BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025573
MGTNPYQSHLVSASTHLHRSSILPLHGLKQVLPYFRASKLRLGANRNGPLWNAKGNICCA
MNMAAGQSGDPEKLNLDQLVNRVRKLWDNSPQPVKSFPWNRALENFIQLILDLFMAVVKY
LSVPLLAVSSLSEMSYCAHEKKLFLVPVPLLIGMAISDLLRETILDLSPLLKDAEVPWHL
IAIGIFFTVIKLPGPYYPYWGRLFIPHFANGALWRTLWFAFLWYRKPKKASEATPSNDSV
NTGLSEPNKL

High Scoring Gene Products

Symbol, full name Information P value
emb1273
AT1G49510 		protein from Arabidopsis thaliana 1.2e-60

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025573
        (250 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2010292 - symbol:emb1273 "AT1G49510" species:3...   621  1.2e-60   1


>TAIR|locus:2010292 [details] [associations]
            symbol:emb1273 "AT1G49510" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0009793 "embryo development ending
            in seed dormancy" evidence=NAS] EMBL:CP002684
            GenomeReviews:CT485782_GR EMBL:AC007504 EMBL:BT005857 EMBL:AK227372
            IPI:IPI00533988 PIR:H96531 RefSeq:NP_175374.2 UniGene:At.23203
            UniGene:At.67121 PRIDE:Q9XIB8 EnsemblPlants:AT1G49510.1
            GeneID:841375 KEGG:ath:AT1G49510 TAIR:At1g49510 eggNOG:NOG311247
            HOGENOM:HOG000093086 InParanoid:Q9XIB8 OMA:SEMSYCA PhylomeDB:Q9XIB8
            ProtClustDB:CLSN2680431 Genevestigator:Q9XIB8 Uniprot:Q9XIB8
        Length = 240

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 122/237 (51%), Positives = 157/237 (66%)

Query:     8 SHLVSASTHLHRSSILPLHGLKQ-VLPYFRASKLRLGANRNGPLWNAKGNICCAMNMAAG 66
             SHL  +S+    S  L LH   Q  L Y + +K     + N    + +  +C A++M +G
Sbjct:     4 SHLFLSSSP-QSSLALRLHSTTQFTLSYSKNNKDCSFQSANEAKVSKRSLLCRAIHMESG 62

Query:    67 QSGD-PEKLNLDQLVNRVRKLWDNSPQPVKSFPWNRALENFIQLILDLFMAVVKYXXXXX 125
              SG+ P+KLN D L+ R + +WDNSPQPVK FPWNRA  NFIQL+LDL ++VVK+     
Sbjct:    63 HSGEQPKKLNFDNLLRRTKHVWDNSPQPVKEFPWNRAFGNFIQLVLDLAISVVKFLFVPI 122

Query:   126 XXXXXXXEMSYCAHEKKLFLVPVPLLIGMAISDLLRETILDLSPLLKDAEVPWHLIAIGI 185
                    EMSYCAHE+KL LVP PL+IGM ++ +L+ET L +SP LK+AEVPWHLIA+ +
Sbjct:   123 LAVSSISEMSYCAHERKLALVPFPLVIGMVVAGVLQETALKISPRLKEAEVPWHLIAMMM 182

Query:   186 FFTVIKLPGPYYPYWGRLFIPHFANGALWRTLWFAFLWYRKPKKASEATPSNDSVNT 242
             FFT+IKLPGPYYPYWGRL +PHFANG L R LW  F WY+K +  S     N S+ T
Sbjct:   183 FFTLIKLPGPYYPYWGRLLVPHFANGVLLRALWSMFFWYKKTRNTSGNPLQNHSLET 239


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.139   0.449    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      250       238   0.00091  113 3  11 22  0.39    33
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  204 KB (2113 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.85u 0.18s 19.03t   Elapsed:  00:00:01
  Total cpu time:  18.85u 0.18s 19.03t   Elapsed:  00:00:01
  Start:  Fri May 10 15:44:41 2013   End:  Fri May 10 15:44:42 2013

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