.++-.. + + +.......+++.+.+. + .+++++|- |..+-..+-.+|..||
T Consensus 115 ak~vA~ll~~~g~d~vit~DlH~~~i~~~F~ipv~~l~a~~~~~~~~~~~~~~~~~vvVsP---D~gg~~rA~~lA~~lg 191 (332)
T PRK00553 115 SKLVADLLTKAGVTRVTLTDIHSDQTQGFFDIPVDILRTYHVFLSRVLELLGKKDLVVVSP---DYGGVKRARLIAESLE 191 (332)
T ss_pred HHHHHHHHHhcCCCEEEEEeCChHHHHhhcCCCcceeechHHHHHHHHHhcCCCCeEEEEE---CCCcHHHHHHHHHHhC
Confidence 33334445567999999998321 1 1 2222345566666542 2 45777766 5577789999999999
Q ss_pred CCcc
Q 025565 137 WPQG 140 (251)
Q Consensus 137 ~p~v 140 (251)
.|+.
T Consensus 192 ~~~~ 195 (332)
T PRK00553 192 LPLA 195 (332)
T ss_pred CCEE
Confidence 9965
No 70
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=76.16 E-value=13 Score=30.89 Aligned_cols=81 Identities=10% Similarity=0.062 Sum_probs=54.6
Q ss_pred CHHhHHHHHHHHHhhhhCCCceEEEEeeCCch---------------hHHHHHHHHHCCCCEEEEEeeCC---CCCHHHH
Q 025565 36 NPFCEIALEEALRIKESGLASEVVAVSMGPAQ---------------CVDTLRTGLAMGADRGVHVEAAG---QLYPLTV 97 (251)
Q Consensus 36 n~~d~~Ale~A~~lae~~~g~~V~al~~G~~~---------------~~~~l~~~la~GaD~vi~v~~~~---~~d~~a~ 97 (251)
..=-...++.|.+++++ .+...+++++-+.. .++-++.+.++|+|.++.++-+. ..+++..
T Consensus 12 H~GH~~ll~~a~~~a~~-~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~vd~v~~~~f~~~~~~~s~~~F 90 (180)
T cd02064 12 HLGHQALIKTLKKIARE-RGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLGVDYLLVLPFDKEFASLSAEEF 90 (180)
T ss_pred CHHHHHHHHHHHHHHHH-cCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcCCCEEEEeCCCHHHHcCCHHHH
Confidence 44446779999999987 56677777766521 24456677789999999986432 2355544
Q ss_pred HHHHHHHHHHhCCCEEEEcceee
Q 025565 98 AKILKSLVEVEKPGLIILGKQAI 120 (251)
Q Consensus 98 a~~La~~ik~~~~dlIl~G~~s~ 120 (251)
.+ ..+.+.+++.|++|.-..
T Consensus 91 i~---~il~~~~~~~ivvG~Df~ 110 (180)
T cd02064 91 VE---DLLVKLNAKHVVVGFDFR 110 (180)
T ss_pred HH---HHHhhcCCeEEEEccCCC
Confidence 33 334444899999999654
No 71
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=74.75 E-value=20 Score=33.88 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccc
Q 025565 99 KILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTF 142 (251)
Q Consensus 99 ~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 142 (251)
.-+.+.+++.+||+|+.+. ..-.+|.++|+|++.-
T Consensus 360 ~e~~~~i~~~~pdliig~~---------~~~~~a~~~gip~~~~ 394 (430)
T cd01981 360 TEVGDMIARTEPELIFGTQ---------MERHIGKRLDIPCAVI 394 (430)
T ss_pred HHHHHHHHhhCCCEEEecc---------hhhHHHHHcCCCEEEE
Confidence 3466678888999999655 3344689999998643
No 72
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=74.30 E-value=53 Score=29.43 Aligned_cols=86 Identities=15% Similarity=0.072 Sum_probs=49.8
Q ss_pred HHHHhhhhCCCceEEEEee--C------CchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEc
Q 025565 45 EALRIKESGLASEVVAVSM--G------PAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILG 116 (251)
Q Consensus 45 ~A~~lae~~~g~~V~al~~--G------~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G 116 (251)
...+.+.. .|.+|.+-.. | ++...+.++.+..+|+|++.+.+.-...+|..+...+..+.+.. |++-|-=
T Consensus 119 ~~i~~a~~-~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~-~~~~i~~ 196 (280)
T cd07945 119 EVIEYAIK-NGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRY-PNLHFDF 196 (280)
T ss_pred HHHHHHHh-CCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhC-CCCeEEE
Confidence 33444444 4666554333 3 33345667889999999988876544678998888887776544 4443332
Q ss_pred ceeecCCcCcHHHHHHH
Q 025565 117 KQAIDDDCNQTGQMVAG 133 (251)
Q Consensus 117 ~~s~d~~~~~v~~~lA~ 133 (251)
+.-.| .+-.++-.+|+
T Consensus 197 H~Hnd-~Gla~AN~laA 212 (280)
T cd07945 197 HAHND-YDLAVANVLAA 212 (280)
T ss_pred EeCCC-CCHHHHHHHHH
Confidence 32223 33345544443
No 73
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=74.11 E-value=13 Score=28.56 Aligned_cols=83 Identities=19% Similarity=0.160 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEccee
Q 025565 40 EIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQA 119 (251)
Q Consensus 40 ~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s 119 (251)
+.|+...+.+++ .|.+.+++.--++......+. +|++|.+.......++.....|.+++++.+.|.+.-|...
T Consensus 12 eia~r~~ra~r~--~Gi~tv~v~s~~d~~s~~~~~-----ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~pGyg~ 84 (110)
T PF00289_consen 12 EIAVRIIRALRE--LGIETVAVNSNPDTVSTHVDM-----ADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHPGYGF 84 (110)
T ss_dssp HHHHHHHHHHHH--TTSEEEEEEEGGGTTGHHHHH-----SSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEESTSST
T ss_pred HHHHHHHHHHHH--hCCcceeccCchhcccccccc-----cccceecCcchhhhhhccHHHHhhHhhhhcCcccccccch
Confidence 347777777777 477888877766542222222 7999999843334555666788888999999999977754
Q ss_pred ecCCcCcHHHHHHHH
Q 025565 120 IDDDCNQTGQMVAGL 134 (251)
Q Consensus 120 ~d~~~~~v~~~lA~~ 134 (251)
. ...+.+|.+
T Consensus 85 l-----se~~~fa~~ 94 (110)
T PF00289_consen 85 L-----SENAEFAEA 94 (110)
T ss_dssp T-----TTHHHHHHH
T ss_pred h-----HHHHHHHHH
Confidence 3 356666654
No 74
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=74.11 E-value=49 Score=30.49 Aligned_cols=89 Identities=19% Similarity=0.228 Sum_probs=53.4
Q ss_pred HHHHHHhhhhCCCceEEEEee-CC----chhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 43 LEEALRIKESGLASEVVAVSM-GP----AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 43 le~A~~lae~~~g~~V~al~~-G~----~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
+....+.+.+ .|.+|.+-.+ .+ +...+.++.+.++|+|.+++.+.-....|+.+.+.+..+-++.+|++-+ |-
T Consensus 117 ~~~~i~~ak~-~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~i-g~ 194 (337)
T PRK08195 117 SEQHIGLARE-LGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQV-GF 194 (337)
T ss_pred HHHHHHHHHH-CCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeE-EE
Confidence 4444444544 4666655332 22 2234456778889999988887555678999998888887777667544 33
Q ss_pred eeecCCcCcHHHHHHH
Q 025565 118 QAIDDDCNQTGQMVAG 133 (251)
Q Consensus 118 ~s~d~~~~~v~~~lA~ 133 (251)
..=+..+-.++--+++
T Consensus 195 H~HnnlGla~ANslaA 210 (337)
T PRK08195 195 HGHNNLGLGVANSLAA 210 (337)
T ss_pred EeCCCcchHHHHHHHH
Confidence 3323333334444433
No 75
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=73.57 E-value=16 Score=32.10 Aligned_cols=32 Identities=28% Similarity=0.201 Sum_probs=17.6
Q ss_pred EEEEeeCCchhHHHHHHHHHCCCCEEEEEeeC
Q 025565 58 VVAVSMGPAQCVDTLRTGLAMGADRGVHVEAA 89 (251)
Q Consensus 58 V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~ 89 (251)
--+-.-|-+-.....+.+..-|+|++++..|+
T Consensus 21 PLadI~GkpmI~rV~e~a~~s~~~rvvVATDd 52 (247)
T COG1212 21 PLADIGGKPMIVRVAERALKSGADRVVVATDD 52 (247)
T ss_pred chhhhCCchHHHHHHHHHHHcCCCeEEEEcCC
Confidence 33334444444555666666666666666643
No 76
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=73.09 E-value=39 Score=33.09 Aligned_cols=32 Identities=25% Similarity=0.167 Sum_probs=23.9
Q ss_pred HHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 100 ILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 100 ~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
-|.+++++.+||+++.+. -+-.+|..+|+|++
T Consensus 428 ~l~~~l~~~~~DlliG~s---------~~k~~a~~~giPli 459 (515)
T TIGR01286 428 HLRSLVFTEPVDFLIGNS---------YGKYIQRDTLVPLI 459 (515)
T ss_pred HHHHHHhhcCCCEEEECc---------hHHHHHHHcCCCEE
Confidence 344566777899998443 45688999999986
No 77
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=72.94 E-value=26 Score=33.23 Aligned_cols=32 Identities=28% Similarity=0.265 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 100 ILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 100 ~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
-+.+.+++.+||+++.+. -.-.+|.++|+|++
T Consensus 360 e~~~~i~~~~pDliig~~---------~~~~~a~k~giP~~ 391 (421)
T cd01976 360 ELEEFVKRLKPDLIGSGI---------KEKYVFQKMGIPFR 391 (421)
T ss_pred HHHHHHHHhCCCEEEecC---------cchhhhhhcCCCeE
Confidence 455677888999999665 24568999999993
No 78
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=72.92 E-value=61 Score=29.16 Aligned_cols=90 Identities=14% Similarity=0.052 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhhhCCCceEEE---EeeCC--------chhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh
Q 025565 40 EIALEEALRIKESGLASEVVA---VSMGP--------AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE 108 (251)
Q Consensus 40 ~~Ale~A~~lae~~~g~~V~a---l~~G~--------~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~ 108 (251)
.+.++.+.+.+.+ .|.+|.+ .++|. +...+..+++.++|+|++.+.+.-....|..+.+.+..+.++.
T Consensus 119 l~~~~~~v~~ak~-~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~ 197 (287)
T PRK05692 119 LERFEPVAEAAKQ-AGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEF 197 (287)
T ss_pred HHHHHHHHHHHHH-cCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhC
Confidence 3345566666665 5666642 23453 2345677889999999888776444578999888888777665
Q ss_pred C-CCEEEEcceeecCCcCcHHHHHHH
Q 025565 109 K-PGLIILGKQAIDDDCNQTGQMVAG 133 (251)
Q Consensus 109 ~-~dlIl~G~~s~d~~~~~v~~~lA~ 133 (251)
+ ..+-+=++ +..|-.++-.+|+
T Consensus 198 ~~~~i~~H~H---n~~Gla~AN~laA 220 (287)
T PRK05692 198 PAERLAGHFH---DTYGQALANIYAS 220 (287)
T ss_pred CCCeEEEEec---CCCCcHHHHHHHH
Confidence 4 23444333 2233445555543
No 79
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=72.28 E-value=40 Score=33.65 Aligned_cols=99 Identities=18% Similarity=0.170 Sum_probs=57.9
Q ss_pred CCCHHhHHHHHHHHHhhhhCCCceE---EEEeeCCc----hhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHH
Q 025565 34 SMNPFCEIALEEALRIKESGLASEV---VAVSMGPA----QCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVE 106 (251)
Q Consensus 34 ~in~~d~~Ale~A~~lae~~~g~~V---~al~~G~~----~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik 106 (251)
.+|+.+ -++.+.+.+.+ .|..+ ++.+.+|. ...+.++++.++|+|.+.+.+.-....|+.+...+.++.+
T Consensus 119 ~lnd~~--~~~~ai~~ak~-~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~ 195 (593)
T PRK14040 119 AMNDPR--NLETALKAVRK-VGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKK 195 (593)
T ss_pred eCCcHH--HHHHHHHHHHH-cCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHH
Confidence 456554 35566666665 56554 23334552 2456788899999998877764446789888888877766
Q ss_pred HhCCCEEEEcceeecCCcCcHHHHHH-HHcCCC
Q 025565 107 VEKPGLIILGKQAIDDDCNQTGQMVA-GLLSWP 138 (251)
Q Consensus 107 ~~~~dlIl~G~~s~d~~~~~v~~~lA-~~Lg~p 138 (251)
..+..+=+=.+ +..|-.++-.+| ...|+-
T Consensus 196 ~~~~pi~~H~H---nt~GlA~An~laAieAGa~ 225 (593)
T PRK14040 196 RVDVPLHLHCH---ATTGLSTATLLKAIEAGID 225 (593)
T ss_pred hcCCeEEEEEC---CCCchHHHHHHHHHHcCCC
Confidence 55433323222 323344555554 334433
No 80
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=71.63 E-value=66 Score=28.27 Aligned_cols=89 Identities=19% Similarity=0.236 Sum_probs=51.7
Q ss_pred HHHHHHhhhhCCCceEEEEe--eC---CchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 43 LEEALRIKESGLASEVVAVS--MG---PAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 43 le~A~~lae~~~g~~V~al~--~G---~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
+..+.+.+.. .|.+|.+-. .+ ++...+.++.+.++|+|.+++.+.-....|..+.+.+..+-++.+. +-+|-
T Consensus 114 ~~~~i~~ak~-~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~--~~l~~ 190 (263)
T cd07943 114 SEQHIGAARK-LGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDP--TPVGF 190 (263)
T ss_pred HHHHHHHHHH-CCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCC--ceEEE
Confidence 4445555544 466654332 22 2234455788888999988776543457888888888777665543 33444
Q ss_pred eeecCCcCcHHHHHHHH
Q 025565 118 QAIDDDCNQTGQMVAGL 134 (251)
Q Consensus 118 ~s~d~~~~~v~~~lA~~ 134 (251)
..-+..+-.++--+|+.
T Consensus 191 H~Hn~~GlA~AN~laAi 207 (263)
T cd07943 191 HGHNNLGLAVANSLAAV 207 (263)
T ss_pred EecCCcchHHHHHHHHH
Confidence 44444444555555554
No 81
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=71.61 E-value=68 Score=29.53 Aligned_cols=89 Identities=21% Similarity=0.243 Sum_probs=53.1
Q ss_pred HHHHHHhhhhCCCceEEEEeeC-C----chhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 43 LEEALRIKESGLASEVVAVSMG-P----AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 43 le~A~~lae~~~g~~V~al~~G-~----~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
+....+.+.+ .|.+|.+-.+- . +...+.++.+.++|+|.+++.+.-....|..+...+..+-+..++++-+ |-
T Consensus 116 ~~~~i~~ak~-~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~i-g~ 193 (333)
T TIGR03217 116 SEQHIGMARE-LGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQV-GF 193 (333)
T ss_pred HHHHHHHHHH-cCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceE-EE
Confidence 3444444444 46676544332 2 2234566788899999998887555678999888888877766766332 33
Q ss_pred eeecCCcCcHHHHHHH
Q 025565 118 QAIDDDCNQTGQMVAG 133 (251)
Q Consensus 118 ~s~d~~~~~v~~~lA~ 133 (251)
..-+..+-.++--+++
T Consensus 194 H~HnnlGla~ANslaA 209 (333)
T TIGR03217 194 HAHHNLSLAVANSIAA 209 (333)
T ss_pred EeCCCCchHHHHHHHH
Confidence 3323333334444443
No 82
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=71.59 E-value=11 Score=31.55 Aligned_cols=72 Identities=24% Similarity=0.113 Sum_probs=45.9
Q ss_pred CHHHHHHH---HHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEEEecCCCeEEEEEEeCCeEEEEE
Q 025565 93 YPLTVAKI---LKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLE 169 (251)
Q Consensus 93 d~~a~a~~---La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~l~~~R~~~gG~~~~~ 169 (251)
++..+... +++..+..++|.|++-.+ .|=-+|..+|..||.|++.--..-.+. .+....+...+.|.++++
T Consensus 34 ~~~~~~~~i~~~~~~~~~~~id~Iv~iea----~Gi~~a~~vA~~Lgvp~v~vRK~~kl~--~~~~~~~~~~~~~~~~l~ 107 (179)
T COG0503 34 DPELLAKLIDELAERYKDDGIDKIVTIEA----RGIPLAAAVALELGVPFVPVRKKGKLP--EESVVETYYLEYGSETLE 107 (179)
T ss_pred CcHHHHHHHHHHHHHhcccCCCEEEEEcc----ccchhHHHHHHHhCCCEEEEEecCCCC--CcceeEEEEEeccceEEE
Confidence 44444444 445555557999998775 345799999999999998544433333 344555555566555555
Q ss_pred E
Q 025565 170 L 170 (251)
Q Consensus 170 ~ 170 (251)
+
T Consensus 108 ~ 108 (179)
T COG0503 108 L 108 (179)
T ss_pred E
Confidence 4
No 83
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=71.55 E-value=59 Score=28.81 Aligned_cols=75 Identities=15% Similarity=0.105 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhhhhCCCceEEEEe---eC--CchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEE
Q 025565 39 CEIALEEALRIKESGLASEVVAVS---MG--PAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLI 113 (251)
Q Consensus 39 d~~Ale~A~~lae~~~g~~V~al~---~G--~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlI 113 (251)
+.+.+..+.+.+.+ .|.+|.+-. .+ ++...+.++++.++|+|++++.+.-....|+.+...+..+-+..++++-
T Consensus 107 ~~~~~~~~i~~ak~-~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~ 185 (266)
T cd07944 107 EFDEALPLIKAIKE-KGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIK 185 (266)
T ss_pred cHHHHHHHHHHHHH-CCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCce
Confidence 34434444555544 466654321 11 1234556788889999998887654467899988888877666665444
Q ss_pred E
Q 025565 114 I 114 (251)
Q Consensus 114 l 114 (251)
+
T Consensus 186 i 186 (266)
T cd07944 186 L 186 (266)
T ss_pred E
Confidence 4
No 84
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=70.50 E-value=70 Score=27.57 Aligned_cols=68 Identities=22% Similarity=0.155 Sum_probs=43.4
Q ss_pred HHHHHHHHhhhhCCCceEEEEe--eCC-----chhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhC
Q 025565 41 IALEEALRIKESGLASEVVAVS--MGP-----AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEK 109 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~--~G~-----~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~ 109 (251)
..+..+.+.+.+ .|.++..-. +.. +...+.++.+.++|+|.+++.+.-....|+.+.+.+..+.+..+
T Consensus 115 ~~~~~~i~~a~~-~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 115 ENAEEAIEAAKE-AGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALP 189 (265)
T ss_pred HHHHHHHHHHHH-CCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCC
Confidence 334444444444 466655443 222 12456788899999999998765446788888888877766543
No 85
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=70.28 E-value=42 Score=31.82 Aligned_cols=32 Identities=13% Similarity=-0.015 Sum_probs=23.6
Q ss_pred HHHHHHHHhC----CCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 100 ILKSLVEVEK----PGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 100 ~La~~ik~~~----~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
-+.+.+++.+ ||+|+.++ ..-.+|.+||+|++
T Consensus 358 ~~~~~i~~~~~~~~~dliig~s---------~~~~~a~~~~ip~i 393 (427)
T cd01971 358 AIGQSLRQSDFKYKPPIIFGSS---------WERDLAKELGGKIL 393 (427)
T ss_pred HHHHHHHhCCCCCCCCEEEech---------HHHHHHHHcCCCeE
Confidence 4555566654 99998655 56778999999986
No 86
>PRK07904 short chain dehydrogenase; Provisional
Probab=69.63 E-value=47 Score=28.57 Aligned_cols=75 Identities=15% Similarity=0.082 Sum_probs=46.0
Q ss_pred HHHHHHHHhhhhCCCceEEEEeeCCch-hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 41 IALEEALRIKESGLASEVVAVSMGPAQ-CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~~G~~~-~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
-..+.|.+++++ .|.+|+++.-.++. .++..+++.+.|.+++..+..| -.|...+.+.+.++.+..+.|+++.+.
T Consensus 20 iG~~la~~l~~~-gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D-~~~~~~~~~~~~~~~~~g~id~li~~a 95 (253)
T PRK07904 20 IGLAICERYLKN-APARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFD-ALDTDSHPKVIDAAFAGGDVDVAIVAF 95 (253)
T ss_pred HHHHHHHHHHhc-CCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEec-CCChHHHHHHHHHHHhcCCCCEEEEee
Confidence 345677777775 34677776554443 4555666667776666666544 345566666666655434799887654
No 87
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=69.56 E-value=14 Score=34.20 Aligned_cols=13 Identities=15% Similarity=0.529 Sum_probs=7.7
Q ss_pred echHHHHHHHhhh
Q 025565 234 LSSVEELIDKLKN 246 (251)
Q Consensus 234 ~e~~~~l~~~L~~ 246 (251)
++.+.+.++.|++
T Consensus 314 l~~in~A~~~m~~ 326 (339)
T COG1064 314 LDEINEAYERMEK 326 (339)
T ss_pred HHHHHHHHHHHHc
Confidence 3456666666654
No 88
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=69.17 E-value=20 Score=29.12 Aligned_cols=78 Identities=23% Similarity=0.260 Sum_probs=48.2
Q ss_pred HHhHHHHHHHHHhhhhCCC-----ceE-EEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCC---CCHHHHHHHHHHHHHH
Q 025565 37 PFCEIALEEALRIKESGLA-----SEV-VAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQ---LYPLTVAKILKSLVEV 107 (251)
Q Consensus 37 ~~d~~Ale~A~~lae~~~g-----~~V-~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~---~d~~a~a~~La~~ik~ 107 (251)
|.-.+.-+.+.+|++. .+ ..| .+...|++..++.++++.+.|+++++++.--.. ..+..+-+.+.+++++
T Consensus 65 PL~~~t~~q~~~l~~~-L~~~~~~~~v~~amry~~P~i~~~l~~l~~~g~~~iivlPl~P~~S~~Tt~s~~~~~~~~~~~ 143 (159)
T cd03411 65 PLNEITRAQAEALEKA-LDERGIDVKVYLAMRYGPPSIEEALEELKADGVDRIVVLPLYPQYSASTTGSYLDEVERALKK 143 (159)
T ss_pred ccHHHHHHHHHHHHHH-HhccCCCcEEEehHhcCCCCHHHHHHHHHHcCCCEEEEEECCcccccccHHHHHHHHHHHHHh
Confidence 3333444555555544 22 122 356688888999999999999999999974332 3444555555566655
Q ss_pred h--CCCEEEE
Q 025565 108 E--KPGLIIL 115 (251)
Q Consensus 108 ~--~~dlIl~ 115 (251)
. .+++-++
T Consensus 144 ~~~~~~~~~i 153 (159)
T cd03411 144 LRPAPELRVI 153 (159)
T ss_pred cCCCCcEEEe
Confidence 4 2454443
No 89
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=68.97 E-value=50 Score=30.05 Aligned_cols=84 Identities=15% Similarity=0.096 Sum_probs=57.9
Q ss_pred CCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCch---------------hHHHHHHHHHCCCCEEEEEeeCC---CCCHH
Q 025565 34 SMNPFCEIALEEALRIKESGLASEVVAVSMGPAQ---------------CVDTLRTGLAMGADRGVHVEAAG---QLYPL 95 (251)
Q Consensus 34 ~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~---------------~~~~l~~~la~GaD~vi~v~~~~---~~d~~ 95 (251)
.++.=-...|+.|+++++. .+...+++++-+.. .++-+..+.++|+|.++.+.-+. ..+++
T Consensus 24 GvH~GHq~Ll~~a~~~a~~-~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~gVD~~~~~~F~~~~~~ls~e 102 (305)
T PRK05627 24 GVHRGHQALLARAREIARE-RGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAELGVDYVLVLPFDEEFAKLSAE 102 (305)
T ss_pred cCCHHHHHHHHHHHHHHHh-cCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHcCCCEEEEecCCHHHhcCCHH
Confidence 4566667889999999987 56677788876421 24445667789999999986432 34565
Q ss_pred HHHHHHHHHHHHhCCCEEEEcceee
Q 025565 96 TVAKILKSLVEVEKPGLIILGKQAI 120 (251)
Q Consensus 96 a~a~~La~~ik~~~~dlIl~G~~s~ 120 (251)
.+-+-+ ++++.+++.|++|.-..
T Consensus 103 ~Fi~~~--l~~~l~~~~iVvG~Df~ 125 (305)
T PRK05627 103 EFIEDL--LVKGLNAKHVVVGFDFR 125 (305)
T ss_pred HHHHHH--HHhccCCCEEEECCCCC
Confidence 444321 24557899999998654
No 90
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=68.95 E-value=32 Score=31.28 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=47.9
Q ss_pred CCceEEEEeeCCchhHHHHHHHH-HCCCCEEE--EEeeCCCCCHHHHH---HHHHHHHHHhCCCEEEEcceeecCCcCcH
Q 025565 54 LASEVVAVSMGPAQCVDTLRTGL-AMGADRGV--HVEAAGQLYPLTVA---KILKSLVEVEKPGLIILGKQAIDDDCNQT 127 (251)
Q Consensus 54 ~g~~V~al~~G~~~~~~~l~~~l-a~GaD~vi--~v~~~~~~d~~a~a---~~La~~ik~~~~dlIl~G~~s~d~~~~~v 127 (251)
.+-++..+.-|... +...+.. .+|.+.-+ .+..+.......++ ..+++.+++.+||+|++-+ |....-.
T Consensus 27 ~~~~~~~~~tg~h~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiv~~~g---d~~~~la 101 (365)
T TIGR00236 27 PEIDSYVIVTAQHR--EMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEEKPDIVLVQG---DTTTTLA 101 (365)
T ss_pred CCCCEEEEEeCCCH--HHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeC---CchHHHH
Confidence 34566777777642 3444433 25654323 33322122233333 4466677888999999875 3343445
Q ss_pred HHHHHHHcCCCcc
Q 025565 128 GQMVAGLLSWPQG 140 (251)
Q Consensus 128 ~~~lA~~Lg~p~v 140 (251)
+...|.++|+|++
T Consensus 102 ~a~aa~~~~ipv~ 114 (365)
T TIGR00236 102 GALAAFYLQIPVG 114 (365)
T ss_pred HHHHHHHhCCCEE
Confidence 7888899999976
No 91
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=68.91 E-value=73 Score=30.47 Aligned_cols=79 Identities=18% Similarity=0.105 Sum_probs=47.0
Q ss_pred CCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCC-CHH---------------HHHHHHHHHHHHhCCCEEEEcc
Q 025565 54 LASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQL-YPL---------------TVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 54 ~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~-d~~---------------a~a~~La~~ik~~~~dlIl~G~ 117 (251)
..++-+++..|+...-...+-+..+|.+-+......... |.. .-..-+.+.+++.+||+++.+.
T Consensus 324 L~Gkrv~i~~g~~~~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~~~~~~~v~~~~d~~e~~~~i~~~~pDl~ig~~ 403 (456)
T TIGR01283 324 LKGKKAAIYTGGVKSWSLVSALQDLGMEVVATGTQKGTEEDYARIRELMGEGTVMLDDANPRELLKLLLEYKADLLIAGG 403 (456)
T ss_pred cCCCEEEEEcCCchHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHcCCCeEEEeCCCHHHHHHHHhhcCCCEEEEcc
Confidence 344555666776555556666777888754443211100 000 0113466677888999999553
Q ss_pred eeecCCcCcHHHHHHHHcCCCccc
Q 025565 118 QAIDDDCNQTGQMVAGLLSWPQGT 141 (251)
Q Consensus 118 ~s~d~~~~~v~~~lA~~Lg~p~vt 141 (251)
-.-.+|.++|+|++.
T Consensus 404 ---------~~~~~a~k~giP~i~ 418 (456)
T TIGR01283 404 ---------KERYTALKLGIPFCD 418 (456)
T ss_pred ---------chHHHHHhcCCCEEE
Confidence 446788899999863
No 92
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=68.77 E-value=66 Score=30.98 Aligned_cols=100 Identities=16% Similarity=0.148 Sum_probs=58.1
Q ss_pred CCCHHhHHHHHHHHHhhhhCCCceEE---EEeeCC----chhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHH
Q 025565 34 SMNPFCEIALEEALRIKESGLASEVV---AVSMGP----AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVE 106 (251)
Q Consensus 34 ~in~~d~~Ale~A~~lae~~~g~~V~---al~~G~----~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik 106 (251)
.+|+.+ -++.+.+.+.+ .|..+. +.+.+| +...+.++++.++|+|++.+.+.-....|..+...+.++-+
T Consensus 118 ~lnd~~--n~~~~v~~ak~-~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~ 194 (448)
T PRK12331 118 ALNDVR--NLETAVKATKK-AGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKE 194 (448)
T ss_pred ecCcHH--HHHHHHHHHHH-cCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 345443 35566777766 566553 344454 22356788899999998777654445788888887776655
Q ss_pred HhCCCEEEEcceeecCCcCcHHHHHHH-HcCCCc
Q 025565 107 VEKPGLIILGKQAIDDDCNQTGQMVAG-LLSWPQ 139 (251)
Q Consensus 107 ~~~~dlIl~G~~s~d~~~~~v~~~lA~-~Lg~p~ 139 (251)
..+ +-| +-.+-+..|-.++-.+|+ ..|+-.
T Consensus 195 ~~~--~pi-~~H~Hnt~GlA~AN~laAieaGad~ 225 (448)
T PRK12331 195 AVT--VPL-EVHTHATSGIAEMTYLKAIEAGADI 225 (448)
T ss_pred hcC--CeE-EEEecCCCCcHHHHHHHHHHcCCCE
Confidence 544 333 222223344446655544 445443
No 93
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=68.69 E-value=36 Score=29.70 Aligned_cols=107 Identities=12% Similarity=0.072 Sum_probs=63.1
Q ss_pred cCCCHHhHHHHHHHHHhhhh--------------CCCceEEEEeeCCchhHHHHHHHH-HCCCCEEEE-E-eeCC---C-
Q 025565 33 MSMNPFCEIALEEALRIKES--------------GLASEVVAVSMGPAQCVDTLRTGL-AMGADRGVH-V-EAAG---Q- 91 (251)
Q Consensus 33 ~~in~~d~~Ale~A~~lae~--------------~~g~~V~al~~G~~~~~~~l~~~l-a~GaD~vi~-v-~~~~---~- 91 (251)
++|..||--.|..+++.... ..|-++.+++--+.. ...+++.+ .||..+-+. + +.|. .
T Consensus 73 iiIaCf~DPgl~~~Re~~~~PviGi~eAsv~~A~~vgrrfsViTtt~rs-~~il~~lv~~~g~s~~~~~vrstdl~vL~l 151 (230)
T COG4126 73 IIIACFSDPGLAAARERAAIPVIGICEASVLAALFVGRRFSVITTTERS-RPILEELVRSYGLSRHCRSVRSTDLPVLAL 151 (230)
T ss_pred EEEEecCChHHHHHHHHhCCCceehhHHHHHHHHHhcceEEEEecCccc-HHHHHHHHHhcCccccccceeeCCCCcccc
Confidence 45556666666666555422 134566666666643 55565544 577654443 2 2221 1
Q ss_pred CC-HH----HHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCccccee
Q 025565 92 LY-PL----TVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFAS 144 (251)
Q Consensus 92 ~d-~~----a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~ 144 (251)
.+ ++ ......++.+++.+.|.|++|..-.. .+..+|....|+|.+-.|.
T Consensus 152 ~~~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms----~la~~Lq~~~gvPVIDgv~ 205 (230)
T COG4126 152 EGPPEEAEALLVIEAAEALKEDGAEAIILGCAGMS----DLADQLQKAFGVPVIDGVA 205 (230)
T ss_pred cCChHHHHHHHHHHHHHHhhhcCCCEEEEcCccHH----HHHHHHHHHhCCCcccchH
Confidence 11 22 22233445566679999999997543 4899999999999986553
No 94
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=68.68 E-value=44 Score=31.39 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=43.3
Q ss_pred CceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCC--------------------CCCHHHHHHHHHHHHHHhCCCEEE
Q 025565 55 ASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG--------------------QLYPLTVAKILKSLVEVEKPGLII 114 (251)
Q Consensus 55 g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~--------------------~~d~~a~a~~La~~ik~~~~dlIl 114 (251)
+++-+++..++...-...+-+..+|..-+....... ..|. ..+.+.+++.+||+++
T Consensus 286 ~gkrv~i~~~~~~~~~la~~l~elGm~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~e~~~~i~~~~pDl~i 361 (410)
T cd01968 286 EGKKAALYTGGVKSWSLVSALQDLGMEVVATGTQKGTKEDYERIKELLGEGTVIVDDANP----RELKKLLKEKKADLLV 361 (410)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHCCCEEEEEecccCCHHHHHHHHHHhCCCcEEEeCCCH----HHHHHHHhhcCCCEEE
Confidence 334445555554445555666677877444432110 1122 2455667777999988
Q ss_pred EcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 115 LGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 115 ~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
.+. -.-.+|.++|+|++
T Consensus 362 g~s---------~~~~~a~~~gip~~ 378 (410)
T cd01968 362 AGG---------KERYLALKLGIPFC 378 (410)
T ss_pred ECC---------cchhhHHhcCCCEE
Confidence 664 33578999999987
No 95
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=68.17 E-value=66 Score=26.41 Aligned_cols=102 Identities=12% Similarity=0.023 Sum_probs=56.6
Q ss_pred CccCCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCch--hHHHHHHHHHC--CCCEEEEEeeCCCCCHHHHHHHHHHHHH
Q 025565 31 VKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQ--CVDTLRTGLAM--GADRGVHVEAAGQLYPLTVAKILKSLVE 106 (251)
Q Consensus 31 ~~~~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~--~~~~l~~~la~--GaD~vi~v~~~~~~d~~a~a~~La~~ik 106 (251)
.+..++..|+ +..-++.+++ .+.+|. .+|... .+.+.+.+-.. |.+ ++... +..+...... .+.+.|+
T Consensus 25 ~~~r~~g~dl--~~~ll~~~~~-~~~~v~--llG~~~~~~~~~~~~l~~~yp~l~-i~g~~-~g~~~~~~~~-~i~~~I~ 96 (171)
T cd06533 25 LPERVTGSDL--MPALLELAAQ-KGLRVF--LLGAKPEVLEKAAERLRARYPGLK-IVGYH-HGYFGPEEEE-EIIERIN 96 (171)
T ss_pred CCcccCcHHH--HHHHHHHHHH-cCCeEE--EECCCHHHHHHHHHHHHHHCCCcE-EEEec-CCCCChhhHH-HHHHHHH
Confidence 3456777776 5555566655 355665 445532 22222223332 233 22222 2223332222 2778888
Q ss_pred HhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccc
Q 025565 107 VEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTF 142 (251)
Q Consensus 107 ~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 142 (251)
+.+||+|++|-.+--.+ .+..+...+++.+++-.
T Consensus 97 ~~~pdiv~vglG~PkQE--~~~~~~~~~l~~~v~~~ 130 (171)
T cd06533 97 ASGADILFVGLGAPKQE--LWIARHKDRLPVPVAIG 130 (171)
T ss_pred HcCCCEEEEECCCCHHH--HHHHHHHHHCCCCEEEE
Confidence 88999999999764433 67888888887665433
No 96
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=67.15 E-value=92 Score=27.73 Aligned_cols=65 Identities=17% Similarity=0.250 Sum_probs=42.2
Q ss_pred HHHHHHhhhhCCCceEEE---EeeCC--------chhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh
Q 025565 43 LEEALRIKESGLASEVVA---VSMGP--------AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE 108 (251)
Q Consensus 43 le~A~~lae~~~g~~V~a---l~~G~--------~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~ 108 (251)
+..+.+.+.. .|.+|.+ -++|. +...+.++.+.++|+|++++.+.-....|..+.+.+..+.++.
T Consensus 116 ~~~~v~~ak~-~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 191 (274)
T cd07938 116 FEPVAELAKA-AGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERF 191 (274)
T ss_pred HHHHHHHHHH-CCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHC
Confidence 3344445554 5666642 13442 1234567888999999988876544678999888888776654
No 97
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=66.63 E-value=27 Score=28.73 Aligned_cols=86 Identities=17% Similarity=0.142 Sum_probs=45.3
Q ss_pred CCHHhHHHHHHHHHhhhhCCCceEEEEeeCCchh-HHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEE
Q 025565 35 MNPFCEIALEEALRIKESGLASEVVAVSMGPAQC-VDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLI 113 (251)
Q Consensus 35 in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~-~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlI 113 (251)
++.+|. | .|++-+.. .+.++..+....... ...+.+.+ |.+=.+..- .+.+..-..+-++ +..++|+|
T Consensus 61 ~s~~Di--l-~al~~a~~-~~~~Iavv~~~~~~~~~~~~~~ll--~~~i~~~~~----~~~~e~~~~i~~~-~~~G~~vi 129 (176)
T PF06506_consen 61 ISGFDI--L-RALAKAKK-YGPKIAVVGYPNIIPGLESIEELL--GVDIKIYPY----DSEEEIEAAIKQA-KAEGVDVI 129 (176)
T ss_dssp --HHHH--H-HHHHHCCC-CTSEEEEEEESS-SCCHHHHHHHH--T-EEEEEEE----SSHHHHHHHHHHH-HHTT--EE
T ss_pred CCHhHH--H-HHHHHHHh-cCCcEEEEecccccHHHHHHHHHh--CCceEEEEE----CCHHHHHHHHHHH-HHcCCcEE
Confidence 445553 3 33333333 466777777765421 34455555 443222222 1344444555444 34589999
Q ss_pred EEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 114 ILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 114 l~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
+.|. +..++|.++|.|++
T Consensus 130 VGg~---------~~~~~A~~~gl~~v 147 (176)
T PF06506_consen 130 VGGG---------VVCRLARKLGLPGV 147 (176)
T ss_dssp EESH---------HHHHHHHHTTSEEE
T ss_pred ECCH---------HHHHHHHHcCCcEE
Confidence 9776 67899999999975
No 98
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=66.44 E-value=74 Score=30.06 Aligned_cols=77 Identities=25% Similarity=0.204 Sum_probs=45.5
Q ss_pred CceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCC-CCCHHH------------------HHHHHHHHHHHhCCCEEEE
Q 025565 55 ASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG-QLYPLT------------------VAKILKSLVEVEKPGLIIL 115 (251)
Q Consensus 55 g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~-~~d~~a------------------~a~~La~~ik~~~~dlIl~ 115 (251)
+++=+++..++..+-...+-+..+|..-+..+.... ..+... -..-+.+.+++.+||+|+.
T Consensus 298 ~gk~v~i~~~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~el~~~i~~~~pdliig 377 (428)
T cd01965 298 GGKRVAIAGDPDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVVFVGDLWDLESLAKEEPVDLLIG 377 (428)
T ss_pred cCCEEEEEcChHHHHHHHHHHHHcCCcceEEEEcCCCchhHHHHHHhhhhcCCCceEEECCCHHHHHHHhhccCCCEEEE
Confidence 333345555554444455666778887665544211 110000 1134556777789999997
Q ss_pred cceeecCCcCcHHHHHHHHcCCCcc
Q 025565 116 GKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 116 G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
+. ..-.+|.++|+|++
T Consensus 378 ~~---------~~~~~a~~~~ip~i 393 (428)
T cd01965 378 NS---------HGRYLARDLGIPLV 393 (428)
T ss_pred Cc---------hhHHHHHhcCCCEE
Confidence 65 44688999999996
No 99
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=66.03 E-value=26 Score=29.48 Aligned_cols=64 Identities=19% Similarity=0.264 Sum_probs=42.6
Q ss_pred HHHHHH-HCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCC-CEEEEcceeecCCcCcHHHHHHHHcCCCc
Q 025565 71 TLRTGL-AMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKP-GLIILGKQAIDDDCNQTGQMVAGLLSWPQ 139 (251)
Q Consensus 71 ~l~~~l-a~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~-dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~ 139 (251)
.+++.+ ..|.+--+... +...++......+-+.+++..+ .++|+|++- ||-.+.+||++.+.|.
T Consensus 19 ~l~~~~~~~~~~~~~~~p-~l~~~p~~a~~~l~~~i~~~~~~~~~liGSSl----GG~~A~~La~~~~~~a 84 (187)
T PF05728_consen 19 ALKQYFAEHGPDIQYPCP-DLPPFPEEAIAQLEQLIEELKPENVVLIGSSL----GGFYATYLAERYGLPA 84 (187)
T ss_pred HHHHHHHHhCCCceEECC-CCCcCHHHHHHHHHHHHHhCCCCCeEEEEECh----HHHHHHHHHHHhCCCE
Confidence 445533 45655444432 2245677777778888888754 488998853 3568999999999886
No 100
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=65.90 E-value=72 Score=30.82 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=24.7
Q ss_pred HHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 100 ILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 100 ~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
-+.+.+++.+||++|.+. -.-.+|.++|+|++
T Consensus 384 e~~~~i~~~~pDliig~s---------~~~~~a~k~giP~~ 415 (475)
T PRK14478 384 ELYKMLKEAKADIMLSGG---------RSQFIALKAGMPWL 415 (475)
T ss_pred HHHHHHhhcCCCEEEecC---------chhhhhhhcCCCEE
Confidence 345567778999999763 44578999999987
No 101
>PRK11890 phosphate acetyltransferase; Provisional
Probab=65.66 E-value=45 Score=30.56 Aligned_cols=78 Identities=18% Similarity=0.188 Sum_probs=53.8
Q ss_pred CCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCC----EEEEEeeCCCCCHHHHHHHHHHHHHHhC
Q 025565 34 SMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGAD----RGVHVEAAGQLYPLTVAKILKSLVEVEK 109 (251)
Q Consensus 34 ~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD----~vi~v~~~~~~d~~a~a~~La~~ik~~~ 109 (251)
+..+.|...|+++.+..+. | =+..+.+|++. ..-+.+-.+|.| +++... ++..+++.-...++..+
T Consensus 27 va~a~D~~vl~Aa~~a~~~--g-l~~piLvG~~~--~I~~~a~~~g~dl~~~eII~~~-----~~~~~a~~av~mV~~G~ 96 (312)
T PRK11890 27 VAHPCDESSLRGAVEAAQL--G-LITPILVGPRA--RIEAVAAECGLDLSGYEIVDAP-----HSHAAAAKAVELVREGE 96 (312)
T ss_pred EECCCCHHHHHHHHHHHHc--C-CEEEEEECCHH--HHHHHHHHcCCCcCCCEEECCC-----ChHHHHHHHHHHHHcCC
Confidence 4678899999999998886 3 35677889863 334445667876 333322 33445565567788889
Q ss_pred CCEEEEcceeec
Q 025565 110 PGLIILGKQAID 121 (251)
Q Consensus 110 ~dlIl~G~~s~d 121 (251)
.|.++.|...++
T Consensus 97 AD~lmkG~i~Tt 108 (312)
T PRK11890 97 AEALMKGSLHTD 108 (312)
T ss_pred CCEEecCCcccH
Confidence 999999997533
No 102
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=65.42 E-value=44 Score=31.85 Aligned_cols=73 Identities=22% Similarity=0.170 Sum_probs=47.8
Q ss_pred CceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCC-------------CCCHHHHHHHHHHHHHHhCCCEEEEcceeec
Q 025565 55 ASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG-------------QLYPLTVAKILKSLVEVEKPGLIILGKQAID 121 (251)
Q Consensus 55 g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~-------------~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d 121 (251)
+++=+++..++..+-...+-+..+|..-+..+..+. ..|. .-+.+.+++.++|+|+.+.
T Consensus 310 ~Gkrvai~~~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~~~~~~~~~D~----~~l~~~i~~~~~dliig~s---- 381 (432)
T TIGR01285 310 GGKKVAIAAEPDLLAAWATFFTSMGAQIVAAVTTTGSPLLQKLPVETVVIGDL----EDLEDLACAAGADLLITNS---- 381 (432)
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhCCcCcEEeCCH----HHHHHHHhhcCCCEEEECc----
Confidence 334346666665555566667778887666655321 1133 3556678888999999554
Q ss_pred CCcCcHHHHHHHHcCCCcc
Q 025565 122 DDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 122 ~~~~~v~~~lA~~Lg~p~v 140 (251)
-+-.+|.+||+|++
T Consensus 382 -----~~k~~A~~l~ip~i 395 (432)
T TIGR01285 382 -----HGRALAQRLALPLV 395 (432)
T ss_pred -----chHHHHHHcCCCEE
Confidence 45679999999986
No 103
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=65.27 E-value=77 Score=26.12 Aligned_cols=67 Identities=16% Similarity=0.060 Sum_probs=43.3
Q ss_pred HHHHHCCCCEEE--EEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceee
Q 025565 73 RTGLAMGADRGV--HVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASK 145 (251)
Q Consensus 73 ~~~la~GaD~vi--~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 145 (251)
+.+..+|.+-.. ++.| |...+.++|.++.+ .+|+|++...+.-+..-.+...++..+|.++.-+-..
T Consensus 26 ~~L~~~G~~v~~~~~v~D----d~~~I~~~l~~~~~--~~dlVIttGG~G~t~~D~t~ea~~~~~~~~l~~~~e~ 94 (170)
T cd00885 26 KELAELGIEVYRVTVVGD----DEDRIAEALRRASE--RADLVITTGGLGPTHDDLTREAVAKAFGRPLVLDEEA 94 (170)
T ss_pred HHHHHCCCEEEEEEEeCC----CHHHHHHHHHHHHh--CCCEEEECCCCCCCCCChHHHHHHHHhCCCcccCHHH
Confidence 335567876433 3332 56677788887775 6897776554434444567888888899998755443
No 104
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=64.95 E-value=1e+02 Score=27.39 Aligned_cols=89 Identities=20% Similarity=0.199 Sum_probs=53.0
Q ss_pred HHHHHHHHhhhhCCCceEEE-Eee--CC----chhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEE
Q 025565 41 IALEEALRIKESGLASEVVA-VSM--GP----AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLI 113 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~a-l~~--G~----~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlI 113 (251)
..+..+.+.+.+ .|.+|.. +.+ ++ +...+.++++.++|+|++++.+.-....|..+.+.+..+-+..+..+
T Consensus 118 ~~~~~~i~~ak~-~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l- 195 (275)
T cd07937 118 RNLEVAIKAVKK-AGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVGLPI- 195 (275)
T ss_pred HHHHHHHHHHHH-CCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCCCeE-
Confidence 345555555554 4666543 433 22 12355678889999999888765446789988888887776655333
Q ss_pred EEcceeecCCcCcHHHHHHH
Q 025565 114 ILGKQAIDDDCNQTGQMVAG 133 (251)
Q Consensus 114 l~G~~s~d~~~~~v~~~lA~ 133 (251)
|-..-+..+-.++-.+++
T Consensus 196 --~~H~Hnd~GlA~aN~laA 213 (275)
T cd07937 196 --HLHTHDTSGLAVATYLAA 213 (275)
T ss_pred --EEEecCCCChHHHHHHHH
Confidence 333323333445555544
No 105
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=64.79 E-value=63 Score=28.21 Aligned_cols=90 Identities=16% Similarity=-0.003 Sum_probs=51.8
Q ss_pred HhHHHHHHHHHhhhhCCCceEEEEeeC--CchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEE
Q 025565 38 FCEIALEEALRIKESGLASEVVAVSMG--PAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLII 114 (251)
Q Consensus 38 ~d~~Ale~A~~lae~~~g~~V~al~~G--~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl 114 (251)
|...+.+-..+++++ .|.++.-+--. +...++.++.+.+.|+|=++... ..+..++.++++++ +-..++
T Consensus 15 ~n~~~~~G~~~~~~~-~gv~~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~~g-------~~~~~~~~~vA~~~p~~~F~~ 86 (258)
T cd06353 15 WNYAHDEGRKAAEKA-LGVEVTYVENVPEGADAERVLRELAAQGYDLIFGTS-------FGFMDAALKVAKEYPDVKFEH 86 (258)
T ss_pred hhHHHHHHHHHHHHh-cCCeEEEEecCCchHhHHHHHHHHHHcCCCEEEECc-------hhhhHHHHHHHHHCCCCEEEE
Confidence 343444455555665 67776655444 23456788999999999777732 35556777777765 233444
Q ss_pred Ecceee----------cCCcCcHHHHHHHHc
Q 025565 115 LGKQAI----------DDDCNQTGQMVAGLL 135 (251)
Q Consensus 115 ~G~~s~----------d~~~~~v~~~lA~~L 135 (251)
+..... ...++.+++.+|.++
T Consensus 87 ~d~~~~~~Nv~~~~~~~~e~~ylaG~~Aa~~ 117 (258)
T cd06353 87 CSGYKTAPNVGSYFARIYEGRYLAGVVAGKM 117 (258)
T ss_pred CCCCCCCCCeeeEechhhHHHHHHHHHHHHh
Confidence 433221 123345666666654
No 106
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=64.69 E-value=84 Score=30.49 Aligned_cols=95 Identities=17% Similarity=0.145 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhhhCCCceEE-EE--eeCC----chhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCE
Q 025565 40 EIALEEALRIKESGLASEVV-AV--SMGP----AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGL 112 (251)
Q Consensus 40 ~~Ale~A~~lae~~~g~~V~-al--~~G~----~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dl 112 (251)
..-+..+.+.+.+ .|..|. ++ +++| +...+.++++.++|+|++.+.+.-....|..+...+.++-++.+-.+
T Consensus 121 ~~n~~~~i~~ak~-~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI 199 (467)
T PRK14041 121 IRNLEKSIEVAKK-HGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFGVPV 199 (467)
T ss_pred HHHHHHHHHHHHH-CCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcCCce
Confidence 3446667777766 566665 22 3454 22455678899999998777654445788888777776655544223
Q ss_pred EEEcceeecCCcCcHHHHHHH-HcCCC
Q 025565 113 IILGKQAIDDDCNQTGQMVAG-LLSWP 138 (251)
Q Consensus 113 Il~G~~s~d~~~~~v~~~lA~-~Lg~p 138 (251)
+-.+-+..|-.++-.+|+ ..|+-
T Consensus 200 ---~~H~Hnt~GlA~AN~laAieaGad 223 (467)
T PRK14041 200 ---EVHSHCTTGLASLAYLAAVEAGAD 223 (467)
T ss_pred ---EEEecCCCCcHHHHHHHHHHhCCC
Confidence 333333344456655544 44443
No 107
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=63.61 E-value=25 Score=32.51 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=50.2
Q ss_pred CCceEEEEeeCCchhHH---HHHHHHHCCCC--EEE--EEeeCC-CCCHHHHHHH---HHHHHHHhCCCEEEEcceeecC
Q 025565 54 LASEVVAVSMGPAQCVD---TLRTGLAMGAD--RGV--HVEAAG-QLYPLTVAKI---LKSLVEVEKPGLIILGKQAIDD 122 (251)
Q Consensus 54 ~g~~V~al~~G~~~~~~---~l~~~la~GaD--~vi--~v~~~~-~~d~~a~a~~---La~~ik~~~~dlIl~G~~s~d~ 122 (251)
.+.++..+.-|..-..+ .+......|.+ .-+ .+..+. ..-...++.. +.+++++.+||+||+-+ |+
T Consensus 27 ~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pd~vlv~G---D~ 103 (365)
T TIGR03568 27 PDLELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAGMAKSMGLTIIGFSDAFERLKPDLVVVLG---DR 103 (365)
T ss_pred CCCcEEEEEeCCCCChhhccHHHHHHHcCCCCCCccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeC---Cc
Confidence 45678888888653222 35666655542 222 233221 1224444444 44566778999988766 33
Q ss_pred CcCcHHHHHHHHcCCCcc
Q 025565 123 DCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 123 ~~~~v~~~lA~~Lg~p~v 140 (251)
.+.--++..|.+|++|++
T Consensus 104 ~~~la~alaA~~~~IPv~ 121 (365)
T TIGR03568 104 FEMLAAAIAAALLNIPIA 121 (365)
T ss_pred hHHHHHHHHHHHhCCcEE
Confidence 444567899999999987
No 108
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=62.82 E-value=49 Score=29.80 Aligned_cols=92 Identities=17% Similarity=0.128 Sum_probs=52.2
Q ss_pred HHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCC--CCC----------HHHHHHHHHHHHHHh
Q 025565 41 IALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG--QLY----------PLTVAKILKSLVEVE 108 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~--~~d----------~~a~a~~La~~ik~~ 108 (251)
.+++.|..|.++ |.+|++++.+.....+.++ ..|++ ++.+.... ... .......+.+.+++.
T Consensus 17 ~~~~la~~L~~~--g~ev~vv~~~~~~~~~~~~---~~g~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ik~~ 90 (357)
T PRK00726 17 PALALAEELKKR--GWEVLYLGTARGMEARLVP---KAGIE-FHFIPSGGLRRKGSLANLKAPFKLLKGVLQARKILKRF 90 (357)
T ss_pred HHHHHHHHHHhC--CCEEEEEECCCchhhhccc---cCCCc-EEEEeccCcCCCChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788888875 6789888775421111111 15765 45554221 111 133344556678888
Q ss_pred CCCEEEEcceeecCCcCcHHHHHHHHcCCCcccc
Q 025565 109 KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTF 142 (251)
Q Consensus 109 ~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 142 (251)
+||+|++-... ..-.+...+...+.|++..
T Consensus 91 ~pDvv~~~~~~----~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 91 KPDVVVGFGGY----VSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred CCCEEEECCCc----chhHHHHHHHHcCCCEEEE
Confidence 99999987522 1223344456677888743
No 109
>PRK01215 competence damage-inducible protein A; Provisional
Probab=62.24 E-value=1.1e+02 Score=27.28 Aligned_cols=82 Identities=7% Similarity=-0.029 Sum_probs=49.1
Q ss_pred eEEEEeeCCc-------hh-HHHH-HHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcH
Q 025565 57 EVVAVSMGPA-------QC-VDTL-RTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQT 127 (251)
Q Consensus 57 ~V~al~~G~~-------~~-~~~l-~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v 127 (251)
++..++.|.+ +. ...+ +.+..+|++-.....- .-|.+.+.++|.++.+ .+|+|++.....-+..--+
T Consensus 5 ~v~Ii~~GdEll~G~i~dtn~~~l~~~L~~~G~~v~~~~~v--~Dd~~~I~~~l~~a~~--~~DlVIttGG~g~t~dD~t 80 (264)
T PRK01215 5 FAWIITIGNELLIGRTVNTNASWIARRLTYLGYTVRRITVV--MDDIEEIVSAFREAID--RADVVVSTGGLGPTYDDKT 80 (264)
T ss_pred EEEEEEEChhccCCeEEEhhHHHHHHHHHHCCCeEEEEEEe--CCCHHHHHHHHHHHhc--CCCEEEEeCCCcCChhhhH
Confidence 4556666664 11 2234 4466789875443321 1256777888888766 4687776554433333456
Q ss_pred HHHHHHHcCCCcccc
Q 025565 128 GQMVAGLLSWPQGTF 142 (251)
Q Consensus 128 ~~~lA~~Lg~p~vt~ 142 (251)
.--+|..+|.++.-+
T Consensus 81 ~eaia~~~g~~l~~~ 95 (264)
T PRK01215 81 NEGFAKALGVELELN 95 (264)
T ss_pred HHHHHHHhCCCCCCC
Confidence 666777779888776
No 110
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=61.81 E-value=67 Score=31.94 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=54.6
Q ss_pred eEEEEeeCCch----hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHH
Q 025565 57 EVVAVSMGPAQ----CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVA 132 (251)
Q Consensus 57 ~V~al~~G~~~----~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA 132 (251)
.-+++.||+.+ ++++.+.+-.+|.+--+.|.. .+..+..+.+.+.+ .++.+.++|+++. |..+.+|+.+|
T Consensus 411 ~~v~i~~gs~sd~~~~~~~~~~l~~~g~~~~~~v~s-ahr~~~~~~~~~~~-~~~~~~~v~i~~a----g~~~~l~~~~a 484 (577)
T PLN02948 411 PLVGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIVS-AHRTPERMFSYARS-AHSRGLQVIIAGA----GGAAHLPGMVA 484 (577)
T ss_pred CeEEEEECchhhHHHHHHHHHHHHHcCCCeEEEEEC-CccCHHHHHHHHHH-HHHCCCCEEEEEc----CccccchHHHh
Confidence 34778888865 445566677899987777763 24455554443333 3445789999888 34578999999
Q ss_pred HHcCCCcc
Q 025565 133 GLLSWPQG 140 (251)
Q Consensus 133 ~~Lg~p~v 140 (251)
..-..|++
T Consensus 485 ~~t~~pvi 492 (577)
T PLN02948 485 SMTPLPVI 492 (577)
T ss_pred hccCCCEE
Confidence 99999976
No 111
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=61.72 E-value=79 Score=27.11 Aligned_cols=72 Identities=18% Similarity=0.029 Sum_probs=42.1
Q ss_pred HHHHHHHHHCCCCEEEEEeeCC--CCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccce
Q 025565 69 VDTLRTGLAMGADRGVHVEAAG--QLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFA 143 (251)
Q Consensus 69 ~~~l~~~la~GaD~vi~v~~~~--~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 143 (251)
+.+-+.|-++|..- +.++-+. ....+.+..+|.++.++ +++.|++|.-.++.. ..-.-+++..+|+++++-.
T Consensus 46 ~~~~~~A~~lgip~-~~i~~~~~~~~~~~~l~~~l~~~~~~-g~~~vv~G~i~sd~~-~~~~e~v~~~~gl~~~~PL 119 (218)
T TIGR03679 46 ELTRLQAEALGIPL-VKIETSGEKEKEVEDLKGALKELKRE-GVEGIVTGAIASRYQ-KSRIERICEELGLKVFAPL 119 (218)
T ss_pred HHHHHHHHHhCCCE-EEEECCCCChHHHHHHHHHHHHHHHc-CCCEEEECCcccHhH-HHHHHHHHHhCCCeEEeeh
Confidence 34446677889874 3333221 12233456666666554 999999999886632 3444466666666554433
No 112
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=61.56 E-value=1e+02 Score=30.89 Aligned_cols=94 Identities=17% Similarity=0.212 Sum_probs=55.4
Q ss_pred CCCHHhHHHHHHHHHhhhhCCCceEE-EE--eeCC----chhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHH
Q 025565 34 SMNPFCEIALEEALRIKESGLASEVV-AV--SMGP----AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVE 106 (251)
Q Consensus 34 ~in~~d~~Ale~A~~lae~~~g~~V~-al--~~G~----~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik 106 (251)
.+|+. .-+..+.+.+.+ .|..|. ++ +.+| +...+.++++.++|+|.+.+.+.-....|......+.++-+
T Consensus 118 ~lnd~--~n~~~~i~~ak~-~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~ 194 (592)
T PRK09282 118 ALNDV--RNMEVAIKAAKK-AGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKE 194 (592)
T ss_pred ecChH--HHHHHHHHHHHH-cCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHH
Confidence 34554 335555566655 465554 33 3344 23456788899999998777654446788888777777655
Q ss_pred HhCCCEEEEcceeecCCcCcHHHHHHH
Q 025565 107 VEKPGLIILGKQAIDDDCNQTGQMVAG 133 (251)
Q Consensus 107 ~~~~dlIl~G~~s~d~~~~~v~~~lA~ 133 (251)
..+ +-+|-.+-+..|-.++-.+|+
T Consensus 195 ~~~---~pi~~H~Hnt~Gla~An~laA 218 (592)
T PRK09282 195 EVD---LPVQLHSHCTSGLAPMTYLKA 218 (592)
T ss_pred hCC---CeEEEEEcCCCCcHHHHHHHH
Confidence 443 223444444444556666654
No 113
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=61.51 E-value=1e+02 Score=26.26 Aligned_cols=94 Identities=22% Similarity=0.208 Sum_probs=52.4
Q ss_pred HHHHHHhhhhCCCceEEEEeeCC-----chhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 43 LEEALRIKESGLASEVVAVSMGP-----AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 43 le~A~~lae~~~g~~V~al~~G~-----~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
+..+.+.+.. .|.+|..-.+-. +...+..+.+..+|+|.+++.+.-....|..+.+.+..+-+..+. +-+|-
T Consensus 110 ~~~~v~~ak~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~--~~l~~ 186 (237)
T PF00682_consen 110 IEEAVKYAKE-LGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPD--IPLGF 186 (237)
T ss_dssp HHHHHHHHHH-TTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTT--SEEEE
T ss_pred HHHHHHHHHh-cCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccC--CeEEE
Confidence 4444555555 576763322221 224556788888999998887755567899999888877776653 33343
Q ss_pred eeecCCcCcHHHHHHH-HcCCCc
Q 025565 118 QAIDDDCNQTGQMVAG-LLSWPQ 139 (251)
Q Consensus 118 ~s~d~~~~~v~~~lA~-~Lg~p~ 139 (251)
..-+..+-.++-.+|+ ..|+-.
T Consensus 187 H~Hnd~Gla~An~laA~~aGa~~ 209 (237)
T PF00682_consen 187 HAHNDLGLAVANALAALEAGADR 209 (237)
T ss_dssp EEBBTTS-HHHHHHHHHHTT-SE
T ss_pred EecCCccchhHHHHHHHHcCCCE
Confidence 4434344445555444 344433
No 114
>PRK13671 hypothetical protein; Provisional
Probab=61.49 E-value=59 Score=29.62 Aligned_cols=88 Identities=18% Similarity=0.172 Sum_probs=56.4
Q ss_pred CCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCc---------hhHHHHHHHHHCCCCEEEEEeeCC-CCCHHHHHHHHHH
Q 025565 34 SMNPFCEIALEEALRIKESGLASEVVAVSMGPA---------QCVDTLRTGLAMGADRGVHVEAAG-QLYPLTVAKILKS 103 (251)
Q Consensus 34 ~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~---------~~~~~l~~~la~GaD~vi~v~~~~-~~d~~a~a~~La~ 103 (251)
.-||+-.-=+..+.+.++......|+++--|.. +...-++.+...|+|-|+-+...- ...++.+|..=-+
T Consensus 8 eFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~~qrg~pa~~~~~~R~~ma~~~G~DLViELP~~~a~~sAe~FA~gaV~ 87 (298)
T PRK13671 8 EYNPFHNGHIYQINYIKNKFPNEKIIVILSGKYTQRGEIAVASFEKRKKIALKYGVDKVIKLPFEYATQAAHIFAKGAIK 87 (298)
T ss_pred eeCCccHHHHHHHHHHHHhcCCCEEEEEECcCCCCCCCCCCCCHHHHHHHHHHcCCCEEEeccHHHHhhchHHHHHHHHH
Confidence 346665544555555565523346666655542 123446778889999988765211 2345566666667
Q ss_pred HHHHhCCCEEEEcceeec
Q 025565 104 LVEVEKPGLIILGKQAID 121 (251)
Q Consensus 104 ~ik~~~~dlIl~G~~s~d 121 (251)
++.+.+.|.+.+|+.+.|
T Consensus 88 lL~~lgvd~l~FGsE~~d 105 (298)
T PRK13671 88 KLNKEKIDKLIFGSESND 105 (298)
T ss_pred HHHHcCCCEEEECCCCCC
Confidence 888889999999998754
No 115
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=61.34 E-value=44 Score=27.55 Aligned_cols=44 Identities=9% Similarity=-0.062 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 93 YPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 93 d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
+|..+......+.+..++|.|+.... .+-.++..+|..||.|++
T Consensus 40 ~p~~~~~l~~~l~~~~~~d~Vvg~~~----gGi~~A~~~a~~l~~p~~ 83 (170)
T PRK13811 40 HPALLKEIAAEVAKRYDFDVVAGVAV----GGVPLAVAVSLAAGKPYA 83 (170)
T ss_pred CHHHHHHHHHHHHhhCCCCEEEecCc----CcHHHHHHHHHHHCCCEE
Confidence 55555443333444457898876543 456789999999999964
No 116
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=61.29 E-value=1.3e+02 Score=27.31 Aligned_cols=131 Identities=15% Similarity=0.120 Sum_probs=72.2
Q ss_pred EEEEeeccCCCceEEecC--CCe-EEccCCccCCCHHhHHHHHHHHHhhhhCCCceEEEEe--eCC-----------c-h
Q 025565 5 VAIKRVVDYAVKIRVKSD--RTG-VETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVS--MGP-----------A-Q 67 (251)
Q Consensus 5 V~~K~Vpd~~~~~~~~~~--~~~-~~~~~~~~~in~~d~~Ale~A~~lae~~~g~~V~al~--~G~-----------~-~ 67 (251)
+.+|+-||-+..+++..+ +.. +-......-.|..=.+.+-.+-.+++. ...+|+++. ||- . .
T Consensus 18 ~~~~~FpdGE~~v~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~-~a~~i~~ViPYl~YsRQDr~~~~~e~is 96 (302)
T PLN02369 18 ITIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRA-SAKRITAVIPYFGYARADRKTQGRESIA 96 (302)
T ss_pred eEEEECCCCCEEEEECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHc-CCCeEEEEeecccccccccccCCCCCch
Confidence 567889998866776433 111 222222212243333344444445554 233566653 221 1 2
Q ss_pred hHHHHHHHHHCCCCEEEEEeeCC-----CC----CHHHHHHHHHHHHHHhC---CCEEEEcceeecCCcCcHHHHHHHHc
Q 025565 68 CVDTLRTGLAMGADRGVHVEAAG-----QL----YPLTVAKILKSLVEVEK---PGLIILGKQAIDDDCNQTGQMVAGLL 135 (251)
Q Consensus 68 ~~~~l~~~la~GaD~vi~v~~~~-----~~----d~~a~a~~La~~ik~~~---~dlIl~G~~s~d~~~~~v~~~lA~~L 135 (251)
+.-..+-+-.+|+|+++.++-.. .+ +.......+++.+++.. .+++++|- |..+-..+-.+|..|
T Consensus 97 ak~va~lL~~~g~d~vi~vDlHs~~i~~~F~ip~~~l~~~~~~~~~i~~~~~~~~~~vvVsp---d~gg~~~a~~~a~~l 173 (302)
T PLN02369 97 AKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTISSPDLVVVSP---DVGGVARARAFAKKL 173 (302)
T ss_pred HHHHHHHHHhcCCCEEEEEECCchHHhhccCCceecccchHHHHHHHHHhCCCCCceEEEEE---CcChHHHHHHHHHHc
Confidence 33334445567999999997322 12 23344566777776542 46777766 556667888899999
Q ss_pred -CCCc
Q 025565 136 -SWPQ 139 (251)
Q Consensus 136 -g~p~ 139 (251)
+.|+
T Consensus 174 ~~~~~ 178 (302)
T PLN02369 174 SDAPL 178 (302)
T ss_pred CCCCE
Confidence 5665
No 117
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=59.82 E-value=13 Score=31.40 Aligned_cols=45 Identities=18% Similarity=0.041 Sum_probs=31.3
Q ss_pred CCHH---HHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 92 LYPL---TVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 92 ~d~~---a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
.||. .++..+++.++..++|.|++-.+ .|=-+|+.+|..||.|++
T Consensus 30 ~~P~~l~~i~~~la~~~~~~~~D~Ivg~e~----~GiplA~~lA~~Lg~p~v 77 (189)
T PRK09219 30 VDPKLMNEIGKEFARRFKDEGITKILTIEA----SGIAPAVMAALALGVPVV 77 (189)
T ss_pred cCHHHHHHHHHHHHHHhccCCCCEEEEEcc----ccHHHHHHHHHHHCCCEE
Confidence 3554 34555555555567999886553 345689999999999985
No 118
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=59.71 E-value=45 Score=32.18 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=23.9
Q ss_pred HHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCc
Q 025565 100 ILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQ 139 (251)
Q Consensus 100 ~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~ 139 (251)
-+.+.+++.+||+++.|.. +-.+|.++|+|+
T Consensus 395 el~~~i~~~~pDl~ig~~~---------~~~~a~k~gIP~ 425 (466)
T TIGR01282 395 EFEEFVEKLKPDLVGSGIK---------EKYVFQKMGVPF 425 (466)
T ss_pred HHHHHHHHhCCCEEEecCC---------ccceeeecCCCc
Confidence 4456677889999997763 245889999998
No 119
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=58.58 E-value=37 Score=31.49 Aligned_cols=91 Identities=19% Similarity=0.069 Sum_probs=58.0
Q ss_pred HHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCc
Q 025565 45 EALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDC 124 (251)
Q Consensus 45 ~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~ 124 (251)
.|.++++-..|.+|.++-+||-. --++..|-+|||.+++.++-.+ ..| +.+|+.+++.++--.... ..
T Consensus 160 HAcr~~~vk~Gs~vLV~GAGPIG-l~t~l~Aka~GA~~VVi~d~~~--------~Rl-e~Ak~~Ga~~~~~~~~~~--~~ 227 (354)
T KOG0024|consen 160 HACRRAGVKKGSKVLVLGAGPIG-LLTGLVAKAMGASDVVITDLVA--------NRL-ELAKKFGATVTDPSSHKS--SP 227 (354)
T ss_pred hhhhhcCcccCCeEEEECCcHHH-HHHHHHHHHcCCCcEEEeecCH--------HHH-HHHHHhCCeEEeeccccc--cH
Confidence 56666765578899988889853 5567889999999999987321 122 345567888887665543 22
Q ss_pred CcHHHHHHHHcC---CCcccceeeEE
Q 025565 125 NQTGQMVAGLLS---WPQGTFASKVV 147 (251)
Q Consensus 125 ~~v~~~lA~~Lg---~p~vt~v~~l~ 147 (251)
..+...+-..+| .-+.=+|+.++
T Consensus 228 ~~~~~~v~~~~g~~~~d~~~dCsG~~ 253 (354)
T KOG0024|consen 228 QELAELVEKALGKKQPDVTFDCSGAE 253 (354)
T ss_pred HHHHHHHHhhccccCCCeEEEccCch
Confidence 345555555555 33444444444
No 120
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=58.53 E-value=61 Score=23.43 Aligned_cols=52 Identities=19% Similarity=0.116 Sum_probs=36.5
Q ss_pred HHhHHHHHHHHHhhhhCCCceEE-EEeeC-CchhHHHHHHHHHCCCCEEEEEee
Q 025565 37 PFCEIALEEALRIKESGLASEVV-AVSMG-PAQCVDTLRTGLAMGADRGVHVEA 88 (251)
Q Consensus 37 ~~d~~Ale~A~~lae~~~g~~V~-al~~G-~~~~~~~l~~~la~GaD~vi~v~~ 88 (251)
++....-..+.+|+++..+..|. +..-+ .+..+++++++.+.|.++++++.-
T Consensus 14 ~~~~~~~~~~~~l~~~~~~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvPl 67 (101)
T cd03409 14 PYKKDIEAQAHNLAESLPDFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPL 67 (101)
T ss_pred cHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeC
Confidence 66666667777887763234443 33333 456789999999999999999873
No 121
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=58.50 E-value=1.3e+02 Score=29.22 Aligned_cols=101 Identities=16% Similarity=0.177 Sum_probs=56.8
Q ss_pred ccCCCHHhHHHHHHHHHhhhhCCCceEE-EE--eeCCch----hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHH
Q 025565 32 KMSMNPFCEIALEEALRIKESGLASEVV-AV--SMGPAQ----CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSL 104 (251)
Q Consensus 32 ~~~in~~d~~Ale~A~~lae~~~g~~V~-al--~~G~~~----~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ 104 (251)
-..+| |...++.+.+.+.+ .|..+. ++ +..|.. ..+.++++.++|+|++.+.+.-....|..+...+.++
T Consensus 125 fd~ln--d~~n~~~ai~~ak~-~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~al 201 (468)
T PRK12581 125 FDALN--DPRNIQQALRAVKK-TGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGI 201 (468)
T ss_pred cccCC--CHHHHHHHHHHHHH-cCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHH
Confidence 33566 34446666666665 565542 22 223322 3466888999999987776543456888877777666
Q ss_pred HHHhCCCEEEEcceeecCCcCcHHHHHH-HHcCCC
Q 025565 105 VEVEKPGLIILGKQAIDDDCNQTGQMVA-GLLSWP 138 (251)
Q Consensus 105 ik~~~~dlIl~G~~s~d~~~~~v~~~lA-~~Lg~p 138 (251)
++ .+++-+-=++- +..|-.++-.+| ...|+-
T Consensus 202 -k~-~~~~pi~~H~H-nt~GlA~An~laAieAGad 233 (468)
T PRK12581 202 -KA-MTNLPLIVHTH-ATSGISQMTYLAAVEAGAD 233 (468)
T ss_pred -Hh-ccCCeEEEEeC-CCCccHHHHHHHHHHcCCC
Confidence 43 45544433332 333344555554 344443
No 122
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=58.49 E-value=1.3e+02 Score=26.46 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=41.1
Q ss_pred hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhC-CCEEEEcceeecCCcCcHHHHHHHH
Q 025565 68 CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEK-PGLIILGKQAIDDDCNQTGQMVAGL 134 (251)
Q Consensus 68 ~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~-~dlIl~G~~s~d~~~~~v~~~lA~~ 134 (251)
..+.++++.++|+|.+++.+.-....|..+...+..+-+..+ +++-|-=+ .-+..+-.++-.+|+.
T Consensus 145 ~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H-~Hn~~GlA~An~laAi 211 (268)
T cd07940 145 LIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVH-CHNDLGLAVANSLAAV 211 (268)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEE-ecCCcchHHHHHHHHH
Confidence 355678889999999888765446789988888877766553 12443323 2233334455555443
No 123
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=58.47 E-value=31 Score=25.47 Aligned_cols=76 Identities=17% Similarity=0.047 Sum_probs=39.4
Q ss_pred EEeeCC--chhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCC
Q 025565 60 AVSMGP--AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSW 137 (251)
Q Consensus 60 al~~G~--~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~ 137 (251)
++.+|+ ......-+.+-.+|....++ ..+...... ...|.+.++ ++|+|++-....+=+.-.-.-..|.+.|.
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~h-g~~~~~~~~--~~~l~~~i~--~aD~VIv~t~~vsH~~~~~vk~~akk~~i 76 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHH-GRDGGDEKK--ASRLPSKIK--KADLVIVFTDYVSHNAMWKVKKAAKKYGI 76 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEE-ecCCCCccc--hhHHHHhcC--CCCEEEEEeCCcChHHHHHHHHHHHHcCC
Confidence 456666 32233334455678887777 322122111 122444444 57777766554444444555666777777
Q ss_pred Ccc
Q 025565 138 PQG 140 (251)
Q Consensus 138 p~v 140 (251)
|++
T Consensus 77 p~~ 79 (97)
T PF10087_consen 77 PII 79 (97)
T ss_pred cEE
Confidence 765
No 124
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=58.34 E-value=1.3e+02 Score=27.92 Aligned_cols=95 Identities=17% Similarity=0.095 Sum_probs=56.0
Q ss_pred CCHHhHHHHH---HHHHhhhhCCCceEE---EEeeCCc--------hhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHH
Q 025565 35 MNPFCEIALE---EALRIKESGLASEVV---AVSMGPA--------QCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKI 100 (251)
Q Consensus 35 in~~d~~Ale---~A~~lae~~~g~~V~---al~~G~~--------~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~ 100 (251)
+|---+++++ .+.+++.+ .|.+|. ...+|.+ ...+..+++..+|+|++.+.+.-...+|..+...
T Consensus 153 ~~~t~~e~l~~~~~~v~~Ak~-~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~l 231 (347)
T PLN02746 153 INCSIEESLVRYREVALAAKK-HSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPM 231 (347)
T ss_pred hCCCHHHHHHHHHHHHHHHHH-cCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHH
Confidence 3333445555 55555555 577773 2245522 2455678899999999887764445789988888
Q ss_pred HHHHHHHhCC-CEEEEcceeecCCcCcHHHHHHH
Q 025565 101 LKSLVEVEKP-GLIILGKQAIDDDCNQTGQMVAG 133 (251)
Q Consensus 101 La~~ik~~~~-dlIl~G~~s~d~~~~~v~~~lA~ 133 (251)
+..+.+..+. .+=+=++ +..+-.++-.+|+
T Consensus 232 v~~l~~~~~~~~i~~H~H---nd~GlA~AN~lAA 262 (347)
T PLN02746 232 LEAVMAVVPVDKLAVHFH---DTYGQALANILVS 262 (347)
T ss_pred HHHHHHhCCCCeEEEEEC---CCCChHHHHHHHH
Confidence 8877665532 2333333 2233445555543
No 125
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=58.29 E-value=75 Score=29.61 Aligned_cols=77 Identities=25% Similarity=0.191 Sum_probs=44.3
Q ss_pred CceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCC---CC---------CHH----HHHHHHHHHHHHhCCCEEEEcce
Q 025565 55 ASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG---QL---------YPL----TVAKILKSLVEVEKPGLIILGKQ 118 (251)
Q Consensus 55 g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~---~~---------d~~----a~a~~La~~ik~~~~dlIl~G~~ 118 (251)
.++-+++..|+...-..++-+..+|.+-+..+..-. .+ ++. .--..+.+.+++.+||+++.+.
T Consensus 285 ~gkrv~I~~~~~~~~~~~~~l~elG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdl~ig~~- 363 (406)
T cd01967 285 KGKKVIIYTGGARSWHVIAALRELGMEVVAAGYEFGHDDDYERIRKILDEGTLLVDDYNDLELEELVEKLKPDLILSGI- 363 (406)
T ss_pred cCCEEEEEccCcchHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHhcCCCCcEEEeCCCHHHHHHHHHhcCCCEEEeCC-
Confidence 344445555655445555666668987555443210 00 000 0012455567778999999654
Q ss_pred eecCCcCcHHHHHHHHcCCCcc
Q 025565 119 AIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 119 s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
..-.+|.++|+|++
T Consensus 364 --------~~~~~a~~~gip~~ 377 (406)
T cd01967 364 --------KEKYVAQKLGIPFL 377 (406)
T ss_pred --------cchHHHHhcCCCEE
Confidence 34578899999995
No 126
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=57.67 E-value=1.1e+02 Score=26.86 Aligned_cols=99 Identities=18% Similarity=0.070 Sum_probs=58.7
Q ss_pred HHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCC--CCCHHHHHHHHHHHHHHhCCCEEE
Q 025565 37 PFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG--QLYPLTVAKILKSLVEVEKPGLII 114 (251)
Q Consensus 37 ~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~--~~d~~a~a~~La~~ik~~~~dlIl 114 (251)
-......+.|..|++. |.+|+.++-+... ....-..|.+ .+.+.-.. .+........+...+++.+||+|+
T Consensus 11 G~e~~~~~l~~~L~~~--g~~v~v~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dii~ 83 (355)
T cd03819 11 GVERGTLELARALVER--GHRSLVASAGGRL----VAELEAEGSR-HIKLPFISKNPLRILLNVARLRRLIREEKVDIVH 83 (355)
T ss_pred cHHHHHHHHHHHHHHc--CCEEEEEcCCCch----HHHHHhcCCe-EEEccccccchhhhHHHHHHHHHHHHHcCCCEEE
Confidence 3456778888889875 7788877765432 2223334665 23222111 223334556677888888999999
Q ss_pred EcceeecCCcCcHHHHHHHHcCCCcccceeeE
Q 025565 115 LGKQAIDDDCNQTGQMVAGLLSWPQGTFASKV 146 (251)
Q Consensus 115 ~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l 146 (251)
+-... ..-.+...+..++.|++...-+.
T Consensus 84 ~~~~~----~~~~~~~~~~~~~~~~i~~~h~~ 111 (355)
T cd03819 84 ARSRA----PAWSAYLAARRTRPPFVTTVHGF 111 (355)
T ss_pred ECCCc----hhHHHHHHHHhcCCCEEEEeCCc
Confidence 85432 12344445567788887655443
No 127
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=57.67 E-value=24 Score=33.52 Aligned_cols=96 Identities=18% Similarity=0.043 Sum_probs=52.9
Q ss_pred CHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCC--CC----CHHHHHHHHHHHHHHhC
Q 025565 36 NPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG--QL----YPLTVAKILKSLVEVEK 109 (251)
Q Consensus 36 n~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~--~~----d~~a~a~~La~~ik~~~ 109 (251)
+-+.....+.+..|++. |.+|+.++..+...++ -.|.. ++.+..-. .+ -.......+...+++.+
T Consensus 74 gG~~~~~~~l~~~L~~~--G~eV~vlt~~~~~~~~------~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~k 144 (465)
T PLN02871 74 SGYKNRFQNFIRYLREM--GDEVLVVTTDEGVPQE------FHGAK-VIGSWSFPCPFYQKVPLSLALSPRIISEVARFK 144 (465)
T ss_pred ccHHHHHHHHHHHHHHC--CCeEEEEecCCCCCcc------ccCce-eeccCCcCCccCCCceeeccCCHHHHHHHHhCC
Confidence 44455667788888874 7899998876542111 12332 22211100 00 01112235667788889
Q ss_pred CCEEEEcceeecCCcCcHHHHHHHHcCCCcccce
Q 025565 110 PGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFA 143 (251)
Q Consensus 110 ~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 143 (251)
||+|.+... +...-.+..+|..+++|++...
T Consensus 145 pDiIh~~~~---~~~~~~~~~~ak~~~ip~V~~~ 175 (465)
T PLN02871 145 PDLIHASSP---GIMVFGALFYAKLLCVPLVMSY 175 (465)
T ss_pred CCEEEECCC---chhHHHHHHHHHHhCCCEEEEE
Confidence 999988542 1112234456778899987644
No 128
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=57.64 E-value=1.5e+02 Score=27.46 Aligned_cols=88 Identities=22% Similarity=0.211 Sum_probs=50.3
Q ss_pred HHHHHHhhhhCCCceEEEEe--eCC---chhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 43 LEEALRIKESGLASEVVAVS--MGP---AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 43 le~A~~lae~~~g~~V~al~--~G~---~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
+..+.+.+.+ .|.+|..-. .+. +...+.++.+..+|+|++.+.+.-...+|..+...+..+.+..+ +- +|-
T Consensus 114 ~~~~i~~ak~-~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~--~~-l~~ 189 (363)
T TIGR02090 114 AVEAVEYAKE-HGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVK--LP-ISV 189 (363)
T ss_pred HHHHHHHHHH-cCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccC--ce-EEE
Confidence 3344455554 566654322 221 22344567788999999888765446789998888887765444 33 333
Q ss_pred eeecCCcCcHHHHHHHH
Q 025565 118 QAIDDDCNQTGQMVAGL 134 (251)
Q Consensus 118 ~s~d~~~~~v~~~lA~~ 134 (251)
..-+..+-.++--+|+.
T Consensus 190 H~Hnd~GlA~AN~laA~ 206 (363)
T TIGR02090 190 HCHNDFGLATANSIAGV 206 (363)
T ss_pred EecCCCChHHHHHHHHH
Confidence 33233334455555443
No 129
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=57.46 E-value=1.5e+02 Score=27.60 Aligned_cols=88 Identities=22% Similarity=0.239 Sum_probs=52.4
Q ss_pred HHHHHHhhhhCCCceEEEEee--CC---chhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 43 LEEALRIKESGLASEVVAVSM--GP---AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 43 le~A~~lae~~~g~~V~al~~--G~---~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
+..+.+.+.. .|.+|..-.. +. +...+.++.+..+|+|++.+.+.-....|..+...+..+.+..+..+=+=++
T Consensus 118 ~~~~v~~a~~-~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~H 196 (378)
T PRK11858 118 MVEAVEYAKD-HGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAVDIPIEVHCH 196 (378)
T ss_pred HHHHHHHHHH-CCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 3344445554 5666554321 11 2244567888899999988876544679999999888887765433434333
Q ss_pred eeecCCcCcHHHHHHHH
Q 025565 118 QAIDDDCNQTGQMVAGL 134 (251)
Q Consensus 118 ~s~d~~~~~v~~~lA~~ 134 (251)
+..+-.++--+|+.
T Consensus 197 ---nd~GlA~AN~laAv 210 (378)
T PRK11858 197 ---NDFGMATANALAGI 210 (378)
T ss_pred ---CCcCHHHHHHHHHH
Confidence 22334455555543
No 130
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=56.51 E-value=1.1e+02 Score=24.99 Aligned_cols=85 Identities=9% Similarity=0.048 Sum_probs=51.0
Q ss_pred CHHhHHHHHHHHHhhhhCCCceEEEEeeCCc-------hhHHHHHHHHHCCCCEEEEEeeCC------CCCHHHHH----
Q 025565 36 NPFCEIALEEALRIKESGLASEVVAVSMGPA-------QCVDTLRTGLAMGADRGVHVEAAG------QLYPLTVA---- 98 (251)
Q Consensus 36 n~~d~~Ale~A~~lae~~~g~~V~al~~G~~-------~~~~~l~~~la~GaD~vi~v~~~~------~~d~~a~a---- 98 (251)
...+..++..+.++... .|.++.++++... ..+.+-+.|-.+|.+-.+.-.+.. .......+
T Consensus 9 G~DS~~ll~ll~~~~~~-~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~r~~R 87 (189)
T TIGR02432 9 GVDSMALLHLLLKLQPK-LKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKALAKGKKKNLEEAAREAR 87 (189)
T ss_pred CHHHHHHHHHHHHHHHH-cCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchhhccccCCCHHHHHHHHH
Confidence 34456667777777665 4668999987632 123344556778986444322111 11222222
Q ss_pred -HHHHHHHHHhCCCEEEEcceeec
Q 025565 99 -KILKSLVEVEKPGLIILGKQAID 121 (251)
Q Consensus 99 -~~La~~ik~~~~dlIl~G~~s~d 121 (251)
..+.+++++.+++.|++|+...|
T Consensus 88 ~~~l~~~a~~~g~~~i~~Gh~~~D 111 (189)
T TIGR02432 88 YDFFEEIAKKHGADYILTAHHADD 111 (189)
T ss_pred HHHHHHHHHHcCCCEEEEcCccHH
Confidence 35556777789999999998866
No 131
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=56.26 E-value=41 Score=31.82 Aligned_cols=73 Identities=22% Similarity=0.243 Sum_probs=49.8
Q ss_pred HhhhhCCCceEEEEee--CC--chhHHHHHHHHHCCCCEEEEEeeCCC-------------------C------CHHHHH
Q 025565 48 RIKESGLASEVVAVSM--GP--AQCVDTLRTGLAMGADRGVHVEAAGQ-------------------L------YPLTVA 98 (251)
Q Consensus 48 ~lae~~~g~~V~al~~--G~--~~~~~~l~~~la~GaD~vi~v~~~~~-------------------~------d~~a~a 98 (251)
-|+++ .|.+|+++++ |. ++-+..-++|+.+||.+.++++..+. | .-..+|
T Consensus 23 wL~e~-~~~eVia~tadvGQ~eed~~~i~eKA~~~Ga~~~~viD~reeF~~~yi~~~i~ana~Yeg~YpL~TalaRPLIa 101 (403)
T COG0137 23 WLKEK-GGAEVIAVTADVGQPEEDLDAIREKALELGAEEAYVIDAREEFVEDYIFPAIKANALYEGVYPLGTALARPLIA 101 (403)
T ss_pred HHHHh-cCceEEEEEEeCCCChHHhHHHHHHHHHhCCceEEEeecHHHHHHHHHHHHHHhhceeeccccccchhhHHHHH
Confidence 35676 5689988875 54 33344567899999999999874210 1 122456
Q ss_pred HHHHHHHHHhCCCEEEEcceeec
Q 025565 99 KILKSLVEVEKPGLIILGKQAID 121 (251)
Q Consensus 99 ~~La~~ik~~~~dlIl~G~~s~d 121 (251)
+.+-+++++.+.+.|-=|+|.-+
T Consensus 102 k~lVe~A~k~ga~avaHGcTGKG 124 (403)
T COG0137 102 KKLVEAAKKEGADAVAHGCTGKG 124 (403)
T ss_pred HHHHHHHHHcCCCEEEecCCCCC
Confidence 66777888889999888887544
No 132
>PLN02293 adenine phosphoribosyltransferase
Probab=56.17 E-value=22 Score=29.93 Aligned_cols=41 Identities=5% Similarity=-0.196 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 96 TVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 96 a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
..+..+++.++..++|+|+... ..|-.++..+|.+||.|++
T Consensus 49 ~~~~~l~~~~~~~~~d~Ivg~e----~~Gi~lA~~lA~~Lg~p~v 89 (187)
T PLN02293 49 DTIDLFVERYRDMGISVVAGIE----ARGFIFGPPIALAIGAKFV 89 (187)
T ss_pred HHHHHHHHHHhhcCCCEEEEeC----CCchHHHHHHHHHHCCCEE
Confidence 4566677777666899887553 2445699999999999976
No 133
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=56.09 E-value=1.1e+02 Score=28.24 Aligned_cols=80 Identities=29% Similarity=0.237 Sum_probs=40.9
Q ss_pred HHHHHHHHhhhhCCCceEEEEeeCCchhH--HHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcce
Q 025565 41 IALEEALRIKESGLASEVVAVSMGPAQCV--DTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQ 118 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~~G~~~~~--~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~ 118 (251)
.++..+.-|.| .|.++..+........ +.++..+..+.++++. + .|. ..+.+.+++.+||+++.+.
T Consensus 282 ~~~~l~~~L~e--lG~~v~~v~~~~~~~~~~e~~~~~~~~~~~~v~~-~----~~~----~~~~~~l~~~~pdl~ig~~- 349 (398)
T PF00148_consen 282 RALGLARFLEE--LGMEVVAVGCDDKSPEDEERLRWLLEESDPEVII-D----PDP----EEIEELLEELKPDLLIGSS- 349 (398)
T ss_dssp HHHHHHHHHHH--TT-EEEEEEESSGGHHHHHHHHHHHHTTCSEEEE-S----CBH----HHHHHHHHHHT-SEEEESH-
T ss_pred hHHHHHHHHHH--cCCeEEEEEEccCchhHHHHHHHHhhCCCcEEEe-C----CCH----HHHHHHHHhcCCCEEEech-
Confidence 34444444444 3555555555443211 2234444444233333 1 123 3466677888999999765
Q ss_pred eecCCcCcHHHHHHHHcCCCcc
Q 025565 119 AIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 119 s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
-...+|.++++|++
T Consensus 350 --------~~~~~a~~~~~~~~ 363 (398)
T PF00148_consen 350 --------HERYLAKKLGIPLI 363 (398)
T ss_dssp --------HHHHHHHHTT--EE
T ss_pred --------hhHHHHHHhCCCeE
Confidence 46788999966655
No 134
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=56.01 E-value=47 Score=30.61 Aligned_cols=86 Identities=17% Similarity=0.222 Sum_probs=47.2
Q ss_pred hhhhCCCceEEEEeeCCchh---HHHHHHHHHCCC-CEEEEEeeCCCCCHHHHHH---HHHHHHHHhCCCEEEEcceeec
Q 025565 49 IKESGLASEVVAVSMGPAQC---VDTLRTGLAMGA-DRGVHVEAAGQLYPLTVAK---ILKSLVEVEKPGLIILGKQAID 121 (251)
Q Consensus 49 lae~~~g~~V~al~~G~~~~---~~~l~~~la~Ga-D~vi~v~~~~~~d~~a~a~---~La~~ik~~~~dlIl~G~~s~d 121 (251)
|.+. ++-++..+.-|..-. ...+.+ .+|. .--+.+..+.......++. .+++.+++.+||+||+-+ |
T Consensus 3 l~~~-~~~~~~li~tG~H~~~~~g~~~~~--~f~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Pd~Vlv~G---D 76 (346)
T PF02350_consen 3 LQKD-PGFELILIVTGQHLDPEMGDTFFE--GFGIPKPDYLLDSDSQSMAKSTGLAIIELADVLEREKPDAVLVLG---D 76 (346)
T ss_dssp HHCS-TTEEEEEEEECSS--CHHHHHHHH--HTT--SEEEE--STTS-HHHHHHHHHHHHHHHHHHHT-SEEEEET---T
T ss_pred hhhC-CCCCEEEEEeCCCCCHHHHHHHHh--hCCCCCCCcccccccchHHHHHHHHHHHHHHHHHhcCCCEEEEEc---C
Confidence 4443 567888888887521 223444 4554 3344444333222333444 344566778999888655 4
Q ss_pred CCcCcHHHHHHHHcCCCcc
Q 025565 122 DDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 122 ~~~~~v~~~lA~~Lg~p~v 140 (251)
+.+-..++..|.++++|++
T Consensus 77 ~~~~la~alaA~~~~ipv~ 95 (346)
T PF02350_consen 77 RNEALAAALAAFYLNIPVA 95 (346)
T ss_dssp SHHHHHHHHHHHHTT-EEE
T ss_pred CchHHHHHHHHHHhCCCEE
Confidence 4555567888999999954
No 135
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=55.17 E-value=84 Score=33.11 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 100 ILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 100 ~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
-+.+.+++.+||+++.|. -.-.+|.++|+|++
T Consensus 380 el~~~i~~~~pDLlig~~---------~~~~~a~k~giP~~ 411 (917)
T PRK14477 380 GLLRVMREKMPDLIVAGG---------KTKFLALKTRTPFL 411 (917)
T ss_pred HHHHHHHhcCCCEEEecC---------chhhHHHHcCCCeE
Confidence 445667778999999765 33568899999998
No 136
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=54.92 E-value=48 Score=29.71 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=49.8
Q ss_pred HHHhhhhCCCceEEEEeeCCchhHHH---HHH-HHHCCCCEEEEEeeCCC---CCHHHHHHHHHHHHHHhCCCEEEEcce
Q 025565 46 ALRIKESGLASEVVAVSMGPAQCVDT---LRT-GLAMGADRGVHVEAAGQ---LYPLTVAKILKSLVEVEKPGLIILGKQ 118 (251)
Q Consensus 46 A~~lae~~~g~~V~al~~G~~~~~~~---l~~-~la~GaD~vi~v~~~~~---~d~~a~a~~La~~ik~~~~dlIl~G~~ 118 (251)
.+.|++. .+-++.++.-|....... ..+ .+..+.|--..+..+.. .........+.+.+++.+||+|++-.
T Consensus 19 ~~~l~~~-~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvV~~~g- 96 (363)
T cd03786 19 IRALKKD-PGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAVLLEEKPDLVLVLG- 96 (363)
T ss_pred HHHHhcC-CCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeC-
Confidence 3455554 577888888886432221 222 22334553222222211 12333445566677778999999863
Q ss_pred eecCCcCcHHHHHHHHcCCCccc
Q 025565 119 AIDDDCNQTGQMVAGLLSWPQGT 141 (251)
Q Consensus 119 s~d~~~~~v~~~lA~~Lg~p~vt 141 (251)
+......+...|..+|+|++.
T Consensus 97 --~~~~~~~~~~aa~~~~iPvv~ 117 (363)
T cd03786 97 --DTNETLAAALAAFKLGIPVAH 117 (363)
T ss_pred --CchHHHHHHHHHHHcCCCEEE
Confidence 222223456677788999873
No 137
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=54.77 E-value=18 Score=30.59 Aligned_cols=45 Identities=13% Similarity=-0.011 Sum_probs=30.7
Q ss_pred CCHHH---HHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 92 LYPLT---VAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 92 ~d~~a---~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
.||.. ++..+++..+..++|.|++..+ .+=-++..+|.+||.|++
T Consensus 30 ~~p~~l~~v~~~l~~~~~~~~~d~Vv~~ea----~Gi~la~~lA~~Lg~p~v 77 (191)
T TIGR01744 30 IDPKLMQEVGEEFARRFADDGITKIVTIEA----SGIAPAIMTGLKLGVPVV 77 (191)
T ss_pred cCHHHHHHHHHHHHHHhccCCCCEEEEEcc----ccHHHHHHHHHHHCCCEE
Confidence 35543 4455555555557999976543 345688999999999976
No 138
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=54.57 E-value=84 Score=30.42 Aligned_cols=67 Identities=15% Similarity=0.057 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhhCCCceEEEEeeCC--chh----HHHHHHHH-HCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEE
Q 025565 41 IALEEALRIKESGLASEVVAVSMGP--AQC----VDTLRTGL-AMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLI 113 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~~G~--~~~----~~~l~~~l-a~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlI 113 (251)
.++..+.-|.+ .|.+++.+.... ..- .+.+++.. .+|.+..+.+++ .|.+ -+.+.+++.+||++
T Consensus 325 ~~i~LarfL~e--lGmevV~vgt~~~~~~~~~~d~~~l~~~~~~~~~~~~vive~---~D~~----el~~~i~~~~pDLl 395 (457)
T CHL00073 325 LEISLARFLIR--CGMIVYEIGIPYMDKRYQAAELALLEDTCRKMNVPMPRIVEK---PDNY----NQIQRIRELQPDLA 395 (457)
T ss_pred HHHHHHHHHHH--CCCEEEEEEeCCCChhhhHHHHHHHHHHhhhcCCCCcEEEeC---CCHH----HHHHHHhhCCCCEE
Confidence 44555666665 466666554442 111 11232222 255555555553 2443 34466778899999
Q ss_pred EEc
Q 025565 114 ILG 116 (251)
Q Consensus 114 l~G 116 (251)
++|
T Consensus 396 IgG 398 (457)
T CHL00073 396 ITG 398 (457)
T ss_pred Ecc
Confidence 988
No 139
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=54.53 E-value=11 Score=33.70 Aligned_cols=66 Identities=20% Similarity=0.159 Sum_probs=30.9
Q ss_pred HHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEE-EEee--C-----C-CC---CHHHHHHHHHHHHHHhCCCEEE
Q 025565 47 LRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGV-HVEA--A-----G-QL---YPLTVAKILKSLVEVEKPGLII 114 (251)
Q Consensus 47 ~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi-~v~~--~-----~-~~---d~~a~a~~La~~ik~~~~dlIl 114 (251)
++++.+ .|---++.++.+++ .+.....|||-++ |+-- . . .. +.-..++.+.+++++.+||+|+
T Consensus 143 i~~A~~-~gl~T~~yvf~~e~----A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~ 217 (268)
T PF09370_consen 143 IRKAHE-KGLFTTAYVFNEEQ----ARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIV 217 (268)
T ss_dssp HHHHHH-TT-EE--EE-SHHH----HHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EE
T ss_pred HHHHHH-CCCeeeeeecCHHH----HHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 344443 45555666776433 3333355999554 2210 0 0 11 3445667777788888999877
Q ss_pred Ecc
Q 025565 115 LGK 117 (251)
Q Consensus 115 ~G~ 117 (251)
+-+
T Consensus 218 l~h 220 (268)
T PF09370_consen 218 LCH 220 (268)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
No 140
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=54.05 E-value=1.2e+02 Score=24.58 Aligned_cols=84 Identities=14% Similarity=0.078 Sum_probs=51.6
Q ss_pred HHhHHHHHHHHHhhhhCCCceEEEEeeCCc-------hhHHHHHHHHHCCCCEEEE--EeeCC-CCCHHHHH-----HHH
Q 025565 37 PFCEIALEEALRIKESGLASEVVAVSMGPA-------QCVDTLRTGLAMGADRGVH--VEAAG-QLYPLTVA-----KIL 101 (251)
Q Consensus 37 ~~d~~Ale~A~~lae~~~g~~V~al~~G~~-------~~~~~l~~~la~GaD~vi~--v~~~~-~~d~~a~a-----~~L 101 (251)
..+.-++..+.++... .+.+|.++++... ..+..-+-+..+|.+-.+. ..+.. .......+ ..+
T Consensus 10 ~DS~vl~~l~~~~~~~-~~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l 88 (185)
T cd01992 10 PDSMALLHLLSELKPR-LGLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALAPKPGGNLEAAAREARYDFF 88 (185)
T ss_pred HHHHHHHHHHHHHHHH-cCCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeeccccCCCCCHHHHHHHHHHHHH
Confidence 3455566666666654 3568999988643 1222334466779865554 11111 23444444 456
Q ss_pred HHHHHHhCCCEEEEcceeec
Q 025565 102 KSLVEVEKPGLIILGKQAID 121 (251)
Q Consensus 102 a~~ik~~~~dlIl~G~~s~d 121 (251)
.+++++.+++.|++|+...|
T Consensus 89 ~~~a~~~~~~~i~~Gh~~dD 108 (185)
T cd01992 89 AEIAKEHGADVLLTAHHADD 108 (185)
T ss_pred HHHHHHcCCCEEEEcCCcHH
Confidence 67788889999999998765
No 141
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=53.47 E-value=69 Score=28.46 Aligned_cols=32 Identities=6% Similarity=-0.070 Sum_probs=19.9
Q ss_pred CCCEEEEcceeecCCcCcHHHHHHHHcCCCccc
Q 025565 109 KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGT 141 (251)
Q Consensus 109 ~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 141 (251)
++|+|+.-.....+..+++ +.+.+.+|+|++.
T Consensus 53 ~~D~v~~~~~g~~ge~~~~-~~~le~~gip~~G 84 (299)
T PRK14571 53 SFDVVFNVLHGTFGEDGTL-QAILDFLGIRYTG 84 (299)
T ss_pred CCCEEEEeCCCCCCCccHH-HHHHHHcCCCccC
Confidence 5787776554433334554 5567778888773
No 142
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=53.27 E-value=1.5e+02 Score=29.54 Aligned_cols=88 Identities=16% Similarity=0.169 Sum_probs=51.5
Q ss_pred HHHHHHHhhhhCCCceEEE-Ee--eCC----chhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEE
Q 025565 42 ALEEALRIKESGLASEVVA-VS--MGP----AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLII 114 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~a-l~--~G~----~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl 114 (251)
-+..+.+.+.+ .|..|.+ ++ ..| +...+.++++.++|+|.+.+.+.-....|......+.++-+..+..+
T Consensus 119 n~~~~i~~ak~-~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~~pi-- 195 (582)
T TIGR01108 119 NLQAAIQAAKK-HGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFGLPV-- 195 (582)
T ss_pred HHHHHHHHHHH-cCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCCCce--
Confidence 35566666665 5666553 23 222 23456788899999998777654445788888887777765544222
Q ss_pred EcceeecCCcCcHHHHHHH
Q 025565 115 LGKQAIDDDCNQTGQMVAG 133 (251)
Q Consensus 115 ~G~~s~d~~~~~v~~~lA~ 133 (251)
+-.+-+..+-.++-.+|+
T Consensus 196 -~~H~Hnt~Gla~An~laA 213 (582)
T TIGR01108 196 -HLHSHATTGMAEMALLKA 213 (582)
T ss_pred -EEEecCCCCcHHHHHHHH
Confidence 222323333445555543
No 143
>PRK05599 hypothetical protein; Provisional
Probab=52.90 E-value=1.3e+02 Score=25.58 Aligned_cols=71 Identities=15% Similarity=0.021 Sum_probs=44.6
Q ss_pred HHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 43 LEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 43 le~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
.+.|.+++ + |.+|+.+.-..+..++..+++...|.+++..+..| -.|...+...+.++.+.. +.|+++...
T Consensus 14 ~aia~~l~-~--g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~D-v~d~~~v~~~~~~~~~~~g~id~lv~na 85 (246)
T PRK05599 14 GEIATLLC-H--GEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFD-AQDLDTHRELVKQTQELAGEISLAVVAF 85 (246)
T ss_pred HHHHHHHh-C--CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcc-cCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 45566676 3 56777665444444555555656677666665544 457777777777777665 578888643
No 144
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=52.89 E-value=1.9e+02 Score=26.66 Aligned_cols=131 Identities=14% Similarity=0.093 Sum_probs=73.3
Q ss_pred EEEEeeccCCCceEEecC--CCe-EEccCCccCCCHHhHHHHHHHHHhhhhCCCceEEEEe--eCC-----------c-h
Q 025565 5 VAIKRVVDYAVKIRVKSD--RTG-VETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVS--MGP-----------A-Q 67 (251)
Q Consensus 5 V~~K~Vpd~~~~~~~~~~--~~~-~~~~~~~~~in~~d~~Ale~A~~lae~~~g~~V~al~--~G~-----------~-~ 67 (251)
+.+++-||-+..+++..+ +.. +-........|..=.+.|-.+-.+++. ...+|+++. +|- . .
T Consensus 48 ~~~~~FpDGE~~v~i~~~vrg~~V~ivqs~~~p~nd~l~eLll~~~alr~~-ga~ri~~ViPYl~YaRQDr~~~~~e~is 126 (330)
T PRK02812 48 MIRKRFADGELYVQIQESIRGCDVYLIQPTCAPVNDHLMELLIMVDACRRA-SARQITAVIPYYGYARADRKTAGRESIT 126 (330)
T ss_pred eEEEECCCCCEEEEeCCCCCCCEEEEECCCCCCccHHHHHHHHHHHHHHHh-CCceEEEEEecccccccccccCCCCCch
Confidence 457888998766666432 111 122222222244333444444455554 233677663 222 1 2
Q ss_pred hHHHHHHHHHCCCCEEEEEeeCC----C-C----CHHHHHHHHHHHHHHh-CCCEEEEcceeecCCcCcHHHHHHHHcC-
Q 025565 68 CVDTLRTGLAMGADRGVHVEAAG----Q-L----YPLTVAKILKSLVEVE-KPGLIILGKQAIDDDCNQTGQMVAGLLS- 136 (251)
Q Consensus 68 ~~~~l~~~la~GaD~vi~v~~~~----~-~----d~~a~a~~La~~ik~~-~~dlIl~G~~s~d~~~~~v~~~lA~~Lg- 136 (251)
+.-..+-+-++|+|+++.++-.. . + +....+..+++.+++. -.+++++|- |..+-..+-.+|..|+
T Consensus 127 ak~vA~lL~~~g~d~vitvDlH~~~~~~fF~ipv~nl~~~~~l~~~i~~~~~~~~vvVsP---D~gg~~ra~~~A~~L~~ 203 (330)
T PRK02812 127 AKLVANLITKAGADRVLAMDLHSAQIQGYFDIPCDHVYGSPVLLDYLASKNLEDIVVVSP---DVGGVARARAFAKKLND 203 (330)
T ss_pred HHHHHHHHHhcCCCEEEEEECCchHHcCccCCCceeeeChHHHHHHHHhcCCCCeEEEEE---CCccHHHHHHHHHHhCC
Confidence 33344445567999999998422 1 2 2334456777777654 357778766 4566778999999995
Q ss_pred CCc
Q 025565 137 WPQ 139 (251)
Q Consensus 137 ~p~ 139 (251)
.|+
T Consensus 204 ~~~ 206 (330)
T PRK02812 204 APL 206 (330)
T ss_pred CCE
Confidence 554
No 145
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=52.75 E-value=33 Score=30.51 Aligned_cols=62 Identities=21% Similarity=0.183 Sum_probs=46.8
Q ss_pred CCEEEEEeeCCCCCHHHHHHHHHHHHHHhC------CCEEEEcceeecCCcCcHHHHHHHHcCCCcccce
Q 025565 80 ADRGVHVEAAGQLYPLTVAKILKSLVEVEK------PGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFA 143 (251)
Q Consensus 80 aD~vi~v~~~~~~d~~a~a~~La~~ik~~~------~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 143 (251)
||++|++.+ .++.+.--|+-|++-++++. .--|+|-+.+.+++ .++-...|.++|.+++..+
T Consensus 143 AdeiyIVtS-ge~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsr~~~~e-~e~v~~fa~~igt~li~~v 210 (278)
T COG1348 143 ADEIYIVTS-GEMMALYAANNIAKGIRKYAKTGGVRLGGIICNSRSVDRE-RELVEAFAERLGTQLIHFV 210 (278)
T ss_pred CcEEEEEec-CchHHHHHHHHHHHHHHHHhhcCCcceeeEEecCCCcccH-HHHHHHHHHHhCCceEeec
Confidence 688888874 35666666777777776652 45688888887754 7789999999999998665
No 146
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=52.63 E-value=1.4e+02 Score=27.00 Aligned_cols=78 Identities=18% Similarity=0.170 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhhhCCCceEEEEeeCCch--------------hHHHHHHHHHCCCCEEEEEeeCC---CCCHHHHHHHHH
Q 025565 40 EIALEEALRIKESGLASEVVAVSMGPAQ--------------CVDTLRTGLAMGADRGVHVEAAG---QLYPLTVAKILK 102 (251)
Q Consensus 40 ~~Ale~A~~lae~~~g~~V~al~~G~~~--------------~~~~l~~~la~GaD~vi~v~~~~---~~d~~a~a~~La 102 (251)
...|+.++++|++ .+.+.+++++-|.. .++-++.+..+|+|.++.+.-+. ..+++..-+-+
T Consensus 15 q~Li~~~~~~a~~-~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~Gvd~~~~~~F~~~~a~ls~e~Fi~~~- 92 (288)
T TIGR00083 15 QALLQELKQIAEE-KGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIKGVEQLLVVVFDEEFANLSALQFIDQL- 92 (288)
T ss_pred HHHHHHHHHHHHH-hCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHcCCCEEEEeCCCHHHHcCCHHHHHHHH-
Confidence 4668889998887 56677788876631 14556667789999999997443 45677665532
Q ss_pred HHHHHhCCCEEEEcceee
Q 025565 103 SLVEVEKPGLIILGKQAI 120 (251)
Q Consensus 103 ~~ik~~~~dlIl~G~~s~ 120 (251)
+.++.++.-|++|.-..
T Consensus 93 -l~~~l~~~~ivvG~Df~ 109 (288)
T TIGR00083 93 -IVKHLHVKFLVVGDDFR 109 (288)
T ss_pred -HHhccCCcEEEECCCcc
Confidence 12446899999998664
No 147
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=52.59 E-value=71 Score=30.67 Aligned_cols=92 Identities=14% Similarity=0.008 Sum_probs=49.7
Q ss_pred hHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcce
Q 025565 39 CEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQ 118 (251)
Q Consensus 39 d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~ 118 (251)
.+.++...+.+++ .|.+++++.--+....... .-+|+.+.+.... ...+.-...|.+++++.++|.|+.|..
T Consensus 11 geia~~ii~a~~~--~Gi~~v~v~~~~d~~a~~~-----~~aD~~~~i~~~~-~~~y~d~~~i~~~a~~~~~D~I~pg~g 82 (472)
T PRK07178 11 GEIAVRIVRACAE--MGIRSVAIYSEADRHALHV-----KRADEAYSIGADP-LAGYLNPRRLVNLAVETGCDALHPGYG 82 (472)
T ss_pred cHHHHHHHHHHHH--cCCeEEEEeCCCccCCccH-----hhCCEEEEcCCCc-hhhhcCHHHHHHHHHHHCCCEEEeCCC
Confidence 4456666666776 4667766655442111111 1279988885321 111112247778889899999998753
Q ss_pred eecCCcCcHHHHHHHHcCCCcc
Q 025565 119 AIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 119 s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
... +... .+.+++.+|++++
T Consensus 83 ~ls-e~~~-~a~~~e~~Gi~~i 102 (472)
T PRK07178 83 FLS-ENAE-LAEICAERGIKFI 102 (472)
T ss_pred Ccc-cCHH-HHHHHHHcCCCcc
Confidence 211 1111 2345555555543
No 148
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=52.39 E-value=51 Score=26.86 Aligned_cols=95 Identities=13% Similarity=0.130 Sum_probs=62.3
Q ss_pred hHHHHHHHHHhhhhCCCceEEEEeeCCch---------------hHHHHHHHHHCCCCEEEEEeeCC---CCCHHHHHHH
Q 025565 39 CEIALEEALRIKESGLASEVVAVSMGPAQ---------------CVDTLRTGLAMGADRGVHVEAAG---QLYPLTVAKI 100 (251)
Q Consensus 39 d~~Ale~A~~lae~~~g~~V~al~~G~~~---------------~~~~l~~~la~GaD~vi~v~~~~---~~d~~a~a~~ 100 (251)
-...++.|.+++++ .+....++++-+.. -++-++.+-.+|+|.++.++-+. ..+++.+-.
T Consensus 21 Hq~Li~~~~~~a~~-~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~Gvd~~~~~~F~~~~~~ls~~~Fi~- 98 (157)
T PF06574_consen 21 HQKLIKKAVEIAKE-KGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLGVDYVIVIPFTEEFANLSPEDFIE- 98 (157)
T ss_dssp HHHHHHHHHHHHHH-CT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTTESEEEEE-CCCHHCCS-HHHHHH-
T ss_pred HHHHHHHHhhhhhh-cccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcCCCEEEEecchHHHHcCCHHHHHH-
Confidence 35678999999988 67888999998742 24456778889999999997443 456665544
Q ss_pred HHHHHH-HhCCCEEEEcceeecCCcCcHHHHHHHHcCC
Q 025565 101 LKSLVE-VEKPGLIILGKQAIDDDCNQTGQMVAGLLSW 137 (251)
Q Consensus 101 La~~ik-~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~ 137 (251)
.+++ +.+...|++|.-..=|..+.-....-..++-
T Consensus 99 --~iL~~~l~~~~ivvG~DfrFG~~~~G~~~~L~~~~~ 134 (157)
T PF06574_consen 99 --KILKEKLNVKHIVVGEDFRFGKNRSGDVELLKELGK 134 (157)
T ss_dssp --HHCCCHCTEEEEEEETT-EESGGGEEEHHHHHHCTT
T ss_pred --HHHHhcCCccEEEEccCccCCCCCCCCHHHHHHhcc
Confidence 3354 6789999999865545444444444444443
No 149
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=52.09 E-value=30 Score=32.61 Aligned_cols=84 Identities=20% Similarity=0.181 Sum_probs=23.7
Q ss_pred CCCHHh---HHHHHHHHHhhhhCCCceEEEEeeCCch--------hHHH--HHHHHHCCCCEEEEEeeCC-CCCHHHHHH
Q 025565 34 SMNPFC---EIALEEALRIKESGLASEVVAVSMGPAQ--------CVDT--LRTGLAMGADRGVHVEAAG-QLYPLTVAK 99 (251)
Q Consensus 34 ~in~~d---~~Ale~A~~lae~~~g~~V~al~~G~~~--------~~~~--l~~~la~GaD~vi~v~~~~-~~d~~a~a~ 99 (251)
.-|||- .+-|+.++++- +..+++++|.+.- .+.+ .+.|+..|||-|+-+.-.- ...++.+|.
T Consensus 9 EYNPFHnGH~y~i~~~k~~~----~ad~ii~vMSGnFvQRGEPAi~dKw~RA~~AL~~GaDLViELP~~~a~qsA~~FA~ 84 (388)
T PF05636_consen 9 EYNPFHNGHLYQIEQAKKIT----GADVIIAVMSGNFVQRGEPAIIDKWTRAEMALKNGADLVIELPVVYALQSAEYFAR 84 (388)
T ss_dssp --TT--HHHHHHHHHHH-------TSSEEEEEE--TTSBTSSB-SS-HHHHHHHHHHHT-SEEEE---G-----------
T ss_pred eECCccHHHHHHHHHHhccC----CCCEEEEEECCCcccCCCeeeCCHHHHHHHHHHcCCCEEEECCCcccccccccccc
Confidence 347765 45566665553 4455555665421 1223 5668999999988875321 224555556
Q ss_pred HHHHHHHHhCCCEEEEcceeec
Q 025565 100 ILKSLVEVEKPGLIILGKQAID 121 (251)
Q Consensus 100 ~La~~ik~~~~dlIl~G~~s~d 121 (251)
.--+++.+.+.|-+.+|..+.|
T Consensus 85 gaV~lL~~lgvd~l~FGsE~~~ 106 (388)
T PF05636_consen 85 GAVSLLNALGVDYLSFGSESGD 106 (388)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccc
Confidence 5557778888999999998754
No 150
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=51.99 E-value=1.5e+02 Score=27.19 Aligned_cols=74 Identities=26% Similarity=0.224 Sum_probs=45.0
Q ss_pred CCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCC--------------------CCHHHHHHHHHHHHHHhCCCEE
Q 025565 54 LASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQ--------------------LYPLTVAKILKSLVEVEKPGLI 113 (251)
Q Consensus 54 ~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~--------------------~d~~a~a~~La~~ik~~~~dlI 113 (251)
.+++-+++..++..+-...+-+..+|..-+........ .|. .-+.+.+++.+||++
T Consensus 277 l~g~~~~i~~~~~~~~~~~~~l~e~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~~~~~pdl~ 352 (399)
T cd00316 277 LGGKKVAIFGDGDLLLALARFLLELGMEVVAAGTTFGHKADYERREELLGEGTEVVDDGDL----EELEELIRELKPDLI 352 (399)
T ss_pred hcCCEEEEECCCcHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHhcCCCCEEEeCCCH----HHHHHHHhhcCCCEE
Confidence 34454555555544344555666789875555542110 122 344456777799999
Q ss_pred EEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 114 ILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 114 l~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
+.+. ....+|.++|+|++
T Consensus 353 ig~~---------~~~~~~~~~~ip~~ 370 (399)
T cd00316 353 IGGS---------KGRYIAKKLGIPLV 370 (399)
T ss_pred EECC---------cHHHHHHHhCCCEE
Confidence 9765 45678888999986
No 151
>PRK08462 biotin carboxylase; Validated
Probab=51.85 E-value=58 Score=30.80 Aligned_cols=70 Identities=26% Similarity=0.251 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHH--HHHHHHHHHHhCCCEEEEc
Q 025565 39 CEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTV--AKILKSLVEVEKPGLIILG 116 (251)
Q Consensus 39 d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~--a~~La~~ik~~~~dlIl~G 116 (251)
.+.++...+.+++ .|.+++++..-+.. .+. .+. =||+.+.+... .+...| ...|.+++++.++|.|+.|
T Consensus 13 g~~~~~~~~~~~~--~G~~~v~~~~~~d~--~~~--~~~-~ad~~~~~~~~--~~~~~y~~~~~l~~~~~~~~~D~i~pg 83 (445)
T PRK08462 13 GEIALRAIRTIQE--MGKEAIAIYSTADK--DAL--YLK-YADAKICIGGA--KSSESYLNIPAIISAAEIFEADAIFPG 83 (445)
T ss_pred cHHHHHHHHHHHH--cCCCEEEEechhhc--CCc--hhh-hCCEEEEeCCC--chhcccCCHHHHHHHHHHcCCCEEEEC
Confidence 3456666666666 47777776532211 111 111 27999988522 222344 4678888999999999988
Q ss_pred c
Q 025565 117 K 117 (251)
Q Consensus 117 ~ 117 (251)
.
T Consensus 84 ~ 84 (445)
T PRK08462 84 Y 84 (445)
T ss_pred C
Confidence 6
No 152
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=51.84 E-value=2e+02 Score=28.37 Aligned_cols=65 Identities=23% Similarity=0.282 Sum_probs=42.5
Q ss_pred HHHHHhhhhCCCceEEEEee----C----CchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhC
Q 025565 44 EEALRIKESGLASEVVAVSM----G----PAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEK 109 (251)
Q Consensus 44 e~A~~lae~~~g~~V~al~~----G----~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~ 109 (251)
..+.+.+.. .|.+|....+ | ++...+.++.+...|+|++++.+.-....|..+...+..+.+..+
T Consensus 125 ~~~v~~ak~-~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~~~ 197 (526)
T TIGR00977 125 YDTVAYLKR-QGDEVIYDAEHFFDGYKANPEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRSLK 197 (526)
T ss_pred HHHHHHHHH-cCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHhCC
Confidence 444555554 5667653222 2 233566778889999999888754345688888888887766543
No 153
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=51.41 E-value=2e+02 Score=26.40 Aligned_cols=132 Identities=20% Similarity=0.125 Sum_probs=70.1
Q ss_pred EEEEeeccCCCceEEecC--CCeE-EccCCccCCCHHhHHHHHHHHHhhhhCCCceEEEEe-----------e--CC--c
Q 025565 5 VAIKRVVDYAVKIRVKSD--RTGV-ETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVS-----------M--GP--A 66 (251)
Q Consensus 5 V~~K~Vpd~~~~~~~~~~--~~~~-~~~~~~~~in~~d~~Ale~A~~lae~~~g~~V~al~-----------~--G~--~ 66 (251)
+.+++-||-+..+++..+ +..+ -......-.|..=.+.|-.+-.+++. ...+|+++. + |. -
T Consensus 33 ~~~~~FpdGE~~v~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~alr~~-~a~~i~~ViPYl~YaRQDr~~~~~~~~i 111 (319)
T PRK04923 33 ALVTRFSDGEVQVEIEESVRRQEVFVIQPTCAPSAENLMELLVLIDALKRA-SAASVTAVIPYFGYSRQDRRMRSSRVPI 111 (319)
T ss_pred eEEEECCCCCEEEEECCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHc-CCcEEEEEeeccccccccccccCCCCCc
Confidence 457888998866676422 1111 22212211233223333334444444 234677663 2 21 1
Q ss_pred hhHHHHHHHHHCCCCEEEEEeeCC----C-C----CHHHHHHHHHHHHHHh--CCCEEEEcceeecCCcCcHHHHHHHHc
Q 025565 67 QCVDTLRTGLAMGADRGVHVEAAG----Q-L----YPLTVAKILKSLVEVE--KPGLIILGKQAIDDDCNQTGQMVAGLL 135 (251)
Q Consensus 67 ~~~~~l~~~la~GaD~vi~v~~~~----~-~----d~~a~a~~La~~ik~~--~~dlIl~G~~s~d~~~~~v~~~lA~~L 135 (251)
.+.-..+-+-++|+|+++.++-.. + + +....+..|++.+.+. ..+.++++- |..+...+..+|.+|
T Consensus 112 sak~va~ll~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~~~~~~~~vVVsP---D~Ga~~rA~~lA~~L 188 (319)
T PRK04923 112 TAKVAAKMISAMGADRVLTVDLHADQIQGFFDVPVDNVYASPLLLADIWRAYGTDNLIVVSP---DVGGVVRARAVAKRL 188 (319)
T ss_pred cHHHHHHHHHhcCCCEEEEEeCChHHHHhhcCCCceeeeChHHHHHHHHHhcCCCCCEEEEE---CCchHHHHHHHHHHc
Confidence 233344445567999999998321 1 1 2223345667776432 244556544 556678999999999
Q ss_pred C-CCcc
Q 025565 136 S-WPQG 140 (251)
Q Consensus 136 g-~p~v 140 (251)
| +|++
T Consensus 189 ~~~~~~ 194 (319)
T PRK04923 189 DDADLA 194 (319)
T ss_pred CCCCEE
Confidence 7 6653
No 154
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=51.07 E-value=75 Score=30.21 Aligned_cols=29 Identities=21% Similarity=-0.043 Sum_probs=23.0
Q ss_pred HHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 103 SLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 103 ~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
+.+++.+||+++.|. -+..+|.++|+|++
T Consensus 349 ~~l~~~~pDllig~s---------~~~~~A~k~gIP~v 377 (422)
T TIGR02015 349 EAVLEFEPDLAIGTT---------PLVQFAKEHGIPAL 377 (422)
T ss_pred HHHhhCCCCEEEcCC---------cchHHHHHcCCCEE
Confidence 556778999999774 24568999999987
No 155
>PRK03673 hypothetical protein; Provisional
Probab=50.31 E-value=2e+02 Score=27.25 Aligned_cols=71 Identities=7% Similarity=-0.110 Sum_probs=40.7
Q ss_pred HHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeE
Q 025565 72 LRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKV 146 (251)
Q Consensus 72 l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l 146 (251)
.+.+..+|++-.....- .-|.+.+..+|.++.+ .+|+|++..-..-+..-.+.--+|..+|.|++-|-..+
T Consensus 27 a~~L~~~G~~v~~~~~v--~D~~~~i~~~l~~a~~--~~DlVI~tGGlGpt~dD~t~~avA~a~g~~L~~d~e~~ 97 (396)
T PRK03673 27 ADFFFHQGLPLSRRNTV--GDNLDALVAILRERSQ--HADVLIVNGGLGPTSDDLSALAAATAAGEGLVLHEEWL 97 (396)
T ss_pred HHHHHHCCCEEEEEEEc--CCCHHHHHHHHHHHhc--cCCEEEEcCCCCCCCcccHHHHHHHHcCCCceeCHHHH
Confidence 34566778763322221 1146666677766654 57765543333333335677788888888887664443
No 156
>PLN02321 2-isopropylmalate synthase
Probab=50.17 E-value=1.8e+02 Score=29.49 Aligned_cols=72 Identities=14% Similarity=0.059 Sum_probs=45.5
Q ss_pred hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhC--CCEEEEcceeecCCcCcHHHHH-HHHcCCCcc
Q 025565 68 CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEK--PGLIILGKQAIDDDCNQTGQMV-AGLLSWPQG 140 (251)
Q Consensus 68 ~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~--~dlIl~G~~s~d~~~~~v~~~l-A~~Lg~p~v 140 (251)
..+.++.+..+|+|.+.+.+.-....|..+...+..+.+..+ .++.|--+.-.|.. -.++--+ |...|+-++
T Consensus 242 l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~G-lAvANslaAv~AGA~~V 316 (632)
T PLN02321 242 LYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLG-LSTANTLAGAHAGARQV 316 (632)
T ss_pred HHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCC-HHHHHHHHHHHhCCCEE
Confidence 445678899999998777654345789999999988877653 24555445444433 3344444 444454443
No 157
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=49.88 E-value=2.1e+02 Score=26.32 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=78.4
Q ss_pred EEEeeccCCCceEEecCCCe---EEccCCccCCCHHhHHHHH---HHHHhhhhCCCceEEEEe--eCCch----------
Q 025565 6 AIKRVVDYAVKIRVKSDRTG---VETNNVKMSMNPFCEIALE---EALRIKESGLASEVVAVS--MGPAQ---------- 67 (251)
Q Consensus 6 ~~K~Vpd~~~~~~~~~~~~~---~~~~~~~~~in~~d~~Ale---~A~~lae~~~g~~V~al~--~G~~~---------- 67 (251)
-+|+-||-+..+++.++-+. .-.+. .=+|.+.+.+| ..=.+++. ...+|+++. +|-..
T Consensus 32 ~~~rF~DGE~~V~i~EsVrg~dVfI~qs---~~~pvnd~lmELLi~idA~k~a-sA~~It~ViPY~gYARQDk~~~~rep 107 (314)
T COG0462 32 EVKRFPDGEIYVRIEESVRGKDVFIIQS---TSPPVNDNLMELLIMIDALKRA-SAKRITAVIPYFGYARQDKAFKPREP 107 (314)
T ss_pred eeEEcCCCcEEEEecccccCCeEEEEeC---CCCCcCHHHHHHHHHHHHHHhc-CCceEEEEeecchhhccCcccCCCCC
Confidence 46788888766776543221 11121 12345544443 33334443 345788773 44321
Q ss_pred -hHHHHHH-HHHCCCCEEEEEeeCC----C-----CCHHHHHHHHHHHHHHh-CC-CEEEEcceeecCCcCcHHHHHHHH
Q 025565 68 -CVDTLRT-GLAMGADRGVHVEAAG----Q-----LYPLTVAKILKSLVEVE-KP-GLIILGKQAIDDDCNQTGQMVAGL 134 (251)
Q Consensus 68 -~~~~l~~-~la~GaD~vi~v~~~~----~-----~d~~a~a~~La~~ik~~-~~-dlIl~G~~s~d~~~~~v~~~lA~~ 134 (251)
....+.. +-..|+|+++.++-.. + .|..-....+++.+++. .+ |.|+.+- |..+-.-+-.+|..
T Consensus 108 IsaklvA~lL~~aG~drv~TvDlH~~qiqgfFdipvdnl~a~p~l~~~~~~~~~~~d~vVVSP---D~Ggv~RAr~~A~~ 184 (314)
T COG0462 108 ISAKLVANLLETAGADRVLTVDLHAPQIQGFFDIPVDNLYAAPLLAEYIREKYDLDDPVVVSP---DKGGVKRARALADR 184 (314)
T ss_pred EeHHHHHHHHHHcCCCeEEEEcCCchhhcccCCCccccccchHHHHHHHHHhcCCCCcEEECC---CccHHHHHHHHHHH
Confidence 1223344 4456999999998421 1 24445678899988876 44 5566644 55667789999999
Q ss_pred cCCCcccceeeEE
Q 025565 135 LSWPQGTFASKVV 147 (251)
Q Consensus 135 Lg~p~vt~v~~l~ 147 (251)
||.| +..+.+-+
T Consensus 185 L~~~-~a~i~K~R 196 (314)
T COG0462 185 LGAP-LAIIDKRR 196 (314)
T ss_pred hCCC-EEEEEEee
Confidence 9999 55555544
No 158
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=49.87 E-value=70 Score=25.42 Aligned_cols=89 Identities=15% Similarity=0.059 Sum_probs=52.8
Q ss_pred hHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCH--------------HHHHHHHHHH
Q 025565 39 CEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYP--------------LTVAKILKSL 104 (251)
Q Consensus 39 d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~--------------~a~a~~La~~ 104 (251)
-.++|....+..++ -+|++++.|.. .+...+.+..+...-+++-+.. .+.. ..-...|.++
T Consensus 11 G~qtLdVi~~~~d~---f~v~~Lsa~~n-~~~L~~q~~~f~p~~v~i~~~~-~~~~l~~~~~~~~~~~~v~~G~~~l~~~ 85 (129)
T PF02670_consen 11 GTQTLDVIRKHPDK---FEVVALSAGSN-IEKLAEQAREFKPKYVVIADEE-AYEELKKALPSKGPGIEVLSGPEGLEEL 85 (129)
T ss_dssp HHHHHHHHHHCTTT---EEEEEEEESST-HHHHHHHHHHHT-SEEEESSHH-HHHHHHHHHHHTTSSSEEEESHHHHHHH
T ss_pred HHHHHHHHHhCCCc---eEEEEEEcCCC-HHHHHHHHHHhCCCEEEEcCHH-HHHHHHHHhhhcCCCCEEEeChHHHHHH
Confidence 34566666666554 48999999874 5777888888988877765421 1100 0113457778
Q ss_pred HHHhCCCEEEEcceeecCCcCcHHHHHHHHc
Q 025565 105 VEVEKPGLIILGKQAIDDDCNQTGQMVAGLL 135 (251)
Q Consensus 105 ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~L 135 (251)
+...++|+|+.+-.- ..|--|...|-..
T Consensus 86 ~~~~~~D~vv~Ai~G---~aGL~pt~~Ai~~ 113 (129)
T PF02670_consen 86 AEEPEVDIVVNAIVG---FAGLKPTLAAIKA 113 (129)
T ss_dssp HTHTT-SEEEE--SS---GGGHHHHHHHHHT
T ss_pred hcCCCCCEEEEeCcc---cchHHHHHHHHHC
Confidence 877899999988754 3343444444433
No 159
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=49.82 E-value=60 Score=30.67 Aligned_cols=71 Identities=28% Similarity=0.215 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 40 EIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 40 ~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
+.++..++.+++ .|.+++++...+.. ... ... -+|+.+.+......+.+.-...|.+++++.++|.|+.|.
T Consensus 12 ~~a~~i~~aa~~--~G~~vv~~~~~~d~--~a~--~~~-~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p~~ 82 (451)
T PRK08591 12 EIALRIIRACKE--LGIKTVAVHSTADR--DAL--HVQ-LADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHPGY 82 (451)
T ss_pred HHHHHHHHHHHH--cCCeEEEEcChhhc--cCC--CHh-HCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEECC
Confidence 445655656665 47777776554321 100 011 278888874221111222234677888888999999876
No 160
>PRK08862 short chain dehydrogenase; Provisional
Probab=49.81 E-value=1.6e+02 Score=24.91 Aligned_cols=73 Identities=5% Similarity=0.099 Sum_probs=44.5
Q ss_pred HHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh--CCCEEEEcc
Q 025565 41 IALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE--KPGLIILGK 117 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~--~~dlIl~G~ 117 (251)
-..+.|.+|++. |.+|+.+.-..+..++..++....|.+- +.+..| ..|.+.+...+.++.++. .+|+++...
T Consensus 17 IG~aia~~la~~--G~~V~~~~r~~~~l~~~~~~i~~~~~~~-~~~~~D-~~~~~~~~~~~~~~~~~~g~~iD~li~na 91 (227)
T PRK08862 17 LGRTISCHFARL--GATLILCDQDQSALKDTYEQCSALTDNV-YSFQLK-DFSQESIRHLFDAIEQQFNRAPDVLVNNW 91 (227)
T ss_pred HHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcCCCe-EEEEcc-CCCHHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 346778888885 6677665444333333444455557553 333322 347777777888877774 489888755
No 161
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=49.45 E-value=2e+02 Score=27.36 Aligned_cols=67 Identities=12% Similarity=0.020 Sum_probs=42.0
Q ss_pred HHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccce
Q 025565 73 RTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFA 143 (251)
Q Consensus 73 ~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 143 (251)
+.+..+|.+-..+..- .-|.+.+..+|.++.+ .+|+|++.....-+..-.+..-+|..+|.|++-|=
T Consensus 27 ~~L~~~G~~v~~~~~v--~Dd~~~i~~~l~~a~~--~~DlVIttGGlgpt~dD~t~eava~~~g~~l~~~~ 93 (413)
T TIGR00200 27 DFLAHQGLPLSRRTTV--GDNPERLKTIIRIASE--RADVLIFNGGLGPTSDDLTAETIATAKGEPLVLNE 93 (413)
T ss_pred HHHHHCCCeEEEEEEe--CCCHHHHHHHHHHHhc--CCCEEEEcCCCCCCCcccHHHHHHHHhCCCcEECH
Confidence 4466788874433221 1146667777776653 68977765544344445677778888888887554
No 162
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=49.39 E-value=1.8e+02 Score=28.58 Aligned_cols=70 Identities=20% Similarity=0.241 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhhhhCCCceEEEEee----CC----chhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhC
Q 025565 39 CEIALEEALRIKESGLASEVVAVSM----GP----AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEK 109 (251)
Q Consensus 39 d~~Ale~A~~lae~~~g~~V~al~~----G~----~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~ 109 (251)
..+.+..+.+.+.+ .|.+|..=+. |. +...+.++.+..+|+|++.+.+.-....|..+.+.+..+.+..+
T Consensus 124 ~l~~~~~~v~~ak~-~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~~ 201 (524)
T PRK12344 124 NLAMIRDSVAYLKA-HGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAPG 201 (524)
T ss_pred HHHHHHHHHHHHHH-cCCeEEEccccccccccCCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhcC
Confidence 33445555666655 5666542122 21 11345567788999999887654345688888888877766553
No 163
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=49.22 E-value=1.1e+02 Score=27.08 Aligned_cols=89 Identities=17% Similarity=0.085 Sum_probs=49.9
Q ss_pred HHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHH-HCCCCEEEEEeeCC--CCC----------HHHHHHHHHHHHHH
Q 025565 41 IALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGL-AMGADRGVHVEAAG--QLY----------PLTVAKILKSLVEV 107 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~l-a~GaD~vi~v~~~~--~~d----------~~a~a~~La~~ik~ 107 (251)
.++..|..|.++ |.+|++++- +.... .... .+|.+ ++.+.... ... .......+.+.+++
T Consensus 16 ~~~~La~~L~~~--g~eV~vv~~-~~~~~---~~~~~~~g~~-~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~i~~ 88 (348)
T TIGR01133 16 PALAVAEELIKR--GVEVLWLGT-KRGLE---KRLVPKAGIE-FYFIPVGGLRRKGSFRLIKTPLKLLKAVFQARRILKK 88 (348)
T ss_pred HHHHHHHHHHhC--CCEEEEEeC-CCcch---hcccccCCCc-eEEEeccCcCCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345778888875 678988863 32211 1111 24543 44444221 111 12344566778899
Q ss_pred hCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 108 EKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 108 ~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
.+||+|++-.. .....+..++..++.|.+
T Consensus 89 ~~pDvVi~~~~----~~~~~~~~~~~~~~~p~v 117 (348)
T TIGR01133 89 FKPDAVIGFGG----YVSGPAGLAAKLLGIPLF 117 (348)
T ss_pred cCCCEEEEcCC----cccHHHHHHHHHcCCCEE
Confidence 99999998531 222344445777888886
No 164
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=48.75 E-value=1.5e+02 Score=24.22 Aligned_cols=77 Identities=6% Similarity=-0.005 Sum_probs=41.4
Q ss_pred eEEEEeeCCch------hHHHHHH-HHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHH
Q 025565 57 EVVAVSMGPAQ------CVDTLRT-GLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQ 129 (251)
Q Consensus 57 ~V~al~~G~~~------~~~~l~~-~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~ 129 (251)
++..++.|++. ....+.. +-.+|++-...--- .-|.+.+.++|.+++...++|+|++...+.-+..-.++.
T Consensus 6 rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv--~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~e 83 (163)
T TIGR02667 6 RIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIV--KDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTPE 83 (163)
T ss_pred EEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEc--CCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHH
Confidence 55666666631 1224444 44468764332111 125677778887776555799877655544434344444
Q ss_pred HHHHHc
Q 025565 130 MVAGLL 135 (251)
Q Consensus 130 ~lA~~L 135 (251)
-++..+
T Consensus 84 al~~l~ 89 (163)
T TIGR02667 84 ALEPLF 89 (163)
T ss_pred HHHHHH
Confidence 454444
No 165
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=48.75 E-value=41 Score=30.21 Aligned_cols=45 Identities=18% Similarity=0.153 Sum_probs=21.2
Q ss_pred HHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEee
Q 025565 43 LEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEA 88 (251)
Q Consensus 43 le~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~ 88 (251)
.+.+..|++. ...+|.++++-+-...++.+.....|+|+++..+.
T Consensus 221 ~~aa~~Lk~~-GA~~V~~~~~H~i~~~~a~~~l~~~~i~~i~~tnt 265 (285)
T PRK00934 221 ATAIKILKEQ-GAKKVYVACVHPVLVGDAILKLYNAGVDEIIVTDT 265 (285)
T ss_pred HHHHHHHHHC-CCCEEEEEEEeeccCcHHHHHHHhCCCCEEEEcCC
Confidence 3444445544 23355555532211223444555556666666543
No 166
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=48.47 E-value=50 Score=26.10 Aligned_cols=109 Identities=15% Similarity=0.134 Sum_probs=55.5
Q ss_pred CCCHHhHHHHHHHHHhhhhCCCceEEEEee------CCchhHHHHHHHHHCCCC-EEEEEeeCCCCCHHHHHHHHHHHHH
Q 025565 34 SMNPFCEIALEEALRIKESGLASEVVAVSM------GPAQCVDTLRTGLAMGAD-RGVHVEAAGQLYPLTVAKILKSLVE 106 (251)
Q Consensus 34 ~in~~d~~Ale~A~~lae~~~g~~V~al~~------G~~~~~~~l~~~la~GaD-~vi~v~~~~~~d~~a~a~~La~~ik 106 (251)
.+++.+..=+..|.+|..++.. ....++= +..+++...+.+...|++ ..++++ +...++..-+...+..++
T Consensus 17 ~~~~~~~~R~~~a~~L~~~g~~-~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e-~~s~~T~ena~~~~~~~~ 94 (155)
T PF02698_consen 17 QLSPESRERLDEAARLYKAGYA-PRILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILE-PKSTNTYENARFSKRLLK 94 (155)
T ss_dssp ----S-HHHHHHHHHHHH-HHT---EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE-----SHHHHHHHHHHHHH
T ss_pred cccHhHHHHHHHHHHHHhcCCC-CeEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEcc-CCCCCHHHHHHHHHHHHH
Confidence 4566677778999999986333 3333343 123455556778889965 455555 346688888888899999
Q ss_pred HhCC-CEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEEE
Q 025565 107 VEKP-GLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVL 148 (251)
Q Consensus 107 ~~~~-dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~ 148 (251)
+.+. .++|+.+..-- .=+-+++.+.+.+....+.....
T Consensus 95 ~~~~~~iilVT~~~H~----~Ra~~~~~~~~~~~~~~~~~~~~ 133 (155)
T PF02698_consen 95 ERGWQSIILVTSPYHM----RRARMIFRKVGPDAVFIPAPPPT 133 (155)
T ss_dssp T-SSS-EEEE--CCCH----HHHHHHHHHHH--BTTC-SEEE-
T ss_pred hhcCCeEEEECCHHHH----HHHHHHHHHhCCCCeEEEeccCC
Confidence 8764 67777654311 23456777777776666555543
No 167
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=48.47 E-value=1.4e+02 Score=24.94 Aligned_cols=71 Identities=20% Similarity=0.179 Sum_probs=46.8
Q ss_pred HHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecC
Q 025565 46 ALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDD 122 (251)
Q Consensus 46 A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~ 122 (251)
+.++.+ .|.+++...+. ..+.+.+++. |+|.++.+..............|.+++++.+...++.+.-..+.
T Consensus 37 ~~~l~~--~g~~vv~~d~~---~~~~l~~al~-g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~ 107 (233)
T PF05368_consen 37 AQQLQA--LGAEVVEADYD---DPESLVAALK-GVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGADY 107 (233)
T ss_dssp HHHHHH--TTTEEEES-TT----HHHHHHHHT-TCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSGT
T ss_pred hhhhhc--ccceEeecccC---CHHHHHHHHc-CCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEecccc
Confidence 334454 35566544443 3568888888 99999988753234566777888888888899999876655444
No 168
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=48.34 E-value=15 Score=28.00 Aligned_cols=95 Identities=18% Similarity=0.119 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCC---CCHHHHHHHHHHHH--HHhCCCEEE
Q 025565 40 EIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQ---LYPLTVAKILKSLV--EVEKPGLII 114 (251)
Q Consensus 40 ~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~---~d~~a~a~~La~~i--k~~~~dlIl 114 (251)
.+..+.+..|.+. |.+|++++.++..... +...-| -+++.+..... .........+...+ ++.+||+|.
T Consensus 5 ~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Dvv~ 78 (160)
T PF13579_consen 5 RYVRELARALAAR--GHEVTVVTPQPDPEDD---EEEEDG-VRVHRLPLPRRPWPLRLLRFLRRLRRLLAARRERPDVVH 78 (160)
T ss_dssp HHHHHHHHHHHHT--T-EEEEEEE---GGG----SEEETT-EEEEEE--S-SSSGGGHCCHHHHHHHHCHHCT---SEEE
T ss_pred HHHHHHHHHHHHC--CCEEEEEecCCCCccc---ccccCC-ceEEeccCCccchhhhhHHHHHHHHHHHhhhccCCeEEE
Confidence 4567788888885 7899999988764311 111123 23444432221 11222345566666 667999999
Q ss_pred EcceeecCCcCcHHHHHHH-HcCCCcccceee
Q 025565 115 LGKQAIDDDCNQTGQMVAG-LLSWPQGTFASK 145 (251)
Q Consensus 115 ~G~~s~d~~~~~v~~~lA~-~Lg~p~vt~v~~ 145 (251)
+-... .. ..+.++. ..++|++..+-+
T Consensus 79 ~~~~~----~~-~~~~~~~~~~~~p~v~~~h~ 105 (160)
T PF13579_consen 79 AHSPT----AG-LVAALARRRRGIPLVVTVHG 105 (160)
T ss_dssp EEHHH----HH-HHHHHHHHHHT--EEEE-SS
T ss_pred ecccc----hh-HHHHHHHHccCCcEEEEECC
Confidence 87732 22 4555555 889998876654
No 169
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=48.20 E-value=61 Score=28.72 Aligned_cols=88 Identities=11% Similarity=0.054 Sum_probs=55.3
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeec
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAID 121 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d 121 (251)
+-..|.+|.+. |.+|++.+.++.. .+. +...|...++. + .+|.. .+++.+++.++|+|+--...--
T Consensus 12 gr~la~~L~~~--g~~v~~s~~t~~~-~~~---~~~~g~~~v~~---g-~l~~~----~l~~~l~~~~i~~VIDAtHPfA 77 (256)
T TIGR00715 12 SRAIAKGLIAQ--GIEILVTVTTSEG-KHL---YPIHQALTVHT---G-ALDPQ----ELREFLKRHSIDILVDATHPFA 77 (256)
T ss_pred HHHHHHHHHhC--CCeEEEEEccCCc-ccc---ccccCCceEEE---C-CCCHH----HHHHHHHhcCCCEEEEcCCHHH
Confidence 44555566654 6788888888643 222 22345444332 1 34543 3778888889999987665544
Q ss_pred CCcCcHHHHHHHHcCCCcccce
Q 025565 122 DDCNQTGQMVAGLLSWPQGTFA 143 (251)
Q Consensus 122 ~~~~~v~~~lA~~Lg~p~vt~v 143 (251)
..-.+-+...+..+|+|++-.-
T Consensus 78 ~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 78 AQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred HHHHHHHHHHHHHhCCcEEEEE
Confidence 4445567788899999988553
No 170
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=48.18 E-value=1.1e+02 Score=25.97 Aligned_cols=60 Identities=18% Similarity=0.270 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHH
Q 025565 40 EIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLV 105 (251)
Q Consensus 40 ~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~i 105 (251)
...++...+|++.++..+|..+++-.. ...+.+++..||+ .|+.. ..+++....+|..+.
T Consensus 59 ~~G~e~~~~l~~~~p~~~vvvlt~~~~--~~~v~~al~~Ga~-Gyl~K---~~~~~~l~~ai~~v~ 118 (211)
T COG2197 59 MDGLEALKQLRARGPDIKVVVLTAHDD--PAYVIRALRAGAD-GYLLK---DASPEELVEAIRAVA 118 (211)
T ss_pred CChHHHHHHHHHHCCCCcEEEEeccCC--HHHHHHHHHcCCC-EEEeC---CCCHHHHHHHHHHHH
Confidence 344666677776657778888888875 5789999999999 45544 245666555555554
No 171
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=48.16 E-value=77 Score=29.94 Aligned_cols=29 Identities=24% Similarity=0.055 Sum_probs=22.2
Q ss_pred HHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 103 SLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 103 ~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
+.+++.+||+++.+. =+..+|.+||+|++
T Consensus 344 ~~~~~~~pDl~Ig~s---------~~~~~a~~~giP~~ 372 (416)
T cd01980 344 AAVEEYRPDLAIGTT---------PLVQYAKEKGIPAL 372 (416)
T ss_pred HHHhhcCCCEEEeCC---------hhhHHHHHhCCCEE
Confidence 345677999999553 35678999999986
No 172
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=48.12 E-value=22 Score=31.19 Aligned_cols=40 Identities=8% Similarity=0.025 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 97 VAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 97 ~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
.+..+++..+..++|.|++..+ .|=-++..+|.+||.|++
T Consensus 99 v~~~la~~~~~~~~D~Vvtv~~----~GI~lA~~lA~~L~~p~v 138 (238)
T PRK08558 99 IAPVVAERFMGLRVDVVLTAAT----DGIPLAVAIASYFGADLV 138 (238)
T ss_pred HHHHHHHHccCCCCCEEEEECc----ccHHHHHHHHHHHCcCEE
Confidence 3445555555557899987664 445688889999999976
No 173
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=47.62 E-value=29 Score=31.18 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=26.5
Q ss_pred HHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCccc
Q 025565 102 KSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGT 141 (251)
Q Consensus 102 a~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 141 (251)
.+.+++.+||+|++ +++-.+...|..+|+|++.
T Consensus 86 ~~~l~~~~pDlVi~-------d~~~~~~~aA~~~~iP~i~ 118 (321)
T TIGR00661 86 INIIREYNPDLIIS-------DFEYSTVVAAKLLKIPVIC 118 (321)
T ss_pred HHHHHhcCCCEEEE-------CCchHHHHHHHhcCCCEEE
Confidence 35667789999996 3456789999999999983
No 174
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=47.33 E-value=87 Score=29.66 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=45.0
Q ss_pred CceEEEEeeCCc----hhHHHHHHHHHCCCCEEEEEeeCCCC-----------C--------------HHHHHHHHHHHH
Q 025565 55 ASEVVAVSMGPA----QCVDTLRTGLAMGADRGVHVEAAGQL-----------Y--------------PLTVAKILKSLV 105 (251)
Q Consensus 55 g~~V~al~~G~~----~~~~~l~~~la~GaD~vi~v~~~~~~-----------d--------------~~a~a~~La~~i 105 (251)
|.+|+++++-.. +.+.+-+.|..+|+.+.+.++-...+ + -...+..|.+++
T Consensus 23 g~~V~av~id~Gq~~~e~~~a~~~a~~lGi~~~~viD~~~ef~~~~~~~~i~~n~~y~~~Y~l~t~laR~li~~~l~~~A 102 (394)
T TIGR00032 23 GYEVIAYTADVGQPEEDIDAIPEKALEYGAENHYTIDAREEFVKDYGFAAIQANAFYEGTYPLSTALARPLIAKKLVEAA 102 (394)
T ss_pred CCEEEEEEEecCCChHHHHHHHHHHHHhCCCeEEEEeCHHHHHHhhchhhhcCCccccCcccccchhhHHHHHHHHHHHH
Confidence 668999887543 22334466888999766666532110 0 035566677888
Q ss_pred HHhCCCEEEEcceeecC
Q 025565 106 EVEKPGLIILGKQAIDD 122 (251)
Q Consensus 106 k~~~~dlIl~G~~s~d~ 122 (251)
++.+.+.|..|++..+.
T Consensus 103 ~~~G~~~Ia~G~t~~gn 119 (394)
T TIGR00032 103 KKEGANAVAHGCTGKGN 119 (394)
T ss_pred HHcCCCEEEECccCCcc
Confidence 88899999999977533
No 175
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=47.29 E-value=18 Score=33.34 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=36.6
Q ss_pred CCCCEEEEEeeCC----------------CCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHH
Q 025565 78 MGADRGVHVEAAG----------------QLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTG 128 (251)
Q Consensus 78 ~GaD~vi~v~~~~----------------~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~ 128 (251)
.-+..++.++||= +.|+..++++|.+++++ +||+||+|.-- |.+|-.++
T Consensus 152 ~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALRe-DPDVIlvGEmR-D~ETi~~A 216 (353)
T COG2805 152 HKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALRE-DPDVILVGEMR-DLETIRLA 216 (353)
T ss_pred cCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhc-CCCEEEEeccc-cHHHHHHH
Confidence 3466788888751 25899999999999985 99999999854 55544333
No 176
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=47.04 E-value=52 Score=24.22 Aligned_cols=49 Identities=24% Similarity=0.153 Sum_probs=36.9
Q ss_pred HhHHHHHHHHHhhhhCCCceEEEEee--CCchhHHHHHHHHHCCCCEEEEEe
Q 025565 38 FCEIALEEALRIKESGLASEVVAVSM--GPAQCVDTLRTGLAMGADRGVHVE 87 (251)
Q Consensus 38 ~d~~Ale~A~~lae~~~g~~V~al~~--G~~~~~~~l~~~la~GaD~vi~v~ 87 (251)
.....-..|.+|++. .+..|....+ +.++..+.++++.+.|+++++++.
T Consensus 8 ~~~~~~~la~~l~~~-~~~~v~~~fle~~~P~l~~~l~~l~~~g~~~ivvvP 58 (105)
T PF01903_consen 8 ANAELEDLADRLRER-LPVPVEVAFLEFAEPSLEEALERLVAQGARRIVVVP 58 (105)
T ss_dssp HHHHHHHHHHHHHHH-TSSEEEEEESSCCCSCCHHCCHHHHCCTCSEEEEEE
T ss_pred HHHHHHHHHHHHHhh-cCCeEEEEEEecCCCCHHHHHHHHHHcCCCeEEEEe
Confidence 344556778888887 4556655553 566788899999999999999986
No 177
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=46.82 E-value=2e+02 Score=25.13 Aligned_cols=63 Identities=22% Similarity=0.242 Sum_probs=40.9
Q ss_pred hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHH
Q 025565 68 CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAG 133 (251)
Q Consensus 68 ~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~ 133 (251)
..+..+.+.++|+|.+++.+.-....|+.+...+..+.+..+.. +|-..-+..+-.++-.+|+
T Consensus 141 ~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~---l~~H~Hn~~Gla~An~laA 203 (259)
T cd07939 141 LIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATDLP---LEFHAHNDLGLATANTLAA 203 (259)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCe---EEEEecCCCChHHHHHHHH
Confidence 44566788899999988876544678999998888877765533 3433333343445555543
No 178
>PRK03670 competence damage-inducible protein A; Provisional
Probab=46.79 E-value=2.1e+02 Score=25.32 Aligned_cols=67 Identities=12% Similarity=0.007 Sum_probs=40.2
Q ss_pred HHHHHCCCCEEE--EEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCccccee
Q 025565 73 RTGLAMGADRGV--HVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFAS 144 (251)
Q Consensus 73 ~~~la~GaD~vi--~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~ 144 (251)
+.+..+|.+-.. ++.| |...+..+|.+++. ..+|+|++.....-...-.+.-.+|..+|.+++-+=.
T Consensus 27 ~~L~~~G~~v~~~~iV~D----d~~~I~~~l~~a~~-~~~DlVIttGGlGpt~dD~T~eava~a~g~~l~~~~e 95 (252)
T PRK03670 27 QKLTEKGYWVRRITTVGD----DVEEIKSVVLEILS-RKPEVLVISGGLGPTHDDVTMLAVAEALGRELVLCED 95 (252)
T ss_pred HHHHHCCCEEEEEEEcCC----CHHHHHHHHHHHhh-CCCCEEEECCCccCCCCCchHHHHHHHhCCCCcCCHH
Confidence 446667876332 2222 45666666666543 2478777655443334456777888888988876543
No 179
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=46.77 E-value=2.6e+02 Score=27.20 Aligned_cols=85 Identities=13% Similarity=0.109 Sum_probs=51.4
Q ss_pred HHHHhhhhCCCceEEEEeeCCc--------hhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhC-C-CEEE
Q 025565 45 EALRIKESGLASEVVAVSMGPA--------QCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEK-P-GLII 114 (251)
Q Consensus 45 ~A~~lae~~~g~~V~al~~G~~--------~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~-~-dlIl 114 (251)
.+.+.+.. .|.+ +.++++ ...+.++.+...|++.+.+.+.-....|..+.+.+..+.+..+ + ++.|
T Consensus 121 ~~v~~a~~-~g~~---v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l 196 (494)
T TIGR00973 121 GMVKYAKN-FTDD---VEFSCEDAGRTEIPFLARIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAIL 196 (494)
T ss_pred HHHHHHHH-cCCe---EEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHhhccccCceE
Confidence 44445544 4544 344554 3456678889999998777654446789999999988877653 2 3444
Q ss_pred EcceeecCCcCcHHHHHHHH
Q 025565 115 LGKQAIDDDCNQTGQMVAGL 134 (251)
Q Consensus 115 ~G~~s~d~~~~~v~~~lA~~ 134 (251)
-=+.-.| .+-.++--+|+.
T Consensus 197 ~~H~HND-~GlAvANalaAv 215 (494)
T TIGR00973 197 SVHCHND-LGLAVANSLAAV 215 (494)
T ss_pred EEEeCCC-CChHHHHHHHHH
Confidence 3333334 334455555544
No 180
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=46.68 E-value=2.4e+02 Score=28.28 Aligned_cols=101 Identities=15% Similarity=0.080 Sum_probs=54.0
Q ss_pred ccCCCHHhHHHHHHHHHhhhhCCCceEEEE---eeCCc----hhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHH
Q 025565 32 KMSMNPFCEIALEEALRIKESGLASEVVAV---SMGPA----QCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSL 104 (251)
Q Consensus 32 ~~~in~~d~~Ale~A~~lae~~~g~~V~al---~~G~~----~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ 104 (251)
---+|..+- ++.+.+.+.+ .|..+.+. ++.|. ...+.++++.++|+|.+.+.+.-....|......+.++
T Consensus 116 fd~lnd~~n--~~~~i~~~k~-~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~al 192 (596)
T PRK14042 116 FDALNDARN--LKVAIDAIKS-HKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGL 192 (596)
T ss_pred cccCcchHH--HHHHHHHHHH-cCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHH
Confidence 334666553 4555555554 46555443 33332 23456788899999977666543356788777766666
Q ss_pred HHHhCCCEEEEcceeecCCcCcHHHHH-HHHcCCC
Q 025565 105 VEVEKPGLIILGKQAIDDDCNQTGQMV-AGLLSWP 138 (251)
Q Consensus 105 ik~~~~dlIl~G~~s~d~~~~~v~~~l-A~~Lg~p 138 (251)
-+..+-.+ +-.+-+..|-.++-.+ |...|+-
T Consensus 193 k~~~~ipi---~~H~Hnt~Gla~an~laAieaGad 224 (596)
T PRK14042 193 KQATGLPV---HLHSHSTSGLASICHYEAVLAGCN 224 (596)
T ss_pred HhhcCCEE---EEEeCCCCCcHHHHHHHHHHhCCC
Confidence 55443222 2222233333455544 4444443
No 181
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=46.64 E-value=1.7e+02 Score=25.82 Aligned_cols=88 Identities=18% Similarity=0.268 Sum_probs=57.6
Q ss_pred CCceEEEEeeCCch---hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHH--HHHHHhCCCEEEEcceeecCCcCcHH
Q 025565 54 LASEVVAVSMGPAQ---CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILK--SLVEVEKPGLIILGKQAIDDDCNQTG 128 (251)
Q Consensus 54 ~g~~V~al~~G~~~---~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La--~~ik~~~~dlIl~G~~s~d~~~~~v~ 128 (251)
.+++|-+++.|..+ ++++.-.+-.+|..- ..+.|-.-+ ..-+.+. +..+..++++++.-. +.+ |.+|
T Consensus 116 ~~g~vgvlsAGTSDlPvAeEa~~tae~lG~ev-~~~~DvGVA---GiHRLl~~l~r~~~~~~~~lIVvA---GME-GaLP 187 (254)
T COG1691 116 KGGKVGVLSAGTSDLPVAEEAAVTAEELGVEV-QKVYDVGVA---GIHRLLSALKRLKIEDADVLIVVA---GME-GALP 187 (254)
T ss_pred cCceEEEEecCCCCcchHHHHHHHHHHhCceE-EEEEeeccc---hHHhhhhHHHHHHhhCCCeEEEEc---ccc-cchH
Confidence 35688899999864 678888888889763 333322211 2234555 334455777655433 223 5699
Q ss_pred HHHHHHcCCCcccceeeEEEe
Q 025565 129 QMVAGLLSWPQGTFASKVVLD 149 (251)
Q Consensus 129 ~~lA~~Lg~p~vt~v~~l~~~ 149 (251)
.-+|.+.+.|+|.-=+++-+-
T Consensus 188 svvagLvD~PVIavPTsVGYG 208 (254)
T COG1691 188 SVVAGLVDVPVIAVPTSVGYG 208 (254)
T ss_pred HHHHhccCCCeEecccccccC
Confidence 999999999999777777653
No 182
>PLN00200 argininosuccinate synthase; Provisional
Probab=46.48 E-value=1e+02 Score=29.36 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=48.0
Q ss_pred HhhhhCCCceEEEEeeCCch----hHHHHHHHHHCCCCEEEEEeeCCC-----------CCH--------------HHHH
Q 025565 48 RIKESGLASEVVAVSMGPAQ----CVDTLRTGLAMGADRGVHVEAAGQ-----------LYP--------------LTVA 98 (251)
Q Consensus 48 ~lae~~~g~~V~al~~G~~~----~~~~l~~~la~GaD~vi~v~~~~~-----------~d~--------------~a~a 98 (251)
.++++ .|.+|+++++.... .+.+-+.|..+|+...++++-.+. .++ ...+
T Consensus 24 ~L~e~-~G~eViav~id~Gq~~~el~~a~~~A~~lGi~~~~v~dl~~ef~~~~i~p~i~~Na~ye~~Y~~~tsl~Rp~i~ 102 (404)
T PLN00200 24 WLREN-YGCEVVCFTADVGQGIEELEGLEAKAKASGAKQLVVKDLREEFVRDYIFPCLRANAIYEGKYLLGTSMARPLIA 102 (404)
T ss_pred HHHHh-hCCeEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhhcCHHHHcCCcccceeccccchhhHHHH
Confidence 33444 46789988775432 234456677899987777652100 011 1557
Q ss_pred HHHHHHHHHhCCCEEEEcceeec
Q 025565 99 KILKSLVEVEKPGLIILGKQAID 121 (251)
Q Consensus 99 ~~La~~ik~~~~dlIl~G~~s~d 121 (251)
..|.+.+++.+.+.|.-|++..+
T Consensus 103 ~~lv~~A~~~G~~~VahG~tgkG 125 (404)
T PLN00200 103 KAMVDIAKEVGADAVAHGATGKG 125 (404)
T ss_pred HHHHHHHHHcCCCEEEeCCcCCC
Confidence 88888889999999999998744
No 183
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=46.46 E-value=1.8e+02 Score=24.47 Aligned_cols=61 Identities=11% Similarity=0.056 Sum_probs=36.8
Q ss_pred CceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 55 ASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 55 g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
..+|.+|.-..++ ...+..|.++|..-. .++.....+...+...+.+.+++.+||++++-+
T Consensus 27 ~~~I~~vi~~~~~-~~~~~~A~~~gip~~-~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~ 87 (190)
T TIGR00639 27 PASVVLVISNKPD-AYGLERAAQAGIPTF-VLSLKDFPSREAFDQAIIEELRAHEVDLVVLAG 87 (190)
T ss_pred CceEEEEEECCcc-chHHHHHHHcCCCEE-EECccccCchhhhhHHHHHHHHhcCCCEEEEeC
Confidence 3455554444333 345677888998843 333211123344456677888889999998754
No 184
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=46.29 E-value=1.2e+02 Score=31.25 Aligned_cols=109 Identities=15% Similarity=0.081 Sum_probs=78.4
Q ss_pred HHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeC-CCCCHHHHHHHHHHHHHHh-------
Q 025565 37 PFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAA-GQLYPLTVAKILKSLVEVE------- 108 (251)
Q Consensus 37 ~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~-~~~d~~a~a~~La~~ik~~------- 108 (251)
+...+.+....++.+. . .+=++.+|+-. .+-++++.+.|++-+-.++.= ...|+.+.++.+.+.++..
T Consensus 149 ~lG~~~l~~~~~~~~~-~--~iPv~AiGGI~-~~~~~~~~~~Ga~giAvisai~~a~d~~~a~~~l~~~~~~~~~~~~~~ 224 (755)
T PRK09517 149 ALGVDGIAEIAAVAQD-H--GIASVAIGGVG-LRNAAELAATGIDGLCVVSAIMAAANPAAAARELRTAFQPTRSPETQT 224 (755)
T ss_pred CCCHHHHHHHHHhcCc-C--CCCEEEECCCC-HHHHHHHHHcCCCEEEEehHhhCCCCHHHHHHHHHHHHHHhhcccccc
Confidence 3466667666555542 1 34566777654 456788999999999988731 2457888787777776644
Q ss_pred -----------------CCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEEEe
Q 025565 109 -----------------KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLD 149 (251)
Q Consensus 109 -----------------~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~ 149 (251)
..=|.+.|.-++++.|-|-=-+....||.-..+-++.+.+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~vLtIaGsD~sggAGi~aDlkt~~alg~~~~~viTaltaQ 282 (755)
T PRK09517 225 ELSQTELQGAFVNSPSAPRVLSIAGTDPTGGAGIQADLKSIAAGGGYGMCVVTALVAQ 282 (755)
T ss_pred ccccccccccccccCCCCeEEEEeccCCCcHHHHHHHHHHHHHcCCcccchheeEeeE
Confidence 11377788877777777777888999999999999999887
No 185
>PRK07831 short chain dehydrogenase; Provisional
Probab=46.28 E-value=1.9e+02 Score=24.64 Aligned_cols=73 Identities=18% Similarity=0.126 Sum_probs=44.4
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHH-CCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLA-MGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la-~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
....+.+++++ |.+|+++.-++...++...++.. +|..++..+..| ..+...+..++.++.++. ..|+++.-.
T Consensus 31 G~~ia~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~~~~~~~~~~~g~id~li~~a 105 (262)
T PRK07831 31 GSATARRALEE--GARVVISDIHERRLGETADELAAELGLGRVEAVVCD-VTSEAQVDALIDAAVERLGRLDVLVNNA 105 (262)
T ss_pred HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEcc-CCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 35566777765 66777655554333333333322 576777666544 456777778887777765 578777654
No 186
>PRK08444 hypothetical protein; Provisional
Probab=46.27 E-value=81 Score=29.30 Aligned_cols=75 Identities=12% Similarity=0.041 Sum_probs=47.5
Q ss_pred HHHHHHHHhhhhCCCceEEEE------------------------------eeCCchhHHHHHHHHHCCCCEEEEEeeCC
Q 025565 41 IALEEALRIKESGLASEVVAV------------------------------SMGPAQCVDTLRTGLAMGADRGVHVEAAG 90 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al------------------------------~~G~~~~~~~l~~~la~GaD~vi~v~~~~ 90 (251)
.....|-+++++..|.+|+-. .+.+++..+.++++.++|+.++.++....
T Consensus 28 ~L~~~A~~vR~~~~G~~Vt~~~n~~In~TN~C~~~C~FCaf~~~~~~~~~y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~ 107 (353)
T PRK08444 28 TLGKYADKKRTKLHGKKVYFNVNRHINPTNICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKNSVKRGIKEVHIVSAHN 107 (353)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCCcccccccccCCccCCCccCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEeccCC
Confidence 445777888877566666533 12223455667788889999999997532
Q ss_pred -CCCHHHHHHHHHHHHHHhCCCEEEEc
Q 025565 91 -QLYPLTVAKILKSLVEVEKPGLIILG 116 (251)
Q Consensus 91 -~~d~~a~a~~La~~ik~~~~dlIl~G 116 (251)
..+.+.|.+++ ..+|+.-|++-+++
T Consensus 108 p~~~~e~y~e~i-r~Ik~~~p~i~i~a 133 (353)
T PRK08444 108 PNYGYEWYLEIF-KKIKEAYPNLHVKA 133 (353)
T ss_pred CCCCHHHHHHHH-HHHHHHCCCceEee
Confidence 33444455544 55565557777775
No 187
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=46.21 E-value=1.4e+02 Score=28.71 Aligned_cols=30 Identities=17% Similarity=0.079 Sum_probs=21.8
Q ss_pred HHHHHH--hCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 102 KSLVEV--EKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 102 a~~ik~--~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
.+.+++ .+||+++.+. ..-.+|.++|+|++
T Consensus 372 ~~~i~~~~~~~dliig~s---------~~~~~A~~~gip~~ 403 (454)
T cd01973 372 EKRIKNKGLELDLILGHS---------KGRYIAIDNNIPMV 403 (454)
T ss_pred HHHHHhcCCCCCEEEECC---------ccHHHHHHcCCCEE
Confidence 345555 3699999554 45689999999986
No 188
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=45.76 E-value=1.4e+02 Score=30.31 Aligned_cols=96 Identities=8% Similarity=0.012 Sum_probs=60.5
Q ss_pred CceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCC----C------CCHH-------HHHHHHHHHHHHhC--------
Q 025565 55 ASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG----Q------LYPL-------TVAKILKSLVEVEK-------- 109 (251)
Q Consensus 55 g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~----~------~d~~-------a~a~~La~~ik~~~-------- 109 (251)
+.+|-.+-.|+-. -..++.+++.|+-++.++++|. + ++.. .-|.+.++.+++..
T Consensus 338 ~~kVLIvGaGGLG-s~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~ 416 (664)
T TIGR01381 338 QLKVLLLGAGTLG-CNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGH 416 (664)
T ss_pred cCeEEEECCcHHH-HHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEe
Confidence 3466666666532 4578899999999999998653 1 2211 12344444454443
Q ss_pred --------------------------------CCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEEEecCCCeEEE
Q 025565 110 --------------------------------PGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMV 157 (251)
Q Consensus 110 --------------------------------~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~l~~ 157 (251)
+|+|+...-+ .+++.++-.++...+.|+++.+ +.. ++.+.+
T Consensus 417 ~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn--~esR~L~n~~c~~~~kplI~aA--lGf---dg~lvm 489 (664)
T TIGR01381 417 RLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDS--REARWLPTVLCSRHKKIAISAA--LGF---DSYVVM 489 (664)
T ss_pred eeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCC--HHHHHHHHHHHHHhCCCEEEEE--ecc---ceEEEE
Confidence 4666555432 3567889999999999999864 444 344444
Q ss_pred E
Q 025565 158 E 158 (251)
Q Consensus 158 ~ 158 (251)
.
T Consensus 490 r 490 (664)
T TIGR01381 490 R 490 (664)
T ss_pred E
Confidence 4
No 189
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=45.60 E-value=1.2e+02 Score=28.21 Aligned_cols=88 Identities=8% Similarity=0.015 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEccee
Q 025565 40 EIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQA 119 (251)
Q Consensus 40 ~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s 119 (251)
..++..+.+|++.+++.+|.+.++.+.. .+..+++...++. ++.+ + .|.. ..+..++++.+||+|++..+.
T Consensus 64 ~~~~~l~~~l~~~~~~~~i~~t~~t~~~-~~~~~~~~~~~~~-~~~~--P--~d~~---~~~~~~l~~~~Pd~v~~~~~~ 134 (425)
T PRK05749 64 RAAIPLIRALRKRYPDLPILVTTMTPTG-SERAQALFGDDVE-HRYL--P--YDLP---GAVRRFLRFWRPKLVIIMETE 134 (425)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeCCCccH-HHHHHHhcCCCce-EEEe--c--CCcH---HHHHHHHHhhCCCEEEEEecc
Confidence 3556677777776556666655555433 3444444333332 2222 2 2222 477778899999999886432
Q ss_pred ecCCcCcHHHHHHHHcCCCcc
Q 025565 120 IDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 120 ~d~~~~~v~~~lA~~Lg~p~v 140 (251)
. .--....+.+.|+|++
T Consensus 135 --~--~~~~l~~~~~~~ip~v 151 (425)
T PRK05749 135 --L--WPNLIAELKRRGIPLV 151 (425)
T ss_pred --h--hHHHHHHHHHCCCCEE
Confidence 1 1112233567888876
No 190
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=45.50 E-value=67 Score=30.49 Aligned_cols=69 Identities=29% Similarity=0.231 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHH--HHHHHHHHHHhCCCEEEEcc
Q 025565 40 EIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTV--AKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 40 ~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~--a~~La~~ik~~~~dlIl~G~ 117 (251)
+.++..++.+++ .|.+++++...+.. .+. . ..-+|+.+.+... .+...| ...|.+++++.++|.|+.|.
T Consensus 12 ~~~~~~~~aa~~--lG~~vv~~~~~~d~--~a~--~-~~~aD~~~~~~~~--~~~~~y~d~~~l~~~a~~~~id~I~pg~ 82 (449)
T TIGR00514 12 EIALRILRACKE--LGIKTVAVHSTADR--DAL--H-VLLADEAVCIGPA--PSAKSYLNIPNIISAAEITGADAIHPGY 82 (449)
T ss_pred HHHHHHHHHHHH--cCCeEEEEEChhhh--ccc--c-cccCCEEEEcCCC--CchhchhCHHHHHHHHHHhCCCEEEeCC
Confidence 445656666665 47788887654321 110 1 1127988887421 122233 34678888889999999876
No 191
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=45.22 E-value=1.8e+02 Score=25.74 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=46.4
Q ss_pred HHHHHHhhhhCCCceEEEEeeCCc----hhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEE-Ecc
Q 025565 43 LEEALRIKESGLASEVVAVSMGPA----QCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLII-LGK 117 (251)
Q Consensus 43 le~A~~lae~~~g~~V~al~~G~~----~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl-~G~ 117 (251)
++...+++++..+..+..++--.. ..+..+++|...|+|-+++.+- +..-+.-+.+.+++++.++|+ |..
T Consensus 77 ~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDL-----p~ee~~~~~~~~~~~gl~~I~lvap 151 (258)
T PRK13111 77 FELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDL-----PPEEAEELRAAAKKHGLDLIFLVAP 151 (258)
T ss_pred HHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCC-----CHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 566667774324445543332221 2467899999999998888432 234556777778889988887 666
Q ss_pred ee
Q 025565 118 QA 119 (251)
Q Consensus 118 ~s 119 (251)
++
T Consensus 152 ~t 153 (258)
T PRK13111 152 TT 153 (258)
T ss_pred CC
Confidence 55
No 192
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=45.19 E-value=1.6e+02 Score=24.96 Aligned_cols=71 Identities=14% Similarity=0.080 Sum_probs=41.9
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
..+.|.+++++ |.+|+.+.-.+...++...++...| +++.+..| -.|.+.+.+.+.++.++. ++|+++...
T Consensus 13 G~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~D-v~d~~~~~~~~~~~~~~~g~id~li~na 84 (259)
T PRK08340 13 GFNVARELLKK--GARVVISSRNEENLEKALKELKEYG--EVYAVKAD-LSDKDDLKNLVKEAWELLGGIDALVWNA 84 (259)
T ss_pred HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEcC-CCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 34567788875 6677665444333233333333334 44444433 457777888887777765 689888643
No 193
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=45.02 E-value=1.2e+02 Score=27.65 Aligned_cols=59 Identities=20% Similarity=0.199 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcC
Q 025565 67 QCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLS 136 (251)
Q Consensus 67 ~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg 136 (251)
+.++.++..-+.+++++|++.+ +.+....|+..+++.+.. ++++++..| ++..+|+.+-
T Consensus 130 S~~dl~~Ai~~~~a~~VivLPN--n~ni~~aa~qa~~~~~~~--~v~VipTks-------~~qGlaAl~~ 188 (313)
T PF13684_consen 130 STEDLLNAIEKVGADEVIVLPN--NKNIILAAEQAARLSEDK--NVVVIPTKS-------IPQGLAALLV 188 (313)
T ss_pred CHHHHHHHHHhCCCCeEEEEeC--CchHHHHHHHHHHHhcCC--CEEEEecCC-------HHHHHHHHHH
Confidence 4566666666668888888865 345566666666666533 577777655 5555655543
No 194
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=44.98 E-value=1.2e+02 Score=28.50 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=14.0
Q ss_pred HHHHHHHHhCCCEEEEcc
Q 025565 100 ILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 100 ~La~~ik~~~~dlIl~G~ 117 (251)
-+.+.+++.+||+++.|.
T Consensus 334 ~l~~~i~~~~pDllig~~ 351 (407)
T TIGR01279 334 RQLQRIRATRPDLVVTGL 351 (407)
T ss_pred HHHHHHHhcCCCEEecCc
Confidence 344677888999999776
No 195
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=44.79 E-value=1.7e+02 Score=28.11 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=22.8
Q ss_pred HHHHHHH--hCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 101 LKSLVEV--EKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 101 La~~ik~--~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
+.+.+++ .+||+++.++ -+-.+|.+||+|++
T Consensus 378 l~~~i~~~~~~~Dliig~s---------~~~~~a~k~gip~~ 410 (461)
T TIGR02931 378 LESRIKNQGLELDLILGHS---------KGRFISIDYNIPMV 410 (461)
T ss_pred HHHHHHhcCCCCCEEEECc---------chHHHHHHcCCCEE
Confidence 3445554 5799999654 45789999999986
No 196
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=44.73 E-value=99 Score=21.77 Aligned_cols=56 Identities=9% Similarity=-0.020 Sum_probs=36.7
Q ss_pred EEEeeCCC-CCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCccc
Q 025565 84 VHVEAAGQ-LYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGT 141 (251)
Q Consensus 84 i~v~~~~~-~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 141 (251)
+++...+. .|...+-.+|.++.++...-+|+.|....+- ..++.+-|...|++++.
T Consensus 6 Vli~GgR~~~D~~~i~~~Ld~~~~~~~~~~lvhGga~~Ga--D~iA~~wA~~~gv~~~~ 62 (71)
T PF10686_consen 6 VLITGGRDWTDHELIWAALDKVHARHPDMVLVHGGAPKGA--DRIAARWARERGVPVIR 62 (71)
T ss_pred EEEEECCccccHHHHHHHHHHHHHhCCCEEEEECCCCCCH--HHHHHHHHHHCCCeeEE
Confidence 34444443 3777778888877776644455555542333 36999999999998864
No 197
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=44.72 E-value=27 Score=28.90 Aligned_cols=46 Identities=15% Similarity=0.253 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceee
Q 025565 100 ILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASK 145 (251)
Q Consensus 100 ~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 145 (251)
.+++++++-+-=+|++|......+..+.--++|+++++|+++....
T Consensus 19 ~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~ 64 (162)
T TIGR00315 19 LVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADT 64 (162)
T ss_pred HHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCcc
Confidence 4445555544456677766544456778889999999999987754
No 198
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=44.63 E-value=2.2e+02 Score=24.94 Aligned_cols=94 Identities=12% Similarity=0.003 Sum_probs=59.2
Q ss_pred HhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 38 FCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 38 ~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
......+.+..|++. |.+|+.++..+.. ..........|.. ++.+. ........+...+.+.+++.+||+|.+..
T Consensus 14 ~~~~~~~l~~~L~~~--~~~v~~i~~~~~~-~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dvv~~~~ 88 (358)
T cd03812 14 IETFIMNYYRNLDRS--KIQFDFLVTSKEE-GDYDDEIEKLGGK-IYYIP-ARKKNPLKYFKKLYKLIKKNKYDIVHVHG 88 (358)
T ss_pred HHHHHHHHHHhcCcc--ceEEEEEEeCCCC-cchHHHHHHcCCe-EEEec-CCCccHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 345566777778753 6789988887643 1222334444654 33333 22345666777788888888999999866
Q ss_pred eeecCCcCcHHHHHHHHcCCCcc
Q 025565 118 QAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 118 ~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
.. ...++..++.+++.|.+
T Consensus 89 ~~----~~~~~~~~~~~~~~~~~ 107 (358)
T cd03812 89 SS----ASGFILLAAKKAGVKVR 107 (358)
T ss_pred cc----hhHHHHHHHhhCCCCeE
Confidence 43 23466667777776653
No 199
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=44.41 E-value=1.2e+02 Score=27.81 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhCCCEEE-EcceeecCCcCcHHHHHHHHcCCCcccceeeEEEecC-CCeEEEEEEeCCeEEEEEECC
Q 025565 95 LTVAKILKSLVEVEKPGLII-LGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKE-KQLAMVEREVDGGLETLELDL 172 (251)
Q Consensus 95 ~a~a~~La~~ik~~~~dlIl-~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~-~~~l~~~R~~~gG~~~~~~~~ 172 (251)
......+.+.+++.++|+|+ +|.- ...+++..+|.+.|+|++.--+.+..+.+ ++...+.. .+++.......
T Consensus 73 ~~~v~~~~~~~~~~~~d~IIaiGGG----sv~D~ak~vA~~rgip~I~IPTT~~tds~~s~~a~i~~--~~~~~~~~~~~ 146 (350)
T PRK00843 73 MEEVEKVEEKAKDVNAGFLIGVGGG----KVIDVAKLAAYRLGIPFISVPTAASHDGIASPRASIKG--GGKPVSVKAKP 146 (350)
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCc----hHHHHHHHHHHhcCCCEEEeCCCccCCcccCCceEEEe--CCceeeecCCC
Confidence 34455566666667899888 5553 33458999999999998755444432211 22223322 23333333446
Q ss_pred CEEEEEeCCCC
Q 025565 173 PAVITTDLRLN 183 (251)
Q Consensus 173 P~vvtv~~~~~ 183 (251)
|..+-+.+...
T Consensus 147 P~~vivD~~~l 157 (350)
T PRK00843 147 PLAVIADTEII 157 (350)
T ss_pred CeEEEEcHHHH
Confidence 87777766543
No 200
>PRK05370 argininosuccinate synthase; Validated
Probab=44.36 E-value=3e+02 Score=26.59 Aligned_cols=89 Identities=13% Similarity=0.135 Sum_probs=61.4
Q ss_pred HHHhhhhCCCceEEEEee--CC---chhHHHHHHHHHCCCCEEEEEeeCC------------C--C--------------
Q 025565 46 ALRIKESGLASEVVAVSM--GP---AQCVDTLRTGLAMGADRGVHVEAAG------------Q--L-------------- 92 (251)
Q Consensus 46 A~~lae~~~g~~V~al~~--G~---~~~~~~l~~~la~GaD~vi~v~~~~------------~--~-------------- 92 (251)
...|+++ |.+|+++++ |. ++.+..-++|++.||++.++++... + |
T Consensus 28 l~wL~e~--~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~~i~aI~anA~Y~~~~e~~Y~l~t~L 105 (447)
T PRK05370 28 LLWMRQK--GAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAEGIAAIQCGAFHISTGGVTYFNTTPL 105 (447)
T ss_pred HHHHHhc--CCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHHHHHHHHHHcCCccccccCccccCCCcc
Confidence 3457775 678988765 54 3335666889999999999987311 0 1
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCC
Q 025565 93 YPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWP 138 (251)
Q Consensus 93 d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p 138 (251)
.....|..+.+++++.+.+.|-=|+|- +.+.|+=.-++.+.=.|
T Consensus 106 aRplia~~lv~~A~~~ga~aIAHG~TG--KGNDQvRFE~~~~aL~P 149 (447)
T PRK05370 106 GRAVTGTMLVAAMKEDGVNIWGDGSTY--KGNDIERFYRYGLLTNP 149 (447)
T ss_pred hHHHHHHHHHHHHHHhCCcEEEEcCCC--CCCchHHHHHHHHHhCC
Confidence 234567788888888999999988874 44457777777555444
No 201
>PRK07109 short chain dehydrogenase; Provisional
Probab=44.28 E-value=1.9e+02 Score=26.10 Aligned_cols=73 Identities=14% Similarity=0.015 Sum_probs=46.4
Q ss_pred HHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 41 IALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
-..+.|.+|+++ |.+|+.+.-.++..++..+++.+.|.+ +..+..| -.|...+..++.++.++. ..|+++...
T Consensus 20 IG~~la~~la~~--G~~Vvl~~R~~~~l~~~~~~l~~~g~~-~~~v~~D-v~d~~~v~~~~~~~~~~~g~iD~lInnA 93 (334)
T PRK07109 20 VGRATARAFARR--GAKVVLLARGEEGLEALAAEIRAAGGE-ALAVVAD-VADAEAVQAAADRAEEELGPIDTWVNNA 93 (334)
T ss_pred HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEEec-CCCHHHHHHHHHHHHHHCCCCCEEEECC
Confidence 345677778875 678877665544444455556667765 4444433 457777777777777665 579887654
No 202
>PRK08223 hypothetical protein; Validated
Probab=44.27 E-value=1.6e+02 Score=26.73 Aligned_cols=83 Identities=17% Similarity=0.041 Sum_probs=53.9
Q ss_pred ceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCC----C------CCHH----HHHHHHHHHHHHhC------------
Q 025565 56 SEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG----Q------LYPL----TVAKILKSLVEVEK------------ 109 (251)
Q Consensus 56 ~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~----~------~d~~----a~a~~La~~ik~~~------------ 109 (251)
.+|..+-.|+-. ...+..+.+.|+-++.++++|. + ++.. .-+.+.++.+++.+
T Consensus 28 s~VlIvG~GGLG-s~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l 106 (287)
T PRK08223 28 SRVAIAGLGGVG-GIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGI 106 (287)
T ss_pred CCEEEECCCHHH-HHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEeccc
Confidence 478888877643 5578888899999999999763 1 2222 23344444454443
Q ss_pred -----------CCEEEEcceeecC---CcCcHHHHHHHHcCCCcccc
Q 025565 110 -----------PGLIILGKQAIDD---DCNQTGQMVAGLLSWPQGTF 142 (251)
Q Consensus 110 -----------~dlIl~G~~s~d~---~~~~v~~~lA~~Lg~p~vt~ 142 (251)
+|+|+-+. |. +++.+--..|..+++|+++.
T Consensus 107 ~~~n~~~ll~~~DlVvD~~---D~~~~~~r~~ln~~c~~~~iP~V~~ 150 (287)
T PRK08223 107 GKENADAFLDGVDVYVDGL---DFFEFDARRLVFAACQQRGIPALTA 150 (287)
T ss_pred CccCHHHHHhCCCEEEECC---CCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 47777433 32 34566667789999998864
No 203
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=44.19 E-value=3e+02 Score=26.98 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=40.8
Q ss_pred hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhC--CCEEEEcceeecCCcCcHHHHHHHH
Q 025565 68 CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEK--PGLIILGKQAIDDDCNQTGQMVAGL 134 (251)
Q Consensus 68 ~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~--~dlIl~G~~s~d~~~~~v~~~lA~~ 134 (251)
..+.++++..+|+|++.+.+.-....|+.+.+.+..+.+..+ +++.|-=+.-.| .+-.++-.+|+.
T Consensus 241 l~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND-~GlAvANslaAi 308 (503)
T PLN03228 241 LCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHND-LGLATANTIAGI 308 (503)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCC-cChHHHHHHHHH
Confidence 345678888999999877664446789998888877766542 233333233223 334455555443
No 204
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=43.96 E-value=2.9e+02 Score=26.28 Aligned_cols=98 Identities=18% Similarity=0.108 Sum_probs=61.2
Q ss_pred HHHHHHHHhhhhCCCceEE--EEeeCC---chhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 025565 41 IALEEALRIKESGLASEVV--AVSMGP---AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIIL 115 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~--al~~G~---~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~ 115 (251)
+-+..+.+.+.. .|.++. +-.+.. +...+..+.+.++|++++.+.+.-...+|..+...+..+.+...++..+-
T Consensus 117 ~~~~~~v~ya~~-~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~~~~l~ 195 (409)
T COG0119 117 ERAVDAVEYARD-HGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPNKVILS 195 (409)
T ss_pred HHHHHHHHHHHH-cCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHhCCCCCeEE
Confidence 334444444544 455554 333332 22445677888889999998765445799999999998888776577777
Q ss_pred cceeecCCcCcHHHHHHHHc-CCCcc
Q 025565 116 GKQAIDDDCNQTGQMVAGLL-SWPQG 140 (251)
Q Consensus 116 G~~s~d~~~~~v~~~lA~~L-g~p~v 140 (251)
.+.-.|.. -.++--+|+.. |+-++
T Consensus 196 ~H~HnD~G-~AvANslaAv~aGa~~v 220 (409)
T COG0119 196 VHCHNDLG-MAVANSLAAVEAGADQV 220 (409)
T ss_pred EEecCCcc-hHHHHHHHHHHcCCcEE
Confidence 77666644 44555555443 44333
No 205
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=43.87 E-value=31 Score=30.41 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceee
Q 025565 94 PLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASK 145 (251)
Q Consensus 94 ~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 145 (251)
....+++++++++..+|+|+|+|-.. .---+.|.+.|.+....+..
T Consensus 122 D~~la~av~~av~~~dp~L~l~~Lag------s~~~~~a~~~GL~~~~EvFA 167 (252)
T COG1540 122 DRALADAVAEAVAAFDPSLILMGLAG------SELLRAAKRAGLPVAEEVFA 167 (252)
T ss_pred CHHHHHHHHHHHHHhCCCceEEecCc------HHHHHHHHHcCchhHHHHhc
Confidence 45789999999999999999999854 25678999999998866543
No 206
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=43.74 E-value=47 Score=30.23 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=29.8
Q ss_pred HHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEccee
Q 025565 69 VDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQA 119 (251)
Q Consensus 69 ~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s 119 (251)
.+.++++-+.|+|-+|++++-..++.. ..||+-+. +.|+||.|++-
T Consensus 197 ~~~v~~Lr~~gvD~II~LsH~g~~~~d---~~lA~~v~--gIDvIigGHsH 242 (313)
T cd08162 197 QPSIDALTAQGINKIILLSHLQQISIE---QALAALLS--GVDVIIAGGSN 242 (313)
T ss_pred HHHHHHHHHCCCCEEEEEecccccchH---HHHHhcCC--CCCEEEeCCCC
Confidence 445666667899999999865323322 33433322 79999999865
No 207
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=43.58 E-value=17 Score=28.41 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=33.4
Q ss_pred HHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceee
Q 025565 100 ILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASK 145 (251)
Q Consensus 100 ~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 145 (251)
.+++++++-+-=+|++|......+...---++|+++|+|+++.-..
T Consensus 3 ~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~ 48 (137)
T PF00205_consen 3 EAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMG 48 (137)
T ss_dssp HHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGG
T ss_pred HHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCcc
Confidence 4555666544448888888765567788899999999999877655
No 208
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=43.52 E-value=55 Score=24.84 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=37.3
Q ss_pred EEeeCCchhHHHHHHHHHCC--CCEEEEEeeCCC-------CC-HHHHHHHHHHHHHHhCCCEEEEccee
Q 025565 60 AVSMGPAQCVDTLRTGLAMG--ADRGVHVEAAGQ-------LY-PLTVAKILKSLVEVEKPGLIILGKQA 119 (251)
Q Consensus 60 al~~G~~~~~~~l~~~la~G--aD~vi~v~~~~~-------~d-~~a~a~~La~~ik~~~~dlIl~G~~s 119 (251)
++.+|...-+.++...++.- ++++|....... .+ ...--..|++++++.+.|++++|...
T Consensus 3 VLviGsGgREHAia~~l~~s~~v~~v~~aPGN~G~~~~~~~~~~~~~d~~~l~~~a~~~~idlvvvGPE~ 72 (100)
T PF02844_consen 3 VLVIGSGGREHAIAWKLSQSPSVEEVYVAPGNPGTAELGKNVPIDITDPEELADFAKENKIDLVVVGPEA 72 (100)
T ss_dssp EEEEESSHHHHHHHHHHTTCTTEEEEEEEE--TTGGGTSEEE-S-TT-HHHHHHHHHHTTESEEEESSHH
T ss_pred EEEECCCHHHHHHHHHHhcCCCCCEEEEeCCCHHHHhhceecCCCCCCHHHHHHHHHHcCCCEEEECChH
Confidence 35566655566777777543 667777664221 00 12223578889999999999999864
No 209
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=43.43 E-value=2.1e+02 Score=27.55 Aligned_cols=31 Identities=23% Similarity=0.133 Sum_probs=22.7
Q ss_pred HHHHHH-HhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 101 LKSLVE-VEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 101 La~~ik-~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
+.+.++ +.+||+++.+. -.-.+|.+||+|++
T Consensus 375 l~~~l~~~~~~dllig~s---------~~~~~A~klgip~~ 406 (457)
T TIGR02932 375 LEKRIKAKLDIDLIMGHS---------KGRYVAIDANIPMV 406 (457)
T ss_pred HHHHHhhcCCCCEEEECC---------chHHHHHHcCCCEE
Confidence 334444 45899999655 45789999999986
No 210
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=43.41 E-value=2e+02 Score=24.30 Aligned_cols=49 Identities=10% Similarity=-0.043 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCccc
Q 025565 93 YPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGT 141 (251)
Q Consensus 93 d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 141 (251)
|.+.+.++|.++++..++|+||+...+.-+..-.++..+...++-.+-.
T Consensus 50 d~~~I~~aL~~a~~~~~~DlIITTGGtg~g~rDvTpeAv~~l~~keipG 98 (193)
T PRK09417 50 EQDLIEQTLIELVDEMGCDLVLTTGGTGPARRDVTPEATLAVADKEMPG 98 (193)
T ss_pred CHHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCcHHHHHHHHhCCcCCc
Confidence 5677888888887666799888765554445456777777777755443
No 211
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=43.38 E-value=2.1e+02 Score=25.62 Aligned_cols=72 Identities=19% Similarity=0.144 Sum_probs=46.5
Q ss_pred HHHHHHhhhhCCCceEEEEeeCCc----hhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcce
Q 025565 43 LEEALRIKESGLASEVVAVSMGPA----QCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQ 118 (251)
Q Consensus 43 le~A~~lae~~~g~~V~al~~G~~----~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~ 118 (251)
++...++.+++.+..++.++--.+ ..+..+++|...|+|-+++.+- |...+.-+.+.+++++-|+|++-.-
T Consensus 82 lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDL-----P~ee~~~~~~~~~~~gi~~I~lvaP 156 (265)
T COG0159 82 LELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDL-----PPEESDELLKAAEKHGIDPIFLVAP 156 (265)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCC-----ChHHHHHHHHHHHHcCCcEEEEeCC
Confidence 555556665433334444443332 2466789999999999988763 3455667778888888887766554
Q ss_pred e
Q 025565 119 A 119 (251)
Q Consensus 119 s 119 (251)
+
T Consensus 157 t 157 (265)
T COG0159 157 T 157 (265)
T ss_pred C
Confidence 4
No 212
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=43.34 E-value=1.5e+02 Score=27.01 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=52.8
Q ss_pred CHHhHHHHHHHHHhhhhCCC----ceE-EEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCC---CCHHHHHHHHHHHHHH
Q 025565 36 NPFCEIALEEALRIKESGLA----SEV-VAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQ---LYPLTVAKILKSLVEV 107 (251)
Q Consensus 36 n~~d~~Ale~A~~lae~~~g----~~V-~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~---~d~~a~a~~La~~ik~ 107 (251)
+|.-...-..|..|.+. .. ..| .|...|++..++.++++.+.|+++++++.--.. ..+-.+-..+.+++++
T Consensus 70 SPl~~~t~~q~~~l~~~-l~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~iv~lPL~PqyS~~t~gs~~~~~~~~l~~ 148 (322)
T TIGR00109 70 SPLLQITEQQAHALEKR-LPNEIDFKVYIAMRYGEPFTEEAVKELLKDGVERAVVLPLYPHFSSSTTGSSFNELAEALKK 148 (322)
T ss_pred CcHHHHHHHHHHHHHHH-hccCCCceEEEeeccCCCCHHHHHHHHHhcCCCeEEEEeCCcccccccHHHHHHHHHHHHHh
Confidence 45555555666677765 32 333 367789888999999999999999999985332 2333444445555555
Q ss_pred hC---CCEEEEccee
Q 025565 108 EK---PGLIILGKQA 119 (251)
Q Consensus 108 ~~---~dlIl~G~~s 119 (251)
.. |++-++-.-.
T Consensus 149 ~~~~~~~~~~i~~~~ 163 (322)
T TIGR00109 149 LRSLRPTISVIESWY 163 (322)
T ss_pred cccCCCeEEEeCccc
Confidence 42 5555554433
No 213
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=43.24 E-value=2.1e+02 Score=25.91 Aligned_cols=89 Identities=7% Similarity=0.005 Sum_probs=52.2
Q ss_pred HHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceee
Q 025565 41 IALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAI 120 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~ 120 (251)
.+.-....|++.+++.+++.++ .+ ...+.++.. -.+|+++..+.............+...+++.+||+++.=..+
T Consensus 16 l~tP~l~~Lk~~~P~a~I~~l~-~~-~~~~l~~~~--P~vd~vi~~~~~~~~~~~~~~~~l~~~lr~~~yD~vidl~~~- 90 (348)
T PRK10916 16 MSQSLYRTLKARYPQAIIDVMA-PA-WCRPLLSRM--PEVNEAIPMPLGHGALEIGERRRLGHSLREKRYDRAYVLPNS- 90 (348)
T ss_pred hHHHHHHHHHHHCCCCeEEEEe-ch-hhHHHHhcC--CccCEEEecccccchhhhHHHHHHHHHHHhcCCCEEEECCCc-
Confidence 3445666788887888999886 33 234444432 358999887632211111112345566778899999965432
Q ss_pred cCCcCcHHHHHHHHcCCCc
Q 025565 121 DDDCNQTGQMVAGLLSWPQ 139 (251)
Q Consensus 121 d~~~~~v~~~lA~~Lg~p~ 139 (251)
.-...++...|++.
T Consensus 91 -----~~s~~l~~~~~~~~ 104 (348)
T PRK10916 91 -----FKSALVPFFAGIPH 104 (348)
T ss_pred -----HHHHHHHHHcCCCe
Confidence 23456666666653
No 214
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=42.97 E-value=1.7e+02 Score=23.33 Aligned_cols=65 Identities=12% Similarity=-0.073 Sum_probs=38.0
Q ss_pred HHHH-HHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCC
Q 025565 71 TLRT-GLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSW 137 (251)
Q Consensus 71 ~l~~-~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~ 137 (251)
.++. +-.+|++-...--- .-|++.+.++|.++.++.++|+|++...++-+.--.++.-++..++.
T Consensus 24 ~l~~~l~~~G~~v~~~~~v--~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t~~al~~~~~~ 89 (152)
T cd00886 24 ALVELLEEAGHEVVAYEIV--PDDKDEIREALIEWADEDGVDLILTTGGTGLAPRDVTPEATRPLLDK 89 (152)
T ss_pred HHHHHHHHcCCeeeeEEEc--CCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcCcHHHHHHHhCC
Confidence 3444 55678763332111 12577888888888764479988776555444434455555655543
No 215
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=42.90 E-value=1.6e+02 Score=28.22 Aligned_cols=67 Identities=24% Similarity=0.154 Sum_probs=40.8
Q ss_pred EEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCC-------------CCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcC
Q 025565 59 VAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQ-------------LYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCN 125 (251)
Q Consensus 59 ~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~-------------~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~ 125 (251)
+++..++..+-...+-+..+|.+-+..+..+.. -|.+ .+.+.++ +||+++.+.
T Consensus 314 vai~~~~~~~~~la~~L~elG~~v~~~~~~~~~~~~~~~~~~~i~~~D~~----~le~~~~--~~dliig~s-------- 379 (455)
T PRK14476 314 VAIAAEPDLLLALGSFLAEMGAEIVAAVTTTKSPALEDLPAEEVLIGDLE----DLEELAE--GADLLITNS-------- 379 (455)
T ss_pred EEEEeCHHHHHHHHHHHHHCCCEEEEEEeCCCcHHHHhCCcCcEEeCCHH----HHHHhcc--CCCEEEECc--------
Confidence 455555544444556666777776665543210 1223 3444444 799999665
Q ss_pred cHHHHHHHHcCCCcc
Q 025565 126 QTGQMVAGLLSWPQG 140 (251)
Q Consensus 126 ~v~~~lA~~Lg~p~v 140 (251)
-.-.+|.++|+|++
T Consensus 380 -~~~~~a~~~gip~~ 393 (455)
T PRK14476 380 -HGRQAAERLGIPLL 393 (455)
T ss_pred -hhHHHHHHcCCCEE
Confidence 44679999999997
No 216
>PRK09213 pur operon repressor; Provisional
Probab=42.86 E-value=33 Score=30.82 Aligned_cols=105 Identities=12% Similarity=0.048 Sum_probs=57.3
Q ss_pred CCccCCCHHhHHHHHHHHHhhhhC--------CCceEEEEeeCCchhHHHHHHHHHCCCCE-------EEEEeeCCCCCH
Q 025565 30 NVKMSMNPFCEIALEEALRIKESG--------LASEVVAVSMGPAQCVDTLRTGLAMGADR-------GVHVEAAGQLYP 94 (251)
Q Consensus 30 ~~~~~in~~d~~Ale~A~~lae~~--------~g~~V~al~~G~~~~~~~l~~~la~GaD~-------vi~v~~~~~~d~ 94 (251)
.+++.|++ |..-+..+++--..+ .|+--..-.++.+.+.+.+.++...=.++ -+.++ +--.+|
T Consensus 35 ~aks~ise-d~~i~~~~~~~~~~g~~~t~~ga~ggv~~~p~~~~~~a~~~~~~L~~~L~~~~rilpGgf~y~s-dll~~P 112 (271)
T PRK09213 35 AAKSSISE-DLVIIKETFEKQGIGTLETVPGAAGGVKYIPSISEEEAREFVEELCERLSEPDRILPGGYLYLS-DLLGNP 112 (271)
T ss_pred cccchhhh-hHHHHHHHHHhcCCceEEEeCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHhCCccCCCCeEEeC-cccCCH
Confidence 45667776 777777766543320 11111222344445555554443321111 12222 223355
Q ss_pred HH---HHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 95 LT---VAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 95 ~a---~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
.. .++.+|...+..++|.|++-.+ .|--++..+|..||.|++
T Consensus 113 ~~l~~i~~~la~~~~~~~iD~Vvtvet----~GIplA~~vA~~L~vp~v 157 (271)
T PRK09213 113 SILRKIGRIIASAFADKKIDAVMTVET----KGIPLAYAVANYLNVPFV 157 (271)
T ss_pred HHHHHHHHHHHHHhcccCCCEEEEEcc----ccHHHHHHHHHHHCCCEE
Confidence 43 4455555555557999887664 344689999999999976
No 217
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=42.81 E-value=1.6e+02 Score=22.88 Aligned_cols=74 Identities=11% Similarity=0.121 Sum_probs=48.2
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCC---chhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 42 ALEEALRIKESGLASEVVAVSMGP---AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~---~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
..+.|+++.++ |..++.++--. +..++...++-+.| +++..+..| ..+.+.....+.++.++. ..|+++...
T Consensus 13 G~~~a~~l~~~--g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D-~~~~~~~~~~~~~~~~~~~~ld~li~~a 88 (167)
T PF00106_consen 13 GRALARALARR--GARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECD-LSDPESIRALIEEVIKRFGPLDILINNA 88 (167)
T ss_dssp HHHHHHHHHHT--TTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESE-TTSHHHHHHHHHHHHHHHSSESEEEEEC
T ss_pred HHHHHHHHHhc--CceEEEEeeecccccccccccccccccc-ccccccccc-cccccccccccccccccccccccccccc
Confidence 46778888886 44544444443 33444555666778 888877744 457888888888887665 678888655
Q ss_pred ee
Q 025565 118 QA 119 (251)
Q Consensus 118 ~s 119 (251)
..
T Consensus 89 g~ 90 (167)
T PF00106_consen 89 GI 90 (167)
T ss_dssp SC
T ss_pred cc
Confidence 33
No 218
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=42.73 E-value=1.6e+02 Score=24.83 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=47.2
Q ss_pred HHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHH-CCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh--CCCEEEEcc
Q 025565 43 LEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLA-MGADRGVHVEAAGQLYPLTVAKILKSLVEVE--KPGLIILGK 117 (251)
Q Consensus 43 le~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la-~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~--~~dlIl~G~ 117 (251)
...|+++++. |.+|+...-..+..++.++++.. +| .+++.+ | ..+...+...+.++.+.. ..|+++...
T Consensus 10 ~aia~~l~~~--Ga~V~~~~~~~~~~~~~~~~l~~~~~-~~~~~~--D-~~~~~~v~~~~~~~~~~~~g~iD~lV~~a 81 (241)
T PF13561_consen 10 RAIARALAEE--GANVILTDRNEEKLADALEELAKEYG-AEVIQC--D-LSDEESVEALFDEAVERFGGRIDILVNNA 81 (241)
T ss_dssp HHHHHHHHHT--TEEEEEEESSHHHHHHHHHHHHHHTT-SEEEES--C-TTSHHHHHHHHHHHHHHHCSSESEEEEEE
T ss_pred HHHHHHHHHC--CCEEEEEeCChHHHHHHHHHHHHHcC-CceEee--c-CcchHHHHHHHHHHHhhcCCCeEEEEecc
Confidence 4567888875 77888877776654556666665 56 445333 2 457888888888888885 589777543
No 219
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=42.64 E-value=31 Score=34.12 Aligned_cols=53 Identities=25% Similarity=0.225 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeE
Q 025565 93 YPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKV 146 (251)
Q Consensus 93 d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l 146 (251)
++..+..+...+.+...| +|++|......+..+.--++|++||+|+++....-
T Consensus 188 ~~~~i~~~~~~L~~AkrP-vIl~G~g~~~~~a~~~l~~lae~~g~PV~tt~~gk 240 (588)
T TIGR01504 188 TRAQIEKAVEMLNAAERP-LIVAGGGVINADAADLLQEFAELTGVPVIPTLMGW 240 (588)
T ss_pred CHHHHHHHHHHHHhCCCc-EEEECCCcchhhhHHHHHHHHHHhCCCeEEcCccC
Confidence 455444444444344567 88888877555566778999999999998776553
No 220
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=42.61 E-value=32 Score=28.70 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=32.3
Q ss_pred HHHHHHHHhCCCEEEEcceeec-CCcCcHHHHHHHHcCCCcccceee
Q 025565 100 ILKSLVEVEKPGLIILGKQAID-DDCNQTGQMVAGLLSWPQGTFASK 145 (251)
Q Consensus 100 ~La~~ik~~~~dlIl~G~~s~d-~~~~~v~~~lA~~Lg~p~vt~v~~ 145 (251)
.+++++++-+-=+|++|....+ .+..+-.-.+|+++++|+++....
T Consensus 26 ~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~ 72 (171)
T PRK00945 26 IAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGS 72 (171)
T ss_pred HHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEcccc
Confidence 4455555544448888887655 445566788999999999877663
No 221
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=42.33 E-value=54 Score=28.56 Aligned_cols=50 Identities=22% Similarity=0.191 Sum_probs=27.0
Q ss_pred CCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCc-----hhHHHHHHHHHCCCCEEEE
Q 025565 34 SMNPFCEIALEEALRIKESGLASEVVAVSMGPA-----QCVDTLRTGLAMGADRGVH 85 (251)
Q Consensus 34 ~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~-----~~~~~l~~~la~GaD~vi~ 85 (251)
++-|..+..-..+.+...- +..+......|- ...++.+++.+.|+|-+++
T Consensus 130 VivP~~eQ~~~~~~kW~~l--~~~~~~a~asPy~~~~~~l~~Aa~~L~~~gadlIvL 184 (221)
T PF07302_consen 130 VIVPLPEQIAQQAEKWQPL--GNPVVVAAASPYEGDEEELAAAARELAEQGADLIVL 184 (221)
T ss_pred EEecCHHHHHHHHHHHHhc--CCCeEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 4556555555555565553 345555544432 1233556666778885554
No 222
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=42.31 E-value=2.2e+02 Score=28.00 Aligned_cols=87 Identities=10% Similarity=0.012 Sum_probs=52.2
Q ss_pred CCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCch-hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCE
Q 025565 34 SMNPFCEIALEEALRIKESGLASEVVAVSMGPAQ-CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGL 112 (251)
Q Consensus 34 ~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~-~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dl 112 (251)
.++-|| +=.|+.+++. .+.++..+.++.-. ....+..++ |.+=.+..- .+.+..-..+ .-+++.++++
T Consensus 80 ~~s~~D---il~al~~a~~-~~~~ia~vg~~~~~~~~~~~~~ll--~~~i~~~~~----~~~~e~~~~~-~~l~~~G~~~ 148 (526)
T TIGR02329 80 KPTGFD---VMQALARARR-IASSIGVVTHQDTPPALRRFQAAF--NLDIVQRSY----VTEEDARSCV-NDLRARGIGA 148 (526)
T ss_pred cCChhh---HHHHHHHHHh-cCCcEEEEecCcccHHHHHHHHHh--CCceEEEEe----cCHHHHHHHH-HHHHHCCCCE
Confidence 456667 3456667766 56688888886532 122344444 444222221 1233333344 4455679999
Q ss_pred EEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 113 IILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 113 Il~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
|++|. +...+|..+|.+.+
T Consensus 149 viG~~---------~~~~~A~~~gl~~i 167 (526)
T TIGR02329 149 VVGAG---------LITDLAEQAGLHGV 167 (526)
T ss_pred EECCh---------HHHHHHHHcCCceE
Confidence 99765 77899999999865
No 223
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=42.29 E-value=36 Score=31.29 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=26.7
Q ss_pred HHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccce
Q 025565 101 LKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFA 143 (251)
Q Consensus 101 La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 143 (251)
+.+.+++.+||+|++.... -.+..+|+.+|+|+++..
T Consensus 84 l~~~~~~~~pDlVi~d~~~------~~~~~~A~~~giP~v~~~ 120 (392)
T TIGR01426 84 LEEAYKGDRPDLIVYDIAS------WTGRLLARKWDVPVISSF 120 (392)
T ss_pred HHHHhcCCCCCEEEECCcc------HHHHHHHHHhCCCEEEEe
Confidence 3344555689999986532 257889999999998653
No 224
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=42.26 E-value=2.5e+02 Score=25.00 Aligned_cols=71 Identities=17% Similarity=0.077 Sum_probs=41.7
Q ss_pred hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc----eeecCCcCcHHHHHHHHcCCCcccce
Q 025565 68 CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK----QAIDDDCNQTGQMVAGLLSWPQGTFA 143 (251)
Q Consensus 68 ~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~----~s~d~~~~~v~~~lA~~Lg~p~vt~v 143 (251)
+.-..+++..+|.+--.+..- .-+...+..+|..+.++ +|+|++.. |..| ...--+|..||.||+=+-
T Consensus 23 a~~la~~L~~~G~~v~~~~~V--gD~~~~I~~~l~~a~~r--~D~vI~tGGLGPT~DD----iT~e~vAka~g~~lv~~~ 94 (255)
T COG1058 23 AAFLADELTELGVDLARITTV--GDNPDRIVEALREASER--ADVVITTGGLGPTHDD----LTAEAVAKALGRPLVLDE 94 (255)
T ss_pred HHHHHHHHHhcCceEEEEEec--CCCHHHHHHHHHHHHhC--CCEEEECCCcCCCccH----hHHHHHHHHhCCCcccCH
Confidence 334456777788763332221 11566777777777664 88777533 3322 355567888888887664
Q ss_pred eeE
Q 025565 144 SKV 146 (251)
Q Consensus 144 ~~l 146 (251)
..+
T Consensus 95 ~al 97 (255)
T COG1058 95 EAL 97 (255)
T ss_pred HHH
Confidence 444
No 225
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=42.15 E-value=81 Score=28.57 Aligned_cols=57 Identities=12% Similarity=0.031 Sum_probs=39.0
Q ss_pred EEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccc
Q 025565 83 GVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTF 142 (251)
Q Consensus 83 vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 142 (251)
+-++.-|...++.....+..+++.+.+.++|+.+.+|.- ......+++..++|+++-
T Consensus 43 i~lv~~D~~~~p~~a~~~a~~li~~d~v~~iiG~~~s~~---~~a~~~~~~~~~ip~i~~ 99 (357)
T cd06337 43 VEIIVRDSQSNPNRAGLVAQELILTDKVDLLLAGGTPDT---TNPVSDQCEANGVPCIST 99 (357)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHhccCccEEEecCCcch---hhHHHHHHHHhCCCeEEe
Confidence 334433446788888888888998888988887654421 112235788999999874
No 226
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=42.11 E-value=1.1e+02 Score=26.88 Aligned_cols=86 Identities=8% Similarity=0.007 Sum_probs=54.4
Q ss_pred ceEEEEeeCCchhHHHHHHHH-HCCCCEEEEEeeC----C---CCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcH
Q 025565 56 SEVVAVSMGPAQCVDTLRTGL-AMGADRGVHVEAA----G---QLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQT 127 (251)
Q Consensus 56 ~~V~al~~G~~~~~~~l~~~l-a~GaD~vi~v~~~----~---~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v 127 (251)
.+|..++-=.++..+.+++-+ +.|.+-+-....+ . ..+++.+.+.+.++. .-++|.|++.+|. -.+-.+
T Consensus 121 ~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~-~~~aDAifisCTn--Lrt~~v 197 (239)
T TIGR02990 121 RRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAF-DPDADALFLSCTA--LRAATC 197 (239)
T ss_pred CEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhc-CCCCCEEEEeCCC--chhHHH
Confidence 366666555555556666644 4677644432211 1 236666555544442 3479999999876 456789
Q ss_pred HHHHHHHcCCCccccee
Q 025565 128 GQMVAGLLSWPQGTFAS 144 (251)
Q Consensus 128 ~~~lA~~Lg~p~vt~v~ 144 (251)
-+.+-..||.|++|..+
T Consensus 198 i~~lE~~lGkPVlsSNq 214 (239)
T TIGR02990 198 AQRIEQAIGKPVVTSNQ 214 (239)
T ss_pred HHHHHHHHCCCEEEHHH
Confidence 99999999999987644
No 227
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=41.98 E-value=2.1e+02 Score=24.15 Aligned_cols=74 Identities=19% Similarity=0.178 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 40 EIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 40 ~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
..++-.+++=.+ ...+|.++.-..+. ......|...|.. ++.++.....+...+...+.+.+++.+||++++-.
T Consensus 15 ~~~ll~~~~~~~--~~~~I~~vvs~~~~-~~~~~~a~~~gIp-~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~ 88 (200)
T PRK05647 15 LQAIIDACAAGQ--LPAEIVAVISDRPD-AYGLERAEAAGIP-TFVLDHKDFPSREAFDAALVEALDAYQPDLVVLAG 88 (200)
T ss_pred HHHHHHHHHcCC--CCcEEEEEEecCcc-chHHHHHHHcCCC-EEEECccccCchhHhHHHHHHHHHHhCcCEEEhHH
Confidence 344544433222 34566654433332 2355667788988 44444222234456667888889999999998743
No 228
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.90 E-value=1.9e+02 Score=24.73 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=49.7
Q ss_pred CCCHHhHHHHHHHHHhhhhCCCceEEEE--------eeCCch--hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHH
Q 025565 34 SMNPFCEIALEEALRIKESGLASEVVAV--------SMGPAQ--CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKS 103 (251)
Q Consensus 34 ~in~~d~~Ale~A~~lae~~~g~~V~al--------~~G~~~--~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~ 103 (251)
+=+|.|..++|.+-.-+ |.-.++ -+||++ .+..+...-.-++.++|+..++ ..+.++||.-|++
T Consensus 84 VE~~~Dv~aiE~~~~y~-----G~YhVL~G~iSPldgigp~~l~i~~L~~Ri~~~~v~EVIlAt~~-tvEGe~Ta~yi~~ 157 (195)
T TIGR00615 84 VEDPKDVFALEKTKEFR-----GRYHVLGGHISPLDGIGPEDLTIAALLKRLQEESVKEVILATNP-TVEGEATALYIAR 157 (195)
T ss_pred ECCHHHHHHHHhhCccc-----eEEEEccCccCccCCCChhhcCHHHHHHHHhcCCCcEEEEeCCC-CchHHHHHHHHHH
Confidence 45899999999864443 355555 567653 3444555555679999998854 6788999999999
Q ss_pred HHHHh
Q 025565 104 LVEVE 108 (251)
Q Consensus 104 ~ik~~ 108 (251)
.++..
T Consensus 158 ~lk~~ 162 (195)
T TIGR00615 158 LLQPF 162 (195)
T ss_pred Hhhhc
Confidence 99863
No 229
>PRK09186 flagellin modification protein A; Provisional
Probab=41.85 E-value=2.1e+02 Score=24.00 Aligned_cols=73 Identities=14% Similarity=-0.007 Sum_probs=43.9
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHH-HCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGL-AMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~l-a~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
....|.+|++. |.+|+.+.-.++..++..+++. .+|...+..+..| -.|+..+..++.++.++. .+|+++.-.
T Consensus 17 G~~~a~~l~~~--g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D-l~d~~~~~~~~~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 17 GSALVKAILEA--GGIVIAADIDKEALNELLESLGKEFKSKKLSLVELD-ITDQESLEEFLSKSAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHHHHHHHC--CCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEec-CCCHHHHHHHHHHHHHHcCCccEEEECC
Confidence 34567777775 6788777655544444444442 2355555444433 456777777777766654 479888654
No 230
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=41.80 E-value=1.2e+02 Score=25.75 Aligned_cols=81 Identities=16% Similarity=0.072 Sum_probs=52.1
Q ss_pred CCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcceeecCCcCcHHHHHH
Q 025565 54 LASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGKQAIDDDCNQTGQMVA 132 (251)
Q Consensus 54 ~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~~s~d~~~~~v~~~lA 132 (251)
+.++|+|+=--++..+-.-+.+-++|+|.+.++..+. |+ ++.+. .||.|++|.+ +.--.+--...
T Consensus 57 p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A---p~--------~L~~~~~~daiFIGGg---~~i~~ile~~~ 122 (187)
T COG2242 57 PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA---PE--------ALPDLPSPDAIFIGGG---GNIEEILEAAW 122 (187)
T ss_pred CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc---hH--------hhcCCCCCCEEEECCC---CCHHHHHHHHH
Confidence 5668888877766544455678889999999988542 22 23344 6999999985 22234555555
Q ss_pred HHcCC--CcccceeeEEE
Q 025565 133 GLLSW--PQGTFASKVVL 148 (251)
Q Consensus 133 ~~Lg~--p~vt~v~~l~~ 148 (251)
++|.- -++.++..++.
T Consensus 123 ~~l~~ggrlV~naitlE~ 140 (187)
T COG2242 123 ERLKPGGRLVANAITLET 140 (187)
T ss_pred HHcCcCCeEEEEeecHHH
Confidence 55444 46666666653
No 231
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=41.75 E-value=1.5e+02 Score=22.31 Aligned_cols=99 Identities=20% Similarity=0.184 Sum_probs=53.9
Q ss_pred CCHHhHHHHHHHHHhhhhCCCceEEEEeeCCch-------------------------hHHH----HHHHHHCCCCE-EE
Q 025565 35 MNPFCEIALEEALRIKESGLASEVVAVSMGPAQ-------------------------CVDT----LRTGLAMGADR-GV 84 (251)
Q Consensus 35 in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~-------------------------~~~~----l~~~la~GaD~-vi 84 (251)
-.+....+++.|..++.. .+..+..+.+.+.. ..+. .+.+...|.+. -.
T Consensus 15 ~s~~~~~a~~~a~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (154)
T COG0589 15 GSEAAEKALEEAVALAKR-LGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAEAAGVPVVET 93 (154)
T ss_pred CCHHHHHHHHHHHHHHHh-cCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHcCCCeeEE
Confidence 466778889999999887 56666544433211 0111 23355567764 22
Q ss_pred EEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCC----cCcHHHHHHHHcCCCc
Q 025565 85 HVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDD----CNQTGQMVAGLLSWPQ 139 (251)
Q Consensus 85 ~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~----~~~v~~~lA~~Lg~p~ 139 (251)
.+.. .++ ....|.....+.++|+|++|..-.++- -|.++-.+.....+|+
T Consensus 94 ~~~~---g~~--~~~~i~~~a~~~~adliV~G~~g~~~l~~~llGsvs~~v~~~~~~pV 147 (154)
T COG0589 94 EVVE---GSP--SAEEILELAEEEDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAPCPV 147 (154)
T ss_pred EEec---CCC--cHHHHHHHHHHhCCCEEEECCCCCccccceeeehhHHHHHhcCCCCE
Confidence 2221 112 124555566666999999999633332 2344445555555543
No 232
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=41.33 E-value=1.3e+02 Score=28.42 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=14.1
Q ss_pred HHHHHHHHhCCCEEEEcc
Q 025565 100 ILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 100 ~La~~ik~~~~dlIl~G~ 117 (251)
-+.+.+++.+||+++.|.
T Consensus 351 ~l~~~i~~~~pDllig~~ 368 (427)
T PRK02842 351 RQLDRIRALRPDLVVCGL 368 (427)
T ss_pred HHHHHHHHcCCCEEEccC
Confidence 445677888999999775
No 233
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=40.99 E-value=35 Score=30.59 Aligned_cols=105 Identities=15% Similarity=0.071 Sum_probs=58.2
Q ss_pred CCccCCCHHhHHHHHHHHHhhhhC--------CCceEEEEeeCCchhHHHHHHHHHCC--CCEEE-----EEeeCCCCCH
Q 025565 30 NVKMSMNPFCEIALEEALRIKESG--------LASEVVAVSMGPAQCVDTLRTGLAMG--ADRGV-----HVEAAGQLYP 94 (251)
Q Consensus 30 ~~~~~in~~d~~Ale~A~~lae~~--------~g~~V~al~~G~~~~~~~l~~~la~G--aD~vi-----~v~~~~~~d~ 94 (251)
.+++.|++ |..-+..+++-...+ .|+--..-.++.+.+++.+.++...= .+++. .++ +--.||
T Consensus 33 ~aks~ise-d~~i~~~~~~~~~~g~~~t~~ga~ggv~~~p~~~~~~~~~~~~~l~~~l~~~~rilpgg~~~~s-~ll~~P 110 (268)
T TIGR01743 33 SAKSSISE-DIVIIKETFEKFGIGKLLTVPGAAGGVKYIPKMSQAEAEEFVEELCQSLSEPERILPGGYLYLT-DILGKP 110 (268)
T ss_pred cccchhhh-hHHHHHHHHHhcCCceEEEeCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHHCCCcccCCeEEec-hhhcCH
Confidence 45667777 777777766543320 11112222344445566655544321 12221 222 212355
Q ss_pred H---HHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 95 L---TVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 95 ~---a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
. ..++.+|...+..++|.|++-.+ .|--+|..+|.+||.|++
T Consensus 111 ~~l~~ig~~la~~~~~~~iD~Vvgvet----kGIpLA~avA~~L~vp~v 155 (268)
T TIGR01743 111 SILSKIGKILASVFAEREIDAVMTVAT----KGIPLAYAVASVLNVPLV 155 (268)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEcc----chHHHHHHHHHHHCCCEE
Confidence 4 44455555555558999887664 345689999999999976
No 234
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=40.83 E-value=2.6e+02 Score=24.73 Aligned_cols=92 Identities=17% Similarity=0.146 Sum_probs=51.6
Q ss_pred HHHHHHhhhhCCCceEEEEe---eCC--chhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 43 LEEALRIKESGLASEVVAVS---MGP--AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 43 le~A~~lae~~~g~~V~al~---~G~--~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
+..+.+.+.. .|.+|..-. ++. +...+..+.+.++|+|++.+.+.-....|+.+.+.+..+-+..+..+-+=++
T Consensus 114 ~~~~i~~a~~-~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~i~~H~H 192 (262)
T cd07948 114 AVEVIEFVKS-KGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVSCDIEFHGH 192 (262)
T ss_pred HHHHHHHHHH-CCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 3334444444 465654432 222 2345566888899999887776444678998888887776554533333333
Q ss_pred eeecCCcCcHHHHHHH-HcCCC
Q 025565 118 QAIDDDCNQTGQMVAG-LLSWP 138 (251)
Q Consensus 118 ~s~d~~~~~v~~~lA~-~Lg~p 138 (251)
+..+-.++-.+++ ..|+-
T Consensus 193 ---n~~Gla~an~~~a~~aG~~ 211 (262)
T cd07948 193 ---NDTGCAIANAYAALEAGAT 211 (262)
T ss_pred ---CCCChHHHHHHHHHHhCCC
Confidence 3333345554443 44443
No 235
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=40.68 E-value=1.6e+02 Score=23.12 Aligned_cols=49 Identities=20% Similarity=0.069 Sum_probs=34.1
Q ss_pred HhHHHHHHHHHhhhhCCCceEEEEe--eCCchhHHHHHHHHHCCCCEEEEEe
Q 025565 38 FCEIALEEALRIKESGLASEVVAVS--MGPAQCVDTLRTGLAMGADRGVHVE 87 (251)
Q Consensus 38 ~d~~Ale~A~~lae~~~g~~V~al~--~G~~~~~~~l~~~la~GaD~vi~v~ 87 (251)
......+.|.++++. .+..|..-. +..++..+.++++.+.|+++++++.
T Consensus 15 ~~~~~~~la~~l~~~-~~~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVvP 65 (125)
T cd03415 15 FNEDMEEWAAYLERK-LGVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIAL 65 (125)
T ss_pred HHHHHHHHHHHHHhc-cCCceEEEEeecCCCCHHHHHHHHHHCCCCEEEEeh
Confidence 344455667777665 555554332 2455688999999999999999884
No 236
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=40.67 E-value=1.4e+02 Score=23.51 Aligned_cols=57 Identities=12% Similarity=-0.002 Sum_probs=29.4
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHH
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSL 104 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ 104 (251)
.-+...+|++++.+ .+. +.+|+.-..+..+++.++|+|+.|... .+...+...|.+.
T Consensus 70 ~~~~~~~L~~~g~~-~i~-vivGG~~~~~~~~~l~~~Gvd~~~~~g----t~~~~i~~~l~~~ 126 (132)
T TIGR00640 70 VPALRKELDKLGRP-DIL-VVVGGVIPPQDFDELKEMGVAEIFGPG----TPIPESAIFLLKK 126 (132)
T ss_pred HHHHHHHHHhcCCC-CCE-EEEeCCCChHhHHHHHHCCCCEEECCC----CCHHHHHHHHHHH
Confidence 33444445554222 333 444532223456667778888887743 2455555555543
No 237
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=40.49 E-value=52 Score=29.00 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccc
Q 025565 99 KILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTF 142 (251)
Q Consensus 99 ~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 142 (251)
+.+.+.+++.+||+|++ |..-++...|...|+|++.-
T Consensus 84 ~~~~~~l~~~~pDlVIs-------D~~~~~~~aa~~~giP~i~i 120 (318)
T PF13528_consen 84 RREIRWLREFRPDLVIS-------DFYPLAALAARRAGIPVIVI 120 (318)
T ss_pred HHHHHHHHhcCCCEEEE-------cChHHHHHHHHhcCCCEEEE
Confidence 34455677779999996 33457789999999998743
No 238
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=40.33 E-value=86 Score=24.49 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=24.5
Q ss_pred CCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEe
Q 025565 54 LASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVE 87 (251)
Q Consensus 54 ~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~ 87 (251)
.+.++..+-.|+ .+...+..+..+|+.+++++.
T Consensus 11 ~~~~vlviGaGg-~ar~v~~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 11 KGKRVLVIGAGG-AARAVAAALAALGAKEITIVN 43 (135)
T ss_dssp TTSEEEEESSSH-HHHHHHHHHHHTTSSEEEEEE
T ss_pred CCCEEEEECCHH-HHHHHHHHHHHcCCCEEEEEE
Confidence 355666665554 356678889999999999987
No 239
>PRK04527 argininosuccinate synthase; Provisional
Probab=40.32 E-value=1.3e+02 Score=28.52 Aligned_cols=91 Identities=11% Similarity=0.011 Sum_probs=54.5
Q ss_pred CceEEEEeeCCc-----hhHHHHHHHHHCCCCEEEEEeeCCCC------------------------CHHHHHHHHHHHH
Q 025565 55 ASEVVAVSMGPA-----QCVDTLRTGLAMGADRGVHVEAAGQL------------------------YPLTVAKILKSLV 105 (251)
Q Consensus 55 g~~V~al~~G~~-----~~~~~l~~~la~GaD~vi~v~~~~~~------------------------d~~a~a~~La~~i 105 (251)
|.+|+++++-.. +.+.+-+.|..+|+.+.+.++-...+ +-...+..|.+.+
T Consensus 26 G~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~~eef~e~vi~p~i~aNa~y~G~yPl~~~nR~~~~~~l~e~A 105 (400)
T PRK04527 26 GYAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEGFVKPLVWAGEGYQGQYPLLVSDRYLIVDAALKRA 105 (400)
T ss_pred CCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHHHHHHHHhcchhhcCCCCCccccHHHHHHHHHHHH
Confidence 668999888432 23445577888999776666532211 2234566788888
Q ss_pred HHhCCCEEEEcceeecC-CcCcHHHHHHHHcCCCcccceeeE
Q 025565 106 EVEKPGLIILGKQAIDD-DCNQTGQMVAGLLSWPQGTFASKV 146 (251)
Q Consensus 106 k~~~~dlIl~G~~s~d~-~~~~v~~~lA~~Lg~p~vt~v~~l 146 (251)
++.+++.|.-|.+..+. ..+.=++.-|.. ....++-..+.
T Consensus 106 ~~~G~~~IA~G~tgkgnDq~rfrpg~~Al~-el~ViaPlre~ 146 (400)
T PRK04527 106 EELGTRIIAHGCTGMGNDQVRFDLAVKALG-DYQIVAPIREI 146 (400)
T ss_pred HHCCCCEEEecCcCCCCchhhccHHHHHhh-cCCccchHHHh
Confidence 88899999999983221 222233333333 55555554444
No 240
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=40.27 E-value=2.4e+02 Score=25.90 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=43.6
Q ss_pred cCCccCCCHHhHHHHHHHHHhhhh-CCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeC
Q 025565 29 NNVKMSMNPFCEIALEEALRIKES-GLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAA 89 (251)
Q Consensus 29 ~~~~~~in~~d~~Ale~A~~lae~-~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~ 89 (251)
...|..|+-.+.+++++|++.... +..++...=++..+.-++.+.-+..||+.-++.+.-+
T Consensus 95 ~d~Pl~IDSt~p~a~eaaLk~~~e~G~~gR~IiNSIn~e~~~eel~llk~yg~aavIvLa~d 156 (308)
T PRK00979 95 TDLPFLIDSTSPEARIAAAKYATELGLADRAIYNSINPSIEEEEIEALKESDIKAAIVLAFD 156 (308)
T ss_pred CCCCEEEeCCCHHHHHHHHHHhhhcCCCCceEEEeccCCCCHHHHHHHHHhCCceEEEEEcC
Confidence 457889999999999999999754 1224666556665443456888889998867766533
No 241
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=40.11 E-value=1.8e+02 Score=27.33 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhhhCCCceEEEEeeCCc----hhHHHHHHHHHCCCCEEEEEee----------C-C-----CCCHHHHHH
Q 025565 40 EIALEEALRIKESGLASEVVAVSMGPA----QCVDTLRTGLAMGADRGVHVEA----------A-G-----QLYPLTVAK 99 (251)
Q Consensus 40 ~~Ale~A~~lae~~~g~~V~al~~G~~----~~~~~l~~~la~GaD~vi~v~~----------~-~-----~~d~~a~a~ 99 (251)
..-+..|++|+.+ . .|+..++|+- .....|.++-+.|+|--++-+- + + ..--+.|+.
T Consensus 69 ~~~ID~ai~La~~-~--~vi~~TfGDmlRVPGs~~SL~~ara~GadVriVYSpldAl~iA~~nP~k~vVF~avGFETTaP 145 (364)
T PRK15062 69 MGRIDAAIELASR-P--GVILCTFGDMLRVPGSKGSLLEAKAEGADVRIVYSPLDALKIARENPDKEVVFFAIGFETTAP 145 (364)
T ss_pred HHHHHHHHHHhCC-C--CeEEEeccccccCCCCcCCHHHHHhCCCCEEEEeCHHHHHHHHHHCCCCeEEEEecCchhccH
Confidence 3448889999975 3 5888899962 2356799999999995444441 1 1 012334444
Q ss_pred HHHHHHHH---hCCC--EEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 100 ILKSLVEV---EKPG--LIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 100 ~La~~ik~---~~~d--lIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
+.|..+++ .+++ .||+.+ +.++|-+...|+-|-.
T Consensus 146 ~~A~~i~~A~~~~~~Nfsvl~~h-------kl~PPa~~~ll~~~~~ 184 (364)
T PRK15062 146 ATAATLLQAKAEGLKNFSVLSSH-------KLVPPAMRALLEDPEL 184 (364)
T ss_pred HHHHHHHHHHHcCCCCEEEEEec-------cccHHHHHHHHcCCCC
Confidence 44444433 2332 334333 4599999999987753
No 242
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=39.98 E-value=37 Score=33.74 Aligned_cols=51 Identities=24% Similarity=0.296 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHH-hCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceee
Q 025565 93 YPLTVAKILKSLVEV-EKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASK 145 (251)
Q Consensus 93 d~~a~a~~La~~ik~-~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 145 (251)
++..+.++ ++++++ ..| +|++|......+...---++|++||+|+++....
T Consensus 210 ~~~~v~~~-~~~L~~AkrP-vI~~G~g~~~~~a~~~l~~lae~l~~pV~tt~~g 261 (616)
T PRK07418 210 NPRQINAA-LKLIEEAERP-LLYVGGGAISAGAHAELKELAERFQIPVTTTLMG 261 (616)
T ss_pred CHHHHHHH-HHHHHhCCCC-EEEECCCcCcccHHHHHHHHHHHHCCCEEEccCC
Confidence 45544444 444444 456 8888887754445566678999999999975544
No 243
>PRK06194 hypothetical protein; Provisional
Probab=39.82 E-value=2.5e+02 Score=24.20 Aligned_cols=73 Identities=14% Similarity=-0.016 Sum_probs=43.4
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcce
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGKQ 118 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~~ 118 (251)
..+.|.+|.++ |.+|+++.-..+..++...+....|. ++..+..| ..|...+..++.++.++. ++|+|+.-..
T Consensus 19 G~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D-~~d~~~~~~~~~~~~~~~g~id~vi~~Ag 92 (287)
T PRK06194 19 GLAFARIGAAL--GMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTD-VSDAAQVEALADAALERFGAVHLLFNNAG 92 (287)
T ss_pred HHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 34567777775 66777665543333344444444454 45555533 456777777777766665 5798876553
No 244
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=39.66 E-value=43 Score=27.50 Aligned_cols=44 Identities=14% Similarity=-0.121 Sum_probs=29.8
Q ss_pred CHHHH---HHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 93 YPLTV---AKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 93 d~~a~---a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
++..+ ++.+++.++..++|+|++..+ .+-.++..+|..||+|++
T Consensus 32 ~p~~~~~~~~~la~~~~~~~~d~Ivgv~~----~Gi~~a~~la~~l~~p~~ 78 (175)
T PRK02304 32 DPEAFREVIDALVERYKDADIDKIVGIEA----RGFIFGAALAYKLGIGFV 78 (175)
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEEcc----chHHHHHHHHHHhCCCEE
Confidence 55444 444444444446899887643 345699999999999986
No 245
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=39.47 E-value=58 Score=27.46 Aligned_cols=42 Identities=12% Similarity=0.055 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHh--CCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 95 LTVAKILKSLVEVE--KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 95 ~a~a~~La~~ik~~--~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
...+..+++.+++. ++|+|++.. ..+-.++..+|..|+.|++
T Consensus 48 ~~~~~~la~~i~~~~~~~d~Ivgi~----~gG~~~A~~la~~L~~~~~ 91 (202)
T PRK00455 48 ALLGRFLAEAIKDSGIEFDVVAGPA----TGGIPLAAAVARALDLPAI 91 (202)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEecc----cCcHHHHHHHHHHhCCCEE
Confidence 45566666666655 789877544 2456799999999999986
No 246
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=39.33 E-value=78 Score=29.32 Aligned_cols=6 Identities=0% Similarity=0.274 Sum_probs=4.9
Q ss_pred CCCEEE
Q 025565 109 KPGLII 114 (251)
Q Consensus 109 ~~dlIl 114 (251)
++|+||
T Consensus 225 ~~DvVl 230 (347)
T KOG1198|consen 225 GVDVVL 230 (347)
T ss_pred CccEEE
Confidence 688887
No 247
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=39.26 E-value=1.9e+02 Score=25.53 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=8.6
Q ss_pred cHHHHHHHHcCCCcccc
Q 025565 126 QTGQMVAGLLSWPQGTF 142 (251)
Q Consensus 126 ~v~~~lA~~Lg~p~vt~ 142 (251)
...-++...+|+|....
T Consensus 100 ~~~k~~l~~~gIp~p~~ 116 (304)
T PRK01372 100 LRTKLVWQAAGLPTPPW 116 (304)
T ss_pred HHHHHHHHHCCCCCCCE
Confidence 34445555555554433
No 248
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=38.70 E-value=1.5e+02 Score=26.46 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=14.9
Q ss_pred CCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 109 KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 109 ~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
+||+++.+-.-.++..++++. +.+.+|+|++
T Consensus 56 ~~d~vf~~lhG~~ge~~~i~~-~le~~gip~~ 86 (296)
T PRK14569 56 KPDKCFVALHGEDGENGRVSA-LLEMLEIKHT 86 (296)
T ss_pred CCCEEEEeCCCCCCCChHHHH-HHHHcCCCee
Confidence 566555544333333344433 4455566654
No 249
>PRK06139 short chain dehydrogenase; Provisional
Probab=38.67 E-value=2.7e+02 Score=25.17 Aligned_cols=73 Identities=11% Similarity=0.040 Sum_probs=45.2
Q ss_pred HHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 41 IALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
-..+.|.+++++ |.+|+.+.-..+..++..+++-+.|.+ +..+..| -.|.+.+.+++.++.+.. +.|+++.-.
T Consensus 19 IG~aia~~la~~--G~~Vvl~~R~~~~l~~~~~~~~~~g~~-~~~~~~D-v~d~~~v~~~~~~~~~~~g~iD~lVnnA 92 (330)
T PRK06139 19 IGQATAEAFARR--GARLVLAARDEEALQAVAEECRALGAE-VLVVPTD-VTDADQVKALATQAASFGGRIDVWVNNV 92 (330)
T ss_pred HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCc-EEEEEee-CCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 345677788875 678877665554444555666667875 3333323 456777766666665553 579887654
No 250
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=38.51 E-value=3.2e+02 Score=25.10 Aligned_cols=65 Identities=18% Similarity=0.186 Sum_probs=45.5
Q ss_pred eEE-EEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHH-hCCCEEEEcceeecCC
Q 025565 57 EVV-AVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEV-EKPGLIILGKQAIDDD 123 (251)
Q Consensus 57 ~V~-al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~-~~~dlIl~G~~s~d~~ 123 (251)
++. +=+||...---++..+++-|+|-+++=+. .++.+...+.+.+..++ .++-+|++.....+.+
T Consensus 163 r~~ivEvMGR~~G~LAl~~ala~~a~~iliPE~--~~~~~~l~~~v~~~~~~g~~~~vvvvsEG~~~~~ 229 (324)
T TIGR02483 163 RVMVVEVMGRHAGWIALHSGIAGGADVILIPEI--PFDIDSVCEKVRERFARGKRFAIVVVAEGAKPKG 229 (324)
T ss_pred CEEEEEEcCCChhHHHHHHHhccCCCEEEecCC--CCCHHHHHHHHHHHHHhCCCceEEEEecCccccc
Confidence 444 44889764344678888999998877442 56777777777776666 5788999987665433
No 251
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=38.38 E-value=1.1e+02 Score=24.10 Aligned_cols=52 Identities=23% Similarity=0.169 Sum_probs=39.7
Q ss_pred CCHHhHHHHHHHHHhhhhCCC--c-eEEEEee---C-----CchhHHHHHHHHHCCCCEEEEEe
Q 025565 35 MNPFCEIALEEALRIKESGLA--S-EVVAVSM---G-----PAQCVDTLRTGLAMGADRGVHVE 87 (251)
Q Consensus 35 in~~d~~Ale~A~~lae~~~g--~-~V~al~~---G-----~~~~~~~l~~~la~GaD~vi~v~ 87 (251)
=+||-.+..+.+..+++. .+ . .+..... | .+...+.++++.+.|+.+++++.
T Consensus 36 gd~Y~~~~~~~~~~v~~~-l~~~~~~~~~~fqS~~g~~~Wl~P~~~~~l~~l~~~G~~~i~v~p 98 (135)
T cd00419 36 GDPYPDQCEETARLVAER-LGLPFDEYELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVVVP 98 (135)
T ss_pred CCCHHHHHHHHHHHHHHH-hCCCCCCEEEEecCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEC
Confidence 478999999999999887 44 2 3444444 1 23578899999999999999986
No 252
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=38.35 E-value=2.3e+02 Score=23.51 Aligned_cols=97 Identities=11% Similarity=-0.042 Sum_probs=51.6
Q ss_pred ccCCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCc--hhHHHHHHHHHC--CCCEEEEEeeCCCCCHHHHHHHHHHHHHH
Q 025565 32 KMSMNPFCEIALEEALRIKESGLASEVVAVSMGPA--QCVDTLRTGLAM--GADRGVHVEAAGQLYPLTVAKILKSLVEV 107 (251)
Q Consensus 32 ~~~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~--~~~~~l~~~la~--GaD~vi~v~~~~~~d~~a~a~~La~~ik~ 107 (251)
+..++..|+ ...-++.+++ .+.+|. .+|.. .++.+.+.+.+. |.+ +.-. +..+++. -...+.+.|.+
T Consensus 28 ~~Rv~G~dl--~~~l~~~~~~-~~~~vf--llG~~~~v~~~~~~~l~~~yP~l~-i~g~--~g~f~~~-~~~~i~~~I~~ 98 (177)
T TIGR00696 28 QSRVAGPDL--MEELCQRAGK-EKLPIF--LYGGKPDVLQQLKVKLIKEYPKLK-IVGA--FGPLEPE-ERKAALAKIAR 98 (177)
T ss_pred CCccChHHH--HHHHHHHHHH-cCCeEE--EECCCHHHHHHHHHHHHHHCCCCE-EEEE--CCCCChH-HHHHHHHHHHH
Confidence 345566565 4444455554 354555 44553 233344444433 333 2222 3344443 33567788888
Q ss_pred hCCCEEEEcceeecCCcCcHHHHHHHHcCCCc
Q 025565 108 EKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQ 139 (251)
Q Consensus 108 ~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~ 139 (251)
.+||+|++|-.+--.+ ....+....++.++
T Consensus 99 s~~dil~VglG~PkQE--~~~~~~~~~~~~~v 128 (177)
T TIGR00696 99 SGAGIVFVGLGCPKQE--IWMRNHRHLKPDAV 128 (177)
T ss_pred cCCCEEEEEcCCcHhH--HHHHHhHHhCCCcE
Confidence 8999999998653322 34555555565443
No 253
>PRK13670 hypothetical protein; Provisional
Probab=38.29 E-value=2.1e+02 Score=27.03 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhhhhCCCceEEEEeeCC----c-----hhHHHHHHHHHCCCCEEEEEeeCC-CCCHHHHHHHHHHHHHHh
Q 025565 39 CEIALEEALRIKESGLASEVVAVSMGP----A-----QCVDTLRTGLAMGADRGVHVEAAG-QLYPLTVAKILKSLVEVE 108 (251)
Q Consensus 39 d~~Ale~A~~lae~~~g~~V~al~~G~----~-----~~~~~l~~~la~GaD~vi~v~~~~-~~d~~a~a~~La~~ik~~ 108 (251)
-.+.|+.|++++.. +..+.++ -|. . +-.+-.+.+..+|+|-++.+.-+- ...++.+++.--+.+++.
T Consensus 17 H~~~i~~a~~~a~~--~~~~~Vm-p~~f~qrg~p~i~~~~~R~~~a~~~GvD~vielpf~~a~~sae~F~~~aV~iL~~l 93 (388)
T PRK13670 17 HLYHLNQAKKLTNA--DVTIAVM-SGNFVQRGEPAIVDKWTRAKMALENGVDLVVELPFLYSVQSADFFAEGAVSILDAL 93 (388)
T ss_pred HHHHHHHHHHHHhC--CCcEEEe-cHHHhCCCCCCCCCHHHHHHHHHHcCCCEEEEeCCchHhCCHHHHHHhHHHHHHHc
Confidence 45778999998864 4333333 221 0 123346778999999999987431 346777776533455667
Q ss_pred CCCEEEEccee
Q 025565 109 KPGLIILGKQA 119 (251)
Q Consensus 109 ~~dlIl~G~~s 119 (251)
+.+.|++|..+
T Consensus 94 ~v~~lv~G~e~ 104 (388)
T PRK13670 94 GVDSLVFGSES 104 (388)
T ss_pred CCCEEEEcCCC
Confidence 89999999974
No 254
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=38.26 E-value=2.3e+02 Score=24.97 Aligned_cols=92 Identities=17% Similarity=0.103 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHH-HCCCCEEEEEeeCC--CCC-------H---HHHHHHHHHHHH
Q 025565 40 EIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGL-AMGADRGVHVEAAG--QLY-------P---LTVAKILKSLVE 106 (251)
Q Consensus 40 ~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~l-a~GaD~vi~v~~~~--~~d-------~---~a~a~~La~~ik 106 (251)
..+++.|..|.++ |.+|+.++.+.... .... ..|.+ ++.+.... ... . ......+.+.++
T Consensus 14 ~~~~~la~~l~~~--G~ev~v~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 86 (350)
T cd03785 14 FPALALAEELRER--GAEVLFLGTKRGLE----ARLVPKAGIP-LHTIPVGGLRRKGSLKKLKAPFKLLKGVLQARKILK 86 (350)
T ss_pred hHHHHHHHHHHhC--CCEEEEEECCCcch----hhcccccCCc-eEEEEecCcCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788888875 67898887765321 1112 23553 45554221 111 1 122334567788
Q ss_pred HhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccc
Q 025565 107 VEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTF 142 (251)
Q Consensus 107 ~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 142 (251)
+.+||+|++-.. ...-.+...|...+.|++..
T Consensus 87 ~~~pDvI~~~~~----~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 87 KFKPDVVVGFGG----YVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred hcCCCEEEECCC----CcchHHHHHHHHhCCCEEEE
Confidence 889999986331 11223445566678898743
No 255
>PRK07677 short chain dehydrogenase; Provisional
Probab=38.18 E-value=2.4e+02 Score=23.71 Aligned_cols=70 Identities=16% Similarity=0.084 Sum_probs=42.9
Q ss_pred HHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEc
Q 025565 43 LEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILG 116 (251)
Q Consensus 43 le~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G 116 (251)
...|.++++. |..|+++.-.+...++...++..++ +++..+..| -.|.....+.+.++.++. .+|.++.-
T Consensus 15 ~~ia~~l~~~--G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D-~~~~~~~~~~~~~~~~~~~~id~lI~~ 85 (252)
T PRK07677 15 KAMAKRFAEE--GANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMD-VRNPEDVQKMVEQIDEKFGRIDALINN 85 (252)
T ss_pred HHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEec-CCCHHHHHHHHHHHHHHhCCccEEEEC
Confidence 4566677764 6677776665543333333443444 455555543 457777778888777765 57988854
No 256
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=38.15 E-value=53 Score=25.20 Aligned_cols=54 Identities=13% Similarity=0.227 Sum_probs=28.1
Q ss_pred ceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcce
Q 025565 56 SEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQ 118 (251)
Q Consensus 56 ~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~ 118 (251)
.++..+++.+....+.++++.+.|+..+++... .....+.+.+++ .++-++|..
T Consensus 56 iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g-------~~~~~~~~~a~~--~gi~vigp~ 109 (116)
T PF13380_consen 56 IDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG-------AESEELIEAARE--AGIRVIGPN 109 (116)
T ss_dssp -SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT-------S--HHHHHHHHH--TT-EEEESS
T ss_pred CCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc-------hHHHHHHHHHHH--cCCEEEeCC
Confidence 356666666666677788888888887777653 222344444444 445555543
No 257
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=38.08 E-value=86 Score=28.50 Aligned_cols=73 Identities=14% Similarity=0.032 Sum_probs=50.0
Q ss_pred HHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeC-CCCCHHHHHHHHHHHHHHh-CCCEE
Q 025565 37 PFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAA-GQLYPLTVAKILKSLVEVE-KPGLI 113 (251)
Q Consensus 37 ~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~-~~~d~~a~a~~La~~ik~~-~~dlI 113 (251)
..|.+.|.+..+. ....|+-+..|+-..-+.++.++.+|||-+++.+.= ...||...++.+.++++.+ +|+++
T Consensus 189 ~~~~elL~ei~~~----~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~~~~~~~ 263 (293)
T PRK04180 189 QAPYELVKEVAEL----GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHYDDPEVL 263 (293)
T ss_pred CCCHHHHHHHHHh----CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 3455666665543 233555458887534567888999999999987621 1348999999999999886 46544
No 258
>PRK05867 short chain dehydrogenase; Provisional
Probab=38.06 E-value=2.5e+02 Score=23.71 Aligned_cols=73 Identities=14% Similarity=0.024 Sum_probs=43.8
Q ss_pred HHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 41 IALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
-..+.|.+|++. |.+|+.+.-..+..++...++-..|. ++..+..| ..|.......+.++.++. ..|+++...
T Consensus 21 IG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D-~~~~~~~~~~~~~~~~~~g~id~lv~~a 94 (253)
T PRK05867 21 IGKRVALAYVEA--GAQVAIAARHLDALEKLADEIGTSGG-KVVPVCCD-VSQHQQVTSMLDQVTAELGGIDIAVCNA 94 (253)
T ss_pred HHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEEcc-CCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 346677888875 66776655444333333344444553 45444433 456777777777776665 689887654
No 259
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=38.04 E-value=2.8e+02 Score=24.78 Aligned_cols=88 Identities=11% Similarity=0.049 Sum_probs=50.6
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeec
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAID 121 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d 121 (251)
+.-....|++..++.+++.++-. ...+.++.. -.+|+++..+..........-..+...+++.+||+++.-..+
T Consensus 16 ~~p~l~~Lk~~~P~a~I~~l~~~--~~~~l~~~~--p~id~v~~~~~~~~~~~~~~~~~~~~~lr~~~yD~vi~l~~~-- 89 (334)
T TIGR02195 16 AQSLYRLLKKRYPQAVIDVLAPA--WCRPLLERM--PEIRQAIDMPLGHGALELTERRRLGRSLREERYDQAIVLPNS-- 89 (334)
T ss_pred HHHHHHHHHHHCCCCEEEEEech--hhHHHHhcC--chhceeeecCCcccchhhhHHHHHHHHHhhcCCCEEEECCCC--
Confidence 34455667777788899987732 233343332 258999876532221112222345667788899999976432
Q ss_pred CCcCcHHHHHHHHcCCCc
Q 025565 122 DDCNQTGQMVAGLLSWPQ 139 (251)
Q Consensus 122 ~~~~~v~~~lA~~Lg~p~ 139 (251)
.-...++...+++.
T Consensus 90 ----~~s~ll~~~~~~~~ 103 (334)
T TIGR02195 90 ----LKSALIPFFAGIPH 103 (334)
T ss_pred ----HHHHHHHHHcCCCc
Confidence 23345555556654
No 260
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=37.84 E-value=1.9e+02 Score=27.47 Aligned_cols=89 Identities=22% Similarity=0.187 Sum_probs=56.1
Q ss_pred HHhhhhCCCceEEEEee--CCc--hhHHHHHHHHHCCCCEEEEEeeCC------------------C-------CCHHHH
Q 025565 47 LRIKESGLASEVVAVSM--GPA--QCVDTLRTGLAMGADRGVHVEAAG------------------Q-------LYPLTV 97 (251)
Q Consensus 47 ~~lae~~~g~~V~al~~--G~~--~~~~~l~~~la~GaD~vi~v~~~~------------------~-------~d~~a~ 97 (251)
..|+++ .+.+|+|+++ |.. +.+..-++|+..||.+.++++..+ + ..-..+
T Consensus 15 ~~L~e~-~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI~anA~Yeg~YpL~tsl~RplI 93 (388)
T PF00764_consen 15 KWLKEE-GGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAIKANALYEGRYPLSTSLARPLI 93 (388)
T ss_dssp HHHHHT-TTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHHHTT--BTTTB--CCCCHHHHH
T ss_pred HHHHhh-cCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHHHHHHHhCCCccccccchHHHH
Confidence 456776 4579998875 444 334555679999999999998310 0 123367
Q ss_pred HHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCC
Q 025565 98 AKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWP 138 (251)
Q Consensus 98 a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p 138 (251)
|+.+.+++++.+.++|.=|+|..+ +.|+=.-++.+.-.|
T Consensus 94 a~~~v~~A~~~ga~~vaHG~TgkG--NDqvRFe~~~~al~P 132 (388)
T PF00764_consen 94 AKKLVEVAREEGADAVAHGCTGKG--NDQVRFELSIRALAP 132 (388)
T ss_dssp HHHHHHHHHHHT-SEEE----TTS--SHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCCeEEeccCCcCC--CchhHHHHHHHHhCc
Confidence 888889999999999998887544 457777777664333
No 261
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=37.65 E-value=75 Score=27.75 Aligned_cols=43 Identities=21% Similarity=0.096 Sum_probs=26.1
Q ss_pred HHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEccee
Q 025565 71 TLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQA 119 (251)
Q Consensus 71 ~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s 119 (251)
.++.+.+.|+|-++++.+-.... ...||+.+ -+.|+||.|++-
T Consensus 163 ~v~~~~~~~~D~iVvl~H~g~~~----d~~la~~~--~~iD~IlgGH~H 205 (257)
T cd07406 163 LVDELREQGADLIIALTHMRLPN----DKRLAREV--PEIDLILGGHDH 205 (257)
T ss_pred HHHHHHhCCCCEEEEEeccCchh----hHHHHHhC--CCCceEEecccc
Confidence 34455678899999988542211 12333332 378999988854
No 262
>PRK07206 hypothetical protein; Provisional
Probab=37.54 E-value=2.2e+02 Score=26.32 Aligned_cols=40 Identities=18% Similarity=0.133 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccc
Q 025565 99 KILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTF 142 (251)
Q Consensus 99 ~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 142 (251)
..+.+.+++.++|.|+.|.. ..-.++.++++.|+.|+..+
T Consensus 60 ~~l~~~~~~~~~d~vi~~~e----~~~~~~a~l~~~l~l~~~~~ 99 (416)
T PRK07206 60 DDLVEFLRKLGPEAIIAGAE----SGVELADRLAEILTPQYSND 99 (416)
T ss_pred HHHHHHHHHcCCCEEEECCC----ccHHHHHHHHHhcCCCcCCC
Confidence 36667788889999999853 23457788899999885433
No 263
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=37.49 E-value=1.1e+02 Score=28.27 Aligned_cols=62 Identities=13% Similarity=0.034 Sum_probs=43.4
Q ss_pred HCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-----CCCEEEEcceeecCCcCcHHHHHHHHcCCCc
Q 025565 77 AMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-----KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQ 139 (251)
Q Consensus 77 a~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-----~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~ 139 (251)
..|..+-++..++ ....+--+++..+++++. +.|+|+++.++.|...-..+.+++.+||.+.
T Consensus 45 ~~Gi~~R~~~~~~-e~~~~la~~Aa~~aL~~a~~~~~dId~lI~~t~t~d~~~P~~a~~v~~~Lg~~~ 111 (353)
T PRK12880 45 VIGLNTRYICDEN-TCVSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACYLHQLLNLSS 111 (353)
T ss_pred ccCceEEEeCCCC-CCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCCcHHHHHHHHhCCCC
Confidence 3688887776533 222333344444555543 4699999999988888999999999999863
No 264
>PLN02735 carbamoyl-phosphate synthase
Probab=37.31 E-value=72 Score=34.36 Aligned_cols=70 Identities=13% Similarity=0.213 Sum_probs=47.4
Q ss_pred ccCCC---HHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHC-CCCEEEEEeeCCCCCHHHHHHHHHHHHHH
Q 025565 32 KMSMN---PFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAM-GADRGVHVEAAGQLYPLTVAKILKSLVEV 107 (251)
Q Consensus 32 ~~~in---~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~-GaD~vi~v~~~~~~d~~a~a~~La~~ik~ 107 (251)
+..|. .||.+++..+..|++. |.+++++-..|+.... .+ =+|+.|... .+...+.+++++
T Consensus 584 ~~~igq~iefd~~~v~~~~alr~~--G~~tI~v~~npetvst------d~~~aD~~y~~p--------l~~e~vl~i~~~ 647 (1102)
T PLN02735 584 PNRIGQGIEFDYCCCHASFALQDA--GYETIMMNSNPETVST------DYDTSDRLYFEP--------LTVEDVLNVIDL 647 (1102)
T ss_pred ccccCcccccceeHHHHHHHHHHc--CCeEEEEeCCCccccC------CcccCCeEEEEe--------CCHHHHHHHHHH
Confidence 44455 6888888888888874 7788877777653111 11 168888763 124577788999
Q ss_pred hCCCEEEEcc
Q 025565 108 EKPGLIILGK 117 (251)
Q Consensus 108 ~~~dlIl~G~ 117 (251)
+++|.|+.+-
T Consensus 648 e~~d~Vi~~~ 657 (1102)
T PLN02735 648 ERPDGIIVQF 657 (1102)
T ss_pred hCCCEEEECC
Confidence 9999999643
No 265
>PRK07478 short chain dehydrogenase; Provisional
Probab=37.25 E-value=2.5e+02 Score=23.60 Aligned_cols=72 Identities=13% Similarity=-0.002 Sum_probs=44.7
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
..+.|.+|++. |.+|+.+.-.++..++...+....|.+ +..+..| ..++......+.++.++. .+|.++...
T Consensus 19 G~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~D-~~~~~~~~~~~~~~~~~~~~id~li~~a 91 (254)
T PRK07478 19 GRAAAKLFARE--GAKVVVGARRQAELDQLVAEIRAEGGE-AVALAGD-VRDEAYAKALVALAVERFGGLDIAFNNA 91 (254)
T ss_pred HHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCc-EEEEEcC-CCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 34567777775 667777655544444445555556654 4444433 457777777777777765 589887655
No 266
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=37.18 E-value=1.2e+02 Score=25.57 Aligned_cols=90 Identities=18% Similarity=0.182 Sum_probs=53.0
Q ss_pred HHHHHHHHhhhhCCCceEEEEeeCCc-----hhHHHHHHHHHCCC-------CEEEEEeeCC-CCCH---HHHHHHHHHH
Q 025565 41 IALEEALRIKESGLASEVVAVSMGPA-----QCVDTLRTGLAMGA-------DRGVHVEAAG-QLYP---LTVAKILKSL 104 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~~G~~-----~~~~~l~~~la~Ga-------D~vi~v~~~~-~~d~---~a~a~~La~~ 104 (251)
+.++.|++|++++. +-|.- -..+.+..++..+- ..-++++-.. ..++ ..+++.+++.
T Consensus 6 ~l~~~a~~l~~~~~-------~~~~ia~el~vs~~t~~~l~~~~~~~~~~~~~~~~yid~~~~~~~~~~l~~i~~~la~~ 78 (200)
T PRK02277 6 ELIEKAAELKNKGL-------STGEIADELNVSRETATWLLTRAKKLEKAPAPKDIHIDWSSIGSSSSRLRYIASAMADM 78 (200)
T ss_pred HHHHHHHHHHHcCC-------ChhhhhhhhcchHHHHHHHHhcccCCCCCCCCCCEEEEChhhccCHHHHHHHHHHHHHH
Confidence 56999999998632 22221 01234444443332 2244443222 3355 4667777777
Q ss_pred HHH--hCCCEEEEcceeecCCcCcHHHHHHHHcCCCccc
Q 025565 105 VEV--EKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGT 141 (251)
Q Consensus 105 ik~--~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 141 (251)
+.. .++|+|+.-.. .|-.++..+|..|+.|+..
T Consensus 79 i~~~~~~~D~Ivgi~~----gG~~~A~~lA~~L~~~~~~ 113 (200)
T PRK02277 79 LEKEDEEVDVVVGIAK----SGVPLATLVADELGKDLAI 113 (200)
T ss_pred HHhcCCCCCEEEeecc----CCHHHHHHHHHHhCCCcEE
Confidence 643 47899875443 4557999999999998753
No 267
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=37.17 E-value=1.6e+02 Score=30.84 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=54.9
Q ss_pred CHHhHHHHHHHHHhhhhCCCceEEEEeeCCch-------hHH----HHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHH
Q 025565 36 NPFCEIALEEALRIKESGLASEVVAVSMGPAQ-------CVD----TLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSL 104 (251)
Q Consensus 36 n~~d~~Ale~A~~lae~~~g~~V~al~~G~~~-------~~~----~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ 104 (251)
+|.++..+-.|.|+|++ .+.+-+|+.+-.+. ... .++-|-..|+.-+.+.. ...+++|++.
T Consensus 258 ~~~~e~liR~a~RlA~~-~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~~l~~-------~dv~~~i~~y 329 (890)
T COG2205 258 SPGSEKLIRRAARLASR-LHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVTLYG-------GDVAKAIARY 329 (890)
T ss_pred CCchHHHHHHHHHHHHH-hCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEEEEeC-------CcHHHHHHHH
Confidence 56688889999999998 67788888554432 112 23334467876554433 2457889999
Q ss_pred HHHhCCCEEEEcceeecC
Q 025565 105 VEVEKPGLIILGKQAIDD 122 (251)
Q Consensus 105 ik~~~~dlIl~G~~s~d~ 122 (251)
++..+..-|++|.+...+
T Consensus 330 a~~~~~TkiViG~~~~~r 347 (890)
T COG2205 330 AREHNATKIVIGRSRRSR 347 (890)
T ss_pred HHHcCCeeEEeCCCcchH
Confidence 999999999999876443
No 268
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=37.01 E-value=43 Score=32.99 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHHH-hCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceee
Q 025565 93 YPLTVAKILKSLVEV-EKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASK 145 (251)
Q Consensus 93 d~~a~a~~La~~ik~-~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 145 (251)
++....++ ++.+.+ ..| +|++|..........---+||+++|+|+++.-.+
T Consensus 200 ~~~~~~~~-~~~L~~A~rP-vIl~G~g~~~~~a~~~l~~lae~~~~PV~tt~~~ 251 (570)
T PRK06725 200 DSMKLREV-AKAISKAKRP-LLYIGGGVIHSGGSEELIEFARENRIPVVSTLMG 251 (570)
T ss_pred CHHHHHHH-HHHHHcCCCc-EEEECCCccccchHHHHHHHHHHhCCCEEECCcc
Confidence 44444443 344443 456 8888887654444566678999999999865433
No 269
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=36.74 E-value=1.9e+02 Score=22.07 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=31.7
Q ss_pred HHHHHHhhhhCCCceEEE--EeeCCchhHHHHHHHHHCCCCEEEEEe
Q 025565 43 LEEALRIKESGLASEVVA--VSMGPAQCVDTLRTGLAMGADRGVHVE 87 (251)
Q Consensus 43 le~A~~lae~~~g~~V~a--l~~G~~~~~~~l~~~la~GaD~vi~v~ 87 (251)
-+.+.+++++..+..|.. +..+.++.++.++++.+.|+++++++.
T Consensus 21 ~~~~~~l~~~~~~~~v~~afle~~~P~l~~~l~~l~~~g~~~v~vvP 67 (126)
T PRK00923 21 TKIAEKIKEKHPFYIVEVGFMEFNEPTIPEALKKLIGTGADKIIVVP 67 (126)
T ss_pred HHHHHHHHHhCCCCeEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 445555666533445543 335677789999999999999999986
No 270
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=36.37 E-value=47 Score=32.56 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeE
Q 025565 93 YPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKV 146 (251)
Q Consensus 93 d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l 146 (251)
++..+..+...+.+...| +|++|......+..+.--++|++||+|+++....-
T Consensus 189 ~~~~i~~~~~~L~~A~rP-viv~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~k 241 (563)
T PRK08527 189 NSRQIKKAAEAIKEAKKP-LFYLGGGAILSNASEEIRELVKKTGIPAVETLMAR 241 (563)
T ss_pred CHHHHHHHHHHHHcCCCC-EEEECCCccccchHHHHHHHHHHHCCCEEEccccC
Confidence 455444444333333456 77888776544556777899999999998766543
No 271
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=36.30 E-value=1.4e+02 Score=26.77 Aligned_cols=61 Identities=11% Similarity=0.018 Sum_probs=34.8
Q ss_pred HCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-----CCCEEEEcceeecCCcCcHHHHHHHHcCCC
Q 025565 77 AMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-----KPGLIILGKQAIDDDCNQTGQMVAGLLSWP 138 (251)
Q Consensus 77 a~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-----~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p 138 (251)
..|..+..+...+ ...++--+.+..+++++. +.|+|+++.++.|......+.+++.+||.+
T Consensus 37 ~~Gi~~r~~~~~~-e~~~~la~~Aa~~aL~~ag~~~~~Id~li~~t~~~d~~~p~~a~~v~~~Lg~~ 102 (326)
T PRK05963 37 RTGIRCRRWAAPD-ETLSDLAASAGDMALSDAGIERSDIALTLLATSTPDHLLPPSAPLLAHRLGLQ 102 (326)
T ss_pred ccCCeEEEEcCCC-CCHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCcHHHHHHHHhCCC
Confidence 3467666665422 222222333333444442 357888777776655566777888888875
No 272
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=36.16 E-value=1.3e+02 Score=23.41 Aligned_cols=21 Identities=5% Similarity=-0.046 Sum_probs=15.2
Q ss_pred HHHHHHHHHCCCCEEEEEeeC
Q 025565 69 VDTLRTGLAMGADRGVHVEAA 89 (251)
Q Consensus 69 ~~~l~~~la~GaD~vi~v~~~ 89 (251)
.+.++.+...|..++.++++|
T Consensus 12 s~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 12 SEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred HHHHHHHHHCCCCEEEEEcCC
Confidence 456777777888888877754
No 273
>PRK00549 competence damage-inducible protein A; Provisional
Probab=36.15 E-value=3.8e+02 Score=25.39 Aligned_cols=68 Identities=18% Similarity=0.026 Sum_probs=37.6
Q ss_pred HHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCccccee
Q 025565 73 RTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFAS 144 (251)
Q Consensus 73 ~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~ 144 (251)
+.+-.+|.+-.....- .-|.+.+.++|.++. .++|+|++.....-+..-.+..-+|..+|.++.-+-.
T Consensus 27 ~~L~~~G~~v~~~~~v--~Dd~~~I~~~l~~a~--~~~DlVItTGGlGpt~dD~t~ea~a~~~g~~l~~~~~ 94 (414)
T PRK00549 27 EKLAELGIDVYHQTVV--GDNPERLLSALEIAE--ERSDLIITTGGLGPTKDDLTKETVAKFLGRELVLDEE 94 (414)
T ss_pred HHHHHCCCeEEEEEEe--CCCHHHHHHHHHHhc--cCCCEEEECCCCCCCCCccHHHHHHHHhCCCCcCCHH
Confidence 4456678754332221 114566666666543 3678776654443333344566667778888775433
No 274
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=36.04 E-value=64 Score=28.51 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccce
Q 025565 93 YPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFA 143 (251)
Q Consensus 93 d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 143 (251)
....+|++++++++.++|+++|+|-. +..-...|..+|++++..+
T Consensus 119 ~d~~lA~~i~~ai~~~~~~l~l~~~a------gs~~~~~A~~~Gl~~~~E~ 163 (242)
T PF03746_consen 119 KDEELARAIAEAIKAFDPDLPLYGLA------GSELEKAAKELGLPVVFEA 163 (242)
T ss_dssp H-HHHHHHHHHHHHHH-TT-EEEEET------TSHHHHHHHHCT--EEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCcEEEEcC------CcHHHHHHHHCCCcEEEEE
Confidence 45688999999999999999998864 3477889999999887544
No 275
>PRK13947 shikimate kinase; Provisional
Probab=35.97 E-value=23 Score=28.37 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=23.5
Q ss_pred CEEEEcceeecCCcCcHHHHHHHHcCCCccc
Q 025565 111 GLIILGKQAIDDDCNQTGQMVAGLLSWPQGT 141 (251)
Q Consensus 111 dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 141 (251)
.++|+|...+|+ ..++-+||.+||++++.
T Consensus 3 ~I~l~G~~GsGK--st~a~~La~~lg~~~id 31 (171)
T PRK13947 3 NIVLIGFMGTGK--TTVGKRVATTLSFGFID 31 (171)
T ss_pred eEEEEcCCCCCH--HHHHHHHHHHhCCCEEE
Confidence 478888776665 47999999999999873
No 276
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=35.91 E-value=2.4e+02 Score=22.97 Aligned_cols=84 Identities=13% Similarity=0.021 Sum_probs=50.0
Q ss_pred HHhHHHHHHHHHhhhhCCCceEEEEeeCC----ch---hHHHHHHHHHCCCCEEEEEeeC---CCCCHHHHHH-----HH
Q 025565 37 PFCEIALEEALRIKESGLASEVVAVSMGP----AQ---CVDTLRTGLAMGADRGVHVEAA---GQLYPLTVAK-----IL 101 (251)
Q Consensus 37 ~~d~~Ale~A~~lae~~~g~~V~al~~G~----~~---~~~~l~~~la~GaD~vi~v~~~---~~~d~~a~a~-----~L 101 (251)
..+..++....+++.. .+.++.++.+.. .+ ++...+-|-.+|..-.+.-.+. .....+..|+ .|
T Consensus 10 ~DS~~Ll~~l~~~~~~-~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l 88 (182)
T PF01171_consen 10 KDSMALLHLLKELRRR-NGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDEDRKKGSNIEECARELRYQFL 88 (182)
T ss_dssp HHHHHHHHHHHHHHTT-TTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-cCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeeeeecccCCHHHHHHHHHHHHH
Confidence 4566677777788776 567898888653 22 1223345677887765554432 1334555565 56
Q ss_pred HHHHHHhCCCEEEEcceeec
Q 025565 102 KSLVEVEKPGLIILGKQAID 121 (251)
Q Consensus 102 a~~ik~~~~dlIl~G~~s~d 121 (251)
.+.+++.+++.|++|++..|
T Consensus 89 ~~~a~~~g~~~i~~GHh~dD 108 (182)
T PF01171_consen 89 REIAKEEGCNKIALGHHLDD 108 (182)
T ss_dssp HHHHHTTT-CEEE---BHHH
T ss_pred HHhhhcccccceeecCcCCc
Confidence 67788889999999999877
No 277
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=35.79 E-value=3.3e+02 Score=25.65 Aligned_cols=81 Identities=15% Similarity=0.049 Sum_probs=46.0
Q ss_pred CceEEEEeeCCchhHHHHHHHHHCC-CCEEEEEe--eCCCCC-----HHHH-------------------HHHHHHHHHH
Q 025565 55 ASEVVAVSMGPAQCVDTLRTGLAMG-ADRGVHVE--AAGQLY-----PLTV-------------------AKILKSLVEV 107 (251)
Q Consensus 55 g~~V~al~~G~~~~~~~l~~~la~G-aD~vi~v~--~~~~~d-----~~a~-------------------a~~La~~ik~ 107 (251)
.++=.++..|+..+-..++-+..+| ..-+.... ++..++ .+.. ...+.+.+++
T Consensus 292 ~Gk~~~i~~~~~~~~~~~~~l~elG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 371 (426)
T cd01972 292 KGKKAIVETGAAYGHLLIAVLRELGFGEVPVVLVFHHDPTYDRGDSEKDLLEHGVDPEIDITKYTVSNGQYYQFYNLLKR 371 (426)
T ss_pred CCCEEEEEeCCccHHHHHHHHHHcCCceEEEEEeccCchhhhcchhHHHHhcCCcccccccceeeecCCCHHHHHHHHHH
Confidence 3443466677766666677777888 54443322 111000 0011 1357788889
Q ss_pred hCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccc
Q 025565 108 EKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTF 142 (251)
Q Consensus 108 ~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 142 (251)
.+||+++.+... .-...|.++|+|++..
T Consensus 372 ~~pDl~i~~~~~-------~~~~~~~~~gip~~~~ 399 (426)
T cd01972 372 VKPDFIIFRHGG-------LFPDATVYLGIPVVPL 399 (426)
T ss_pred hCCCEEEEcCCC-------ccHHHHHhcCCCEEec
Confidence 999988865422 2334457799998743
No 278
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=35.67 E-value=53 Score=27.63 Aligned_cols=60 Identities=8% Similarity=-0.053 Sum_probs=40.7
Q ss_pred HCCCCEEEEEeeCC-CCCHH---HHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 77 AMGADRGVHVEAAG-QLYPL---TVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 77 a~GaD~vi~v~~~~-~~d~~---a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
+-|...-+.++... ..+|. .++..+++.++..++|.|+..... +--++..+|..||.|++
T Consensus 37 ~SG~~s~~yiD~~~~~~~p~~~~~i~~~la~~~~~~~~d~I~g~~~~----GiplA~~vA~~l~~p~v 100 (187)
T PRK13810 37 SSGKKSKYYIDIKKASTDPKTLKLIARQAALRIKEMDVDTVAGVELG----GVPLATAVSLETGLPLL 100 (187)
T ss_pred cCCCcCCEEEECchhcCCHHHHHHHHHHHHHHhccCCCCEEEEEccc----hHHHHHHHHHHhCCCEE
Confidence 33666667766432 23444 456667777766689998876643 34589999999999976
No 279
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=35.63 E-value=2.2e+02 Score=27.27 Aligned_cols=72 Identities=22% Similarity=0.202 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 39 CEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 39 d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
.+.++...+.+++ .|.+++++.--+.. ... +..+ +|+.+.+..+.....+.-...|.+++++.++|.|+.|.
T Consensus 14 geia~~ii~aa~~--lG~~~v~~~s~~d~--~~~--~~~~-aD~~~~i~p~~~~~~y~d~~~i~~~a~~~~~daI~pg~ 85 (467)
T PRK12833 14 GEIAVRIIRAARE--LGMRTVAACSDADR--DSL--AARM-ADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIHPGY 85 (467)
T ss_pred cHHHHHHHHHHHH--cCCeEEEEECCCCC--CCh--hHHh-CCEEEecCCCCccccccCHHHHHHHHHHhCCCEEEECC
Confidence 4456666666666 47777766432211 111 1122 79999875321111111124677788888999998765
No 280
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=35.41 E-value=76 Score=28.16 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=27.2
Q ss_pred HHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEccee
Q 025565 69 VDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQA 119 (251)
Q Consensus 69 ~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s 119 (251)
.+.++++-+.|+|-+|++.+-. .+. -..||+.+ -+.|+|+.|++=
T Consensus 172 ~~~v~~lr~~~~D~II~l~H~G-~~~---d~~la~~~--~giD~IiggH~H 216 (281)
T cd07409 172 QKEADKLKAQGVNKIIALSHSG-YEV---DKEIARKV--PGVDVIVGGHSH 216 (281)
T ss_pred HHHHHHHHhcCCCEEEEEeccC-chh---HHHHHHcC--CCCcEEEeCCcC
Confidence 3445555566899999887532 211 23344333 378999998854
No 281
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=35.35 E-value=1.3e+02 Score=27.55 Aligned_cols=81 Identities=23% Similarity=0.252 Sum_probs=47.5
Q ss_pred CHHhHHHHHHHHHhhhhCCC-----ceE-EEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCC---CCHHHHHHHHHHHHH
Q 025565 36 NPFCEIALEEALRIKESGLA-----SEV-VAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQ---LYPLTVAKILKSLVE 106 (251)
Q Consensus 36 n~~d~~Ale~A~~lae~~~g-----~~V-~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~---~d~~a~a~~La~~ik 106 (251)
+|.-...-..|.+|.+. .+ .+| .|...|++..+++++++.+.|+|+++++.--.. ..+-.+-+.+.++++
T Consensus 65 SPL~~~t~~qa~~l~~~-L~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~~~~~~~~~~ 143 (316)
T PF00762_consen 65 SPLNEITRRQAEALQQR-LDERGVDVEVYYAMRYGPPSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSYLDEVERALK 143 (316)
T ss_dssp CCHHHHHHHHHHHHHHH-HHHH-EEEEEEEEESSSSSBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHH-HHhcCCCeeEEEEeccCCCCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHHHHHHHHHHH
Confidence 34444444555555544 32 233 477889999999999999999999999984322 234444444445554
Q ss_pred Hh--CCCEEEEcc
Q 025565 107 VE--KPGLIILGK 117 (251)
Q Consensus 107 ~~--~~dlIl~G~ 117 (251)
+. .+.+-++..
T Consensus 144 ~~~~~~~~~~i~~ 156 (316)
T PF00762_consen 144 KSRPNPKVRFIPS 156 (316)
T ss_dssp HTHSSSEEEEE--
T ss_pred hcCCCCeEEEeCC
Confidence 42 355555444
No 282
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=35.33 E-value=1.7e+02 Score=27.19 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=34.9
Q ss_pred EEEEeeCCch-hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHH-HhCCCEEEEcce
Q 025565 58 VVAVSMGPAQ-CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVE-VEKPGLIILGKQ 118 (251)
Q Consensus 58 V~al~~G~~~-~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik-~~~~dlIl~G~~ 118 (251)
-.++.+|..+ ++-.++.+.+.|+.++++.. +.+....+...-++.+. ...+|+|+++.+
T Consensus 175 k~vLvIGaGem~~l~a~~L~~~g~~~i~v~n--Rt~~~~~~~~~~~~~~~~~~~~DvVIs~t~ 235 (338)
T PRK00676 175 ASLLFIGYSEINRKVAYYLQRQGYSRITFCS--RQQLTLPYRTVVREELSFQDPYDVIFFGSS 235 (338)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCCCEEEEEc--CCccccchhhhhhhhhhcccCCCEEEEcCC
Confidence 3566666544 45577888899999888876 23222223222222222 137999998754
No 283
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=35.20 E-value=2.3e+02 Score=24.17 Aligned_cols=75 Identities=11% Similarity=-0.059 Sum_probs=41.6
Q ss_pred hHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 39 CEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 39 d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
.+++|-.+.+=.+ .+.+|.++.-..+. ...++.|..+|..-. ..+.....+.......+.+.+++.+||+|++-+
T Consensus 12 n~~al~~~~~~~~--l~~~i~~visn~~~-~~~~~~A~~~gIp~~-~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~ag 86 (207)
T PLN02331 12 NFRAIHDACLDGR--VNGDVVVVVTNKPG-CGGAEYARENGIPVL-VYPKTKGEPDGLSPDELVDALRGAGVDFVLLAG 86 (207)
T ss_pred hHHHHHHHHHcCC--CCeEEEEEEEeCCC-ChHHHHHHHhCCCEE-EeccccCCCcccchHHHHHHHHhcCCCEEEEeC
Confidence 4455545433332 34566655555443 456788899999853 333111111112223556668888999999855
No 284
>PRK07102 short chain dehydrogenase; Provisional
Probab=35.14 E-value=2.7e+02 Score=23.27 Aligned_cols=71 Identities=18% Similarity=0.082 Sum_probs=41.8
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
....+.+|.++ |.+|+++.-.++..++...+....+-.++..+..| -.|...+.+.+.++.+ .+|+++...
T Consensus 14 G~~~a~~l~~~--G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~~~~~~~~~--~~d~vv~~a 84 (243)
T PRK07102 14 ARACARRYAAA--GARLYLAARDVERLERLADDLRARGAVAVSTHELD-ILDTASHAAFLDSLPA--LPDIVLIAV 84 (243)
T ss_pred HHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecC-CCChHHHHHHHHHHhh--cCCEEEECC
Confidence 35667778775 67888877666544444444444455566666543 3455555555555443 468888643
No 285
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=35.05 E-value=93 Score=26.97 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=29.7
Q ss_pred HHHCCCCEEEEEeeCCCCC---HHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 75 GLAMGADRGVHVEAAGQLY---PLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 75 ~la~GaD~vi~v~~~~~~d---~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
+.+.....-+++.....+. ...=+.++++++++.+|.+++||+
T Consensus 142 ~~~~~~~~~VLv~H~PP~g~g~~h~GS~alr~~I~~~~P~l~i~GH 187 (224)
T cd07388 142 LWELKDYRKVFLFHTPPYHKGLNEQGSHEVAHLIKTHNPLVVLVGG 187 (224)
T ss_pred HHhCCCCCeEEEECCCCCCCCCCccCHHHHHHHHHHhCCCEEEEcC
Confidence 3344455667776543222 245578999999999999999994
No 286
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=35.01 E-value=1.5e+02 Score=27.82 Aligned_cols=93 Identities=15% Similarity=0.047 Sum_probs=53.2
Q ss_pred HhHHHHHHHHHhhhhCCCceEEEE-eeCCchhHHHHHHH-HHCCCCEEEEEeeCC--CC-------CHHH-HHHHHH---
Q 025565 38 FCEIALEEALRIKESGLASEVVAV-SMGPAQCVDTLRTG-LAMGADRGVHVEAAG--QL-------YPLT-VAKILK--- 102 (251)
Q Consensus 38 ~d~~Ale~A~~lae~~~g~~V~al-~~G~~~~~~~l~~~-la~GaD~vi~v~~~~--~~-------d~~a-~a~~La--- 102 (251)
-|..|+..|.+|++..+|.+|.|+ .+|....-+ +.. -.+| ....+.... .+ |... ....+-
T Consensus 9 ed~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e--~~~ip~~g--~~~~~~sgg~~~~~~~~~~~~~~~gl~~~~~~~~ 84 (396)
T TIGR03492 9 EDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQ--NLGIPIIG--PTKELPSGGFSYQSLRGLLRDLRAGLVGLTLGQW 84 (396)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHh--hCCCceeC--CCCCCCCCCccCCCHHHHHHHHHhhHHHHHHHHH
Confidence 388889999999875457777766 667653211 111 1234 233333211 12 2222 222221
Q ss_pred HHHHHh--CCCEEEEcceeecCCcCcHHHHHHHHcCCCccc
Q 025565 103 SLVEVE--KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGT 141 (251)
Q Consensus 103 ~~ik~~--~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 141 (251)
.++++. +||+|+. -|+-++...|..+|.|++-
T Consensus 85 ~~~~~~~~~p~~v~~-------~Gg~v~~~aA~~~~~p~~~ 118 (396)
T TIGR03492 85 RALRKWAKKGDLIVA-------VGDIVPLLFAWLSGKPYAF 118 (396)
T ss_pred HHHHHHhhcCCEEEE-------ECcHHHHHHHHHcCCCceE
Confidence 246677 8999985 2345788888889999875
No 287
>PRK14071 6-phosphofructokinase; Provisional
Probab=35.00 E-value=3.8e+02 Score=24.98 Aligned_cols=63 Identities=22% Similarity=0.157 Sum_probs=43.0
Q ss_pred eEE-EEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHH-hCCCEEEEcceeec
Q 025565 57 EVV-AVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEV-EKPGLIILGKQAID 121 (251)
Q Consensus 57 ~V~-al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~-~~~dlIl~G~~s~d 121 (251)
.|. +=+||...--=++..+++-|+|-+++=+ ..++.+.+.+.|.+..++ .++-+|++.....+
T Consensus 177 rv~ivEvMGR~~G~LAl~~~la~ga~~iliPE--~~~~~~~l~~~i~~~~~~~~~~~iivvsEG~~~ 241 (360)
T PRK14071 177 RVMILEVMGRDAGHIALAAGIAGGADVILIPE--IPYTLENVCKKIRERQEEGKNFCLVVVSEAVRT 241 (360)
T ss_pred CEEEEEECCCCccHHHHHhHhhcCCCEEEECC--CCCCHHHHHHHHHHHHHcCCCeEEEEEcCCCcc
Confidence 454 4489975433356778888999888744 257777777777666655 46788998776543
No 288
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=34.93 E-value=79 Score=28.16 Aligned_cols=49 Identities=10% Similarity=-0.031 Sum_probs=26.6
Q ss_pred HHHHHHHCCCCEEEEEeeCCC-CCH-----HHHHHHHHHHHHHhCCCEEEEccee
Q 025565 71 TLRTGLAMGADRGVHVEAAGQ-LYP-----LTVAKILKSLVEVEKPGLIILGKQA 119 (251)
Q Consensus 71 ~l~~~la~GaD~vi~v~~~~~-~d~-----~a~a~~La~~ik~~~~dlIl~G~~s 119 (251)
.++++-+.|+|-+|++.+-.. .+. ......||+.+...+.|+||.|++-
T Consensus 165 ~v~~lk~~~~D~VI~lsH~G~~~~~~~~~~~~~~~~lA~~~~~~giD~IigGHsH 219 (285)
T cd07405 165 VVPELKQEKPDIVIAATHMGHYDNGEHGSNAPGDVEMARALPAGGLDLIVGGHSQ 219 (285)
T ss_pred HHHHHHHcCCCEEEEEecccccCCccccccCchHHHHHHhcCCCCCCEEEeCCCC
Confidence 344444568888888875321 110 0111244444432478999988864
No 289
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=34.78 E-value=1.7e+02 Score=28.14 Aligned_cols=71 Identities=18% Similarity=0.135 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 39 CEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 39 d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
.+.|+..++..++ +|.+++++..-+.. ... . ..-||+.|.+..... ..+.-...|.+++++.++|.|+.|.
T Consensus 11 ge~a~~~i~aa~~--lG~~~v~v~~~~d~--~~~--~-~~~AD~~~~i~~~~~-~~y~d~~~i~~~a~~~~iDaI~pg~ 81 (478)
T PRK08463 11 GEIAVRVIRACRD--LHIKSVAIYTEPDR--ECL--H-VKIADEAYRIGTDPI-KGYLDVKRIVEIAKACGADAIHPGY 81 (478)
T ss_pred CHHHHHHHHHHHH--cCCeEEEEECCCcc--CCc--c-hhhcCEEEEcCCCch-hcccCHHHHHHHHHHhCCCEEEECC
Confidence 3456666666665 57788877766432 111 0 012799888863211 1111123667788888999998765
No 290
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=34.55 E-value=3.2e+02 Score=24.57 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhCCCEEEEcc
Q 025565 97 VAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 97 ~a~~La~~ik~~~~dlIl~G~ 117 (251)
+...+.+.+++.+||+|++.+
T Consensus 153 ~~~~~~~~l~~~~~Dlivlag 173 (286)
T PRK13011 153 QEAQVLDVVEESGAELVVLAR 173 (286)
T ss_pred hHHHHHHHHHHhCcCEEEEeC
Confidence 344566667777777777654
No 291
>PRK13820 argininosuccinate synthase; Provisional
Probab=34.53 E-value=1.5e+02 Score=28.09 Aligned_cols=72 Identities=18% Similarity=0.255 Sum_probs=43.5
Q ss_pred hhhCCCc-eEEEEeeCCc----hhHHHHHHHHHCCCCEEEEEeeCCCC------------------------CHHHHHHH
Q 025565 50 KESGLAS-EVVAVSMGPA----QCVDTLRTGLAMGADRGVHVEAAGQL------------------------YPLTVAKI 100 (251)
Q Consensus 50 ae~~~g~-~V~al~~G~~----~~~~~l~~~la~GaD~vi~v~~~~~~------------------------d~~a~a~~ 100 (251)
++. .|. +|+++++-.. +.+.+-+.|..+|+ +.+.++-...+ .-...+..
T Consensus 23 ~e~-~g~~~Viav~vd~g~~~~e~~~a~~~a~~lGi-~~~vvd~~eef~~~~i~~~i~~n~~~~gYpl~~~~cR~~i~~~ 100 (394)
T PRK13820 23 KEK-YGYDEVITVTVDVGQPEEEIKEAEEKAKKLGD-KHYTIDAKEEFAKDYIFPAIKANALYEGYPLGTALARPLIAEK 100 (394)
T ss_pred HHh-cCCCEEEEEEEECCCChHHHHHHHHHHHHcCC-CEEEEeCHHHHHHHHHHHHHHhCccccCCcCcHHHHHHHHHHH
Confidence 444 454 7887765322 23445567888898 55555432100 11233456
Q ss_pred HHHHHHHhCCCEEEEcceeecCC
Q 025565 101 LKSLVEVEKPGLIILGKQAIDDD 123 (251)
Q Consensus 101 La~~ik~~~~dlIl~G~~s~d~~ 123 (251)
+.+++++.+++.|..|++..+.|
T Consensus 101 l~e~A~e~G~~~IA~G~t~~gnD 123 (394)
T PRK13820 101 IVEVAEKEGASAIAHGCTGKGND 123 (394)
T ss_pred HHHHHHHcCCCEEEECCCCCcch
Confidence 67777888999999999875444
No 292
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=34.37 E-value=78 Score=24.32 Aligned_cols=14 Identities=14% Similarity=-0.047 Sum_probs=6.6
Q ss_pred HHHHHHCCCCEEEE
Q 025565 72 LRTGLAMGADRGVH 85 (251)
Q Consensus 72 l~~~la~GaD~vi~ 85 (251)
..++.++|.|..|+
T Consensus 95 ~~~~~~~G~d~~~~ 108 (122)
T cd02071 95 YELLKEMGVAEIFG 108 (122)
T ss_pred HHHHHHCCCCEEEC
Confidence 34444455555444
No 293
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=34.32 E-value=2.7e+02 Score=24.99 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhCCCEEEEcc
Q 025565 98 AKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 98 a~~La~~ik~~~~dlIl~G~ 117 (251)
...+.+.+++.+||+|++-+
T Consensus 154 ~~~~~~~l~~~~~Dlivlag 173 (286)
T PRK06027 154 EARLLELIDEYQPDLVVLAR 173 (286)
T ss_pred HHHHHHHHHHhCCCEEEEec
Confidence 34555666666777666544
No 294
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=34.31 E-value=69 Score=28.96 Aligned_cols=53 Identities=9% Similarity=0.114 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccce
Q 025565 91 QLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFA 143 (251)
Q Consensus 91 ~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 143 (251)
..|+...+.++.+.+.+.+..+|+.+.+|.-.........++..+++|+++..
T Consensus 45 ~~d~~~~~~~~~~~l~~~~v~~iig~~~s~~~~~~~~~~~v~~~~~iP~Is~~ 97 (362)
T cd06367 45 DTDPISLLLSVCDLLVVQVVAGVVFSDPTDEEAVAQILDFTSAQTRIPVVGIS 97 (362)
T ss_pred CCCHHHHHHHHHHHhcccceEEEEecCCCCccchhhhhhhhhhhhcCcEEEee
Confidence 45888888888888766566666655544210113456888999999999853
No 295
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=34.25 E-value=3.8e+02 Score=24.78 Aligned_cols=93 Identities=17% Similarity=0.119 Sum_probs=51.7
Q ss_pred HHHHHHhhhhCCCceEEEEeeCC-----chhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 43 LEEALRIKESGLASEVVAVSMGP-----AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 43 le~A~~lae~~~g~~V~al~~G~-----~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
+..+.+.+.+ .|.+|..-..-. +...+.++.+..+|+|++.+.+.-....|..+.+.+..+.+..+..+ |-
T Consensus 115 ~~~~i~~ak~-~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~v~l---~~ 190 (365)
T TIGR02660 115 LARLVSFARD-RGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAVDLPL---EM 190 (365)
T ss_pred HHHHHHHHHh-CCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcCCeE---EE
Confidence 3445555554 465544221111 12344567788899999777654446789999998888766554323 32
Q ss_pred eeecCCcCcHHHHHH-HHcCCCc
Q 025565 118 QAIDDDCNQTGQMVA-GLLSWPQ 139 (251)
Q Consensus 118 ~s~d~~~~~v~~~lA-~~Lg~p~ 139 (251)
..-+..+-.++-.+| ...|+-.
T Consensus 191 H~HNd~GlA~ANalaA~~aGa~~ 213 (365)
T TIGR02660 191 HAHNDLGMATANTLAAVRAGATH 213 (365)
T ss_pred EecCCCChHHHHHHHHHHhCCCE
Confidence 222333444555554 4444443
No 296
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=34.08 E-value=2.8e+02 Score=26.17 Aligned_cols=74 Identities=24% Similarity=0.235 Sum_probs=45.7
Q ss_pred hhhhCCCceEEEEeeCCch---h-HHHHHHHHHCCCCEEEEEeeCC------------------C-C------CHHHHHH
Q 025565 49 IKESGLASEVVAVSMGPAQ---C-VDTLRTGLAMGADRGVHVEAAG------------------Q-L------YPLTVAK 99 (251)
Q Consensus 49 lae~~~g~~V~al~~G~~~---~-~~~l~~~la~GaD~vi~v~~~~------------------~-~------d~~a~a~ 99 (251)
+++. .+.+|+++++.-.. . +.+-+.|..+|+.+.+.++-.. . + .-...+.
T Consensus 18 l~e~-~~~eV~av~~d~Gq~~~~~e~a~~~a~~lG~~~~~viD~~~ef~~~~i~~~i~an~~~~g~y~l~t~l~R~~i~~ 96 (385)
T cd01999 18 LKEK-GGYEVIAVTADVGQPEEEIEAIEEKALKLGAKKHVVVDLREEFVEDYIFPAIQANALYEGTYPLGTALARPLIAK 96 (385)
T ss_pred HHHh-CCCeEEEEEEECCCcchhHHHHHHHHHHcCCCEEEEeccHHHHHHHhhHHHHHhCccccCCCcCCcHhHHHHHHH
Confidence 3444 34478888875421 2 3344668889998666653210 1 1 1223566
Q ss_pred HHHHHHHHhCCCEEEEcceeecCC
Q 025565 100 ILKSLVEVEKPGLIILGKQAIDDD 123 (251)
Q Consensus 100 ~La~~ik~~~~dlIl~G~~s~d~~ 123 (251)
.+.+.+++.+++.|.-|.+..+.|
T Consensus 97 ~l~~~A~~~Ga~~VA~G~t~~gnD 120 (385)
T cd01999 97 ALVEVAKEEGADAVAHGCTGKGND 120 (385)
T ss_pred HHHHHHHHcCCCEEEeCCCCCCCc
Confidence 677888889999999999864434
No 297
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=34.04 E-value=1.2e+02 Score=27.20 Aligned_cols=45 Identities=22% Similarity=0.194 Sum_probs=26.5
Q ss_pred HHHHHHHHHCCCCEEEEEeeC---CCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 69 VDTLRTGLAMGADRGVHVEAA---GQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 69 ~~~l~~~la~GaD~vi~v~~~---~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
.+.+++++..||||+++=+-. ...||+ .+.+++++++++-|+++-
T Consensus 94 ~e~i~~~l~~Ga~rViigT~Av~~~~~~p~----~v~~~~~~~G~~~Ivvsi 141 (262)
T PLN02446 94 SENAMSYLDAGASHVIVTSYVFRDGQIDLE----RLKDLVRLVGKQRLVLDL 141 (262)
T ss_pred HHHHHHHHHcCCCEEEEchHHHhCCCCCHH----HHHHHHHHhCCCCEEEEE
Confidence 366778888888888873210 012244 555566666666555544
No 298
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=33.75 E-value=1.9e+02 Score=25.48 Aligned_cols=99 Identities=13% Similarity=0.143 Sum_probs=60.5
Q ss_pred CCCHHhHHHHHHHHHhhhhCCCceEEEEeeCC-----chhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh
Q 025565 34 SMNPFCEIALEEALRIKESGLASEVVAVSMGP-----AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE 108 (251)
Q Consensus 34 ~in~~d~~Ale~A~~lae~~~g~~V~al~~G~-----~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~ 108 (251)
..|++-.+=|.+|.+|-.++ ......++=|. .+++..-+.++++|++.--.+-++..++++.-+...++..+.
T Consensus 61 ~ps~~l~~Rl~~A~~LYk~g-k~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i~~~- 138 (239)
T PRK10834 61 VINQYYRYRIQGAINAYNSG-KVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDT- 138 (239)
T ss_pred CcCHHHHHHHHHHHHHHHhC-CCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHHhCC-
Confidence 57887667799999998873 22334444331 234445677999997654444445677877766666666543
Q ss_pred CCCEEEEcceeecCCcCcHHHHHHHHcCCCc
Q 025565 109 KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQ 139 (251)
Q Consensus 109 ~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~ 139 (251)
-.++|+.+.. --.=+-.+|.++|+..
T Consensus 139 -~~~iIVTq~f----Hm~RA~~ia~~~Gi~~ 164 (239)
T PRK10834 139 -NDFIIITQRF----HCERALFIALHMGIQA 164 (239)
T ss_pred -CCEEEECCHH----HHHHHHHHHHHcCCce
Confidence 3456654432 1223567788888854
No 299
>PRK00509 argininosuccinate synthase; Provisional
Probab=33.72 E-value=2.5e+02 Score=26.71 Aligned_cols=73 Identities=19% Similarity=0.164 Sum_probs=48.1
Q ss_pred hhhhCCCceEEEEeeCCch---hHHHHHHHHHCCCCEEEEEeeCC-------------C--C-CHH---------HHHHH
Q 025565 49 IKESGLASEVVAVSMGPAQ---CVDTLRTGLAMGADRGVHVEAAG-------------Q--L-YPL---------TVAKI 100 (251)
Q Consensus 49 lae~~~g~~V~al~~G~~~---~~~~l~~~la~GaD~vi~v~~~~-------------~--~-d~~---------a~a~~ 100 (251)
++++ .|.+|+++++.-.. .+.+-+.|..+|+.+.++++-.+ + + .-. ..+..
T Consensus 22 l~e~-lG~eViavt~d~Gq~~dle~a~~~A~~lGi~~~~viD~~~ef~~~~i~~~i~~n~~y~g~ypl~~~lcr~~i~~~ 100 (399)
T PRK00509 22 LKET-YGCEVIAFTADVGQGEELEPIREKALKSGASEIYVEDLREEFVRDYVFPAIRANALYEGKYPLGTALARPLIAKK 100 (399)
T ss_pred HHHh-hCCeEEEEEEecCCHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHHhHHHHHHhChHhcCcCCCchHHHHHHHHHH
Confidence 4554 46789999887643 33445668889997777664210 0 0 111 44677
Q ss_pred HHHHHHHhCCCEEEEcceeecC
Q 025565 101 LKSLVEVEKPGLIILGKQAIDD 122 (251)
Q Consensus 101 La~~ik~~~~dlIl~G~~s~d~ 122 (251)
|.+++++.+.+.|.-|++..+.
T Consensus 101 l~~~A~~~G~~~IA~G~t~kGn 122 (399)
T PRK00509 101 LVEIARKEGADAVAHGCTGKGN 122 (399)
T ss_pred HHHHHHHcCCCEEEeCCCcCCC
Confidence 8888888999999999987443
No 300
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=33.46 E-value=2.2e+02 Score=24.44 Aligned_cols=72 Identities=19% Similarity=0.117 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCC-----CCCHHHHHHHHHHHHHHhCCCEE
Q 025565 39 CEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG-----QLYPLTVAKILKSLVEVEKPGLI 113 (251)
Q Consensus 39 d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~-----~~d~~a~a~~La~~ik~~~~dlI 113 (251)
.+.||-.|-+--..+++..|+-+. ........|..+...|.-- .++...+ .+| .-|++.++++++|+|
T Consensus 19 NlqaLid~~r~~~l~~~a~Vvlvi-Snk~~~~GL~rA~~~gIPt-~vip~k~~a~R~~~d-----~eL~~~l~e~~~d~v 91 (206)
T KOG3076|consen 19 NLQALIDATRDGSLGPNADVVLVI-SNKKGVYGLERAADAGIPT-LVIPHKRFASREKYD-----NELAEVLLELGTDLV 91 (206)
T ss_pred hHHHHHHhhcCCCcCCCceEEEEE-eccccchhhhHHHHCCCCE-EEeccccccccccCc-----HHHHHHHHHhCCCEE
Confidence 567777766554432344554444 4333455688888889765 3333311 234 678889999999999
Q ss_pred EEcc
Q 025565 114 ILGK 117 (251)
Q Consensus 114 l~G~ 117 (251)
+|++
T Consensus 92 ~lAG 95 (206)
T KOG3076|consen 92 CLAG 95 (206)
T ss_pred Eehh
Confidence 9876
No 301
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=33.30 E-value=1.1e+02 Score=23.37 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=21.5
Q ss_pred HHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcce
Q 025565 73 RTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGKQ 118 (251)
Q Consensus 73 ~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~~ 118 (251)
+.+-++|..=+++=-..... +......+++++.+. +|=++.|...
T Consensus 51 ~~a~~~Gl~y~~iPv~~~~~-~~~~v~~f~~~l~~~~~Pvl~hC~sG 96 (110)
T PF04273_consen 51 AAAEALGLQYVHIPVDGGAI-TEEDVEAFADALESLPKPVLAHCRSG 96 (110)
T ss_dssp HHHHHCT-EEEE----TTT---HHHHHHHHHHHHTTTTSEEEE-SCS
T ss_pred HHHHHcCCeEEEeecCCCCC-CHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 45667787754442222232 344455556666654 5777777653
No 302
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=33.23 E-value=1.8e+02 Score=24.21 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=42.0
Q ss_pred HHCCCCE-EEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEEEe
Q 025565 76 LAMGADR-GVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLD 149 (251)
Q Consensus 76 la~GaD~-vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~ 149 (251)
..+|.|+ .++++|| ..+++.|+......+|++..+.+ +.-.|+..--.|-.-.|.++...
T Consensus 4 ~~~~pd~~lllvdDD-----~~f~~~LaRa~e~RGf~v~~a~~---------~~eal~~art~~PayAvvDlkL~ 64 (182)
T COG4567 4 MMIGPDKSLLLVDDD-----TPFLRTLARAMERRGFAVVTAES---------VEEALAAARTAPPAYAVVDLKLG 64 (182)
T ss_pred cccCCCceeEEecCC-----hHHHHHHHHHHhccCceeEeecc---------HHHHHHHHhcCCCceEEEEeeec
Confidence 4567888 5566544 36789999999999999999876 44444444444445567888876
No 303
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.07 E-value=1.2e+02 Score=29.92 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=36.7
Q ss_pred hHHHHHHHHHCCCCEEEEEeeCC-CCCHHHHHHHHHHHHHHhCCCEEEEcce
Q 025565 68 CVDTLRTGLAMGADRGVHVEAAG-QLYPLTVAKILKSLVEVEKPGLIILGKQ 118 (251)
Q Consensus 68 ~~~~l~~~la~GaD~vi~v~~~~-~~d~~a~a~~La~~ik~~~~dlIl~G~~ 118 (251)
+.++++++-..|.| |++++... -.|....-..|+.+++...||+||+=..
T Consensus 455 ak~AI~~a~~~gfD-VvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vge 505 (587)
T KOG0781|consen 455 AKEAIQEARNQGFD-VVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGE 505 (587)
T ss_pred HHHHHHHHHhcCCC-EEEEeccccccCChhHHHHHHHHHhcCCCceEEEehh
Confidence 56677788888998 55665433 3466677889999999999998876443
No 304
>PRK13946 shikimate kinase; Provisional
Probab=32.73 E-value=28 Score=28.71 Aligned_cols=29 Identities=17% Similarity=0.333 Sum_probs=23.4
Q ss_pred CCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 110 PGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 110 ~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
..++|+|...+|+ ..++-.||.+||+|++
T Consensus 11 ~~I~l~G~~GsGK--sti~~~LA~~Lg~~~i 39 (184)
T PRK13946 11 RTVVLVGLMGAGK--STVGRRLATMLGLPFL 39 (184)
T ss_pred CeEEEECCCCCCH--HHHHHHHHHHcCCCeE
Confidence 4688888866555 4799999999999976
No 305
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=32.57 E-value=57 Score=29.87 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=27.3
Q ss_pred HHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceee
Q 025565 102 KSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASK 145 (251)
Q Consensus 102 a~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 145 (251)
.+.++..+||+|+..... ..+..+|+++|+|+++....
T Consensus 97 ~~~~~~~~pDlvi~d~~~------~~~~~~A~~~giP~v~~~~~ 134 (401)
T cd03784 97 VAAARDWGPDLVVADPLA------FAGAVAAEALGIPAVRLLLG 134 (401)
T ss_pred HHHhcccCCCEEEeCcHH------HHHHHHHHHhCCCeEEeecc
Confidence 334455689999987632 35678999999998866543
No 306
>PRK07832 short chain dehydrogenase; Provisional
Probab=32.55 E-value=3.2e+02 Score=23.38 Aligned_cols=73 Identities=14% Similarity=0.080 Sum_probs=41.5
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
..+.+.+++++ |.+|+.+.-.++..++...++-..|.+....+..| -.|.+.+...+.++.++. +.|.++...
T Consensus 13 G~~la~~la~~--G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~~~id~lv~~a 86 (272)
T PRK07832 13 GRATALRLAAQ--GAELFLTDRDADGLAQTVADARALGGTVPEHRALD-ISDYDAVAAFAADIHAAHGSMDVVMNIA 86 (272)
T ss_pred HHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEee-CCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 34567777775 66766554333333334455555676654433323 346666666666666554 579888655
No 307
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=32.52 E-value=98 Score=27.17 Aligned_cols=47 Identities=26% Similarity=0.109 Sum_probs=27.5
Q ss_pred HHHHHHHCCCCEEEEEeeCC-CCC------HHHHHHHHHHHHHHhCCCEEEEccee
Q 025565 71 TLRTGLAMGADRGVHVEAAG-QLY------PLTVAKILKSLVEVEKPGLIILGKQA 119 (251)
Q Consensus 71 ~l~~~la~GaD~vi~v~~~~-~~d------~~a~a~~La~~ik~~~~dlIl~G~~s 119 (251)
.++++-..|+|-+|++.+-. ..+ ....+..||+.+ .+.|+||+|++-
T Consensus 175 ~v~~lr~~~~D~IIvl~H~g~~~~~~~~~~~~~~~~~la~~~--~~vD~IlgGHsH 228 (277)
T cd07410 175 YVPKLRAEGADVVVVLAHGGFERDLEESLTGENAAYELAEEV--PGIDAILTGHQH 228 (277)
T ss_pred HHHHHHHcCCCEEEEEecCCcCCCcccccCCccHHHHHHhcC--CCCcEEEeCCCc
Confidence 34444456899888887532 111 223334444333 379999999865
No 308
>PRK05855 short chain dehydrogenase; Validated
Probab=32.48 E-value=3.3e+02 Score=25.91 Aligned_cols=25 Identities=4% Similarity=0.046 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 93 YPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 93 d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
|+....+.+.++.++. .+|+++.-.
T Consensus 375 ~~~~~~~~~~~~~~~~g~id~lv~~A 400 (582)
T PRK05855 375 DADAMEAFAEWVRAEHGVPDIVVNNA 400 (582)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEECC
Confidence 5556666666655544 467776544
No 309
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=32.38 E-value=2.6e+02 Score=25.78 Aligned_cols=45 Identities=20% Similarity=0.190 Sum_probs=33.0
Q ss_pred HHHHHhhhhC--CCceE-EEEeeCCchhHHHHHHHHHCCCCEEEEEee
Q 025565 44 EEALRIKESG--LASEV-VAVSMGPAQCVDTLRTGLAMGADRGVHVEA 88 (251)
Q Consensus 44 e~A~~lae~~--~g~~V-~al~~G~~~~~~~l~~~la~GaD~vi~v~~ 88 (251)
..|..|.+.. +...| .|..-|++..++++.+..+.|+++++.+.-
T Consensus 77 ~q~~~L~~~L~~~~~~V~~amry~~P~i~~~v~~l~~~gv~~iv~~pL 124 (320)
T COG0276 77 AQAAALEERLDLPDFKVYLAMRYGPPFIEEAVEELKKDGVERIVVLPL 124 (320)
T ss_pred HHHHHHHHHhCCCCccEEEeecCCCCcHHHHHHHHHHcCCCeEEEEEC
Confidence 4444455441 12343 578889999999999999999999999874
No 310
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=32.36 E-value=3.9e+02 Score=24.28 Aligned_cols=60 Identities=23% Similarity=0.194 Sum_probs=40.9
Q ss_pred eEEE-EeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHH-hCCCEEEEcce
Q 025565 57 EVVA-VSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEV-EKPGLIILGKQ 118 (251)
Q Consensus 57 ~V~a-l~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~-~~~dlIl~G~~ 118 (251)
.+.. =+||...--=++..+++-|+|-+++=+. .++.+...+.+.+..++ .++-+|++...
T Consensus 161 rv~ivEvMGR~~G~lAl~~~la~gad~iliPE~--~~~~~~l~~~i~~r~~~g~~~~iIvvaEG 222 (301)
T TIGR02482 161 RAFVIEVMGRHAGDLALYSGIATGAEIIIIPEF--DYDIDELIQRLKEQHEAGKKHSIIIVAEG 222 (301)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHcCCCEEEECCC--CCCHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 4544 4899764334678899999998777442 56777666666665554 56788888775
No 311
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=32.23 E-value=65 Score=32.32 Aligned_cols=54 Identities=17% Similarity=0.070 Sum_probs=32.8
Q ss_pred hHHHHHHHHHCCCCEEEEEeeCC-CCCH-HHHHHHHHHHHHHh-CCCEEEEcceeec
Q 025565 68 CVDTLRTGLAMGADRGVHVEAAG-QLYP-LTVAKILKSLVEVE-KPGLIILGKQAID 121 (251)
Q Consensus 68 ~~~~l~~~la~GaD~vi~v~~~~-~~d~-~a~a~~La~~ik~~-~~dlIl~G~~s~d 121 (251)
+...+.++-+.|||-+|.+.+.. ..|+ ...+.-.+..+++. +.|+||.|++-.-
T Consensus 184 a~~~v~~Lr~~gaDvII~LsH~G~~~d~~~~~~en~~~~l~~v~gID~Il~GHsH~~ 240 (626)
T TIGR01390 184 ARKYVPEMKAKGADIIVALAHSGISADPYQPGAENSAYYLTKVPGIDAVLFGHSHAV 240 (626)
T ss_pred HHHHHHHHHHcCCCEEEEEeccCcCCCccccccchHHHHHhcCCCCCEEEcCCCCcc
Confidence 44556666678999999998643 1121 11222223334444 7999999997643
No 312
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=32.16 E-value=3.5e+02 Score=23.72 Aligned_cols=97 Identities=7% Similarity=-0.070 Sum_probs=54.5
Q ss_pred CCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCch--hHHHHHHHH-HCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCC
Q 025565 34 SMNPFCEIALEEALRIKESGLASEVVAVSMGPAQ--CVDTLRTGL-AMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKP 110 (251)
Q Consensus 34 ~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~--~~~~l~~~l-a~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~ 110 (251)
.++-.|+ ...-++.++. .|.+|. .+|... ++.+.+.+- .||.+-+ -.. +..++++. ...+.+.|.+.+|
T Consensus 87 Rv~G~dl--~~~ll~~~~~-~~~~v~--llG~~~~v~~~a~~~l~~~y~l~i~-g~~-~Gyf~~~e-~~~i~~~I~~s~~ 158 (243)
T PRK03692 87 RVAGADL--WEALMARAGK-EGTPVF--LVGGKPEVLAQTEAKLRTQWNVNIV-GSQ-DGYFTPEQ-RQALFERIHASGA 158 (243)
T ss_pred eeChHHH--HHHHHHHHHh-cCCeEE--EECCCHHHHHHHHHHHHHHhCCEEE-EEe-CCCCCHHH-HHHHHHHHHhcCC
Confidence 4555564 4444555554 455555 446532 233333332 2455422 222 33445544 3457777888899
Q ss_pred CEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 111 GLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 111 dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
|+|++|-.+-=. -....+...+++.+++
T Consensus 159 dil~VglG~PkQ--E~~~~~~~~~~~~~v~ 186 (243)
T PRK03692 159 KIVTVAMGSPKQ--EIFMRDCRLVYPDALY 186 (243)
T ss_pred CEEEEECCCcHH--HHHHHHHHHhCCCCEE
Confidence 999999866332 3567777788876653
No 313
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=32.14 E-value=66 Score=26.25 Aligned_cols=41 Identities=15% Similarity=-0.069 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 96 TVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 96 a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
..++.|++.++..++|+|+.-. . .|-.++..+|.+||+|++
T Consensus 33 ~~~~~la~~i~~~~~d~ivgi~-~---~G~~~A~~la~~L~~~~~ 73 (169)
T TIGR01090 33 FLIDLLVERYKDANIDYIVGPE-A---RGFIFGAALAYKLGVGFV 73 (169)
T ss_pred HHHHHHHHHhccCCCCEEEeeh-h---ccHHHHHHHHHHHCCCEE
Confidence 4455555555555788777543 2 334799999999999974
No 314
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=31.96 E-value=33 Score=26.50 Aligned_cols=90 Identities=17% Similarity=0.128 Sum_probs=49.9
Q ss_pred CCHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEee------CCCCCHHHHHHHHHHHHHHh
Q 025565 35 MNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEA------AGQLYPLTVAKILKSLVEVE 108 (251)
Q Consensus 35 in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~------~~~~d~~a~a~~La~~ik~~ 108 (251)
.+-....+++.+..|+++ |.+|+.++.+..+... .+....... ............+...+++.
T Consensus 11 ~GG~e~~~~~l~~~l~~~--G~~v~v~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 79 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKR--GHEVTVVSPGVKDPIE---------EELVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKKE 79 (177)
T ss_dssp SSHHHHHHHHHHHHHHHT--T-EEEEEESS-TTS-S---------STEEEE---TT-SSTSS--HHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHC--CCEEEEEEcCCCccch---------hhccceeeeeecccccccchhHHHHHHHHHHHHHc
Confidence 445567889999999985 7899999888654111 111111110 01234556677888899999
Q ss_pred CCCEEEEcceeecCCcCcHHHHHHHHcCCCccc
Q 025565 109 KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGT 141 (251)
Q Consensus 109 ~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 141 (251)
+||+|-+-... ......++.+ +.|.+.
T Consensus 80 ~~DiVh~~~~~-----~~~~~~~~~~-~~~~v~ 106 (177)
T PF13439_consen 80 KPDIVHIHGPP-----AFWIALLACR-KVPIVY 106 (177)
T ss_dssp T-SEEECCTTH-----CCCHHHHHHH-CSCEEE
T ss_pred CCCeEEecccc-----hhHHHHHhcc-CCCEEE
Confidence 99999433322 1234444444 666553
No 315
>KOG3332 consensus N-acetylglucosaminyl phosphatidylinositol de-N-acetylase [Cell wall/membrane/envelope biogenesis]
Probab=31.94 E-value=1.4e+02 Score=26.28 Aligned_cols=48 Identities=25% Similarity=0.184 Sum_probs=37.7
Q ss_pred hHHHHHHHHHCCCC--EEEEEeeCC-------CCCHHHHHHHHHHHHHHhCCCEEEE
Q 025565 68 CVDTLRTGLAMGAD--RGVHVEAAG-------QLYPLTVAKILKSLVEVEKPGLIIL 115 (251)
Q Consensus 68 ~~~~l~~~la~GaD--~vi~v~~~~-------~~d~~a~a~~La~~ik~~~~dlIl~ 115 (251)
..|..|.|.-+|.+ .++.++.+. .+|++++++.|-+.+...+.+.|++
T Consensus 86 ~kEL~ra~~~lgi~~s~v~~l~~~~f~Dg~~~~Wd~~~v~~~l~~~ie~~~~~~iiT 142 (247)
T KOG3332|consen 86 EKELHRACAVLGIPLSNVVVLDTPFFQDGPGEDWDPDAVASILLQHIEVLNIDTIIT 142 (247)
T ss_pred HHHHHHHHHHHCCchhheEEecCCcCCCCcccccCHHHHHHHHHHHHHccCccEEEE
Confidence 45666778888974 777776431 4799999999999999999998885
No 316
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=31.89 E-value=69 Score=29.46 Aligned_cols=41 Identities=7% Similarity=-0.005 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccc
Q 025565 97 VAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTF 142 (251)
Q Consensus 97 ~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 142 (251)
.++++.+...+.++|-|.+|. -|..++..+|.+||+++++.
T Consensus 265 m~~ai~~v~~~~G~Dpv~~gG-----aG~~~a~~lA~~lg~~~v~~ 305 (318)
T TIGR03123 265 LTEAIEEVLERYGLKTVVAAG-----AGEFLAKEAAARLGRECIDV 305 (318)
T ss_pred HHHHHHHHHHHcCCCCeEEec-----chHHHHHHHHHHcCCCeecH
Confidence 444444455556777655544 44679999999999997743
No 317
>PRK12569 hypothetical protein; Provisional
Probab=31.88 E-value=95 Score=27.51 Aligned_cols=56 Identities=21% Similarity=0.159 Sum_probs=41.1
Q ss_pred EEEEEeeCC-----CCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccce
Q 025565 82 RGVHVEAAG-----QLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFA 143 (251)
Q Consensus 82 ~vi~v~~~~-----~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 143 (251)
++-+|.... ......+|.+++++++..+|+++|++-. +..-.+.|...|++++..+
T Consensus 108 ~l~hVKPHGALYN~~~~d~~la~av~~ai~~~~~~l~l~~~~------~s~~~~~A~~~Gl~~~~E~ 168 (245)
T PRK12569 108 RLQHVKPHGALYMHAARDEALARLLVEALARLDPLLILYCMD------GSATERAARELGQPVVREF 168 (245)
T ss_pred eeEEecCCHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecC------CcHHHHHHHHcCCCeEEEE
Confidence 566776221 1245678999999999999999998852 2367789999999887544
No 318
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=31.88 E-value=1.6e+02 Score=23.03 Aligned_cols=106 Identities=13% Similarity=0.057 Sum_probs=60.2
Q ss_pred CeEEEEEEeeccCCCceEEecCCCeEEccCCccCCCHHhHHHHHHHHHhhhhCCCce-EEEEeeCCchhHHHHHHHHHCC
Q 025565 1 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASE-VVAVSMGPAQCVDTLRTGLAMG 79 (251)
Q Consensus 1 M~IvV~~K~Vpd~~~~~~~~~~~~~~~~~~~~~~in~~d~~Ale~A~~lae~~~g~~-V~al~~G~~~~~~~l~~~la~G 79 (251)
|||++.++.-|.. ++.-.+|+..|+.+.+. |.+ +....+++. .-. +...
T Consensus 1 m~~~iv~~~~Py~----------------------~~~~~~al~~A~aa~~~--gh~v~~vFf~~Dg--V~~---a~~~- 50 (128)
T PRK00207 1 MRYAIAVTGPAYG----------------------TQQASSAYQFAQALLAE--GHELVSVFFYQDG--VLN---ANAL- 50 (128)
T ss_pred CEEEEEEcCCCCC----------------------CHHHHHHHHHHHHHHhC--CCCeeEEEEehHH--HHH---HhcC-
Confidence 7777777776652 23456888888888875 556 577788853 111 1111
Q ss_pred CCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeE
Q 025565 80 ADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKV 146 (251)
Q Consensus 80 aD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l 146 (251)
..+ ..+..-+...+.+++..++.++.+|+....-+. -....=|.+.+...-.....+
T Consensus 51 -------q~p-~~~~~n~~~~~~~L~~~~~v~l~vC~~~a~~RG--l~~~~~~~~~~~~~~~l~~gf 107 (128)
T PRK00207 51 -------TVP-ASDEFDLVRAWQQLAAEHGVALNVCVAAALRRG--VVDEEEAERLGLAAANLAPGF 107 (128)
T ss_pred -------CCC-chhhhhHHHHHHHHHHhcCCEEEEeHHHHHHcC--CCchhHHHhhcccccccccCc
Confidence 011 113334567777777777889999998764432 222344444444433333333
No 319
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=31.87 E-value=1.1e+02 Score=28.04 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=28.4
Q ss_pred HHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCccc
Q 025565 106 EVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGT 141 (251)
Q Consensus 106 k~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 141 (251)
...++|+++.+-....++.|.+.+++. .+|+|++.
T Consensus 85 ~~~~~d~~f~~~hg~~gEdg~iq~~le-~~gipy~G 119 (347)
T PRK14572 85 SQLDADIAFLGLHGGAGEDGRIQGFLD-TLGIPYTG 119 (347)
T ss_pred cccCcCEEEEecCCCCCCCcHHHHHHH-HcCcCcCC
Confidence 345799999998877777788988877 89999873
No 320
>PRK12435 ferrochelatase; Provisional
Probab=31.82 E-value=2.4e+02 Score=25.64 Aligned_cols=30 Identities=7% Similarity=0.044 Sum_probs=25.7
Q ss_pred EEEeeCCchhHHHHHHHHHCCCCEEEEEee
Q 025565 59 VAVSMGPAQCVDTLRTGLAMGADRGVHVEA 88 (251)
Q Consensus 59 ~al~~G~~~~~~~l~~~la~GaD~vi~v~~ 88 (251)
.|.--|++..+++++++.+.|+++++++.-
T Consensus 83 ~amry~~P~i~~~l~~l~~~g~~~iv~lpL 112 (311)
T PRK12435 83 LGLKHIEPFIEDAVEQMHNDGIEEAISIVL 112 (311)
T ss_pred EEecCCCCCHHHHHHHHHHcCCCeEEEEEC
Confidence 355668888999999999999999999974
No 321
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=31.72 E-value=3.6e+02 Score=23.72 Aligned_cols=70 Identities=20% Similarity=0.139 Sum_probs=43.5
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcce
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQ 118 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~ 118 (251)
.+..|..|++. |.+|+=++-..+. .........|.+ ++.+++... ...-+..+.+.+++.+||+|++=+-
T Consensus 20 cl~LA~~l~~~--g~~v~f~~~~~~~--~~~~~i~~~g~~-v~~~~~~~~--~~~d~~~~~~~l~~~~~d~vV~D~y 89 (279)
T TIGR03590 20 CLTLARALHAQ--GAEVAFACKPLPG--DLIDLLLSAGFP-VYELPDESS--RYDDALELINLLEEEKFDILIVDHY 89 (279)
T ss_pred HHHHHHHHHHC--CCEEEEEeCCCCH--HHHHHHHHcCCe-EEEecCCCc--hhhhHHHHHHHHHhcCCCEEEEcCC
Confidence 35567777654 6677776666542 334455567875 666664322 2223345777888889999998654
No 322
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=31.62 E-value=3.7e+02 Score=23.85 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=59.7
Q ss_pred CCHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHH-HCCC-CEEEEEeeCCCCCHHHHHHHHHHH--------
Q 025565 35 MNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGL-AMGA-DRGVHVEAAGQLYPLTVAKILKSL-------- 104 (251)
Q Consensus 35 in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~l-a~Ga-D~vi~v~~~~~~d~~a~a~~La~~-------- 104 (251)
+--.|..+.+.|.+.- +++ +.+++|... .++..+ ..+. .++|..+......-..+++.|++.
T Consensus 70 ~~~~~~~~~~~A~~~i----~~d-vILT~s~S~---~v~~~l~~~~~~~~V~v~ESrP~~eG~~~a~~L~~~GI~vtli~ 141 (253)
T PRK06372 70 IEKHEKMAIEHAKPLF----NDS-VIGTISSSQ---VLKAFISSSEKIKSVYILESRPMLEGIDMAKLLVKSGIDVVLLT 141 (253)
T ss_pred HHHHHHHHHHHHHhhc----CCC-EEEEeCCcH---HHHHHHHhcCCCCEEEEecCCCchHHHHHHHHHHHCCCCEEEEe
Confidence 3345555555544332 234 667888653 333333 2233 477777753322334444444421
Q ss_pred ---HH--HhCCCEEEEcceeecCCcC-------cHHHHHHHHcCCCcccceeeEEEe
Q 025565 105 ---VE--VEKPGLIILGKQAIDDDCN-------QTGQMVAGLLSWPQGTFASKVVLD 149 (251)
Q Consensus 105 ---ik--~~~~dlIl~G~~s~d~~~~-------~v~~~lA~~Lg~p~vt~v~~l~~~ 149 (251)
+. -.+.|.|++|..+.-.+|+ ..-+++|...+.|++.-|...++.
T Consensus 142 Dsa~~~~m~~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~~~s~Kf~ 198 (253)
T PRK06372 142 DASMCEAVLNVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSLTISMKIE 198 (253)
T ss_pred hhHHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEEeeccccC
Confidence 00 1147999999988654443 345678899999998766655554
No 323
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=31.49 E-value=1.9e+02 Score=26.26 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=34.4
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCC-CCCHHHHHHHHHHHHHHh
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG-QLYPLTVAKILKSLVEVE 108 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~-~~d~~a~a~~La~~ik~~ 108 (251)
..+.|..|++. ...+|.+++.-+--..++.......|.|+++.-+.=. ......+|..||++++..
T Consensus 227 l~~aa~~Lk~~-GA~~V~~~~tHgvfs~~a~~~l~~~~i~~iv~Tdti~~~~~~~sva~lla~~i~~~ 293 (301)
T PRK07199 227 LIEAARQLRAA-GAASPDCVVVHALFAGDAYSALAAAGIARVVSTDTVPHPSNAISLAPLLAEALRRE 293 (301)
T ss_pred HHHHHHHHHHC-CCcEEEEEEEeeeCChHHHHHHHhCCCCEEEEeCCccCCCCEEehHHHHHHHHHHH
Confidence 35566666665 2345665554332233445555556777777654311 122344566666666553
No 324
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=31.46 E-value=3.4e+02 Score=23.90 Aligned_cols=107 Identities=21% Similarity=0.137 Sum_probs=64.8
Q ss_pred CCCHHhHHHHHHHHHhhhhCCCceEEEE--eeCCchhHHHHHHHHHCCCCEEEEEee----------C--C-------CC
Q 025565 34 SMNPFCEIALEEALRIKESGLASEVVAV--SMGPAQCVDTLRTGLAMGADRGVHVEA----------A--G-------QL 92 (251)
Q Consensus 34 ~in~~d~~Ale~A~~lae~~~g~~V~al--~~G~~~~~~~l~~~la~GaD~vi~v~~----------~--~-------~~ 92 (251)
..++....+...+-+++++.....|..- -+..++..+.+..+.++|+++++.+.- | . .+
T Consensus 13 r~p~~~~~~~~~a~~~~~~~~~~~v~~~f~e~~~P~l~~~~~al~~~G~~~ivvVPlfl~~g~H~~~DIP~~L~~~~~~~ 92 (245)
T COG2138 13 RLPRGREVAEAIAARLEERGDFPPVRVAFLELAEPSLREALQALVARGVDRIVVVPLFLAAGYHTKRDIPAELGLARQAH 92 (245)
T ss_pred CCccHHHHHHHHHHHHHhhcCCccchhHHHHhcCCCHHHHHHHHHhcCCCeEEEeehhhccCchhhcccHHHHHHhhhcC
Confidence 3444455555555578877322223322 223335688999999999999999862 0 0 00
Q ss_pred ---CH------HHHHHHHHHHHHHhC--C--C---EEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 93 ---YP------LTVAKILKSLVEVEK--P--G---LIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 93 ---d~------~a~a~~La~~ik~~~--~--d---lIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
+. .+..+.+.+-+.+.. + + +++.+..|++......-.+++..|+-...
T Consensus 93 ~~~~~~p~G~~~~~~~~~~~r~~~~~~~~~~~~~~vv~~~~Gs~~~~~~~~~~~va~~l~~~~~ 156 (245)
T COG2138 93 PQVDLSPLGTHPAVLDLLGQRLEDAGADEADDAERVVLEPRGSSDPIANAAVYRVARLLGEGTA 156 (245)
T ss_pred CcccccccCCchHHHHHHHHHHHHhccccccccceEEEeccCCCcccchhHHHHHHHHHHhccC
Confidence 00 123344444333332 1 2 89999999898888888888888876653
No 325
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=31.43 E-value=3e+02 Score=24.60 Aligned_cols=79 Identities=14% Similarity=0.261 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHH--HHHCC---------------CCEEEEEeeCCCCCHHHHHHHHH
Q 025565 40 EIALEEALRIKESGLASEVVAVSMGPAQCVDTLRT--GLAMG---------------ADRGVHVEAAGQLYPLTVAKILK 102 (251)
Q Consensus 40 ~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~--~la~G---------------aD~vi~v~~~~~~d~~a~a~~La 102 (251)
++.|+.-.+.+++ .|-.|+.=.+-+..++...+. .+..| .++.+++.-.....++.+-.+.-
T Consensus 59 eeGL~iL~~vk~~-~glpvvTeV~~~~~~~~vae~vDilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~l~aae 137 (258)
T TIGR01362 59 EEGLKILQKVKEE-FGVPILTDVHESSQCEPVAEVVDIIQIPAFLCRQTDLLVAAAKTGRIVNVKKGQFLSPWDMKNVVE 137 (258)
T ss_pred HHHHHHHHHHHHH-hCCceEEEeCCHHHHHHHHhhCcEEEeCchhcchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHH
Confidence 4555555566666 566666555555443333221 11122 37888887444567777766665
Q ss_pred HHHHHhCCCEEEEccee
Q 025565 103 SLVEVEKPGLIILGKQA 119 (251)
Q Consensus 103 ~~ik~~~~dlIl~G~~s 119 (251)
.+...-+.++|||=+-.
T Consensus 138 yi~~~Gn~~viLcERG~ 154 (258)
T TIGR01362 138 KVLSTGNKNILLCERGT 154 (258)
T ss_pred HHHHcCCCcEEEEeCCC
Confidence 55555579999996644
No 326
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=31.38 E-value=4.1e+02 Score=24.27 Aligned_cols=95 Identities=19% Similarity=0.123 Sum_probs=54.7
Q ss_pred hHHHHHHHHHhhhhC--------CCceEEEEeeCCc--------hhHHHHHH-HHHCCCCEEEEEeeCCCCCHHHHHHHH
Q 025565 39 CEIALEEALRIKESG--------LASEVVAVSMGPA--------QCVDTLRT-GLAMGADRGVHVEAAGQLYPLTVAKIL 101 (251)
Q Consensus 39 d~~Ale~A~~lae~~--------~g~~V~al~~G~~--------~~~~~l~~-~la~GaD~vi~v~~~~~~d~~a~a~~L 101 (251)
++..++.|..+.... .--+|..++.|.+ .....++. +-.+|++-....-- .-|.+.++.+|
T Consensus 135 ~~~~~~~a~~~~~~~gi~~V~v~r~~rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~~G~~v~~~~iv--~Dd~~~I~~ai 212 (312)
T cd03522 135 PEALVERAEALARDGPLLRVAPFRPLRVGLIVTGSEVYGGRIEDKFGPVLRARLAALGVELVEQVIV--PHDEAAIAAAI 212 (312)
T ss_pred CHHHHHHHHHHHHhCCCcEEEecCCCEEEEEEcCCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEc--CCCHHHHHHHH
Confidence 345677777776421 1125667777763 12334544 55688874432221 12577788888
Q ss_pred HHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCC
Q 025565 102 KSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSW 137 (251)
Q Consensus 102 a~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~ 137 (251)
.+++++ ++|+|++...++- +..++.+..-..+|.
T Consensus 213 ~~~~~~-g~DlIItTGGtsv-g~~D~tp~Ai~~~G~ 246 (312)
T cd03522 213 AEALEA-GAELLILTGGASV-DPDDVTPAAIRAAGG 246 (312)
T ss_pred HHHhcC-CCCEEEEeCCccc-CCcchHHHHHHhcCc
Confidence 777653 6897766544322 335677777777764
No 327
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=31.38 E-value=1.1e+02 Score=27.09 Aligned_cols=79 Identities=13% Similarity=0.064 Sum_probs=45.8
Q ss_pred CHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 025565 36 NPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIIL 115 (251)
Q Consensus 36 n~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~ 115 (251)
-|+|.+-+.++.+|+++..|.+++=+=.|+..-+...-+..+...+...++-. .+-.+...|+.++++ ++|.|++
T Consensus 145 ip~~~~~iaa~y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~v~~~~~LivG-GGIrs~E~A~~~a~a----gAD~IVt 219 (240)
T COG1646 145 IPLDKEDIAAYYALAEKYLGMPVVYLEAGSGAGDPVPVEMVSRVLSDTPLIVG-GGIRSPEQAREMAEA----GADTIVT 219 (240)
T ss_pred CCCCcHHHHHHHHHHHHHhCCeEEEEEecCCCCCCcCHHHHHHhhccceEEEc-CCcCCHHHHHHHHHc----CCCEEEE
Confidence 35566667888889988778888877655532122222222333333333332 244445556666554 7899999
Q ss_pred ccee
Q 025565 116 GKQA 119 (251)
Q Consensus 116 G~~s 119 (251)
|+--
T Consensus 220 G~ii 223 (240)
T COG1646 220 GTII 223 (240)
T ss_pred Ccee
Confidence 8754
No 328
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=31.16 E-value=2.6e+02 Score=25.00 Aligned_cols=74 Identities=22% Similarity=0.238 Sum_probs=45.9
Q ss_pred HHhHHHHHHHHHhhhhCC-CceEEEEeeCC---chhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCC-
Q 025565 37 PFCEIALEEALRIKESGL-ASEVVAVSMGP---AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPG- 111 (251)
Q Consensus 37 ~~d~~Ale~A~~lae~~~-g~~V~al~~G~---~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~d- 111 (251)
.|...+.+-..+++++ . +.++..+--.+ ....+.++.+...|+|=++.... .+...+.++++++ ||
T Consensus 16 g~n~~~~~G~~~~~~~-~~~i~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~~g~-------~~~~~~~~vA~~y-Pd~ 86 (306)
T PF02608_consen 16 GFNQSAYEGLKRAEKE-LDGIEIIYVENVPETDADYEEAIRQLADQGYDLIIGHGF-------EYSDALQEVAKEY-PDT 86 (306)
T ss_dssp SHHHHHHHHHHHHHHH-CTTEEEEEEES-S-TCHHHHHHHHHHHHTT-SEEEEESG-------GGHHHHHHHHTC--TTS
T ss_pred cHHHHHHHHHHHHHHH-cCCceEEEEecCCccHHHHHHHHHHHHHcCCCEEEEccH-------HHHHHHHHHHHHC-CCC
Confidence 4555666777777777 5 66766554443 45677889999999998887652 3456666777765 55
Q ss_pred -EEEEccee
Q 025565 112 -LIILGKQA 119 (251)
Q Consensus 112 -lIl~G~~s 119 (251)
.+++..+.
T Consensus 87 ~F~~~d~~~ 95 (306)
T PF02608_consen 87 KFIIIDGYI 95 (306)
T ss_dssp EEEEESS--
T ss_pred EEEEEecCc
Confidence 55554443
No 329
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=31.16 E-value=82 Score=33.74 Aligned_cols=65 Identities=20% Similarity=0.219 Sum_probs=43.1
Q ss_pred HHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEc
Q 025565 37 PFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILG 116 (251)
Q Consensus 37 ~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G 116 (251)
.+|.+++..++.|++. |.+++.+...|+... .... -+|+.|.-. . +...+.+++++++||.|+.+
T Consensus 573 efdy~~v~~~~aLk~~--G~~vI~vn~npetvs----~~~~-~aD~~y~ep----~----~~e~vl~I~~~e~~dgVI~~ 637 (1068)
T PRK12815 573 EFDYSSVHAAFALKKE--GYETIMINNNPETVS----TDYD-TADRLYFEP----L----TLEDVLNVAEAENIKGVIVQ 637 (1068)
T ss_pred ccchhHHHHHHHHHHc--CCEEEEEeCCccccc----cccc-cCceEEEcc----C----CHHHHHHHHhhcCCCEEEEe
Confidence 6888889888888874 778888777764211 1111 257766521 1 23567778888999999864
No 330
>PRK14974 cell division protein FtsY; Provisional
Probab=31.14 E-value=3.8e+02 Score=24.71 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=7.5
Q ss_pred HHHHHHCCCCEEEEEee
Q 025565 72 LRTGLAMGADRGVHVEA 88 (251)
Q Consensus 72 l~~~la~GaD~vi~v~~ 88 (251)
++.+.+.|.| +++++.
T Consensus 215 i~~~~~~~~D-vVLIDT 230 (336)
T PRK14974 215 IEHAKARGID-VVLIDT 230 (336)
T ss_pred HHHHHhCCCC-EEEEEC
Confidence 3344444555 444443
No 331
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=31.14 E-value=35 Score=30.13 Aligned_cols=24 Identities=13% Similarity=0.367 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhCCCEEEEcce
Q 025565 95 LTVAKILKSLVEVEKPGLIILGKQ 118 (251)
Q Consensus 95 ~a~a~~La~~ik~~~~dlIl~G~~ 118 (251)
..=+++++.+|++.+|+++|||+-
T Consensus 192 h~GS~~V~dlIk~~~P~ivl~Ghi 215 (255)
T PF14582_consen 192 HVGSAAVRDLIKTYNPDIVLCGHI 215 (255)
T ss_dssp TTSBHHHHHHHHHH--SEEEE-SS
T ss_pred cccHHHHHHHHHhcCCcEEEeccc
Confidence 344678899999999999999985
No 332
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=31.08 E-value=73 Score=29.30 Aligned_cols=46 Identities=17% Similarity=0.145 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHH------cCCCcccceeeE
Q 025565 97 VAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGL------LSWPQGTFASKV 146 (251)
Q Consensus 97 ~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~------Lg~p~vt~v~~l 146 (251)
.+..|.+.+++++||+|++-+-... .++..++.+ ++.|+++.++++
T Consensus 88 ~~~~l~~~i~~~~pDvIi~thp~~~----~~~~~~l~~~~~~~~~~~p~~~~~tD~ 139 (382)
T PLN02605 88 VAREVAKGLMKYKPDIIVSVHPLMQ----HVPLRVLRWQGKELGKKIPFTTVVTDL 139 (382)
T ss_pred HHHHHHHHHHhcCcCEEEEeCcCcc----cCHHHHHHHHhhccCCCCCEEEEECCC
Confidence 3456778889999999999432211 233333332 478888777665
No 333
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=31.04 E-value=40 Score=24.71 Aligned_cols=89 Identities=20% Similarity=0.090 Sum_probs=51.7
Q ss_pred HHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEe--eCC-CCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 41 IALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVE--AAG-QLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~--~~~-~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
++++.|.+|.+. |.++.| +-| ..+.+.+.|.+-.-+++ ... ..+... .+.+.+++.+.|+|++=.
T Consensus 1 e~~~~a~~l~~l--G~~i~A-T~g------Ta~~L~~~Gi~~~~v~~~~~~~~~~~g~~---~i~~~i~~~~IdlVIn~~ 68 (95)
T PF02142_consen 1 EIVPLAKRLAEL--GFEIYA-TEG------TAKFLKEHGIEVTEVVNKIGEGESPDGRV---QIMDLIKNGKIDLVINTP 68 (95)
T ss_dssp THHHHHHHHHHT--TSEEEE-EHH------HHHHHHHTT--EEECCEEHSTG-GGTHCH---HHHHHHHTTSEEEEEEE-
T ss_pred CHHHHHHHHHHC--CCEEEE-ChH------HHHHHHHcCCCceeeeeecccCccCCchh---HHHHHHHcCCeEEEEEeC
Confidence 368899999984 777775 333 44555578987222222 111 122111 566788888999888744
Q ss_pred eeecC-C--cCcHHHHHHHHcCCCccc
Q 025565 118 QAIDD-D--CNQTGQMVAGLLSWPQGT 141 (251)
Q Consensus 118 ~s~d~-~--~~~v~~~lA~~Lg~p~vt 141 (251)
..... . .+..--|+|...++|++|
T Consensus 69 ~~~~~~~~~dg~~irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 69 YPFSDQEHTDGYKIRRAAVEYNIPLFT 95 (95)
T ss_dssp -THHHHHTHHHHHHHHHHHHTTSHEEC
T ss_pred CCCcccccCCcHHHHHHHHHcCCCCcC
Confidence 33221 1 244557899999999876
No 334
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=30.91 E-value=4.3e+02 Score=24.41 Aligned_cols=91 Identities=10% Similarity=0.036 Sum_probs=54.6
Q ss_pred HHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHH-HCCCC-EEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcce
Q 025565 41 IALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGL-AMGAD-RGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQ 118 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~l-a~GaD-~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~ 118 (251)
..+++..++++.+++.++.-+.+|.....+.+++.. ..+.+ ++.... ..+. ..+.+..+..+.|+++..+.
T Consensus 247 ~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G---~v~~----~e~~~~~~~~~~~v~v~~S~ 319 (407)
T cd04946 247 LIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTG---ELSN----SEVYKLYKENPVDVFVNLSE 319 (407)
T ss_pred HHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEec---CCCh----HHHHHHHhhcCCCEEEeCCc
Confidence 567888888876334466656677655455666655 34543 444432 1222 23444555557888887775
Q ss_pred eecCCcCcHHHHHHHHcCCCccc
Q 025565 119 AIDDDCNQTGQMVAGLLSWPQGT 141 (251)
Q Consensus 119 s~d~~~~~v~~~lA~~Lg~p~vt 141 (251)
+ ++--+...=|-..|.|+++
T Consensus 320 ~---Eg~p~~llEAma~G~PVIa 339 (407)
T cd04946 320 S---EGLPVSIMEAMSFGIPVIA 339 (407)
T ss_pred c---ccccHHHHHHHHcCCCEEe
Confidence 5 3334666668888999864
No 335
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=30.89 E-value=1.4e+02 Score=26.45 Aligned_cols=52 Identities=15% Similarity=0.115 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccce
Q 025565 89 AGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFA 143 (251)
Q Consensus 89 ~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 143 (251)
|...|+........+++.+.+.+.|+-+..| ........+++..++|+++..
T Consensus 51 D~~~~~~~a~~~~~~li~~~~v~aviG~~~s---~~~~a~~~~~~~~~vp~i~~~ 102 (345)
T cd06338 51 DDQSNPARAARAYERLITQDKVDFLLGPYSS---GLTLAAAPVAEKYGVPMVAGS 102 (345)
T ss_pred cCCCCHHHHHHHHHHHHhhcCccEEecCCcc---hhHHHHHHHHHHhCCcEEecC
Confidence 4466787777777788877788888765543 122334457788899998754
No 336
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=30.89 E-value=3.3e+02 Score=22.96 Aligned_cols=81 Identities=10% Similarity=0.012 Sum_probs=48.0
Q ss_pred CCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCch--hHHHHHHHHHCCCCEEEEEeeCC-CCCHHHHHHHHHHHHHHhCC
Q 025565 34 SMNPFCEIALEEALRIKESGLASEVVAVSMGPAQ--CVDTLRTGLAMGADRGVHVEAAG-QLYPLTVAKILKSLVEVEKP 110 (251)
Q Consensus 34 ~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~--~~~~l~~~la~GaD~vi~v~~~~-~~d~~a~a~~La~~ik~~~~ 110 (251)
.-|||-...++...+.+++ .|..+.....+... ..+.++.++++++|-+++..... ..++. ...+.++ ++.+.
T Consensus 9 ~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~--~~~~~~~-~~~~i 84 (273)
T cd01541 9 ISDYIFPSIIRGIESVLSE-KGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNPN--IDLYLKL-EKLGI 84 (273)
T ss_pred ccchhHHHHHHHHHHHHHH-cCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecccccccccc--HHHHHHH-HHCCC
Confidence 4588888887777777777 67777655444322 23567889999999888764221 11111 1233333 44456
Q ss_pred CEEEEcce
Q 025565 111 GLIILGKQ 118 (251)
Q Consensus 111 dlIl~G~~ 118 (251)
-+|+++..
T Consensus 85 pvV~~~~~ 92 (273)
T cd01541 85 PYVFINAS 92 (273)
T ss_pred CEEEEecC
Confidence 67777653
No 337
>PF13941 MutL: MutL protein
Probab=30.75 E-value=2.7e+02 Score=27.05 Aligned_cols=74 Identities=18% Similarity=0.221 Sum_probs=40.1
Q ss_pred eEEEEeeCCchhHHHHH-HHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHc
Q 025565 57 EVVAVSMGPAQCVDTLR-TGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLL 135 (251)
Q Consensus 57 ~V~al~~G~~~~~~~l~-~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~L 135 (251)
+.+++-+-+.-..++.| .++..|+-=+...+. .... .-|.+ +++.+||+||+-.-. |+......-..|++|
T Consensus 78 rmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~--~l~~----~~l~~-i~~~~PDiILLaGGt-DgG~~~~il~nA~~L 149 (457)
T PF13941_consen 78 RMVVIGLVPDLTAEAAKRAALGAGARVLQVYSY--ELTE----EDLEE-IREIRPDIILLAGGT-DGGNKEVILHNAEML 149 (457)
T ss_pred eEEEEecCHHHHHHHHHHHHhcCCcEEEEEecc--CCCH----HHHHH-HhccCCCEEEEeCCc-cCCchHHHHHHHHHH
Confidence 44555455544344444 455566653333332 2222 23333 567789988775544 455577777888777
Q ss_pred CCC
Q 025565 136 SWP 138 (251)
Q Consensus 136 g~p 138 (251)
.-.
T Consensus 150 a~~ 152 (457)
T PF13941_consen 150 AEA 152 (457)
T ss_pred HhC
Confidence 643
No 338
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=30.74 E-value=2.4e+02 Score=25.96 Aligned_cols=84 Identities=13% Similarity=-0.035 Sum_probs=51.4
Q ss_pred ceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCC----C------CCHH------HHHHHHHHHHHHh-----------
Q 025565 56 SEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG----Q------LYPL------TVAKILKSLVEVE----------- 108 (251)
Q Consensus 56 ~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~----~------~d~~------a~a~~La~~ik~~----------- 108 (251)
.+|..+-+|.- ....++.+..+|+.++.+++.|. + ++.. .-+.++++.+++.
T Consensus 25 ~~VlIiG~Ggl-Gs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~ 103 (338)
T PRK12475 25 KHVLIVGAGAL-GAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVT 103 (338)
T ss_pred CcEEEECCCHH-HHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEec
Confidence 46777766653 25577888899999999998653 1 1111 1223333333333
Q ss_pred ------------CCCEEEEcceeecCCcCcHHHHHHHHcCCCcccc
Q 025565 109 ------------KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTF 142 (251)
Q Consensus 109 ------------~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 142 (251)
++|+|+.+.-+ ..++.+-..++...++|++..
T Consensus 104 ~~~~~~~~~~~~~~DlVid~~D~--~~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 104 DVTVEELEELVKEVDLIIDATDN--FDTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred cCCHHHHHHHhcCCCEEEEcCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 46777776532 244556667888899998743
No 339
>COG3150 Predicted esterase [General function prediction only]
Probab=30.61 E-value=2.6e+02 Score=23.70 Aligned_cols=62 Identities=13% Similarity=-0.063 Sum_probs=42.7
Q ss_pred HHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcceeecCCcCcHHHHHHHHcCCCccc
Q 025565 75 GLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGT 141 (251)
Q Consensus 75 ~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 141 (251)
.-..+-+.-+.+... ..++...++-|-+++.+. +.+..|||.+- ||-.+-+|+++-|++.+-
T Consensus 24 ~~~~~~~i~y~~p~l-~h~p~~a~~ele~~i~~~~~~~p~ivGssL----GGY~At~l~~~~Girav~ 86 (191)
T COG3150 24 IDEDVRDIEYSTPHL-PHDPQQALKELEKAVQELGDESPLIVGSSL----GGYYATWLGFLCGIRAVV 86 (191)
T ss_pred HhccccceeeecCCC-CCCHHHHHHHHHHHHHHcCCCCceEEeecc----hHHHHHHHHHHhCChhhh
Confidence 333455555554322 457777777777788776 48899999853 455999999999998763
No 340
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=30.29 E-value=2.8e+02 Score=25.39 Aligned_cols=73 Identities=10% Similarity=0.108 Sum_probs=38.3
Q ss_pred CceEEEEeeCCc--hhHHHHHHHHHCCCC-EEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHH
Q 025565 55 ASEVVAVSMGPA--QCVDTLRTGLAMGAD-RGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMV 131 (251)
Q Consensus 55 g~~V~al~~G~~--~~~~~l~~~la~GaD-~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~l 131 (251)
|.+++.++.|.- .+.++.+.+...|.+ ++|-+..=..+|.+ .|.+.+++.+.=+++=-+...++ ++..+
T Consensus 201 G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~----~i~~~~~~t~~vv~vEE~~~~gG----lG~~v 272 (327)
T CHL00144 201 GNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLISLKPLDLG----TISKSVKKTHKVLIVEECMKTGG----IGAEL 272 (327)
T ss_pred CCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCcCCCCCHH----HHHHHHHhhCcEEEEECCCCCCC----HHHHH
Confidence 678999999973 234445555567765 33332211134554 55556666555444333333343 55555
Q ss_pred HHHc
Q 025565 132 AGLL 135 (251)
Q Consensus 132 A~~L 135 (251)
|+.+
T Consensus 273 a~~l 276 (327)
T CHL00144 273 IAQI 276 (327)
T ss_pred HHHH
Confidence 5544
No 341
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=30.27 E-value=1e+02 Score=26.86 Aligned_cols=47 Identities=26% Similarity=0.123 Sum_probs=28.4
Q ss_pred HHHHHHCCCCEEEEEeeCC-CCC-HHHHHHHHHHHHHHhCCCEEEEcceee
Q 025565 72 LRTGLAMGADRGVHVEAAG-QLY-PLTVAKILKSLVEVEKPGLIILGKQAI 120 (251)
Q Consensus 72 l~~~la~GaD~vi~v~~~~-~~d-~~a~a~~La~~ik~~~~dlIl~G~~s~ 120 (251)
...+.+.|+|-++++.+-. ..+ .......||+.. -++|+||.|++-.
T Consensus 164 v~~l~~~~~D~iIvl~H~G~~~~~~~~~~~~la~~~--~giDvIigGH~H~ 212 (257)
T cd07408 164 VAALKAKGADVIVALGHLGVDRTSSPWTSTELAANV--TGIDLIIDGHSHT 212 (257)
T ss_pred HHHHHhCCCCEEEEEeCcCcCCCCCCccHHHHHHhC--CCceEEEeCCCcc
Confidence 3445567999999998643 222 122234444422 3799999998753
No 342
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=30.25 E-value=2.1e+02 Score=27.89 Aligned_cols=72 Identities=19% Similarity=0.118 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 39 CEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 39 d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
.+.|+...+.+++ .|.+++++.--+. . .+. ...-||+.+.+..+...+++.-...|.+++++.++|.|+.|.
T Consensus 11 Geia~~iiraar~--lGi~~V~v~s~~d-~-~a~---~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~pg~ 82 (499)
T PRK08654 11 GEIAIRVMRACRE--LGIKTVAVYSEAD-K-NAL---FVKYADEAYPIGPAPPSKSYLNIERIIDVAKKAGADAIHPGY 82 (499)
T ss_pred cHHHHHHHHHHHH--cCCeEEEEecccc-c-ccc---chhhCCEEEEcCCCCcccCccCHHHHHHHHHHhCCCEEEECC
Confidence 4456666666665 4777777643321 1 111 011279988886322112222234577778888899998774
No 343
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=30.25 E-value=33 Score=24.85 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=13.8
Q ss_pred hHHHHHHHhhhcCCcC
Q 025565 236 SVEELIDKLKNEARVI 251 (251)
Q Consensus 236 ~~~~l~~~L~~~~~~~ 251 (251)
++++|++.|.++||+|
T Consensus 46 ~a~~Li~FL~~kgKfi 61 (77)
T TIGR03853 46 TADELLQFLLKKGKFI 61 (77)
T ss_pred CHHHHHHHHHHCCCEe
Confidence 3889999999999875
No 344
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=30.21 E-value=1.8e+02 Score=21.40 Aligned_cols=7 Identities=43% Similarity=0.639 Sum_probs=2.7
Q ss_pred CCCCEEE
Q 025565 78 MGADRGV 84 (251)
Q Consensus 78 ~GaD~vi 84 (251)
.|+|.++
T Consensus 108 ~g~d~vi 114 (116)
T PF02254_consen 108 AGADHVI 114 (116)
T ss_dssp TT-SEEE
T ss_pred CCcCEEE
Confidence 4444443
No 345
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=30.20 E-value=1.1e+02 Score=25.60 Aligned_cols=42 Identities=19% Similarity=-0.028 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHh--CCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 95 LTVAKILKSLVEVE--KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 95 ~a~a~~La~~ik~~--~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
...++.|++.+++. ++|+|+.- +..+-.++..+|.+|+.|++
T Consensus 42 ~~~~~~La~~i~~~~~~~d~Ivgi----~~gGi~~A~~la~~L~~~~i 85 (187)
T TIGR01367 42 MELGGELAQKILDYGLKVDFIVGP----AMGGVILGYEVARQLSVRSI 85 (187)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEE----ccCcHHHHHHHHHHhCCCeE
Confidence 35566677777665 67888743 33556789999999999964
No 346
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=30.05 E-value=3.7e+02 Score=23.31 Aligned_cols=75 Identities=13% Similarity=0.089 Sum_probs=45.2
Q ss_pred CCCHHhHHHHHHHHHhhhhCCCceEEEEeeCC--c--hhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhC
Q 025565 34 SMNPFCEIALEEALRIKESGLASEVVAVSMGP--A--QCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEK 109 (251)
Q Consensus 34 ~in~~d~~Ale~A~~lae~~~g~~V~al~~G~--~--~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~ 109 (251)
.-|||-...+....+.++. .|..+.....+. . .-.+.++.++..|+|-+++... +.......+..+ ++ +
T Consensus 9 ~~n~f~~~~~~gi~~~a~~-~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~----~~~~~~~~l~~~-~~-~ 81 (295)
T TIGR02955 9 LKDSYWLSINYGMVEQAKH-LGVELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTV----SPEALNHDLAQL-TK-S 81 (295)
T ss_pred CCcHHHHHHHHHHHHHHHH-hCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecC----ChhhhhHHHHHH-hc-C
Confidence 3488887777666665655 577887766642 1 1234678889999999888642 122223444443 32 4
Q ss_pred CCEEEE
Q 025565 110 PGLIIL 115 (251)
Q Consensus 110 ~dlIl~ 115 (251)
.-+|++
T Consensus 82 iPvV~~ 87 (295)
T TIGR02955 82 IPVFAL 87 (295)
T ss_pred CCEEEE
Confidence 456655
No 347
>PRK05406 LamB/YcsF family protein; Provisional
Probab=30.04 E-value=1.1e+02 Score=27.06 Aligned_cols=56 Identities=20% Similarity=0.171 Sum_probs=41.0
Q ss_pred EEEEEeeCC-C----CCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccce
Q 025565 82 RGVHVEAAG-Q----LYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFA 143 (251)
Q Consensus 82 ~vi~v~~~~-~----~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 143 (251)
++-+|.... - .....+|+++.++++..+|++++++.. +..-.+.|..+|++++..+
T Consensus 105 ~l~hVKPHGALYN~~~~d~~~a~av~~ai~~~~~~l~l~~~~------~s~~~~~A~~~Gl~~~~E~ 165 (246)
T PRK05406 105 RVSHVKPHGALYNMAAKDPALADAVAEAVAAVDPSLILVGLA------GSELIRAAEEAGLRTASEV 165 (246)
T ss_pred eeEEeCccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecC------ChHHHHHHHHcCCcEEEEE
Confidence 566666222 1 234678999999999999999998852 2367899999999987443
No 348
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=29.85 E-value=1.4e+02 Score=32.03 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=38.2
Q ss_pred HHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEc
Q 025565 37 PFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILG 116 (251)
Q Consensus 37 ~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G 116 (251)
++|.+++..+..|++. |.+++.+...|+...... --+|+.|.- + .+...+.++++++++|.|+++
T Consensus 572 efd~~~v~~i~al~~~--G~~vI~v~~npetvs~d~-----~~~D~ly~e--p------~~~e~vl~i~~~e~idgVI~~ 636 (1050)
T TIGR01369 572 EFDYCCVHAVLALREL--GYETIMINYNPETVSTDY-----DTSDRLYFE--P------LTFEDVMNIIELEKPEGVIVQ 636 (1050)
T ss_pred ccchHHHHHHHHHHhC--CCEEEEEecCCccccccc-----cccceEEEe--c------CCHHHHHHHHhhcCCCEEEEc
Confidence 4788888888888774 677777766654211000 024554431 1 123556667777888888754
No 349
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=29.85 E-value=2.8e+02 Score=25.41 Aligned_cols=35 Identities=9% Similarity=-0.058 Sum_probs=25.0
Q ss_pred CCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeE
Q 025565 110 PGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKV 146 (251)
Q Consensus 110 ~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l 146 (251)
+|+|+...- ..+++.++.+++...+.|+++.+..+
T Consensus 109 ~DvV~d~tD--n~esR~L~~~~~~~~~k~~I~aalGf 143 (307)
T cd01486 109 HDVIFLLTD--SRESRWLPTLLSAAKNKLVINAALGF 143 (307)
T ss_pred CCEEEECCC--CHHHHHHHHHHHHHhCCcEEEEEecc
Confidence 466665552 24667899999999999999754444
No 350
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=29.77 E-value=3e+02 Score=25.40 Aligned_cols=85 Identities=13% Similarity=0.071 Sum_probs=53.9
Q ss_pred ceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCC----C------CCHH----HHHHHHHHHHHHh-------------
Q 025565 56 SEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG----Q------LYPL----TVAKILKSLVEVE------------- 108 (251)
Q Consensus 56 ~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~----~------~d~~----a~a~~La~~ik~~------------- 108 (251)
.+|..+-.|+- ..+.++.+...|+.++.++++|. + ++.. .-+.++++.+++.
T Consensus 29 ~~VlivG~GGl-Gs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~i 107 (355)
T PRK05597 29 AKVAVIGAGGL-GSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRRL 107 (355)
T ss_pred CeEEEECCCHH-HHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEeec
Confidence 47777777764 35678888999999999998763 1 1111 1233333333332
Q ss_pred ----------CCCEEEEcceeecCCcCcHHHHHHHHcCCCcccce
Q 025565 109 ----------KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFA 143 (251)
Q Consensus 109 ----------~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 143 (251)
++|+|+...-+ ..++.+--.++..+++|++...
T Consensus 108 ~~~~~~~~~~~~DvVvd~~d~--~~~r~~~n~~c~~~~ip~v~~~ 150 (355)
T PRK05597 108 TWSNALDELRDADVILDGSDN--FDTRHLASWAAARLGIPHVWAS 150 (355)
T ss_pred CHHHHHHHHhCCCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEE
Confidence 46888876532 2455667778899999988553
No 351
>PF10128 OpcA_G6PD_assem: Glucose-6-phosphate dehydrogenase subunit; InterPro: IPR004555 The opcA gene is found immediately downstream of zwf, the glucose-6-phosphate dehydrogenase (G6PDH) gene, in a number of species, including Mycobacterium tuberculosis, Streptomyces coelicolor, Nostoc punctiforme (strain ATCC 29133/PCC 73102), and Synechococcus sp. (strain PCC 7942). In the latter, disruption of opcA was shown to block assembly of G6PDH into active oligomeric forms. The protein is thought to play a role in the functional assembly of glucose-6-phosphate dehydrogenase [].
Probab=29.74 E-value=4e+02 Score=23.66 Aligned_cols=89 Identities=20% Similarity=0.113 Sum_probs=49.6
Q ss_pred CceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHH-------------------------HHHHhC
Q 025565 55 ASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKS-------------------------LVEVEK 109 (251)
Q Consensus 55 g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~-------------------------~ik~~~ 109 (251)
+..|++.--|+....+-+..-++.-|++.|.=+ ....++...-..+++ +...-.
T Consensus 71 DlPvv~WW~~~~~p~~~~~~~L~~~a~R~I~DS-~~~~~p~~~l~~l~~~v~~~~~~~DLaW~Rlt~WR~llA~~fD~p~ 149 (270)
T PF10128_consen 71 DLPVVLWWPGDPAPANPLFDPLGRLADRRITDS-AAFDDPEAALRRLARLVSYSPGDTDLAWTRLTPWRELLAQAFDQPP 149 (270)
T ss_pred CCCEEEEECCCCCCcchHHHHHHHhCCEEEEcC-CccCCcHHHHHHHHHhccCCCCCccCcchhhhHHHHHHHHHhCCcc
Confidence 445666666652234555666666789988822 112344444444433 322210
Q ss_pred -------C-CEEEEcceeecCCcCcHHHHHHHHcCCCccccee
Q 025565 110 -------P-GLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFAS 144 (251)
Q Consensus 110 -------~-dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~ 144 (251)
. .+.+.|....-...-.+++-||.+|||+......
T Consensus 150 ~~~~L~~i~~v~I~~~~~~p~~a~LlagWLa~rLgw~~~~~~~ 192 (270)
T PF10128_consen 150 RRPALDRITSVEIEGAAGNPAQALLLAGWLASRLGWPVERAVS 192 (270)
T ss_pred cchhhcCceEEEEEecCCCHHHHHHHHHHHHHhcCCceEEEec
Confidence 1 4556665442224456889999999999876553
No 352
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=29.55 E-value=3.5e+02 Score=22.95 Aligned_cols=50 Identities=8% Similarity=0.083 Sum_probs=33.5
Q ss_pred ccCCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEee
Q 025565 32 KMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEA 88 (251)
Q Consensus 32 ~~~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~ 88 (251)
.+.++|. ++|.+++.+ .|.+|..+.+|..+ ++.++......--+.|++.+
T Consensus 125 ~~~i~P~-----~aAa~lA~~-~gV~iytIgiG~~d-~~~l~~iA~~tgG~~F~A~d 174 (191)
T cd01455 125 RYGIQPK-----KLADALARE-PNVNAFVIFIGSLS-DEADQLQRELPAGKAFVCMD 174 (191)
T ss_pred CCCCChH-----HHHHHHHHh-CCCEEEEEEecCCC-HHHHHHHHhCCCCcEEEeCC
Confidence 3456774 345555655 68899999999753 56677766666667777653
No 353
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=29.38 E-value=3e+02 Score=23.62 Aligned_cols=75 Identities=13% Similarity=0.082 Sum_probs=48.2
Q ss_pred CCCHHhHHHHHHHHHhhhhC--CCceEEEE-eeCCch--hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh
Q 025565 34 SMNPFCEIALEEALRIKESG--LASEVVAV-SMGPAQ--CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE 108 (251)
Q Consensus 34 ~in~~d~~Ale~A~~lae~~--~g~~V~al-~~G~~~--~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~ 108 (251)
+=.|-|..|+|.+...+... .++.+.-+ -+||++ ....++.+.....+++|+..++ ..+-++||.-|++.++..
T Consensus 85 Ve~p~Dv~a~E~~~~f~G~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnp-TvEGeaTA~YI~~~l~~~ 163 (198)
T COG0353 85 VEEPKDVLALEKTGEFRGLYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNP-TVEGEATALYIARLLKPL 163 (198)
T ss_pred EcchHHHHHHHHhcccCeeEEEecCccCcccCCCcccccHHHHHHHHhcCCCceEEEecCC-CccchHHHHHHHHHHhhc
Confidence 44799999999986664331 11111111 136653 2344555655556699998854 678899999999999975
Q ss_pred C
Q 025565 109 K 109 (251)
Q Consensus 109 ~ 109 (251)
+
T Consensus 164 ~ 164 (198)
T COG0353 164 G 164 (198)
T ss_pred C
Confidence 3
No 354
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=29.33 E-value=3.4e+02 Score=24.16 Aligned_cols=100 Identities=19% Similarity=0.137 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhhhCCCceEEEEeeCCchhHH-HHHHHHHCCCC----------EEEEEeeCC-------CCCHHH-----
Q 025565 40 EIALEEALRIKESGLASEVVAVSMGPAQCVD-TLRTGLAMGAD----------RGVHVEAAG-------QLYPLT----- 96 (251)
Q Consensus 40 ~~Ale~A~~lae~~~g~~V~al~~G~~~~~~-~l~~~la~GaD----------~vi~v~~~~-------~~d~~a----- 96 (251)
+.+|=.|+++..+.. .+...|.+|-.++.- ..+.+..+|+. ++++++... ..+++.
T Consensus 9 lAgllnAlk~~g~~l-~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~ 87 (254)
T cd00762 9 VAGLLAALKVTKKKI-SEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLAR 87 (254)
T ss_pred HHHHHHHHHHhCCCh-hhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHH
Confidence 455667788876633 245666777665433 34555566665 888887432 122322
Q ss_pred HHH------HHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 97 VAK------ILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 97 ~a~------~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
+++ -|.+++++.+||+++--+...+-.+.++--.+|..-.-|.|
T Consensus 88 ~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PII 137 (254)
T cd00762 88 FANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVI 137 (254)
T ss_pred HcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEE
Confidence 222 58899999999987754432455666676666666677765
No 355
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=29.27 E-value=30 Score=28.56 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=18.9
Q ss_pred EEEcceeecCCcCcHHHHHHHHcCCCcccc
Q 025565 113 IILGKQAIDDDCNQTGQMVAGLLSWPQGTF 142 (251)
Q Consensus 113 Il~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 142 (251)
|-++.+. +..+..++-+||++||++++..
T Consensus 2 ITIsr~~-Gsgg~~Ia~~LA~~Lg~~~~d~ 30 (179)
T PF13189_consen 2 ITISRQY-GSGGREIAERLAEKLGYPYYDR 30 (179)
T ss_dssp EEEEE-T-TSSHHHHHHHHHHHCT--EE-H
T ss_pred EEECCCC-CCChHHHHHHHHHHcCCccCCH
Confidence 3444444 4567889999999999999765
No 356
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=29.23 E-value=84 Score=26.34 Aligned_cols=39 Identities=15% Similarity=0.073 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 97 VAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 97 ~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
.+..+++.+ ..++|+|++..+ .+-.++..+|..|+.|+.
T Consensus 40 ~~~~l~~~~-~~~~D~Ivg~e~----~Gi~lA~~vA~~l~~p~~ 78 (187)
T PRK12560 40 TAKEIIKYI-DKDIDKIVTEED----KGAPLATPVSLLSGKPLA 78 (187)
T ss_pred HHHHHHHHh-CCCCCEEEEEcc----ccHHHHHHHHHhhCCCEE
Confidence 444555545 447999986553 445799999999999963
No 357
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=29.22 E-value=2.4e+02 Score=26.15 Aligned_cols=72 Identities=10% Similarity=0.112 Sum_probs=38.2
Q ss_pred CceEEEEeeCCch--hHHHHHHHHHCCCC-EEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEccee-ecCCcCcHHHH
Q 025565 55 ASEVVAVSMGPAQ--CVDTLRTGLAMGAD-RGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQA-IDDDCNQTGQM 130 (251)
Q Consensus 55 g~~V~al~~G~~~--~~~~l~~~la~GaD-~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s-~d~~~~~v~~~ 130 (251)
|.+++.++.|..- +.++.+.+...|.+ +++.+..=..+|.+ .|.+.+++.+. +|.+=... .+| ++..
T Consensus 228 G~dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~----~l~~~~~~t~~-vvtvEE~~~~GG----lGs~ 298 (356)
T PLN02683 228 GKDVTIVAFSKMVGYALKAAEILAKEGISAEVINLRSIRPLDRD----TINASVRKTNR-LVTVEEGWPQHG----VGAE 298 (356)
T ss_pred CCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCccCHH----HHHHHHhhcCe-EEEEeCCCcCCC----HHHH
Confidence 6689999999842 23334445556765 33333211235654 55566666554 33333332 232 6666
Q ss_pred HHHHc
Q 025565 131 VAGLL 135 (251)
Q Consensus 131 lA~~L 135 (251)
+++.|
T Consensus 299 Va~~l 303 (356)
T PLN02683 299 ICASV 303 (356)
T ss_pred HHHHH
Confidence 66665
No 358
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=29.17 E-value=35 Score=27.40 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=21.7
Q ss_pred EEEEcceeecCCcCcHHHHHHHHcCCCccc
Q 025565 112 LIILGKQAIDDDCNQTGQMVAGLLSWPQGT 141 (251)
Q Consensus 112 lIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 141 (251)
++|+|...+|+ ..++-.||++||+|++.
T Consensus 5 i~~~G~~GsGK--st~~~~la~~lg~~~~d 32 (171)
T PRK03731 5 LFLVGARGCGK--TTVGMALAQALGYRFVD 32 (171)
T ss_pred EEEECCCCCCH--HHHHHHHHHHhCCCEEE
Confidence 67788766555 46899999999999873
No 359
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=29.12 E-value=75 Score=31.15 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceee
Q 025565 93 YPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASK 145 (251)
Q Consensus 93 d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 145 (251)
++.... .+++.+.+-+-=+|++|...........--++|++||+|+++....
T Consensus 197 ~~~~i~-~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~ 248 (564)
T PRK08155 197 DEESIR-DAAAMINAAKRPVLYLGGGVINSGAPARARELAEKAQLPTTMTLMA 248 (564)
T ss_pred CHHHHH-HHHHHHHhCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEcccc
Confidence 444443 3345554433337888866543334566688999999999975443
No 360
>PLN02371 phosphoglucosamine mutase family protein
Probab=29.10 E-value=3.3e+02 Score=27.10 Aligned_cols=44 Identities=11% Similarity=0.088 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHHhCCC-EEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 92 LYPLTVAKILKSLVEVEKPG-LIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 92 ~d~~a~a~~La~~ik~~~~d-lIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
.+...+...++..+-+..+. .|+....|+ .+--++|...|..++
T Consensus 350 i~gd~l~aLla~~ll~~~~g~~VV~~v~sS-----~~l~~ia~~~G~~v~ 394 (583)
T PLN02371 350 INRNRLIALMSAIVLEEHPGTTIVTDSVTS-----DGLTTFIEKKGGKHH 394 (583)
T ss_pred ECHHHHHHHHHHHHHHhCCCCEEEEecccc-----hhHHHHHHHcCCeEE
Confidence 47777778888766554444 566655443 367777888776553
No 361
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=29.02 E-value=3.4e+02 Score=22.69 Aligned_cols=57 Identities=5% Similarity=0.038 Sum_probs=38.0
Q ss_pred ceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCC----C------CCHH----HHHHHHHHHHHHhCCCEE
Q 025565 56 SEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG----Q------LYPL----TVAKILKSLVEVEKPGLI 113 (251)
Q Consensus 56 ~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~----~------~d~~----a~a~~La~~ik~~~~dlI 113 (251)
.+|..+-.|+- ..+.++.+..+|+.++.++++|. + ++.. .-+.++++.+++.+|++-
T Consensus 22 s~VlIiG~ggl-G~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~ 92 (197)
T cd01492 22 ARILLIGLKGL-GAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVK 92 (197)
T ss_pred CcEEEEcCCHH-HHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCE
Confidence 46777766653 36788999999999999998653 1 1212 235667777776666543
No 362
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=28.83 E-value=2.6e+02 Score=24.82 Aligned_cols=60 Identities=17% Similarity=0.098 Sum_probs=31.5
Q ss_pred CCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-----CCCEEEEcceeecCCcCcHHHHHHHHcCCC
Q 025565 78 MGADRGVHVEAAGQLYPLTVAKILKSLVEVE-----KPGLIILGKQAIDDDCNQTGQMVAGLLSWP 138 (251)
Q Consensus 78 ~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-----~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p 138 (251)
.|..+..+..++ ....+--+.++.+++++- +.|+++++.++.+......+.+++..||++
T Consensus 39 ~Gi~~r~~~~~~-~~~~~la~~A~~~al~~ag~~~~~Id~li~~~~~~~~~~~~~a~~l~~~lg~~ 103 (325)
T PRK12879 39 TGIKERRIAHVE-EYTSDLAIKAAERALARAGLDAEDIDLIIVATTTPDYLFPSTASQVQARLGIP 103 (325)
T ss_pred cCceEEEECCCC-CCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCChHHHHHHHHhCCC
Confidence 466665555322 112222233444444432 356777766655555556777777777765
No 363
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=28.80 E-value=4e+02 Score=23.39 Aligned_cols=72 Identities=11% Similarity=0.070 Sum_probs=43.8
Q ss_pred HHHHHHhhhhCCCceEEEEeeCCc----hhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEE-EEcc
Q 025565 43 LEEALRIKESGLASEVVAVSMGPA----QCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLI-ILGK 117 (251)
Q Consensus 43 le~A~~lae~~~g~~V~al~~G~~----~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlI-l~G~ 117 (251)
++...++++...+..+..++.-.+ ..+..++++.+.|+|-++..+. +.....-+.+.+++.+.+++ ++.-
T Consensus 75 ~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDl-----p~ee~~~~~~~~~~~gl~~i~lv~P 149 (256)
T TIGR00262 75 FELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADL-----PLEESGDLVEAAKKHGVKPIFLVAP 149 (256)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCC-----ChHHHHHHHHHHHHCCCcEEEEECC
Confidence 344555654313444444433332 2367899999999998887542 22345667778888888866 5555
Q ss_pred ee
Q 025565 118 QA 119 (251)
Q Consensus 118 ~s 119 (251)
++
T Consensus 150 ~T 151 (256)
T TIGR00262 150 NA 151 (256)
T ss_pred CC
Confidence 44
No 364
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=28.75 E-value=2.9e+02 Score=25.40 Aligned_cols=64 Identities=6% Similarity=0.082 Sum_probs=41.2
Q ss_pred CCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeec
Q 025565 54 LASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAID 121 (251)
Q Consensus 54 ~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d 121 (251)
++..+..+++-+..+.+++.+|.+.|..-++.++. .+.... ...+.++++ .+..+-|+|-.+.+
T Consensus 87 ~~~D~avI~VPa~~v~dai~Ea~~aGI~~~Viite--Gfpe~d-~~~l~~~~~-~~~g~rliGPNc~G 150 (317)
T PTZ00187 87 TGADASVIYVPPPHAASAIIEAIEAEIPLVVCITE--GIPQHD-MVKVKHALL-SQNKTRLIGPNCPG 150 (317)
T ss_pred cCCCEEEEecCHHHHHHHHHHHHHcCCCEEEEECC--CCchhh-HHHHHHHHh-hcCCCEEECCCCce
Confidence 34578888888888899999999999999999974 221111 222334443 23455555555433
No 365
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=28.65 E-value=4.4e+02 Score=24.87 Aligned_cols=67 Identities=19% Similarity=0.173 Sum_probs=39.6
Q ss_pred EEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCC-------------CCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcC
Q 025565 59 VAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQ-------------LYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCN 125 (251)
Q Consensus 59 ~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~-------------~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~ 125 (251)
.++..++..+-...+-+..+|.+-+..+..+.. .|.+..- +.++ ++|+++.+.
T Consensus 303 vai~~~~~~~~~l~~~L~ElG~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~e----~~~~--~~dllig~s-------- 368 (417)
T cd01966 303 VAIALEPDLLAALSSFLAEMGAEIVAAVATTDSPALEKLPAEEVVVGDLEDLE----DLAA--EADLLVTNS-------- 368 (417)
T ss_pred EEEEeCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHhCcccceEeCCHHHHH----Hhcc--cCCEEEEcc--------
Confidence 355555544455556666677776655542210 1333222 2343 399999554
Q ss_pred cHHHHHHHHcCCCcc
Q 025565 126 QTGQMVAGLLSWPQG 140 (251)
Q Consensus 126 ~v~~~lA~~Lg~p~v 140 (251)
-.-.+|.++|+|++
T Consensus 369 -~~~~~A~~~~ip~~ 382 (417)
T cd01966 369 -HGRQAAERLGIPLL 382 (417)
T ss_pred -hhHHHHHhcCCCEE
Confidence 56779999999996
No 366
>PRK09653 eutD phosphotransacetylase; Reviewed
Probab=28.64 E-value=4.4e+02 Score=24.02 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=26.1
Q ss_pred CHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHH-HHHCCC
Q 025565 36 NPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRT-GLAMGA 80 (251)
Q Consensus 36 n~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~-~la~Ga 80 (251)
...|...|++|.++.++ | -+..+.+|+++ .+++ +-.+|.
T Consensus 22 e~~d~~vl~Aa~~a~~e--g-~~~piLvG~~~---~I~~~~~~~g~ 61 (324)
T PRK09653 22 EGEDERVLKAAKRLQKE--G-LVEPILLGNPE---EIRAKAKELGL 61 (324)
T ss_pred CCCCHHHHHHHHHHHHC--C-CceEEEECCHH---HHHHHHHHcCC
Confidence 34588899999998876 2 35678899863 4444 444564
No 367
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=28.64 E-value=3.5e+02 Score=22.65 Aligned_cols=83 Identities=19% Similarity=0.037 Sum_probs=50.1
Q ss_pred CceEEEEeeC-Cc----------hhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh---CCCEEEEcceee
Q 025565 55 ASEVVAVSMG-PA----------QCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE---KPGLIILGKQAI 120 (251)
Q Consensus 55 g~~V~al~~G-~~----------~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~---~~dlIl~G~~s~ 120 (251)
|.+|+++++= +. ..+.+-+.|-++|..-.+. +.+. +.+.+.+.+.+.+++. +++.|++|.-.+
T Consensus 23 G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i-~~~~--~~e~~~~~l~~~l~~~~~~g~~~vv~G~i~s 99 (194)
T cd01994 23 GHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRI-EISG--EEEDEVEDLKELLRKLKEEGVDAVVFGAILS 99 (194)
T ss_pred CCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEE-eCCC--CchHHHHHHHHHHHHHHHcCCCEEEECcccc
Confidence 5677777643 11 2233446678899885433 3221 2334445555555443 699999999887
Q ss_pred cCCcCcHHHHHHHHcCCCccc
Q 025565 121 DDDCNQTGQMVAGLLSWPQGT 141 (251)
Q Consensus 121 d~~~~~v~~~lA~~Lg~p~vt 141 (251)
|. -+.---+++.++|+-.++
T Consensus 100 d~-~~~~~e~~~~~~gl~~~~ 119 (194)
T cd01994 100 EY-QRTRVERVCERLGLEPLA 119 (194)
T ss_pred HH-HHHHHHHHHHHcCCEEEe
Confidence 74 355666788888876553
No 368
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=28.51 E-value=4.6e+02 Score=25.26 Aligned_cols=73 Identities=15% Similarity=0.028 Sum_probs=48.2
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCE--------EEEEee-CCCCCHHHHHHHHHHHHHHhCCCE
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADR--------GVHVEA-AGQLYPLTVAKILKSLVEVEKPGL 112 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~--------vi~v~~-~~~~d~~a~a~~La~~ik~~~~dl 112 (251)
++..+...+++ |.++.-++ +.++.++.++.+-.+|.|- ..+++. +....++.....|-+.+++.+|+.
T Consensus 280 ~~~f~~~~~~~--ge~~~y~s-~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~ 356 (484)
T TIGR02655 280 VSKFLENACAN--KERAILFA-YEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPAR 356 (484)
T ss_pred HHHHHHHHHHC--CCeEEEEE-eeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCE
Confidence 34555555543 55665555 4455677888899999763 444442 224566778888888899889998
Q ss_pred EEEcc
Q 025565 113 IILGK 117 (251)
Q Consensus 113 Il~G~ 117 (251)
|++=+
T Consensus 357 vvIDs 361 (484)
T TIGR02655 357 IAIDS 361 (484)
T ss_pred EEEcC
Confidence 87744
No 369
>PRK06172 short chain dehydrogenase; Provisional
Probab=28.47 E-value=3.5e+02 Score=22.62 Aligned_cols=73 Identities=12% Similarity=0.107 Sum_probs=43.6
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcce
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGKQ 118 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~~ 118 (251)
..+.|.+|+++ |.+|+.+.-.+....+........|.+ +..+..| ..+.......+.++.++. ++|.|+....
T Consensus 20 G~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~D-~~~~~~i~~~~~~~~~~~g~id~li~~ag 93 (253)
T PRK06172 20 GRATALAFARE--GAKVVVADRDAAGGEETVALIREAGGE-ALFVACD-VTRDAEVKALVEQTIAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCCc-eEEEEcC-CCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 34567778775 667777665554434444444455543 4444433 456677777777766665 5798886553
No 370
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=28.40 E-value=37 Score=24.66 Aligned_cols=16 Identities=31% Similarity=0.630 Sum_probs=13.7
Q ss_pred hHHHHHHHhhhcCCcC
Q 025565 236 SVEELIDKLKNEARVI 251 (251)
Q Consensus 236 ~~~~l~~~L~~~~~~~ 251 (251)
++++|++.|.++||+|
T Consensus 48 ~a~eLv~FL~~rgKfi 63 (78)
T PF10678_consen 48 TADELVDFLEERGKFI 63 (78)
T ss_pred CHHHHHHHHHHcCCEe
Confidence 3889999999999875
No 371
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=28.38 E-value=2e+02 Score=25.38 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=16.6
Q ss_pred CceEEEEeeCCchhH-HHHHHHHHCCCCEEEEEe
Q 025565 55 ASEVVAVSMGPAQCV-DTLRTGLAMGADRGVHVE 87 (251)
Q Consensus 55 g~~V~al~~G~~~~~-~~l~~~la~GaD~vi~v~ 87 (251)
+.++..+..|..... -++.-+.++|+ +++.+.
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~ 175 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKADGI-KVINIV 175 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHcCC-EEEEEe
Confidence 445554434443322 34556677888 465554
No 372
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=28.37 E-value=3.1e+02 Score=25.72 Aligned_cols=86 Identities=17% Similarity=0.151 Sum_probs=49.7
Q ss_pred CCCHHh---HHHHHHHHHhhhhCCCceEEEEeeCC------c---hhHHHHHHHHHCCCCEEEEEeeCC-CCCHHHHHHH
Q 025565 34 SMNPFC---EIALEEALRIKESGLASEVVAVSMGP------A---QCVDTLRTGLAMGADRGVHVEAAG-QLYPLTVAKI 100 (251)
Q Consensus 34 ~in~~d---~~Ale~A~~lae~~~g~~V~al~~G~------~---~~~~~l~~~la~GaD~vi~v~~~~-~~d~~a~a~~ 100 (251)
..||+. .+-|..|.++- .+..+.++.-|+ + .--+..+.++..|+|-|+-+..-- .....-+|.-
T Consensus 9 eyNPfHnGH~y~i~~Ar~~~---~~d~~i~~msgdf~qRgepai~~k~~r~~~aL~~g~D~VIelP~~~s~q~a~~fa~~ 85 (358)
T COG1323 9 EYNPFHNGHQYHINKAREEF---KGDEIIAVMSGDFTQRGEPAIGHKWERKKMALEGGADLVIELPLERSGQGAPYFATR 85 (358)
T ss_pred ecCcccccHHHHHHHHHHhc---cCCceEEeeecchhhcCCCccccHHHHHhhhhhcCceEEEEcceEEecCCCchhhHH
Confidence 457766 66778887643 344555555553 1 112346779999999998765311 1122222333
Q ss_pred HHHHHHHhCCCEEEEcceeecC
Q 025565 101 LKSLVEVEKPGLIILGKQAIDD 122 (251)
Q Consensus 101 La~~ik~~~~dlIl~G~~s~d~ 122 (251)
=..++.+.++|-|++|+.+.|-
T Consensus 86 av~il~~l~~~~i~fgse~~~i 107 (358)
T COG1323 86 AVRILNALGGDDIAFGSPPMGI 107 (358)
T ss_pred HHHHHHhcCCCeEEEeCCCCch
Confidence 3344555678888888877443
No 373
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=28.31 E-value=4.6e+02 Score=23.92 Aligned_cols=94 Identities=20% Similarity=0.132 Sum_probs=67.0
Q ss_pred HHHHHHHHHhhhhCCCceEEEEeeCCch---------------hHHHHHHHHHCCCCEEEEEeeCC---CCCHHHHHHHH
Q 025565 40 EIALEEALRIKESGLASEVVAVSMGPAQ---------------CVDTLRTGLAMGADRGVHVEAAG---QLYPLTVAKIL 101 (251)
Q Consensus 40 ~~Ale~A~~lae~~~g~~V~al~~G~~~---------------~~~~l~~~la~GaD~vi~v~~~~---~~d~~a~a~~L 101 (251)
...++.|++.+++ .+..++++++-|.. ..+-++.+-.+|+|.++++.-+. ..++..+-.
T Consensus 32 q~ll~~a~~~a~~-~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~gvd~~~v~~F~~~fa~ls~~~Fv~-- 108 (304)
T COG0196 32 QKLLAQALEAAEK-RGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGYGVDALVVLDFDLEFANLSAEEFVE-- 108 (304)
T ss_pred HHHHHHHHHHHHH-hCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhcCCcEEEEEeCCHhHhhCCHHHHHH--
Confidence 4578999999988 67788999987531 34456678899999999988553 456776655
Q ss_pred HHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCC
Q 025565 102 KSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSW 137 (251)
Q Consensus 102 a~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~ 137 (251)
.+++..++.-|++|.-..=|..++-.+.+-..++-
T Consensus 109 -~lv~~l~~k~ivvG~DF~FGk~~~g~~~~L~~~~~ 143 (304)
T COG0196 109 -LLVEKLNVKHIVVGFDFRFGKGRQGNAELLRELGQ 143 (304)
T ss_pred -HHHhccCCcEEEEecccccCCCCCCCHHHHHHhcc
Confidence 46777899999999766544445555555555553
No 374
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=28.17 E-value=36 Score=33.43 Aligned_cols=49 Identities=22% Similarity=0.215 Sum_probs=30.5
Q ss_pred HHHHHHHHH-HHHh--CCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEEE
Q 025565 96 TVAKILKSL-VEVE--KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVL 148 (251)
Q Consensus 96 a~a~~La~~-ik~~--~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~ 148 (251)
.++.-++.. .++. .||+| .|+-| |++.+|.+||.+||+|+.+-.-+++-
T Consensus 385 ~fa~d~~~~i~~e~~~~PdlI-~GnYs---DgnlvA~LLs~~lgv~~~~iaHsLek 436 (550)
T PF00862_consen 385 EFADDAEREILAELQGKPDLI-IGNYS---DGNLVASLLSRKLGVTQCFIAHSLEK 436 (550)
T ss_dssp HHHHHHHHHHHHHHTS--SEE-EEEHH---HHHHHHHHHHHHHT-EEEEE-SS-HH
T ss_pred HHHHHHHHHHHHHhCCCCcEE-EeccC---cchHHHHHHHhhcCCceehhhhcccc
Confidence 444444433 3433 59975 57777 56789999999999999877777653
No 375
>PRK06181 short chain dehydrogenase; Provisional
Probab=28.15 E-value=3.7e+02 Score=22.68 Aligned_cols=72 Identities=8% Similarity=0.093 Sum_probs=43.6
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
..+.+.+|+++ |.+|+++.-.+...++...+....|. ++..+..| ..|...+..++.++.++. ++|.|+...
T Consensus 14 G~~la~~l~~~--g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D-l~~~~~~~~~~~~~~~~~~~id~vi~~a 86 (263)
T PRK06181 14 GRALAVRLARA--GAQLVLAARNETRLASLAQELADHGG-EALVVPTD-VSDAEACERLIEAAVARFGGIDILVNNA 86 (263)
T ss_pred HHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcc-CCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 34566667764 66888776554433444444545565 44444433 456777777777776665 589888664
No 376
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=28.00 E-value=3.5e+02 Score=23.83 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=8.0
Q ss_pred cHHHHHHHHcCCCccc
Q 025565 126 QTGQMVAGLLSWPQGT 141 (251)
Q Consensus 126 ~v~~~lA~~Lg~p~vt 141 (251)
...-+++...|+|...
T Consensus 107 ~~~~~~l~~~gip~p~ 122 (315)
T TIGR01205 107 LLTKLLWKALGLPTPD 122 (315)
T ss_pred HHHHHHHHHCCCCCCC
Confidence 3444555555555443
No 377
>PRK05876 short chain dehydrogenase; Provisional
Probab=27.98 E-value=4e+02 Score=23.05 Aligned_cols=71 Identities=11% Similarity=0.027 Sum_probs=42.5
Q ss_pred HHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 43 LEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 43 le~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
.+.|.+|+++ |.+|+.+.-..+..++...++-+.|.+ +..+..| -.|...+.+++.++.++. ++|+++...
T Consensus 20 ~ala~~La~~--G~~Vv~~~r~~~~l~~~~~~l~~~~~~-~~~~~~D-v~d~~~v~~~~~~~~~~~g~id~li~nA 91 (275)
T PRK05876 20 LATGTEFARR--GARVVLGDVDKPGLRQAVNHLRAEGFD-VHGVMCD-VRHREEVTHLADEAFRLLGHVDVVFSNA 91 (275)
T ss_pred HHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCe-EEEEeCC-CCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 4567777775 667766554443334444444445653 4444333 457777778877777765 579887644
No 378
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=27.96 E-value=2.4e+02 Score=27.04 Aligned_cols=75 Identities=23% Similarity=0.193 Sum_probs=40.3
Q ss_pred HHHHHHHHhhhhCCCceEEEEeeCCch-hHHHHHHHHHCCCCEEEEEeeCCCC-CHHHHHHHHH-------HHHHHh-CC
Q 025565 41 IALEEALRIKESGLASEVVAVSMGPAQ-CVDTLRTGLAMGADRGVHVEAAGQL-YPLTVAKILK-------SLVEVE-KP 110 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~~G~~~-~~~~l~~~la~GaD~vi~v~~~~~~-d~~a~a~~La-------~~ik~~-~~ 110 (251)
-|++.|.++-+. . ..-.++.+|-.. .+-.++.+.+.|+.+++.+. +.+ -+...|+-+. +..... ++
T Consensus 164 aAv~lA~~~~~~-L-~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaN--RT~erA~~La~~~~~~~~~l~el~~~l~~~ 239 (414)
T COG0373 164 AAVELAKRIFGS-L-KDKKVLVIGAGEMGELVAKHLAEKGVKKITIAN--RTLERAEELAKKLGAEAVALEELLEALAEA 239 (414)
T ss_pred HHHHHHHHHhcc-c-ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEc--CCHHHHHHHHHHhCCeeecHHHHHHhhhhC
Confidence 445555555432 1 123455666543 34567888889999988886 221 1222222222 222222 68
Q ss_pred CEEEEccee
Q 025565 111 GLIILGKQA 119 (251)
Q Consensus 111 dlIl~G~~s 119 (251)
|+|+.+..+
T Consensus 240 DvVissTsa 248 (414)
T COG0373 240 DVVISSTSA 248 (414)
T ss_pred CEEEEecCC
Confidence 999887654
No 379
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.91 E-value=3.5e+02 Score=22.40 Aligned_cols=73 Identities=12% Similarity=0.011 Sum_probs=43.7
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcce
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGKQ 118 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~~ 118 (251)
....+.+|+++ |.+|+.+.-.+...++...+.-..|. ++..+..| ..+...+..++.++.++. +.|.|+....
T Consensus 20 G~~l~~~L~~~--G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D-~~~~~~~~~~~~~~~~~~~~id~vi~~ag 93 (239)
T PRK07666 20 GRAVAIALAKE--GVNVGLLARTEENLKAVAEEVEAYGV-KVVIATAD-VSDYEEVTAAIEQLKNELGSIDILINNAG 93 (239)
T ss_pred HHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhCC-eEEEEECC-CCCHHHHHHHHHHHHHHcCCccEEEEcCc
Confidence 35566677764 66887776655443444444444443 45544433 456777777777766554 6798887653
No 380
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=27.78 E-value=3.7e+02 Score=22.63 Aligned_cols=52 Identities=12% Similarity=-0.031 Sum_probs=30.9
Q ss_pred CCHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEe
Q 025565 35 MNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVE 87 (251)
Q Consensus 35 in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~ 87 (251)
-|||-...++...+.+++ .|.++.....+........+.+.+.++|-++...
T Consensus 21 ~~~~~~~~~~gi~~~~~~-~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~ 72 (275)
T cd06295 21 SDPFFLSLLGGIADALAE-RGYDLLLSFVSSPDRDWLARYLASGRADGVILIG 72 (275)
T ss_pred CCchHHHHHHHHHHHHHH-cCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeC
Confidence 467777766666666665 5777766665543222233334457788777654
No 381
>PRK00035 hemH ferrochelatase; Reviewed
Probab=27.71 E-value=3.4e+02 Score=24.54 Aligned_cols=30 Identities=20% Similarity=0.118 Sum_probs=26.1
Q ss_pred EEEeeCCchhHHHHHHHHHCCCCEEEEEee
Q 025565 59 VAVSMGPAQCVDTLRTGLAMGADRGVHVEA 88 (251)
Q Consensus 59 ~al~~G~~~~~~~l~~~la~GaD~vi~v~~ 88 (251)
.++-.|++..+++++++.+.|+++++++.-
T Consensus 98 ~am~y~~P~i~eal~~l~~~G~~~IivlPL 127 (333)
T PRK00035 98 LGMRYWNPSIEEALEALKADGVDRIVVLPL 127 (333)
T ss_pred EeecCCCCCHHHHHHHHHhcCCCEEEEEEC
Confidence 456778888899999999999999999874
No 382
>PLN00142 sucrose synthase
Probab=27.54 E-value=81 Score=32.83 Aligned_cols=49 Identities=31% Similarity=0.201 Sum_probs=35.6
Q ss_pred HHHHHHHHHHH-HHh--CCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEE
Q 025565 95 LTVAKILKSLV-EVE--KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVV 147 (251)
Q Consensus 95 ~a~a~~La~~i-k~~--~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~ 147 (251)
..++..+.+.+ ++. .||+|..- ..+++.+|..+|.+||+|++.-.=++.
T Consensus 391 ~~f~~~~~~~~~~~~~~~PDlIHaH----Ywdsg~vA~~La~~lgVP~v~T~HsL~ 442 (815)
T PLN00142 391 ETFAEDAASEILAELQGKPDLIIGN----YSDGNLVASLLAHKLGVTQCTIAHALE 442 (815)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEC----CccHHHHHHHHHHHhCCCEEEEcccch
Confidence 35565666554 333 49999854 347789999999999999987666664
No 383
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=27.53 E-value=91 Score=31.49 Aligned_cols=53 Identities=17% Similarity=0.113 Sum_probs=31.7
Q ss_pred hHHHHHHHHHCCCCEEEEEeeCC-CCCH-HHHHHHHHHHHHHh-CCCEEEEcceee
Q 025565 68 CVDTLRTGLAMGADRGVHVEAAG-QLYP-LTVAKILKSLVEVE-KPGLIILGKQAI 120 (251)
Q Consensus 68 ~~~~l~~~la~GaD~vi~v~~~~-~~d~-~a~a~~La~~ik~~-~~dlIl~G~~s~ 120 (251)
++..+.++-+.|||-+|.+.+.. ..+. ...+.-.+..+.+. +.|+||.|++-.
T Consensus 207 a~~~v~~Lk~~gaDvII~LsH~G~~~d~~~~~aen~~~~l~~v~gID~Il~GHsH~ 262 (649)
T PRK09420 207 ARKYVPEMKEKGADIVVAIPHSGISADPYKAMAENSVYYLSEVPGIDAIMFGHSHA 262 (649)
T ss_pred HHHHHHHHHHcCCCEEEEEecCCcCCCCccccccchhHHHhcCCCCCEEEeCCCCc
Confidence 45566667778999999998643 1121 11221112223343 799999999654
No 384
>PF11548 Receptor_IA-2: Protein-tyrosine phosphatase receptor IA-2; InterPro: IPR021613 IA-2 is a protein-tyrosine phosphatase receptor that upon exocytosis, the cytoplasmic domain is cleaved and moves to the nucleus where it enhances transcription of the insulin gene. The mature exodomain of IA-2 participates in adhesion to the extracellular matrix and is self-proteolyzed in vitro by reactive oxygen species which may be a new shedding mechanism. ; PDB: 2QT7_B 3N01_B 3N4W_B 3NG8_A.
Probab=27.15 E-value=63 Score=24.21 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=26.8
Q ss_pred CCCEEEEcceeec-CCcCcHHHHHHHHcCCCcccceeeEEEecCCCeEE
Q 025565 109 KPGLIILGKQAID-DDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAM 156 (251)
Q Consensus 109 ~~dlIl~G~~s~d-~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~l~ 156 (251)
.|-+|++++.... .+|.++--.||++|++|.- .-.++++. +..++
T Consensus 3 ~yGYIvt~nd~ls~~~G~~l~~~la~~l~l~s~-~F~~i~V~--g~avT 48 (91)
T PF11548_consen 3 EYGYIVTGNDPLSWDEGSRLMEKLAELLHLPSS-SFINISVV--GPAVT 48 (91)
T ss_dssp -EEEEEES-TT--HHHHHHHHHHHHHHHTS-GG-GEEEEEEE--TTEEE
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHHhCCCcc-cceeeeec--CceEE
Confidence 4567788754432 2667888999999999953 44555555 44433
No 385
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=27.07 E-value=2.2e+02 Score=22.04 Aligned_cols=72 Identities=15% Similarity=-0.046 Sum_probs=41.5
Q ss_pred HHHHHhhhhCCCceEEEEeeC-------------CchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh--
Q 025565 44 EEALRIKESGLASEVVAVSMG-------------PAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-- 108 (251)
Q Consensus 44 e~A~~lae~~~g~~V~al~~G-------------~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-- 108 (251)
..+.++++++++..|..-.+. -+...+++.++.+.|++++++...- -+....+ .-|-+.+++.
T Consensus 21 ~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~-l~~G~e~-~di~~~v~~~~~ 98 (127)
T cd03412 21 AIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLH-IIPGEEY-EKLKREVDAFKK 98 (127)
T ss_pred HHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCe-eECcHHH-HHHHHHHHHHhC
Confidence 345556666566566543332 3456889999999999999998732 1122234 3444444443
Q ss_pred CCCEEEEcc
Q 025565 109 KPGLIILGK 117 (251)
Q Consensus 109 ~~dlIl~G~ 117 (251)
+.+=|.+|.
T Consensus 99 ~~~~i~~g~ 107 (127)
T cd03412 99 GFKKIKLGR 107 (127)
T ss_pred CCceEEEcc
Confidence 333455554
No 386
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=26.86 E-value=4.9e+02 Score=24.50 Aligned_cols=133 Identities=16% Similarity=0.134 Sum_probs=74.8
Q ss_pred CccCCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCch----hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHH
Q 025565 31 VKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQ----CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVE 106 (251)
Q Consensus 31 ~~~~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~----~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik 106 (251)
++.+-+|.| |++||+++++.+|+=+.+|=+. ....+.++...|.+...++... -..+. ++..+++
T Consensus 118 VriVYSpld------Al~iA~~nPdk~VVF~avGFETTaP~~A~~i~~a~~~~~~Nfsvl~~h-kl~PP----a~~~ll~ 186 (369)
T TIGR00075 118 VRIVYSPMD------ALKIAKENPDRKVVFFAIGFETTAPTTASTLLSAKAEDINNFFFLSAH-RLVPP----AVEALLE 186 (369)
T ss_pred EEEEeCHHH------HHHHHHHCCCCeEEEEecCchhccHHHHHHHHHHHHcCCCcEEEEEec-cccHH----HHHHHHc
Confidence 344556655 3444555567788888888653 2335677777888888877643 22333 4444444
Q ss_pred H--hCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEEEecC-CCeEEEEEEeCCeEEEEEECCCEEE
Q 025565 107 V--EKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKE-KQLAMVEREVDGGLETLELDLPAVI 176 (251)
Q Consensus 107 ~--~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~-~~~l~~~R~~~gG~~~~~~~~P~vv 176 (251)
. .+.|-+|++..-+---|..-=--+++..+.|++ |..++..+= .+-+.+.|++..|...++-..+-+|
T Consensus 187 ~~~~~idgfi~PGHVs~I~G~~~y~~l~~~y~~P~V--VaGFEp~DiL~~i~~ll~qi~~g~~~v~N~Y~R~V 257 (369)
T TIGR00075 187 NPAVQIDAFLAPGHVSTIIGAKPYAPIAEKYKIPIV--IAGFEPVDILQAIYMLLKQAISGEAKVENQYKRAV 257 (369)
T ss_pred CCCCCccEEEecCEEEEEeccchhHHHHHHcCCCeE--EeccCHHHHHHHHHHHHHHHHCCCceEEEeeceee
Confidence 3 256877777665554445566678888888875 444442100 1223344455555544444444343
No 387
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=26.85 E-value=2.5e+02 Score=20.33 Aligned_cols=50 Identities=28% Similarity=0.197 Sum_probs=34.2
Q ss_pred HhHHHHHHHHHhhhhCCCceEE-E-EeeCCchhHHHHHHHHHCCCCEEEEEe
Q 025565 38 FCEIALEEALRIKESGLASEVV-A-VSMGPAQCVDTLRTGLAMGADRGVHVE 87 (251)
Q Consensus 38 ~d~~Ale~A~~lae~~~g~~V~-a-l~~G~~~~~~~l~~~la~GaD~vi~v~ 87 (251)
.....-+.+.++++..++..|. + +....+...+.++++.+.|+++++++.
T Consensus 14 ~~~~~~~l~~~l~~~~~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vvP 65 (101)
T cd03416 14 AAEALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIVVVP 65 (101)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 3444556677777763344554 3 233356678899999999999999986
No 388
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=26.83 E-value=3.8e+02 Score=22.41 Aligned_cols=51 Identities=10% Similarity=-0.019 Sum_probs=31.1
Q ss_pred CHHhHHHHHHHHHhhhhCCCceEEEEeeCCch--hHHHHHHHHHCCCCEEEEEe
Q 025565 36 NPFCEIALEEALRIKESGLASEVVAVSMGPAQ--CVDTLRTGLAMGADRGVHVE 87 (251)
Q Consensus 36 n~~d~~Ale~A~~lae~~~g~~V~al~~G~~~--~~~~l~~~la~GaD~vi~v~ 87 (251)
|||-...+....+.++. .|.++......... ..+.++.+..+++|-+++..
T Consensus 11 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~ 63 (264)
T cd06274 11 NRSFARIAKRLEALARE-RGYQLLIACSDDDPETERETVETLIARQVDALIVAG 63 (264)
T ss_pred CchHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 56666666555555555 56676665553321 23456778888888777765
No 389
>PRK05858 hypothetical protein; Provisional
Probab=26.75 E-value=77 Score=30.91 Aligned_cols=53 Identities=15% Similarity=0.063 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceee
Q 025565 92 LYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASK 145 (251)
Q Consensus 92 ~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 145 (251)
.++..+.++ ++.+.+-+.=+|++|......+....--++|++||+|+++...+
T Consensus 188 ~~~~~i~~~-~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~ 240 (542)
T PRK05858 188 PDPDALARA-AGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMNGMG 240 (542)
T ss_pred CCHHHHHHH-HHHHHhCCCcEEEECCCccccChHHHHHHHHHHhCCCEEEcCCc
Confidence 355555444 45555545556677775543344556678999999999977655
No 390
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=26.61 E-value=6.1e+02 Score=24.71 Aligned_cols=74 Identities=15% Similarity=0.156 Sum_probs=36.0
Q ss_pred CceEEEEeeCCchhHHHH-HHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHH
Q 025565 55 ASEVVAVSMGPAQCVDTL-RTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAG 133 (251)
Q Consensus 55 g~~V~al~~G~~~~~~~l-~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~ 133 (251)
|-+++++-+=+.-..++. +.|+..|+-=.-.+..+. +.. -| +.+++..||+||+-.-. |+......-..|.
T Consensus 72 GLkmvv~Glv~~~TaeAAk~AAlgAGA~V~~~~a~~l--~~~----~l-~~I~~~~PDIILLaGGt-DGG~~e~~l~NA~ 143 (463)
T TIGR01319 72 GLAMAAIGLVPEITAEAAKRAAHGAGAKIANVYAYDL--NNK----DI-EAIEESNLDIILFAGGT-DGGEEECGIHNAK 143 (463)
T ss_pred ChheEEEeccchhhHHHHHHHHhcCCcEEEEEEeecC--CHH----HH-HHHhhcCCCEEEEeCCc-CCCchHHHHHHHH
Confidence 446666655554433333 445566655433343221 111 12 22344578876665544 3444556566665
Q ss_pred HcC
Q 025565 134 LLS 136 (251)
Q Consensus 134 ~Lg 136 (251)
+|.
T Consensus 144 ~La 146 (463)
T TIGR01319 144 MLA 146 (463)
T ss_pred HHH
Confidence 543
No 391
>PRK00915 2-isopropylmalate synthase; Validated
Probab=26.46 E-value=6.2e+02 Score=24.74 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=41.3
Q ss_pred hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhC-C-CEEEEcceeecCCcCcHHHHHHHH
Q 025565 68 CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEK-P-GLIILGKQAIDDDCNQTGQMVAGL 134 (251)
Q Consensus 68 ~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~-~-dlIl~G~~s~d~~~~~v~~~lA~~ 134 (251)
..+.++.+..+|+|++.+.+.-....|..+...+..+.+..+ . ++.| |-..-+..+-.++--+|+.
T Consensus 151 l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l-~~H~HND~GlAvANslaAv 218 (513)
T PRK00915 151 LCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAII-SVHCHNDLGLAVANSLAAV 218 (513)
T ss_pred HHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceE-EEEecCCCCHHHHHHHHHH
Confidence 445677888999998877764446789999999888876653 1 2333 3333232334455555443
No 392
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=26.39 E-value=3.3e+02 Score=21.55 Aligned_cols=71 Identities=20% Similarity=0.163 Sum_probs=47.1
Q ss_pred CCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCch------------hHHHHHHHHHCC-CCEEEEEeeCCCCCHHHHHHH
Q 025565 34 SMNPFCEIALEEALRIKESGLASEVVAVSMGPAQ------------CVDTLRTGLAMG-ADRGVHVEAAGQLYPLTVAKI 100 (251)
Q Consensus 34 ~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~------------~~~~l~~~la~G-aD~vi~v~~~~~~d~~a~a~~ 100 (251)
.++.=-...|+.|+++++. .+++++.-+.. .++-+..+.++| +|.++.. + ..+++.
T Consensus 22 gvH~GH~~ll~~a~~~~~~----~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f--~-~~~~~~---- 90 (144)
T TIGR02199 22 ILHAGHVSYLQQARALGDR----LVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIF--D-EDTPEE---- 90 (144)
T ss_pred ccCHHHHHHHHHHHHhCCc----cEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEEC--C-CCCHHH----
Confidence 4667677889999888763 36666554421 144456677885 9998873 2 334443
Q ss_pred HHHHHHHhCCCEEEEcce
Q 025565 101 LKSLVEVEKPGLIILGKQ 118 (251)
Q Consensus 101 La~~ik~~~~dlIl~G~~ 118 (251)
.++..+++.|++|.-
T Consensus 91 ---fi~~l~~~~vv~G~d 105 (144)
T TIGR02199 91 ---LIGELKPDILVKGGD 105 (144)
T ss_pred ---HHHHhCCCEEEECCC
Confidence 345789999999984
No 393
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=26.37 E-value=45 Score=30.53 Aligned_cols=28 Identities=18% Similarity=0.030 Sum_probs=24.4
Q ss_pred CEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 111 GLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 111 dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
-++++|-|++|+. +++-.||.++|.+.|
T Consensus 5 ~i~I~GPTAsGKT--~lai~LAk~~~~eII 32 (308)
T COG0324 5 LIVIAGPTASGKT--ALAIALAKRLGGEII 32 (308)
T ss_pred EEEEECCCCcCHH--HHHHHHHHHcCCcEE
Confidence 4788999998875 799999999999877
No 394
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=26.30 E-value=2.7e+02 Score=20.48 Aligned_cols=76 Identities=18% Similarity=0.127 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhhhhCCCceEEEEee-CCchhHHHHHHHHHCCCCEEEEEeeCCC-CCHHHHHHHHHHHHHHhCCCEEEE
Q 025565 39 CEIALEEALRIKESGLASEVVAVSM-GPAQCVDTLRTGLAMGADRGVHVEAAGQ-LYPLTVAKILKSLVEVEKPGLIIL 115 (251)
Q Consensus 39 d~~Ale~A~~lae~~~g~~V~al~~-G~~~~~~~l~~~la~GaD~vi~v~~~~~-~d~~a~a~~La~~ik~~~~dlIl~ 115 (251)
....++.+.++... .|.++..+.. ++...++.++.+-..++|-++.=..... ............+++..+.+++++
T Consensus 54 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 54 ARKLLRQAERIAAS-LGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred HHHHHHHHHHHhhh-cCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHhcCCCCEEEe
Confidence 34556677777665 5677776664 4433456667777889998877654332 222233445555666666666653
No 395
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=26.22 E-value=3.9e+02 Score=24.10 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=11.0
Q ss_pred HHHHHHHHHhCCCEEEEcc
Q 025565 99 KILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 99 ~~La~~ik~~~~dlIl~G~ 117 (251)
..+.+.+++.+||+|++-+
T Consensus 159 ~~~~~~l~~~~~Dlivlag 177 (289)
T PRK13010 159 AQILDLIETSGAELVVLAR 177 (289)
T ss_pred HHHHHHHHHhCCCEEEEeh
Confidence 3455556666666666543
No 396
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=26.13 E-value=4.8e+02 Score=23.66 Aligned_cols=102 Identities=18% Similarity=0.160 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHhCCCEEE-EcceeecCCcCcHHHHHHHHcCCCcccceeeEEEecCCCeEEEEEEeCCeEEEEEE--
Q 025565 94 PLTVAKILKSLVEVEKPGLII-LGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLEL-- 170 (251)
Q Consensus 94 ~~a~a~~La~~ik~~~~dlIl-~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~l~~~R~~~gG~~~~~~-- 170 (251)
+......+++..++.++|.|+ +|+.| .-+++-.+|.+++.|+++--+...-.+......++.. +.+..+..
T Consensus 62 ~~~~v~~~~~~~~~~~~d~IIaiGGGs----~iD~aK~ia~~~~~p~i~IPTtatgse~t~~avit~~--g~K~~i~~~~ 135 (337)
T cd08177 62 PVEVTEAAVAAAREAGADGIVAIGGGS----TIDLAKAIALRTGLPIIAIPTTLSGSEMTPIAGVTEN--GVKTTGRDPE 135 (337)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcH----HHHHHHHHHHHhcCCEEEEcCCchhhhhcCeEEEecC--CceeEeeCcc
Confidence 344666677777778999887 56533 2348888888889998765444321110112223332 44554443
Q ss_pred CCCEEEEEeCCCCC--CCCCChHHHHHhcCCCc
Q 025565 171 DLPAVITTDLRLNQ--PRYATLPNIMKAKSKPI 201 (251)
Q Consensus 171 ~~P~vvtv~~~~~~--pr~p~l~~i~~A~k~~i 201 (251)
-.|.++-+.+.... |+.-.....|.|-.+-+
T Consensus 136 ~~P~~~i~Dp~l~~~~P~~~~~~~g~Dal~h~i 168 (337)
T cd08177 136 VLPRTVIYDPELTLTTPRRLWLSSGIRAIDHAV 168 (337)
T ss_pred ccCCEEEEChHHhcCCCHHHHHHHHHHHHHHHH
Confidence 35877777776543 32222333455544433
No 397
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=26.06 E-value=2.9e+02 Score=26.28 Aligned_cols=45 Identities=16% Similarity=0.088 Sum_probs=25.7
Q ss_pred HHHHHHHHhhhhCCCceEEEEeeCCchh-HHHHHHHHHCCCCEEEEEe
Q 025565 41 IALEEALRIKESGLASEVVAVSMGPAQC-VDTLRTGLAMGADRGVHVE 87 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~~G~~~~-~~~l~~~la~GaD~vi~v~ 87 (251)
-|++.|.++-....|.+ ++.+|.... ...++.+...|+.++++++
T Consensus 167 ~Av~la~~~~~~l~~kk--vlviGaG~~a~~va~~L~~~g~~~I~V~n 212 (414)
T PRK13940 167 SAITLAKRQLDNISSKN--VLIIGAGQTGELLFRHVTALAPKQIMLAN 212 (414)
T ss_pred HHHHHHHHHhcCccCCE--EEEEcCcHHHHHHHHHHHHcCCCEEEEEC
Confidence 44555544433212333 455555443 4456777788998888876
No 398
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.03 E-value=4.2e+02 Score=22.62 Aligned_cols=91 Identities=7% Similarity=0.035 Sum_probs=56.1
Q ss_pred CCHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEE
Q 025565 35 MNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLII 114 (251)
Q Consensus 35 in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl 114 (251)
-|||....+....+.+++ .|.++....-.. ..+.++.+...++|-+++...+.. + ..+.. +++.+.-+|+
T Consensus 15 ~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~--~~~~~~~~~~~~~dgiii~~~~~~-~-----~~~~~-~~~~~ipvV~ 84 (283)
T cd06279 15 SDPVASQFLAGVAEVLDA-AGVNLLLLPASS--EDSDSALVVSALVDGFIVYGVPRD-D-----PLVAA-LLRRGLPVVV 84 (283)
T ss_pred cCccHHHHHHHHHHHHHH-CCCEEEEecCcc--HHHHHHHHHhcCCCEEEEeCCCCC-h-----HHHHH-HHHcCCCEEE
Confidence 388888888877777777 677877665543 246778889999998888653211 1 12333 3444656777
Q ss_pred Eccee------ecCCcCcHHHHHHHHc
Q 025565 115 LGKQA------IDDDCNQTGQMVAGLL 135 (251)
Q Consensus 115 ~G~~s------~d~~~~~v~~~lA~~L 135 (251)
++... .+.+..+.+-.++++|
T Consensus 85 ~~~~~~~~~~~v~~d~~~~g~~~~~~L 111 (283)
T cd06279 85 VDQPLPPGVPSVGIDDRAAAREAARHL 111 (283)
T ss_pred EecCCCCCCCEEeeCcHHHHHHHHHHH
Confidence 76532 2334445555555444
No 399
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=26.02 E-value=5.5e+02 Score=26.08 Aligned_cols=49 Identities=16% Similarity=0.086 Sum_probs=33.0
Q ss_pred HHHHCCCC--EEEEEeeCC----C----CCHHHHHHHHHHHHHHhCCCEEEEcceeecC
Q 025565 74 TGLAMGAD--RGVHVEAAG----Q----LYPLTVAKILKSLVEVEKPGLIILGKQAIDD 122 (251)
Q Consensus 74 ~~la~GaD--~vi~v~~~~----~----~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~ 122 (251)
.+-.+|++ .++++..+. . ...+.....+.+++++.+|++|++.....|.
T Consensus 477 A~~~lGv~~~~v~fL~lP~y~~g~~~~~p~~~~~v~~i~~li~~~kP~~V~~~~~~~D~ 535 (652)
T PRK02122 477 ACRYVGLPDEHVHFLDLPFYETGTVRKNPIGEADVEIVMDLLEEIKPHQIFVAGDLADP 535 (652)
T ss_pred HHHhcCCCccceEECCCCCccCCccccCcccHHHHHHHHHHHHHcCCCEEEECCCCCCC
Confidence 44456987 677776331 0 1234667889999999999999986433344
No 400
>PRK06217 hypothetical protein; Validated
Probab=26.00 E-value=40 Score=27.63 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=21.3
Q ss_pred EEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 112 LIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 112 lIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
++|+|...+|+. .++-+||++||+|++
T Consensus 4 I~i~G~~GsGKS--Tla~~L~~~l~~~~~ 30 (183)
T PRK06217 4 IHITGASGSGTT--TLGAALAERLDIPHL 30 (183)
T ss_pred EEEECCCCCCHH--HHHHHHHHHcCCcEE
Confidence 678887766653 589999999998865
No 401
>PRK07062 short chain dehydrogenase; Provisional
Probab=25.95 E-value=4.1e+02 Score=22.47 Aligned_cols=72 Identities=10% Similarity=-0.006 Sum_probs=42.5
Q ss_pred HHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHC-CCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 43 LEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAM-GADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 43 le~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~-GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
.+.|.++++. |.+|+.+.-.++..++..+++... +-.++..+..| -.|...+.+.+.++.++. ..|+++...
T Consensus 22 ~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~~~~~~~~~~g~id~li~~A 95 (265)
T PRK07062 22 LATVELLLEA--GASVAICGRDEERLASAEARLREKFPGARLLAARCD-VLDEADVAAFAAAVEARFGGVDMLVNNA 95 (265)
T ss_pred HHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEec-CCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 4567777764 678776665544333334444333 22356555533 457777777777766665 578887654
No 402
>PLN02591 tryptophan synthase
Probab=25.92 E-value=4.6e+02 Score=23.10 Aligned_cols=47 Identities=17% Similarity=0.131 Sum_probs=34.9
Q ss_pred hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEccee
Q 025565 68 CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQA 119 (251)
Q Consensus 68 ~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s 119 (251)
.+..+++|.+.|+|-+++.+- |..-+.-+.+.+++.+.++|+|=.-+
T Consensus 95 ~~~F~~~~~~aGv~GviipDL-----P~ee~~~~~~~~~~~gl~~I~lv~Pt 141 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPDL-----PLEETEALRAEAAKNGIELVLLTTPT 141 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCCC-----CHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 467899999999999888642 23445567777888899988876433
No 403
>PRK14072 6-phosphofructokinase; Provisional
Probab=25.81 E-value=3.8e+02 Score=25.55 Aligned_cols=62 Identities=11% Similarity=0.005 Sum_probs=43.9
Q ss_pred eEEEE-eeCCchhHHHHHHHHH-----CCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceee
Q 025565 57 EVVAV-SMGPAQCVDTLRTGLA-----MGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAI 120 (251)
Q Consensus 57 ~V~al-~~G~~~~~~~l~~~la-----~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~ 120 (251)
.|..| +||-..--=++..+++ -|+|-+++=+ ..++.+.+.+.|.+..++.++-+|+++....
T Consensus 181 Rv~iVEvMGR~aG~LAl~a~lA~~~~~~gad~iliPE--~~~~~~~~~~~i~~~~~~~~~~ivvVaEG~~ 248 (416)
T PRK14072 181 KVFILEVMGRHAGWLAAAAALAKQNPDDAPHLIYLPE--RPFDEEKFLADVRAIVKRYGYCVVVVSEGIR 248 (416)
T ss_pred eEEEEEEeCcchhHHHHHHhhccccCCCCccEEEccC--CCCCHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 46544 8997532235677888 7888777633 2578888888888877777889999977653
No 404
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=25.76 E-value=2.2e+02 Score=30.44 Aligned_cols=67 Identities=24% Similarity=0.282 Sum_probs=43.4
Q ss_pred CHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 025565 36 NPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIIL 115 (251)
Q Consensus 36 n~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~ 115 (251)
..+|.-.......|++. |.+|+.+...+.. ...... -+|+.|... .+. ..+.++++++++|.|+.
T Consensus 23 ~e~d~sg~q~~kalke~--G~~vi~v~~np~~----~~~~~~-~aD~~y~~p----~~~----~~v~~ii~~e~~DaIlp 87 (1050)
T TIGR01369 23 AEFDYSGSQACKALKEE--GYRVILVNSNPAT----IMTDPE-MADKVYIEP----LTP----EAVEKIIEKERPDAILP 87 (1050)
T ss_pred hcccchHHHHHHHHHHc--CCEEEEEecchhh----ccCChh-cCCEEEECC----CCH----HHHHHHHHHhCCCEEEE
Confidence 35676677777777774 7888888777632 111111 278887742 233 45677888889999997
Q ss_pred cc
Q 025565 116 GK 117 (251)
Q Consensus 116 G~ 117 (251)
+-
T Consensus 88 ~~ 89 (1050)
T TIGR01369 88 TF 89 (1050)
T ss_pred CC
Confidence 53
No 405
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=25.73 E-value=4.3e+02 Score=22.68 Aligned_cols=72 Identities=21% Similarity=0.147 Sum_probs=45.7
Q ss_pred CCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeC-CCCCHHHHHHHHHHHHHH
Q 025565 34 SMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAA-GQLYPLTVAKILKSLVEV 107 (251)
Q Consensus 34 ~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~-~~~d~~a~a~~La~~ik~ 107 (251)
...|...+-+...+++.++ .|..+.....|+-. .+.++.+.+.|||-++..+.= ...|+....+.+.+.+++
T Consensus 145 ~fi~~~lekI~~l~~~~~~-~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~~~~ 217 (220)
T PRK08883 145 SFIPHTLDKLRAVRKMIDE-SGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAELAK 217 (220)
T ss_pred eecHhHHHHHHHHHHHHHh-cCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHHh
Confidence 3456666678777777664 34445555577755 667899999999988776520 123555555555555443
No 406
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=25.65 E-value=2.5e+02 Score=25.24 Aligned_cols=91 Identities=8% Similarity=-0.035 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCC---EEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 025565 39 CEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGAD---RGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIIL 115 (251)
Q Consensus 39 d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD---~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~ 115 (251)
....++.+..|.+.+.|.+++.++-+.......++. .+.- ..+.+. ..........|.+.+++.+||+|.+
T Consensus 17 e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~Dii~~ 90 (359)
T PRK09922 17 ETVISNVINTFEESKINCEMFFFCRNDKMDKAWLKE---IKYAQSFSNIKLS---FLRRAKHVYNFSKWLKETQPDIVIC 90 (359)
T ss_pred hHHHHHHHHHhhhcCcceeEEEEecCCCCChHHHHh---cchhcccccchhh---hhcccHHHHHHHHHHHhcCCCEEEE
Confidence 456677888888753367887777655421222222 1210 001111 0111233466778899999999998
Q ss_pred cceeecCCcCcHHHHHHHHcCCCc
Q 025565 116 GKQAIDDDCNQTGQMVAGLLSWPQ 139 (251)
Q Consensus 116 G~~s~d~~~~~v~~~lA~~Lg~p~ 139 (251)
..... ..++..++...+.|+
T Consensus 91 ~~~~~----~~~~~~~~~~~~~~~ 110 (359)
T PRK09922 91 IDVIS----CLYANKARKKSGKQF 110 (359)
T ss_pred cCHHH----HHHHHHHHHHhCCCC
Confidence 75321 124444455567665
No 407
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=25.63 E-value=4.5e+02 Score=22.88 Aligned_cols=82 Identities=13% Similarity=0.027 Sum_probs=53.0
Q ss_pred CceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHH
Q 025565 55 ASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGL 134 (251)
Q Consensus 55 g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~ 134 (251)
+.+|-+++--++......++-..++.+-.+...++-..+... -..-|+.+++.+.|+|++=+- |++.+.--+++..
T Consensus 125 ~~~vGVivP~~eQ~~~~~~kW~~l~~~~~~a~asPy~~~~~~-l~~Aa~~L~~~gadlIvLDCm---GYt~~~r~~~~~~ 200 (221)
T PF07302_consen 125 GHQVGVIVPLPEQIAQQAEKWQPLGNPVVVAAASPYEGDEEE-LAAAARELAEQGADLIVLDCM---GYTQEMRDIVQRA 200 (221)
T ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCCeEEEEeCCCCCCHHH-HHHHHHHHHhcCCCEEEEECC---CCCHHHHHHHHHH
Confidence 346666666655555555666667766666655432123332 233344556669999999775 3778888999999
Q ss_pred cCCCcc
Q 025565 135 LSWPQG 140 (251)
Q Consensus 135 Lg~p~v 140 (251)
+|.|.+
T Consensus 201 ~g~PVl 206 (221)
T PF07302_consen 201 LGKPVL 206 (221)
T ss_pred hCCCEE
Confidence 999976
No 408
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=25.57 E-value=4e+02 Score=22.24 Aligned_cols=76 Identities=12% Similarity=0.069 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCC-CCCHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 40 EIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG-QLYPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 40 ~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~-~~d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
.-....+++|++. |.+|+++.--+....+...++...+.+++..+..|- ..+.......+..+.+.. .+|.|+...
T Consensus 23 ~iG~~la~~l~~~--G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~id~vi~~A 100 (247)
T PRK08945 23 GIGREAALTYARH--GATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQFGRLDGVLHNA 100 (247)
T ss_pred hHHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 3445677778875 668877665544434444555566666554443222 235566666666655554 589888755
No 409
>COG4398 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.54 E-value=1.3e+02 Score=27.50 Aligned_cols=49 Identities=16% Similarity=0.049 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHh----CCCEEEEcceeecCCcCcHHHHHHHHcCCCccccee
Q 025565 96 TVAKILKSLVEVE----KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFAS 144 (251)
Q Consensus 96 a~a~~La~~ik~~----~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~ 144 (251)
+...+++++..+. +.-+||+|+.+--.+...+-|.++++|..|.+-.|.
T Consensus 20 A~~ea~~~a~~~l~g~~~l~~v~l~Sra~~~~aa~vlp~v~e~ls~p~lIGC~ 72 (389)
T COG4398 20 AAVEAAAQARDELAGEAPLLAVLLGSRAHTDRAADVLPAVQEMLSPPALIGCI 72 (389)
T ss_pred HHHHHHHHhhhcccCCCCEEEEEecccchhhhHHHHHHHHHHhcCccceeeec
Confidence 3444444444432 334778888554446677888899999988776664
No 410
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=25.51 E-value=3.1e+02 Score=20.95 Aligned_cols=86 Identities=19% Similarity=0.139 Sum_probs=49.6
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCC----CCEEEEEeeCC--CCCHHHHHHHHHHHHHHhC-CCEEE
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMG----ADRGVHVEAAG--QLYPLTVAKILKSLVEVEK-PGLII 114 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~G----aD~vi~v~~~~--~~d~~a~a~~La~~ik~~~-~dlIl 114 (251)
+.+.-.+|+++ |.++.++|=++.. ..-+.+-.+| .|.++..++-. ..++..+-.++.++ ..+ -++++
T Consensus 82 ~~~~L~~l~~~--~~~~~i~Sn~~~~--~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~--~~~p~~~~~ 155 (176)
T PF13419_consen 82 VRELLERLKAK--GIPLVIVSNGSRE--RIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKL--GIPPEEILF 155 (176)
T ss_dssp HHHHHHHHHHT--TSEEEEEESSEHH--HHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHH--TSSGGGEEE
T ss_pred hhhhhhhcccc--cceeEEeecCCcc--cccccccccccccccccccccchhhhhhhHHHHHHHHHHHc--CCCcceEEE
Confidence 34444556654 6788888888643 2223333345 56666554322 35677776666555 223 46999
Q ss_pred EcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 115 LGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 115 ~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
+|.+.. --.-|..+|++.+
T Consensus 156 vgD~~~-------d~~~A~~~G~~~i 174 (176)
T PF13419_consen 156 VGDSPS-------DVEAAKEAGIKTI 174 (176)
T ss_dssp EESSHH-------HHHHHHHTTSEEE
T ss_pred EeCCHH-------HHHHHHHcCCeEE
Confidence 988653 3455666776543
No 411
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=25.50 E-value=1.2e+02 Score=23.50 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=16.7
Q ss_pred EEEcceeecCCcCcHHHHHHHHcCCCccc
Q 025565 113 IILGKQAIDDDCNQTGQMVAGLLSWPQGT 141 (251)
Q Consensus 113 Il~G~~s~d~~~~~v~~~lA~~Lg~p~vt 141 (251)
|+.|+++ ..++-++|..||+++..
T Consensus 3 I~~g~~~-----~~La~~ia~~L~~~~~~ 26 (116)
T PF13793_consen 3 IFSGSSS-----QDLAERIAEALGIPLGK 26 (116)
T ss_dssp EEESSSG-----HHHHHHHHHHTTS-EE-
T ss_pred EEECCCC-----HHHHHHHHHHhCCceee
Confidence 5555543 56999999999998763
No 412
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=25.31 E-value=4.9e+02 Score=23.20 Aligned_cols=129 Identities=15% Similarity=0.145 Sum_probs=68.6
Q ss_pred EEEEeeccCCCceEEecC--CCeE-EccCCccCCCHHhHHHHHHHHHhhhhCCCceEEEEe--e-----------CCchh
Q 025565 5 VAIKRVVDYAVKIRVKSD--RTGV-ETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVS--M-----------GPAQC 68 (251)
Q Consensus 5 V~~K~Vpd~~~~~~~~~~--~~~~-~~~~~~~~in~~d~~Ale~A~~lae~~~g~~V~al~--~-----------G~~~~ 68 (251)
+.+++-||-+..+++..+ +..+ -.+.. ...|..=.+.|-.+-.+++. .-.+|+++. + |..-.
T Consensus 26 ~~~~~FpdGE~~v~i~~~v~g~~v~i~~~~-~~~~d~l~ell~~~~alr~~-ga~~i~~v~PY~~YaRqDr~~~~ge~is 103 (285)
T PRK00934 26 VETKRFPDGELYVRILGEIDGEDVVIISTT-YPQDENLVELLLLIDALRDE-GAKSITLVIPYLGYARQDKRFKPGEPIS 103 (285)
T ss_pred eEEEECCCCCEEEEECCCcCCCEEEEEeCC-CCCcHHHHHHHHHHHHHHHc-CCCeEEEEecCCcccccccccCCCCCcc
Confidence 457888998766666422 1222 22211 11233112333333344443 233676663 2 22222
Q ss_pred HHHHHH-HHHCCCCEEEEEeeCC----C-C----CHHHHHHHHHHHHHHh-CCCEEEEcceeecCCcCcHHHHHHHHcCC
Q 025565 69 VDTLRT-GLAMGADRGVHVEAAG----Q-L----YPLTVAKILKSLVEVE-KPGLIILGKQAIDDDCNQTGQMVAGLLSW 137 (251)
Q Consensus 69 ~~~l~~-~la~GaD~vi~v~~~~----~-~----d~~a~a~~La~~ik~~-~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~ 137 (251)
...+.+ +-++| |+++.++-.. . + +....++.|++.+++. +..+|+ | .|..+-.++..+|.+||.
T Consensus 104 ak~~a~ll~~~~-d~vitvD~H~~~~~~~f~~~~~~l~a~~~la~~i~~~~~~~vvv-~---pd~Ga~~~a~~lA~~l~~ 178 (285)
T PRK00934 104 ARAIAKIISAYY-DRIITINIHEPSILEFFPIPFINLDAAPLIAEYIGDKLDDPLVL-A---PDKGALELAKEAAEILGC 178 (285)
T ss_pred HHHHHHHHHHhc-CEEEEEcCChHHHcCcCCCcEeEeecHHHHHHHHHhcCCCCEEE-E---eCCchHHHHHHHHHHhCC
Confidence 333444 44567 9999998421 1 1 2334467788887542 223444 3 345667899999999999
Q ss_pred Ccc
Q 025565 138 PQG 140 (251)
Q Consensus 138 p~v 140 (251)
|+.
T Consensus 179 ~~~ 181 (285)
T PRK00934 179 EYD 181 (285)
T ss_pred CEE
Confidence 964
No 413
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=25.28 E-value=2e+02 Score=22.26 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=26.3
Q ss_pred HHHHHHHHHCCCCEEEEEeeCC-CCCHHHHHHHHHHHHHHh-CCCEEEEcce
Q 025565 69 VDTLRTGLAMGADRGVHVEAAG-QLYPLTVAKILKSLVEVE-KPGLIILGKQ 118 (251)
Q Consensus 69 ~~~l~~~la~GaD~vi~v~~~~-~~d~~a~a~~La~~ik~~-~~dlIl~G~~ 118 (251)
..+++.+ ..|...|+++..|- ..++ ..|.++.+.. ..|+||.+..
T Consensus 50 ~~a~~~~-~~g~~~vvliGsD~P~l~~----~~l~~A~~~L~~~d~VlgPa~ 96 (122)
T PF09837_consen 50 ANAFQQA-ARGYEPVVLIGSDCPDLTP----DDLEQAFEALQRHDVVLGPAE 96 (122)
T ss_dssp HHHHHHH-HTT-SEEEEE-SS-TT--H----HHHHHHHHHTTT-SEEEEEBT
T ss_pred HHHHHHH-HcCCCcEEEEcCCCCCCCH----HHHHHHHHHhccCCEEEeecc
Confidence 4456666 77899999998663 3344 4555555554 5799887775
No 414
>PRK15452 putative protease; Provisional
Probab=25.18 E-value=3.6e+02 Score=25.92 Aligned_cols=99 Identities=15% Similarity=0.093 Sum_probs=62.0
Q ss_pred CHHhHHHHHHHHHhhhhCCCceEEEE---eeCCch---hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhC
Q 025565 36 NPFCEIALEEALRIKESGLASEVVAV---SMGPAQ---CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEK 109 (251)
Q Consensus 36 n~~d~~Ale~A~~lae~~~g~~V~al---~~G~~~---~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~ 109 (251)
++++.+-++++++++.. .|.+|.+. .+-... ..+.++.+...|+|.+++ .|. .+...+++..
T Consensus 41 ~~f~~edl~eav~~ah~-~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV-~d~----------G~l~~~ke~~ 108 (443)
T PRK15452 41 NEFNHENLALGINEAHA-LGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIM-SDP----------GLIMMVREHF 108 (443)
T ss_pred cCCCHHHHHHHHHHHHH-cCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEE-cCH----------HHHHHHHHhC
Confidence 56677779999999887 67787654 233322 233467778899997665 321 3345677777
Q ss_pred CCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEE
Q 025565 110 PGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVV 147 (251)
Q Consensus 110 ~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~ 147 (251)
|++-+-+++...-. ...+.+.-..+|+--++-..++.
T Consensus 109 p~l~ih~stqlni~-N~~a~~f~~~lG~~rvvLSrELs 145 (443)
T PRK15452 109 PEMPIHLSVQANAV-NWATVKFWQQMGLTRVILSRELS 145 (443)
T ss_pred CCCeEEEEecccCC-CHHHHHHHHHCCCcEEEECCcCC
Confidence 88877777665543 33455555566765554444443
No 415
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=25.11 E-value=71 Score=26.51 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccc
Q 025565 100 ILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTF 142 (251)
Q Consensus 100 ~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 142 (251)
.+.+++++.+.|.|++|.+.... -......+...+|+|+++.
T Consensus 166 ~~~~l~~~~~~d~iiLgCt~l~~-~~~~~~~l~~~~gipVid~ 207 (216)
T PF01177_consen 166 AARELIKEDGADAIILGCTHLPL-LLGAIEALEEELGIPVIDS 207 (216)
T ss_dssp HHHHHHHCTTSSEEEEESTTGGG-GHHHHHHHHHTCSSEEEEH
T ss_pred HHHHHhccCCCCEEEECCCchHH-HHHHHHhhcccCCCEEEcc
Confidence 33333346799999999876331 0023455566678998754
No 416
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=24.84 E-value=5.1e+02 Score=23.21 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhCCCEEEEcc
Q 025565 95 LTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 95 ~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
..+...+.+.+++.++|+|++.+
T Consensus 146 ~~~e~~~~~~l~~~~~Dlivlag 168 (280)
T TIGR00655 146 VEHEKRQLELLKQYQVDLVVLAK 168 (280)
T ss_pred hhhHHHHHHHHHHhCCCEEEEeC
Confidence 34455666777777788777654
No 417
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=24.77 E-value=4.9e+02 Score=23.06 Aligned_cols=30 Identities=7% Similarity=0.056 Sum_probs=21.7
Q ss_pred HHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 101 LKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 101 La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
++.+++ ..|++++..+ -+..+|..+|.|.+
T Consensus 247 laali~--~a~l~I~nDS--------Gp~HlA~A~g~p~v 276 (322)
T PRK10964 247 VARVLA--GAKAVVSVDT--------GLSHLTAALDRPNI 276 (322)
T ss_pred HHHHHH--hCCEEEecCC--------cHHHHHHHhCCCEE
Confidence 334444 5888886653 47789999999987
No 418
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=24.71 E-value=2.1e+02 Score=24.48 Aligned_cols=40 Identities=15% Similarity=0.041 Sum_probs=22.0
Q ss_pred CCCEEEEEeeCC-CC--CHHHHHHHHHHHHHHhCCCEEEEcce
Q 025565 79 GADRGVHVEAAG-QL--YPLTVAKILKSLVEVEKPGLIILGKQ 118 (251)
Q Consensus 79 GaD~vi~v~~~~-~~--d~~a~a~~La~~ik~~~~dlIl~G~~ 118 (251)
++|-+|++.+-. ++ .+...-..+|+.+-+.+.|+|+.|++
T Consensus 172 ~~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~DvIiG~H~ 214 (239)
T smart00854 172 KADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIGHHP 214 (239)
T ss_pred cCCEEEEEecCccccCCCCCHHHHHHHHHHHHcCCCEEEcCCC
Confidence 577666665422 11 12222344555554457898887774
No 419
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=24.70 E-value=1.8e+02 Score=25.86 Aligned_cols=55 Identities=20% Similarity=0.183 Sum_probs=35.5
Q ss_pred eEEEEeeCCch--hHHHHHHHHHCCCCEEEEEeeC-CCCCHHHHHHHHHHHHHHh-CCCEE
Q 025565 57 EVVAVSMGPAQ--CVDTLRTGLAMGADRGVHVEAA-GQLYPLTVAKILKSLVEVE-KPGLI 113 (251)
Q Consensus 57 ~V~al~~G~~~--~~~~l~~~la~GaD~vi~v~~~-~~~d~~a~a~~La~~ik~~-~~dlI 113 (251)
.|+-...|+-. ++.+| -..+|+|-+|+=+.= ...||...|++|-++...+ +|+++
T Consensus 208 PVvnFAAGGvATPADAAL--MM~LGadGVFVGSGIFKS~~P~~~A~AIV~A~~~yddp~~l 266 (296)
T COG0214 208 PVVNFAAGGVATPADAAL--MMQLGADGVFVGSGIFKSSNPEKRAKAIVEATTHYDDPEVL 266 (296)
T ss_pred CeEeecccCcCChhHHHH--HHHhCCCeEEecccccCCCCHHHHHHHHHHHHHccCCHHHH
Confidence 56666666532 22322 346799998885521 1458999999999998865 45543
No 420
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=24.67 E-value=4e+02 Score=24.81 Aligned_cols=32 Identities=9% Similarity=0.008 Sum_probs=21.1
Q ss_pred HHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 100 ILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 100 ~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
-+.+.+++.+||+++.|... + .--.+.|.|..
T Consensus 336 ~l~~~i~~~~pDlli~~~~~-----a----~pl~r~G~P~~ 367 (396)
T cd01979 336 RQLDRIRELRPDLVVTGLGL-----A----NPLEARGITTK 367 (396)
T ss_pred HHHHHHHhcCCCEEEecccc-----c----CcHHhCCCcce
Confidence 44567788899999987321 1 13567777764
No 421
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=24.67 E-value=3.1e+02 Score=20.65 Aligned_cols=80 Identities=13% Similarity=0.047 Sum_probs=45.1
Q ss_pred HhHHHHHHHHHhhhhCCCceEEEEeeCCchh----------HHHHHHHHHCC--CCEEEEEeeCCCCCHHHHHHHHHHHH
Q 025565 38 FCEIALEEALRIKESGLASEVVAVSMGPAQC----------VDTLRTGLAMG--ADRGVHVEAAGQLYPLTVAKILKSLV 105 (251)
Q Consensus 38 ~d~~Ale~A~~lae~~~g~~V~al~~G~~~~----------~~~l~~~la~G--aD~vi~v~~~~~~d~~a~a~~La~~i 105 (251)
--...++.|++++ +.++..+.+.+... ++-++.+-+.+ .+.++.++.+...... .-..+...+
T Consensus 14 GH~~ll~~a~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~ 88 (143)
T cd02039 14 GHLKLIKEALEEA----LDEVIIIIVSNPPKKKRNKDPFSLHERVEMLKEILKDRLKVVPVDFPEVKILL-AVVFILKIL 88 (143)
T ss_pred HHHHHHHHHHHHc----CCceEEEEcCCChhhcccccCCCHHHHHHHHHHhccCCcEEEEEecChhhccC-HHHHHHHHH
Confidence 3456677777776 12444444433221 23355566667 7888887754321111 112344455
Q ss_pred HHhCCCEEEEcceeecC
Q 025565 106 EVEKPGLIILGKQAIDD 122 (251)
Q Consensus 106 k~~~~dlIl~G~~s~d~ 122 (251)
+..+++.+++|.-...+
T Consensus 89 ~~~~~~~~v~G~d~~~~ 105 (143)
T cd02039 89 LKVGPDKVVVGEDFAFG 105 (143)
T ss_pred HHcCCcEEEECCccccC
Confidence 66789999999976544
No 422
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=24.66 E-value=77 Score=26.35 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=26.8
Q ss_pred HhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 107 VEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 107 ~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
.+.|.++++|.--.|.. .++.+||+.+|++++
T Consensus 5 r~~PNILvtGTPG~GKs--tl~~~lae~~~~~~i 36 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKS--TLAERLAEKTGLEYI 36 (176)
T ss_pred hcCCCEEEeCCCCCCch--hHHHHHHHHhCCceE
Confidence 45899999998766653 699999999999977
No 423
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=24.63 E-value=2.7e+02 Score=25.86 Aligned_cols=85 Identities=9% Similarity=-0.086 Sum_probs=51.2
Q ss_pred CceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCC----C------CCH----HHHHHHHHHHHHHh------------
Q 025565 55 ASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG----Q------LYP----LTVAKILKSLVEVE------------ 108 (251)
Q Consensus 55 g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~----~------~d~----~a~a~~La~~ik~~------------ 108 (251)
+.+|..+-.|+- ....++.+...|+-++.++++|. + ++. ..-+.++++.+++.
T Consensus 135 ~~~VlvvG~GG~-Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~ 213 (376)
T PRK08762 135 EARVLLIGAGGL-GSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQER 213 (376)
T ss_pred cCcEEEECCCHH-HHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 446777766653 35677888899999999998762 0 110 12234444444332
Q ss_pred -----------CCCEEEEcceeecCCcCcHHHHHHHHcCCCcccc
Q 025565 109 -----------KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTF 142 (251)
Q Consensus 109 -----------~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 142 (251)
++|+|+...-+. .++..--..+..+++|++..
T Consensus 214 ~~~~~~~~~~~~~D~Vv~~~d~~--~~r~~ln~~~~~~~ip~i~~ 256 (376)
T PRK08762 214 VTSDNVEALLQDVDVVVDGADNF--PTRYLLNDACVKLGKPLVYG 256 (376)
T ss_pred CChHHHHHHHhCCCEEEECCCCH--HHHHHHHHHHHHcCCCEEEE
Confidence 467777554321 23445666788999998754
No 424
>PRK07742 phosphate butyryltransferase; Validated
Probab=24.54 E-value=5.1e+02 Score=23.27 Aligned_cols=75 Identities=12% Similarity=0.056 Sum_probs=45.5
Q ss_pred HHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHH-HHHCCC--CEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEE
Q 025565 37 PFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRT-GLAMGA--DRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLI 113 (251)
Q Consensus 37 ~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~-~la~Ga--D~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlI 113 (251)
..|...|+.|.+..++ + -+..+.+|+++ .+++ +-.+|. ..-+.+-+.. +....+..-..++++.+.|.+
T Consensus 23 ~~d~~vl~Aa~~a~~e--~-~~~~iLvG~~~---~I~~~~~~~~l~~~~~~~Ii~~~--~~~~s~~~a~~lV~~G~aD~l 94 (299)
T PRK07742 23 AEDEEVIEAVAKAIEL--Q-LARFRLYGNQE---KIMGMLQEHGLQTSEHIEIIHAQ--SSAEAAELAVKAVRNGEADVL 94 (299)
T ss_pred CCCHHHHHHHHHHHHc--C-CceEEEECCHH---HHHHHHHHCCCCCCCCcEEECCC--CHHHHHHHHHHHHHCCCCCEE
Confidence 4588899999888776 3 26778899863 3444 444554 1112222221 223323444567888899999
Q ss_pred EEccee
Q 025565 114 ILGKQA 119 (251)
Q Consensus 114 l~G~~s 119 (251)
+.|..+
T Consensus 95 vsG~~t 100 (299)
T PRK07742 95 MKGNVP 100 (299)
T ss_pred EECCcC
Confidence 998864
No 425
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=24.54 E-value=6e+02 Score=23.92 Aligned_cols=134 Identities=19% Similarity=0.191 Sum_probs=81.2
Q ss_pred CccCCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCch----hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHH
Q 025565 31 VKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQ----CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVE 106 (251)
Q Consensus 31 ~~~~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~----~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik 106 (251)
++.+-+|.| |++||+++++-+|+=+.+|=+. ....+.+|.+.|.+...++... ...+. ++..+++
T Consensus 112 VriVYSpld------Al~iA~~nP~k~vVF~avGFETTaP~~A~~i~~A~~~~~~Nfsvl~~h-kl~PP----a~~~ll~ 180 (364)
T PRK15062 112 VRIVYSPLD------ALKIARENPDKEVVFFAIGFETTAPATAATLLQAKAEGLKNFSVLSSH-KLVPP----AMRALLE 180 (364)
T ss_pred EEEEeCHHH------HHHHHHHCCCCeEEEEecCchhccHHHHHHHHHHHHcCCCCEEEEEec-cccHH----HHHHHHc
Confidence 344556655 4555666578899989999764 2335677788899999888743 23333 5555555
Q ss_pred Hh--CCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEEEecC-CCeEEEEEEeCCeEEEEEECCCEEEE
Q 025565 107 VE--KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKE-KQLAMVEREVDGGLETLELDLPAVIT 177 (251)
Q Consensus 107 ~~--~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~-~~~l~~~R~~~gG~~~~~~~~P~vvt 177 (251)
.. +.|-+|++..-+---|..-=--+++..+.|++ |..++..+= .+-+...|+...|...++-..+-+|+
T Consensus 181 ~~~~~idgfi~PGHVstI~G~~~y~~l~~~y~~P~V--VaGFEp~DiL~ai~~lv~q~~~g~~~v~N~Y~r~V~ 252 (364)
T PRK15062 181 DPELRIDGFIAPGHVSTIIGTEPYEFLAEEYGIPVV--VAGFEPLDILQSILMLVRQLEEGRAEVENQYTRVVK 252 (364)
T ss_pred CCCCCccEEEecCEeEEEeccchhHHHHHHcCCCeE--EeccCHHHHHHHHHHHHHHHHCCCceEEEccceeeC
Confidence 43 58888887766554445556679999999976 444543200 12233445555555555544444443
No 426
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=24.54 E-value=4.3e+02 Score=23.46 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=11.0
Q ss_pred HHHHHHHHCCCCEEEE
Q 025565 70 DTLRTGLAMGADRGVH 85 (251)
Q Consensus 70 ~~l~~~la~GaD~vi~ 85 (251)
+.+++++..|||++++
T Consensus 88 e~v~~~l~aGa~rVvI 103 (253)
T TIGR02129 88 TNAQEWLDEGASHVIV 103 (253)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 5666677777777766
No 427
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.50 E-value=1.9e+02 Score=25.95 Aligned_cols=52 Identities=15% Similarity=-0.023 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCccccee
Q 025565 89 AGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFAS 144 (251)
Q Consensus 89 ~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~ 144 (251)
|...++....+...+++.+.+.++|+.+.++. .... ..+++..++|+++...
T Consensus 51 D~~~~p~~a~~~~~~li~~~~v~~iiG~~~s~---~~~~-~~~~~~~~ip~i~~~~ 102 (347)
T cd06336 51 DDKYDPAEAAANARRLVQQDGVKFILGPIGGG---ITAA-QQITERNKVLLLTAYS 102 (347)
T ss_pred cCCCCHHHHHHHHHHHHhhcCceEEEeCCCCc---hhhh-hhhhhhcCceEEeccC
Confidence 33578888888888888877898888665442 2233 6678888999987664
No 428
>PRK03482 phosphoglycerate mutase; Provisional
Probab=24.48 E-value=75 Score=26.70 Aligned_cols=41 Identities=12% Similarity=-0.002 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCc
Q 025565 96 TVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQ 139 (251)
Q Consensus 96 a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~ 139 (251)
.-|..+++.++..++|.|+++... .+.|++-.++..++.|+
T Consensus 34 ~qA~~~~~~l~~~~~~~I~sSpl~---Ra~qTA~~i~~~~~~~~ 74 (215)
T PRK03482 34 QQAMQVAERAKELGITHIISSDLG---RTRRTAEIIAQACGCDI 74 (215)
T ss_pred HHHHHHHHHHhcCCCCEEEECCcH---HHHHHHHHHHHhcCCCe
Confidence 445666666666677888876655 44567777777777664
No 429
>PRK08339 short chain dehydrogenase; Provisional
Probab=24.36 E-value=4.5e+02 Score=22.45 Aligned_cols=71 Identities=10% Similarity=0.082 Sum_probs=38.2
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHC-CCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAM-GADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~-GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
..+.|.+|++. |.+|+.+.-..+..++...+.... |. ++..+..| ..|.......+.++ ++. ++|+++...
T Consensus 21 G~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D-v~~~~~i~~~~~~~-~~~g~iD~lv~na 93 (263)
T PRK08339 21 GFGVARVLARA--GADVILLSRNEENLKKAREKIKSESNV-DVSYIVAD-LTKREDLERTVKEL-KNIGEPDIFFFST 93 (263)
T ss_pred HHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhhcCC-ceEEEEec-CCCHHHHHHHHHHH-HhhCCCcEEEECC
Confidence 45677888875 678776655544333333333222 43 34444433 34566666666655 333 588877543
No 430
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.35 E-value=1.5e+02 Score=25.92 Aligned_cols=53 Identities=15% Similarity=0.008 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCccccee
Q 025565 89 AGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFAS 144 (251)
Q Consensus 89 ~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~ 144 (251)
|...++........+++.+.+.++|+-+.++ + .......++...++|+++...
T Consensus 47 D~~~~~~~~~~~~~~li~~~~v~aiiG~~~s-~--~~~~v~~~~~~~~ip~i~~~~ 99 (334)
T cd06347 47 DNKSDKEEAANAATRLIDQDKVVAIIGPVTS-G--ATLAAGPIAEDAKVPMITPSA 99 (334)
T ss_pred cCCCChHHHHHHHHHHhcccCeEEEEcCCcc-H--hHHHhHHHHHHCCCeEEcCCC
Confidence 3366788777888888876688888544333 2 122334678889999998643
No 431
>PF13941 MutL: MutL protein
Probab=24.33 E-value=6.6e+02 Score=24.36 Aligned_cols=86 Identities=15% Similarity=0.053 Sum_probs=56.6
Q ss_pred HHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh--CCCEEEEcce
Q 025565 41 IALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE--KPGLIILGKQ 118 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~--~~dlIl~G~~ 118 (251)
-..++|++.+-. .|.+|.-++.|.-. +..+++....-.|=+++.-. -..-...+.-..|+.+.+. +.-+|++|++
T Consensus 88 ~Ta~AAk~AAlg-AGA~V~~v~s~~l~-~~~l~~i~~~~PDiILLaGG-tDgG~~~~il~nA~~La~~~~~~pVIyAGN~ 164 (457)
T PF13941_consen 88 LTAEAAKRAALG-AGARVLQVYSYELT-EEDLEEIREIRPDIILLAGG-TDGGNKEVILHNAEMLAEANLRIPVIYAGNK 164 (457)
T ss_pred HHHHHHHHHHhc-CCcEEEEEeccCCC-HHHHHHHhccCCCEEEEeCC-ccCCchHHHHHHHHHHHhCCCCCcEEEECCH
Confidence 346777777765 78899999988754 77788888888886666542 1111222233334444433 4558999996
Q ss_pred eecCCcCcHHHHHHHHcC
Q 025565 119 AIDDDCNQTGQMVAGLLS 136 (251)
Q Consensus 119 s~d~~~~~v~~~lA~~Lg 136 (251)
. ....+.+.|+
T Consensus 165 ~-------a~~~v~~il~ 175 (457)
T PF13941_consen 165 A-------AQDEVEEILE 175 (457)
T ss_pred H-------HHHHHHHHHH
Confidence 5 7788888877
No 432
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=24.28 E-value=2e+02 Score=25.81 Aligned_cols=76 Identities=21% Similarity=0.144 Sum_probs=43.0
Q ss_pred HHHHhhhhCCCceEEEEeeCCchhHHHHHHHHH-CCCCEEEEEeeCCCCCHHHHHHHHHHHHH---HhCCCEEEEcceee
Q 025565 45 EALRIKESGLASEVVAVSMGPAQCVDTLRTGLA-MGADRGVHVEAAGQLYPLTVAKILKSLVE---VEKPGLIILGKQAI 120 (251)
Q Consensus 45 ~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la-~GaD~vi~v~~~~~~d~~a~a~~La~~ik---~~~~dlIl~G~~s~ 120 (251)
.+.-|++ .|.+|..-+-.|-+.++-...+++ .|+ .||-- .+.+.+.|-.-|.+++. ..+|++|+
T Consensus 59 L~~tL~a--~GAeV~~~~sNplSTQDdvaAAL~~~Gi-~V~A~---~get~eey~~~i~~~L~~~~~~~P~~ii------ 126 (268)
T PF05221_consen 59 LAETLKA--LGAEVRWTGSNPLSTQDDVAAALAEEGI-PVFAW---KGETDEEYWWCIEKALSWEDDHGPNLII------ 126 (268)
T ss_dssp HHHHHHH--TTEEEEEEESSTTT--HHHHHHHHHTTE-EEEE----TT--HHHHHHHHHHCHSESTTCE-SEEE------
T ss_pred HHHHHHH--cCCeEEEecCCCcccchHHHHHhccCCc-eEEEe---CCCCHHHHHHHHHHHhcCCCCCCcceee------
Confidence 3444555 467777766666555555444444 343 33332 24577888888888774 34799998
Q ss_pred cCCcCcHHHHHHH
Q 025565 121 DDDCNQTGQMVAG 133 (251)
Q Consensus 121 d~~~~~v~~~lA~ 133 (251)
| ||+++-.++-.
T Consensus 127 D-DG~Dl~~~lh~ 138 (268)
T PF05221_consen 127 D-DGGDLVNLLHT 138 (268)
T ss_dssp E-SSSHHHHHHHH
T ss_pred c-chHHHHHHHHH
Confidence 4 66777666654
No 433
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=24.23 E-value=3e+02 Score=20.43 Aligned_cols=49 Identities=18% Similarity=0.032 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhhhhCCCceEEEEe--eCCchhHHHHHHHHHCCCCEEEEEe
Q 025565 39 CEIALEEALRIKESGLASEVVAVS--MGPAQCVDTLRTGLAMGADRGVHVE 87 (251)
Q Consensus 39 d~~Ale~A~~lae~~~g~~V~al~--~G~~~~~~~l~~~la~GaD~vi~v~ 87 (251)
....-+.+.+++++..+..|..-. .+.++..+.++++.+.|+++++++.
T Consensus 16 ~~~~~~l~~~l~~~~~~~~v~~afle~~~P~~~~~l~~l~~~g~~~i~vvP 66 (117)
T cd03414 16 NADVAKIARLLEEGTGFARVETAFAAATRPSLPEALERLRALGARRVVVLP 66 (117)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEecCCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 334445666666652224554433 3456778899999999999999986
No 434
>PRK04182 cytidylate kinase; Provisional
Probab=24.20 E-value=49 Score=26.41 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=17.1
Q ss_pred EEEEcceeecCCcCcHHHHHHHHcCCCccc
Q 025565 112 LIILGKQAIDDDCNQTGQMVAGLLSWPQGT 141 (251)
Q Consensus 112 lIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 141 (251)
++++|...+|+ ..++-.||..||++++.
T Consensus 3 I~i~G~~GsGK--stia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGK--TTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCH--HHHHHHHHHHcCCcEec
Confidence 45555554444 35777777777777664
No 435
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=24.15 E-value=4.5e+02 Score=22.34 Aligned_cols=97 Identities=10% Similarity=-0.115 Sum_probs=55.7
Q ss_pred CHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 025565 36 NPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIIL 115 (251)
Q Consensus 36 n~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~ 115 (251)
+-....++..+..|.+. |.++..+++.... .........|.+ ++.+..+...........+...+++.+||+|.+
T Consensus 12 gG~~~~~~~l~~~l~~~--~~~v~~~~~~~~~--~~~~~~~~~~i~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~div~~ 86 (365)
T cd03807 12 GGAERMLVRLLKGLDRD--RFEHVVISLTDRG--ELGEELEEAGVP-VYCLGKRPGRPDPGALLRLYKLIRRLRPDVVHT 86 (365)
T ss_pred ccHHHHHHHHHHHhhhc--cceEEEEecCcch--hhhHHHHhcCCe-EEEEecccccccHHHHHHHHHHHHhhCCCEEEe
Confidence 33455667788888764 5677777776532 233333345765 455543323233445566778888889999998
Q ss_pred cceeecCCcCcHHHHHHHHc--CCCcccc
Q 025565 116 GKQAIDDDCNQTGQMVAGLL--SWPQGTF 142 (251)
Q Consensus 116 G~~s~d~~~~~v~~~lA~~L--g~p~vt~ 142 (251)
.... ......++.++ +.+.+..
T Consensus 87 ~~~~-----~~~~~~~~~~~~~~~~~i~~ 110 (365)
T cd03807 87 WMYH-----ADLYGGLAARLAGVPPVIWG 110 (365)
T ss_pred cccc-----ccHHHHHHHHhcCCCcEEEE
Confidence 6532 12444444443 5555433
No 436
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=24.10 E-value=3e+02 Score=28.90 Aligned_cols=66 Identities=18% Similarity=0.130 Sum_probs=45.0
Q ss_pred hHHHHHHHHHCCCCEEEEEee-CC-----------CCCHHHHHHHHHHHHHHh--CC-CEEEEcceeecCCcCcHHHHHH
Q 025565 68 CVDTLRTGLAMGADRGVHVEA-AG-----------QLYPLTVAKILKSLVEVE--KP-GLIILGKQAIDDDCNQTGQMVA 132 (251)
Q Consensus 68 ~~~~l~~~la~GaD~vi~v~~-~~-----------~~d~~a~a~~La~~ik~~--~~-dlIl~G~~s~d~~~~~v~~~lA 132 (251)
|..++.-|+.+|=|.+++=+. +. .-.+..-|+++++.+.+. +. .++++|+...|+| .+|+.+|
T Consensus 311 A~~aldlAlgRGGDQvvvk~~~~~~~fyGGks~~~eKrtrVraRvia~~L~elI~~~d~ViI~gH~nPD~D--AlGSala 388 (838)
T PRK14538 311 SQNAIELAQKRGGDQAVVNIENEKIKYFGAKIASLSKQSKVNARVNAQNLVDILKKNPHCFIMGHNHTDLD--SLGSMIA 388 (838)
T ss_pred HHHHHHHHhccCCCEEEEEcCCCCceEeCCCCCcccchhhHHHHHHHHHHHHHHhcCCeEEEEecCCCCch--HHHHHHH
Confidence 556678889999999966542 21 114556667777666553 34 5999999999987 6777776
Q ss_pred HHc
Q 025565 133 GLL 135 (251)
Q Consensus 133 ~~L 135 (251)
-..
T Consensus 389 L~~ 391 (838)
T PRK14538 389 FYK 391 (838)
T ss_pred HHH
Confidence 443
No 437
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=23.98 E-value=4.5e+02 Score=25.56 Aligned_cols=86 Identities=9% Similarity=0.014 Sum_probs=56.4
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh--CCCEEEEccee
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE--KPGLIILGKQA 119 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~--~~dlIl~G~~s 119 (251)
-.++|++.+-. .|.+|.-+..+... ...+++....-.|=+++.-. -..-...+.--.|+.+.+. +.-+|++|+++
T Consensus 85 TaeAAk~AAlg-AGA~V~~~~a~~l~-~~~l~~I~~~~PDIILLaGG-tDGG~~e~~l~NA~~La~~~~~~pIIyAGN~~ 161 (463)
T TIGR01319 85 TAEAAKRAAHG-AGAKIANVYAYDLN-NKDIEAIEESNLDIILFAGG-TDGGEEECGIHNAKMLAEHGLDCAIIVAGNKD 161 (463)
T ss_pred hHHHHHHHHhc-CCcEEEEEEeecCC-HHHHHHHhhcCCCEEEEeCC-cCCCchHHHHHHHHHHHhcCCCCcEEEeCCHH
Confidence 46777777765 68899988888764 66788888887885555532 1222233344455555554 44589999975
Q ss_pred ecCCcCcHHHHHHHHcCC
Q 025565 120 IDDDCNQTGQMVAGLLSW 137 (251)
Q Consensus 120 ~d~~~~~v~~~lA~~Lg~ 137 (251)
....+++.|+-
T Consensus 162 -------a~~~V~~il~~ 172 (463)
T TIGR01319 162 -------IQDEVQEIFDH 172 (463)
T ss_pred -------HHHHHHHHHhc
Confidence 67777777763
No 438
>PRK00536 speE spermidine synthase; Provisional
Probab=23.95 E-value=2.6e+02 Score=24.89 Aligned_cols=30 Identities=7% Similarity=-0.027 Sum_probs=23.5
Q ss_pred EEEeeCCchhHHHHHHHHHCCCCEEEEEeeCC
Q 025565 59 VAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG 90 (251)
Q Consensus 59 ~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~ 90 (251)
-++.+|+.+ ..++|+.+.+- +++..|+-|+
T Consensus 75 ~VLIiGGGD-Gg~~REvLkh~-~~v~mVeID~ 104 (262)
T PRK00536 75 EVLIVDGFD-LELAHQLFKYD-THVDFVQADE 104 (262)
T ss_pred eEEEEcCCc-hHHHHHHHCcC-CeeEEEECCH
Confidence 567777765 67899999996 5999998654
No 439
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=23.95 E-value=2.1e+02 Score=25.81 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=37.8
Q ss_pred HHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCC------CCHHHHHHHHHHHHHH
Q 025565 41 IALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQ------LYPLTVAKILKSLVEV 107 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~------~d~~a~a~~La~~ik~ 107 (251)
..++.+..|++. ...+|.+++.=+-...+.+....+.|+|+++..+.-.. ......+..||++++.
T Consensus 225 Tl~~a~~~l~~~-ga~~v~~~~th~v~~~~a~~~l~~~~~~~iv~tdt~~~~~~~~~~~~v~va~~la~~i~~ 296 (308)
T TIGR01251 225 TIAKAAEILKSA-GAKRVIAAATHGVFSGPAIERIANAGVEEVIVTNTIPHEKHKPKVSVISVAPLIAEAIRR 296 (308)
T ss_pred HHHHHHHHHHhc-CCCEEEEEEEeeecCcHHHHHHHhCCCCEEEEeCCCCccccCCCcEEEEhHHHHHHHHHH
Confidence 556666667665 33466555422111234667777889999998874211 2233455666666655
No 440
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=23.88 E-value=4.4e+02 Score=22.20 Aligned_cols=62 Identities=6% Similarity=-0.127 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHH
Q 025565 40 EIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVE 106 (251)
Q Consensus 40 ~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik 106 (251)
...++...+|++.+++.+|++++.-... ....+.+...||+- |+.. ..++.....+|..+..
T Consensus 53 ~~Gl~~~~~l~~~~p~~~iIvlt~~~~~-~~~~~~~~~~Ga~g-yl~K---~~~~~eL~~aI~~v~~ 114 (207)
T PRK11475 53 REGLSCLTELAIKFPRMRRLVIADDDIE-ARLIGSLSPSPLDG-VLSK---ASTLEILQQELFLSLN 114 (207)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEeCCCCH-HHHHHHHHHcCCeE-EEec---CCCHHHHHHHHHHHHC
Confidence 3467778888877677888888865432 33445555789875 5443 3466667777766654
No 441
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=23.85 E-value=1.2e+02 Score=29.92 Aligned_cols=46 Identities=11% Similarity=0.076 Sum_probs=29.3
Q ss_pred HHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceee
Q 025565 69 VDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAI 120 (251)
Q Consensus 69 ~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~ 120 (251)
.+.++++-+.|+|-+|++.+-. ++.. ..||+.+. +.|+||.|++-.
T Consensus 172 ~~~v~~Lk~~g~D~II~lsH~g-~~~d---~~la~~~~--~iD~IigGHsH~ 217 (550)
T TIGR01530 172 QIAANALKQQGINKIILLSHAG-FEKN---CEIAQKIN--DIDVIVSGDSHY 217 (550)
T ss_pred HHHHHHHHhCCCCEEEEEecCC-cHHH---HHHHhcCC--CCCEEEeCCCCc
Confidence 3455666678999999998642 2211 23333322 799999998654
No 442
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=23.82 E-value=1.8e+02 Score=25.20 Aligned_cols=97 Identities=8% Similarity=0.019 Sum_probs=53.1
Q ss_pred CHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEe-eCCCCCHHHHHHHHHHHHHHhCCCEEE
Q 025565 36 NPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVE-AAGQLYPLTVAKILKSLVEVEKPGLII 114 (251)
Q Consensus 36 n~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~-~~~~~d~~a~a~~La~~ik~~~~dlIl 114 (251)
+-......+.+..|.++ |.+|+.++.+.......... .+.. .+... .............+.+.+++.+||+|.
T Consensus 19 GG~~~~~~~l~~~L~~~--g~~V~v~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh 92 (335)
T cd03802 19 GGTERVVAALTEGLVAR--GHEVTLFASGDSKTAAPLVP---VVPE-PLRLDAPGRDRAEAEALALAERALAAGDFDIVH 92 (335)
T ss_pred CcHHHHHHHHHHHHHhc--CceEEEEecCCCCcccceee---ccCC-CcccccchhhHhhHHHHHHHHHHHhcCCCCEEE
Confidence 33455667778888775 67899888776531111100 0000 00000 000123455667778888888999998
Q ss_pred EcceeecCCcCcHHHHHHHHcCCCcccceee
Q 025565 115 LGKQAIDDDCNQTGQMVAGLLSWPQGTFASK 145 (251)
Q Consensus 115 ~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~ 145 (251)
+-..... .. ++..++.|++...-+
T Consensus 93 ~~~~~~~----~~---~~~~~~~~~v~~~h~ 116 (335)
T cd03802 93 NHSLHLP----LP---FARPLPVPVVTTLHG 116 (335)
T ss_pred ecCcccc----hh---hhcccCCCEEEEecC
Confidence 7543211 11 677788887654433
No 443
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=23.80 E-value=6.6e+02 Score=24.15 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=47.0
Q ss_pred cCCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHH-HHHCCCCE-EEEEeeCCCCCHHHHHHHHHHHHHHhCC
Q 025565 33 MSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRT-GLAMGADR-GVHVEAAGQLYPLTVAKILKSLVEVEKP 110 (251)
Q Consensus 33 ~~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~-~la~GaD~-vi~v~~~~~~d~~a~a~~La~~ik~~~~ 110 (251)
.+..|.|...|+.|.+..++ | -+..+.+|++. .+++ +-..|.+. -+.+-+... +...+..-..++++.+.
T Consensus 180 ~v~~~ed~~vl~Aa~~a~~~--~-~~~~iLvG~~~---~I~~~~~~~g~~~~~~eIi~~~~--~~~s~~~a~~lv~~G~a 251 (466)
T PRK08190 180 AVVHPCDAESLRGALEAAEA--G-LIEPVLVGPEA---KIRAAAEEAGLDLSGVRIVDVPH--SHAAAARAVALARAGEV 251 (466)
T ss_pred EEEcCCCHHHHHHHHHHHHc--C-CeeEEEECCHH---HHHHHHHHcCCCcCCCEEECCCC--CHHHHHHHHHHHHCCCC
Confidence 34566688888888887775 3 36678889853 3333 44456431 112221111 22334445577888899
Q ss_pred CEEEEccee
Q 025565 111 GLIILGKQA 119 (251)
Q Consensus 111 dlIl~G~~s 119 (251)
|.++.|..+
T Consensus 252 D~~v~G~~~ 260 (466)
T PRK08190 252 EALMKGSLH 260 (466)
T ss_pred CEEEeCCCC
Confidence 999998543
No 444
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=23.78 E-value=1.8e+02 Score=25.88 Aligned_cols=51 Identities=10% Similarity=-0.025 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccc
Q 025565 89 AGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTF 142 (251)
Q Consensus 89 ~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 142 (251)
|...++.....+..+++.+.+.+.|+-+..| . . .....-++...++|+++.
T Consensus 47 D~~~~p~~a~~~~~~li~~~~v~~iiG~~~s-~-~-~~a~~~~~~~~~ip~i~~ 97 (344)
T cd06348 47 DSGGDEAEAINAFQTLINKDRVLAIIGPTLS-Q-Q-AFAADPIAERAGVPVVGP 97 (344)
T ss_pred cCCCChHHHHHHHHHHhhhcCceEEECCCCc-H-H-HHhhhHHHHhCCCCEEec
Confidence 3456888878888888877678777754433 1 1 112234677889998864
No 445
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.72 E-value=5.1e+02 Score=23.37 Aligned_cols=70 Identities=9% Similarity=0.083 Sum_probs=46.7
Q ss_pred HHHHHhhhhCCCceEEEEeeCCchhHHHH-HHHHHCCCCE-EEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 44 EEALRIKESGLASEVVAVSMGPAQCVDTL-RTGLAMGADR-GVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 44 e~A~~lae~~~g~~V~al~~G~~~~~~~l-~~~la~GaD~-vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
+.|.+++.. |.+++ ++.+-..-.+.+ +++.+.|..+ ++.+..| -.|.+...+.+.++.++. +.|+++.-.
T Consensus 27 ~lA~~la~~--G~~l~-lvar~~rrl~~v~~~l~~~~~~~~v~~~~~D-vs~~~~~~~~~~~~~~~fg~vDvLVNNA 99 (282)
T KOG1205|consen 27 ALAYELAKR--GAKLV-LVARRARRLERVAEELRKLGSLEKVLVLQLD-VSDEESVKKFVEWAIRHFGRVDVLVNNA 99 (282)
T ss_pred HHHHHHHhC--CCceE-EeehhhhhHHHHHHHHHHhCCcCccEEEeCc-cCCHHHHHHHHHHHHHhcCCCCEEEecC
Confidence 567777775 54433 344443333344 8888888777 8877754 557788888888888876 689888644
No 446
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=23.65 E-value=3.3e+02 Score=25.56 Aligned_cols=67 Identities=15% Similarity=0.072 Sum_probs=34.9
Q ss_pred HHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCC---CCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 41 IALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMG---ADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~G---aD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
.++..+...++ .|.+++++..-+.. .+.+ +|+.+.+..+...+.+.-...|.+++++.++|+|+.|.
T Consensus 13 ~~~~~~~~a~~--lG~~~v~~~~~~~~--------~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~~~~~~id~I~p~~ 82 (450)
T PRK06111 13 IAVRIIRTCQK--LGIRTVAIYSEADR--------DALHVKMADEAYLIGGPRVQESYLNLEKIIEIAKKTGAEAIHPGY 82 (450)
T ss_pred HHHHHHHHHHH--cCCeEEEEechhhc--------cCcchhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCCEEEeCC
Confidence 34555555555 46677766532210 1111 67877763211101111124567788888999999874
No 447
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=23.63 E-value=4.4e+02 Score=23.65 Aligned_cols=65 Identities=15% Similarity=0.084 Sum_probs=40.6
Q ss_pred CCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeC-CCCCHHHHHHHHHHHHHH
Q 025565 34 SMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAA-GQLYPLTVAKILKSLVEV 107 (251)
Q Consensus 34 ~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~-~~~d~~a~a~~La~~ik~ 107 (251)
..||+....+ .+. .. |-+++-++-..-+....++.+|+|-+.+-+.= ...||...|++++.+++.
T Consensus 175 l~n~~~l~~i------~e~-~~--vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~A 240 (267)
T CHL00162 175 LQNLLNLQII------IEN-AK--IPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQA 240 (267)
T ss_pred CCCHHHHHHH------HHc-CC--CcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHH
Confidence 4577766555 443 33 33333333233456788999999987775521 245888888888888753
No 448
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=23.61 E-value=72 Score=26.67 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=25.4
Q ss_pred CCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 110 PGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 110 ~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
..+||+|-...|+. .+|-+||..|+.+++
T Consensus 3 ~~IvLiG~mGaGKS--TIGr~LAk~L~~~F~ 31 (172)
T COG0703 3 MNIVLIGFMGAGKS--TIGRALAKALNLPFI 31 (172)
T ss_pred ccEEEEcCCCCCHh--HHHHHHHHHcCCCcc
Confidence 56899999887775 699999999999987
No 449
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=23.51 E-value=5.8e+02 Score=23.40 Aligned_cols=74 Identities=12% Similarity=0.025 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhhhhCCCceEEEEee-CCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 39 CEIALEEALRIKESGLASEVVAVSM-GPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 39 d~~Ale~A~~lae~~~g~~V~al~~-G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
|.+.++.+++.. .+.++.+++. |... .+.++.+.+.|+|.+-+..... +. ..+....+.+|+.++++.++..
T Consensus 63 ~~e~i~~~~~~~---~~~~~~~ll~pg~~~-~~dl~~a~~~gvd~iri~~~~~--e~-d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 63 DLEYIEAAADVV---KRAKVAVLLLPGIGT-VHDLKAAYDAGARTVRVATHCT--EA-DVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred hHHHHHHHHHhC---CCCEEEEEeccCccC-HHHHHHHHHCCCCEEEEEeccc--hH-HHHHHHHHHHHHcCCeEEEEEE
Confidence 445565554433 3467776664 3322 4568999999999765544221 22 2345666777888888877666
Q ss_pred ee
Q 025565 118 QA 119 (251)
Q Consensus 118 ~s 119 (251)
.+
T Consensus 136 ~s 137 (333)
T TIGR03217 136 MS 137 (333)
T ss_pred cc
Confidence 55
No 450
>PRK05854 short chain dehydrogenase; Provisional
Probab=23.47 E-value=5.2e+02 Score=22.87 Aligned_cols=74 Identities=15% Similarity=0.015 Sum_probs=42.6
Q ss_pred HHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHC-CCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 41 IALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAM-GADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~-GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
-..+.|.+|+++ |.+|+.+.-..+..++.+.++.+. +-.++..+..| -.|...+.....++.++. ..|+++.-.
T Consensus 26 IG~~~a~~La~~--G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~D-l~d~~sv~~~~~~~~~~~~~iD~li~nA 101 (313)
T PRK05854 26 LGLGLARRLAAA--GAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALD-LSSLASVAALGEQLRAEGRPIHLLINNA 101 (313)
T ss_pred HHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEec-CCCHHHHHHHHHHHHHhCCCccEEEECC
Confidence 346778888875 667776655444444455554443 22345555543 446666666665555554 478877543
No 451
>PLN02199 shikimate kinase
Probab=23.47 E-value=87 Score=28.64 Aligned_cols=108 Identities=11% Similarity=0.116 Sum_probs=56.8
Q ss_pred eEEccCCccCCCHHhHHHHHHHHHhhhhCCCceEEEEee-CCchhHHHHHHHHHCCCC---E--EEEEeeCC--CCCHHH
Q 025565 25 GVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSM-GPAQCVDTLRTGLAMGAD---R--GVHVEAAG--QLYPLT 96 (251)
Q Consensus 25 ~~~~~~~~~~in~~d~~Ale~A~~lae~~~g~~V~al~~-G~~~~~~~l~~~la~GaD---~--vi~v~~~~--~~d~~a 96 (251)
+++.++....-...+ |....+.++. ..-.|.+.+. -|.. .+.-+...+.++. . .-.++... .+|..
T Consensus 14 ~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~de~- 87 (303)
T PLN02199 14 WVDCRKVECKPQRGS---LRYSQQVKVD-RRFRGLSLARLQPER-RNDQRRAVSPAVSCSDNNSSALLETGSVYPFDED- 87 (303)
T ss_pred eecHhhhcCCCCCcc---eehhhccccc-cceeEEEeccccccc-cchhhhccccccccCCCCchhhcccCCCCCCCHH-
Confidence 455554544443333 5567788876 4556666552 2222 1222222222211 0 00111100 23443
Q ss_pred HHHHHHHHHHHh--CCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 97 VAKILKSLVEVE--KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 97 ~a~~La~~ik~~--~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
.-+..|+.++.. +..++|+|...+|+. .++-.||..||++++
T Consensus 88 ~Lk~~a~~i~~~l~~~~I~LIG~~GSGKS--TVgr~LA~~Lg~~fI 131 (303)
T PLN02199 88 ILKRKAEEVKPYLNGRSMYLVGMMGSGKT--TVGKLMSKVLGYTFF 131 (303)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCHH--HHHHHHHHHhCCCEE
Confidence 244444445443 567999999876663 699999999999987
No 452
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=23.47 E-value=3.4e+02 Score=23.92 Aligned_cols=36 Identities=14% Similarity=0.030 Sum_probs=26.7
Q ss_pred CCCEEEEcc--eeecCCcCcHHHHHHHHcCCCccccee
Q 025565 109 KPGLIILGK--QAIDDDCNQTGQMVAGLLSWPQGTFAS 144 (251)
Q Consensus 109 ~~dlIl~G~--~s~d~~~~~v~~~lA~~Lg~p~vt~v~ 144 (251)
+-.+++||. ....-.|-.+++..|+.+++-.+-.++
T Consensus 124 ~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~at 161 (238)
T COG0528 124 KGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKAT 161 (238)
T ss_pred cCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEec
Confidence 357888888 545556667999999999987765554
No 453
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=23.14 E-value=4.7e+02 Score=22.27 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=44.0
Q ss_pred HHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 41 IALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
-..+.+.+|++. |.+|+.+.-.++..++...+....|. ++..+..| ..+...+...+.++.++. ++|+++...
T Consensus 22 iG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D-l~~~~~v~~~~~~~~~~~g~id~li~~a 95 (278)
T PRK08277 22 LGGAMAKELARA--GAKVAILDRNQEKAEAVVAEIKAAGG-EALAVKAD-VLDKESLEQARQQILEDFGPCDILINGA 95 (278)
T ss_pred HHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 346677778774 66776665544333344444444554 34444433 456777777887777665 689888654
No 454
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=23.13 E-value=2.7e+02 Score=26.13 Aligned_cols=85 Identities=18% Similarity=-0.042 Sum_probs=52.0
Q ss_pred CceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCC----C------CCHH----HHHHHHHHHHHHhC-----------
Q 025565 55 ASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG----Q------LYPL----TVAKILKSLVEVEK----------- 109 (251)
Q Consensus 55 g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~----~------~d~~----a~a~~La~~ik~~~----------- 109 (251)
+.+|..+-.|+-. .+.++.+..+|+-++.++++|. + ++.. .-+.++++.+++.+
T Consensus 42 ~~~VlviG~GGlG-s~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 120 (392)
T PRK07878 42 NARVLVIGAGGLG-SPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFR 120 (392)
T ss_pred cCCEEEECCCHHH-HHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEecc
Confidence 3477777777643 5677888889999999998653 1 1111 12333444443333
Q ss_pred ------------CCEEEEcceeecCCcCcHHHHHHHHcCCCcccc
Q 025565 110 ------------PGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTF 142 (251)
Q Consensus 110 ------------~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 142 (251)
+|+|+...-+ ..++.+--.++..++.|++..
T Consensus 121 i~~~~~~~~~~~~D~Vvd~~d~--~~~r~~ln~~~~~~~~p~v~~ 163 (392)
T PRK07878 121 LDPSNAVELFSQYDLILDGTDN--FATRYLVNDAAVLAGKPYVWG 163 (392)
T ss_pred CChhHHHHHHhcCCEEEECCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 4777765422 134455667788899998743
No 455
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.06 E-value=1.1e+02 Score=28.47 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=18.1
Q ss_pred HHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCE
Q 025565 45 EALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADR 82 (251)
Q Consensus 45 ~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~ 82 (251)
.|.+++.+ .|.+|++++-|+..-+++++. +|||-
T Consensus 196 ~aVq~AKA-MG~rV~vis~~~~kkeea~~~---LGAd~ 229 (360)
T KOG0023|consen 196 MAVQYAKA-MGMRVTVISTSSKKKEEAIKS---LGADV 229 (360)
T ss_pred HHHHHHHH-hCcEEEEEeCCchhHHHHHHh---cCcce
Confidence 45555555 566666666665333333332 46663
No 456
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=23.02 E-value=3e+02 Score=24.04 Aligned_cols=17 Identities=6% Similarity=-0.101 Sum_probs=10.3
Q ss_pred HHHHHHHHCCCCEEEEEe
Q 025565 70 DTLRTGLAMGADRGVHVE 87 (251)
Q Consensus 70 ~~l~~~la~GaD~vi~v~ 87 (251)
.+++-|.++|+. ++.+.
T Consensus 159 ~aiqlA~~~G~~-vi~~~ 175 (329)
T cd08294 159 LVGQIAKIKGCK-VIGCA 175 (329)
T ss_pred HHHHHHHHcCCE-EEEEe
Confidence 345667778884 55544
No 457
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=23.00 E-value=4.8e+02 Score=22.23 Aligned_cols=72 Identities=7% Similarity=0.018 Sum_probs=41.7
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCc--hhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPA--QCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~--~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
..+.|+++++. |.+|+......+ ..++.++++.+.+. +++.+..| -.|.+.+...+.++.++. ..|+++.-.
T Consensus 21 G~aia~~la~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D-l~d~~~v~~~~~~~~~~~g~iD~lv~na 95 (258)
T PRK07370 21 AWGIAQQLHAA--GAELGITYLPDEKGRFEKKVRELTEPLN-PSLFLPCD-VQDDAQIEETFETIKQKWGKLDILVHCL 95 (258)
T ss_pred HHHHHHHHHHC--CCEEEEEecCcccchHHHHHHHHHhccC-cceEeecC-cCCHHHHHHHHHHHHHHcCCCCEEEEcc
Confidence 35678888875 667765433221 12344555544442 34344333 457777777777777665 589877544
No 458
>PRK07201 short chain dehydrogenase; Provisional
Probab=22.93 E-value=6.1e+02 Score=24.92 Aligned_cols=71 Identities=11% Similarity=0.105 Sum_probs=37.9
Q ss_pred HHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 43 LEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 43 le~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
.+.|.+|++. |.+|+++.-.++..++...++...|. ++..+..| -.|...+..++.++.++. ++|+++.-.
T Consensus 385 ~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D-v~~~~~~~~~~~~~~~~~g~id~li~~A 456 (657)
T PRK07201 385 RATAIKVAEA--GATVFLVARNGEALDELVAEIRAKGG-TAHAYTCD-LTDSAAVDHTVKDILAEHGHVDYLVNNA 456 (657)
T ss_pred HHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEec-CCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 4455556553 45666555444333333333434443 33333322 446777777777776665 578877644
No 459
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=22.91 E-value=4.7e+02 Score=22.14 Aligned_cols=33 Identities=27% Similarity=0.257 Sum_probs=26.6
Q ss_pred CCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeC
Q 025565 54 LASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAA 89 (251)
Q Consensus 54 ~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~ 89 (251)
.|..+-=+..|+.. .--+|++.||+++++|+.+
T Consensus 43 ~g~~~LDlFAGSGa---LGlEAlSRGA~~~~~vE~~ 75 (187)
T COG0742 43 EGARVLDLFAGSGA---LGLEALSRGAARVVFVEKD 75 (187)
T ss_pred CCCEEEEecCCccH---hHHHHHhCCCceEEEEecC
Confidence 56788888888753 5578999999999999854
No 460
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=22.84 E-value=4.1e+02 Score=23.65 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=17.4
Q ss_pred CCCEEEEcceeecCCcCcHHHHHHHHcCCCccc
Q 025565 109 KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGT 141 (251)
Q Consensus 109 ~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt 141 (251)
..|+++...| =+..+|..+|.|.++
T Consensus 251 ~a~l~I~~DS--------Gp~HlAaA~~~P~i~ 275 (334)
T TIGR02195 251 LAKAVVTNDS--------GLMHVAAALNRPLVA 275 (334)
T ss_pred hCCEEEeeCC--------HHHHHHHHcCCCEEE
Confidence 4677765443 467889999999763
No 461
>PRK00131 aroK shikimate kinase; Reviewed
Probab=22.82 E-value=59 Score=25.69 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=22.1
Q ss_pred CCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 109 KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 109 ~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
+.-++|+|...+|+. .++-.||.+||++++
T Consensus 4 ~~~i~l~G~~GsGKs--tla~~La~~l~~~~~ 33 (175)
T PRK00131 4 GPNIVLIGFMGAGKS--TIGRLLAKRLGYDFI 33 (175)
T ss_pred CCeEEEEcCCCCCHH--HHHHHHHHHhCCCEE
Confidence 345777787766653 688888999988877
No 462
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=22.81 E-value=3.3e+02 Score=20.31 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=44.5
Q ss_pred CCceEEEEeeCCch-hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCC-CE-EEEcceeecCCcCcHHHH
Q 025565 54 LASEVVAVSMGPAQ-CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKP-GL-IILGKQAIDDDCNQTGQM 130 (251)
Q Consensus 54 ~g~~V~al~~G~~~-~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~-dl-Il~G~~s~d~~~~~v~~~ 130 (251)
.|-+|+ .+|... .++.++.+....+| ++.++.- .......+..+.+.+++..+ ++ |++|..... -.+.
T Consensus 26 ~G~~V~--~lg~~~~~~~l~~~~~~~~pd-vV~iS~~-~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~-----~~~~ 96 (119)
T cd02067 26 AGFEVI--DLGVDVPPEEIVEAAKEEDAD-AIGLSGL-LTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVT-----RDFK 96 (119)
T ss_pred CCCEEE--ECCCCCCHHHHHHHHHHcCCC-EEEEecc-ccccHHHHHHHHHHHHHcCCCCCeEEEECCCCC-----hhHH
Confidence 366774 555532 45677888888888 5555522 23455667788888888766 53 455543322 2345
Q ss_pred HHHHcCC
Q 025565 131 VAGLLSW 137 (251)
Q Consensus 131 lA~~Lg~ 137 (251)
++..+|.
T Consensus 97 ~~~~~G~ 103 (119)
T cd02067 97 FLKEIGV 103 (119)
T ss_pred HHHHcCC
Confidence 6666664
No 463
>PRK08703 short chain dehydrogenase; Provisional
Probab=22.78 E-value=4.4e+02 Score=21.81 Aligned_cols=75 Identities=9% Similarity=0.007 Sum_probs=41.6
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCC-CCCHHHHHHHHHHHHHHh--CCCEEEEcce
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG-QLYPLTVAKILKSLVEVE--KPGLIILGKQ 118 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~-~~d~~a~a~~La~~ik~~--~~dlIl~G~~ 118 (251)
..+.|.+++++ |.+|+++.-.+...++...++...|.+++..+..|- ..+...+.+.+.++.++. .+|.|+....
T Consensus 19 G~~la~~l~~~--g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~~~~~id~vi~~ag 96 (239)
T PRK08703 19 GEQVAKAYAAA--GATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEATQGKLDGIVHCAG 96 (239)
T ss_pred HHHHHHHHHHc--CCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHHhCCCCCEEEEecc
Confidence 34567778774 667877766554444444555555655554444332 123344455555555443 5788876553
No 464
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=22.78 E-value=3.3e+02 Score=24.71 Aligned_cols=97 Identities=12% Similarity=0.115 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHhCCCEEE-EcceeecCCcCcHHHHHHHHcCCCcccceeeEEEecC--CCeEEEEEEeCCeEEEEEE
Q 025565 94 PLTVAKILKSLVEVEKPGLII-LGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKE--KQLAMVEREVDGGLETLEL 170 (251)
Q Consensus 94 ~~a~a~~La~~ik~~~~dlIl-~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~--~~~l~~~R~~~gG~~~~~~ 170 (251)
+......+.+.+++.++|.|+ +|.-+ ..+++-.+|.++++|++.-=+....+.+ ...+. .. .+++.....
T Consensus 63 ~~~~v~~~~~~~~~~~~d~iIaiGGGs----~~D~aK~~a~~~~~p~i~iPTT~~t~s~~s~~a~i-~~--~~~k~~~~~ 135 (339)
T cd08173 63 TYEEVEKVESSARDIGADFVIGVGGGR----VIDVAKVAAYKLGIPFISVPTAASHDGIASPRASI-KG--NGKPISIKA 135 (339)
T ss_pred CHHHHHHHHHHhhhcCCCEEEEeCCch----HHHHHHHHHHhcCCCEEEecCcccCCcccCCceEE-Ee--CCceEEecC
Confidence 445556666677777899888 56533 3458889999999998755444321100 11111 11 133333334
Q ss_pred CCCEEEEEeCCCC--CCCCCChHHHHHhc
Q 025565 171 DLPAVITTDLRLN--QPRYATLPNIMKAK 197 (251)
Q Consensus 171 ~~P~vvtv~~~~~--~pr~p~l~~i~~A~ 197 (251)
..|..+-+.+... -|+.-...+++.+-
T Consensus 136 ~~P~~vi~Dp~l~~tlP~~~~~sg~~Dal 164 (339)
T cd08173 136 KPPLAVIADTGIIAKAPRRLLAAGCGDII 164 (339)
T ss_pred CCCeEEEEcHHHHHhCCHHHHHHhHHHHH
Confidence 4787777776544 24444455566664
No 465
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=22.74 E-value=1.1e+02 Score=26.28 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCC------CEEEEcceeecCCcCcHHHHHHHHcCC
Q 025565 98 AKILKSLVEVEKP------GLIILGKQAIDDDCNQTGQMVAGLLSW 137 (251)
Q Consensus 98 a~~La~~ik~~~~------dlIl~G~~s~d~~~~~v~~~lA~~Lg~ 137 (251)
+.++++.+++.=| =+|+||.-..++| +.+++|.....|+
T Consensus 33 G~aVa~~i~~~~~~~~~~~v~vlcG~GnNGGD-G~VaAR~L~~~G~ 77 (203)
T COG0062 33 GLAVARAILREYPLGRARRVLVLCGPGNNGGD-GLVAARHLKAAGY 77 (203)
T ss_pred HHHHHHHHHHHcCcccCCEEEEEECCCCccHH-HHHHHHHHHhCCC
Confidence 4455555554422 3566666555544 4455555555453
No 466
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=22.70 E-value=5.9e+02 Score=23.24 Aligned_cols=88 Identities=19% Similarity=0.204 Sum_probs=54.0
Q ss_pred HHHHHHhhhhCCCceEE-EEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHH-hCCCEEEEcceee
Q 025565 43 LEEALRIKESGLASEVV-AVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEV-EKPGLIILGKQAI 120 (251)
Q Consensus 43 le~A~~lae~~~g~~V~-al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~-~~~dlIl~G~~s~ 120 (251)
++..+.-+.. +. .+. +=+||...--=++..+++-|+|-+++=+. .++.+.+.+.|.+..++ .++-+|++.....
T Consensus 149 i~~i~~ta~s-~~-rv~ivEvMGR~~G~LA~~~ala~ga~~iliPE~--~~~~~~~~~~i~~~~~~g~~~~vivvaEG~~ 224 (317)
T cd00763 149 IDRIRDTSSS-HQ-RISVVEVMGRHCGDIALAAGIAGGAEFIVIPEA--EFDREEVANRIKAGIERGKKHAIVVVAEGVY 224 (317)
T ss_pred HHHHHHHHhc-CC-CEEEEEeCCCChHHHHHHHHHHcCCCEEEeCCC--CCCHHHHHHHHHHHHHcCCCcEEEEEeCCCC
Confidence 4444444443 33 444 44899764233568889999998777442 56777777777766655 5688899887653
Q ss_pred cCCcCcHHHHHHHHcC
Q 025565 121 DDDCNQTGQMVAGLLS 136 (251)
Q Consensus 121 d~~~~~v~~~lA~~Lg 136 (251)
+ ...++..+-.++|
T Consensus 225 ~--~~~l~~~l~~~~g 238 (317)
T cd00763 225 D--VDELAKEIEEATG 238 (317)
T ss_pred C--HHHHHHHHHHHhC
Confidence 2 2345555555554
No 467
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=22.65 E-value=3.4e+02 Score=29.67 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 39 CEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 39 d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
.+.++...+.+++ .|.+++++...+......+ .-||+.|.+......+.+.-...|.+++++.++|.|+.|.
T Consensus 10 Geia~~iiraak~--lGi~~v~v~sd~d~~a~~v-----~~AD~~v~l~~~~~~~sy~d~e~Il~~a~~~~idaIiPG~ 81 (1201)
T TIGR02712 10 GEIAVRIIRTLRR--MGIRSVAVYSDADAASQHV-----LDADEAVCLGGAPAAESYLDIDKILAAAKKTGAQAIHPGY 81 (1201)
T ss_pred CHHHHHHHHHHHH--cCCeEEEEECCCCCCccch-----hhCCEEEEcCCCCcccCCCCHHHHHHHHHHHCCCEEEeCC
Confidence 4456666666666 4777777766543211111 1279988875321111111235677788888999998775
No 468
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=22.63 E-value=57 Score=25.31 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=21.4
Q ss_pred EEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 112 LIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 112 lIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
++|+|...+|+. .++-.||+.||++++
T Consensus 2 i~l~G~~GsGKs--tla~~la~~l~~~~~ 28 (154)
T cd00464 2 IVLIGMMGAGKT--TVGRLLAKALGLPFV 28 (154)
T ss_pred EEEEcCCCCCHH--HHHHHHHHHhCCCEE
Confidence 678887766653 688899999999877
No 469
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=22.60 E-value=2.5e+02 Score=22.21 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=32.8
Q ss_pred HHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhC-CCEEEEcceeecC
Q 025565 70 DTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEK-PGLIILGKQAIDD 122 (251)
Q Consensus 70 ~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~-~dlIl~G~~s~d~ 122 (251)
+.++++++ |+|.+|+.-.+...+ ...+..+.+++++.+ .-+|+++..+..+
T Consensus 52 ~~~~~al~-~~d~vi~~~~~~~~~-~~~~~~~~~a~~~~~~~~~v~~s~~~~~~ 103 (183)
T PF13460_consen 52 DSVKAALK-GADAVIHAAGPPPKD-VDAAKNIIEAAKKAGVKRVVYLSSAGVYR 103 (183)
T ss_dssp HHHHHHHT-TSSEEEECCHSTTTH-HHHHHHHHHHHHHTTSSEEEEEEETTGTT
T ss_pred hhhhhhhh-hcchhhhhhhhhccc-ccccccccccccccccccceeeeccccCC
Confidence 46777777 999999877543333 444556666666655 4677777665444
No 470
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=22.55 E-value=2.2e+02 Score=26.14 Aligned_cols=19 Identities=16% Similarity=0.038 Sum_probs=9.5
Q ss_pred HHHHHHHHHCCCCEEEEEe
Q 025565 69 VDTLRTGLAMGADRGVHVE 87 (251)
Q Consensus 69 ~~~l~~~la~GaD~vi~v~ 87 (251)
.++.+.+.++||.+++.+-
T Consensus 235 ~~aa~~Lk~~GA~~V~~~~ 253 (323)
T PRK02458 235 AEAAKIVEREGATEIYAVA 253 (323)
T ss_pred HHHHHHHHhCCCCcEEEEE
Confidence 3344445555555555544
No 471
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=22.51 E-value=5.5e+02 Score=22.76 Aligned_cols=67 Identities=12% Similarity=0.061 Sum_probs=42.0
Q ss_pred HHHHHHhhhhCCCceEEEEeeCCc------hhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEc
Q 025565 43 LEEALRIKESGLASEVVAVSMGPA------QCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILG 116 (251)
Q Consensus 43 le~A~~lae~~~g~~V~al~~G~~------~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G 116 (251)
++...++++. ....++ .|+-- ..+..+++|.+.|+|-+++.+-+ ..-+.-+.+.+++.+-+.|++=
T Consensus 80 ~~~~~~~r~~-~~~p~v--lm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP-----~ee~~~~~~~~~~~gi~~I~lv 151 (263)
T CHL00200 80 LSILSEVNGE-IKAPIV--IFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLP-----YEESDYLISVCNLYNIELILLI 151 (263)
T ss_pred HHHHHHHhcC-CCCCEE--EEecccHHHHhCHHHHHHHHHHcCCeEEEecCCC-----HHHHHHHHHHHHHcCCCEEEEE
Confidence 4555556543 444443 55542 24678999999999988886532 2235566677888887766553
Q ss_pred c
Q 025565 117 K 117 (251)
Q Consensus 117 ~ 117 (251)
.
T Consensus 152 ~ 152 (263)
T CHL00200 152 A 152 (263)
T ss_pred C
Confidence 3
No 472
>PRK07024 short chain dehydrogenase; Provisional
Probab=22.49 E-value=4.7e+02 Score=22.01 Aligned_cols=72 Identities=11% Similarity=-0.015 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 41 IALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 41 ~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
-..+.+.+|+++ |.+|+.+.-.++..++...++-..| ++..+..| -.|...+.+.+.++.++. .+|+++.-.
T Consensus 14 IG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~D-l~~~~~i~~~~~~~~~~~g~id~lv~~a 86 (257)
T PRK07024 14 IGQALAREYARQ--GATLGLVARRTDALQAFAARLPKAA--RVSVYAAD-VRDADALAAAAADFIAAHGLPDVVIANA 86 (257)
T ss_pred HHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHhcccCC--eeEEEEcC-CCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 345667778775 6676655433322222222221122 55555543 456777777777777765 479888654
No 473
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=22.46 E-value=2e+02 Score=25.46 Aligned_cols=52 Identities=8% Similarity=-0.179 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccce
Q 025565 89 AGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFA 143 (251)
Q Consensus 89 ~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v 143 (251)
|...++........+++.+.+.+.|+-+.+| + . ..-...+++..++|+++..
T Consensus 45 D~~~~p~~a~~~~~~lv~~~~v~~viG~~~s-~-~-~~a~~~~~~~~~ip~i~~~ 96 (333)
T cd06359 45 DDGLKPDVAKQAAERLIKRDKVDFVTGVVFS-N-V-LLAVVPPVLESGTFYISTN 96 (333)
T ss_pred CCCCChHHHHHHHHHHHhhcCCcEEEccCCc-H-H-HHHHHHHHHHcCCeEEecC
Confidence 3356777666777777877788887754433 1 1 1222346788899999754
No 474
>PRK09389 (R)-citramalate synthase; Provisional
Probab=22.43 E-value=7.2e+02 Score=24.14 Aligned_cols=68 Identities=21% Similarity=0.143 Sum_probs=39.5
Q ss_pred hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHH-HHcCCC
Q 025565 68 CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVA-GLLSWP 138 (251)
Q Consensus 68 ~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA-~~Lg~p 138 (251)
..+.++.+..+|+|++.+.+.-....|..+...+..+.+..+ +.|-=+.-.| .+-.++--+| ...|+-
T Consensus 145 l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~~~--v~l~~H~HND-~GlAvANalaAv~aGa~ 213 (488)
T PRK09389 145 LKELYKAGIEAGADRICFCDTVGILTPEKTYELFKRLSELVK--GPVSIHCHND-FGLAVANTLAALAAGAD 213 (488)
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhhcC--CeEEEEecCC-ccHHHHHHHHHHHcCCC
Confidence 345567788999999777654445789999888776654433 3332232233 3333444443 444443
No 475
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=22.41 E-value=4e+02 Score=23.39 Aligned_cols=60 Identities=17% Similarity=0.075 Sum_probs=33.1
Q ss_pred CCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-----CCCEEEEcceeecCCcCcHHHHHHHHcCCC
Q 025565 78 MGADRGVHVEAAGQLYPLTVAKILKSLVEVE-----KPGLIILGKQAIDDDCNQTGQMVAGLLSWP 138 (251)
Q Consensus 78 ~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-----~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p 138 (251)
.|.++..+...+ ....+-...++.+++++. +.|.|+++..+.+......+.+++..||.+
T Consensus 36 ~Gi~~r~~~~~~-~~~~~la~~A~~~al~~ag~~~~~Id~li~~~~~~~~~~~~~~~~l~~~lg~~ 100 (320)
T cd00830 36 TGIRERRIADPG-ETTSDLAVEAAKKALEDAGIDADDIDLIIVATSTPDYLFPATACLVQARLGAK 100 (320)
T ss_pred cCceEEeeCCCC-CCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCCcHHHHHHHHhCCC
Confidence 466665554422 112233334444444432 457777777665543456777888888875
No 476
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=22.33 E-value=5.1e+02 Score=22.34 Aligned_cols=86 Identities=12% Similarity=0.013 Sum_probs=50.5
Q ss_pred HHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCC
Q 025565 44 EEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDD 123 (251)
Q Consensus 44 e~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~ 123 (251)
-....|++++++.+|+.++-.. ..+.++.. -+.|+++..+.+........-.-+...+++.+||+++--..+.
T Consensus 18 p~l~~Lk~~~P~~~I~~l~~~~--~~~l~~~~--p~id~v~~~~~~~~~~~~~~~~~~~~~l~~~~~D~vi~~~~~~--- 90 (279)
T cd03789 18 PLLRALKARYPDARITVLAPPW--FAPLLELM--PEVDRVIVLPKKHGKLGLGARRRLARALRRRRYDLAIDLQGSL--- 90 (279)
T ss_pred HHHHHHHHHCCCCEEEEEEChh--hHHHHhcC--CccCEEEEcCCcccccchHHHHHHHHHHhhcCCCEEEECCCcc---
Confidence 3445677777788998877653 34444432 3799999876432111122223444556677899999766531
Q ss_pred cCcHHHHHHHHcCCCc
Q 025565 124 CNQTGQMVAGLLSWPQ 139 (251)
Q Consensus 124 ~~~v~~~lA~~Lg~p~ 139 (251)
-...++..++++.
T Consensus 91 ---~~~~~~~~~~~~~ 103 (279)
T cd03789 91 ---RSALLPFLAGAPR 103 (279)
T ss_pred ---HHHHHHHHhCCCe
Confidence 1234556666554
No 477
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=22.28 E-value=2.8e+02 Score=26.29 Aligned_cols=38 Identities=18% Similarity=0.057 Sum_probs=23.9
Q ss_pred HHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 100 ILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 100 ~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
.|.++++++++|+|++|....- -+--...++.+|+|++
T Consensus 59 ~l~~~a~~~~iD~Vv~g~E~~l---~~glad~~~~~Gip~~ 96 (426)
T PRK13789 59 SVQSFLKSNPFDLIVVGPEDPL---VAGFADWAAELGIPCF 96 (426)
T ss_pred HHHHHHHHcCCCEEEECCchHH---HHHHHHHHHHcCCCcC
Confidence 5567888889999999874311 0111234556888875
No 478
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=22.15 E-value=2.3e+02 Score=26.27 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=32.9
Q ss_pred HHHHH-HCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEE-EcceeecCCcCcHHHHHHHHc
Q 025565 72 LRTGL-AMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLII-LGKQAIDDDCNQTGQMVAGLL 135 (251)
Q Consensus 72 l~~~l-a~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl-~G~~s~d~~~~~v~~~lA~~L 135 (251)
+.+.+ ..|.+- ...++-..--+......+++.+++.++|+|+ +|.-| .-+++-.+|..+
T Consensus 47 v~~~L~~~gi~~-~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS----~iD~aK~ia~~~ 107 (383)
T cd08186 47 VEPALDEHGIEY-VLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGS----PIDSAKSAAILL 107 (383)
T ss_pred HHHHHHHcCCeE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcc----HHHHHHHHHHHH
Confidence 44444 467753 3333221222345566677788888999888 56533 223666666554
No 479
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=22.12 E-value=5.1e+02 Score=24.41 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhCCCEEEE--cceeecCCcCcHHHHHHHHcCCC
Q 025565 94 PLTVAKILKSLVEVEKPGLIIL--GKQAIDDDCNQTGQMVAGLLSWP 138 (251)
Q Consensus 94 ~~a~a~~La~~ik~~~~dlIl~--G~~s~d~~~~~v~~~lA~~Lg~p 138 (251)
+......-++..++.+||.|++ |.++.| .+=.++....-|
T Consensus 71 ~~~~v~~~~~~~~~~~~D~iIalGGGS~~D-----~AK~i~~~~~~~ 112 (377)
T COG1454 71 TIETVEAGAEVAREFGPDTIIALGGGSVID-----AAKAIALLAENP 112 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHH-----HHHHHHHHhhCC
Confidence 3455566667788889998774 333333 565666666555
No 480
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=21.95 E-value=1.1e+02 Score=24.74 Aligned_cols=50 Identities=24% Similarity=0.170 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcH-HHHH--HHHc-CCCcccceeeEE
Q 025565 94 PLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQT-GQMV--AGLL-SWPQGTFASKVV 147 (251)
Q Consensus 94 ~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v-~~~l--A~~L-g~p~vt~v~~l~ 147 (251)
.....+.|.+.+++.+||+|+|=.-.. .++ ..++ -..+ +.|+++-++++.
T Consensus 74 ~~~~~~~l~~~l~~~~PD~IIsThp~~----~~~~l~~lk~~~~~~~~p~~tvvTD~~ 127 (169)
T PF06925_consen 74 SRLFARRLIRLLREFQPDLIISTHPFP----AQVPLSRLKRRGRLPNIPVVTVVTDFD 127 (169)
T ss_pred HHHHHHHHHHHHhhcCCCEEEECCcch----hhhHHHHHHHhhcccCCcEEEEEcCCC
Confidence 345566777888889999999877531 123 2222 2335 577777777764
No 481
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.93 E-value=3.7e+02 Score=23.98 Aligned_cols=51 Identities=18% Similarity=-0.048 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccc
Q 025565 89 AGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTF 142 (251)
Q Consensus 89 ~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 142 (251)
|...++........+++++.+.+.|+-+.+|.. .. -...+++..++|+++.
T Consensus 50 D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~--~~-a~~~~~~~~~ip~i~~ 100 (347)
T cd06340 50 DSQGNPDIGATEAERLITEEGVVALVGAYQSAV--TL-AASQVAERYGVPFVVD 100 (347)
T ss_pred cCCCCHHHHHHHHHHHhccCCceEEecccchHh--HH-HHHHHHHHhCCCEEec
Confidence 334577776777777777667777775554422 12 2334666678998864
No 482
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=21.87 E-value=5.7e+02 Score=22.73 Aligned_cols=75 Identities=7% Similarity=-0.056 Sum_probs=47.9
Q ss_pred CHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 025565 36 NPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIIL 115 (251)
Q Consensus 36 n~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~ 115 (251)
.-....+++.+..|.++ +.+++.+++.+.. ....+....|.. ++.+... ......+...+...+++.+||+|-+
T Consensus 14 GG~e~~~~~l~~~l~~~--~~~~~v~~~~~~~--~~~~~~~~~~i~-~~~~~~~-~~~~~~~~~~l~~~l~~~~~Divh~ 87 (374)
T TIGR03088 14 GGLENGLVNLINHLPAD--RYRHAVVALTEVS--AFRKRIQRPDVA-FYALHKQ-PGKDVAVYPQLYRLLRQLRPDIVHT 87 (374)
T ss_pred CcHHHHHHHHHhhcccc--ccceEEEEcCCCC--hhHHHHHhcCce-EEEeCCC-CCCChHHHHHHHHHHHHhCCCEEEE
Confidence 33456778888888875 4567677766543 344556666764 4444322 1223445567888899999999987
Q ss_pred c
Q 025565 116 G 116 (251)
Q Consensus 116 G 116 (251)
-
T Consensus 88 ~ 88 (374)
T TIGR03088 88 R 88 (374)
T ss_pred c
Confidence 4
No 483
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=21.81 E-value=5.8e+02 Score=22.81 Aligned_cols=87 Identities=8% Similarity=-0.029 Sum_probs=51.4
Q ss_pred HHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCC---CCHHHHHHHHHHHHHHhCCCEEEEccee
Q 025565 43 LEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQ---LYPLTVAKILKSLVEVEKPGLIILGKQA 119 (251)
Q Consensus 43 le~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~---~d~~a~a~~La~~ik~~~~dlIl~G~~s 119 (251)
.-....|++.+++.+++.++--. ..+.++. .-.+|+++.++.... ......-..+...+++.+||+++.=.
T Consensus 17 tp~l~~Lk~~~P~a~I~~l~~~~--~~~l~~~--~p~vd~vi~~~~~~~~~~~~~~~~~~~l~~~lr~~~yD~vidl~-- 90 (344)
T TIGR02201 17 TPVISSLKKNYPDAKIDVLLYQE--TIPILSE--NPDINALYGLDRKKAKAGERKLANQFHLIKVLRANRYDLVVNLT-- 90 (344)
T ss_pred HHHHHHHHHHCCCCEEEEEECcC--hHHHHhc--CCCccEEEEeChhhhcchHHHHHHHHHHHHHHHhCCCCEEEECC--
Confidence 33455678777888888876643 2343332 236999998863211 11111112244556777999998542
Q ss_pred ecCCcCcHHHHHHHHcCCCc
Q 025565 120 IDDDCNQTGQMVAGLLSWPQ 139 (251)
Q Consensus 120 ~d~~~~~v~~~lA~~Lg~p~ 139 (251)
+..-...++..+|++.
T Consensus 91 ----~~~~s~ll~~l~~a~~ 106 (344)
T TIGR02201 91 ----DQWMVAILVKLLNARV 106 (344)
T ss_pred ----cchHHHHHHHhcCCCe
Confidence 2234577788888775
No 484
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=21.80 E-value=1.5e+02 Score=22.43 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHh-CCCEEEEcceeecCCcCcHHHHHHHHcC
Q 025565 96 TVAKILKSLVEVE-KPGLIILGKQAIDDDCNQTGQMVAGLLS 136 (251)
Q Consensus 96 a~a~~La~~ik~~-~~dlIl~G~~s~d~~~~~v~~~lA~~Lg 136 (251)
.....|.++.++. ++.++++|++. ||.++..+|..|.
T Consensus 49 ~~~~~l~~~~~~~~~~~i~itGHSL----GGalA~l~a~~l~ 86 (140)
T PF01764_consen 49 QILDALKELVEKYPDYSIVITGHSL----GGALASLAAADLA 86 (140)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEEETH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCccchhhccch----HHHHHHHHHHhhh
Confidence 3445666666555 47899999953 2346666665544
No 485
>PRK11914 diacylglycerol kinase; Reviewed
Probab=21.80 E-value=4.8e+02 Score=23.11 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=25.4
Q ss_pred CCceEEEE-eeCCchhHHHHHHHHHCCCCEEEEEeeCC
Q 025565 54 LASEVVAV-SMGPAQCVDTLRTGLAMGADRGVHVEAAG 90 (251)
Q Consensus 54 ~g~~V~al-~~G~~~~~~~l~~~la~GaD~vi~v~~~~ 90 (251)
.|.++..+ +-.+.++.+.++++.+.|+|.++.+..|.
T Consensus 38 ~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDG 75 (306)
T PRK11914 38 RGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDG 75 (306)
T ss_pred cCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCch
Confidence 35565533 33344567788888889999988887664
No 486
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=21.76 E-value=6.2e+02 Score=23.85 Aligned_cols=44 Identities=7% Similarity=0.011 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHHhCCC-EEEEcceeecCCcCcHHHHHHHHcCCCcc
Q 025565 92 LYPLTVAKILKSLVEVEKPG-LIILGKQAIDDDCNQTGQMVAGLLSWPQG 140 (251)
Q Consensus 92 ~d~~a~a~~La~~ik~~~~d-lIl~G~~s~d~~~~~v~~~lA~~Lg~p~v 140 (251)
.+...+...++..+-+..+. .|+..-.| ..+--++|..+|..++
T Consensus 249 l~~d~~~~lla~~ll~~~~~~~vv~~v~s-----s~~~~~ia~~~g~~v~ 293 (443)
T cd03089 249 IWGDRLLALFARDILKRNPGATIVYDVKC-----SRNLYDFIEEAGGKPI 293 (443)
T ss_pred eCHHHHHHHHHHHHHHHCCCCeEEEeccc-----chHHHHHHHHcCCeEE
Confidence 57888888888766544333 45544433 2377788888887664
No 487
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=21.70 E-value=2.7e+02 Score=23.76 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=25.9
Q ss_pred HHHHHHHCCCCEEEEEeeCC-C--CCHHHHHHHHHHHHHHhCCCEEEEcce
Q 025565 71 TLRTGLAMGADRGVHVEAAG-Q--LYPLTVAKILKSLVEVEKPGLIILGKQ 118 (251)
Q Consensus 71 ~l~~~la~GaD~vi~v~~~~-~--~d~~a~a~~La~~ik~~~~dlIl~G~~ 118 (251)
.++++-+. +|-+|+..+-. + ..+...-+.+|+.+-..+.|+|+.|++
T Consensus 167 ~i~~lr~~-~D~vIv~~H~G~e~~~~p~~~~~~la~~l~~~G~D~IiG~H~ 216 (239)
T cd07381 167 DIAEAKKK-ADIVIVSLHWGVEYSYYPTPEQRELARALIDAGADLVIGHHP 216 (239)
T ss_pred HHHHHhhc-CCEEEEEecCcccCCCCCCHHHHHHHHHHHHCCCCEEEcCCC
Confidence 34444333 67666665422 1 123334456666555568899987774
No 488
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=21.68 E-value=3.6e+02 Score=26.16 Aligned_cols=19 Identities=21% Similarity=0.543 Sum_probs=15.6
Q ss_pred HHHHHHHHhCCCEEEEcce
Q 025565 100 ILKSLVEVEKPGLIILGKQ 118 (251)
Q Consensus 100 ~La~~ik~~~~dlIl~G~~ 118 (251)
.|.++++++++|+|+.|..
T Consensus 60 ~l~~~a~~~~id~Vi~g~E 78 (486)
T PRK05784 60 EVKKVAKEVNPDLVVIGPE 78 (486)
T ss_pred HHHHHHHHhCCCEEEECCc
Confidence 4677788889999999874
No 489
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=21.60 E-value=1.9e+02 Score=26.16 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHh-CCCEEEEcceeecCCcCcHHHHHHHHcCCCcccc
Q 025565 96 TVAKILKSLVEVE-KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTF 142 (251)
Q Consensus 96 a~a~~La~~ik~~-~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 142 (251)
+-=..|=..+++. .|-+||+|+-| |-.+..++.-+|.+||+..+-.
T Consensus 74 a~rY~lwR~ir~~~~p~IILIGGas-GVGkStIA~ElA~rLgI~~vis 120 (299)
T COG2074 74 AKRYLLWRRIRKMKRPLIILIGGAS-GVGKSTIAGELARRLGIRSVIS 120 (299)
T ss_pred HHHHHHHHHHhccCCCeEEEecCCC-CCChhHHHHHHHHHcCCceeec
Confidence 3334454556665 69999999977 4456789999999999987643
No 490
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=21.58 E-value=2.5e+02 Score=24.74 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHh-----CCCEEEEcceeecCCcCcHHHHHHHHcCCC
Q 025565 97 VAKILKSLVEVE-----KPGLIILGKQAIDDDCNQTGQMVAGLLSWP 138 (251)
Q Consensus 97 ~a~~La~~ik~~-----~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p 138 (251)
...++.+++++. +.|.|++|.++.+......+.+++..||++
T Consensus 52 ~~~a~~~aL~~ag~~~~~Id~li~~~~~~~~~~~~~~~~i~~~lg~~ 98 (324)
T cd00827 52 AVEAARRALERAGIDPDDIGLLIVATESPIDKGKSAATYLAELLGLT 98 (324)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCccHHHHHHHHcCCC
Confidence 344444555442 468888888776555567888899999986
No 491
>PRK07814 short chain dehydrogenase; Provisional
Probab=21.53 E-value=5e+02 Score=21.97 Aligned_cols=72 Identities=19% Similarity=0.156 Sum_probs=42.4
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
..+.+..|.++ |.+|+.+.-.++..++..+.....| .++..+..| -.+...+.+++.++.++. ++|+|+.-.
T Consensus 23 G~~~a~~l~~~--G~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D-~~~~~~~~~~~~~~~~~~~~id~vi~~A 95 (263)
T PRK07814 23 GAAIALAFAEA--GADVLIAARTESQLDEVAEQIRAAG-RRAHVVAAD-LAHPEATAGLAGQAVEAFGRLDIVVNNV 95 (263)
T ss_pred HHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcc-CCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 34566667764 6688766554433333333333334 344444433 456777778888887775 689888644
No 492
>PRK07411 hypothetical protein; Validated
Probab=21.50 E-value=3.7e+02 Score=25.17 Aligned_cols=84 Identities=14% Similarity=-0.063 Sum_probs=53.3
Q ss_pred ceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCC----C------CCHHH----HHHHHHHHHHHh-------------
Q 025565 56 SEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG----Q------LYPLT----VAKILKSLVEVE------------- 108 (251)
Q Consensus 56 ~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~----~------~d~~a----~a~~La~~ik~~------------- 108 (251)
.+|..+-+|+-. .+.++.+...|+-++.++++|. + ++... -+.+.++.+++.
T Consensus 39 ~~VlivG~GGlG-~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~~ 117 (390)
T PRK07411 39 ASVLCIGTGGLG-SPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRL 117 (390)
T ss_pred CcEEEECCCHHH-HHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEeccc
Confidence 477777777643 5678889999999999998652 1 11111 223333333333
Q ss_pred ----------CCCEEEEcceeecCCcCcHHHHHHHHcCCCcccc
Q 025565 109 ----------KPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTF 142 (251)
Q Consensus 109 ----------~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~ 142 (251)
++|+|+.+.-+ ..++.+--.++..++.|++..
T Consensus 118 ~~~~~~~~~~~~D~Vvd~~d~--~~~r~~ln~~~~~~~~p~v~~ 159 (390)
T PRK07411 118 SSENALDILAPYDVVVDGTDN--FPTRYLVNDACVLLNKPNVYG 159 (390)
T ss_pred CHHhHHHHHhCCCEEEECCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 35888876532 234566777889999998843
No 493
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=21.42 E-value=3.9e+02 Score=25.89 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=36.9
Q ss_pred CceEEEEeeCCch--hHHHHHHHHHCCCC-EEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHH
Q 025565 55 ASEVVAVSMGPAQ--CVDTLRTGLAMGAD-RGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMV 131 (251)
Q Consensus 55 g~~V~al~~G~~~--~~~~l~~~la~GaD-~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~l 131 (251)
|..++.++.|..- +.++.+.+.+.|.+ ++|.+..=..+|.+ .|.+.+++.+. +|.+=..+.. +-++..+
T Consensus 340 G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~tlkPlD~~----~i~~sv~kt~~-vvtvEE~~~~---gGlG~~v 411 (464)
T PRK11892 340 GKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRTIRPMDTE----TIVESVKKTNR-LVTVEEGWPQ---SGVGAEI 411 (464)
T ss_pred CCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCCHH----HHHHHHHhcCe-EEEEeCCCcC---CcHHHHH
Confidence 6688888888742 33444455556765 33333211234544 45555666554 3433333222 2255655
Q ss_pred HHHc
Q 025565 132 AGLL 135 (251)
Q Consensus 132 A~~L 135 (251)
|+.|
T Consensus 412 a~~l 415 (464)
T PRK11892 412 AARV 415 (464)
T ss_pred HHHH
Confidence 5555
No 494
>PRK12743 oxidoreductase; Provisional
Probab=21.35 E-value=5e+02 Score=21.85 Aligned_cols=72 Identities=11% Similarity=0.028 Sum_probs=43.3
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCch-hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHh-CCCEEEEcc
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPAQ-CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVE-KPGLIILGK 117 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~~-~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~-~~dlIl~G~ 117 (251)
..+.|.+++++ |.+|..+...+.. .+....++...|. ++..+..| -.++......+.++.++. .+|.|++..
T Consensus 15 G~~~a~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D-l~~~~~~~~~~~~~~~~~~~id~li~~a 88 (256)
T PRK12743 15 GKACALLLAQQ--GFDIGITWHSDEEGAKETAEEVRSHGV-RAEIRQLD-LSDLPEGAQALDKLIQRLGRIDVLVNNA 88 (256)
T ss_pred HHHHHHHHHHC--CCEEEEEeCCChHHHHHHHHHHHhcCC-ceEEEEcc-CCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 35677788875 6677665544432 2333444445564 44444433 456777777777777765 579888755
No 495
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.33 E-value=4.9e+02 Score=21.80 Aligned_cols=93 Identities=12% Similarity=0.008 Sum_probs=49.4
Q ss_pred CHHhHHHHHHHHHhhhhCCCceEEEEeeCCch--hHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEE
Q 025565 36 NPFCEIALEEALRIKESGLASEVVAVSMGPAQ--CVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLI 113 (251)
Q Consensus 36 n~~d~~Ale~A~~lae~~~g~~V~al~~G~~~--~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlI 113 (251)
|||....+....+.+++ .|..+....-+... ....++.+..+++|-++..... .+.. .+.+.+++.+.-+|
T Consensus 11 ~~~~~~~~~~i~~~a~~-~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~--~~~~----~~~~~~~~~~ipvV 83 (269)
T cd06281 11 NPLLAQLFSGAEDRLRA-AGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGD--ERDP----ELVDALASLDLPIV 83 (269)
T ss_pred cccHHHHHHHHHHHHHH-cCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCC--CCcH----HHHHHHHhCCCCEE
Confidence 66776667666666666 57666544333211 2345677778888888876421 1211 12223444455666
Q ss_pred EEcce------eecCCcCcHHHHHHHHc
Q 025565 114 ILGKQ------AIDDDCNQTGQMVAGLL 135 (251)
Q Consensus 114 l~G~~------s~d~~~~~v~~~lA~~L 135 (251)
+++.. +.+.+..+.+..++.+|
T Consensus 84 ~i~~~~~~~~~~V~~d~~~~g~~a~~~l 111 (269)
T cd06281 84 LLDRDMGGGADAVLFDHAAGMRQAVEYL 111 (269)
T ss_pred EEecccCCCCCEEEECcHHHHHHHHHHH
Confidence 66542 23334444444444444
No 496
>PRK09072 short chain dehydrogenase; Provisional
Probab=21.31 E-value=5e+02 Score=21.89 Aligned_cols=71 Identities=13% Similarity=0.035 Sum_probs=40.9
Q ss_pred HHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEcc
Q 025565 42 ALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGK 117 (251)
Q Consensus 42 Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~ 117 (251)
..+.+.+++++ |.+|+++.-.++..++...+ +..+ .++..+..| ..|............+...+|.++...
T Consensus 18 G~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~-~~~~-~~~~~~~~D-~~d~~~~~~~~~~~~~~~~id~lv~~a 88 (263)
T PRK09072 18 GQALAEALAAA--GARLLLVGRNAEKLEALAAR-LPYP-GRHRWVVAD-LTSEAGREAVLARAREMGGINVLINNA 88 (263)
T ss_pred HHHHHHHHHHC--CCEEEEEECCHHHHHHHHHH-HhcC-CceEEEEcc-CCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 35667777775 67888877665433333233 2333 355555543 446666666555554323689888765
No 497
>PRK03202 6-phosphofructokinase; Provisional
Probab=21.31 E-value=6.4e+02 Score=23.07 Aligned_cols=76 Identities=18% Similarity=0.178 Sum_probs=52.5
Q ss_pred eEEEE-eeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHH-hCCCEEEEcceeecCCcCcHHHHHHHH
Q 025565 57 EVVAV-SMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEV-EKPGLIILGKQAIDDDCNQTGQMVAGL 134 (251)
Q Consensus 57 ~V~al-~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~-~~~dlIl~G~~s~d~~~~~v~~~lA~~ 134 (251)
.+..+ +||...--=++..+++-|+|-+++=+. .++.+...+.+.+..++ .++-+|++.....+ ...+.-.+.++
T Consensus 162 rv~iVEvMGR~~G~LAl~~ala~~a~~iliPE~--~~~~~~l~~~i~~r~~~g~~~~vivvsEg~~~--~~~l~~~i~~~ 237 (320)
T PRK03202 162 RVFIVEVMGRHAGDLALHAGIAGGAEVILIPEV--PFDIEELCAKIKKGRERGKKHAIIVVAEGVMP--AEELAKEIEER 237 (320)
T ss_pred CEEEEEECCCChHHHHHHHHHhcCCCEEEeCCC--CCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCC--HHHHHHHHHHH
Confidence 45544 888764344678899999998877442 56777777877776665 57889999876644 23466666666
Q ss_pred cC
Q 025565 135 LS 136 (251)
Q Consensus 135 Lg 136 (251)
++
T Consensus 238 ~~ 239 (320)
T PRK03202 238 TG 239 (320)
T ss_pred hC
Confidence 66
No 498
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=21.23 E-value=4.1e+02 Score=23.87 Aligned_cols=76 Identities=21% Similarity=0.229 Sum_probs=45.0
Q ss_pred CHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHH-HHHCCCCE-EEEEeeCCCCCHHHHHHHHHHHHHHhCCCEE
Q 025565 36 NPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRT-GLAMGADR-GVHVEAAGQLYPLTVAKILKSLVEVEKPGLI 113 (251)
Q Consensus 36 n~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~-~la~GaD~-vi~v~~~~~~d~~a~a~~La~~ik~~~~dlI 113 (251)
.+.|...|+++.++.+. | -+..+.+|+++ .+++ +-.+|.+. -+.+-+.. +...-+..-..++++.+.|.+
T Consensus 20 ~~~d~~vl~A~~~~~~~--~-~~~~iLvG~~~---~I~~~~~~~~l~~~~ieIi~~~--~~~~s~~~a~~lv~~G~aD~~ 91 (294)
T TIGR02706 20 VAQDEPVLEAVKEAKEH--G-IARAILVGDEE---KINEIAKKIGMNLDDVEIVNAP--SPKKAALLAVRLVSTGKADML 91 (294)
T ss_pred CCCCHHHHHHHHHHHHC--C-CceEEEECCHH---HHHHHHHHcCCCccCcEEECCC--CcHHHHHHHHHHHHCCCCCEE
Confidence 34588889998888875 2 35677899863 4444 33455431 12222221 222223334467788899999
Q ss_pred EEccee
Q 025565 114 ILGKQA 119 (251)
Q Consensus 114 l~G~~s 119 (251)
+.|..+
T Consensus 92 vsg~~~ 97 (294)
T TIGR02706 92 MKGLVD 97 (294)
T ss_pred EeCCcC
Confidence 988843
No 499
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=21.17 E-value=3.7e+02 Score=24.23 Aligned_cols=59 Identities=12% Similarity=0.175 Sum_probs=40.0
Q ss_pred ceEEEEeeCCchhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhCCCEEEEccee
Q 025565 56 SEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQA 119 (251)
Q Consensus 56 ~~V~al~~G~~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~~dlIl~G~~s 119 (251)
.++..+++.+..+.+.+++|.+.|+..++.++. .+. +...+.|.+.+++ +.+-++|-.+
T Consensus 64 ~Dlavi~vpa~~v~~~l~e~~~~Gvk~avIis~--Gf~-e~~~~~l~~~a~~--~girilGPNc 122 (286)
T TIGR01019 64 ANASVIFVPAPFAADAIFEAIDAGIELIVCITE--GIP-VHDMLKVKRYMEE--SGTRLIGPNC 122 (286)
T ss_pred CCEEEEecCHHHHHHHHHHHHHCCCCEEEEECC--CCC-HHHHHHHHHHHHH--cCCEEECCCC
Confidence 367788888887889999999999999999874 332 2233556666664 3444444433
No 500
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=21.16 E-value=4.5e+02 Score=24.40 Aligned_cols=69 Identities=20% Similarity=0.155 Sum_probs=42.8
Q ss_pred CHHhHHHHHHHHHhhhhCCCceEEEEe----eCC--chhHHHHHHHHHCCCCEEEEEeeCCCCCHHHHHHHHHHHHHHhC
Q 025565 36 NPFCEIALEEALRIKESGLASEVVAVS----MGP--AQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEK 109 (251)
Q Consensus 36 n~~d~~Ale~A~~lae~~~g~~V~al~----~G~--~~~~~~l~~~la~GaD~vi~v~~~~~~d~~a~a~~La~~ik~~~ 109 (251)
+.|+.+-++++.+++-+ .|.++.+.+ ... +...+.++.+..+|+|.++.-+ + .+-.++++..
T Consensus 44 ~nfs~~~l~e~i~~ah~-~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~D-p----------g~i~l~~e~~ 111 (347)
T COG0826 44 LNFSVEDLAEAVELAHS-AGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVAD-P----------GLIMLARERG 111 (347)
T ss_pred ccCCHHHHHHHHHHHHH-cCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcC-H----------HHHHHHHHhC
Confidence 33555558899999887 676665432 111 1235789999999999888743 2 3344555556
Q ss_pred CCEEEEc
Q 025565 110 PGLIILG 116 (251)
Q Consensus 110 ~dlIl~G 116 (251)
||+=+-.
T Consensus 112 p~l~ih~ 118 (347)
T COG0826 112 PDLPIHV 118 (347)
T ss_pred CCCcEEE
Confidence 5543333
Done!