Query 025573
Match_columns 250
No_of_seqs 17 out of 19
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 13:04:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jrh_A Mitogen-activated prote 17.6 25 0.00085 27.7 -0.2 20 127-149 36-55 (94)
2 2i53_A Cyclin K; cell cycle, t 14.3 95 0.0032 25.5 2.5 21 175-195 80-100 (258)
3 2c60_A Human mitogen-activated 13.7 36 0.0012 27.4 -0.2 19 128-149 64-82 (111)
4 2npt_B Mitogen-activated prote 12.7 42 0.0014 26.6 -0.1 20 127-149 52-71 (100)
5 1ais_B TFB TFIIB, protein (tra 12.3 1.1E+02 0.0037 24.2 2.2 38 158-195 27-68 (200)
6 3mpz_A Cytidine deaminase; ssg 10.4 1.8E+02 0.0061 23.8 2.9 40 61-100 9-49 (150)
7 1c9b_A General transcription f 9.9 1.5E+02 0.005 23.7 2.2 37 159-195 24-64 (207)
8 2ivx_A Cyclin-T2; transcriptio 9.1 1.8E+02 0.006 24.0 2.5 21 175-195 70-90 (257)
9 1bia_A BIRA bifunctional prote 8.5 1.4E+02 0.0048 25.9 1.7 16 148-163 149-164 (321)
10 1zp2_A RNA polymerase II holoe 8.4 1.2E+02 0.0042 24.7 1.2 21 175-195 68-88 (235)
No 1
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=17.56 E-value=25 Score=27.67 Aligned_cols=20 Identities=5% Similarity=0.157 Sum_probs=16.2
Q ss_pred Hhhhhchhhhhhhccceeeeehh
Q 025573 127 AVSSLSEMSYCAHEKKLFLVPVP 149 (250)
Q Consensus 127 avSsLSEmsYc~~~nKel~IPig 149 (250)
|+.=-.||-|| |.|+.||+-
T Consensus 36 afGq~ldl~y~---nnEL~iPL~ 55 (94)
T 2jrh_A 36 VFGQPLDLHYM---NNELSILLK 55 (94)
T ss_dssp HHCSSEEEEEE---CSSCEEECC
T ss_pred HhCCeeeeEEe---cceeEEecc
Confidence 34556799999 999999974
No 2
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=14.34 E-value=95 Score=25.52 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=18.6
Q ss_pred CCchHHHHHHHHHHHhhcCCC
Q 025573 175 EVPWHLIAIGIFFTVIKLPGP 195 (250)
Q Consensus 175 ~~pwhLl~i~~fF~liK~~gp 195 (250)
+.+.+++|++|+|...|+-..
T Consensus 80 ~~~~qlv~~acL~lA~K~eE~ 100 (258)
T 2i53_A 80 QFPRYVTGACCLFLAGKVEET 100 (258)
T ss_dssp TSCHHHHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHHccccc
Confidence 467899999999999999883
No 3
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=13.70 E-value=36 Score=27.42 Aligned_cols=19 Identities=5% Similarity=0.163 Sum_probs=15.5
Q ss_pred hhhhchhhhhhhccceeeeehh
Q 025573 128 VSSLSEMSYCAHEKKLFLVPVP 149 (250)
Q Consensus 128 vSsLSEmsYc~~~nKel~IPig 149 (250)
+.=-.||-|| |.|++||+-
T Consensus 64 fGq~ldl~y~---nnEL~IPL~ 82 (111)
T 2c60_A 64 FGQPLDLHYM---NNELSILLK 82 (111)
T ss_dssp HSSCCEEEEE---CSSCEEECC
T ss_pred hCCeeeeEEe---cceEEEecc
Confidence 4556799999 999999973
No 4
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=12.69 E-value=42 Score=26.62 Aligned_cols=20 Identities=15% Similarity=0.458 Sum_probs=16.2
Q ss_pred Hhhhhchhhhhhhccceeeeehh
Q 025573 127 AVSSLSEMSYCAHEKKLFLVPVP 149 (250)
Q Consensus 127 avSsLSEmsYc~~~nKel~IPig 149 (250)
|+.--.||-|| |.|++||+-
T Consensus 52 afGq~ldl~y~---nnEL~iPL~ 71 (100)
T 2npt_B 52 AFGQSMDLHYT---NNELVIPLT 71 (100)
T ss_dssp HHTSCEEEEEE---ETTEEEECC
T ss_pred HhCCeeeeEEe---cceeEEecc
Confidence 34556799999 999999974
No 5
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=12.26 E-value=1.1e+02 Score=24.23 Aligned_cols=38 Identities=8% Similarity=-0.020 Sum_probs=30.9
Q ss_pred HHHHHHHHhhCcccccCC----CchHHHHHHHHHHHhhcCCC
Q 025573 158 DLLRETILDLSPLLKDAE----VPWHLIAIGIFFTVIKLPGP 195 (250)
Q Consensus 158 g~LKETalELs~~lee~~----~pwhLl~i~~fF~liK~~gp 195 (250)
.-..|||.+++.+..+.+ -+-..++.+|+|...|..+.
T Consensus 27 ~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~ 68 (200)
T 1ais_B 27 RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKV 68 (200)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCC
Confidence 356799999999887765 45678999999999999883
No 6
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=10.38 E-value=1.8e+02 Score=23.84 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=25.6
Q ss_pred cccccCCCCC-CCccchHHHHHHHHHHHhcCCCcccccchh
Q 025573 61 MNMAAGQSGD-PEKLNLDQLVNRVRKLWDNSPQPVKSFPWN 100 (250)
Q Consensus 61 mn~t~~~s~e-p~kv~~~~li~~~~kLwe~~PePVK~FPW~ 100 (250)
|.+-.+|--| +++++.+.|++++++.-+++=-|.-+||=.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~L~~~A~~a~~~AYaPYS~F~VG 49 (150)
T 3mpz_A 9 MGTLEAQTQGPGSMVNWNALRSKAIEVSRHAYAPYSGFPVG 49 (150)
T ss_dssp -----------CCSCCHHHHHHHHHHHHTTCBCTTTCCCCE
T ss_pred ccceeeccCCCCccHHHHHHHHHHHHHHHhccCCCCCCCEE
Confidence 3444455444 588999999999999999987777788754
No 7
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=9.86 E-value=1.5e+02 Score=23.68 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=29.6
Q ss_pred HHHHHHHhhCccccc----CCCchHHHHHHHHHHHhhcCCC
Q 025573 159 LLRETILDLSPLLKD----AEVPWHLIAIGIFFTVIKLPGP 195 (250)
Q Consensus 159 ~LKETalELs~~lee----~~~pwhLl~i~~fF~liK~~gp 195 (250)
-..|||..+|++.-+ .+-...+++.+|+|...|.-+.
T Consensus 24 ~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~ 64 (207)
T 1c9b_A 24 NIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV 64 (207)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC
Confidence 456888888877654 3567889999999999999885
No 8
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=9.12 E-value=1.8e+02 Score=24.02 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=18.9
Q ss_pred CCchHHHHHHHHHHHhhcCCC
Q 025573 175 EVPWHLIAIGIFFTVIKLPGP 195 (250)
Q Consensus 175 ~~pwhLl~i~~fF~liK~~gp 195 (250)
+....++|++|+|...|+-..
T Consensus 70 ~~~~qlv~~acL~lA~K~EE~ 90 (257)
T 2ivx_A 70 KFNKNIISSTALFLAAKVEEQ 90 (257)
T ss_dssp TSCHHHHHHHHHHHHHHHTTC
T ss_pred hhCHHHHHHHHHHHHhccccC
Confidence 467899999999999999987
No 9
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=8.49 E-value=1.4e+02 Score=25.91 Aligned_cols=16 Identities=31% Similarity=0.789 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHH
Q 025573 148 VPLLIGMAISDLLRET 163 (250)
Q Consensus 148 igLl~G~~~Ag~LKET 163 (250)
+++++|+++++.|++.
T Consensus 149 l~l~~~~av~~al~~~ 164 (321)
T 1bia_A 149 LSLVIGIVMAEVLRKL 164 (321)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6789999999999886
No 10
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=8.37 E-value=1.2e+02 Score=24.74 Aligned_cols=21 Identities=5% Similarity=0.025 Sum_probs=18.7
Q ss_pred CCchHHHHHHHHHHHhhcCCC
Q 025573 175 EVPWHLIAIGIFFTVIKLPGP 195 (250)
Q Consensus 175 ~~pwhLl~i~~fF~liK~~gp 195 (250)
+....+++++|+|...|.-..
T Consensus 68 ~~~~~lv~~acL~lA~K~Ee~ 88 (235)
T 1zp2_A 68 GFSLEALVATCIYLSCKVEEC 88 (235)
T ss_dssp CCCHHHHHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHHhccccC
Confidence 377899999999999999984
Done!