Query 025567
Match_columns 250
No_of_seqs 161 out of 229
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 12:56:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025567.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025567hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j2jb_ a.7.8.1 (B:) ADP-ribos 24.9 69 0.005 19.3 5.4 32 133-164 5-36 (41)
2 d1sjpa2 c.8.5.1 (A:189-372) Gr 20.5 49 0.0035 25.5 4.3 31 132-162 152-182 (184)
3 d1kida_ c.8.5.1 (A:) GroEL, A 17.1 63 0.0046 25.1 4.2 32 132-163 160-191 (193)
4 d2ptfa1 b.45.1.4 (A:15-220) Un 11.1 82 0.006 24.6 3.3 46 117-162 160-205 (206)
5 d1t3wa_ a.236.1.1 (A:) DNA pri 9.9 88 0.0064 22.0 2.8 8 133-140 103-110 (134)
6 d1k4ta1 a.2.8.1 (A:641-712) Eu 9.9 2.4E+02 0.018 18.6 6.9 39 133-171 23-64 (72)
7 d1vaja1 d.309.1.1 (A:3-205) Hy 8.8 49 0.0036 26.1 1.0 11 101-111 85-95 (203)
8 d1zq7a1 d.309.1.1 (A:1-199) Hy 7.8 59 0.0043 25.6 1.0 11 101-111 82-92 (199)
9 d1r8ia_ a.8.7.1 (A:) Typo IV s 7.5 4E+02 0.029 19.3 8.5 38 131-168 125-162 (187)
10 d1wsca1 d.309.1.1 (A:3-227) Hy 7.2 64 0.0047 25.9 1.0 11 101-111 94-104 (225)
No 1
>d1j2jb_ a.7.8.1 (B:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.91 E-value=69 Score=19.31 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 025567 133 AEKEELKKQLKKTNDPNAVDKLKKRISWIDKQ 164 (250)
Q Consensus 133 ~E~~~Lkk~Lkk~kd~~~~e~lk~~L~r~e~q 164 (250)
.|...|=..|=+.++|++.+...++|..|..+
T Consensus 5 EeksklL~~LLkS~~PeDLqaANrLIK~mVke 36 (41)
T d1j2jb_ 5 EEKSKMLARLLKSSHPEDLRAANKLIKEMVQE 36 (41)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 56777888888899999999999999998654
No 2
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Probab=20.47 E-value=49 Score=25.50 Aligned_cols=31 Identities=10% Similarity=0.375 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 025567 132 PAEKEELKKQLKKTNDPNAVDKLKKRISWID 162 (250)
Q Consensus 132 ~~E~~~Lkk~Lkk~kd~~~~e~lk~~L~r~e 162 (250)
..-+++|+.+|..+.++.+++.|+..|.+|.
T Consensus 152 ~~Ri~~Lk~~l~~~~~~~e~~~L~eRLAkLs 182 (184)
T d1sjpa2 152 AGRVAQIRQEIENSDSDYDREKLQERLAKLA 182 (184)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3457789999999999999999999998874
No 3
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]}
Probab=17.08 E-value=63 Score=25.09 Aligned_cols=32 Identities=13% Similarity=0.337 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 025567 132 PAEKEELKKQLKKTNDPNAVDKLKKRISWIDK 163 (250)
Q Consensus 132 ~~E~~~Lkk~Lkk~kd~~~~e~lk~~L~r~e~ 163 (250)
+.-+.+|+.+|..+.++.+++.|+..|.+|..
T Consensus 160 ~~Ri~~Lk~~l~~~~~~~~~e~L~eRlakLsG 191 (193)
T d1kida_ 160 QGRVAQIRQQIEEATSDYDREKLQERVAKLAG 191 (193)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Confidence 44577899999999899999999999988853
No 4
>d2ptfa1 b.45.1.4 (A:15-220) Uncharacterized protein MTH863 {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=11.11 E-value=82 Score=24.57 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=32.9
Q ss_pred hhhhhccccccccCchHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 025567 117 EGFRKRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRISWID 162 (250)
Q Consensus 117 ~~f~k~Y~FL~d~~r~~E~~~Lkk~Lkk~kd~~~~e~lk~~L~r~e 162 (250)
...--+|..|++....+||+-|.-.+++|-.+.+++.+...+..++
T Consensus 160 aVlaTRL~~l~~eki~~ei~yl~~~I~KtgG~~E~eA~~~l~e~i~ 205 (206)
T d2ptfa1 160 LIAYTRAEFSDPLVLRERIAEMNRVARKVGGPREKEAMRRIIQALE 205 (206)
T ss_dssp HHHHHTC----CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 3456778888776567899999999999999999987776666553
No 5
>d1t3wa_ a.236.1.1 (A:) DNA primase DnaG, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=9.92 E-value=88 Score=21.98 Aligned_cols=8 Identities=38% Similarity=0.393 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 025567 133 AEKEELKK 140 (250)
Q Consensus 133 ~E~~~Lkk 140 (250)
.++++|..
T Consensus 103 ~~~~~L~~ 110 (134)
T d1t3wa_ 103 LRQEELIA 110 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 33333333
No 6
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.86 E-value=2.4e+02 Score=18.62 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhcCCHH---HHHHHHHHHHHHHHHHHHHHhh
Q 025567 133 AEKEELKKQLKKTNDPN---AVDKLKKRISWIDKQLRFESTK 171 (250)
Q Consensus 133 ~E~~~Lkk~Lkk~kd~~---~~e~lk~~L~r~e~q~k~~~~k 171 (250)
.|+..++...+...+.. ..+..+..|+|++.|+...+..
T Consensus 23 ~e~K~ak~d~k~~~~~k~k~~~ekKkK~leRL~EQL~KLevq 64 (72)
T d1k4ta1 23 RDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQ 64 (72)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444433 2466788888888888765543
No 7
>d1vaja1 d.309.1.1 (A:3-205) Hypothetical protein PH0010 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=8.77 E-value=49 Score=26.14 Aligned_cols=11 Identities=45% Similarity=0.791 Sum_probs=9.0
Q ss_pred CCCCCCcccCC
Q 025567 101 VVRDPRFESLC 111 (250)
Q Consensus 101 ~~RDPRFd~l~ 111 (250)
-..||||.|+.
T Consensus 85 A~~DpRF~Pl~ 95 (203)
T d1vaja1 85 AVDDPRFPPVK 95 (203)
T ss_dssp HHCCTTSCCCC
T ss_pred HhCCCCCCCCC
Confidence 45799999986
No 8
>d1zq7a1 d.309.1.1 (A:1-199) Hypothetical protein MM0484 {Methanosarcina mazei [TaxId: 2209]}
Probab=7.76 E-value=59 Score=25.64 Aligned_cols=11 Identities=45% Similarity=0.866 Sum_probs=9.1
Q ss_pred CCCCCCcccCC
Q 025567 101 VVRDPRFESLC 111 (250)
Q Consensus 101 ~~RDPRFd~l~ 111 (250)
-.+||||.++.
T Consensus 82 A~~DpRF~pl~ 92 (199)
T d1zq7a1 82 ATRDPRFPTVE 92 (199)
T ss_dssp HHSCTTSCCCC
T ss_pred HhCCCCCCCCC
Confidence 46799999986
No 9
>d1r8ia_ a.8.7.1 (A:) Typo IV secretion system protein TraC {Escherichia coli [TaxId: 562]}
Probab=7.48 E-value=4e+02 Score=19.28 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=30.8
Q ss_pred chHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Q 025567 131 LPAEKEELKKQLKKTNDPNAVDKLKKRISWIDKQLRFE 168 (250)
Q Consensus 131 r~~E~~~Lkk~Lkk~kd~~~~e~lk~~L~r~e~q~k~~ 168 (250)
|-..|..|..+|..++|+.+..+|+..|+-....+..+
T Consensus 125 rl~~i~~L~~~I~~a~D~K~~~DLq~rI~~E~a~iqne 162 (187)
T d1r8ia_ 125 ELSDMQALTEQIKSTPDLKSIADLQARIQTSQGAIQGE 162 (187)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999988887665555443
No 10
>d1wsca1 d.309.1.1 (A:3-227) Hypothetical protein ST0229 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=7.17 E-value=64 Score=25.93 Aligned_cols=11 Identities=45% Similarity=0.848 Sum_probs=8.9
Q ss_pred CCCCCCcccCC
Q 025567 101 VVRDPRFESLC 111 (250)
Q Consensus 101 ~~RDPRFd~l~ 111 (250)
-..||||.|+.
T Consensus 94 A~~DpRF~Pl~ 104 (225)
T d1wsca1 94 AFSDPRFPPLS 104 (225)
T ss_dssp HHTCTTSCCCC
T ss_pred HhCCCCcCCCC
Confidence 46799998884
Done!