BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025569
MAVSLNSVVGFNATHVSRSSERAAAPRAVQFTSPSSITVSRRRHIKKRTWGFCRSVKDSN
RVATNTSDEVSVHSEGSVSDNQVSPVNASSLDAAEGTGQLQTSADGSGPQTSEATNGSVV
SSYQKQDTSSSTNQQSTSKRSPLTARERLRAARVLSRYTETKASKSDMSSKVLDALKESD
RGKRRSRLPEAPTNLFDDSKRGLPKPGLTFQFPGGMDLFVIAFSFVFISTVMFATTYLVW
KVGAIHFNEY

High Scoring Gene Products

Symbol, full name Information P value
AT3G56010 protein from Arabidopsis thaliana 4.6e-42

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025569
        (250 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2082088 - symbol:AT3G56010 "AT3G56010" species...   413  4.6e-42   2


>TAIR|locus:2082088 [details] [associations]
            symbol:AT3G56010 "AT3G56010" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0000023 "maltose metabolic process" evidence=RCA]
            [GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0019252
            "starch biosynthetic process" evidence=RCA] [GO:0019288
            "isopentenyl diphosphate biosynthetic process,
            mevalonate-independent pathway" evidence=RCA] [GO:0019760
            "glucosinolate metabolic process" evidence=RCA] [GO:0043085
            "positive regulation of catalytic activity" evidence=RCA]
            EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AL163832 GO:GO:0009535
            EMBL:AY056267 EMBL:AY091408 IPI:IPI00529396 PIR:T49213
            RefSeq:NP_191160.1 UniGene:At.25441 STRING:Q9LY44 PaxDb:Q9LY44
            PRIDE:Q9LY44 EnsemblPlants:AT3G56010.1 GeneID:824767
            KEGG:ath:AT3G56010 TAIR:At3g56010 eggNOG:NOG282327
            HOGENOM:HOG000006205 InParanoid:Q9LY44 OMA:DILIIAF PhylomeDB:Q9LY44
            ProtClustDB:CLSN2684147 ArrayExpress:Q9LY44 Genevestigator:Q9LY44
            Uniprot:Q9LY44
        Length = 201

 Score = 413 (150.4 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
 Identities = 82/111 (73%), Positives = 93/111 (83%)

Query:   142 PLTARERLRAARVLSRYTET--KASKSDMSSKVLDALKESDR-GKRRSRLPEAPTNLFDD 198
             PLTARERLRAARVLSRYTE   K SK  M S++LD LKESD+  KR+  LPEAPTN+ DD
Sbjct:    91 PLTARERLRAARVLSRYTEATPKPSKPKMGSQLLDVLKESDKKSKRKPGLPEAPTNMLDD 150

Query:   199 SKRGLPKPGLTFQFPGGMDLFVIAFSFVFISTVMFATTYLVWKVGAIHFNE 249
             S+RG+PK GLTF  PGG D+ +IAFSFVFISTVMFATT+LVWK+GAIHFNE
Sbjct:   151 SRRGMPKSGLTFDLPGGSDILIIAFSFVFISTVMFATTFLVWKLGAIHFNE 201

 Score = 49 (22.3 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
 Identities = 23/70 (32%), Positives = 33/70 (47%)

Query:    31 FTSPSSITVSRRRHI-KKRTWGFCRSVKDSNRVATNTSDEVSVHSEGSVSDNQVSPVNAS 89
             F S  S+  SRR  + K+R    C    D N V T      SV S  S   N+  PV+  
Sbjct:    28 FASYISLNSSRRSLLCKRRLVVSCLDTND-NSVTTT-----SVDSSSSSDSNK--PVS-E 78

Query:    90 SLDAAEGTGQ 99
             S++++ GT +
Sbjct:    79 SVESSNGTAK 88


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.127   0.356    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      250       220   0.00094  112 3  11 23  0.41    33
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  152 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.60u 0.16s 20.76t   Elapsed:  00:00:01
  Total cpu time:  20.60u 0.16s 20.76t   Elapsed:  00:00:01
  Start:  Fri May 10 15:34:16 2013   End:  Fri May 10 15:34:17 2013

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