Query 025572
Match_columns 250
No_of_seqs 39 out of 41
Neff 2.3
Searched_HMMs 46136
Date Fri Mar 29 07:12:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025572.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025572hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03165 chaperone protein dna 95.3 0.0025 5.4E-08 51.8 -1.7 46 203-248 11-58 (111)
2 PLN03165 chaperone protein dna 73.2 1.2 2.7E-05 36.3 0.3 21 228-248 72-92 (111)
3 PF14257 DUF4349: Domain of un 71.2 7.5 0.00016 33.9 4.7 35 138-173 213-247 (262)
4 PRK11720 galactose-1-phosphate 71.0 7.2 0.00016 36.5 4.7 80 18-101 52-141 (346)
5 PLN02643 ADP-glucose phosphory 63.0 17 0.00038 33.8 5.6 80 18-97 43-139 (336)
6 KOG3088 Secretory carrier memb 62.8 41 0.0009 32.4 8.0 35 124-158 96-141 (313)
7 cd00608 GalT Galactose-1-phosp 62.0 18 0.00038 33.2 5.3 31 67-97 95-125 (329)
8 PF00684 DnaJ_CXXCXGXG: DnaJ c 60.4 3.1 6.7E-05 29.9 0.2 19 226-244 36-54 (66)
9 TIGR00209 galT_1 galactose-1-p 50.0 31 0.00066 32.5 4.9 39 64-102 102-142 (347)
10 KOG2090 Metalloendopeptidase f 49.4 19 0.00042 37.6 3.8 33 69-105 299-331 (704)
11 TIGR02642 phage_xxxx uncharact 48.5 15 0.00032 32.5 2.4 18 231-248 99-121 (186)
12 PRK14293 chaperone protein Dna 42.5 9.8 0.00021 35.5 0.5 17 232-248 187-206 (374)
13 PRK00295 hypothetical protein; 42.5 1.1E+02 0.0023 22.8 5.9 52 79-132 16-67 (68)
14 PRK14283 chaperone protein Dna 40.3 11 0.00024 35.2 0.4 18 231-248 189-209 (378)
15 PF00831 Ribosomal_L29: Riboso 38.5 41 0.0009 24.0 3.1 33 76-115 1-33 (58)
16 PRK14297 chaperone protein Dna 38.0 12 0.00026 34.9 0.4 19 230-248 190-211 (380)
17 TIGR01010 BexC_CtrB_KpsE polys 37.7 1.3E+02 0.0027 27.5 6.7 15 154-168 336-350 (362)
18 PTZ00037 DnaJ_C chaperone prot 37.6 12 0.00026 36.0 0.3 21 228-248 189-214 (421)
19 KOG2813 Predicted molecular ch 37.4 14 0.00031 36.2 0.8 19 230-248 233-251 (406)
20 TIGR00757 RNaseEG ribonuclease 37.2 7.1 0.00015 37.6 -1.3 63 178-245 327-404 (414)
21 KOG2813 Predicted molecular ch 37.1 12 0.00026 36.7 0.2 22 227-248 241-262 (406)
22 PF08792 A2L_zn_ribbon: A2L zi 34.5 21 0.00046 23.5 1.0 11 231-241 3-13 (33)
23 PRK14301 chaperone protein Dna 33.7 16 0.00035 34.2 0.4 20 229-248 181-203 (373)
24 KOG2958 Galactose-1-phosphate 33.6 91 0.002 30.5 5.4 87 11-97 47-140 (354)
25 PRK14290 chaperone protein Dna 33.4 14 0.00031 34.3 0.0 23 226-248 186-211 (365)
26 cd02432 Nodulin-21_like_1 Nodu 31.0 30 0.00065 30.6 1.6 36 136-172 152-188 (218)
27 PF12794 MscS_TM: Mechanosensi 30.8 2E+02 0.0044 26.7 7.0 35 141-175 293-330 (340)
28 TIGR02349 DnaJ_bact chaperone 30.6 20 0.00043 32.9 0.5 18 231-248 186-206 (354)
29 KOG4122 Mitochondrial/chloropl 30.0 25 0.00054 24.7 0.8 22 226-247 3-29 (38)
30 TIGR02642 phage_xxxx uncharact 29.3 25 0.00054 31.0 0.9 13 232-244 116-128 (186)
31 PRK14300 chaperone protein Dna 29.1 22 0.00047 33.3 0.5 18 231-248 184-204 (372)
32 COG1656 Uncharacterized conser 29.0 11 0.00024 33.1 -1.4 14 187-200 70-83 (165)
33 PRK14286 chaperone protein Dna 28.1 23 0.0005 33.2 0.4 19 230-248 188-209 (372)
34 PRK11712 ribonuclease G; Provi 27.9 12 0.00025 37.1 -1.6 62 178-244 339-415 (489)
35 PHA02683 ORF078 thioredoxin-li 27.6 57 0.0012 25.8 2.5 40 69-108 28-73 (75)
36 PRK14287 chaperone protein Dna 27.5 23 0.0005 33.1 0.4 18 231-248 181-201 (371)
37 PF07526 POX: Associated with 27.2 1.4E+02 0.0029 25.2 4.8 21 81-105 69-89 (140)
38 PRK14294 chaperone protein Dna 26.8 26 0.00056 32.6 0.6 19 230-248 182-203 (366)
39 PF12301 CD99L2: CD99 antigen 26.1 22 0.00048 31.0 -0.0 29 200-235 117-145 (169)
40 PF13442 Cytochrome_CBB3: Cyto 25.7 17 0.00036 25.0 -0.7 11 231-241 11-21 (67)
41 PRK14282 chaperone protein Dna 25.4 28 0.00061 32.4 0.5 18 231-248 195-215 (369)
42 TIGR03147 cyt_nit_nrfF cytochr 25.0 64 0.0014 27.2 2.5 51 109-162 65-116 (126)
43 COG3326 Predicted membrane pro 24.9 37 0.00081 27.6 1.1 19 203-221 43-61 (94)
44 KOG2802 Membrane protein HUEL 24.5 76 0.0016 32.1 3.3 34 76-110 443-486 (503)
45 PF06698 DUF1192: Protein of u 24.1 1E+02 0.0022 23.0 3.1 35 76-117 15-49 (59)
46 PRK14292 chaperone protein Dna 24.0 30 0.00065 32.1 0.4 18 231-248 183-203 (371)
47 PF04102 SlyX: SlyX; InterPro 23.7 2.2E+02 0.0047 20.9 4.8 39 77-117 13-51 (69)
48 PHA03029 hypothetical protein; 23.6 57 0.0012 26.4 1.9 19 85-103 39-57 (92)
49 PRK14285 chaperone protein Dna 23.6 31 0.00067 32.3 0.4 20 229-248 183-205 (365)
50 PRK14279 chaperone protein Dna 23.6 31 0.00068 32.6 0.5 18 231-248 212-232 (392)
51 COG4980 GvpP Gas vesicle prote 23.5 23 0.00049 29.5 -0.4 18 203-220 8-25 (115)
52 PRK14298 chaperone protein Dna 23.3 28 0.00061 32.7 0.1 20 229-248 182-204 (377)
53 PHA02901 virus redox protein; 23.1 73 0.0016 25.2 2.3 40 69-108 28-73 (75)
54 PRK04406 hypothetical protein; 23.0 3.3E+02 0.0071 20.7 5.8 33 84-118 27-59 (75)
55 PF01486 K-box: K-box region; 22.9 1.8E+02 0.004 22.1 4.5 37 75-113 47-85 (100)
56 PF05277 DUF726: Protein of un 22.9 53 0.0012 31.3 1.8 68 148-221 3-78 (345)
57 PRK14289 chaperone protein Dna 22.8 32 0.00068 32.2 0.3 18 231-248 197-217 (386)
58 PRK10767 chaperone protein Dna 22.7 34 0.00074 31.8 0.5 17 232-248 182-201 (371)
59 PF13543 KSR1-SAM: SAM like do 22.5 1.1E+02 0.0024 25.8 3.5 35 72-110 89-123 (129)
60 PRK14284 chaperone protein Dna 22.5 38 0.00082 31.9 0.8 12 232-243 198-209 (391)
61 PRK13376 pyrB bifunctional asp 22.1 31 0.00067 34.7 0.1 12 189-200 465-476 (525)
62 KOG2706 Predicted membrane pro 22.0 93 0.002 31.0 3.3 93 105-203 126-236 (476)
63 PRK14295 chaperone protein Dna 21.9 35 0.00075 32.3 0.4 18 231-248 205-225 (389)
64 PRK10144 formate-dependent nit 21.2 83 0.0018 26.5 2.5 50 109-161 65-115 (126)
65 PRK14277 chaperone protein Dna 21.1 38 0.00082 31.9 0.5 17 232-248 199-218 (386)
66 PF10146 zf-C4H2: Zinc finger- 21.0 3.1E+02 0.0067 24.9 6.1 36 87-122 72-108 (230)
67 PRK00306 50S ribosomal protein 20.9 1.8E+02 0.0039 21.2 3.9 32 76-114 3-34 (66)
68 PHA01745 hypothetical protein 20.6 85 0.0018 30.2 2.7 38 135-173 102-139 (306)
69 COG5346 Predicted membrane pro 20.6 52 0.0011 28.5 1.1 19 204-222 110-128 (136)
70 CHL00154 rpl29 ribosomal prote 20.4 1.7E+02 0.0037 21.9 3.7 32 76-114 6-37 (67)
No 1
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=95.26 E-value=0.0025 Score=51.79 Aligned_cols=46 Identities=26% Similarity=0.424 Sum_probs=34.9
Q ss_pred ceecccCcchhH-HHHHHHHhhhhh-hhhhhcccccccccceeccccc
Q 025572 203 IVASFSGGAVGV-ISALMIVEVNNV-KQQEQKRCKYCLGTGIFLNLSS 248 (250)
Q Consensus 203 IVASFsGGAVGV-isalmvvE~nNv-kqQekkrC~YC~GTGyL~Cat~ 248 (250)
|.|...|=|||. |-.||+.+++|. |+++...|..|+|+|+-.|-.|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~v~C~~C~GsG~~~C~~C 58 (111)
T PLN03165 11 ISVGVVSIAVGIGIPVFYETQIDNAAKRENTQPCFPCSGTGAQVCRFC 58 (111)
T ss_pred hhhhhhhhhhccCCcEEEEEeeehhhhhccCCCCCCCCCCCCcCCCCC
Confidence 334444445664 567888888888 7888889999999999888876
No 2
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=73.24 E-value=1.2 Score=36.33 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=18.5
Q ss_pred hhhhcccccccccceeccccc
Q 025572 228 QQEQKRCKYCLGTGIFLNLSS 248 (250)
Q Consensus 228 qQekkrC~YC~GTGyL~Cat~ 248 (250)
+|....|..|+|+|...|..|
T Consensus 72 ~q~~~~C~~C~G~Gk~~C~~C 92 (111)
T PLN03165 72 EKEVSKCINCDGAGSLTCTTC 92 (111)
T ss_pred EEEEEECCCCCCcceeeCCCC
Confidence 567889999999999999887
No 3
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=71.25 E-value=7.5 Score=33.90 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=16.0
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHhhccccccch
Q 025572 138 PFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSL 173 (250)
Q Consensus 138 Pflp~lt~~tlk~yy~~~~~~v~~ii~FGGLiAP~l 173 (250)
+|..++. +.++.-......++.+++.|-+.+.|.+
T Consensus 213 ~~~~~~~-~al~~~~~~~~~~~~~lv~~l~~l~p~~ 247 (262)
T PF14257_consen 213 SFGSRFR-DALKNGWNALVSFLSGLVVFLVGLLPWL 247 (262)
T ss_pred CcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555554 3355544444444444444444444443
No 4
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=70.98 E-value=7.2 Score=36.55 Aligned_cols=80 Identities=13% Similarity=0.173 Sum_probs=47.6
Q ss_pred CCCcccccCCCCCCCCCCCcccc-cccccCCcCCCCCCCCcc--c-c----cCCCCcce--EeeCchhHHHHHhhhHHHH
Q 025572 18 KPLIPYNYHGGNSRFRRLNSNWR-CRASEPESSSFAPSIDAE--S-A----DKNAAGFC--IIEGPETVQDFAKMELQEI 87 (250)
Q Consensus 18 ~pl~~~~~~~~~~r~~~~~~~wr-~~as~~~sSsfa~s~~~~--s-s----d~~~~~fc--Iiegpetv~Dfa~MqlqEI 87 (250)
-|||+.|.+.. +.++..|+ .+.-.-.=.|..+..... + . ....-|+| |||+|+-..+|+.|..++|
T Consensus 52 CPfcpgne~~t----~~~~~~w~~~rv~~N~fPal~~~~~~~~~~~~~l~~~~~~~G~~eViv~sp~H~~~l~~~~~~~i 127 (346)
T PRK11720 52 CFLCPGNTRVT----GDVNPDYTGTYVFTNDFAALMPDTPDAPESDDPLFRCQSARGTSRVICFSPDHSKTLPELSVAAL 127 (346)
T ss_pred CCCCCCCCCCC----CCCCCCCCEEEEEcCCCchhccCCCCCCcccCcccccCccceEEEEEEECCCcCCChhHCCHHHH
Confidence 46666655442 23345787 544444333332211111 0 0 12234555 9999999999999999999
Q ss_pred HHHHHhhhhhhhHh
Q 025572 88 HDNIRSRRNKIFLH 101 (250)
Q Consensus 88 ~dNI~sRrnKIfll 101 (250)
++=|..=|++.--|
T Consensus 128 ~~v~~~~~~r~~~l 141 (346)
T PRK11720 128 REVVDTWQEQTAEL 141 (346)
T ss_pred HHHHHHHHHHHHHH
Confidence 99887776664433
No 5
>PLN02643 ADP-glucose phosphorylase
Probab=63.02 E-value=17 Score=33.77 Aligned_cols=80 Identities=14% Similarity=0.275 Sum_probs=46.3
Q ss_pred CCCcccccCCCCC-----CCCCCCcccccccccCCcCCCCCCCCcc----cc------cCCCCcc--eEeeCchhHHHHH
Q 025572 18 KPLIPYNYHGGNS-----RFRRLNSNWRCRASEPESSSFAPSIDAE----SA------DKNAAGF--CIIEGPETVQDFA 80 (250)
Q Consensus 18 ~pl~~~~~~~~~~-----r~~~~~~~wr~~as~~~sSsfa~s~~~~----ss------d~~~~~f--cIiegpetv~Dfa 80 (250)
-|||+-|.+.... |....+..|..+.-.-.=.|+.+..... +. ....-|+ -|||+|+-..+|+
T Consensus 43 CPfCpgne~~t~~ei~~~~~~~~~~~w~vrv~~N~fPal~~~~~~~~~~~~~~~~~~~~~~~~G~~eVii~sp~H~~~l~ 122 (336)
T PLN02643 43 CPFCIGHEHECAPEIFRVPDDASAPDWKVRVIENLYPALSRDLEPPCTEGQGEDYGGRRLPGFGFHDVVIETPVHSVQLS 122 (336)
T ss_pred CCCCCCCCCCCCcceeeccCCCCCCCCeEEEEeCCCccccCCCCCCcccccCcchhhcccceeeEEEEEEeCCccCCChH
Confidence 3666666444321 1111234788776655554443222111 10 1112344 5999999999999
Q ss_pred hhhHHHHHHHHHhhhhh
Q 025572 81 KMELQEIHDNIRSRRNK 97 (250)
Q Consensus 81 ~MqlqEI~dNI~sRrnK 97 (250)
+|..++|.+=|..=|++
T Consensus 123 ~~~~~~i~~v~~~~~~r 139 (336)
T PLN02643 123 DLPARHIGEVLKAYKKR 139 (336)
T ss_pred HCCHHHHHHHHHHHHHH
Confidence 99999999977664444
No 6
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.84 E-value=41 Score=32.38 Aligned_cols=35 Identities=31% Similarity=0.518 Sum_probs=24.6
Q ss_pred ccccCCCCCCCCCCCCCCcc-----------chhhHHHHHHHHHHH
Q 025572 124 EEQDNELPSFPSFIPFLPPL-----------SAANLKVYYATCFSL 158 (250)
Q Consensus 124 ee~~~e~p~~~S~iPflp~l-----------t~~tlk~yy~~~~~~ 158 (250)
..++|.-|-.||.||+.|=. =.|+.|.-|.+|...
T Consensus 96 ~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~yylwm~~ 141 (313)
T KOG3088|consen 96 VIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAYYLWMGL 141 (313)
T ss_pred cccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHHHHHHHH
Confidence 45677778899999999853 256777755555444
No 7
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=62.05 E-value=18 Score=33.16 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=25.8
Q ss_pred ceEeeCchhHHHHHhhhHHHHHHHHHhhhhh
Q 025572 67 FCIIEGPETVQDFAKMELQEIHDNIRSRRNK 97 (250)
Q Consensus 67 fcIiegpetv~Dfa~MqlqEI~dNI~sRrnK 97 (250)
.-|||+|+-..+|++|+.++|.+=|..=+++
T Consensus 95 eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r 125 (329)
T cd00608 95 EVICFSPDHNLTLAEMSVAEIREVVEAWAER 125 (329)
T ss_pred EEEEECCcccCChhhCCHHHHHHHHHHHHHH
Confidence 3489999999999999999999977654444
No 8
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=60.42 E-value=3.1 Score=29.93 Aligned_cols=19 Identities=37% Similarity=0.534 Sum_probs=14.3
Q ss_pred hhhhhhcccccccccceec
Q 025572 226 VKQQEQKRCKYCLGTGIFL 244 (250)
Q Consensus 226 vkqQekkrC~YC~GTGyL~ 244 (250)
.-+|....|..|+|+|+..
T Consensus 36 ~~~~~~~~C~~C~G~G~~i 54 (66)
T PF00684_consen 36 GVFQMQQTCPKCGGTGKII 54 (66)
T ss_dssp TTEEEEEE-TTTSSSSEE-
T ss_pred eEEEEEEECCCCcceeeEE
Confidence 5567888999999999885
No 9
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=50.04 E-value=31 Score=32.46 Aligned_cols=39 Identities=10% Similarity=0.217 Sum_probs=30.6
Q ss_pred CCcce--EeeCchhHHHHHhhhHHHHHHHHHhhhhhhhHhH
Q 025572 64 AAGFC--IIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHM 102 (250)
Q Consensus 64 ~~~fc--Iiegpetv~Dfa~MqlqEI~dNI~sRrnKIfllm 102 (250)
.-|.| |||+|+--.+|++|..++|++=|..=|++.--|+
T Consensus 102 ~~G~~eVii~sp~H~~~l~~m~~~~i~~v~~~~~~r~~~l~ 142 (347)
T TIGR00209 102 ARGTSRVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELG 142 (347)
T ss_pred CCeeEEEEEeCCCccCChhHCCHHHHHHHHHHHHHHHHHHH
Confidence 34555 9999999999999999999997777666544333
No 10
>KOG2090 consensus Metalloendopeptidase family - mitochondrial intermediate peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=49.36 E-value=19 Score=37.64 Aligned_cols=33 Identities=21% Similarity=0.573 Sum_probs=30.8
Q ss_pred EeeCchhHHHHHhhhHHHHHHHHHhhhhhhhHhHHHH
Q 025572 69 IIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEV 105 (250)
Q Consensus 69 Iiegpetv~Dfa~MqlqEI~dNI~sRrnKIfllmEEV 105 (250)
+.++|++|++| ++|+.++.+.|-.|+|-++.++
T Consensus 299 ~a~~pk~V~~F----l~~Ls~k~~~~~~kel~~i~~m 331 (704)
T KOG2090|consen 299 LAKNPKTVRSF----LEELSEKLSEKTDKELAVIRDM 331 (704)
T ss_pred ccCChHHHHHH----HHHHHHhhhHHHHHHHHHHHHH
Confidence 58999999999 5799999999999999999988
No 11
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=48.54 E-value=15 Score=32.46 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=12.8
Q ss_pred hcccccccccceec-----cccc
Q 025572 231 QKRCKYCLGTGIFL-----NLSS 248 (250)
Q Consensus 231 kkrC~YC~GTGyL~-----Cat~ 248 (250)
...|.-|+|+|+.. |-.|
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C 121 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTC 121 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCC
Confidence 56788888888753 7666
No 12
>PRK14293 chaperone protein DnaJ; Provisional
Probab=42.51 E-value=9.8 Score=35.46 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=12.8
Q ss_pred ccccccccccee---ccccc
Q 025572 232 KRCKYCLGTGIF---LNLSS 248 (250)
Q Consensus 232 krC~YC~GTGyL---~Cat~ 248 (250)
..|..|.|+|+. .|-.|
T Consensus 187 ~~C~~C~G~G~~~~~~C~~C 206 (374)
T PRK14293 187 SECPTCNGTGQVIEDPCDAC 206 (374)
T ss_pred eeCCCCCcceeEeccCCCCC
Confidence 578888888887 56665
No 13
>PRK00295 hypothetical protein; Provisional
Probab=42.49 E-value=1.1e+02 Score=22.80 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=29.3
Q ss_pred HHhhhHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhhhhhhcCCCcccccCCCCC
Q 025572 79 FAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPS 132 (250)
Q Consensus 79 fa~MqlqEI~dNI~sRrnKIfllmEEVRRLRiQqrik~~e~g~~~ee~~~e~p~ 132 (250)
|..-.++++-+=|..-...|-.|-.++|.|+ +|++..+-+.....++...|-
T Consensus 16 ~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~~~~~~~~~e~~PPH 67 (68)
T PRK00295 16 FQDDTIQALNDVLVEQQRVIERLQLQMAALI--KRQEEMVGQFGSFEEEAPPPH 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCCCCCcCC
Confidence 4444466676666666667777777888874 355554433333333334443
No 14
>PRK14283 chaperone protein DnaJ; Provisional
Probab=40.35 E-value=11 Score=35.20 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=14.5
Q ss_pred hccccccccccee---ccccc
Q 025572 231 QKRCKYCLGTGIF---LNLSS 248 (250)
Q Consensus 231 kkrC~YC~GTGyL---~Cat~ 248 (250)
...|..|+|+|+. +|..|
T Consensus 189 ~~~C~~C~G~G~~~~~~C~~C 209 (378)
T PRK14283 189 VTTCPDCQGEGKIVEKPCSNC 209 (378)
T ss_pred EEECCCCCccceecCCCCCCC
Confidence 3589999999988 78777
No 15
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=38.54 E-value=41 Score=24.01 Aligned_cols=33 Identities=15% Similarity=0.380 Sum_probs=26.2
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhhh
Q 025572 76 VQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIK 115 (250)
Q Consensus 76 v~Dfa~MqlqEI~dNI~sRrnKIfllmEEVRRLRiQqrik 115 (250)
++|+-+|..+|+++.|..=+. |.-.||.|..+.
T Consensus 1 ~~elr~ls~~eL~~~l~elk~-------eL~~Lr~q~~~~ 33 (58)
T PF00831_consen 1 AKELRELSDEELQEKLEELKK-------ELFNLRFQKATG 33 (58)
T ss_dssp CHHHCHSHHHHHHHHHHHHHH-------HHHHHHHHHHHS
T ss_pred CHHHHhCCHHHHHHHHHHHHH-------HHHHHHHHHHhc
Confidence 368889999999998877554 667899998773
No 16
>PRK14297 chaperone protein DnaJ; Provisional
Probab=37.97 E-value=12 Score=34.92 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=13.5
Q ss_pred hhccccccccccee---ccccc
Q 025572 230 EQKRCKYCLGTGIF---LNLSS 248 (250)
Q Consensus 230 ekkrC~YC~GTGyL---~Cat~ 248 (250)
.+..|..|+|+|+. .|..|
T Consensus 190 ~~~~C~~C~G~G~~~~~~C~~C 211 (380)
T PRK14297 190 STTTCDKCGGSGKVIEDPCNKC 211 (380)
T ss_pred EEEeCCCCCCCceEcCCCCCCC
Confidence 35688888888876 46555
No 17
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=37.74 E-value=1.3e+02 Score=27.46 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhccc
Q 025572 154 TCFSLIAGVILFGGL 168 (250)
Q Consensus 154 ~~~~~v~~ii~FGGL 168 (250)
...++++|.+++|++
T Consensus 336 l~~~~~~gl~l~~~~ 350 (362)
T TIGR01010 336 ILATFVILLILYGVL 350 (362)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555543
No 18
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=37.57 E-value=12 Score=35.99 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=15.9
Q ss_pred hhhhccccccccccee-----ccccc
Q 025572 228 QQEQKRCKYCLGTGIF-----LNLSS 248 (250)
Q Consensus 228 qQekkrC~YC~GTGyL-----~Cat~ 248 (250)
+|.+..|..|.|+|+. +|.+|
T Consensus 189 ~q~~~~C~~C~G~G~~i~~~~~C~~C 214 (421)
T PTZ00037 189 HQTQSTCNSCNGQGKIIPESKKCKNC 214 (421)
T ss_pred eEEEEeCCCCCCcceeccccccCCcC
Confidence 4567788888888886 47776
No 19
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=37.35 E-value=14 Score=36.20 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=12.1
Q ss_pred hhcccccccccceeccccc
Q 025572 230 EQKRCKYCLGTGIFLNLSS 248 (250)
Q Consensus 230 ekkrC~YC~GTGyL~Cat~ 248 (250)
.+.+|.-|||.|-+.|-||
T Consensus 233 t~~~C~~C~G~G~~~C~tC 251 (406)
T KOG2813|consen 233 THDLCYMCHGRGIKECHTC 251 (406)
T ss_pred ccchhhhccCCCcccCCcc
Confidence 4556666666666666665
No 20
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=37.24 E-value=7.1 Score=37.60 Aligned_cols=63 Identities=29% Similarity=0.424 Sum_probs=37.9
Q ss_pred cCCCchHHHHHHhhC------cccc---ccccCcceecccCcchhHHHHHHHHhhhhhh------hhhhcccccccccce
Q 025572 178 GIGGTSYADFIQSVH------LPMQ---LSQVDPIVASFSGGAVGVISALMIVEVNNVK------QQEQKRCKYCLGTGI 242 (250)
Q Consensus 178 GlGgtsY~dFIrs~h------LP~Q---LsqVDPIVASFsGGAVGVisalmvvE~nNvk------qQekkrC~YC~GTGy 242 (250)
+|||.=--|||...+ |=.+ ...=|+.-..+.| +|.|=++|+--=| ++-...|++|+|||+
T Consensus 327 nigGiIvIDFIdM~~~~~~~~v~~~l~~~~~~D~~k~~v~~-----~T~lGLvE~TRkr~~~sL~e~~~~~Cp~C~G~G~ 401 (414)
T TIGR00757 327 NLGGIIIIDFIDMKSEKNQRRVLERLKEALRRDRARIQISG-----ISEFGLVEMTRKRLRESLMEVLGTVCPHCSGTGI 401 (414)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCcEEcc-----cCCCcceEEeccccCcChHHHhcCCCCCCcCeeE
Confidence 566666677775321 1111 1234555544433 6778889986443 333478999999999
Q ss_pred ecc
Q 025572 243 FLN 245 (250)
Q Consensus 243 L~C 245 (250)
..-
T Consensus 402 v~s 404 (414)
T TIGR00757 402 VKT 404 (414)
T ss_pred Ecc
Confidence 653
No 21
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=37.09 E-value=12 Score=36.73 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.5
Q ss_pred hhhhhcccccccccceeccccc
Q 025572 227 KQQEQKRCKYCLGTGIFLNLSS 248 (250)
Q Consensus 227 kqQekkrC~YC~GTGyL~Cat~ 248 (250)
.-.-+++|.-|.|.|.-+|+||
T Consensus 241 ~G~G~~~C~tC~grG~k~C~TC 262 (406)
T KOG2813|consen 241 HGRGIKECHTCKGRGKKPCTTC 262 (406)
T ss_pred cCCCcccCCcccCCCCcccccc
Confidence 3457899999999999999998
No 22
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=34.47 E-value=21 Score=23.54 Aligned_cols=11 Identities=45% Similarity=1.047 Sum_probs=8.7
Q ss_pred hcccccccccc
Q 025572 231 QKRCKYCLGTG 241 (250)
Q Consensus 231 kkrC~YC~GTG 241 (250)
-++|.+|.+.|
T Consensus 3 ~~~C~~C~~~~ 13 (33)
T PF08792_consen 3 LKKCSKCGGNG 13 (33)
T ss_pred ceEcCCCCCCe
Confidence 47899998855
No 23
>PRK14301 chaperone protein DnaJ; Provisional
Probab=33.75 E-value=16 Score=34.20 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=14.3
Q ss_pred hhhccccccccccee---ccccc
Q 025572 229 QEQKRCKYCLGTGIF---LNLSS 248 (250)
Q Consensus 229 QekkrC~YC~GTGyL---~Cat~ 248 (250)
|....|..|+|+|+. .|..|
T Consensus 181 ~~~~~C~~C~G~G~~~~~~C~~C 203 (373)
T PRK14301 181 QIAVPCPVCRGEGRVITHPCPKC 203 (373)
T ss_pred EEEEeCCCCCceeeecCCCCCCC
Confidence 347788888888876 46655
No 24
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=33.63 E-value=91 Score=30.49 Aligned_cols=87 Identities=20% Similarity=0.266 Sum_probs=59.9
Q ss_pred eeccCCCCCCcccccCCCCCCCCCCCcccccccccCCcCCCCCCCCcccccCC-----CCcce--EeeCchhHHHHHhhh
Q 025572 11 AGLYPAKKPLIPYNYHGGNSRFRRLNSNWRCRASEPESSSFAPSIDAESADKN-----AAGFC--IIEGPETVQDFAKME 83 (250)
Q Consensus 11 a~s~~~~~pl~~~~~~~~~~r~~~~~~~wr~~as~~~sSsfa~s~~~~ssd~~-----~~~fc--Iiegpetv~Dfa~Mq 83 (250)
+.||.+.-|||+-+-.+.--|||+-++.|-+---=++=+-+.|+.+...++.. .-|+| |+++|..---+..|+
T Consensus 47 ~p~~dp~cplcpG~~ra~g~~np~ydstyvf~NdypA~~~d~p~~~~~~~~~lfk~~~v~G~c~Vicf~Pnh~ltLp~m~ 126 (354)
T KOG2958|consen 47 TPSYDPLCPLCPGNIRATGFRNPDYDSTYVFDNDYPALRRDQPTQGQDESTGLFKTISVKGVCKVICFSPNHNLTLPLMD 126 (354)
T ss_pred CCcCCCCCCCCCCcchhccccCCCCccceeccCCchhhccCCCCCCCCCCccchhheeecceeEEEEeCCccccccccCC
Confidence 34677777888887766668899888899554443433444444444444422 34554 999999999999999
Q ss_pred HHHHHHHHHhhhhh
Q 025572 84 LQEIHDNIRSRRNK 97 (250)
Q Consensus 84 lqEI~dNI~sRrnK 97 (250)
..||.+=+.+-...
T Consensus 127 ~~~i~~vv~aw~~~ 140 (354)
T KOG2958|consen 127 VVEIRDVVDAWKKL 140 (354)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999977665543
No 25
>PRK14290 chaperone protein DnaJ; Provisional
Probab=33.44 E-value=14 Score=34.31 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=14.9
Q ss_pred hhhhhhccccccccccee---ccccc
Q 025572 226 VKQQEQKRCKYCLGTGIF---LNLSS 248 (250)
Q Consensus 226 vkqQekkrC~YC~GTGyL---~Cat~ 248 (250)
+.+|....|..|.|+|+. .|-.|
T Consensus 186 ~~~~~~~~C~~C~G~G~~~~~~C~~C 211 (365)
T PRK14290 186 FRMVTVTTCRTCGGRGRIPEEKCPRC 211 (365)
T ss_pred EEEEEEEeCCCCCCceeEccCCCCCC
Confidence 345556778888888876 35444
No 26
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=30.97 E-value=30 Score=30.57 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=22.2
Q ss_pred CCCCCCc-cchhhHHHHHHHHHHHHHHHHhhccccccc
Q 025572 136 FIPFLPP-LSAANLKVYYATCFSLIAGVILFGGLLAPS 172 (250)
Q Consensus 136 ~iPflp~-lt~~tlk~yy~~~~~~v~~ii~FGGLiAP~ 172 (250)
.||.||- +.+.... ++.+++....++.+||.+.+=+
T Consensus 152 liPllpy~~~~~~~~-~~~s~~~~~~aL~~~G~~~a~~ 188 (218)
T cd02432 152 LLPLLAILLAPAAWK-VPVTIIATLLALALTGYVSARL 188 (218)
T ss_pred HHHHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554 2233333 6667777778888888877644
No 27
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=30.80 E-value=2e+02 Score=26.70 Aligned_cols=35 Identities=11% Similarity=0.053 Sum_probs=19.6
Q ss_pred CccchhhHHHHHH---HHHHHHHHHHhhccccccchhh
Q 025572 141 PPLSAANLKVYYA---TCFSLIAGVILFGGLLAPSLEL 175 (250)
Q Consensus 141 p~lt~~tlk~yy~---~~~~~v~~ii~FGGLiAP~lEl 175 (250)
|++.-+++++=.. ....+++.+..+..++++++..
T Consensus 293 ~~ldl~~I~~QslrL~~~~l~~~~~~~l~~iWsdll~a 330 (340)
T PF12794_consen 293 PELDLEQISQQSLRLLRSILLLILLVGLYWIWSDLLPA 330 (340)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666665332 3344445555566667777654
No 28
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=30.57 E-value=20 Score=32.92 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=12.2
Q ss_pred hccccccccccee---ccccc
Q 025572 231 QKRCKYCLGTGIF---LNLSS 248 (250)
Q Consensus 231 kkrC~YC~GTGyL---~Cat~ 248 (250)
...|..|.|+|+. .|..|
T Consensus 186 ~~~C~~C~G~G~~~~~~C~~C 206 (354)
T TIGR02349 186 QQTCPTCGGEGKIIKEPCSTC 206 (354)
T ss_pred EEecCCCCCcceecCCCCCCC
Confidence 4578888888776 36655
No 29
>KOG4122 consensus Mitochondrial/chloroplast ribosomal protein L36 [Translation, ribosomal structure and biogenesis]
Probab=30.04 E-value=25 Score=24.70 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=17.8
Q ss_pred hhhhhhcccccc-----cccceecccc
Q 025572 226 VKQQEQKRCKYC-----LGTGIFLNLS 247 (250)
Q Consensus 226 vkqQekkrC~YC-----~GTGyL~Cat 247 (250)
||.--||||+.| .|.+|..|-+
T Consensus 3 vk~svkk~C~~Cy~VrRrgR~yViC~~ 29 (38)
T KOG4122|consen 3 VKASVKKRCKDCYLVRRRGRVYVICKT 29 (38)
T ss_pred hhHHHHHhhhhceEEEEcccEEEEcCC
Confidence 456678999999 4889999965
No 30
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=29.34 E-value=25 Score=31.02 Aligned_cols=13 Identities=46% Similarity=1.065 Sum_probs=11.6
Q ss_pred cccccccccceec
Q 025572 232 KRCKYCLGTGIFL 244 (250)
Q Consensus 232 krC~YC~GTGyL~ 244 (250)
..|+-|+|+||..
T Consensus 116 ~~C~~C~G~G~v~ 128 (186)
T TIGR02642 116 RECDTCAGTGRFR 128 (186)
T ss_pred CCCCCCCCccEEe
Confidence 7899999999964
No 31
>PRK14300 chaperone protein DnaJ; Provisional
Probab=29.10 E-value=22 Score=33.27 Aligned_cols=18 Identities=22% Similarity=0.543 Sum_probs=12.3
Q ss_pred hccccccccccee---ccccc
Q 025572 231 QKRCKYCLGTGIF---LNLSS 248 (250)
Q Consensus 231 kkrC~YC~GTGyL---~Cat~ 248 (250)
...|..|+|+|+. +|-+|
T Consensus 184 ~~~C~~C~G~G~~~~~~C~~C 204 (372)
T PRK14300 184 EQACHKCQGNGQIIKNPCKKC 204 (372)
T ss_pred EEeCCCCCccceEeCCCCCCC
Confidence 3478888888876 46555
No 32
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=29.00 E-value=11 Score=33.12 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=12.2
Q ss_pred HHHhhCcccccccc
Q 025572 187 FIQSVHLPMQLSQV 200 (250)
Q Consensus 187 FIrs~hLP~QLsqV 200 (250)
||++-+++.||++|
T Consensus 70 ~i~~~s~~~Ql~e~ 83 (165)
T COG1656 70 LIRSDSIEEQLAEF 83 (165)
T ss_pred EEeCCCHHHHHHHH
Confidence 78899999999886
No 33
>PRK14286 chaperone protein DnaJ; Provisional
Probab=28.07 E-value=23 Score=33.19 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=11.1
Q ss_pred hhccccccccccee---ccccc
Q 025572 230 EQKRCKYCLGTGIF---LNLSS 248 (250)
Q Consensus 230 ekkrC~YC~GTGyL---~Cat~ 248 (250)
....|..|+|+|+. .|..|
T Consensus 188 ~~~~C~~C~G~G~~~~~~C~~C 209 (372)
T PRK14286 188 VATTCPTCRGKGTVISNPCKTC 209 (372)
T ss_pred EEEeCCCCCceeeEecccCCCC
Confidence 34467777777764 35554
No 34
>PRK11712 ribonuclease G; Provisional
Probab=27.89 E-value=12 Score=37.13 Aligned_cols=62 Identities=24% Similarity=0.341 Sum_probs=38.1
Q ss_pred cCCCchHHHHHHhhCccc---------cccccCcceecccCcchhHHHHHHHHhhhhh------hhhhhcccccccccce
Q 025572 178 GIGGTSYADFIQSVHLPM---------QLSQVDPIVASFSGGAVGVISALMIVEVNNV------KQQEQKRCKYCLGTGI 242 (250)
Q Consensus 178 GlGgtsY~dFIrs~hLP~---------QLsqVDPIVASFsGGAVGVisalmvvE~nNv------kqQekkrC~YC~GTGy 242 (250)
+|||.=--|||..-+=.- +.-+=|+--..+. =+|.|=+||+--= .+.-...|++|+|||+
T Consensus 339 ~igGiIviDFidM~~~~~r~~v~~~l~~~l~~D~~k~~v~-----~~T~lGLvEmTRkR~r~sl~~~l~~~Cp~C~G~G~ 413 (489)
T PRK11712 339 NLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTNIN-----GFSQLGLVEMTRKRTRESLEHVLCGECPTCHGRGT 413 (489)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhhcCCCCceEc-----ccCCCceEEEEecccCCChHHHhcCCCCCCCCCCC
Confidence 677777777776322111 1223455444333 3677888998643 3444578999999998
Q ss_pred ec
Q 025572 243 FL 244 (250)
Q Consensus 243 L~ 244 (250)
..
T Consensus 414 v~ 415 (489)
T PRK11712 414 VK 415 (489)
T ss_pred cC
Confidence 64
No 35
>PHA02683 ORF078 thioredoxin-like protein; Provisional
Probab=27.61 E-value=57 Score=25.78 Aligned_cols=40 Identities=28% Similarity=0.451 Sum_probs=28.0
Q ss_pred EeeCchhHHHHHhhh---HHHHHHHHHhhhhhhhH---hHHHHHHH
Q 025572 69 IIEGPETVQDFAKME---LQEIHDNIRSRRNKIFL---HMEEVRRL 108 (250)
Q Consensus 69 Iiegpetv~Dfa~Mq---lqEI~dNI~sRrnKIfl---lmEEVRRL 108 (250)
|.|.+|+++=...=| +.-+.+=..+=|||-|+ |-+|+||.
T Consensus 28 l~eD~~~ikm~L~sqP~k~~iLk~FL~~~RNKt~~~kiLD~EirRv 73 (75)
T PHA02683 28 INEDRENIRMVLESQPNKLRILKEFLATCRNKTFIYKILDDEIRRV 73 (75)
T ss_pred HHcCHHHHHHHHHcCccHHHHHHHHHHHHhccchhhhhcCHHHHHh
Confidence 567777766444434 44566677888999884 78999984
No 36
>PRK14287 chaperone protein DnaJ; Provisional
Probab=27.51 E-value=23 Score=33.14 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=12.7
Q ss_pred hccccccccccee---ccccc
Q 025572 231 QKRCKYCLGTGIF---LNLSS 248 (250)
Q Consensus 231 kkrC~YC~GTGyL---~Cat~ 248 (250)
...|..|+|+|+. .|..|
T Consensus 181 ~~~C~~C~G~G~~~~~~C~~C 201 (371)
T PRK14287 181 RRVCHHCEGTGKIIKQKCATC 201 (371)
T ss_pred EEeCCCCCCCCccccccCCCC
Confidence 4478888888875 47666
No 37
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=27.23 E-value=1.4e+02 Score=25.18 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHhhhhhhhHhHHHH
Q 025572 81 KMELQEIHDNIRSRRNKIFLHMEEV 105 (250)
Q Consensus 81 ~MqlqEI~dNI~sRrnKIfllmEEV 105 (250)
.++.+|+|. ++.|..-|+|||
T Consensus 69 ~~~~~e~q~----kK~KLl~mL~eV 89 (140)
T PF07526_consen 69 PAERQELQR----KKAKLLSMLDEV 89 (140)
T ss_pred hhhHHHHHH----HHHHHHHHHHHH
Confidence 567777776 899999999998
No 38
>PRK14294 chaperone protein DnaJ; Provisional
Probab=26.84 E-value=26 Score=32.62 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=13.6
Q ss_pred hhccccccccccee---ccccc
Q 025572 230 EQKRCKYCLGTGIF---LNLSS 248 (250)
Q Consensus 230 ekkrC~YC~GTGyL---~Cat~ 248 (250)
....|..|.|+|+. .|-.|
T Consensus 182 ~~~~C~~C~G~G~~~~~~C~~C 203 (366)
T PRK14294 182 IRTTCPRCRGMGKVIVSPCKTC 203 (366)
T ss_pred EEeeCCCCCCcCeecCcCCCCC
Confidence 45688888888876 46555
No 39
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=26.05 E-value=22 Score=30.96 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=22.1
Q ss_pred cCcceecccCcchhHHHHHHHHhhhhhhhhhhcccc
Q 025572 200 VDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCK 235 (250)
Q Consensus 200 VDPIVASFsGGAVGVisalmvvE~nNvkqQekkrC~ 235 (250)
|=+||+++.-=+||.+|+++. =|.||.|.
T Consensus 117 IaGIvsav~valvGAvsSyia-------YqkKKlCF 145 (169)
T PF12301_consen 117 IAGIVSAVVVALVGAVSSYIA-------YQKKKLCF 145 (169)
T ss_pred hhhHHHHHHHHHHHHHHHHHH-------HHhhccce
Confidence 456777777778888888864 47888887
No 40
>PF13442 Cytochrome_CBB3: Cytochrome C oxidase, cbb3-type, subunit III ; PDB: 1KB0_A 2DGE_D 2CE1_A 2CE0_A 2V07_A 1W2L_A 2ZOO_A 2ZBO_G 1DVV_A 2EXV_A ....
Probab=25.72 E-value=17 Score=25.02 Aligned_cols=11 Identities=36% Similarity=1.078 Sum_probs=9.0
Q ss_pred hcccccccccc
Q 025572 231 QKRCKYCLGTG 241 (250)
Q Consensus 231 kkrC~YC~GTG 241 (250)
++.|.-|||+|
T Consensus 11 ~~~C~~CH~~~ 21 (67)
T PF13442_consen 11 EQNCASCHGPG 21 (67)
T ss_dssp HHHTHHHHGTG
T ss_pred HhHhHHhcCCC
Confidence 45899999976
No 41
>PRK14282 chaperone protein DnaJ; Provisional
Probab=25.39 E-value=28 Score=32.44 Aligned_cols=18 Identities=28% Similarity=0.619 Sum_probs=11.8
Q ss_pred hccccccccccee---ccccc
Q 025572 231 QKRCKYCLGTGIF---LNLSS 248 (250)
Q Consensus 231 kkrC~YC~GTGyL---~Cat~ 248 (250)
...|..|+|+|+. .|..|
T Consensus 195 ~~~C~~C~G~G~~~~~~C~~C 215 (369)
T PRK14282 195 ERTCERCGGTGKIPGEYCHEC 215 (369)
T ss_pred EEECCCCCCcceeCCCCCCCC
Confidence 3477777777765 46555
No 42
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=24.96 E-value=64 Score=27.16 Aligned_cols=51 Identities=16% Similarity=0.328 Sum_probs=32.6
Q ss_pred HHHHhhhhhhcCCCcccccCC-CCCCCCCCCCCCccchhhHHHHHHHHHHHHHHH
Q 025572 109 RIQQRIKNAELGISKEEQDNE-LPSFPSFIPFLPPLSAANLKVYYATCFSLIAGV 162 (250)
Q Consensus 109 RiQqrik~~e~g~~~ee~~~e-~p~~~S~iPflp~lt~~tlk~yy~~~~~~v~~i 162 (250)
.|+++|+. |-+|+|=-+- ...|..+|=+-||++..|+-.+..-.+.++.|+
T Consensus 65 ~Vr~~i~~---G~Sd~eI~~~~v~RYG~~Vly~Pp~~~~t~~LW~~P~lll~~G~ 116 (126)
T TIGR03147 65 EVYSMVNE---GKSNQQIIDFMTARFGDFVLYNPPFKWQTLLLWLLPVLLLLLAF 116 (126)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHhcCCeEEecCCCCcchHHHHHHHHHHHHHHH
Confidence 45566655 5544332222 456888888999999999877666555554443
No 43
>COG3326 Predicted membrane protein [Function unknown]
Probab=24.85 E-value=37 Score=27.60 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=15.8
Q ss_pred ceecccCcchhHHHHHHHH
Q 025572 203 IVASFSGGAVGVISALMIV 221 (250)
Q Consensus 203 IVASFsGGAVGVisalmvv 221 (250)
.+-++.||++|++.|.++.
T Consensus 43 l~~allGG~~Ga~~a~~~f 61 (94)
T COG3326 43 LLIALLGGWFGAWLAMQLF 61 (94)
T ss_pred HHHHHHcchHHHHHHHHHH
Confidence 4568999999999998764
No 44
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=24.51 E-value=76 Score=32.10 Aligned_cols=34 Identities=44% Similarity=0.454 Sum_probs=22.7
Q ss_pred HHHHHhhhHHHHHHH--------HHhh--hhhhhHhHHHHHHHHH
Q 025572 76 VQDFAKMELQEIHDN--------IRSR--RNKIFLHMEEVRRLRI 110 (250)
Q Consensus 76 v~Dfa~MqlqEI~dN--------I~sR--rnKIfllmEEVRRLRi 110 (250)
-|||||| ++|||.| +.+. -|-|=+|.-||-||--
T Consensus 443 kqd~akm-l~e~~~~~~~e~le~fml~~GEnivd~lG~EvDRlEk 486 (503)
T KOG2802|consen 443 KQDFAKM-LQEIQEVKTPEELETFMLKHGENIVDTLGAEVDRLEK 486 (503)
T ss_pred HHHHHHH-HHHHHhcCCHHHHHHHHHHcchHHHHHhhhHHHHHHH
Confidence 4799998 6777764 3332 3556678888887753
No 45
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=24.06 E-value=1e+02 Score=23.05 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=27.8
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhhhhh
Q 025572 76 VQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNA 117 (250)
Q Consensus 76 v~Dfa~MqlqEI~dNI~sRrnKIfllmEEVRRLRiQqrik~~ 117 (250)
=+|+-.|..+|+++ +|-+|=.|+-|+|=...-|.+
T Consensus 15 g~dLs~lSv~EL~~-------RIa~L~aEI~R~~~~~~~K~a 49 (59)
T PF06698_consen 15 GEDLSLLSVEELEE-------RIALLEAEIARLEAAIAKKSA 49 (59)
T ss_pred CCCchhcCHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 37888999999987 567888899998876666554
No 46
>PRK14292 chaperone protein DnaJ; Provisional
Probab=24.04 E-value=30 Score=32.11 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=11.6
Q ss_pred hccccccccccee---ccccc
Q 025572 231 QKRCKYCLGTGIF---LNLSS 248 (250)
Q Consensus 231 kkrC~YC~GTGyL---~Cat~ 248 (250)
...|..|+|+|+. .|-.|
T Consensus 183 ~~~C~~C~G~G~~~~~~C~~C 203 (371)
T PRK14292 183 QQPCPTCRGEGQIITDPCTVC 203 (371)
T ss_pred eeecCCCcccceecCCCCCCC
Confidence 4467777777765 45555
No 47
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.70 E-value=2.2e+02 Score=20.93 Aligned_cols=39 Identities=21% Similarity=0.362 Sum_probs=26.5
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhhhhh
Q 025572 77 QDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNA 117 (250)
Q Consensus 77 ~Dfa~MqlqEI~dNI~sRrnKIfllmEEVRRLRiQqrik~~ 117 (250)
-=|..-.++++.+-+..-..+|=-|=++++.|+- ||++.
T Consensus 13 la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~--rl~~~ 51 (69)
T PF04102_consen 13 LAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE--RLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--T----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHh
Confidence 3455556888888888888888888888888764 45444
No 48
>PHA03029 hypothetical protein; Provisional
Probab=23.61 E-value=57 Score=26.38 Aligned_cols=19 Identities=37% Similarity=0.697 Sum_probs=14.7
Q ss_pred HHHHHHHHhhhhhhhHhHH
Q 025572 85 QEIHDNIRSRRNKIFLHME 103 (250)
Q Consensus 85 qEI~dNI~sRrnKIfllmE 103 (250)
..|.+||+|||.-....|.
T Consensus 39 aai~qnirsrrkg~ywfln 57 (92)
T PHA03029 39 AAIDQNIRSRRKGLYWFLN 57 (92)
T ss_pred HHHHHHHHHHhhhHHHHHH
Confidence 4578999999987766554
No 49
>PRK14285 chaperone protein DnaJ; Provisional
Probab=23.56 E-value=31 Score=32.26 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=12.5
Q ss_pred hhhccccccccccee---ccccc
Q 025572 229 QEQKRCKYCLGTGIF---LNLSS 248 (250)
Q Consensus 229 QekkrC~YC~GTGyL---~Cat~ 248 (250)
|-...|..|.|+|+. +|-.|
T Consensus 183 ~~~~~C~~C~G~G~~~~~~C~~C 205 (365)
T PRK14285 183 RVTTTCPKCYGNGKIISNPCKSC 205 (365)
T ss_pred EEeeecCCCCCcccccCCCCCCC
Confidence 345677777777765 35554
No 50
>PRK14279 chaperone protein DnaJ; Provisional
Probab=23.56 E-value=31 Score=32.59 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=12.2
Q ss_pred hccccccccccee---ccccc
Q 025572 231 QKRCKYCLGTGIF---LNLSS 248 (250)
Q Consensus 231 kkrC~YC~GTGyL---~Cat~ 248 (250)
...|..|+|+|+. .|..|
T Consensus 212 ~~~C~~C~G~G~~i~~~C~~C 232 (392)
T PRK14279 212 SEPCTDCRGTGSIIEDPCEEC 232 (392)
T ss_pred EEecCCCCceeEEeCCcCCCC
Confidence 3678888888875 35544
No 51
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=23.55 E-value=23 Score=29.51 Aligned_cols=18 Identities=28% Similarity=0.639 Sum_probs=15.4
Q ss_pred ceecccCcchhHHHHHHH
Q 025572 203 IVASFSGGAVGVISALMI 220 (250)
Q Consensus 203 IVASFsGGAVGVisalmv 220 (250)
++..+.||+||..+||++
T Consensus 8 l~G~liGgiiGa~aaLL~ 25 (115)
T COG4980 8 LFGILIGGIIGAAAALLF 25 (115)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456688999999999987
No 52
>PRK14298 chaperone protein DnaJ; Provisional
Probab=23.34 E-value=28 Score=32.71 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=12.7
Q ss_pred hhhccccccccccee---ccccc
Q 025572 229 QEQKRCKYCLGTGIF---LNLSS 248 (250)
Q Consensus 229 QekkrC~YC~GTGyL---~Cat~ 248 (250)
|-...|..|+|+|+. .|-.|
T Consensus 182 ~~~~~C~~C~G~G~~~~~~C~~C 204 (377)
T PRK14298 182 VTTTTCSTCHGRGQVIESPCPVC 204 (377)
T ss_pred EEEEeCCCCCCCCcccCCCCCCC
Confidence 455677777777765 35444
No 53
>PHA02901 virus redox protein; Provisional
Probab=23.12 E-value=73 Score=25.19 Aligned_cols=40 Identities=28% Similarity=0.428 Sum_probs=27.7
Q ss_pred EeeCchhHHHHHhhh---HHHHHHHHHhhhhhhhH---hHHHHHHH
Q 025572 69 IIEGPETVQDFAKME---LQEIHDNIRSRRNKIFL---HMEEVRRL 108 (250)
Q Consensus 69 Iiegpetv~Dfa~Mq---lqEI~dNI~sRrnKIfl---lmEEVRRL 108 (250)
|.|.+||++=...=| +.-+.+=..+=|||-|+ |-+|+||.
T Consensus 28 l~eDr~~ik~~L~sqP~k~~iLk~FL~~~RNKt~~~kiLD~EirRV 73 (75)
T PHA02901 28 LKEDRETIRAILESQPYKKKILKQFLATSRNKTFLYKILDPEIRRV 73 (75)
T ss_pred HHhCHHHHHHHHHcCchHHHHHHHHHHHHhccchhhhhcCHHHHHh
Confidence 567777766444434 44556677888999885 78999984
No 54
>PRK04406 hypothetical protein; Provisional
Probab=23.03 E-value=3.3e+02 Score=20.73 Aligned_cols=33 Identities=15% Similarity=0.356 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHHHHHHHHhhhhhh
Q 025572 84 LQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAE 118 (250)
Q Consensus 84 lqEI~dNI~sRrnKIfllmEEVRRLRiQqrik~~e 118 (250)
.+++-+=|..-...|--|-.++|.|+ +|+++.+
T Consensus 27 Ie~LN~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~ 59 (75)
T PRK04406 27 IEELNDALSQQQLLITKMQDQMKYVV--GKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhc
Confidence 56666666666666767777788773 4666654
No 55
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.90 E-value=1.8e+02 Score=22.15 Aligned_cols=37 Identities=27% Similarity=0.635 Sum_probs=24.1
Q ss_pred hHHHHHhhh--HHHHHHHHHhhhhhhhHhHHHHHHHHHHHh
Q 025572 75 TVQDFAKME--LQEIHDNIRSRRNKIFLHMEEVRRLRIQQR 113 (250)
Q Consensus 75 tv~Dfa~Mq--lqEI~dNI~sRrnKIfllmEEVRRLRiQqr 113 (250)
+++|+.++. ++.=-..|++|+++ ++++++..|+-+.+
T Consensus 47 s~~eL~~LE~~Le~aL~~VR~rK~~--~l~~~i~~l~~ke~ 85 (100)
T PF01486_consen 47 SLKELQQLEQQLESALKRVRSRKDQ--LLMEQIEELKKKER 85 (100)
T ss_pred chHHHHHHHHhhhhhHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 455665554 55556678888888 56777777765443
No 56
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=22.89 E-value=53 Score=31.30 Aligned_cols=68 Identities=25% Similarity=0.403 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHH---HHhhccccccchhhhc-----cCCCchHHHHHHhhCccccccccCcceecccCcchhHHHHHH
Q 025572 148 LKVYYATCFSLIAG---VILFGGLLAPSLELKL-----GIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALM 219 (250)
Q Consensus 148 lk~yy~~~~~~v~~---ii~FGGLiAP~lElkL-----GlGgtsY~dFIrs~hLP~QLsqVDPIVASFsGGAVGVisalm 219 (250)
.|.|...-.+.++| |-+.|||.||.+.-=| |+|.+.-.-|+-++ +..-+++.+..|-+=+-+++.+
T Consensus 3 ~~R~~~ig~A~v~Gg~ligltgGLAAPliaaglgal~~g~G~~~~a~~Lg~~------ag~a~~i~~lfGa~Ga~ltg~~ 76 (345)
T PF05277_consen 3 WKRYLKIGLAAVGGGALIGLTGGLAAPLIAAGLGALFGGLGATAAAAFLGST------AGSAVVIGALFGAYGAGLTGKK 76 (345)
T ss_pred hhhhhhhhhhhhcchHHHHhccchhHHHHHHHHHhhccccchhHHHHHHHHh------hhhHHHHHhhhhhccccHHHHH
Confidence 34444444444443 3456899999987766 34554444466653 2233344444443334455555
Q ss_pred HH
Q 025572 220 IV 221 (250)
Q Consensus 220 vv 221 (250)
.-
T Consensus 77 m~ 78 (345)
T PF05277_consen 77 ME 78 (345)
T ss_pred HH
Confidence 53
No 57
>PRK14289 chaperone protein DnaJ; Provisional
Probab=22.82 E-value=32 Score=32.23 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=11.2
Q ss_pred hccccccccccee---ccccc
Q 025572 231 QKRCKYCLGTGIF---LNLSS 248 (250)
Q Consensus 231 kkrC~YC~GTGyL---~Cat~ 248 (250)
...|..|.|+|+. .|-.|
T Consensus 197 ~~~C~~C~G~G~~~~~~C~~C 217 (386)
T PRK14289 197 QSTCPTCNGEGKIIKKKCKKC 217 (386)
T ss_pred EEecCCCCccccccCcCCCCC
Confidence 5667777777765 45544
No 58
>PRK10767 chaperone protein DnaJ; Provisional
Probab=22.74 E-value=34 Score=31.75 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=11.2
Q ss_pred ccccccccccee---ccccc
Q 025572 232 KRCKYCLGTGIF---LNLSS 248 (250)
Q Consensus 232 krC~YC~GTGyL---~Cat~ 248 (250)
..|..|.|+|+. .|-.|
T Consensus 182 ~~C~~C~G~G~~~~~~C~~C 201 (371)
T PRK10767 182 QTCPTCHGRGKIIKDPCKKC 201 (371)
T ss_pred EeCCCCCCceeECCCCCCCC
Confidence 467777777765 46555
No 59
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=22.49 E-value=1.1e+02 Score=25.81 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=25.5
Q ss_pred CchhHHHHHhhhHHHHHHHHHhhhhhhhHhHHHHHHHHH
Q 025572 72 GPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRI 110 (250)
Q Consensus 72 gpetv~Dfa~MqlqEI~dNI~sRrnKIfllmEEVRRLRi 110 (250)
.--|+.++.+|+=+|+++.... .----||+|||.-
T Consensus 89 ~~~tLe~Llemsd~el~~~l~~----~g~~~EE~rRL~~ 123 (129)
T PF13543_consen 89 KVLTLEALLEMSDEELKEILNR----CGAREEECRRLCR 123 (129)
T ss_pred hhcCHHHHHhCCHHHHHHHHHH----hCCCHHHHHHHHH
Confidence 3457889999998888886554 2233799999863
No 60
>PRK14284 chaperone protein DnaJ; Provisional
Probab=22.49 E-value=38 Score=31.90 Aligned_cols=12 Identities=33% Similarity=0.722 Sum_probs=7.2
Q ss_pred ccccccccccee
Q 025572 232 KRCKYCLGTGIF 243 (250)
Q Consensus 232 krC~YC~GTGyL 243 (250)
..|..|+|+|+.
T Consensus 198 ~~C~~C~G~G~~ 209 (391)
T PRK14284 198 STCPECGGEGRV 209 (391)
T ss_pred EECCCCCCCCcc
Confidence 366666666654
No 61
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=22.08 E-value=31 Score=34.70 Aligned_cols=12 Identities=17% Similarity=0.348 Sum_probs=10.5
Q ss_pred HhhCcccccccc
Q 025572 189 QSVHLPMQLSQV 200 (250)
Q Consensus 189 rs~hLP~QLsqV 200 (250)
+.+|||-.+-.|
T Consensus 465 ~~~~lP~~i~gi 476 (525)
T PRK13376 465 YRIKLPPRIYGF 476 (525)
T ss_pred ccCCCCceeecc
Confidence 468999999999
No 62
>KOG2706 consensus Predicted membrane protein [Function unknown]
Probab=22.02 E-value=93 Score=30.99 Aligned_cols=93 Identities=28% Similarity=0.478 Sum_probs=47.0
Q ss_pred HHHHHHHHhhhhhhcCCCcccccCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHH------------Hhhccccccc
Q 025572 105 VRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGV------------ILFGGLLAPS 172 (250)
Q Consensus 105 VRRLRiQqrik~~e~g~~~ee~~~e~p~~~S~iPflp~lt~~tlk~yy~~~~~~v~~i------------i~FGGLiAP~ 172 (250)
-+||.-...-|.-+..+--.|+++|.-+|-- =||+||.+.+-.|+--+..+..|= ++| --+||+
T Consensus 126 WkrlqahdeqkkndqrdVHke~~ieikdYd~---EL~slsaaEi~~Y~f~f~Gl~TGPYYrYq~~~D~fem~f-Ks~aPT 201 (476)
T KOG2706|consen 126 WKRLQAHDEQKKNDQRDVHKEDEIEIKDYDT---ELPSLSAAEIFAYFFHFCGLFTGPYYRYQMLIDSFEMIF-KSWAPT 201 (476)
T ss_pred HHHhhhhhhhhccchhhccccCCcchhhhhh---ccccchHHHHHHHHHHHhhhccCcceehhhhhhhcccch-hccCch
Confidence 3454443333333333334566667666665 677888877665543332221110 011 137999
Q ss_pred hhhhccCCCchHHHH-----HH-hhCccccccccCcc
Q 025572 173 LELKLGIGGTSYADF-----IQ-SVHLPMQLSQVDPI 203 (250)
Q Consensus 173 lElkLGlGgtsY~dF-----Ir-s~hLP~QLsqVDPI 203 (250)
+|.||-. .-|.-| +. +--.|+..+--|.+
T Consensus 202 lEakle~--lkyalf~calflaTN~m~PLD~alSD~f 236 (476)
T KOG2706|consen 202 LEAKLEF--LKYALFSCALFLATNHMFPLDIALSDAF 236 (476)
T ss_pred HHHHHHH--HHHHHHHhHHHHhhccccchHHhhhhhh
Confidence 9998742 223322 11 22346666666655
No 63
>PRK14295 chaperone protein DnaJ; Provisional
Probab=21.93 E-value=35 Score=32.28 Aligned_cols=18 Identities=28% Similarity=0.626 Sum_probs=12.4
Q ss_pred hccccccccccee---ccccc
Q 025572 231 QKRCKYCLGTGIF---LNLSS 248 (250)
Q Consensus 231 kkrC~YC~GTGyL---~Cat~ 248 (250)
...|..|.|+|+. .|..|
T Consensus 205 ~~~C~~C~G~G~~~~~~C~~C 225 (389)
T PRK14295 205 SEPCPDCKGRGLIADDPCLVC 225 (389)
T ss_pred EEecCCCcceeEEeccCCCCC
Confidence 3478888888876 36555
No 64
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=21.23 E-value=83 Score=26.51 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=31.1
Q ss_pred HHHHhhhhhhcCCCcccccCC-CCCCCCCCCCCCccchhhHHHHHHHHHHHHHH
Q 025572 109 RIQQRIKNAELGISKEEQDNE-LPSFPSFIPFLPPLSAANLKVYYATCFSLIAG 161 (250)
Q Consensus 109 RiQqrik~~e~g~~~ee~~~e-~p~~~S~iPflp~lt~~tlk~yy~~~~~~v~~ 161 (250)
.|.++|+. |.+|+|=-+- ...|..+|=+-||++..|+-.+..-.+.+++|
T Consensus 65 ~Vr~~i~~---G~sd~eI~~~~v~RYG~~Vl~~Pp~~~~t~~LW~~P~~lll~g 115 (126)
T PRK10144 65 QVYSMVAE---GKSEVEIIGWMTERYGDFVRYNPPLTGQTLVLWALPVVLLLLM 115 (126)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHhcCCeEEecCCCCcchHHHHHHHHHHHHHH
Confidence 45556655 5444332222 45588888899999999987666554444433
No 65
>PRK14277 chaperone protein DnaJ; Provisional
Probab=21.05 E-value=38 Score=31.86 Aligned_cols=17 Identities=24% Similarity=0.538 Sum_probs=11.0
Q ss_pred ccccccccccee---ccccc
Q 025572 232 KRCKYCLGTGIF---LNLSS 248 (250)
Q Consensus 232 krC~YC~GTGyL---~Cat~ 248 (250)
..|..|+|+|+. .|-.|
T Consensus 199 ~~C~~C~G~G~~~~~~C~~C 218 (386)
T PRK14277 199 RTCDRCHGEGKIITDPCNKC 218 (386)
T ss_pred EECCCCCcceeeccCCCCCC
Confidence 477777777765 35544
No 66
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=21.01 E-value=3.1e+02 Score=24.87 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=24.6
Q ss_pred HHHHHHhhhhhhhHhHHHHHHHHHHHhhhhhh-cCCC
Q 025572 87 IHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAE-LGIS 122 (250)
Q Consensus 87 I~dNI~sRrnKIfllmEEVRRLRiQqrik~~e-~g~~ 122 (250)
.+..-..++++|-.++||+++|+=+---...+ +|+.
T Consensus 72 a~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~ 108 (230)
T PF10146_consen 72 AESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLE 108 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34444567888999999999888765444445 5654
No 67
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=20.95 E-value=1.8e+02 Score=21.20 Aligned_cols=32 Identities=16% Similarity=0.436 Sum_probs=24.4
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhh
Q 025572 76 VQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRI 114 (250)
Q Consensus 76 v~Dfa~MqlqEI~dNI~sRrnKIfllmEEVRRLRiQqri 114 (250)
..|+-+|..+|+++.|.+-|. |.=.||.|+..
T Consensus 3 ~~elr~ls~~eL~~~l~~lkk-------eL~~lR~~~~~ 34 (66)
T PRK00306 3 AKELRELSVEELNEKLLELKK-------ELFNLRFQKAT 34 (66)
T ss_pred HHHHhhCCHHHHHHHHHHHHH-------HHHHHHHHHHh
Confidence 568999999999998777665 45577877743
No 68
>PHA01745 hypothetical protein
Probab=20.65 E-value=85 Score=30.23 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=23.6
Q ss_pred CCCCCCCccchhhHHHHHHHHHHHHHHHHhhccccccch
Q 025572 135 SFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSL 173 (250)
Q Consensus 135 S~iPflp~lt~~tlk~yy~~~~~~v~~ii~FGGLiAP~l 173 (250)
+.||-+-......++.+.-++- -.+-.|.|||+++|++
T Consensus 102 ~vIPViH~Y~~e~l~~~ldfys-qy~d~iAfGG~Vp~s~ 139 (306)
T PHA01745 102 RIIPVIHLYPVREVDEAIDFYS-QYTDYIAFGGIVASSK 139 (306)
T ss_pred ceeeEEeecCHHHHHHHHHHHH-hhhhhhhccccccHHh
Confidence 5666665556666654432222 2234889999999983
No 69
>COG5346 Predicted membrane protein [Function unknown]
Probab=20.62 E-value=52 Score=28.45 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=15.8
Q ss_pred eecccCcchhHHHHHHHHh
Q 025572 204 VASFSGGAVGVISALMIVE 222 (250)
Q Consensus 204 VASFsGGAVGVisalmvvE 222 (250)
.||..||.||||.--+|+=
T Consensus 110 la~~~~Gtv~alAlaFv~~ 128 (136)
T COG5346 110 LASLAGGTVFALALAFVIG 128 (136)
T ss_pred HHHHccchHHHHHHHHHHh
Confidence 4788999999998887763
No 70
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=20.44 E-value=1.7e+02 Score=21.92 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=24.0
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhh
Q 025572 76 VQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRI 114 (250)
Q Consensus 76 v~Dfa~MqlqEI~dNI~sRrnKIfllmEEVRRLRiQqri 114 (250)
.+|+-+|..+|+++.|..-|... =.||.|+..
T Consensus 6 ~~elr~ls~~eL~~~l~elk~el-------f~LRfq~at 37 (67)
T CHL00154 6 ITDIIDLTDSEISEEIIKTKKEL-------FDLRLKKAT 37 (67)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHH-------HHHHHHHHh
Confidence 57888999999999777665544 467887655
Done!