BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025568
         (250 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
           Neapolitana In Complex With Alpha-D-Glucose
          Length = 721

 Score = 28.5 bits (62), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 47/116 (40%), Gaps = 22/116 (18%)

Query: 144 NTQSISLGRGTNGHELKQENLKCYVMGFDPETLQRCAKLRSREAVNLVEKHSCALFGDGQ 203
           N  S    R +N  +L++     Y  G +   L     LR+ EA+ L E    ALFG GQ
Sbjct: 306 NAPSFKNYRYSNKPDLEKHAKVAYEAGAEGVVL-----LRNEEALPLSENSKIALFGTGQ 360

Query: 204 -------TGLLDTDEVILTSFSSLKRLVLEAIAFGSFLWD---AEEYADAVYKLKE 249
                  TG  DT      S       +LE I      +D   A+ Y D + K++E
Sbjct: 361 IETIKGGTGSGDTHPRYAIS-------ILEGIKERGLNFDEELAKTYEDYIKKMRE 409


>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
           Neapolitana In Complex With Glycerol
 pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
           Neapolitana In Complex With Glucose
          Length = 721

 Score = 28.5 bits (62), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 47/116 (40%), Gaps = 22/116 (18%)

Query: 144 NTQSISLGRGTNGHELKQENLKCYVMGFDPETLQRCAKLRSREAVNLVEKHSCALFGDGQ 203
           N  S    R +N  +L++     Y  G +   L     LR+ EA+ L E    ALFG GQ
Sbjct: 306 NAPSFKNYRYSNKPDLEKHAKVAYEAGAEGVVL-----LRNEEALPLSENSKIALFGTGQ 360

Query: 204 -------TGLLDTDEVILTSFSSLKRLVLEAIAFGSFLWD---AEEYADAVYKLKE 249
                  TG  DT      S       +LE I      +D   A+ Y D + K++E
Sbjct: 361 IETIKGGTGSGDTHPRYAIS-------ILEGIKERGLNFDEELAKTYEDYIKKMRE 409


>pdb|3HLK|A Chain A, Crystal Structure Of Human Mitochondrial Acyl-Coa
           Thioesterase (Acot2)
 pdb|3HLK|B Chain B, Crystal Structure Of Human Mitochondrial Acyl-Coa
           Thioesterase (Acot2)
          Length = 446

 Score = 28.1 bits (61), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 85  YVASILYGYFLKSASLRYYLEECLASAHQDLHLTHRNSLQFPEAWSYGLKQNQVVGCVNN 144
           Y AS+L G      +L YY  E L    + LHL +     F EA +Y L   +V G    
Sbjct: 190 YRASLLAGKGFAVXALAYYNYEDLPKTXETLHLEY-----FEEAXNYLLSHPEVKGPGVG 244

Query: 145 TQSISLG 151
              IS G
Sbjct: 245 LLGISKG 251


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,358,160
Number of Sequences: 62578
Number of extensions: 289248
Number of successful extensions: 787
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 787
Number of HSP's gapped (non-prelim): 4
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)