Query 025572
Match_columns 250
No_of_seqs 39 out of 41
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 13:03:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lcz_A YCZA, inhibitor of trap 65.8 2.2 7.4E-05 29.6 1.2 21 228-248 6-29 (53)
2 1exk_A DNAJ protein; extended 63.3 2.1 7.1E-05 29.7 0.7 19 230-248 49-70 (79)
3 1erd_A Pheromone ER-2; NMR {Eu 56.5 1.7 5.8E-05 29.4 -0.7 18 229-246 12-29 (40)
4 2ctt_A DNAJ homolog subfamily 43.7 6.4 0.00022 29.0 0.6 18 231-248 67-87 (104)
5 2kz3_A Putative uncharacterize 39.8 15 0.00053 27.2 2.2 33 73-112 25-57 (83)
6 2ctt_A DNAJ homolog subfamily 39.5 7.5 0.00026 28.6 0.4 12 232-243 46-57 (104)
7 1nlt_A Protein YDJ1, mitochond 34.7 8.7 0.0003 32.6 0.2 21 228-248 77-102 (248)
8 2bx9_A Anti-trap, AT, tryptoph 33.3 12 0.00043 25.7 0.7 13 231-243 23-35 (53)
9 1btq_A BAND 3 anion transport 31.9 15 0.00052 22.7 0.9 18 153-170 8-25 (26)
10 1kx2_A Mono-heme C-type cytoch 30.9 14 0.00046 25.0 0.6 10 232-241 12-21 (81)
11 2fiy_A Protein FDHE homolog; F 28.8 24 0.00082 31.5 2.0 70 179-249 128-215 (309)
12 3ph2_B Cytochrome C6; photosyn 28.7 8.8 0.0003 25.2 -0.7 10 232-241 13-22 (86)
13 3cu4_A Cytochrome C family pro 28.3 14 0.00049 24.6 0.3 10 232-241 14-23 (85)
14 3ctk_A RIP;, rRNA N-glycosidas 25.8 21 0.00073 30.6 1.1 21 171-192 2-22 (248)
15 2bx2_L Ribonuclease E, RNAse E 25.0 6.9 0.00024 37.6 -2.3 62 178-245 345-422 (517)
16 2jwa_A Receptor tyrosine-prote 24.3 13 0.00045 25.4 -0.4 12 204-215 11-22 (44)
17 4b4t_K 26S protease regulatory 23.7 81 0.0028 29.0 4.5 40 70-109 51-90 (428)
18 3dmi_A Cytochrome C6; electron 23.2 12 0.00043 24.7 -0.7 10 232-241 12-21 (88)
19 1gks_A Cytochrome C551; haloph 23.2 14 0.00049 24.7 -0.4 11 231-241 11-21 (78)
20 2exv_A Cytochrome C-551; alpha 22.7 25 0.00085 23.0 0.7 10 231-240 9-18 (82)
21 1odh_A MGCM1; transcription fa 21.8 29 0.00099 29.8 1.1 15 226-240 105-119 (174)
22 3mqm_A Probable histone-lysine 21.5 24 0.00082 26.7 0.5 80 102-193 2-82 (126)
23 1bnx_A Protein (BAND 3); human 21.3 97 0.0033 20.0 3.3 16 154-169 16-31 (34)
24 1cyi_A Cytochrome C6, cytochro 21.0 15 0.0005 24.6 -0.7 10 232-241 12-21 (90)
25 2j7a_C Cytochrome C quinol deh 21.0 22 0.00074 27.8 0.2 11 230-240 39-49 (159)
26 1cc5_A Cytochrome C5; electron 20.5 17 0.00059 25.0 -0.5 11 231-241 12-22 (83)
27 3h3g_B Parathyroid hormone-rel 20.2 45 0.0015 20.6 1.4 15 91-105 4-20 (24)
28 2hf1_A Tetraacyldisaccharide-1 20.2 36 0.0012 24.5 1.1 19 230-248 7-32 (68)
No 1
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=65.82 E-value=2.2 Score=29.56 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=13.5
Q ss_pred hhhhccccccccccee---ccccc
Q 025572 228 QQEQKRCKYCLGTGIF---LNLSS 248 (250)
Q Consensus 228 qQekkrC~YC~GTGyL---~Cat~ 248 (250)
||-...|..|+|+|.. +|.+|
T Consensus 6 qq~~~~C~~C~GsG~~i~~~C~~C 29 (53)
T 3lcz_A 6 DDLETTCPNCNGSGREEPEPCPKC 29 (53)
T ss_dssp HHHEEECTTTTTSCEETTEECTTT
T ss_pred CceeccCcCCcccccCCCCcCCCC
Confidence 4455677777777773 46555
No 2
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=63.25 E-value=2.1 Score=29.72 Aligned_cols=19 Identities=26% Similarity=0.495 Sum_probs=13.0
Q ss_pred hhccccccccccee---ccccc
Q 025572 230 EQKRCKYCLGTGIF---LNLSS 248 (250)
Q Consensus 230 ekkrC~YC~GTGyL---~Cat~ 248 (250)
....|..|+|+|+. +|.+|
T Consensus 49 ~~~~C~~C~G~G~~~~~~C~~C 70 (79)
T 1exk_A 49 VQQTCPHCQGRGTLIKDPCNKC 70 (79)
T ss_dssp EEEECTTTTTSSEECSSBCGGG
T ss_pred EeeECcCCCCccEECCCcCCCC
Confidence 34567777777777 66665
No 3
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=56.47 E-value=1.7 Score=29.44 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=16.0
Q ss_pred hhhcccccccccceeccc
Q 025572 229 QEQKRCKYCLGTGIFLNL 246 (250)
Q Consensus 229 QekkrC~YC~GTGyL~Ca 246 (250)
-|+..|-||.|+=|..|.
T Consensus 12 cehtmcgycqgplymtci 29 (40)
T 1erd_A 12 CEHTMCGYCQGPLYMTCI 29 (40)
T ss_dssp TCGGGGGGSCHHHHHHHH
T ss_pred ccccccccccCCeeEEEE
Confidence 488999999999999884
No 4
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.68 E-value=6.4 Score=28.99 Aligned_cols=18 Identities=22% Similarity=0.554 Sum_probs=10.8
Q ss_pred hccccccccccee---ccccc
Q 025572 231 QKRCKYCLGTGIF---LNLSS 248 (250)
Q Consensus 231 kkrC~YC~GTGyL---~Cat~ 248 (250)
...|..|+|+|.. +|..|
T Consensus 67 ~~~C~~C~G~G~~i~~~C~~C 87 (104)
T 2ctt_A 67 RSTCRRCGGRGSIIISPCVVC 87 (104)
T ss_dssp EEECSSSSSSSEECSSCCSSS
T ss_pred EEECCcCCCcceECCCcCCCC
Confidence 3456666666665 46555
No 5
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=39.80 E-value=15 Score=27.23 Aligned_cols=33 Identities=27% Similarity=0.289 Sum_probs=25.3
Q ss_pred chhHHHHHhhhHHHHHHHHHhhhhhhhHhHHHHHHHHHHH
Q 025572 73 PETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQ 112 (250)
Q Consensus 73 petv~Dfa~MqlqEI~dNI~sRrnKIfllmEEVRRLRiQq 112 (250)
=.||+||...+.+|+.+ +--|-+++|+.+|-..
T Consensus 25 I~Tv~Dfl~~d~~eL~~-------~~~ls~~~v~~l~r~l 57 (83)
T 2kz3_A 25 IKTVVDLVSADLEEVAQ-------KCGLSYKALVALRRVL 57 (83)
T ss_dssp CCCHHHHTTSCHHHHHH-------HHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHhCCHHHHHH-------HhCCCHHHHHHHHHHH
Confidence 36999999999999987 3345678888776443
No 6
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.49 E-value=7.5 Score=28.62 Aligned_cols=12 Identities=42% Similarity=1.176 Sum_probs=6.7
Q ss_pred ccccccccccee
Q 025572 232 KRCKYCLGTGIF 243 (250)
Q Consensus 232 krC~YC~GTGyL 243 (250)
+.|..|+|+|+.
T Consensus 46 ~~C~~C~G~G~~ 57 (104)
T 2ctt_A 46 QHCHYCGGSGME 57 (104)
T ss_dssp EECSSSSSSCEE
T ss_pred ccCCCCCCCEEE
Confidence 456666666543
No 7
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=34.66 E-value=8.7 Score=32.60 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=12.3
Q ss_pred hhhhcccccccccce-----eccccc
Q 025572 228 QQEQKRCKYCLGTGI-----FLNLSS 248 (250)
Q Consensus 228 qQekkrC~YC~GTGy-----L~Cat~ 248 (250)
+|....|..|+|+|+ -+|.+|
T Consensus 77 ~~~~~~C~~C~G~G~~i~~~~~C~~C 102 (248)
T 1nlt_A 77 QRFQTECDVCHGTGDIIDPKDRCKSC 102 (248)
T ss_dssp EEEECSCTTCSSSSSCCCTTSBCSSS
T ss_pred EEEEEcCCCCCCcCEEeccCCCCccc
Confidence 345556777777663 336655
No 8
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=33.28 E-value=12 Score=25.68 Aligned_cols=13 Identities=31% Similarity=0.864 Sum_probs=10.3
Q ss_pred hccccccccccee
Q 025572 231 QKRCKYCLGTGIF 243 (250)
Q Consensus 231 kkrC~YC~GTGyL 243 (250)
++.|..|+|+|+.
T Consensus 23 ~~~C~~C~G~G~v 35 (53)
T 2bx9_A 23 GTPCPACSGKGVI 35 (53)
T ss_dssp TEECTTTTTSSEE
T ss_pred CCCCccCCCCccE
Confidence 3679999998875
No 9
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=31.89 E-value=15 Score=22.67 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhccccc
Q 025572 153 ATCFSLIAGVILFGGLLA 170 (250)
Q Consensus 153 ~~~~~~v~~ii~FGGLiA 170 (250)
-.||+.++-.|.||||+.
T Consensus 8 FlyFa~l~paIaFGgLl~ 25 (26)
T 1btq_A 8 FIYFAALSPAITFGXXXX 25 (26)
T ss_pred HHHHHHHcchhccccccC
Confidence 356777788999999863
No 10
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=30.89 E-value=14 Score=25.02 Aligned_cols=10 Identities=40% Similarity=0.969 Sum_probs=8.4
Q ss_pred cccccccccc
Q 025572 232 KRCKYCLGTG 241 (250)
Q Consensus 232 krC~YC~GTG 241 (250)
+.|.-|||.+
T Consensus 12 ~~Ca~CHg~~ 21 (81)
T 1kx2_A 12 KACTVCHSMG 21 (81)
T ss_dssp HSTTSSTTTT
T ss_pred HHHHHHcCCC
Confidence 5799999965
No 11
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=28.82 E-value=24 Score=31.54 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=45.2
Q ss_pred CCCchHHHHHHhhCccccccccCcceecccCcchhHHHHHHHHhhhh--h-hhhhhcccccccc-------------cc-
Q 025572 179 IGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNN--V-KQQEQKRCKYCLG-------------TG- 241 (250)
Q Consensus 179 lGgtsY~dFIrs~hLP~QLsqVDPIVASFsGGAVGVisalmvvE~nN--v-kqQekkrC~YC~G-------------TG- 241 (250)
.+...-+.++..+ |--+.++|++-.+-|...|..++-+.+.-.+.- . ....+..|+-|-+ .|
T Consensus 128 ~~~~~l~~~a~~l-L~~~~~~~~~~~~~fi~aaLq~~~~~~a~~l~~~~~~~~~~~~~CPvCGs~P~~s~l~~~g~~~G~ 206 (309)
T 2fiy_A 128 AEEGQRKAWAIAL-LSGQFDLLPAALVPFLGAALQVAWSHWLLGLEEGAVVETESRTLCPACGSPPMAGMIRQGGKETGL 206 (309)
T ss_dssp CCHHHHHHHHHHH-HTTCGGGSCGGGHHHHHHHHHHHHHHHHHTCCTTCSCCCTTCSSCTTTCCCEEEEEEEC----CCE
T ss_pred CCHHHHHHHHHHH-HcCCcccCchHHHHHHHHHHHHHHHHHHHhCCccccCccccCCCCCCCCCcCceeEEeecCCCCCc
Confidence 3445566666654 555667777766777777777776666655431 1 1156889999953 23
Q ss_pred -eecccccc
Q 025572 242 -IFLNLSSI 249 (250)
Q Consensus 242 -yL~Cat~~ 249 (250)
||.|..|-
T Consensus 207 R~l~Cs~C~ 215 (309)
T 2fiy_A 207 RYLSCSLCA 215 (309)
T ss_dssp EEEEETTTC
T ss_pred EEEEeCCCC
Confidence 89998884
No 12
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=28.73 E-value=8.8 Score=25.22 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=7.9
Q ss_pred cccccccccc
Q 025572 232 KRCKYCLGTG 241 (250)
Q Consensus 232 krC~YC~GTG 241 (250)
+.|..|||.+
T Consensus 13 ~~C~~CHg~~ 22 (86)
T 3ph2_B 13 ANCAACHAGG 22 (86)
T ss_dssp HHTHHHHCSS
T ss_pred HHhHHhCCCC
Confidence 4699999953
No 13
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=28.35 E-value=14 Score=24.60 Aligned_cols=10 Identities=30% Similarity=0.747 Sum_probs=8.0
Q ss_pred cccccccccc
Q 025572 232 KRCKYCLGTG 241 (250)
Q Consensus 232 krC~YC~GTG 241 (250)
+.|..|||.+
T Consensus 14 ~~Ca~CHg~~ 23 (85)
T 3cu4_A 14 THCAGCHPQG 23 (85)
T ss_dssp HHTTTTSGGG
T ss_pred HHhHHhCCCC
Confidence 5799999853
No 14
>3ctk_A RIP;, rRNA N-glycosidase; alpha-beta protein, hydrolase; 1.80A {Bougainvillea spectabilis} SCOP: d.165.1.1
Probab=25.84 E-value=21 Score=30.62 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=16.4
Q ss_pred cchhhhccCCCchHHHHHHhhC
Q 025572 171 PSLELKLGIGGTSYADFIQSVH 192 (250)
Q Consensus 171 P~lElkLGlGgtsY~dFIrs~h 192 (250)
|++...++ |+++|.+||.++.
T Consensus 2 ~tv~f~~~-~a~~Y~~Fi~~LR 22 (248)
T 3ctk_A 2 NTVSFNLG-EAYEYPTFIQDLR 22 (248)
T ss_dssp CEEEEETT-CGGGHHHHHHHHH
T ss_pred CeEEEecC-CcchHHHHHHHHH
Confidence 56666776 7789999999874
No 15
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=25.03 E-value=6.9 Score=37.58 Aligned_cols=62 Identities=23% Similarity=0.405 Sum_probs=37.6
Q ss_pred cCCCchHHHHHHhhCccc----------cccccCcceecccCcchhHHHHHHHHhhh------hhhhhhhcccccccccc
Q 025572 178 GIGGTSYADFIQSVHLPM----------QLSQVDPIVASFSGGAVGVISALMIVEVN------NVKQQEQKRCKYCLGTG 241 (250)
Q Consensus 178 GlGgtsY~dFIrs~hLP~----------QLsqVDPIVASFsGGAVGVisalmvvE~n------NvkqQekkrC~YC~GTG 241 (250)
+|||-=--|||..-. +. +.-.=|+.=.. |+=+|.|=++|+- ++.+.-..-|.+|+|+|
T Consensus 345 nlgGiIvIDFIdM~~-~~~r~~v~~~l~~al~~Dr~k~~-----v~~~S~lGLvEmTRkR~r~sL~e~~~~~Cp~C~G~G 418 (517)
T 2bx2_L 345 DLGGLIVIDFIDMTP-VRHQRAVENRLREAVRQDRARIQ-----ISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTG 418 (517)
T ss_dssp TCCEEEEEECCCCSS-HHHHHHHHHHHHHHTTTCSSCEE-----EEEECTTSEEEEEECCCSCCHHHHHCCCCSSSSSSS
T ss_pred CCCcEEEEECCCCCC-HHHHHHHHHHHHHHHhcCCCCcE-----EeccCCCceEEEeecCcCcChhhhhcCcCCCcCCce
Confidence 677776778875311 11 11122554333 3336777788985 45555567899999999
Q ss_pred eecc
Q 025572 242 IFLN 245 (250)
Q Consensus 242 yL~C 245 (250)
+..-
T Consensus 419 ~v~s 422 (517)
T 2bx2_L 419 TVRD 422 (517)
T ss_dssp CCCC
T ss_pred eECC
Confidence 8753
No 16
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=24.27 E-value=13 Score=25.42 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=8.8
Q ss_pred eecccCcchhHH
Q 025572 204 VASFSGGAVGVI 215 (250)
Q Consensus 204 VASFsGGAVGVi 215 (250)
+.|..||+||++
T Consensus 11 ~~~Ia~~vVGvl 22 (44)
T 2jwa_A 11 LTSIISAVVGIL 22 (44)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccchHHHHHHHH
Confidence 356778888866
No 17
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.65 E-value=81 Score=29.01 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=32.0
Q ss_pred eeCchhHHHHHhhhHHHHHHHHHhhhhhhhHhHHHHHHHH
Q 025572 70 IEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLR 109 (250)
Q Consensus 70 iegpetv~Dfa~MqlqEI~dNI~sRrnKIfllmEEVRRLR 109 (250)
+.--+...|+.++|-+.|+++++.-+.++.-+-||+++|+
T Consensus 51 lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 51 LKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445566789999999999999888888888888888775
No 18
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=23.22 E-value=12 Score=24.66 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=7.8
Q ss_pred cccccccccc
Q 025572 232 KRCKYCLGTG 241 (250)
Q Consensus 232 krC~YC~GTG 241 (250)
+.|..|||.+
T Consensus 12 ~~C~~CHg~~ 21 (88)
T 3dmi_A 12 ANCAACHAGG 21 (88)
T ss_dssp HHTHHHHGGG
T ss_pred HHHHHhCCCC
Confidence 4599999854
No 19
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=23.15 E-value=14 Score=24.73 Aligned_cols=11 Identities=27% Similarity=0.751 Sum_probs=8.8
Q ss_pred hcccccccccc
Q 025572 231 QKRCKYCLGTG 241 (250)
Q Consensus 231 kkrC~YC~GTG 241 (250)
+..|..|||.+
T Consensus 11 ~~~C~~CHg~~ 21 (78)
T 1gks_A 11 APTCSSCHDRG 21 (78)
T ss_dssp SSCSHHHHTTT
T ss_pred ccchhhhCCCC
Confidence 45899999964
No 20
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=22.68 E-value=25 Score=23.03 Aligned_cols=10 Identities=30% Similarity=0.667 Sum_probs=8.1
Q ss_pred hccccccccc
Q 025572 231 QKRCKYCLGT 240 (250)
Q Consensus 231 kkrC~YC~GT 240 (250)
++.|.-|||.
T Consensus 9 ~~~C~~CHg~ 18 (82)
T 2exv_A 9 NKGCVACHAI 18 (82)
T ss_dssp HTTGGGTCCS
T ss_pred hCCchhhcCC
Confidence 4579999985
No 21
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=21.78 E-value=29 Score=29.78 Aligned_cols=15 Identities=33% Similarity=0.769 Sum_probs=11.9
Q ss_pred hhhhhhccccccccc
Q 025572 226 VKQQEQKRCKYCLGT 240 (250)
Q Consensus 226 vkqQekkrC~YC~GT 240 (250)
=++|+.|.|.+|+|.
T Consensus 105 R~KQq~k~CpnC~g~ 119 (174)
T 1odh_A 105 RQKQQRKSCPNCNGP 119 (174)
T ss_dssp HHHHHHSBCSSSCCB
T ss_pred HHHhhcCCCCCCCcc
Confidence 367888999999863
No 22
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=21.52 E-value=24 Score=26.71 Aligned_cols=80 Identities=20% Similarity=0.140 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhhhhhcCCCcccccCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhccccccchhhhccCCC
Q 025572 102 MEEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGG 181 (250)
Q Consensus 102 mEEVRRLRiQqrik~~e~g~~~ee~~~e~p~~~S~iPflp~lt~~tlk~yy~~~~~~v~~ii~FGGLiAP~lElkLGlGg 181 (250)
||--|.-|+|++++..-..+..-.++ -.-+-+-||+-|.+.+.+-+||-.. --..==-+++-||--|.
T Consensus 2 ~El~k~~~l~~~~~~i~~~l~~~~d~---~g~~~s~~F~~pv~~~~~pdY~~iI---------k~PmdL~tI~~kl~~~~ 69 (126)
T 3mqm_A 2 MEVARAARLAQIFKEICDGIISYKDS---SRQALAAPLLNLPPKKKNADYYEKI---------SDPLDLITIEKQILTGY 69 (126)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCBCT---TCCBTTGGGSSCCCGGGCTTHHHHC---------SSCCCHHHHHHHHHHTC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhCc---CCCChhHHhcCCCCcccCCCHHHHc---------CCCCCHHHHHHHHHcCC
Confidence 45566667777776653222111111 1256678999999988888888741 11111112344443332
Q ss_pred -chHHHHHHhhCc
Q 025572 182 -TSYADFIQSVHL 193 (250)
Q Consensus 182 -tsY~dFIrs~hL 193 (250)
.+..+|++-++|
T Consensus 70 Y~s~~~f~~D~~l 82 (126)
T 3mqm_A 70 YKTVEAFDADMLK 82 (126)
T ss_dssp CCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 366778777665
No 23
>1bnx_A Protein (BAND 3); human erythrocyte anion transporter, transmembrane, synthetic peptide, electron transport; NMR {Synthetic} SCOP: j.35.1.1
Probab=21.31 E-value=97 Score=19.97 Aligned_cols=16 Identities=44% Similarity=0.814 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhcccc
Q 025572 154 TCFSLIAGVILFGGLL 169 (250)
Q Consensus 154 ~~~~~v~~ii~FGGLi 169 (250)
.+|+.++-.|.|||++
T Consensus 16 iyFa~l~PaIaFg~ll 31 (34)
T 1bnx_A 16 IYFAALSPAITFGGLL 31 (34)
T ss_dssp HHHHHHHHHHHSSCSS
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455567889999986
No 24
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=21.04 E-value=15 Score=24.59 Aligned_cols=10 Identities=30% Similarity=0.657 Sum_probs=7.8
Q ss_pred cccccccccc
Q 025572 232 KRCKYCLGTG 241 (250)
Q Consensus 232 krC~YC~GTG 241 (250)
+.|.-|||.+
T Consensus 12 ~~C~~CHg~~ 21 (90)
T 1cyi_A 12 GNCAACHMGG 21 (90)
T ss_dssp HHTHHHHGGG
T ss_pred HHHHHhCCCC
Confidence 4699999853
No 25
>2j7a_C Cytochrome C quinol dehydrogenase NRFH; cytochrome C nitrite reductase, NRFA, NAPC/NIRT family, membrane complex, oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio vulgaris} PDB: 2vr0_C*
Probab=21.03 E-value=22 Score=27.81 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=8.3
Q ss_pred hhccccccccc
Q 025572 230 EQKRCKYCLGT 240 (250)
Q Consensus 230 ekkrC~YC~GT 240 (250)
+...|..||..
T Consensus 39 ~~~~C~~CH~~ 49 (159)
T 2j7a_C 39 QRPFCTSCHIM 49 (159)
T ss_dssp SHHHHTTSGGG
T ss_pred CCchHHhcCCC
Confidence 44689999974
No 26
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=20.49 E-value=17 Score=25.02 Aligned_cols=11 Identities=55% Similarity=1.108 Sum_probs=8.9
Q ss_pred hcccccccccc
Q 025572 231 QKRCKYCLGTG 241 (250)
Q Consensus 231 kkrC~YC~GTG 241 (250)
.+.|.-|||.|
T Consensus 12 ~~~Ca~CHg~~ 22 (83)
T 1cc5_A 12 AKYCNACHGTG 22 (83)
T ss_dssp HHTTHHHHTTT
T ss_pred HHHHHHHCcCC
Confidence 35799999975
No 27
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=20.19 E-value=45 Score=20.59 Aligned_cols=15 Identities=33% Similarity=0.685 Sum_probs=9.2
Q ss_pred HHhhhhhhhH--hHHHH
Q 025572 91 IRSRRNKIFL--HMEEV 105 (250)
Q Consensus 91 I~sRrnKIfl--lmEEV 105 (250)
|+..|.+||| +||||
T Consensus 4 ~Q~~rRr~wL~~ll~~v 20 (24)
T 3h3g_B 4 IQDLRRRFFLHHLIAEI 20 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 4445666776 57776
No 28
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=20.17 E-value=36 Score=24.48 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=14.6
Q ss_pred hhccccccccc-------ceeccccc
Q 025572 230 EQKRCKYCLGT-------GIFLNLSS 248 (250)
Q Consensus 230 ekkrC~YC~GT-------GyL~Cat~ 248 (250)
+--+|..|+|+ |.|.|..|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~c 32 (68)
T 2hf1_A 7 EILVCPLCKGPLVFDKSKDELICKGD 32 (68)
T ss_dssp EECBCTTTCCBCEEETTTTEEEETTT
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCC
Confidence 44579999884 88988766
Done!