Query 025569
Match_columns 250
No_of_seqs 16 out of 18
Neff 1.8
Searched_HMMs 46136
Date Fri Mar 29 07:10:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025569.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025569hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08320 PIG-X: PIG-X / PBN1; 53.2 3.2 7E-05 34.9 -0.9 38 205-242 167-204 (207)
2 cd01175 IPT_COE IPT domain of 47.7 7.7 0.00017 30.9 0.5 35 203-241 7-41 (85)
3 smart00780 PIG-X PIG-X / PBN1. 43.3 8.4 0.00018 33.2 0.2 38 207-244 165-202 (203)
4 cd08545 YcnI_like Reeler-like 39.2 22 0.00049 30.0 2.1 57 185-250 37-98 (152)
5 COG5639 Uncharacterized conser 34.9 16 0.00036 28.8 0.6 41 153-193 27-77 (77)
6 PF14202 TnpW: Transposon-enco 34.0 29 0.00062 23.3 1.6 12 234-249 9-20 (37)
7 PLN00210 40S ribosomal protein 24.4 1.3E+02 0.0028 25.3 4.2 54 146-201 78-141 (141)
8 PRK00474 rps9p 30S ribosomal p 21.5 1.4E+02 0.003 24.9 3.8 47 146-201 78-134 (134)
9 KOG2223 Uncharacterized conser 21.3 59 0.0013 33.1 1.9 42 167-210 155-198 (586)
10 PF03908 Sec20: Sec20; InterP 21.3 11 0.00024 28.2 -2.4 22 217-241 69-90 (92)
11 PRK13702 replication protein; 21.1 1.2E+02 0.0026 24.3 3.2 19 139-157 20-38 (85)
No 1
>PF08320 PIG-X: PIG-X / PBN1; InterPro: IPR013233 Mammalian PIG-X and yeast PBN1 are essential components of glycosylphosphatidylinositol-mannosyltransferase I []. These enzymes are involved in the transfer of sugar molecules.; GO: 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane
Probab=53.16 E-value=3.2 Score=34.93 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=33.2
Q ss_pred CCCceeeecCCcceEEEeehhHHHHHhhhheeeEEEee
Q 025569 205 KPGLTFQFPGGMDLFVIAFSFVFISTVMFATTYLVWKV 242 (250)
Q Consensus 205 Keg~tF~fp~G~d~f~i~~SFv~IstvMfgTtyiVwK~ 242 (250)
....+++.|.|----+-.+.++++.++++|+.||+||+
T Consensus 167 ~~~~~v~VPvg~~~~~~~V~~~T~~~~~lg~~~i~~~l 204 (207)
T PF08320_consen 167 SSSLSVSVPVGDTSDYDFVEIGTLLVVLLGFIWILWKL 204 (207)
T ss_pred CccEEEEeeeCChhhcCEEhHHHHHHHHHHHHHHHHHH
Confidence 45678999999887788889999999999999999985
No 2
>cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown.
Probab=47.66 E-value=7.7 Score=30.91 Aligned_cols=35 Identities=34% Similarity=0.581 Sum_probs=28.7
Q ss_pred CCCCCceeeecCCcceEEEeehhHHHHHhhhheeeEEEe
Q 025569 203 LPKPGLTFQFPGGMDLFVIAFSFVFISTVMFATTYLVWK 241 (250)
Q Consensus 203 ~pKeg~tF~fp~G~d~f~i~~SFv~IstvMfgTtyiVwK 241 (250)
.|-|||+ .||..+.++---|-==.-+|||+++ ||-
T Consensus 7 ~P~eG~~---tGGt~VtI~GenF~~gl~V~FG~~~-~w~ 41 (85)
T cd01175 7 SPSEGWT---TGGATVIIIGDNFFDGLQVVFGTML-VWS 41 (85)
T ss_pred cCCCCcc---cCCeEEEEECCCCCCCcEEEECCEe-EEE
Confidence 5889997 6899988887677666779999997 885
No 3
>smart00780 PIG-X PIG-X / PBN1. Mammalian PIG-X and yeast PBN1 are essential components of glycosylphosphatidylinositol-mannosyltransferase I. These enzymes are involved in the transfer of sugar molecules.
Probab=43.33 E-value=8.4 Score=33.17 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=29.2
Q ss_pred CceeeecCCcceEEEeehhHHHHHhhhheeeEEEeece
Q 025569 207 GLTFQFPGGMDLFVIAFSFVFISTVMFATTYLVWKVGA 244 (250)
Q Consensus 207 g~tF~fp~G~d~f~i~~SFv~IstvMfgTtyiVwK~Ga 244 (250)
..+.+.|.|----+-.+..+.+..+.+|..||+||++.
T Consensus 165 ~~~v~VPvg~~~~~~~V~~~T~lv~~lg~~~il~~l~~ 202 (203)
T smart00780 165 SLEINVPVGDTNDFPVIELVTLLVVLIGFLYILYKLFR 202 (203)
T ss_pred ceEEEecccccccCCeEEEeHHHHHHHHHHhhhhhhcc
Confidence 37899999975545556666777777999999999863
No 4
>cd08545 YcnI_like Reeler-like domain of YcnI and similar proteins. YcnI is a copper-responsive gene of Bacillus subtilis. It is homologous to an uncharacterized protein from Nocardia farcinica, which shares a conserved three-dimensional structure with cohesins and the reeler domain. Some members in this YcnI_like family have C-terminal domains (DUF461) that may bind copper.
Probab=39.20 E-value=22 Score=29.96 Aligned_cols=57 Identities=30% Similarity=0.452 Sum_probs=30.8
Q ss_pred CCCCCCCCCCcccccCCCCCCCCceeeecCCcc-eEEEeehhHHHHHhhhheeeEEEeecee----eccCC
Q 025569 185 RSRLPEAPTNLFDDSKRGLPKPGLTFQFPGGMD-LFVIAFSFVFISTVMFATTYLVWKVGAI----HFNEY 250 (250)
Q Consensus 185 ~sglPeaP~NlfdDskRg~pKeg~tF~fp~G~d-~f~i~~SFv~IstvMfgTtyiVwK~GaI----HFNey 250 (250)
+--||+ + |.. -+=|||.||+.+.--+.- .=+=. ==.+|-=+.+-|+|..|.. ||+||
T Consensus 37 ~V~lP~---g-v~~-v~p~p~pGWt~~~~~~~~~~p~~~----hg~~vt~~v~~VtWt~~~~~~~~~f~eF 98 (152)
T cd08545 37 RVKLPE---G-VAS-VKPQPKPGWTVEVTKGKLAKPYTT----HGKTVTEGVTSVTWTAGDGGPDGQFDEF 98 (152)
T ss_pred EEEcCC---C-ccc-cceecCCCCEEEEEecccCCceec----CCceeccceEEEEEeCCCCCCCCceEEE
Confidence 345666 2 222 335999999999654431 00000 0011223457788998886 56554
No 5
>COG5639 Uncharacterized conserved small protein [Function unknown]
Probab=34.87 E-value=16 Score=28.77 Aligned_cols=41 Identities=29% Similarity=0.587 Sum_probs=30.3
Q ss_pred HhhhhcccC-------CCCCccccHHHHHHHhhhccc---ccCCCCCCCCC
Q 025569 153 RVLSRYTET-------KASKSDMSSKVLDALKESDRG---KRRSRLPEAPT 193 (250)
Q Consensus 153 RvL~ry~e~-------k~sk~e~gs~vLdAlresDk~---k~~sglPeaP~ 193 (250)
|.|.+|++- ...-.+++--.|+++-+.|+| -|+-++||-|+
T Consensus 27 ~~L~~Yaai~~~t~Ge~~~~a~Lia~MLe~Fla~DR~F~kark~~~p~~~s 77 (77)
T COG5639 27 RALDDYAAIYAQTYGESATPATLIAHMLEAFLAGDRGFAKARKKAAPPKPS 77 (77)
T ss_pred HHHHHHHHHHHHhhccccCHHHHHHHHHHHHHhccHHHHHHHHhcCCCCCC
Confidence 456666654 344567888899999999999 45688998774
No 6
>PF14202 TnpW: Transposon-encoded protein TnpW
Probab=34.03 E-value=29 Score=23.29 Aligned_cols=12 Identities=58% Similarity=1.060 Sum_probs=9.7
Q ss_pred heeeEEEeeceeeccC
Q 025569 234 ATTYLVWKVGAIHFNE 249 (250)
Q Consensus 234 gTtyiVwK~GaIHFNe 249 (250)
+|||+| -+||||
T Consensus 9 ~Tty~V----~~~F~~ 20 (37)
T PF14202_consen 9 KTTYVV----EVHFSE 20 (37)
T ss_pred CEEEEE----EEEECC
Confidence 688888 589986
No 7
>PLN00210 40S ribosomal protein S16; Provisional
Probab=24.45 E-value=1.3e+02 Score=25.32 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhhcccCCCCCccccHHHHHHHhhhccc----------ccCCCCCCCCCCcccccCC
Q 025569 146 RERLRAARVLSRYTETKASKSDMSSKVLDALKESDRG----------KRRSRLPEAPTNLFDDSKR 201 (250)
Q Consensus 146 RErLraARvL~ry~e~k~sk~e~gs~vLdAlresDk~----------k~~sglPeaP~NlfdDskR 201 (250)
-=|+--||+|-.|...- ..++.-..+-++|++-|+| +|++|++-| ---|--|||
T Consensus 78 Air~aiaraL~~~~~~~-~~~~~r~~Lk~~l~~yd~glLtrD~R~~ERKK~G~~kA-Rk~~Q~Skr 141 (141)
T PLN00210 78 AIRQSIAKALVAYYQKY-VDEQSKKEIKDILLRYDRTLLVADPRRCEPKKFGGRGA-RARFQKSYR 141 (141)
T ss_pred HHHHHHHHHHHHhcccc-cChhHHHHHHHHHHhccCCCccCCchhhccCcCCcccc-ccccccccC
Confidence 35788899999996531 1223334455667776766 788998877 333443433
No 8
>PRK00474 rps9p 30S ribosomal protein S9P; Reviewed
Probab=21.52 E-value=1.4e+02 Score=24.87 Aligned_cols=47 Identities=26% Similarity=0.192 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhhcccCCCCCccccHHHHHHHhhhccc----------ccCCCCCCCCCCcccccCC
Q 025569 146 RERLRAARVLSRYTETKASKSDMSSKVLDALKESDRG----------KRRSRLPEAPTNLFDDSKR 201 (250)
Q Consensus 146 RErLraARvL~ry~e~k~sk~e~gs~vLdAlresDk~----------k~~sglPeaP~NlfdDskR 201 (250)
-=|+--||+|-.|.. +|+ +-+.|++-|+| +|++|++-| ---|--|||
T Consensus 78 Air~aIaraL~~~~~----~~~----~r~~lk~~d~glLtrD~R~~ERKK~G~~kA-Rk~~Q~SkR 134 (134)
T PRK00474 78 AARTAIARGLVEWTG----DME----LKDAFLAYDRTLLVGDPRRTEPKKWGGKGA-RAKRQKSYR 134 (134)
T ss_pred HHHHHHHHHHHHhcc----CHH----HHHHHHHhcCCCcccCchhhccCcCCCccc-cccccccCC
Confidence 358889999999842 223 34555555544 789999887 333433443
No 9
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=21.30 E-value=59 Score=33.14 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=28.6
Q ss_pred cccHHHHHHHhhhccc--ccCCCCCCCCCCcccccCCCCCCCCcee
Q 025569 167 DMSSKVLDALKESDRG--KRRSRLPEAPTNLFDDSKRGLPKPGLTF 210 (250)
Q Consensus 167 e~gs~vLdAlresDk~--k~~sglPeaP~NlfdDskRg~pKeg~tF 210 (250)
++|..+-|-+.|+.+| -+++|-=--|-||||.. -..|+||+.
T Consensus 155 ~r~~~~~d~v~eae~g~~l~~s~~Fnfprnll~r~--k~~khgwkl 198 (586)
T KOG2223|consen 155 QRGNELSDFVQEAEKGETLFQSGTFNFPRNLLDRG--KASKHGWKL 198 (586)
T ss_pred hhccchhcccCCccccchhhhcCccCcchhhcCCC--chhhhhhhh
Confidence 3455555666666776 34555555899999866 467889974
No 10
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=21.29 E-value=11 Score=28.16 Aligned_cols=22 Identities=36% Similarity=0.931 Sum_probs=12.3
Q ss_pred ceEEEeehhHHHHHhhhheeeEEEe
Q 025569 217 DLFVIAFSFVFISTVMFATTYLVWK 241 (250)
Q Consensus 217 d~f~i~~SFv~IstvMfgTtyiVwK 241 (250)
|-++|.++|.|...+. -|||||
T Consensus 69 D~~li~~~~~~f~~~v---~yI~~r 90 (92)
T PF03908_consen 69 DRILIFFAFLFFLLVV---LYILWR 90 (92)
T ss_pred hHHHHHHHHHHHHHHH---HHHhhh
Confidence 5556666665544332 367775
No 11
>PRK13702 replication protein; Provisional
Probab=21.12 E-value=1.2e+02 Score=24.29 Aligned_cols=19 Identities=42% Similarity=0.555 Sum_probs=14.9
Q ss_pred CCCCchHHHHHHHHHhhhh
Q 025569 139 KRSPLTARERLRAARVLSR 157 (250)
Q Consensus 139 kr~pltARErLraARvL~r 157 (250)
|--||++.||-|++.+=.|
T Consensus 20 KG~Pls~aErQr~svaRKr 38 (85)
T PRK13702 20 KGNPLSAAEKQRASVARKR 38 (85)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 4479999999998866444
Done!