Query 025568
Match_columns 250
No_of_seqs 96 out of 115
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 07:10:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025568.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025568hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05542 DUF760: Protein of un 99.9 2E-25 4.4E-30 172.4 6.1 72 35-109 14-86 (86)
2 PF05542 DUF760: Protein of un 97.9 6.3E-05 1.4E-09 58.3 7.3 76 163-239 2-77 (86)
3 PF08763 Ca_chan_IQ: Voltage g 77.2 2.4 5.3E-05 28.6 2.4 25 78-102 3-27 (35)
4 PF12037 DUF3523: Domain of un 44.0 34 0.00074 32.4 4.3 27 168-194 26-60 (276)
5 KOG0742 AAA+-type ATPase [Post 27.7 1.3E+02 0.0028 31.1 5.6 28 169-196 71-106 (630)
6 PF07739 TipAS: TipAS antibiot 19.4 1E+02 0.0022 23.6 2.5 20 41-60 53-72 (118)
7 PF14875 PIP49_N: N-term cyste 17.5 1.5E+02 0.0033 25.6 3.4 38 27-64 110-148 (158)
8 PF11226 DUF3022: Protein of u 16.7 76 0.0016 26.3 1.3 38 165-202 49-90 (111)
9 PF12476 DUF3696: Protein of u 15.8 74 0.0016 22.1 0.9 11 24-34 28-38 (52)
10 COG1048 AcnA Aconitase A [Ener 15.5 2.1E+02 0.0046 31.3 4.4 54 170-223 306-362 (861)
No 1
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=99.92 E-value=2e-25 Score=172.41 Aligned_cols=72 Identities=29% Similarity=0.419 Sum_probs=67.1
Q ss_pred cchhhcccCcHHHHHHHHHHHHHhhccc-cCCCCCCCcceEEechhhhhhHHHHHhhhhHhhhhhhhHhHHHHHHh
Q 025568 35 KDWELESIHEFEVLEMIREHISTVIGLR-ANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEECLA 109 (250)
Q Consensus 35 ~~~~Le~~hS~Ev~emI~~hl~~vLG~~-~~~~~~~~~~~~~isr~~Lg~lyAAsmM~GYFLr~~eqR~~LE~sl~ 109 (250)
.-..++++|||||+|+|++||.++||++ |++.++ ++++++|++||||||++||+|||||++|+|++||++|+
T Consensus 14 ~~~~l~~~~s~ev~e~m~~~v~~llG~l~p~~~~~---~~i~~s~~~La~L~~~~mm~GYfLr~~E~R~~Le~sL~ 86 (86)
T PF05542_consen 14 RIQQLSEPASPEVLEAMKQHVSGLLGNLSPSDQFN---VTIQTSRENLAQLLAWSMMTGYFLRNAEQRLELERSLK 86 (86)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHcCCCCcccCc---ceeEECHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence 3467999999999999999999999999 877655 89999999999999999999999999999999999985
No 2
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=97.86 E-value=6.3e-05 Score=58.33 Aligned_cols=76 Identities=26% Similarity=0.369 Sum_probs=69.1
Q ss_pred hhhhhhhcCCHHHHHHHhhhhhHHHHHHHHHhhhhhcCCCCCCCCCCCceEEechhhhHHHHHHHHhhhhhhhhhhh
Q 025568 163 NLKCYVMGFDPETLQRCAKLRSREAVNLVEKHSCALFGDGQTGLLDTDEVILTSFSSLKRLVLEAIAFGSFLWDAEE 239 (250)
Q Consensus 163 ~Lr~YVm~fD~eTLqr~A~irSkEav~liEkht~ALFG~~~~g~~~~dE~i~isfs~LkrLVLEAvaFGSFLwDvEs 239 (250)
.|=.||.+.+||++++.++..|.|++..|++|+..+-|.-. -....+-.|.++-..|-+|..=++.+|=|||.+|-
T Consensus 2 ~L~~yi~~l~pe~~~~l~~~~s~ev~e~m~~~v~~llG~l~-p~~~~~~~i~~s~~~La~L~~~~mm~GYfLr~~E~ 77 (86)
T PF05542_consen 2 DLLQYIQSLKPERIQQLSEPASPEVLEAMKQHVSGLLGNLS-PSDQFNVTIQTSRENLAQLLAWSMMTGYFLRNAEQ 77 (86)
T ss_pred hHHHHHHHCCHHHHHHhhccCCHHHHHHHHHHHHHHHcCCC-CcccCcceeEECHHHHHHHHHHHHHHhHHHHHHHH
Confidence 57789999999999999999999999999999999999875 23456778999999999999999999999999884
No 3
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=77.21 E-value=2.4 Score=28.59 Aligned_cols=25 Identities=16% Similarity=0.433 Sum_probs=20.3
Q ss_pred hhhhhhHHHHHhhhhHhhhhhhhHh
Q 025568 78 RLRLGRVYVASILYGYFLKSASLRY 102 (250)
Q Consensus 78 r~~Lg~lyAAsmM~GYFLr~~eqR~ 102 (250)
..++|++|||=|++-||-+.-..|.
T Consensus 3 ~~TVGK~YAt~lI~dyfr~~K~rk~ 27 (35)
T PF08763_consen 3 EVTVGKFYATLLIQDYFRQFKKRKE 27 (35)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999987666554
No 4
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=44.04 E-value=34 Score=32.39 Aligned_cols=27 Identities=44% Similarity=0.759 Sum_probs=20.3
Q ss_pred hhcCCHHHHHHHhhhh--------hHHHHHHHHHh
Q 025568 168 VMGFDPETLQRCAKLR--------SREAVNLVEKH 194 (250)
Q Consensus 168 Vm~fD~eTLqr~A~ir--------SkEav~liEkh 194 (250)
--+|||+.|.|.|+-- .|+|.+|+-+|
T Consensus 26 ~~~FDP~aLERaAkAlrel~~S~~Ak~afel~k~Q 60 (276)
T PF12037_consen 26 ASGFDPEALERAAKALRELNSSPHAKKAFELMKKQ 60 (276)
T ss_pred cCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Confidence 3589999999999853 56677776555
No 5
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=27.70 E-value=1.3e+02 Score=31.07 Aligned_cols=28 Identities=36% Similarity=0.618 Sum_probs=22.6
Q ss_pred hcCCHHHHHHHhhh--------hhHHHHHHHHHhhh
Q 025568 169 MGFDPETLQRCAKL--------RSREAVNLVEKHSC 196 (250)
Q Consensus 169 m~fD~eTLqr~A~i--------rSkEav~liEkht~ 196 (250)
-+|||+.|.|.|+- -+|++.+++.+|-+
T Consensus 71 ~gFDpeaLERaAKAlrein~s~~aK~vfel~r~qE~ 106 (630)
T KOG0742|consen 71 SGFDPEALERAAKALREINHSPYAKDVFELARMQEQ 106 (630)
T ss_pred cCCChHHHHHHHHHHHhhccCccHHHHHHHHHHHHH
Confidence 48999999999984 36888888876644
No 6
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=19.36 E-value=1e+02 Score=23.61 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=16.7
Q ss_pred ccCcHHHHHHHHHHHHHhhc
Q 025568 41 SIHEFEVLEMIREHISTVIG 60 (250)
Q Consensus 41 ~~hS~Ev~emI~~hl~~vLG 60 (250)
.|.|+||.++|++|...+.-
T Consensus 53 ~p~s~evq~l~~~~~~~~~~ 72 (118)
T PF07739_consen 53 DPDSPEVQELAERWMELINQ 72 (118)
T ss_dssp -TT-HHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHH
Confidence 48899999999999999983
No 7
>PF14875 PIP49_N: N-term cysteine-rich ER, FAM69
Probab=17.48 E-value=1.5e+02 Score=25.63 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=28.4
Q ss_pred CccccCCCcchhhcccCc-HHHHHHHHHHHHHhhccccC
Q 025568 27 GRLEIWPSKDWELESIHE-FEVLEMIREHISTVIGLRAN 64 (250)
Q Consensus 27 grv~~wP~~~~~Le~~hS-~Ev~emI~~hl~~vLG~~~~ 64 (250)
-.-+.||.++..+...-| .|-.+|+.++|..-||..++
T Consensus 110 ~~~~~~~~~e~~~~~~Ps~~ef~eMV~~~lk~~lG~~~~ 148 (158)
T PF14875_consen 110 FEPLSWPRSELVLFDKPSMEEFREMVKSFLKNKLGDQLS 148 (158)
T ss_pred cccccccccccccCCCCCHHHHHHHHHHHHHHHhCCCCC
Confidence 334578877665544445 56799999999999999875
No 8
>PF11226 DUF3022: Protein of unknown function (DUF3022); InterPro: IPR021389 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=16.74 E-value=76 Score=26.35 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=24.9
Q ss_pred hhh-hhcCCHHHHHHHhhhhhHHHH---HHHHHhhhhhcCCC
Q 025568 165 KCY-VMGFDPETLQRCAKLRSREAV---NLVEKHSCALFGDG 202 (250)
Q Consensus 165 r~Y-Vm~fD~eTLqr~A~irSkEav---~liEkht~ALFG~~ 202 (250)
||= +..|||.+|+|||-|-...=. ..+--++++-||+-
T Consensus 49 R~~v~lrf~~~~l~RYaald~~~R~Rv~a~L~a~v~~~l~~l 90 (111)
T PF11226_consen 49 RCAVDLRFDPDVLARYAALDTAARARVHARLRAYVRATLDSL 90 (111)
T ss_pred eEEEEEEECHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 443 357999999999865443322 34455677778773
No 9
>PF12476 DUF3696: Protein of unknown function (DUF3696); InterPro: IPR022532 This domain is found in bacteria and archaea, and is approximately 50 amino acids in length.
Probab=15.81 E-value=74 Score=22.13 Aligned_cols=11 Identities=45% Similarity=0.921 Sum_probs=9.7
Q ss_pred ccCCccccCCC
Q 025568 24 IYNGRLEIWPS 34 (250)
Q Consensus 24 ~~~grv~~wP~ 34 (250)
..+|+++.||.
T Consensus 28 d~~G~l~~WP~ 38 (52)
T PF12476_consen 28 DEDGRLSNWPE 38 (52)
T ss_pred CCCCCCccCCC
Confidence 57999999995
No 10
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=15.47 E-value=2.1e+02 Score=31.31 Aligned_cols=54 Identities=30% Similarity=0.238 Sum_probs=39.0
Q ss_pred cCCHHHHHHH-hhhhhHHHHHHHHHhhhhh--cCCCCCCCCCCCceEEechhhhHHH
Q 025568 170 GFDPETLQRC-AKLRSREAVNLVEKHSCAL--FGDGQTGLLDTDEVILTSFSSLKRL 223 (250)
Q Consensus 170 ~fD~eTLqr~-A~irSkEav~liEkht~AL--FG~~~~g~~~~dE~i~isfs~LkrL 223 (250)
-.|.+|+.-. +|-|+.|++.++|+..+|. |..+.+..-.=+++|.++.|.++..
T Consensus 306 PiDe~tl~YL~~tgR~~~~i~lve~y~~~~~l~~~~~~~~a~Y~~~lelDLS~v~p~ 362 (861)
T COG1048 306 PIDEETLDYLRLTGRSEEQVALVEAYAKAQGLWYDPADKDAEYDKVLELDLSTVEPS 362 (861)
T ss_pred CCCHHHHHHHHHhCCchHHHHHHHHHHHHhcccCCccccCCccceeEEEEhhhCccc
Confidence 3578888754 7899999999999999974 7776543344566777777665443
Done!