Query 025569
Match_columns 250
No_of_seqs 16 out of 18
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 12:59:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025569.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025569hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3esm_A Uncharacterized protein 35.9 19 0.00066 29.4 2.4 15 202-216 48-62 (152)
2 3u5c_Q RP61R, 40S ribosomal pr 28.7 50 0.0017 26.7 3.6 45 146-191 80-134 (143)
3 2l8s_A Integrin alpha-1; trans 25.1 2.9 9.8E-05 29.7 -3.7 31 214-244 5-35 (54)
4 3j20_K 30S ribosomal protein S 20.7 1.3E+02 0.0045 24.0 4.7 37 147-191 78-126 (135)
5 2xzm_I RPS16E; ribosome, trans 19.8 85 0.0029 25.5 3.4 44 147-191 83-136 (145)
6 2knc_A Integrin alpha-IIB; tra 19.4 4.2 0.00014 28.7 -3.8 28 217-244 11-38 (54)
7 3muj_A Transcription factor CO 17.7 17 0.00058 29.8 -1.2 35 203-241 12-46 (138)
8 3rwn_A Gene 9 protein; KNOB, c 16.5 30 0.001 29.2 0.0 45 163-207 2-54 (161)
9 1jrj_A Exendin-4; Trp-CAGE, GL 12.5 1.2E+02 0.0042 20.1 2.2 11 181-191 28-38 (39)
10 2kgr_A Intersectin-1; structur 11.5 1.8E+02 0.0061 20.5 3.0 37 170-206 68-105 (111)
No 1
>3esm_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.65A {Nocardia farcinica}
Probab=35.94 E-value=19 Score=29.42 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=12.4
Q ss_pred CCCCCCceeeecCCc
Q 025569 202 GLPKPGLTFQFPGGM 216 (250)
Q Consensus 202 g~pKeg~tF~fp~G~ 216 (250)
=|||.|||.+.--+.
T Consensus 48 ~~p~pGWt~~v~k~~ 62 (152)
T 3esm_A 48 TEPMPGWTARVDRND 62 (152)
T ss_dssp ECCCTTEEEEEEECT
T ss_pred eecCCCCEEEEEeCC
Confidence 489999999987654
No 2
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I*
Probab=28.72 E-value=50 Score=26.73 Aligned_cols=45 Identities=18% Similarity=0.151 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhhcccCCCCCccccHHHHHHHhhhccc----------ccCCCCCCC
Q 025569 146 RERLRAARVLSRYTETKASKSDMSSKVLDALKESDRG----------KRRSRLPEA 191 (250)
Q Consensus 146 RErLraARvL~ry~e~k~sk~e~gs~vLdAlresDk~----------k~~sglPea 191 (250)
-=|+--||+|-.|...- -.|+.-..+-++|++-|+| +|++|++-|
T Consensus 80 AiR~aIArAL~~~~~~~-vd~~~r~~LK~~l~~yD~glLtrD~R~~ErKK~G~~kA 134 (143)
T 3u5c_Q 80 AIRQAIAKGLVAYHQKY-VDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGKGA 134 (143)
T ss_dssp HHHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHCSSTTSCCCCCCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHhccCCCCcCCCcccccCCCCCccc
Confidence 35788899999884321 1234445677788887877 788888877
No 3
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=25.13 E-value=2.9 Score=29.73 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=19.6
Q ss_pred CCcceEEEeehhHHHHHhhhheeeEEEeece
Q 025569 214 GGMDLFVIAFSFVFISTVMFATTYLVWKVGA 244 (250)
Q Consensus 214 ~G~d~f~i~~SFv~IstvMfgTtyiVwK~Ga 244 (250)
.+.-+.+|++|.+.-.-+..-.+|+.||+|-
T Consensus 5 ~~vp~WiIi~svl~GLLLL~Lii~~LwK~GF 35 (54)
T 2l8s_A 5 GRVPLWVILLSAFAGLLLLMLLILALWKIGF 35 (54)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3344456666665544555556789999983
No 4
>3j20_K 30S ribosomal protein S9P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.73 E-value=1.3e+02 Score=24.00 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=26.7
Q ss_pred HHHHHHHhhhhcccCCCCCccccHHHHHHHhhhccc----------ccCCCC--CCC
Q 025569 147 ERLRAARVLSRYTETKASKSDMSSKVLDALKESDRG----------KRRSRL--PEA 191 (250)
Q Consensus 147 ErLraARvL~ry~e~k~sk~e~gs~vLdAlresDk~----------k~~sgl--Pea 191 (250)
=|+--||+|-.|.+ +| .+-++|++-|.| +|++|+ +-|
T Consensus 78 iR~aIarAL~~~~~----~~----~lr~~l~~~d~glLtrD~R~~ErKK~G~~~~kA 126 (135)
T 3j20_K 78 ARMAIARALVEWTG----DM----SLKEKFMKYDRTMLVGDPRRTEPHKPNRSTKGP 126 (135)
T ss_dssp HHHHHHHHHHHHHC----CH----HHHHHHHHHCSTTTCCCSCCCCCCCCCSSCSSS
T ss_pred HHHHHHHHHHHhcc----CH----HHHHHHHhccCCCccCCCccccccccCCCCCCC
Confidence 47788999999875 23 355667776666 788888 776
No 5
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I
Probab=19.80 E-value=85 Score=25.51 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=30.0
Q ss_pred HHHHHHHhhhhcccCCCCCccccHHHHHHHhhhccc----------ccCCCCCCC
Q 025569 147 ERLRAARVLSRYTETKASKSDMSSKVLDALKESDRG----------KRRSRLPEA 191 (250)
Q Consensus 147 ErLraARvL~ry~e~k~sk~e~gs~vLdAlresDk~----------k~~sglPea 191 (250)
-|+--||+|-.|... --.++.-..+-++|.+-|+| +|++|++-|
T Consensus 83 iR~aIArAL~~~~~k-~~d~~~r~~Lk~~l~~ydrglLtrD~R~~ErKK~G~~kA 136 (145)
T 2xzm_I 83 IRQALSKGIVAYHAK-YVDENSKREIKEQLMQYDRSLLVADPRRMEPKKCGGRGA 136 (145)
T ss_dssp HHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHCSTTTSCBCCCCCCCCTTSSSS
T ss_pred HHHHHHHHHHHHhhh-cCCHHHHHHHHHHHhhcCCCcCcCCCcccccCcCCCccc
Confidence 477789999988421 00234445666777777877 788898877
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=19.43 E-value=4.2 Score=28.70 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=18.5
Q ss_pred ceEEEeehhHHHHHhhhheeeEEEeece
Q 025569 217 DLFVIAFSFVFISTVMFATTYLVWKVGA 244 (250)
Q Consensus 217 d~f~i~~SFv~IstvMfgTtyiVwK~Ga 244 (250)
-+.+|++|.+.-.-+....+|+.||+|-
T Consensus 11 p~wiIi~svl~GLllL~li~~~LwK~GF 38 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAMWKVGF 38 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3445666665555555567889999984
No 7
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=17.70 E-value=17 Score=29.84 Aligned_cols=35 Identities=34% Similarity=0.581 Sum_probs=29.2
Q ss_pred CCCCCceeeecCCcceEEEeehhHHHHHhhhheeeEEEe
Q 025569 203 LPKPGLTFQFPGGMDLFVIAFSFVFISTVMFATTYLVWK 241 (250)
Q Consensus 203 ~pKeg~tF~fp~G~d~f~i~~SFv~IstvMfgTtyiVwK 241 (250)
.|-|||+ -||..+.++--.|.=-.-|+||++. +|-
T Consensus 12 ~P~eG~~---~GG~~V~I~G~nF~~GlqV~FG~t~-~w~ 46 (138)
T 3muj_A 12 SPSEGWT---TGGATVIIIGDNFFDGLQVVFGTML-VWS 46 (138)
T ss_dssp ESSEEET---TCCCEEEEEEESCCTTCEEEETTEE-ECE
T ss_pred cCCCCCc---cCCeEEEEeCCCcccCCEEEECCee-eee
Confidence 4778885 7999999999999888889999987 663
No 8
>3rwn_A Gene 9 protein; KNOB, cell membrane penetration, bacteriophage SF6, viral PR; HET: GLU; 1.00A {Shigella phage SF6} PDB: 3jr0_A*
Probab=16.54 E-value=30 Score=29.18 Aligned_cols=45 Identities=33% Similarity=0.448 Sum_probs=31.2
Q ss_pred CCCccccHHHHHHHhhhcccccC----CC----CCCCCCCcccccCCCCCCCC
Q 025569 163 ASKSDMSSKVLDALKESDRGKRR----SR----LPEAPTNLFDDSKRGLPKPG 207 (250)
Q Consensus 163 ~sk~e~gs~vLdAlresDk~k~~----sg----lPeaP~NlfdDskRg~pKeg 207 (250)
|.-||+|+.=||+|+..--.||. +| +|++|.||.+--|--.|--|
T Consensus 2 ~~~~~~~~s~~d~~~~~t~R~KsEv~~tGls~~i~~~~~nli~~lK~~~P~~g 54 (161)
T 3rwn_A 2 PKVPEFGSSRIDALEYATTRKKSEVVYSGVSVTIPTAPTNLVSLLKTLTPSSG 54 (161)
T ss_dssp -----CCHHHHHHHHHHTSCCEEEEEEEEEEEEECSSCEEHHHHHTTSCCSBS
T ss_pred CCCcccCccchhhhhhcceeeeeEEEEeeeEEEcCCCchhHHHHhhccCCCCc
Confidence 34689999999999865433322 34 59999999999888888777
No 9
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=12.48 E-value=1.2e+02 Score=20.13 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=7.0
Q ss_pred ccccCCCCCCC
Q 025569 181 RGKRRSRLPEA 191 (250)
Q Consensus 181 k~k~~sglPea 191 (250)
.||+|.|-||+
T Consensus 28 ~~k~r~~~pp~ 38 (39)
T 1jrj_A 28 NGGPSSGAPPP 38 (39)
T ss_dssp TTGGGSSSCCC
T ss_pred cCCCCCCCCCC
Confidence 35667777764
No 10
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=11.51 E-value=1.8e+02 Score=20.48 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcccccCCCCCCC-CCCcccccCCCCCCC
Q 025569 170 SKVLDALKESDRGKRRSRLPEA-PTNLFDDSKRGLPKP 206 (250)
Q Consensus 170 s~vLdAlresDk~k~~sglPea-P~NlfdDskRg~pKe 206 (250)
...+.++..-...++...||.. |..|+-.++|+.+-|
T Consensus 68 ~EF~~~~~~~~~~~~G~~lp~~lp~~l~pps~~~~~~~ 105 (111)
T 2kgr_A 68 EEFILAMHLIDVAMSGQPLPPVLPPEYIPPSFRRVRLE 105 (111)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSSCCGGGSCTTTTCCCCC
T ss_pred HHHHHHHHHHHHHHCCCCCccccCcccCCCccCCCccc
Done!