Query 025570
Match_columns 250
No_of_seqs 174 out of 950
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 13:00:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025570.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025570hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 4.7E-49 1.6E-53 335.2 12.7 137 3-141 14-171 (174)
2 1ut7_A No apical meristem prot 100.0 2E-48 6.8E-53 330.6 13.1 135 2-142 15-169 (171)
3 2gqp_A Endoplasmin; GRP94, HSP 30.8 9.5 0.00033 32.7 -0.2 12 237-248 225-236 (236)
4 1wpi_A YKR049C, hypothetical 1 20.4 32 0.0011 27.4 1.0 18 225-246 97-115 (133)
5 3dz1_A Dihydrodipicolinate syn 18.4 44 0.0015 29.5 1.6 16 4-21 109-124 (313)
6 1f6k_A N-acetylneuraminate lya 18.3 42 0.0014 29.3 1.5 17 4-21 106-122 (293)
7 1ldd_A APC2WHB, anaphase promo 18.3 61 0.0021 23.1 2.0 22 5-27 37-59 (74)
8 2ehh_A DHDPS, dihydrodipicolin 18.1 43 0.0015 29.2 1.5 17 4-21 102-118 (294)
9 2ojp_A DHDPS, dihydrodipicolin 17.9 44 0.0015 29.2 1.5 17 4-21 103-119 (292)
10 3cpr_A Dihydrodipicolinate syn 17.8 44 0.0015 29.4 1.5 17 4-21 118-134 (304)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=4.7e-49 Score=335.18 Aligned_cols=137 Identities=43% Similarity=0.856 Sum_probs=109.5
Q ss_pred CCCCCcEEcCCHHHHHHHHHHHhhh--------------------hhhccccCCCCceEEEEccccccccCCCCCccccc
Q 025570 3 ELPPGYRFFPTEEELVSFYLINKLE--------------------ELCGEKCQGDTEQWFFFTPRQEREERGGRPSRTTA 62 (250)
Q Consensus 3 ~LPpGfRF~PTDeELV~~YL~~Ki~--------------------~lp~~~~~g~~e~WYFFs~r~~k~~~G~R~~R~t~ 62 (250)
.|||||||+|||||||.|||++||. +||+....++. +|||||++++++++|.|++|+|+
T Consensus 14 ~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~-ewYFFs~r~~ky~~g~R~nR~t~ 92 (174)
T 3ulx_A 14 NLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAR-EWYFFTPRDRKYPNGSRPNRAAG 92 (174)
T ss_dssp TCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSS-EEEEEEECCC-----CCSCEEET
T ss_pred CCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCc-eEEEEeccccccCCCCCceeecC
Confidence 6999999999999999999999998 45555555654 59999999999999999999999
Q ss_pred CceeEecCCCeeEEcCCCeEEEEEEEEeeecCcCCCCCCcCeEEEEEEeCCCCCCCC-CCCCCCCCCceEEEEEEEecCC
Q 025570 63 SGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMHEYRAIEGASNPS-SAVIPKLRHEFSLCRIYVKSES 141 (250)
Q Consensus 63 ~G~Wk~tG~~k~V~~~~g~~IG~KktlvFy~g~~p~g~kT~WvMhEYrl~~~~~~~~-~~~~p~~~~e~VLCRIy~K~~~ 141 (250)
+||||++|++++|.+ +|.+||+||+|+||.|++|++.||+|+||||+|.+...... +.......++|||||||+|++.
T Consensus 93 ~G~WkatG~dk~I~~-~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~~~ 171 (174)
T 3ulx_A 93 NGYWKATGADKPVAP-RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNE 171 (174)
T ss_dssp TEEEEECSCCEEECC-SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESCC-
T ss_pred CceEccCCCCcEEee-CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcCCC
Confidence 999999999999987 47999999999999999999999999999999987543211 1111123478999999998753
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=2e-48 Score=330.60 Aligned_cols=135 Identities=45% Similarity=0.880 Sum_probs=106.0
Q ss_pred CCCCCCcEEcCCHHHHHHHHHHHhhh--------------------hhhccccCCCCceEEEEccccccccCCCCCcccc
Q 025570 2 EELPPGYRFFPTEEELVSFYLINKLE--------------------ELCGEKCQGDTEQWFFFTPRQEREERGGRPSRTT 61 (250)
Q Consensus 2 ~~LPpGfRF~PTDeELV~~YL~~Ki~--------------------~lp~~~~~g~~e~WYFFs~r~~k~~~G~R~~R~t 61 (250)
..|||||||+|||||||.|||++||. +||+....++. +||||+++++++++|.|++|+|
T Consensus 15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~-ewyFFs~r~~k~~~g~R~~R~t 93 (171)
T 1ut7_A 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEK-EWYFFSPRDRKYPNGSRPNRVA 93 (171)
T ss_dssp SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSS-EEEEEEECCC-------CCEEE
T ss_pred cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCc-cEEEEeccccccCCCCcccccC
Confidence 36999999999999999999999998 45555545555 5999999999999999999999
Q ss_pred cCceeEecCCCeeEEcCCCeEEEEEEEEeeecCcCCCCCCcCeEEEEEEeCCCCCCCCCCCCCCCCCceEEEEEEEecCC
Q 025570 62 ASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSES 141 (250)
Q Consensus 62 ~~G~Wk~tG~~k~V~~~~g~~IG~KktlvFy~g~~p~g~kT~WvMhEYrl~~~~~~~~~~~~p~~~~e~VLCRIy~K~~~ 141 (250)
++||||++|++++|++ ++.+||+||+|+||++++|++.||+|+||||+|..... .......++|||||||+|+.+
T Consensus 94 ~~G~Wk~tG~~k~I~~-~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~----~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 94 GSGYWKATGTDKIIST-EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR----RNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp TTEEEEEEEEEEEEEE-TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC------------CCEEEEEEEECC--
T ss_pred CCCEEeccCCCceEEe-cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcc----ccCcccCCCEEEEEEEEcCCC
Confidence 9999999999999997 56999999999999999999999999999999987431 111234579999999999865
Q ss_pred c
Q 025570 142 F 142 (250)
Q Consensus 142 ~ 142 (250)
.
T Consensus 169 ~ 169 (171)
T 1ut7_A 169 A 169 (171)
T ss_dssp -
T ss_pred C
Confidence 3
No 3
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=30.79 E-value=9.5 Score=32.70 Aligned_cols=12 Identities=42% Similarity=1.121 Sum_probs=7.6
Q ss_pred CCCCCCccccCC
Q 025570 237 PQPPLWDWEQLN 248 (250)
Q Consensus 237 ~~~~~~~~~~~~ 248 (250)
-..++|+|||||
T Consensus 225 ~~~~~~~~~~~~ 236 (236)
T 2gqp_A 225 GGKTVWDWELMN 236 (236)
T ss_dssp ----CEEEEECC
T ss_pred cceeeeehhhcC
Confidence 456899999997
No 4
>1wpi_A YKR049C, hypothetical 15.6 kDa protein in NAP1-TRK2 intergenic region; structural genomics, OCSP, NESG, protein structure initiative; NMR {Saccharomyces cerevisiae} SCOP: c.47.1.18
Probab=20.39 E-value=32 Score=27.42 Aligned_cols=18 Identities=44% Similarity=1.130 Sum_probs=12.5
Q ss_pred CccCCCCccCCCCCCCCC-cccc
Q 025570 225 TNLDNNWNIVADPQPPLW-DWEQ 246 (250)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~-~~~~ 246 (250)
.-+..+|| ++.|+| ||||
T Consensus 97 ~~~~g~wn----~~~pL~VDWek 115 (133)
T 1wpi_A 97 CVQRGLWN----PKEALWVDWEN 115 (133)
T ss_dssp HHTTSSCC----CCCCEEEESSS
T ss_pred hhccCCcc----CCCCeEEEccc
Confidence 34455785 777898 7985
No 5
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=18.44 E-value=44 Score=29.52 Aligned_cols=16 Identities=25% Similarity=0.744 Sum_probs=13.1
Q ss_pred CCCCcEEcCCHHHHHHHH
Q 025570 4 LPPGYRFFPTEEELVSFY 21 (250)
Q Consensus 4 LPpGfRF~PTDeELV~~Y 21 (250)
+||- |.||+++|+.||
T Consensus 109 ~~P~--~~~s~~~l~~~f 124 (313)
T 3dz1_A 109 APPP--SLRTDEQITTYF 124 (313)
T ss_dssp CCCT--TCCSHHHHHHHH
T ss_pred CCCC--CCCCHHHHHHHH
Confidence 5674 569999999997
No 6
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=18.32 E-value=42 Score=29.29 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=13.8
Q ss_pred CCCCcEEcCCHHHHHHHH
Q 025570 4 LPPGYRFFPTEEELVSFY 21 (250)
Q Consensus 4 LPpGfRF~PTDeELV~~Y 21 (250)
+||-| |.||+++|+.||
T Consensus 106 ~~P~y-~~~~~~~l~~~f 122 (293)
T 1f6k_A 106 VTPFY-YKFSFPEIKHYY 122 (293)
T ss_dssp ECCCS-SCCCHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHH
Confidence 45644 889999999997
No 7
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=18.31 E-value=61 Score=23.09 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.0
Q ss_pred CCCcEEcC-CHHHHHHHHHHHhhh
Q 025570 5 PPGYRFFP-TEEELVSFYLINKLE 27 (250)
Q Consensus 5 PpGfRF~P-TDeELV~~YL~~Ki~ 27 (250)
|.|+.|.. |++||-. ||-.|+.
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~ 59 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLAD 59 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHH
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHh
Confidence 67899999 8899888 6999987
No 8
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=18.07 E-value=43 Score=29.25 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=13.8
Q ss_pred CCCCcEEcCCHHHHHHHH
Q 025570 4 LPPGYRFFPTEEELVSFY 21 (250)
Q Consensus 4 LPpGfRF~PTDeELV~~Y 21 (250)
+||- .|.||+++|+.||
T Consensus 102 ~~P~-y~~~s~~~l~~~f 118 (294)
T 2ehh_A 102 VVPY-YNKPTQRGLYEHF 118 (294)
T ss_dssp ECCC-SSCCCHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHH
Confidence 3564 4889999999998
No 9
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=17.94 E-value=44 Score=29.18 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=13.8
Q ss_pred CCCCcEEcCCHHHHHHHH
Q 025570 4 LPPGYRFFPTEEELVSFY 21 (250)
Q Consensus 4 LPpGfRF~PTDeELV~~Y 21 (250)
+||- .|.||+++|+.||
T Consensus 103 ~~P~-y~~~s~~~l~~~f 119 (292)
T 2ojp_A 103 VTPY-YNRPSQEGLYQHF 119 (292)
T ss_dssp ECCC-SSCCCHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHH
Confidence 3564 4889999999998
No 10
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=17.84 E-value=44 Score=29.43 Aligned_cols=17 Identities=29% Similarity=0.684 Sum_probs=14.0
Q ss_pred CCCCcEEcCCHHHHHHHH
Q 025570 4 LPPGYRFFPTEEELVSFY 21 (250)
Q Consensus 4 LPpGfRF~PTDeELV~~Y 21 (250)
+|| |.|.||+++|+.||
T Consensus 118 ~~P-~y~~~~~~~l~~~f 134 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHF 134 (304)
T ss_dssp ECC-CSSCCCHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHH
Confidence 466 44889999999998
Done!