Query 025568
Match_columns 250
No_of_seqs 96 out of 115
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 12:57:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025568.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025568hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dve_B Voltage-dependent N-typ 59.4 3.5 0.00012 24.6 1.1 19 80-98 1-19 (23)
2 3dvk_B Voltage-dependent R-typ 54.6 6.3 0.00022 23.5 1.7 19 80-98 2-20 (23)
3 3bxl_B CAM, voltage-dependent 41.7 14 0.0005 22.6 1.9 20 83-102 1-20 (26)
4 3g43_E Voltage-dependent L-typ 36.3 11 0.00038 28.6 1.0 20 77-96 56-75 (81)
5 2xf7_A GP23.1; viral protein; 27.4 15 0.00051 25.4 0.3 21 88-108 4-24 (51)
6 2kbv_A Sodium/hydrogen exchang 16.1 38 0.0013 20.8 0.4 22 213-238 5-27 (28)
7 2liu_A CURA; holo state, trans 14.2 1.4E+02 0.0047 20.7 3.1 25 39-63 14-38 (99)
8 2qfa_B Borealin; three-helical 9.5 1.7E+02 0.0057 20.9 2.2 38 160-199 3-40 (62)
9 2izy_A CAMP-dependent protein 8.5 5E+02 0.017 17.5 4.3 43 44-106 7-49 (54)
10 2hw2_A Rifampin ADP-ribosyl tr 7.7 2.3E+02 0.008 23.4 2.6 25 26-58 109-133 (143)
No 1
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=59.37 E-value=3.5 Score=24.63 Aligned_cols=19 Identities=21% Similarity=0.787 Sum_probs=15.8
Q ss_pred hhhhHHHHHhhhhHhhhhh
Q 025568 80 RLGRVYVASILYGYFLKSA 98 (250)
Q Consensus 80 ~Lg~lyAAsmM~GYFLr~~ 98 (250)
.+|++||+=|++-||=++-
T Consensus 1 ~VGKiYAallI~d~~r~~k 19 (23)
T 3dve_B 1 HMGKVYAALMIFDFYKQNK 19 (26)
T ss_dssp CCHHHHHHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHHHHHHHHh
Confidence 3799999999999996553
No 2
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=54.58 E-value=6.3 Score=23.52 Aligned_cols=19 Identities=26% Similarity=0.772 Sum_probs=16.2
Q ss_pred hhhhHHHHHhhhhHhhhhh
Q 025568 80 RLGRVYVASILYGYFLKSA 98 (250)
Q Consensus 80 ~Lg~lyAAsmM~GYFLr~~ 98 (250)
.+|++||+=|++-||-+.-
T Consensus 2 ~VGKiYA~llI~d~~r~~k 20 (23)
T 3dvk_B 2 HMGKIYAAMMIMDYYKQSK 20 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHh
Confidence 4799999999999997653
No 3
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=41.72 E-value=14 Score=22.55 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=16.1
Q ss_pred hHHHHHhhhhHhhhhhhhHh
Q 025568 83 RVYVASILYGYFLKSASLRY 102 (250)
Q Consensus 83 ~lyAAsmM~GYFLr~~eqR~ 102 (250)
++|||=|++-||=++=..|-
T Consensus 1 KvYAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 1 KIYAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred ChhHHHHHHHHHHHHHhhhh
Confidence 48999999999977666554
No 4
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=36.30 E-value=11 Score=28.60 Aligned_cols=20 Identities=25% Similarity=0.645 Sum_probs=15.4
Q ss_pred chhhhhhHHHHHhhhhHhhh
Q 025568 77 QRLRLGRVYVASILYGYFLK 96 (250)
Q Consensus 77 sr~~Lg~lyAAsmM~GYFLr 96 (250)
+.+++|++||+=|++-||=+
T Consensus 56 ~~lTVGKiYA~llI~d~~r~ 75 (81)
T 3g43_E 56 DEVTVGKFYATFLIQEYFRK 75 (81)
T ss_dssp ---CCCCHHHHHHHHHHHHH
T ss_pred CcEeehHHHHHHHHHHHHHH
Confidence 67889999999999999844
No 5
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=27.36 E-value=15 Score=25.43 Aligned_cols=21 Identities=52% Similarity=0.599 Sum_probs=13.3
Q ss_pred HhhhhHhhhhhhhHhHHHHHH
Q 025568 88 SILYGYFLKSASLRYYLEECL 108 (250)
Q Consensus 88 smM~GYFLr~~eqR~~LE~sl 108 (250)
|++||||+-.--.--.+|.-|
T Consensus 4 S~L~G~F~D~W~~GT~~~~~m 24 (51)
T 2xf7_A 4 SLLYGYFLDSWLDGTASEELL 24 (51)
T ss_dssp CTTHHHHHHHHHHTCCCHHHH
T ss_pred hHHHHHHHHHHhcchhhHHHH
Confidence 689999997654443344433
No 6
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}
Probab=16.06 E-value=38 Score=20.80 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=14.8
Q ss_pred EEechhhhHHHHHHHHhhh-hhhhhhh
Q 025568 213 ILTSFSSLKRLVLEAIAFG-SFLWDAE 238 (250)
Q Consensus 213 i~isfs~LkrLVLEAvaFG-SFLwDvE 238 (250)
..+.|+|||= ||||+ +|+||.|
T Consensus 5 ~i~~~~GLRG----AvafaL~~~l~~~ 27 (28)
T 2kbv_A 5 FIIAYGGLRG----AIAFSLGYLLDKK 27 (28)
T ss_dssp HHTTTTSSCH----HHHHHHHHHHHHC
T ss_pred eEEEeecchH----HHHHHHHHhccCC
Confidence 3478899997 67776 4555544
No 7
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*
Probab=14.19 E-value=1.4e+02 Score=20.70 Aligned_cols=25 Identities=4% Similarity=0.264 Sum_probs=19.6
Q ss_pred hcccCcHHHHHHHHHHHHHhhcccc
Q 025568 39 LESIHEFEVLEMIREHISTVIGLRA 63 (250)
Q Consensus 39 Le~~hS~Ev~emI~~hl~~vLG~~~ 63 (250)
+......++.+.|++.+..+||..+
T Consensus 14 ~~~~~~~~~~~~l~~~~~~~l~~~~ 38 (99)
T 2liu_A 14 VNQVNLSEIKQVLKQQLAEALYTEE 38 (99)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTSCG
T ss_pred cCcCCHHHHHHHHHHHHHHHHCcCH
Confidence 3445667889999999999998754
No 8
>2qfa_B Borealin; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=9.50 E-value=1.7e+02 Score=20.92 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=28.0
Q ss_pred ccchhhhhhhcCCHHHHHHHhhhhhHHHHHHHHHhhhhhc
Q 025568 160 KQENLKCYVMGFDPETLQRCAKLRSREAVNLVEKHSCALF 199 (250)
Q Consensus 160 ~~~~Lr~YVm~fD~eTLqr~A~irSkEav~liEkht~ALF 199 (250)
+..+|-+|+.-||.+--.++=++|+.- +.+=|....+|
T Consensus 3 r~~KLasFLkDFD~ev~~~~~~~~~~~--~~llk~i~~~y 40 (62)
T 2qfa_B 3 RRRKLASFLKDFDREVEIRIKQIESDR--QNLLKEVDNLY 40 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 457899999999999999999999765 33333444443
No 9
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=8.54 E-value=5e+02 Score=17.47 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHHHHhhccccCCCCCCCcceEEechhhhhhHHHHHhhhhHhhhhhhhHhHHHH
Q 025568 44 EFEVLEMIREHISTVIGLRANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEE 106 (250)
Q Consensus 44 S~Ev~emI~~hl~~vLG~~~~~~~~~~~~~~~isr~~Lg~lyAAsmM~GYFLr~~eqR~~LE~ 106 (250)
.+++.++++.-+..|+...|.| +|. ...-||=+....|-+||.
T Consensus 7 p~~l~~lL~~f~~evlr~qP~D------------------i~~--Faa~YF~~L~~~~~~~~~ 49 (54)
T 2izy_A 7 PPGLTELLQGYTVEVLRQQPPD------------------LVD--FAVEYFTRLREARRGLEH 49 (54)
T ss_dssp CTTHHHHHHHHHHHHHHHCCSC------------------HHH--HHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHCCCC------------------HHH--HHHHHHHHHHHhHHHHhh
Confidence 4788999999999999999975 232 233578888889999986
No 10
>2hw2_A Rifampin ADP-ribosyl transferase; protein-antibiotic complex, ADP-ribosylation; HET: RFP; 1.45A {Mycobacterium smegmatis}
Probab=7.69 E-value=2.3e+02 Score=23.40 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=20.2
Q ss_pred CCccccCCCcchhhcccCcHHHHHHHHHHHHHh
Q 025568 26 NGRLEIWPSKDWELESIHEFEVLEMIREHISTV 58 (250)
Q Consensus 26 ~grv~~wP~~~~~Le~~hS~Ev~emI~~hl~~v 58 (250)
.|-|..|. -||||.++-|+++|..+
T Consensus 109 vgEv~~W~--------~h~pE~lq~mr~~La~l 133 (143)
T 2hw2_A 109 VGELTDWV--------GHPPEQLAAMRQGLEEL 133 (143)
T ss_dssp EEEECCCC--------CCCHHHHHHHHHHHHHH
T ss_pred EEEecccC--------CCCHHHHHHHHHHHHHH
Confidence 35566665 59999999999999877
Done!