BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025570
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 84/157 (53%), Gaps = 24/157 (15%)
Query: 4 LPPGYRFFPTEEELVSFYLINKLE------ELCGE-------------KCQGDTEQWFFF 44
LPPG+RF+PT+EEL+ YL K +L E K ++W+FF
Sbjct: 17 LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFF 76
Query: 45 TPRQXXXXXXXXPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKW 104
+PR P+R SGYWKATG+ + S++ + +G+KK +VFY GKAP G KT W
Sbjct: 77 SPRDRKYPNGSRPNRVAGSGYWKATGTDKII-STEGQRVGIKKALVFYIGKAPKGTKTNW 135
Query: 105 KMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSES 141
MHEYR IE + S + ++ LCRIY K S
Sbjct: 136 IMHEYRLIEPSRRNGSTKL----DDWVLCRIYKKQSS 168
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 84/157 (53%), Gaps = 24/157 (15%)
Query: 4 LPPGYRFFPTEEELVSFYLINKLE------ELCGE-------------KCQGDTEQWFFF 44
LPPG+RF+PT+EEL+ YL K +L E K ++W+FF
Sbjct: 20 LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFF 79
Query: 45 TPRQXXXXXXXXPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKW 104
+PR P+R SGYWKATG+ + S++ + +G+KK +VFY GKAP G KT W
Sbjct: 80 SPRDRKYPNGSRPNRVAGSGYWKATGTDKII-STEGQRVGIKKALVFYIGKAPKGTKTNW 138
Query: 105 KMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSES 141
MHEYR IE + S + ++ LCRIY K S
Sbjct: 139 IMHEYRLIEPSRRNGSTKL----DDWVLCRIYKKQSS 171
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 80/156 (51%), Gaps = 21/156 (13%)
Query: 4 LPPGYRFFPTEEELVSFYLINK----------LEEL---------CGEKCQGDTEQWFFF 44
LPPG+RF PT++ELV YL K + E+ E+ +W+FF
Sbjct: 15 LPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFF 74
Query: 45 TPRQXXXXXXXXPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKW 104
TPR P+R +GYWKATG+ V + R +G+KK +VFY GKAP G KT W
Sbjct: 75 TPRDRKYPNGSRPNRAAGNGYWKATGADKPV-APRGRTLGIKKALVFYAGKAPRGVKTDW 133
Query: 105 KMHEYRAIEGASNPSSAVIPKLR-HEFSLCRIYVKS 139
MHEYR + + A LR ++ LCR+Y K
Sbjct: 134 IMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169
>pdb|2BCO|A Chain A, X-Ray Structure Of Succinylglutamate Desuccinalase From
Vibrio Parahaemolyticus (Rimd 2210633) At The Resolution
2.3 A, Northeast Structural Genomics Target Vpr14
pdb|2BCO|B Chain B, X-Ray Structure Of Succinylglutamate Desuccinalase From
Vibrio Parahaemolyticus (Rimd 2210633) At The Resolution
2.3 A, Northeast Structural Genomics Target Vpr14
Length = 350
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 91 FYKGKAPTGRKTKWKMHEYRAIEGASNPSSAVIPKLRH 128
FY+ P KT+W + + AI G+ + + AV PK RH
Sbjct: 140 FYQDTEP---KTRWHLDLHCAIRGSKHYTFAVSPKTRH 174
>pdb|2G9D|A Chain A, Crystal Structure Of Succinylglutamate Desuccinylase From
Vibrio Cholerae, Northeast Structural Genomics Target
Vcr20
Length = 350
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 96 APTGRKTKWKMHEYRAIEGASNPSSAVIPKLRH 128
A T ++W + + AI G+ + S AV PK RH
Sbjct: 142 ANTDEHSRWHLDLHCAIRGSKHYSFAVSPKARH 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,319,747
Number of Sequences: 62578
Number of extensions: 340054
Number of successful extensions: 476
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 465
Number of HSP's gapped (non-prelim): 7
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)