Query 025573
Match_columns 250
No_of_seqs 17 out of 19
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 07:13:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4544 Uncharacterized conser 49.8 26 0.00055 30.6 4.0 69 110-179 43-123 (144)
2 cd00043 CYCLIN Cyclin box fold 47.8 58 0.0013 21.9 4.9 28 175-204 41-68 (88)
3 PF12249 AftA_C: Arabinofurano 46.4 7.3 0.00016 34.8 0.3 17 195-211 64-81 (178)
4 cd03409 Chelatase_Class_II Cla 40.2 24 0.00053 25.8 2.2 39 140-178 59-98 (101)
5 COG4591 LolE ABC-type transpor 38.5 1.1E+02 0.0025 29.8 7.0 27 83-109 237-264 (408)
6 PF03818 MadM: Malonate/sodium 28.0 69 0.0015 24.4 2.9 50 146-203 9-58 (60)
7 cd05135 RasGAP_RASAL Ras GTPas 26.3 3E+02 0.0065 26.3 7.5 74 102-199 143-216 (333)
8 PTZ00443 Thioredoxin domain-co 23.9 4.1E+02 0.0088 23.8 7.5 53 90-158 147-199 (224)
9 PF05361 PP1_inhibitor: PKC-ac 21.5 1.7E+02 0.0036 25.6 4.4 49 63-120 62-120 (144)
10 PF03745 DUF309: Domain of unk 19.6 2.1E+02 0.0046 20.8 4.1 29 83-120 22-50 (62)
No 1
>KOG4544 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.82 E-value=26 Score=30.60 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=42.4
Q ss_pred HHHHHH--HHHHHHHHHHHHhhhhchhhhhhhccceeeeeh-hHHHHHH---------HHHHHHHHHHhhCcccccCCCc
Q 025573 110 ILDLFM--AVVKYLSVPLLAVSSLSEMSYCAHEKKLFLVPV-PLLIGMA---------ISDLLRETILDLSPLLKDAEVP 177 (250)
Q Consensus 110 lL~L~~--~vvKwl~VpvfavSsLSEmsYc~~~nKel~IPi-gLl~G~~---------~Ag~LKETalELs~~lee~~~p 177 (250)
-++++. +-++|..--...+.-++-.+|-.+.|+..+||| ||..+|- --.-++|||.+|-+-. |.-+|
T Consensus 43 A~~Ia~~RE~f~w~~~f~~~avv~laa~~~~~Kr~~~liPIvPL~f~~gYqyd~ayGd~l~ri~etA~~lLete-~ell~ 121 (144)
T KOG4544|consen 43 AFKIAEEREKFNWIACFGSLAVVLLAASSFHHKRLLHLIPIVPLAFFIGYQYDFAYGDQLKRISETATQLLETE-DELLP 121 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchheechhhHhhhhheeecccchHHHHHHHHHHHHHhCH-HHhcc
Confidence 344443 456676544433344444567788888888886 4544442 1235789999998776 44467
Q ss_pred hH
Q 025573 178 WH 179 (250)
Q Consensus 178 wh 179 (250)
|+
T Consensus 122 lP 123 (144)
T KOG4544|consen 122 LP 123 (144)
T ss_pred CC
Confidence 76
No 2
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=47.78 E-value=58 Score=21.86 Aligned_cols=28 Identities=18% Similarity=0.263 Sum_probs=23.5
Q ss_pred CCchHHHHHHHHHHHhhcCCCCCCCccccc
Q 025573 175 EVPWHLIAIGIFFTVIKLPGPYYPYWGRLF 204 (250)
Q Consensus 175 ~~pwhLl~i~~fF~liK~~gpy~p~wgrif 204 (250)
+.+.++++++|+|...|+.+. |.|-+-+
T Consensus 41 ~~~~~~ia~a~l~lA~k~~~~--~~~~~~~ 68 (88)
T cd00043 41 GRSPSLVAAAALYLAAKVEEI--PPWLKDL 68 (88)
T ss_pred cCChHHHHHHHHHHHHHHcCC--CCCHHHH
Confidence 688999999999999999998 6555543
No 3
>PF12249 AftA_C: Arabinofuranosyltransferase A C terminal; InterPro: IPR020959 The arabinofuranosyltransferase enzyme AftA is involved in cell wall arabinan biosynthesis in bacteria []. It catalyses the addition of the first key arabinofuranosyl residue from the sugar donor beta-D-arabinofuranosyl-1-monophosphoryldecaprenol to the galactan domain of the cell wall, thus priming the galactan for further elaboration by the arabinofuranosyltransferases. As this enzyme is important for cell growth and is found in some important pathogens, such as Mycobacterium tuberculosis, it represents a potential target for the devlopment of new antibacterial drugs. This entry represents the C-terminal domain of AftA.; GO: 0016757 transferase activity, transferring glycosyl groups, 0044038 cell wall macromolecule biosynthetic process, 0005886 plasma membrane, 0016021 integral to membrane
Probab=46.42 E-value=7.3 Score=34.82 Aligned_cols=17 Identities=53% Similarity=1.370 Sum_probs=14.9
Q ss_pred CCCCCcc-cccceecchh
Q 025573 195 PYYPYWG-RLFIPHFANG 211 (250)
Q Consensus 195 py~p~wg-riflpHfANG 211 (250)
.|||||| |.+-+|-||=
T Consensus 64 syyPY~gFQalTsHYANP 81 (178)
T PF12249_consen 64 SYYPYWGFQALTSHYANP 81 (178)
T ss_pred EecccccccccchhhcCc
Confidence 4899999 7899999993
No 4
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=40.15 E-value=24 Score=25.77 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=33.4
Q ss_pred ccceeeeehhHHHHHHHH-HHHHHHHHhhCcccccCCCch
Q 025573 140 EKKLFLVPVPLLIGMAIS-DLLRETILDLSPLLKDAEVPW 178 (250)
Q Consensus 140 ~nKel~IPigLl~G~~~A-g~LKETalELs~~lee~~~pw 178 (250)
.++..++|+.+.-|.-+. |+..|.....-..+|..+.+|
T Consensus 59 ~~~vvvvPl~~~~g~h~~~di~~~~~~~~~~~~~~~g~~~ 98 (101)
T cd03409 59 YQRVVIVPLAPVSGDEVFYDIDSEIGLVRKQVGEPLGEKL 98 (101)
T ss_pred CCeEEEEeCccccChhhHHHHHHHHHHHHHhccccccccc
Confidence 378999999999888888 899888887777888888887
No 5
>COG4591 LolE ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]
Probab=38.52 E-value=1.1e+02 Score=29.78 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=21.8
Q ss_pred HHHHH-hcCCCcccccchhhHHHHHHHH
Q 025573 83 VRKLW-DNSPQPVKSFPWNRALENFIQL 109 (250)
Q Consensus 83 ~~kLw-e~~PePVK~FPW~KA~~~fiq~ 109 (250)
++++- +..|++++--+|+..-.+|.+-
T Consensus 237 ~~~~~~~~~~~~~~~~~W~e~n~~~~~a 264 (408)
T COG4591 237 KRKLEIELLPQGLKAKDWREQNGEFFSA 264 (408)
T ss_pred HHHHHhhccCCCeEEechHHHhHHHHHH
Confidence 45666 6689999999999988888764
No 6
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=27.95 E-value=69 Score=24.37 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=39.2
Q ss_pred eehhHHHHHHHHHHHHHHHHhhCcccccCCCchHHHHHHHHHHHhhcCCCCCCCcccc
Q 025573 146 VPVPLLIGMAISDLLRETILDLSPLLKDAEVPWHLIAIGIFFTVIKLPGPYYPYWGRL 203 (250)
Q Consensus 146 IPigLl~G~~~Ag~LKETalELs~~lee~~~pwhLl~i~~fF~liK~~gpy~p~wgri 203 (250)
..=||+.++++-|++-=.|--||..+-.|.+ |=-+|+++..|+ .+|+|.+
T Consensus 9 ~~ngLitaFa~vG~~m~~S~~lS~~LT~Gri--hGSAIAI~lGLv------LAy~GG~ 58 (60)
T PF03818_consen 9 TKNGLITAFAVVGIIMWVSYWLSKKLTRGRI--HGSAIAIVLGLV------LAYIGGV 58 (60)
T ss_pred hhCchHHHHHHHHHHHHHHHHHHHHHhCCCc--chHHHHHHHHHH------HHHHccc
Confidence 3458899999999999999999999999987 566677776666 4565554
No 7
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=26.35 E-value=3e+02 Score=26.27 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhhhccceeeeehhHHHHHHHHHHHHHHHHhhCcccccCCCchHHH
Q 025573 102 ALENFIQLILDLFMAVVKYLSVPLLAVSSLSEMSYCAHEKKLFLVPVPLLIGMAISDLLRETILDLSPLLKDAEVPWHLI 181 (250)
Q Consensus 102 A~~~fiq~lL~L~~~vvKwl~VpvfavSsLSEmsYc~~~nKel~IPigLl~G~~~Ag~LKETalELs~~lee~~~pwhLl 181 (250)
..++.++.|.+...+++.- +++|+.++ |.++ ..++.-++|.+.+-||+.++.+++.-
T Consensus 143 ~~e~~i~~L~~~~~~~~~~------I~~S~~~~------------P~~l---R~i~~~l~~~v~~kFp~~~~~~~~~~-- 199 (333)
T cd05135 143 VRESSLEMLQGYLSSITDA------IVGSVSQC------------PPVM---RLTFKQLHKRVEERFPEAENQDVKYL-- 199 (333)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHhhHHhC------------CHHH---HHHHHHHHHHHHHHCCCCccchhhHH--
Confidence 3456777776666655553 56666654 5555 56788899999999998877777654
Q ss_pred HHHHHHHHhhcCCCCCCC
Q 025573 182 AIGIFFTVIKLPGPYYPY 199 (250)
Q Consensus 182 ~i~~fF~liK~~gpy~p~ 199 (250)
+++ =|++..|..|-.-+
T Consensus 200 ~Vg-~fiFLRFi~PAIvs 216 (333)
T cd05135 200 AIS-GFLFLRFFAPAILT 216 (333)
T ss_pred HHH-HHHHHHHhccccCC
Confidence 444 56777777776554
No 8
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=23.89 E-value=4.1e+02 Score=23.84 Aligned_cols=53 Identities=15% Similarity=0.299 Sum_probs=36.9
Q ss_pred CCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhhhccceeeeehhHHHHHHHHH
Q 025573 90 SPQPVKSFPWNRALENFIQLILDLFMAVVKYLSVPLLAVSSLSEMSYCAHEKKLFLVPVPLLIGMAISD 158 (250)
Q Consensus 90 ~PePVK~FPW~KA~~~fiq~lL~L~~~vvKwl~VpvfavSsLSEmsYc~~~nKel~IPigLl~G~~~Ag 158 (250)
.|.|.. .+..+.|.|..-. ..+..+.++.+--++.+|++|=+ +|+|+|.+++-
T Consensus 147 ~p~p~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------------~g~~~~~~~~~ 199 (224)
T PTZ00443 147 VPAPLS--FFALTIDFFVSGT-NEALRIYDAAFAGFFTISSFAFL-------------FGILMGLMIAL 199 (224)
T ss_pred CCCchH--HHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHH-------------HHHHHHHHHHH
Confidence 344444 7888888888877 88888888888777777775521 46666666553
No 9
>PF05361 PP1_inhibitor: PKC-activated protein phosphatase-1 inhibitor; InterPro: IPR008025 Contractility of vascular smooth muscle depends on phosphorylation of myosin light chains, and is modulated by hormonal control of myosin phosphatase activity. Signaling pathways activate kinases such as PKC or Rho-dependent kinases that phosphorylate the myosin phosphatase inhibitor protein called CPI-17. Phosphorylation of CPI-17 at Thr-38 enhances its inhibitory potency 1000-fold, creating a molecular switch for regulating contraction [].; GO: 0042325 regulation of phosphorylation, 0005737 cytoplasm; PDB: 2RLT_A 1J2M_A 1K5O_A 1J2N_A.
Probab=21.50 E-value=1.7e+02 Score=25.60 Aligned_cols=49 Identities=35% Similarity=0.656 Sum_probs=32.0
Q ss_pred cccCCCCC-CCccchHHHHH------HHHHHH---hcCCCcccccchhhHHHHHHHHHHHHHHHHHHH
Q 025573 63 MAAGQSGD-PEKLNLDQLVN------RVRKLW---DNSPQPVKSFPWNRALENFIQLILDLFMAVVKY 120 (250)
Q Consensus 63 ~t~~~s~e-p~kv~~~~li~------~~~kLw---e~~PePVK~FPW~KA~~~fiq~lL~L~~~vvKw 120 (250)
+..++.+| |++|++|.|++ ++++|- ..|+.|. +.||+-||.-..++=|-
T Consensus 62 Ly~~~e~~~p~EIDIDeLLDl~sdeeR~~~LqelL~~C~~pt---------E~FI~ELL~kLkgL~k~ 120 (144)
T PF05361_consen 62 LYDCQEDEMPEEIDIDELLDLESDEERRRKLQELLQDCPKPT---------EDFIQELLSKLKGLRKL 120 (144)
T ss_dssp CSSSSSTTS-SSSHHHHHHCTSSTTHHHHHHHHHHTTCSSTT---------HHHHHHHHHHCTTT---
T ss_pred HhcCCCCCCCCcccHHHHhcCCchHHHHHHHHHHHhhcCCCH---------HHHHHHHHHHHHhhhcC
Confidence 44556666 67999999874 344454 4799885 57999999866555443
No 10
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=19.57 E-value=2.1e+02 Score=20.82 Aligned_cols=29 Identities=28% Similarity=0.673 Sum_probs=23.1
Q ss_pred HHHHHhcCCCcccccchhhHHHHHHHHHHHHHHHHHHH
Q 025573 83 VRKLWDNSPQPVKSFPWNRALENFIQLILDLFMAVVKY 120 (250)
Q Consensus 83 ~~kLwe~~PePVK~FPW~KA~~~fiq~lL~L~~~vvKw 120 (250)
-|.+|-.+|.| ...|+|-|++++....|+
T Consensus 22 lE~~W~~~~~~---------~~~~lqglIq~A~a~~h~ 50 (62)
T PF03745_consen 22 LEELWKAAPGP---------ERDFLQGLIQLAVALYHL 50 (62)
T ss_dssp HHHHCCCT-CC---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCcc---------hHHHHHHHHHHHHHHHHH
Confidence 47788888776 678999999999988876
Done!