Query 025574
Match_columns 250
No_of_seqs 291 out of 2117
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:13:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1559 Gamma-glutamyl hydrola 100.0 3.8E-51 8.2E-56 352.6 16.6 242 1-250 1-254 (340)
2 cd01747 GATase1_Glutamyl_Hydro 100.0 3.2E-34 7E-39 257.1 15.8 184 63-250 1-198 (273)
3 PF07722 Peptidase_C26: Peptid 100.0 3.7E-30 8E-35 223.8 10.3 176 61-249 1-202 (217)
4 COG2071 Predicted glutamine am 99.9 4.7E-25 1E-29 191.6 12.8 165 58-240 1-196 (243)
5 PRK11366 puuD gamma-glutamyl-g 99.9 2E-22 4.4E-27 179.1 12.9 108 58-176 5-128 (254)
6 COG0118 HisH Glutamine amidotr 99.8 8.6E-21 1.9E-25 161.2 10.7 142 87-250 14-173 (204)
7 PRK06895 putative anthranilate 99.8 1.3E-18 2.7E-23 148.2 11.7 134 81-238 9-148 (190)
8 TIGR00888 guaA_Nterm GMP synth 99.8 1.1E-18 2.4E-23 148.0 11.3 130 88-240 12-145 (188)
9 COG0512 PabA Anthranilate/para 99.8 2.5E-18 5.5E-23 145.3 13.0 137 80-240 8-151 (191)
10 cd01745 GATase1_2 Subgroup of 99.8 1.6E-18 3.4E-23 147.6 10.7 105 63-176 1-121 (189)
11 PRK08007 para-aminobenzoate sy 99.8 2.1E-18 4.5E-23 146.7 11.4 136 81-240 7-149 (187)
12 PRK12564 carbamoyl phosphate s 99.8 7.5E-18 1.6E-22 156.5 15.7 155 42-240 155-319 (360)
13 PRK05637 anthranilate synthase 99.8 9.9E-18 2.1E-22 145.0 14.8 147 81-240 9-163 (208)
14 PRK06774 para-aminobenzoate sy 99.8 4E-18 8.6E-23 145.1 11.7 136 81-240 7-149 (191)
15 TIGR01368 CPSaseIIsmall carbam 99.8 9.5E-18 2.1E-22 155.6 15.1 156 42-242 151-317 (358)
16 cd01742 GATase1_GMP_Synthase T 99.8 4.4E-18 9.6E-23 143.0 11.1 129 89-240 13-145 (181)
17 PRK07765 para-aminobenzoate sy 99.8 7.1E-18 1.5E-22 146.4 12.7 137 83-240 10-153 (214)
18 TIGR00566 trpG_papA glutamine 99.8 8.5E-18 1.8E-22 143.0 12.1 136 81-240 7-149 (188)
19 cd01743 GATase1_Anthranilate_S 99.8 1.2E-17 2.5E-22 141.2 12.8 136 82-240 7-148 (184)
20 PRK05670 anthranilate synthase 99.7 9.6E-18 2.1E-22 142.5 11.7 134 81-238 7-147 (189)
21 PF00117 GATase: Glutamine ami 99.7 9.8E-18 2.1E-22 141.9 11.3 141 81-240 5-152 (192)
22 cd01744 GATase1_CPSase Small c 99.7 3.7E-17 8E-22 137.8 14.1 124 89-240 11-140 (178)
23 PRK08857 para-aminobenzoate sy 99.7 2.4E-17 5.2E-22 140.7 12.4 135 81-239 7-148 (193)
24 PLN02335 anthranilate synthase 99.7 2.5E-17 5.3E-22 143.8 11.5 137 82-239 27-172 (222)
25 PRK07649 para-aminobenzoate/an 99.7 3.7E-17 8.1E-22 140.0 11.1 135 81-239 7-148 (195)
26 PRK00758 GMP synthase subunit 99.7 2.5E-17 5.5E-22 139.2 9.6 124 89-240 14-142 (184)
27 PRK13170 hisH imidazole glycer 99.7 5.5E-17 1.2E-21 139.0 11.3 136 88-249 14-166 (196)
28 CHL00101 trpG anthranilate syn 99.7 5.8E-17 1.3E-21 138.1 10.7 136 81-240 7-149 (190)
29 cd01741 GATase1_1 Subgroup of 99.7 1.2E-16 2.6E-21 135.1 12.1 137 87-240 13-160 (188)
30 PRK09065 glutamine amidotransf 99.7 9E-17 2E-21 141.5 11.6 134 90-240 27-167 (237)
31 PLN02347 GMP synthetase 99.7 1E-16 2.2E-21 155.8 12.8 139 82-240 19-163 (536)
32 PLN02771 carbamoyl-phosphate s 99.7 3.7E-16 8E-21 146.7 14.5 127 87-242 251-383 (415)
33 COG0518 GuaA GMP synthase - Gl 99.7 1.4E-16 3.1E-21 136.8 10.7 132 90-240 17-156 (198)
34 COG0505 CarA Carbamoylphosphat 99.7 4.2E-16 9.1E-21 142.2 13.6 129 86-242 189-323 (368)
35 PRK07567 glutamine amidotransf 99.7 4.5E-16 9.7E-21 137.5 11.9 136 88-240 18-171 (242)
36 PRK12838 carbamoyl phosphate s 99.7 9.2E-16 2E-20 142.2 14.5 154 42-240 149-309 (354)
37 PRK13152 hisH imidazole glycer 99.7 6E-16 1.3E-20 132.9 12.1 135 88-248 13-170 (201)
38 PRK00074 guaA GMP synthase; Re 99.7 4.3E-16 9.3E-21 151.0 11.9 130 88-240 17-150 (511)
39 CHL00197 carA carbamoyl-phosph 99.7 1.3E-15 2.8E-20 142.4 14.0 81 88-176 204-284 (382)
40 PRK13566 anthranilate synthase 99.7 1.1E-15 2.3E-20 153.0 13.7 147 58-240 524-676 (720)
41 CHL00188 hisH imidazole glycer 99.7 5.3E-16 1.2E-20 134.4 9.9 142 88-250 15-180 (210)
42 PRK13146 hisH imidazole glycer 99.6 7.5E-16 1.6E-20 133.2 9.7 137 88-248 15-176 (209)
43 TIGR01815 TrpE-clade3 anthrani 99.6 2.5E-15 5.5E-20 150.2 14.2 149 56-240 512-666 (717)
44 PRK07053 glutamine amidotransf 99.6 9.4E-15 2E-19 128.6 14.3 134 89-240 18-159 (234)
45 PRK13181 hisH imidazole glycer 99.6 2.3E-15 4.9E-20 129.0 10.0 136 88-249 13-169 (199)
46 PRK14004 hisH imidazole glycer 99.6 5E-15 1.1E-19 128.3 11.9 140 87-249 12-179 (210)
47 PRK06490 glutamine amidotransf 99.6 1.8E-14 4E-19 127.1 15.2 131 89-240 23-160 (239)
48 PRK13525 glutamine amidotransf 99.6 4.2E-15 9.1E-20 126.7 9.4 144 60-238 1-152 (189)
49 PRK08250 glutamine amidotransf 99.6 9.9E-15 2.1E-19 128.4 12.1 133 90-239 17-160 (235)
50 PRK13142 hisH imidazole glycer 99.6 5.6E-15 1.2E-19 126.3 10.1 140 88-250 13-158 (192)
51 cd01748 GATase1_IGP_Synthase T 99.6 4.1E-15 8.8E-20 127.1 9.3 135 88-248 12-169 (198)
52 cd01746 GATase1_CTP_Synthase T 99.6 8.8E-15 1.9E-19 128.8 11.3 102 61-176 1-105 (235)
53 PRK05665 amidotransferase; Pro 99.6 1.1E-14 2.4E-19 128.6 11.6 132 90-239 28-166 (240)
54 PRK14607 bifunctional glutamin 99.6 1E-14 2.2E-19 142.1 10.8 136 81-240 7-150 (534)
55 PLN02889 oxo-acid-lyase/anthra 99.5 4E-14 8.7E-19 143.8 13.4 144 80-240 88-243 (918)
56 PRK13527 glutamine amidotransf 99.5 9.6E-14 2.1E-18 119.1 12.1 149 62-240 2-164 (200)
57 PRK13141 hisH imidazole glycer 99.5 6.6E-14 1.4E-18 120.3 10.4 134 88-248 13-170 (205)
58 PRK13143 hisH imidazole glycer 99.5 2.2E-13 4.7E-18 117.0 12.0 134 88-248 14-166 (200)
59 PRK09522 bifunctional glutamin 99.5 1E-13 2.2E-18 134.8 9.7 136 81-238 9-150 (531)
60 TIGR01855 IMP_synth_hisH imida 99.5 3.3E-13 7E-18 115.5 9.5 140 88-249 12-166 (196)
61 PLN02832 glutamine amidotransf 99.4 9.7E-13 2.1E-17 116.5 12.5 82 62-172 3-89 (248)
62 TIGR01823 PabB-fungal aminodeo 99.4 2.9E-12 6.4E-17 129.0 14.0 132 81-231 13-147 (742)
63 KOG0026 Anthranilate synthase, 99.4 5.1E-12 1.1E-16 104.5 12.6 153 56-245 15-177 (223)
64 TIGR00337 PyrG CTP synthase. C 99.4 4.1E-12 8.9E-17 122.4 13.2 99 58-176 287-393 (525)
65 cd01749 GATase1_PB Glutamine A 99.4 8.3E-13 1.8E-17 111.9 7.1 86 63-175 1-89 (183)
66 PLN02617 imidazole glycerol ph 99.4 3.4E-12 7.4E-17 124.2 11.2 135 88-249 20-179 (538)
67 TIGR01737 FGAM_synth_I phospho 99.4 1.4E-11 3E-16 107.9 13.9 90 62-175 2-100 (227)
68 PRK06186 hypothetical protein; 99.4 8.1E-12 1.8E-16 109.3 11.7 93 62-174 3-101 (229)
69 PRK05380 pyrG CTP synthetase; 99.3 2.9E-11 6.2E-16 116.8 13.7 100 59-176 287-393 (533)
70 TIGR03800 PLP_synth_Pdx2 pyrid 99.3 5.1E-11 1.1E-15 101.3 11.6 86 62-174 1-89 (184)
71 KOG0370 Multifunctional pyrimi 99.3 4.3E-11 9.3E-16 119.7 12.1 124 40-191 151-275 (1435)
72 KOG1622 GMP synthase [Nucleoti 99.2 1E-11 2.2E-16 116.1 6.8 127 91-238 33-163 (552)
73 KOG1224 Para-aminobenzoate (PA 99.2 6.4E-11 1.4E-15 112.7 11.9 150 81-248 22-183 (767)
74 cd01740 GATase1_FGAR_AT Type 1 99.2 1.1E-10 2.3E-15 102.9 10.7 94 63-175 1-104 (238)
75 PRK01175 phosphoribosylformylg 99.2 1.1E-10 2.4E-15 104.3 9.9 95 58-171 1-105 (261)
76 PLN02327 CTP synthase 99.1 8.6E-10 1.9E-14 106.9 15.0 99 60-176 297-412 (557)
77 COG0047 PurL Phosphoribosylfor 99.1 2.2E-10 4.9E-15 99.3 9.3 88 59-171 1-97 (231)
78 KOG3179 Predicted glutamine sy 99.1 3.9E-10 8.4E-15 96.1 9.4 135 90-240 30-173 (245)
79 KOG0623 Glutamine amidotransfe 99.1 2.2E-10 4.8E-15 104.3 7.4 141 87-250 14-178 (541)
80 PRK13526 glutamine amidotransf 99.1 5.4E-10 1.2E-14 94.5 8.5 84 60-171 2-88 (179)
81 PRK05368 homoserine O-succinyl 99.0 1.4E-09 3.1E-14 98.9 10.1 108 118-244 98-219 (302)
82 PRK03619 phosphoribosylformylg 99.0 6.7E-09 1.5E-13 90.5 11.8 90 62-175 2-101 (219)
83 COG0504 PyrG CTP synthase (UTP 98.9 3.4E-08 7.4E-13 93.9 13.7 95 61-173 289-390 (533)
84 cd01750 GATase1_CobQ Type 1 gl 98.8 1.6E-08 3.4E-13 86.5 7.9 73 88-172 13-89 (194)
85 cd03130 GATase1_CobB Type 1 gl 98.8 3E-08 6.5E-13 85.1 8.3 82 81-172 7-92 (198)
86 PF13507 GATase_5: CobB/CobQ-l 98.7 1.2E-08 2.6E-13 91.1 3.9 93 60-171 1-106 (259)
87 COG0311 PDX2 Predicted glutami 98.7 9.4E-08 2E-12 80.6 8.2 83 61-172 1-89 (194)
88 KOG2387 CTP synthase (UTP-ammo 98.6 4E-07 8.6E-12 85.7 12.4 97 59-173 297-410 (585)
89 PRK06278 cobyrinic acid a,c-di 98.6 1E-07 2.2E-12 92.0 7.3 71 89-172 10-82 (476)
90 TIGR01857 FGAM-synthase phosph 98.5 5.2E-07 1.1E-11 95.0 10.1 96 58-171 975-1090(1239)
91 cd03131 GATase1_HTS Type 1 glu 98.5 2.6E-07 5.6E-12 78.1 6.0 97 117-231 60-161 (175)
92 PF01174 SNO: SNO glutamine am 98.4 7.5E-07 1.6E-11 75.6 6.1 71 89-173 10-86 (188)
93 cd03146 GAT1_Peptidase_E Type 98.3 4.4E-06 9.6E-11 72.3 9.0 96 58-171 29-130 (212)
94 cd01653 GATase1 Type 1 glutami 98.3 5.3E-06 1.2E-10 60.8 8.0 76 88-168 15-92 (115)
95 PRK01077 cobyrinic acid a,c-di 98.2 4.3E-06 9.3E-11 80.3 8.7 92 59-172 244-339 (451)
96 PLN03206 phosphoribosylformylg 98.2 3.9E-06 8.5E-11 89.1 9.1 95 58-171 1035-1142(1307)
97 TIGR01735 FGAM_synt phosphorib 98.2 5.4E-06 1.2E-10 88.3 9.2 92 58-169 1053-1158(1310)
98 PRK05297 phosphoribosylformylg 98.2 6.5E-06 1.4E-10 87.8 9.4 93 59-171 1034-1140(1290)
99 PRK00784 cobyric acid synthase 98.2 6.1E-06 1.3E-10 80.0 8.4 87 60-172 251-342 (488)
100 TIGR00379 cobB cobyrinic acid 98.1 9.2E-06 2E-10 78.0 7.7 91 60-172 244-338 (449)
101 cd03128 GAT_1 Type 1 glutamine 98.0 2E-05 4.4E-10 55.1 6.2 75 89-168 16-92 (92)
102 PRK13896 cobyrinic acid a,c-di 97.9 3.3E-05 7.1E-10 73.9 7.6 89 61-172 234-325 (433)
103 KOG3210 Imidazoleglycerol-phos 97.9 3.7E-05 8E-10 64.2 6.5 91 59-174 10-110 (226)
104 PHA03366 FGAM-synthase; Provis 97.9 5.1E-05 1.1E-09 81.1 9.1 93 58-171 1026-1133(1304)
105 TIGR01739 tegu_FGAM_synt herpe 97.9 6.8E-05 1.5E-09 79.7 9.8 94 58-171 927-1034(1202)
106 PF07685 GATase_3: CobB/CobQ-l 97.5 6.1E-05 1.3E-09 62.3 3.2 53 116-173 4-60 (158)
107 PF04204 HTS: Homoserine O-suc 97.5 0.00031 6.7E-09 63.9 7.6 84 118-211 97-186 (298)
108 PRK05282 (alpha)-aspartyl dipe 97.5 0.00079 1.7E-08 59.4 9.5 98 59-172 30-130 (233)
109 cd03144 GATase1_ScBLP_like Typ 97.5 0.0001 2.3E-09 58.0 3.4 45 118-168 43-90 (114)
110 TIGR00313 cobQ cobyric acid sy 97.4 0.00022 4.7E-09 69.1 5.7 51 117-172 282-336 (475)
111 cd03133 GATase1_ES1 Type 1 glu 97.4 0.00059 1.3E-08 59.4 7.5 52 117-173 80-143 (213)
112 cd03169 GATase1_PfpI_1 Type 1 97.4 0.0011 2.5E-08 55.3 8.9 48 119-171 76-124 (180)
113 PRK11780 isoprenoid biosynthes 97.3 0.0012 2.5E-08 57.7 8.2 51 117-172 83-145 (217)
114 PRK04155 chaperone protein Hch 97.3 0.0036 7.7E-08 56.9 11.4 50 117-171 145-196 (287)
115 TIGR01382 PfpI intracellular p 97.2 0.0018 4E-08 53.0 8.6 78 89-171 17-108 (166)
116 TIGR01001 metA homoserine O-su 97.1 0.0029 6.2E-08 57.5 8.6 105 118-244 98-218 (300)
117 cd03134 GATase1_PfpI_like A ty 97.0 0.0049 1.1E-07 50.5 9.1 77 90-171 18-110 (165)
118 cd03147 GATase1_Ydr533c_like T 97.0 0.0017 3.7E-08 57.1 6.7 50 117-171 92-143 (231)
119 cd03129 GAT1_Peptidase_E_like 97.0 0.0041 8.8E-08 53.5 8.6 95 59-171 28-130 (210)
120 cd03148 GATase1_EcHsp31_like T 96.8 0.0041 9E-08 54.7 7.3 49 118-171 95-145 (232)
121 cd03132 GATase1_catalase Type 96.8 0.0094 2E-07 47.7 8.7 95 61-171 2-111 (142)
122 COG0693 ThiJ Putative intracel 96.7 0.01 2.3E-07 49.7 8.6 95 61-171 3-115 (188)
123 cd03137 GATase1_AraC_1 AraC tr 96.4 0.014 3E-07 48.8 7.4 50 117-171 62-112 (187)
124 PRK11574 oxidative-stress-resi 96.3 0.039 8.4E-07 46.6 9.9 96 59-170 1-114 (196)
125 PF01965 DJ-1_PfpI: DJ-1/PfpI 96.3 0.0025 5.4E-08 51.6 2.4 50 117-171 35-87 (147)
126 cd03140 GATase1_PfpI_3 Type 1 96.2 0.012 2.6E-07 48.8 5.9 49 118-171 59-107 (170)
127 COG3442 Predicted glutamine am 96.1 0.0055 1.2E-07 53.4 3.4 73 92-172 28-104 (250)
128 cd03135 GATase1_DJ-1 Type 1 gl 96.0 0.03 6.5E-07 45.4 7.5 78 89-171 16-109 (163)
129 cd03139 GATase1_PfpI_2 Type 1 95.9 0.023 4.9E-07 47.2 6.5 50 117-171 60-110 (183)
130 COG1492 CobQ Cobyric acid synt 95.8 0.017 3.6E-07 55.9 5.6 62 98-172 276-342 (486)
131 PRK11249 katE hydroperoxidase 95.5 0.064 1.4E-06 54.7 9.0 98 58-171 595-707 (752)
132 PF03575 Peptidase_S51: Peptid 95.5 0.043 9.4E-07 44.9 6.3 72 89-167 4-81 (154)
133 COG1897 MetA Homoserine trans- 95.3 0.072 1.6E-06 47.6 7.5 86 118-212 98-188 (307)
134 cd03141 GATase1_Hsp31_like Typ 95.3 0.02 4.4E-07 49.8 3.9 49 118-171 89-139 (221)
135 cd03138 GATase1_AraC_2 AraC tr 95.2 0.051 1.1E-06 45.6 6.0 50 117-171 67-120 (195)
136 TIGR02069 cyanophycinase cyano 95.1 0.12 2.7E-06 45.9 8.6 98 59-171 27-132 (250)
137 COG1797 CobB Cobyrinic acid a, 95.1 0.082 1.8E-06 50.6 7.6 88 61-172 246-340 (451)
138 KOG2764 Putative transcription 94.9 0.094 2E-06 46.1 6.8 68 91-165 25-110 (247)
139 cd03145 GAT1_cyanophycinase Ty 94.8 0.21 4.5E-06 43.3 8.9 96 59-171 28-133 (217)
140 cd03136 GATase1_AraC_ArgR_like 94.0 0.097 2.1E-06 43.6 5.0 50 117-171 62-111 (185)
141 TIGR01383 not_thiJ DJ-1 family 93.9 0.064 1.4E-06 44.3 3.6 50 117-171 61-112 (179)
142 PRK09393 ftrA transcriptional 93.5 0.17 3.8E-06 46.0 6.1 50 117-171 73-122 (322)
143 COG3340 PepE Peptidase E [Amin 93.0 0.47 1E-05 41.5 7.5 94 60-166 32-129 (224)
144 KOG1907 Phosphoribosylformylgl 92.8 0.28 6E-06 50.7 6.7 96 58-171 1056-1163(1320)
145 PF13278 DUF4066: Putative ami 92.4 0.13 2.8E-06 42.1 3.2 50 117-171 59-109 (166)
146 PRK03372 ppnK inorganic polyph 92.1 0.52 1.1E-05 43.3 7.1 83 62-165 7-106 (306)
147 PRK01911 ppnK inorganic polyph 91.3 0.8 1.7E-05 41.8 7.4 83 62-165 2-98 (292)
148 PRK03378 ppnK inorganic polyph 91.1 0.75 1.6E-05 41.9 7.0 84 61-165 6-97 (292)
149 PRK02649 ppnK inorganic polyph 90.8 0.82 1.8E-05 42.0 6.9 83 62-165 3-102 (305)
150 PRK04539 ppnK inorganic polyph 90.3 1.1 2.4E-05 40.9 7.4 83 62-165 7-102 (296)
151 PRK02155 ppnK NAD(+)/NADH kina 88.2 1.8 3.9E-05 39.4 7.1 83 62-165 7-97 (291)
152 PRK14077 pnk inorganic polypho 87.4 1.9 4.1E-05 39.2 6.7 82 62-165 12-98 (287)
153 PRK01231 ppnK inorganic polyph 87.0 2 4.4E-05 39.2 6.7 83 62-165 6-96 (295)
154 PF09825 BPL_N: Biotin-protein 86.1 1.5 3.2E-05 41.4 5.4 47 117-170 47-97 (367)
155 PF06283 ThuA: Trehalose utili 85.7 17 0.00037 31.0 11.6 108 88-212 22-138 (217)
156 PRK01215 competence damage-ind 84.5 4.4 9.5E-05 36.4 7.5 69 58-131 1-74 (264)
157 COG0303 MoeA Molybdopterin bio 83.8 8.1 0.00017 36.9 9.3 75 57-131 173-254 (404)
158 PLN02935 Bifunctional NADH kin 83.8 3.1 6.7E-05 40.8 6.6 83 61-164 195-295 (508)
159 TIGR02667 moaB_proteo molybden 83.7 8.5 0.00018 31.9 8.4 67 59-132 3-76 (163)
160 PRK03708 ppnK inorganic polyph 83.1 3.4 7.4E-05 37.3 6.3 82 62-165 2-90 (277)
161 COG0655 WrbA Multimeric flavod 82.2 6.5 0.00014 33.5 7.4 57 62-126 3-82 (207)
162 COG4090 Uncharacterized protei 82.2 2.8 6E-05 33.9 4.6 49 117-174 83-133 (154)
163 PRK02231 ppnK inorganic polyph 79.4 4.6 0.0001 36.5 5.7 65 88-164 3-75 (272)
164 PLN02929 NADH kinase 78.9 4.1 9E-05 37.4 5.3 60 88-164 37-96 (301)
165 TIGR00177 molyb_syn molybdenum 78.8 16 0.00034 29.4 8.2 44 89-132 31-79 (144)
166 PF02514 CobN-Mg_chel: CobN/Ma 78.3 7.3 0.00016 41.9 7.6 99 58-171 69-176 (1098)
167 PF01513 NAD_kinase: ATP-NAD k 78.1 1.5 3.2E-05 39.6 2.1 82 62-165 1-110 (285)
168 PRK14076 pnk inorganic polypho 77.8 5.9 0.00013 39.4 6.5 86 59-165 288-382 (569)
169 PRK09417 mogA molybdenum cofac 76.9 13 0.00028 31.9 7.4 85 59-150 2-95 (193)
170 PF03358 FMN_red: NADPH-depend 76.8 13 0.00027 29.6 7.1 94 62-164 3-115 (152)
171 cd00886 MogA_MoaB MogA_MoaB fa 76.2 16 0.00035 29.6 7.6 43 90-132 25-74 (152)
172 PRK10680 molybdopterin biosynt 75.9 19 0.00042 34.4 9.1 76 57-132 174-256 (411)
173 PRK14690 molybdopterin biosynt 75.3 22 0.00049 34.0 9.4 77 56-132 189-272 (419)
174 PF05368 NmrA: NmrA-like famil 75.1 18 0.00039 30.8 8.0 60 89-150 35-94 (233)
175 cd00887 MoeA MoeA family. Memb 74.6 23 0.0005 33.5 9.3 76 57-132 165-247 (394)
176 cd06281 PBP1_LacI_like_5 Ligan 74.0 27 0.00058 29.9 9.0 46 84-129 15-65 (269)
177 cd06295 PBP1_CelR Ligand bindi 74.0 28 0.00061 29.8 9.1 44 86-129 28-74 (275)
178 PRK02645 ppnK inorganic polyph 73.9 11 0.00023 34.6 6.6 81 62-163 5-89 (305)
179 cd06274 PBP1_FruR Ligand bindi 73.9 24 0.00051 30.1 8.6 46 84-129 15-65 (264)
180 cd01542 PBP1_TreR_like Ligand- 73.6 21 0.00045 30.2 8.1 45 84-128 15-64 (259)
181 PLN02727 NAD kinase 73.4 9 0.0002 40.3 6.5 83 61-165 679-777 (986)
182 COG4917 EutP Ethanolamine util 73.4 9.2 0.0002 31.0 5.2 41 55-105 86-126 (148)
183 PF07085 DRTGG: DRTGG domain; 72.7 12 0.00026 28.2 5.7 61 90-164 34-94 (105)
184 PF03698 UPF0180: Uncharacteri 72.1 7 0.00015 28.8 4.0 35 89-130 12-46 (80)
185 cd00758 MoCF_BD MoCF_BD: molyb 71.6 21 0.00045 28.2 7.1 43 90-132 24-71 (133)
186 cd06305 PBP1_methylthioribose_ 71.3 30 0.00065 29.5 8.6 67 84-161 15-86 (273)
187 cd06273 PBP1_GntR_like_1 This 70.8 28 0.0006 29.6 8.3 63 86-161 17-84 (268)
188 cd06292 PBP1_LacI_like_10 Liga 70.1 36 0.00077 29.1 8.9 46 83-128 14-64 (273)
189 PRK14497 putative molybdopteri 69.3 26 0.00055 34.9 8.5 80 52-131 171-257 (546)
190 PRK04885 ppnK inorganic polyph 69.0 12 0.00025 33.7 5.6 55 85-165 15-71 (265)
191 cd06299 PBP1_LacI_like_13 Liga 68.7 38 0.00083 28.7 8.7 44 86-129 17-65 (265)
192 PRK06852 aldolase; Validated 68.7 39 0.00084 31.1 9.0 91 59-164 167-265 (304)
193 cd06318 PBP1_ABC_sugar_binding 68.6 33 0.00071 29.5 8.3 46 83-128 14-64 (282)
194 PRK03094 hypothetical protein; 68.5 9.9 0.00022 28.1 4.1 34 90-130 13-46 (80)
195 cd01575 PBP1_GntR Ligand-bindi 68.3 30 0.00064 29.3 7.9 44 86-129 17-65 (268)
196 smart00852 MoCF_biosynth Proba 68.3 15 0.00032 28.9 5.6 42 90-131 23-69 (135)
197 cd06267 PBP1_LacI_sugar_bindin 67.9 37 0.0008 28.3 8.3 66 83-161 14-84 (264)
198 cd01545 PBP1_SalR Ligand-bindi 67.8 39 0.00086 28.6 8.6 46 84-129 15-66 (270)
199 PRK10936 TMAO reductase system 67.6 59 0.0013 29.5 10.1 62 59-128 45-113 (343)
200 PRK10569 NAD(P)H-dependent FMN 67.4 40 0.00086 28.6 8.3 92 62-164 3-108 (191)
201 PRK10355 xylF D-xylose transpo 67.4 48 0.0011 30.1 9.5 84 59-161 24-112 (330)
202 COG2185 Sbm Methylmalonyl-CoA 67.0 70 0.0015 26.2 9.6 56 92-150 34-91 (143)
203 cd06283 PBP1_RegR_EndR_KdgR_li 66.8 36 0.00077 28.8 8.1 46 84-129 15-65 (267)
204 PRK01185 ppnK inorganic polyph 66.8 18 0.00038 32.7 6.3 74 63-164 3-82 (271)
205 cd03522 MoeA_like MoeA_like. T 66.8 24 0.00052 32.5 7.3 72 57-133 156-233 (312)
206 cd06298 PBP1_CcpA_like Ligand- 66.6 36 0.00079 28.8 8.1 46 84-129 15-65 (268)
207 PRK14491 putative bifunctional 65.6 29 0.00062 34.9 8.1 77 56-132 363-446 (597)
208 PRK10653 D-ribose transporter 64.1 66 0.0014 28.2 9.5 62 59-128 25-91 (295)
209 cd00885 cinA Competence-damage 63.8 29 0.00063 28.9 6.7 42 90-131 24-70 (170)
210 PF10087 DUF2325: Uncharacteri 63.6 40 0.00087 25.0 6.9 73 88-169 13-90 (97)
211 cd06282 PBP1_GntR_like_2 Ligan 63.5 40 0.00086 28.5 7.7 64 86-161 17-85 (266)
212 PRK03501 ppnK inorganic polyph 63.2 27 0.00058 31.4 6.7 69 62-164 4-74 (264)
213 cd06309 PBP1_YtfQ_like Peripla 63.0 38 0.00083 29.0 7.6 46 84-129 15-65 (273)
214 cd01538 PBP1_ABC_xylose_bindin 62.4 45 0.00097 29.1 8.1 66 85-161 16-86 (288)
215 PF13407 Peripla_BP_4: Peripla 61.2 53 0.0011 27.8 8.1 71 83-164 13-89 (257)
216 cd01541 PBP1_AraR Ligand-bindi 61.2 55 0.0012 28.0 8.3 45 84-128 15-64 (273)
217 COG4977 Transcriptional regula 61.1 21 0.00046 33.1 5.9 49 118-171 75-124 (328)
218 PRK05569 flavodoxin; Provision 60.9 70 0.0015 25.0 8.2 78 81-162 13-92 (141)
219 cd06279 PBP1_LacI_like_3 Ligan 60.8 55 0.0012 28.4 8.3 44 86-129 22-66 (283)
220 cd01540 PBP1_arabinose_binding 60.6 61 0.0013 27.9 8.5 66 85-162 16-86 (289)
221 PRK10014 DNA-binding transcrip 60.4 71 0.0015 28.4 9.2 63 59-129 63-130 (342)
222 cd06322 PBP1_ABC_sugar_binding 60.2 52 0.0011 28.0 7.9 44 85-128 16-64 (267)
223 COG0061 nadF NAD kinase [Coenz 59.9 24 0.00052 31.8 5.9 80 62-164 2-88 (281)
224 TIGR01753 flav_short flavodoxi 59.7 74 0.0016 24.4 8.1 79 81-162 10-89 (140)
225 PRK12493 magnesium chelatase s 59.6 31 0.00067 37.9 7.5 100 60-172 253-365 (1310)
226 PLN03069 magnesiumprotoporphyr 59.3 37 0.00081 37.1 8.0 102 58-172 264-377 (1220)
227 cd01537 PBP1_Repressors_Sugar_ 59.2 57 0.0012 27.1 7.9 47 84-130 15-66 (264)
228 PRK10703 DNA-binding transcrip 58.9 83 0.0018 28.1 9.3 63 59-129 58-125 (341)
229 PRK06756 flavodoxin; Provision 58.8 89 0.0019 24.7 8.9 44 81-126 13-56 (148)
230 cd06300 PBP1_ABC_sugar_binding 58.7 83 0.0018 26.8 9.0 68 83-161 14-91 (272)
231 cd06324 PBP1_ABC_sugar_binding 58.6 88 0.0019 27.6 9.3 63 86-160 18-87 (305)
232 PRK08227 autoinducer 2 aldolas 58.6 56 0.0012 29.4 8.0 87 59-165 140-227 (264)
233 cd06301 PBP1_rhizopine_binding 58.3 72 0.0016 27.1 8.5 67 83-160 14-86 (272)
234 PRK14498 putative molybdopteri 58.2 48 0.001 33.3 8.2 76 57-132 183-265 (633)
235 PRK14075 pnk inorganic polypho 58.1 29 0.00062 30.9 6.0 59 86-165 14-72 (256)
236 cd06271 PBP1_AglR_RafR_like Li 57.9 78 0.0017 26.7 8.6 44 86-129 21-69 (268)
237 cd01536 PBP1_ABC_sugar_binding 57.5 75 0.0016 26.6 8.4 47 83-129 14-65 (267)
238 cd06302 PBP1_LsrB_Quorum_Sensi 57.5 73 0.0016 28.0 8.6 46 83-128 14-65 (298)
239 cd06294 PBP1_ycjW_transcriptio 57.3 80 0.0017 26.7 8.6 43 86-128 22-69 (270)
240 PRK09271 flavodoxin; Provision 57.0 1E+02 0.0023 24.9 9.0 82 81-162 12-94 (160)
241 cd06285 PBP1_LacI_like_7 Ligan 56.7 85 0.0018 26.6 8.7 43 86-128 17-64 (265)
242 cd06296 PBP1_CatR_like Ligand- 56.6 63 0.0014 27.4 7.8 44 85-128 16-64 (270)
243 cd06310 PBP1_ABC_sugar_binding 56.2 76 0.0017 27.0 8.3 45 84-128 15-66 (273)
244 cd06297 PBP1_LacI_like_12 Liga 55.7 72 0.0016 27.4 8.1 46 84-129 15-65 (269)
245 cd06323 PBP1_ribose_binding Pe 55.7 69 0.0015 27.0 7.9 44 84-127 15-63 (268)
246 PRK11303 DNA-binding transcrip 55.2 1.3E+02 0.0027 26.7 9.8 62 59-128 60-126 (328)
247 COG4242 CphB Cyanophycinase an 55.2 32 0.0007 31.0 5.7 97 60-171 52-156 (293)
248 cd06320 PBP1_allose_binding Pe 55.1 89 0.0019 26.7 8.6 65 86-161 17-88 (275)
249 TIGR02990 ectoine_eutA ectoine 55.1 1E+02 0.0023 27.1 9.0 59 59-130 119-192 (239)
250 cd06317 PBP1_ABC_sugar_binding 54.9 72 0.0016 27.1 7.9 65 86-161 18-87 (275)
251 cd06272 PBP1_hexuronate_repres 54.8 76 0.0016 26.9 8.0 43 86-128 17-60 (261)
252 PRK07308 flavodoxin; Validated 54.7 1.1E+02 0.0023 24.3 8.6 77 81-161 13-90 (146)
253 COG4285 Uncharacterized conser 53.9 12 0.00027 32.9 2.8 44 119-175 49-97 (253)
254 cd06311 PBP1_ABC_sugar_binding 53.9 97 0.0021 26.5 8.6 65 85-160 16-90 (274)
255 PF10662 PduV-EutP: Ethanolami 53.6 32 0.00069 28.1 5.1 38 56-102 86-123 (143)
256 cd06287 PBP1_LacI_like_8 Ligan 53.2 75 0.0016 27.6 7.9 45 82-128 21-65 (269)
257 PRK14987 gluconate operon tran 52.5 1.2E+02 0.0025 27.0 9.2 61 59-127 62-127 (331)
258 COG2984 ABC-type uncharacteriz 52.5 1.6E+02 0.0034 27.4 9.9 85 59-161 158-245 (322)
259 cd06293 PBP1_LacI_like_11 Liga 52.4 1.2E+02 0.0026 25.7 8.9 45 84-128 15-64 (269)
260 cd06284 PBP1_LacI_like_6 Ligan 52.0 1E+02 0.0022 26.0 8.3 43 86-128 17-64 (267)
261 cd06321 PBP1_ABC_sugar_binding 52.0 90 0.0019 26.6 8.1 66 85-161 16-88 (271)
262 cd06312 PBP1_ABC_sugar_binding 51.8 1.3E+02 0.0027 25.7 9.0 67 86-163 18-90 (271)
263 cd06288 PBP1_sucrose_transcrip 51.7 1.2E+02 0.0025 25.7 8.7 45 85-129 17-66 (269)
264 PRK06851 hypothetical protein; 51.5 48 0.001 31.3 6.6 53 59-128 213-265 (367)
265 TIGR01481 ccpA catabolite cont 51.3 1.3E+02 0.0028 26.6 9.2 62 59-128 58-124 (329)
266 PRK03767 NAD(P)H:quinone oxido 51.1 74 0.0016 26.8 7.2 65 81-146 13-95 (200)
267 cd06319 PBP1_ABC_sugar_binding 50.4 1.3E+02 0.0028 25.6 8.8 44 85-128 16-64 (277)
268 cd06289 PBP1_MalI_like Ligand- 50.2 1.1E+02 0.0023 25.8 8.2 43 86-128 17-64 (268)
269 COG1609 PurR Transcriptional r 49.2 1.3E+02 0.0027 27.6 8.9 61 59-127 57-122 (333)
270 cd06277 PBP1_LacI_like_1 Ligan 49.1 1E+02 0.0022 26.2 8.0 45 84-128 18-67 (268)
271 PF00532 Peripla_BP_1: Peripla 48.9 1.1E+02 0.0024 27.1 8.3 60 61-128 2-65 (279)
272 PRK09250 fructose-bisphosphate 48.6 1.2E+02 0.0026 28.5 8.6 47 84-131 217-292 (348)
273 PRK00911 dihydroxy-acid dehydr 48.6 90 0.0019 31.2 8.2 44 59-106 30-73 (552)
274 TIGR02417 fruct_sucro_rep D-fr 48.5 1.9E+02 0.0041 25.5 9.9 62 59-128 59-125 (327)
275 cd06278 PBP1_LacI_like_2 Ligan 48.2 1.2E+02 0.0027 25.4 8.3 43 86-128 17-63 (266)
276 PF00834 Ribul_P_3_epim: Ribul 47.9 85 0.0019 26.9 7.1 40 89-128 96-136 (201)
277 cd05014 SIS_Kpsf KpsF-like pro 47.8 59 0.0013 24.7 5.7 69 83-163 10-82 (128)
278 cd01544 PBP1_GalR Ligand-bindi 47.7 1.3E+02 0.0029 25.6 8.5 59 63-127 2-60 (270)
279 PF04230 PS_pyruv_trans: Polys 47.3 1E+02 0.0022 25.7 7.6 27 82-108 3-29 (286)
280 cd06315 PBP1_ABC_sugar_binding 47.3 1.8E+02 0.004 25.1 9.4 43 86-128 18-65 (280)
281 cd06308 PBP1_sensor_kinase_lik 47.2 1.1E+02 0.0024 26.0 7.9 66 86-162 17-88 (270)
282 COG0521 MoaB Molybdopterin bio 46.9 35 0.00076 28.7 4.4 84 89-181 31-120 (169)
283 KOG2708 Predicted metalloprote 46.6 64 0.0014 28.9 6.1 69 81-172 48-120 (336)
284 cd06291 PBP1_Qymf_like Ligand 46.6 1.1E+02 0.0025 25.7 7.8 45 84-128 15-64 (265)
285 PLN02699 Bifunctional molybdop 46.4 1.1E+02 0.0024 31.2 8.7 76 56-131 177-261 (659)
286 PF02601 Exonuc_VII_L: Exonucl 46.2 40 0.00087 30.6 5.1 42 119-166 75-117 (319)
287 PRK11104 hemG protoporphyrinog 46.0 96 0.0021 25.8 7.0 74 81-164 12-87 (177)
288 TIGR00110 ilvD dihydroxy-acid 45.9 1.2E+02 0.0027 30.1 8.7 44 59-106 10-53 (535)
289 PF06792 UPF0261: Uncharacteri 45.4 1.3E+02 0.0029 28.8 8.5 100 58-182 183-295 (403)
290 TIGR00200 cinA_nterm competenc 45.4 86 0.0019 30.0 7.4 40 91-130 26-70 (413)
291 PRK08883 ribulose-phosphate 3- 45.4 88 0.0019 27.2 6.9 40 89-128 97-137 (220)
292 cd06270 PBP1_GalS_like Ligand 44.8 1.4E+02 0.0031 25.3 8.2 43 86-128 17-64 (268)
293 PF00389 2-Hacid_dh: D-isomer 44.6 78 0.0017 24.6 6.0 39 89-129 10-48 (133)
294 PRK01372 ddl D-alanine--D-alan 43.7 1.7E+02 0.0037 25.9 8.8 61 59-126 3-63 (304)
295 PRK00549 competence damage-ind 43.6 93 0.002 29.7 7.3 41 91-131 26-71 (414)
296 cd06316 PBP1_ABC_sugar_binding 43.3 1.7E+02 0.0037 25.3 8.6 67 83-160 14-86 (294)
297 TIGR02634 xylF D-xylose ABC tr 42.9 1.6E+02 0.0035 26.0 8.4 63 88-161 18-85 (302)
298 PRK13405 bchH magnesium chelat 42.7 90 0.0019 34.2 7.7 101 59-172 245-355 (1209)
299 cd06314 PBP1_tmGBP Periplasmic 42.7 1.5E+02 0.0033 25.3 8.0 43 86-128 16-64 (271)
300 PF09822 ABC_transp_aux: ABC-t 42.5 1.7E+02 0.0037 25.7 8.5 81 59-150 145-225 (271)
301 PRK03673 hypothetical protein; 42.0 1.1E+02 0.0023 29.3 7.4 46 81-130 21-71 (396)
302 KOG3974 Predicted sugar kinase 42.0 60 0.0013 29.5 5.3 54 110-168 92-145 (306)
303 PF04392 ABC_sub_bind: ABC tra 41.9 43 0.00094 29.8 4.6 68 86-163 148-219 (294)
304 cd06306 PBP1_TorT-like TorT-li 41.9 1.9E+02 0.0041 24.7 8.6 43 86-128 17-66 (268)
305 TIGR00147 lipid kinase, YegS/R 41.7 2.1E+02 0.0045 25.4 9.0 62 62-130 3-68 (293)
306 PRK13017 dihydroxy-acid dehydr 41.6 1.5E+02 0.0033 29.8 8.6 78 50-131 36-132 (596)
307 PRK09739 hypothetical protein; 41.4 1.7E+02 0.0036 24.5 7.9 39 59-105 3-41 (199)
308 PRK04761 ppnK inorganic polyph 41.3 26 0.00056 31.2 3.0 37 117-165 23-59 (246)
309 cd01574 PBP1_LacI Ligand-bindi 41.0 2.1E+02 0.0046 24.0 8.7 44 86-129 17-66 (264)
310 cd06280 PBP1_LacI_like_4 Ligan 40.9 1E+02 0.0022 26.2 6.6 43 86-128 17-64 (263)
311 PRK00170 azoreductase; Reviewe 40.4 1.4E+02 0.0031 24.6 7.3 40 60-106 2-43 (201)
312 cd01543 PBP1_XylR Ligand-bindi 40.4 1.2E+02 0.0026 25.8 7.0 44 83-127 13-58 (265)
313 cd01422 MGS Methylglyoxal synt 40.3 1.4E+02 0.0031 23.0 6.7 64 90-159 36-105 (115)
314 PLN03241 magnesium chelatase s 40.3 1.1E+02 0.0024 33.9 8.0 40 59-106 315-354 (1353)
315 COG1058 CinA Predicted nucleot 40.2 1.1E+02 0.0025 27.4 6.9 46 81-130 21-71 (255)
316 PRK03604 moaC bifunctional mol 39.7 1.8E+02 0.0038 26.9 8.3 67 62-133 157-229 (312)
317 PRK06851 hypothetical protein; 39.1 88 0.0019 29.6 6.3 52 59-127 29-80 (367)
318 cd06313 PBP1_ABC_sugar_binding 38.8 1.6E+02 0.0034 25.4 7.6 44 85-128 16-64 (272)
319 PF00994 MoCF_biosynth: Probab 38.7 70 0.0015 25.3 4.9 76 90-174 22-102 (144)
320 TIGR03567 FMN_reduc_SsuE FMN r 38.5 2.2E+02 0.0047 23.2 8.3 76 62-146 2-91 (171)
321 PLN02699 Bifunctional molybdop 38.5 2.2E+02 0.0047 29.1 9.4 74 58-132 456-537 (659)
322 PRK03670 competence damage-ind 38.4 1.4E+02 0.003 26.6 7.1 40 91-130 26-71 (252)
323 PRK06015 keto-hydroxyglutarate 38.3 1.2E+02 0.0025 26.2 6.4 95 58-170 2-112 (201)
324 TIGR01754 flav_RNR ribonucleot 38.0 1.5E+02 0.0033 23.2 6.8 78 81-162 12-90 (140)
325 PF09897 DUF2124: Uncharacteri 38.0 12 0.00026 30.8 0.3 42 120-170 81-124 (147)
326 PRK11914 diacylglycerol kinase 37.3 2.3E+02 0.0049 25.4 8.6 61 62-130 10-75 (306)
327 PRK00561 ppnK inorganic polyph 37.1 31 0.00067 31.0 2.8 36 118-165 32-67 (259)
328 PRK06131 dihydroxy-acid dehydr 36.8 1.5E+02 0.0032 29.8 7.6 78 50-131 28-123 (571)
329 cd01539 PBP1_GGBP Periplasmic 36.5 2.2E+02 0.0047 25.0 8.3 65 86-161 17-88 (303)
330 PRK13016 dihydroxy-acid dehydr 36.4 1.6E+02 0.0035 29.6 7.8 100 50-164 32-149 (577)
331 COG3155 ElbB Uncharacterized p 36.3 58 0.0013 27.5 4.0 52 118-174 84-147 (217)
332 PF09075 STb_secrete: Heat-sta 36.2 13 0.00028 23.8 0.1 15 158-172 32-46 (48)
333 PRK09722 allulose-6-phosphate 35.7 1.7E+02 0.0038 25.6 7.3 39 89-127 99-138 (229)
334 PRK12448 dihydroxy-acid dehydr 35.4 2.3E+02 0.005 28.8 8.7 43 59-105 32-74 (615)
335 PF00365 PFK: Phosphofructokin 34.3 60 0.0013 29.3 4.3 42 122-170 4-45 (282)
336 PF00289 CPSase_L_chain: Carba 34.3 95 0.0021 23.9 4.8 62 86-150 13-74 (110)
337 PRK05568 flavodoxin; Provision 33.8 1E+02 0.0022 24.0 5.1 43 81-126 13-55 (142)
338 TIGR02405 trehalos_R_Ecol treh 33.7 1.8E+02 0.004 25.5 7.3 62 59-128 58-124 (311)
339 PRK10423 transcriptional repre 33.4 2.2E+02 0.0048 25.0 7.8 63 59-129 55-122 (327)
340 PRK00286 xseA exodeoxyribonucl 33.4 1.1E+02 0.0025 29.1 6.2 88 60-166 135-234 (438)
341 PRK11921 metallo-beta-lactamas 32.3 2.2E+02 0.0048 26.7 7.9 80 81-161 259-341 (394)
342 PRK08745 ribulose-phosphate 3- 32.2 2.2E+02 0.0047 24.9 7.3 39 89-127 101-140 (223)
343 TIGR02025 BchH magnesium chela 32.2 1.9E+02 0.004 31.9 8.1 101 59-172 238-350 (1216)
344 PRK08091 ribulose-phosphate 3- 31.9 2.3E+02 0.0049 25.0 7.3 38 89-126 107-147 (228)
345 cd06286 PBP1_CcpB_like Ligand- 31.5 1.6E+02 0.0034 24.8 6.3 46 83-128 14-64 (260)
346 PRK09492 treR trehalose repres 31.5 2.3E+02 0.005 24.8 7.5 61 60-128 62-127 (315)
347 PTZ00445 p36-lilke protein; Pr 31.5 1.6E+02 0.0035 25.8 6.2 67 86-168 30-104 (219)
348 KOG4180 Predicted kinase [Gene 31.5 45 0.00099 31.2 2.9 56 90-161 80-135 (395)
349 COG1703 ArgK Putative periplas 31.2 1.2E+02 0.0026 28.1 5.6 44 55-108 46-89 (323)
350 PRK07667 uridine kinase; Provi 31.1 1.1E+02 0.0025 25.4 5.2 40 58-107 15-54 (193)
351 cd06275 PBP1_PurR Ligand-bindi 30.9 2E+02 0.0043 24.3 6.8 44 86-129 17-65 (269)
352 COG5039 Exopolysaccharide bios 30.7 3.4E+02 0.0073 25.3 8.3 68 59-133 28-100 (339)
353 cd00532 MGS-like MGS-like doma 30.4 2.3E+02 0.005 21.4 6.5 64 91-159 35-103 (112)
354 COG0036 Rpe Pentose-5-phosphat 30.2 2E+02 0.0044 25.2 6.7 39 89-127 100-139 (220)
355 PF13380 CoA_binding_2: CoA bi 30.2 1.2E+02 0.0027 23.3 4.9 19 89-107 18-36 (116)
356 TIGR02637 RhaS rhamnose ABC tr 29.9 3.3E+02 0.0072 23.6 8.3 67 84-161 14-87 (302)
357 TIGR03566 FMN_reduc_MsuE FMN r 29.7 3E+02 0.0066 22.3 7.5 92 62-164 2-110 (174)
358 cd05565 PTS_IIB_lactose PTS_II 29.6 2.5E+02 0.0054 21.3 7.1 43 82-126 12-54 (99)
359 TIGR03521 GldG gliding-associa 29.6 2.6E+02 0.0056 27.7 8.1 79 58-150 181-262 (552)
360 TIGR00237 xseA exodeoxyribonuc 29.4 1.1E+02 0.0025 29.3 5.5 87 61-166 130-229 (432)
361 COG1597 LCB5 Sphingosine kinas 29.3 2.9E+02 0.0063 25.1 7.9 44 87-130 22-69 (301)
362 cd05564 PTS_IIB_chitobiose_lic 29.3 2.4E+02 0.0052 20.9 7.6 44 81-126 10-53 (96)
363 PRK09701 D-allose transporter 29.1 4E+02 0.0086 23.5 8.7 62 59-128 23-91 (311)
364 COG1167 ARO8 Transcriptional r 28.5 2.5E+02 0.0055 27.0 7.7 61 90-150 192-260 (459)
365 TIGR01839 PHA_synth_II poly(R) 28.5 1.6E+02 0.0035 29.5 6.4 68 88-170 237-304 (560)
366 COG0129 IlvD Dihydroxyacid deh 28.5 2E+02 0.0044 28.9 7.1 45 58-106 40-84 (575)
367 KOG2371 Molybdopterin biosynth 28.5 1.4E+02 0.003 28.5 5.5 77 57-133 186-268 (411)
368 TIGR02826 RNR_activ_nrdG3 anae 28.4 1.1E+02 0.0023 24.9 4.5 27 120-150 62-88 (147)
369 PF00885 DMRL_synthase: 6,7-di 28.3 2.3E+02 0.005 23.0 6.3 89 59-161 2-106 (144)
370 cd03142 GATase1_ThuA Type 1 gl 28.2 2.5E+02 0.0053 24.4 6.9 117 84-211 22-141 (215)
371 KOG2585 Uncharacterized conser 28.0 2.3E+02 0.005 27.5 7.1 65 55-130 261-327 (453)
372 COG0771 MurD UDP-N-acetylmuram 27.9 2.3E+02 0.005 27.5 7.3 46 88-133 20-83 (448)
373 TIGR02482 PFKA_ATP 6-phosphofr 27.9 80 0.0017 28.9 3.9 41 122-169 3-43 (301)
374 cd06290 PBP1_LacI_like_9 Ligan 27.8 2.3E+02 0.005 23.8 6.7 44 85-128 16-64 (265)
375 PRK15395 methyl-galactoside AB 27.1 4.6E+02 0.0099 23.5 8.9 62 60-129 24-91 (330)
376 PRK15408 autoinducer 2-binding 26.9 4.6E+02 0.01 23.8 8.9 81 62-161 25-111 (336)
377 COG1830 FbaB DhnA-type fructos 26.7 2.2E+02 0.0047 25.8 6.4 56 93-150 174-230 (265)
378 PRK08811 uroporphyrinogen-III 26.5 1.1E+02 0.0023 27.3 4.5 43 88-130 31-80 (266)
379 cd02071 MM_CoA_mut_B12_BD meth 26.3 3E+02 0.0065 21.1 7.0 55 92-149 21-77 (122)
380 PRK02399 hypothetical protein; 26.2 2.1E+02 0.0046 27.5 6.6 100 57-182 183-296 (406)
381 TIGR03609 S_layer_CsaB polysac 25.8 2.5E+02 0.0055 24.8 6.8 50 81-131 12-76 (298)
382 cd03143 A4_beta-galactosidase_ 25.7 2.3E+02 0.0049 22.4 5.9 39 87-132 28-66 (154)
383 PRK10339 DNA-binding transcrip 25.5 4.7E+02 0.01 23.0 8.6 62 59-128 62-123 (327)
384 PF03709 OKR_DC_1_N: Orn/Lys/A 25.4 2.2E+02 0.0049 21.7 5.6 69 88-163 7-75 (115)
385 TIGR00288 conserved hypothetic 25.4 3.5E+02 0.0077 22.5 7.0 63 88-162 69-136 (160)
386 PRK06703 flavodoxin; Provision 25.0 3.4E+02 0.0074 21.3 9.7 42 81-125 13-54 (151)
387 PRK10401 DNA-binding transcrip 24.3 3.3E+02 0.0071 24.3 7.3 62 59-128 58-124 (346)
388 cd06307 PBP1_uncharacterized_s 24.3 4.2E+02 0.009 22.4 7.8 68 83-161 14-89 (275)
389 PRK04690 murD UDP-N-acetylmura 24.3 3.1E+02 0.0067 26.4 7.5 18 88-105 21-38 (468)
390 PRK08005 epimerase; Validated 24.1 2.7E+02 0.0058 24.1 6.3 39 89-127 97-136 (210)
391 PRK05452 anaerobic nitric oxid 24.0 4.6E+02 0.01 25.5 8.7 80 81-161 263-345 (479)
392 PRK09932 glycerate kinase II; 23.9 86 0.0019 29.8 3.4 44 113-162 278-323 (381)
393 PRK05234 mgsA methylglyoxal sy 23.8 3.2E+02 0.007 22.0 6.4 77 91-172 42-123 (142)
394 TIGR01319 glmL_fam conserved h 23.7 3.1E+02 0.0067 26.9 7.2 47 85-131 84-132 (463)
395 TIGR01140 L_thr_O3P_dcar L-thr 23.4 3.7E+02 0.008 24.1 7.5 59 89-150 98-158 (330)
396 PRK05989 cobN cobaltochelatase 23.0 3.7E+02 0.008 29.7 8.4 94 61-172 202-304 (1244)
397 PF04016 DUF364: Domain of unk 23.0 71 0.0015 25.9 2.4 54 90-147 23-86 (147)
398 PRK15453 phosphoribulokinase; 22.8 1.8E+02 0.004 26.6 5.2 39 59-107 4-42 (290)
399 PF01927 Mut7-C: Mut7-C RNAse 22.8 1.6E+02 0.0034 23.7 4.4 41 88-129 10-50 (147)
400 PRK05718 keto-hydroxyglutarate 22.5 2.6E+02 0.0056 24.2 6.0 100 58-175 13-130 (212)
401 TIGR01755 flav_wrbA NAD(P)H:qu 22.5 3.2E+02 0.0069 22.9 6.5 65 81-146 12-94 (197)
402 TIGR00640 acid_CoA_mut_C methy 22.3 4E+02 0.0086 21.1 8.4 61 87-150 18-81 (132)
403 PF01081 Aldolase: KDPG and KH 22.2 2.5E+02 0.0055 24.0 5.8 104 60-183 8-129 (196)
404 PRK14057 epimerase; Provisiona 21.8 4.1E+02 0.0088 23.8 7.2 39 89-127 114-162 (254)
405 COG1570 XseA Exonuclease VII, 21.8 2.4E+02 0.0052 27.4 6.0 84 58-159 133-229 (440)
406 cd06303 PBP1_LuxPQ_Quorum_Sens 21.7 4.5E+02 0.0096 22.5 7.5 43 86-128 18-69 (280)
407 TIGR03436 acidobact_VWFA VWFA- 21.7 2E+02 0.0043 25.5 5.3 36 122-164 168-203 (296)
408 COG1929 Glycerate kinase [Carb 21.6 95 0.0021 29.4 3.2 44 113-162 278-323 (378)
409 PRK11041 DNA-binding transcrip 21.6 4.1E+02 0.0089 22.9 7.3 63 58-128 33-100 (309)
410 COG0426 FpaA Uncharacterized f 21.5 4.4E+02 0.0095 25.2 7.7 47 83-130 260-307 (388)
411 cd06325 PBP1_ABC_uncharacteriz 21.5 5E+02 0.011 21.9 9.9 68 88-164 150-220 (281)
412 PRK01355 azoreductase; Reviewe 21.5 4.8E+02 0.01 21.7 7.9 41 60-106 2-44 (199)
413 cd00363 PFK Phosphofructokinas 21.3 1.3E+02 0.0028 27.9 4.1 41 122-169 4-44 (338)
414 PRK10017 colanic acid biosynth 21.2 6.8E+02 0.015 24.0 9.1 16 116-131 114-129 (426)
415 cd00763 Bacterial_PFK Phosphof 21.2 1.3E+02 0.0028 27.8 4.0 41 122-169 4-44 (317)
416 CHL00200 trpA tryptophan synth 21.1 5E+02 0.011 23.2 7.7 76 90-169 136-219 (263)
417 cd02067 B12-binding B12 bindin 21.0 3.7E+02 0.0079 20.2 7.6 57 90-149 19-77 (119)
418 TIGR01182 eda Entner-Doudoroff 21.0 2.5E+02 0.0055 24.2 5.5 88 58-163 6-109 (204)
419 PRK06696 uridine kinase; Valid 20.6 2.5E+02 0.0054 23.8 5.5 37 59-105 21-57 (223)
420 PRK13055 putative lipid kinase 20.5 5.3E+02 0.011 23.5 7.9 43 88-130 23-70 (334)
421 TIGR00196 yjeF_cterm yjeF C-te 20.5 3.7E+02 0.0079 23.6 6.7 51 111-170 84-134 (272)
422 PF08937 DUF1863: MTH538 TIR-l 20.4 95 0.0021 24.2 2.6 44 114-165 65-109 (130)
423 COG0800 Eda 2-keto-3-deoxy-6-p 20.2 2.5E+02 0.0053 24.6 5.3 108 58-184 11-135 (211)
424 PF00920 ILVD_EDD: Dehydratase 20.2 83 0.0018 31.2 2.6 97 60-171 1-120 (521)
425 PF02602 HEM4: Uroporphyrinoge 20.0 1.6E+02 0.0035 24.7 4.2 42 89-130 2-53 (231)
426 TIGR02257 cobalto_cobN cobalto 20.0 4.6E+02 0.0099 28.7 8.2 65 59-130 190-261 (1122)
No 1
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.8e-51 Score=352.64 Aligned_cols=242 Identities=58% Similarity=0.997 Sum_probs=220.1
Q ss_pred CCccchHHHHHhhhccchhhhhhcccccchhhhhhccccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCCCCCCCC
Q 025574 1 MWGYLWIPILFSLSKEFSSVEAQSKILLPSQRQRQQNDAVSSLSVLVPRCPVPDSKLNYRPVIGIVTHPGDGASGRLNNA 80 (250)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PvIGI~~~~~~~~~~~~~~~ 80 (250)
||++++++.|.++.....+......|+||+|.+.+.| +++.|.+|+|++++||||||+++|+++.++|+.++
T Consensus 1 m~~~~~~~~l~~~~~S~~~~~~~~~ilLps~~g~e~S--------RspvcsapdpnlnykPvIGIL~hpg~g~~~rl~n~ 72 (340)
T KOG1559|consen 1 MWRFLFFLSLLFFMASPGALLCAESILLPSQAGFELS--------RSPVCSAPDPNLNYKPVIGILSHPGDGASGRLKNA 72 (340)
T ss_pred CcchHHHHHHHHhccChHHHHHHhheecccccccccc--------cCccccCCCCCcccCceeEEeccCCCCccceeccc
Confidence 8886665555544344457778899999999998755 68999999999999999999999999999999888
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEc
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILG 160 (250)
..++||++||||.+|..||||+|+.++++++.+..+++.+||||+|||+.....|++..+.+++++++++|+|+|+||+|
T Consensus 73 t~~~yIAASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg 152 (340)
T KOG1559|consen 73 TGRSYIAASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYG 152 (340)
T ss_pred cCcchhHHHHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhccCCccccchhh
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred ccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc---------
Q 025574 161 HCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT--------- 231 (250)
Q Consensus 161 IClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~--------- 231 (250)
||+||++|.++..-..++++.++..+..++++|+.++..++++|+++|+++++.|+.+++++++|.|+++|
T Consensus 153 ~CLGFE~lsmiISqnrdile~~d~vd~AssLqF~~nvn~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gisp~nF~~N~~L 232 (340)
T KOG1559|consen 153 ICLGFELLSMIISQNRDILERFDAVDVASSLQFVGNVNIHGTMFQRFPPELLKKLSTDCLVMQNHKFGISPKNFQGNPAL 232 (340)
T ss_pred hhhhHHHHHHHHhcChhHHHhhcccccccceeeecccceeehhHhhCCHHHHHHhccchheeeccccccchhhccCCHHH
Confidence 99999999999874346899999989999999988777689999999999999999999999999999998
Q ss_pred ---ceEEEEeecCCCeEEEeeC
Q 025574 232 ---INLLSTSVARFNCLKILKL 250 (250)
Q Consensus 232 ---f~vlA~s~D~~g~~Fvs~~ 250 (250)
|+|++|+.|.++.+|||.+
T Consensus 233 s~FFnilTT~~D~~~k~fvSTv 254 (340)
T KOG1559|consen 233 SSFFNILTTCTDGNSKTFVSTV 254 (340)
T ss_pred HHHHhheeeecCCCceEEEEee
Confidence 8999999998899999974
No 2
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=100.00 E-value=3.2e-34 Score=257.07 Aligned_cols=184 Identities=43% Similarity=0.696 Sum_probs=158.0
Q ss_pred EEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCC-CC-ccchHHHH
Q 025574 63 IGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWA-KD-GLYYAIVE 140 (250)
Q Consensus 63 IGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~-~~-~~~~~~~~ 140 (250)
|||+++|.+... ......+|++++|+++++++|+++++++++.+.+.+++.++.+||||+|||+. .+ ..|.+..+
T Consensus 1 igil~~~~~~~~---~~~~~~~yi~~~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~ 77 (273)
T cd01747 1 IGILTQPVDGAG---SNKTGHSYIAASYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSGYARTAK 77 (273)
T ss_pred CeEEeeecCccc---cccchhHHHHHHHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCccccchHHH
Confidence 899999986432 23467899999999999999999999998866788888899999999999974 32 35666667
Q ss_pred HHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccc
Q 025574 141 KVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCL 220 (250)
Q Consensus 141 ~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~ 220 (250)
.+++.+++.+++|+++||||||+|||+|+.++||+...+...+.++...++++++... .++||+++|+++.+.+.+++.
T Consensus 78 ~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~~~gg~~~~~~~~~~~~~~~~l~~t~~~~-~s~lF~~~p~~l~~~l~~~~~ 156 (273)
T cd01747 78 IIYNLALERNDAGDYFPVWGTCLGFELLTYLTSGETLLLEATEATNSALPLNFTEDAL-QSRLFKRFPPDLLKSLATEPL 156 (273)
T ss_pred HHHHHHHHhhhcCCCCcEEEEcHHHHHHHHHhCCCccccCCCccccceEEEEEccccc-cChhhhcCCHHHHHHHhcccH
Confidence 8999999999999999999999999999999999755556667788889999987544 789999999999999999999
Q ss_pred eeeeecccccc------------ceEEEEeecCCCeEEEeeC
Q 025574 221 VMQNHHVRPCT------------INLLSTSVARFNCLKILKL 250 (250)
Q Consensus 221 v~~~Hs~~V~~------------f~vlA~s~D~~g~~Fvs~~ 250 (250)
+|++|+|++++ |+++|++.|++|.+||+++
T Consensus 157 ~~~~Hs~~v~~~~~~~~~~l~~~~~vla~~~d~~g~~fis~i 198 (273)
T cd01747 157 TMNNHRYGISPENFTENGLLSDFFNVLTTNDDWNGVEFISTV 198 (273)
T ss_pred HHhhcccccCHhhcccccccccceEEEEEEecCCCceEEEEE
Confidence 99999999964 5899999887899999975
No 3
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.96 E-value=3.7e-30 Score=223.77 Aligned_cols=176 Identities=27% Similarity=0.375 Sum_probs=114.9
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCC-CCCccchHH-
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGW-AKDGLYYAI- 138 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~-~~~~~~~~~- 138 (250)
|+|||++++....... ......+|++++|+++++++|++++++|+..+.+.++..++.+||||||||. +++|.+|+.
T Consensus 1 PvIGI~~~~~~~~~~~-~~~~~~~~i~~~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~ 79 (217)
T PF07722_consen 1 PVIGITAQPSESDSSD-FPGYPRSYIAASYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEE 79 (217)
T ss_dssp -EEEEE-EE----SHH-HHHC-SEEEEHHHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT--
T ss_pred CEEEEeCCccccccCC-cCchhHHHHhHHHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCc
Confidence 8999999996422111 2356789999999999999999999999998899999999999999999999 787766643
Q ss_pred ----------HHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcc--cccccccC--------CCceeeeeeeecCC
Q 025574 139 ----------VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDK--NILESFNA--------ADQASTLQFMENTS 198 (250)
Q Consensus 139 ----------~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~--~~l~~~~~--------~~~~~pi~~~~~~~ 198 (250)
.++.++.++.++..++++||||||+|||+|++++||+. ++...... ....+++...+
T Consensus 80 ~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~~GGtl~q~~~~~~~~~~~~~~~~~~~~h~v~i~~--- 156 (217)
T PF07722_consen 80 PSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNVAFGGTLYQDIPDQPGFPDHRQHPQDFPSHPVRIVP--- 156 (217)
T ss_dssp -BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHHHCCSSEESCCCCSS-EEECEE-S-TS--EEEEEET---
T ss_pred ccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHHhCCCceeecccCcCcccccccccccccccceecc---
Confidence 24667777777777778999999999999999999982 11110000 11122333321
Q ss_pred CCCcccccCChhhhhhcCCccceeeeecccccc----ceEEEEeecCCCeEEEee
Q 025574 199 IEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT----INLLSTSVARFNCLKILK 249 (250)
Q Consensus 199 ~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~----f~vlA~s~D~~g~~Fvs~ 249 (250)
++.|.+-+. .++..++++|||+|++ |+++|++.| ++.++++.
T Consensus 157 -~s~l~~~~~-------~~~~~vns~Hhq~v~~l~~~l~v~A~s~D-g~iEaie~ 202 (217)
T PF07722_consen 157 -GSLLAKILG-------SEEIEVNSFHHQAVKPLGEGLRVTARSPD-GVIEAIES 202 (217)
T ss_dssp -TSTCCCTSH-------HCTEEEEEEECEEECCHHCCEEEEEEECT-SSEEEEEE
T ss_pred -CchHHHHhC-------cCcceeecchhhhhhccCCCceEEEEecC-CcEEEEEE
Confidence 233332221 1456789999999998 999999975 88899875
No 4
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.92 E-value=4.7e-25 Score=191.59 Aligned_cols=165 Identities=22% Similarity=0.307 Sum_probs=123.5
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchH
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA 137 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~ 137 (250)
++||+|||++.......+ +++...+|....|++++..+|+.++.+|...+.+.+...++.+||||||||.+++|.+|+
T Consensus 1 ~~kpvIGIt~~~~~~~~~--~~~~~~~~~~~~yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg~nV~P~~YG 78 (243)
T COG2071 1 MSKPVIGITADLIQEIVG--FDGNPWSYLPYDYVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGGSNVDPSLYG 78 (243)
T ss_pred CCCCEEEEecchhccccc--cCCccHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCCCcCCHHHcC
Confidence 479999999988765433 355678889999999999999999999977678888888999999999999777666654
Q ss_pred H---------------HH-HHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCc--ccccccc--cCC-------Cceee
Q 025574 138 I---------------VE-KVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKD--KNILESF--NAA-------DQAST 190 (250)
Q Consensus 138 ~---------------~~-~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~--~~~l~~~--~~~-------~~~~p 190 (250)
. .+ .+++.|++++ +||||||||+|+||+++||+ +++.+.. ..| ..+++
T Consensus 79 ee~~~~~~~~~p~RD~~E~aLi~~ALe~~-----iPILgICRG~QllNVa~GGtL~q~i~~~~~~~~H~~~~~~~~~~H~ 153 (243)
T COG2071 79 EEPSEKDGPYDPERDAFELALIRAALERG-----IPILGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHE 153 (243)
T ss_pred CCCCcccCCCCccccHHHHHHHHHHHHcC-----CCEEEEccchHHHHHHhcCeeehhhhcccccccccCCCCcccceeE
Confidence 2 22 8899999999 99999999999999999998 2222100 011 11333
Q ss_pred eeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc----ceEEEEeec
Q 025574 191 LQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT----INLLSTSVA 240 (250)
Q Consensus 191 i~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~----f~vlA~s~D 240 (250)
++..+ .+.|.+-+++. +..++++|+++++. |+|+|++.|
T Consensus 154 V~i~~----~s~La~i~g~~-------~~~VNS~HhQaIk~La~~L~V~A~a~D 196 (243)
T COG2071 154 VHIEP----GSKLAKILGES-------EFMVNSFHHQAIKKLAPGLVVEARAPD 196 (243)
T ss_pred EEecC----CccHHHhcCcc-------ceeecchHHHHHHHhCCCcEEEEECCC
Confidence 33322 45565544321 14688899999987 999999965
No 5
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.88 E-value=2e-22 Score=179.12 Aligned_cols=108 Identities=20% Similarity=0.331 Sum_probs=83.8
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC-ChhhHHHhcccCCEEEECCCC-CCCccc
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGW-AKDGLY 135 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dgvIlpGG~-~~~~~~ 135 (250)
++||+|||+++.... .....+++...|+++++++|+.++++++.. +.+.+.+.++.+|||||+||+ +++|.+
T Consensus 5 m~~P~Igi~~~~~~~------~~~~~~~~~~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~ 78 (254)
T PRK11366 5 MNNPVIGVVMCRNRL------KGHATQTLQEKYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHL 78 (254)
T ss_pred CCCCEEEEeCCCccc------CcchHHHHHHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhh
Confidence 579999999865321 123456789999999999999999998653 345566677889999999996 554432
Q ss_pred hH-------------HH-HHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcc
Q 025574 136 YA-------------IV-EKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDK 176 (250)
Q Consensus 136 ~~-------------~~-~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~ 176 (250)
|+ .. ..+++.+++++ +||||||+|||+|+.++||+.
T Consensus 79 yg~~~~~~~~~~~rD~~e~~li~~a~~~~-----~PILGICrG~Qllnva~GGtl 128 (254)
T PRK11366 79 YGENGDEPDADPGRDLLSMALINAALERR-----IPIFAICRGLQELVVATGGSL 128 (254)
T ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHCC-----CCEEEECHhHHHHHHHhCCeE
Confidence 21 11 27888888888 999999999999999999983
No 6
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.84 E-value=8.6e-21 Score=161.19 Aligned_cols=142 Identities=16% Similarity=0.142 Sum_probs=98.0
Q ss_pred HHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHH----HHHHHHHHhCCCCCCceEEccc
Q 025574 87 AASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVE----KVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 87 ~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~----~li~~~~~~~~~g~~~PILGIC 162 (250)
.+|..++++++|+++++.. ++++ ++++|+|||||.+++...+....+ +.++...+.+ +|+||||
T Consensus 14 L~Sv~~Aler~G~~~~vs~---d~~~----i~~AD~liLPGVGaf~~am~~L~~~gl~~~i~~~~~~~-----kP~LGIC 81 (204)
T COG0118 14 LRSVKKALERLGAEVVVSR---DPEE----ILKADKLILPGVGAFGAAMANLRERGLIEAIKEAVESG-----KPFLGIC 81 (204)
T ss_pred HHHHHHHHHHcCCeeEEec---CHHH----HhhCCEEEecCCCCHHHHHHHHHhcchHHHHHHHHhcC-----CCEEEEe
Confidence 4688899999999887753 4554 668999999999998766665432 4444444466 9999999
Q ss_pred chhHHHHHH--hcCcccccccccC-------CCceee-eeeeec-CCCCCcccccCChhhhhhcCCccceeeeecccccc
Q 025574 163 LGFELLTMI--ISKDKNILESFNA-------ADQAST-LQFMEN-TSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT 231 (250)
Q Consensus 163 lG~QlL~~~--~GG~~~~l~~~~~-------~~~~~p-i~~~~~-~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~ 231 (250)
+|||+|... +++...+|+.+++ ...+.| +.|+.. ...+++||+++|+ ...+||+|||++.+
T Consensus 82 lGMQlLfe~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGWN~l~~~~~~~l~~gi~~--------~~~~YFVHSY~~~~ 153 (204)
T COG0118 82 LGMQLLFERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGWNQVEFVRGHPLFKGIPD--------GAYFYFVHSYYVPP 153 (204)
T ss_pred HhHHhhhhcccccCCCCCcceecceEEEcCCCCCCCCccccceeeccCCChhhcCCCC--------CCEEEEEEEEeecC
Confidence 999999985 4433345654432 222333 245431 1125677777763 35799999999986
Q ss_pred ---ceEEEEeecCCCeEEEeeC
Q 025574 232 ---INLLSTSVARFNCLKILKL 250 (250)
Q Consensus 232 ---f~vlA~s~D~~g~~Fvs~~ 250 (250)
-.+++++ | ||.+|+|+|
T Consensus 154 ~~~~~v~~~~-~-YG~~f~AaV 173 (204)
T COG0118 154 GNPETVVATT-D-YGEPFPAAV 173 (204)
T ss_pred CCCceEEEec-c-CCCeeEEEE
Confidence 5666765 5 887799986
No 7
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.78 E-value=1.3e-18 Score=148.16 Aligned_cols=134 Identities=14% Similarity=0.230 Sum_probs=93.5
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEc
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILG 160 (250)
.+++|... ++++|++.|..+.+++++.. .. +.++.+||||++||++. +..+....++++. ++.+ +|+||
T Consensus 9 ~~dsf~~~-i~~~l~~~g~~~~v~~~~~~--~~-~~l~~~d~iIi~gGp~~-~~~~~~~~~~i~~-~~~~-----~PiLG 77 (190)
T PRK06895 9 NHDSFTFN-LVDLIRKLGVPMQVVNVEDL--DL-DEVENFSHILISPGPDV-PRAYPQLFAMLER-YHQH-----KSILG 77 (190)
T ss_pred CCCchHHH-HHHHHHHcCCcEEEEECCcc--Ch-hHhccCCEEEECCCCCC-hHHhhHHHHHHHH-hcCC-----CCEEE
Confidence 45677665 88999999999988886531 11 23668999999999984 3333333455554 4556 99999
Q ss_pred ccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc------ceE
Q 025574 161 HCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT------INL 234 (250)
Q Consensus 161 IClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~------f~v 234 (250)
||+|||+|+.++||++..... ..++...++... . +++||+++|+.+ .+|++|+|.+++ +.+
T Consensus 78 IClG~Qlla~~~Gg~V~~~~~-~~~g~~~~v~~~---~-~~~l~~~~~~~~--------~v~~~Hs~~v~~~~lp~~l~~ 144 (190)
T PRK06895 78 VCLGHQTLCEFFGGELYNLNN-VRHGQQRPLKVR---S-NSPLFDGLPEEF--------NIGLYHSWAVSEENFPTPLEI 144 (190)
T ss_pred EcHHHHHHHHHhCCeEeecCC-CccCceEEEEEC---C-CChhhhcCCCce--------EEEcchhheecccccCCCeEE
Confidence 999999999999998532222 234444444432 2 578999887654 489999999962 777
Q ss_pred EEEe
Q 025574 235 LSTS 238 (250)
Q Consensus 235 lA~s 238 (250)
+|++
T Consensus 145 ~a~~ 148 (190)
T PRK06895 145 TAVC 148 (190)
T ss_pred EEEC
Confidence 7766
No 8
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.78 E-value=1.1e-18 Score=147.97 Aligned_cols=130 Identities=18% Similarity=0.300 Sum_probs=94.8
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHH
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~Ql 167 (250)
.++++++++.|+++.+++++.+.+++... ++||||+|||+.. .+......+++.+++.+ +|+||||+|||+
T Consensus 12 ~~l~~~l~~~g~~~~~~~~~~~~~~~~~~--~~~glii~Gg~~~--~~~~~~~~~i~~~~~~~-----~PilGIC~G~Ql 82 (188)
T TIGR00888 12 QLIARRLRELGVYSELVPNTTPLEEIREK--NPKGIILSGGPSS--VYAENAPRADEKIFELG-----VPVLGICYGMQL 82 (188)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHhhc--CCCEEEECCCCCC--cCcCCchHHHHHHHhCC-----CCEEEECHHHHH
Confidence 45778999999999999988766665432 3569999999873 12222246778888888 999999999999
Q ss_pred HHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc----ceEEEEeec
Q 025574 168 LTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT----INLLSTSVA 240 (250)
Q Consensus 168 L~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~----f~vlA~s~D 240 (250)
|+.++||++. .....+.+..++..+. .++||.++|+.+ .++++|+|++.. ++++|++.+
T Consensus 83 l~~~lgg~v~--~~~~~~~g~~~v~~~~----~~~l~~~~~~~~--------~~~~~H~~~v~~l~~~~~vla~~~~ 145 (188)
T TIGR00888 83 MAKQLGGEVG--RAEKREYGKAELEILD----EDDLFRGLPDES--------TVWMSHGDKVKELPEGFKVLATSDN 145 (188)
T ss_pred HHHhcCceEe--cCCCccceeEEEEEec----CCHhhcCCCCCc--------EEEeEccceeecCCCCCEEEEECCC
Confidence 9999999842 2222344555565433 457888887543 478899999863 899998854
No 9
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.78 E-value=2.5e-18 Score=145.28 Aligned_cols=137 Identities=12% Similarity=0.194 Sum_probs=102.0
Q ss_pred CCcchhhHHHHHHHHHHcCCeEEEeecC-CChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceE
Q 025574 80 ATNASYIAASYVKFVESAGARVIPLIYN-EPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (250)
Q Consensus 80 ~~~~~~i~~s~v~~le~~G~~~v~i~~~-~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PI 158 (250)
+.++||.. .+++++++.|+++.+++.+ .+.+.++ ..+.|+|+++.||.. |.-.+...++++++ ..+ +||
T Consensus 8 DNyDSFty-NLv~yl~~lg~~v~V~rnd~~~~~~~~--~~~pd~iviSPGPG~-P~d~G~~~~~i~~~-~~~-----~Pi 77 (191)
T COG0512 8 DNYDSFTY-NLVQYLRELGAEVTVVRNDDISLELIE--ALKPDAIVISPGPGT-PKDAGISLELIRRF-AGR-----IPI 77 (191)
T ss_pred ECccchHH-HHHHHHHHcCCceEEEECCccCHHHHh--hcCCCEEEEcCCCCC-hHHcchHHHHHHHh-cCC-----CCE
Confidence 36788876 4899999999999998876 2333222 235899999999984 44333345777777 556 999
Q ss_pred EcccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc------c
Q 025574 159 YAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT------I 232 (250)
Q Consensus 159 LGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~------f 232 (250)
||||||||.|+.++||++. ..+...|+....++. . .+.+|+++|+++ .+..|||..+.+ |
T Consensus 78 LGVCLGHQai~~~fGg~V~-~a~~~~HGK~s~i~h----~-g~~iF~glp~~f--------~v~RYHSLvv~~~~lP~~l 143 (191)
T COG0512 78 LGVCLGHQAIAEAFGGKVV-RAKEPMHGKTSIITH----D-GSGLFAGLPNPF--------TVTRYHSLVVDPETLPEEL 143 (191)
T ss_pred EEECccHHHHHHHhCCEEE-ecCCCcCCeeeeeec----C-CcccccCCCCCC--------EEEeeEEEEecCCCCCCce
Confidence 9999999999999999853 233456776664432 1 467999999776 488999998876 9
Q ss_pred eEEEEeec
Q 025574 233 NLLSTSVA 240 (250)
Q Consensus 233 ~vlA~s~D 240 (250)
+|+|++.|
T Consensus 144 ~vtA~~~d 151 (191)
T COG0512 144 EVTAESED 151 (191)
T ss_pred EEEEEeCC
Confidence 99999955
No 10
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.77 E-value=1.6e-18 Score=147.60 Aligned_cols=105 Identities=28% Similarity=0.427 Sum_probs=81.2
Q ss_pred EEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccch------
Q 025574 63 IGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY------ 136 (250)
Q Consensus 63 IGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~------ 136 (250)
|||+++...... .....+|+..+++++|+++|+++++++++.+.+.++..++.+||||||||++..+..+
T Consensus 1 ~gi~~~~~~~~~----~~~~~~~~~~~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~ 76 (189)
T cd01745 1 IGITARLREEEG----GYERRDYLNQYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHP 76 (189)
T ss_pred CEEcCccccccC----ccHHHHHHHHHHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCc
Confidence 688887644321 2234788999999999999999999998876666666678899999999997543211
Q ss_pred -------H---HHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcc
Q 025574 137 -------A---IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDK 176 (250)
Q Consensus 137 -------~---~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~ 176 (250)
. ...++++.+++.+ +||||||+|||+|+.++||+.
T Consensus 77 ~~~~~~~~r~~~~~~~~~~~~~~~-----~PilgiC~G~Q~l~~~~Gg~v 121 (189)
T cd01745 77 ELGPIDPERDAFELALLRAALERG-----KPILGICRGMQLLNVALGGTL 121 (189)
T ss_pred ccCCCChhHHHHHHHHHHHHHHCC-----CCEEEEcchHHHHHHHhCCeE
Confidence 1 1236778888878 999999999999999999983
No 11
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.77 E-value=2.1e-18 Score=146.73 Aligned_cols=136 Identities=13% Similarity=0.103 Sum_probs=94.8
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCC-ChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEE
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PIL 159 (250)
.++||.. +++++|++.|+.+.++++++ +.+++.. .++|+||++|||.. |........+++. ++.+ +|+|
T Consensus 7 n~Dsft~-nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iils~GPg~-p~~~~~~~~~~~~-~~~~-----~PiL 76 (187)
T PRK08007 7 NYDSFTW-NLYQYFCELGADVLVKRNDALTLADIDA--LKPQKIVISPGPCT-PDEAGISLDVIRH-YAGR-----LPIL 76 (187)
T ss_pred CCCccHH-HHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCEEEEcCCCCC-hHHCCccHHHHHH-hcCC-----CCEE
Confidence 5677765 58899999999999998874 4444432 26899999999983 3222222355665 3556 9999
Q ss_pred cccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc------ce
Q 025574 160 AHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT------IN 233 (250)
Q Consensus 160 GIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~------f~ 233 (250)
|||+|||+|+.++||+.... ....++...++... .+.+|+++|.. ..++++|++.|.+ ++
T Consensus 77 GIClG~Q~la~a~Gg~v~~~-~~~~~g~~~~v~~~-----~~~l~~~~~~~--------~~v~~~H~~~v~~~~lp~~~~ 142 (187)
T PRK08007 77 GVCLGHQAMAQAFGGKVVRA-AKVMHGKTSPITHN-----GEGVFRGLANP--------LTVTRYHSLVVEPDSLPACFE 142 (187)
T ss_pred EECHHHHHHHHHcCCEEEeC-CCcccCCceEEEEC-----CCCcccCCCCC--------cEEEEcchhEEccCCCCCCeE
Confidence 99999999999999985322 22234444555432 34588877643 3589999999952 89
Q ss_pred EEEEeec
Q 025574 234 LLSTSVA 240 (250)
Q Consensus 234 vlA~s~D 240 (250)
++|++.|
T Consensus 143 v~a~~~~ 149 (187)
T PRK08007 143 VTAWSET 149 (187)
T ss_pred EEEEeCC
Confidence 9998843
No 12
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.77 E-value=7.5e-18 Score=156.47 Aligned_cols=155 Identities=16% Similarity=0.252 Sum_probs=108.8
Q ss_pred ccccccccCCCCCCCCC----CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhc
Q 025574 42 SLSVLVPRCPVPDSKLN----YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKL 117 (250)
Q Consensus 42 ~~~~~~~~~~~~~~~~~----~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l 117 (250)
.+++..|||..+.+... ..+.|.|+-.- +..+++++|+++|+++++++++.+.+++..
T Consensus 155 ~~~v~~vs~~~~~~~~~~~~~~~~~I~viD~G----------------~k~nivr~L~~~G~~v~vvp~~~~~~~i~~-- 216 (360)
T PRK12564 155 LDLVKEVSTKEPYPWPGPGGELKYKVVAIDFG----------------VKRNILRELAERGCRVTVVPATTTAEEILA-- 216 (360)
T ss_pred cCCcceeCCCCCEECCCCCCCCCCEEEEEeCC----------------cHHHHHHHHHHCCCEEEEEeCCCCHHHHHh--
Confidence 46789999998754422 13566665421 235799999999999999999876666543
Q ss_pred ccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcccccccccCCCceeeeeeeecC
Q 025574 118 ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENT 197 (250)
Q Consensus 118 ~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~ 197 (250)
.++|||||+||+. +|.......++++++++.+ +|+||||+|||+|+.++||++..+ ++..++..+|+....
T Consensus 217 ~~~DGIvLSgGPg-dp~~~~~~~~~i~~~~~~~-----~PilGIClG~QlLa~a~Gg~v~kl-~~gh~G~~~pv~~~~-- 287 (360)
T PRK12564 217 LNPDGVFLSNGPG-DPAALDYAIEMIRELLEKK-----IPIFGICLGHQLLALALGAKTYKM-KFGHRGANHPVKDLE-- 287 (360)
T ss_pred cCCCEEEEeCCCC-ChHHHHHHHHHHHHHHHcC-----CeEEEECHHHHHHHHHhCCcEecc-CCCccCCceeeEECC--
Confidence 2699999999987 3433333447888888877 999999999999999999985322 344444455554321
Q ss_pred CCCCcccccCChhhhhhcCCccceeeeecccccc------ceEEEEeec
Q 025574 198 SIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT------INLLSTSVA 240 (250)
Q Consensus 198 ~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~------f~vlA~s~D 240 (250)
..+. ..+.++|+|+|++ +++++++.+
T Consensus 288 --~~~~---------------~its~~H~~~V~~~~lp~~l~v~a~~~~ 319 (360)
T PRK12564 288 --TGKV---------------EITSQNHGFAVDEDSLPANLEVTHVNLN 319 (360)
T ss_pred --CCcE---------------EEEecCcccEEcccccCCceEEEEEeCC
Confidence 1111 2467799999963 899998854
No 13
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.77 E-value=9.9e-18 Score=145.00 Aligned_cols=147 Identities=13% Similarity=0.167 Sum_probs=99.9
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEc
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILG 160 (250)
.+++|.. ++++.|++.|+.+++++++.+.+++.. .++||||++|||.. +.......++++.+. .+ +||||
T Consensus 9 ~~dsf~~-nl~~~l~~~g~~~~v~~~~~~~~~l~~--~~~~~iIlsgGPg~-~~d~~~~~~li~~~~-~~-----~PiLG 78 (208)
T PRK05637 9 NHDSFVY-NLVDAFAVAGYKCTVFRNTVPVEEILA--ANPDLICLSPGPGH-PRDAGNMMALIDRTL-GQ-----IPLLG 78 (208)
T ss_pred CCcCHHH-HHHHHHHHCCCcEEEEeCCCCHHHHHh--cCCCEEEEeCCCCC-HHHhhHHHHHHHHHh-CC-----CCEEE
Confidence 4566664 588999999999999998766565532 37899999999983 211122235555443 35 99999
Q ss_pred ccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhh----hhcCCccceeeeecccccc----c
Q 025574 161 HCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLI----KKLSTDCLVMQNHHVRPCT----I 232 (250)
Q Consensus 161 IClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~----~~l~~~~~v~~~Hs~~V~~----f 232 (250)
||+|||+|+.++||++... ...++...++.++.... .+++|.++|.... ..++.+..++.+|++.|.. +
T Consensus 79 IClG~Qlla~alGG~V~~~--~~~~G~~~~i~~~~~~~-~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v~~lp~~~ 155 (208)
T PRK05637 79 ICLGFQALLEHHGGKVEPC--GPVHGTTDNMILTDAGV-QSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGCVVAPDGM 155 (208)
T ss_pred EcHHHHHHHHHcCCeeccC--CcccceEEEeEECCCCC-CCcccCCCCcccccccccccCCceEEEEechhhhhcCCCCe
Confidence 9999999999999985321 12334444455544322 5679998873221 1223345689999999875 9
Q ss_pred eEEEEeec
Q 025574 233 NLLSTSVA 240 (250)
Q Consensus 233 ~vlA~s~D 240 (250)
+++|++.+
T Consensus 156 ~vlA~s~~ 163 (208)
T PRK05637 156 ESLGTCSS 163 (208)
T ss_pred EEEEEecC
Confidence 99998854
No 14
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.76 E-value=4e-18 Score=145.14 Aligned_cols=136 Identities=14% Similarity=0.132 Sum_probs=91.6
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCC-ChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEE
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PIL 159 (250)
.++||.. ++++.|++.|+++.+++++. +.+++.. .++|+||++||+.. +........+++. ++.+ +|||
T Consensus 7 ~~dsf~~-nl~~~l~~~~~~~~v~~~~~~~~~~~~~--~~~~~iilsgGP~~-~~~~~~~~~~i~~-~~~~-----~PiL 76 (191)
T PRK06774 7 NYDSFTY-NLYQYFCELGTEVMVKRNDELQLTDIEQ--LAPSHLVISPGPCT-PNEAGISLAVIRH-FADK-----LPIL 76 (191)
T ss_pred CCCchHH-HHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCeEEEcCCCCC-hHhCCCchHHHHH-hcCC-----CCEE
Confidence 4677764 58899999999999998763 4555433 26899999999973 2111112245554 3556 9999
Q ss_pred cccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeeccccc----c--ce
Q 025574 160 AHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPC----T--IN 233 (250)
Q Consensus 160 GIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~----~--f~ 233 (250)
|||+|||+|+.++||++.-... .+.+...+... . .+++|+++|.. ..+|++|++.+. + ++
T Consensus 77 GIC~G~Qlla~~~GG~v~~~~~--~~~G~~~~~~~---~-~~~lf~~l~~~--------~~v~~~Hs~~v~~~~lp~~~~ 142 (191)
T PRK06774 77 GVCLGHQALGQAFGARVVRARQ--VMHGKTSAICH---S-GQGVFRGLNQP--------LTVTRYHSLVIAADSLPGCFE 142 (191)
T ss_pred EECHHHHHHHHHhCCEEEeCCc--ceecceEEEEe---c-CchhhcCCCCC--------cEEEEeCcceeeccCCCCCeE
Confidence 9999999999999998532211 12222233221 1 45688877643 358999999984 2 89
Q ss_pred EEEEeec
Q 025574 234 LLSTSVA 240 (250)
Q Consensus 234 vlA~s~D 240 (250)
++|++.+
T Consensus 143 vlA~s~~ 149 (191)
T PRK06774 143 LTAWSER 149 (191)
T ss_pred EEEEeCC
Confidence 9999843
No 15
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.76 E-value=9.5e-18 Score=155.63 Aligned_cols=156 Identities=15% Similarity=0.207 Sum_probs=107.4
Q ss_pred ccccccccCCCCCCCCC----CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhc
Q 025574 42 SLSVLVPRCPVPDSKLN----YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKL 117 (250)
Q Consensus 42 ~~~~~~~~~~~~~~~~~----~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l 117 (250)
.+++..|||..+..... .++.|.|+-.- +..+++++|++.|++++++|++.+.+++..
T Consensus 151 ~~~v~~vs~~~~~~~~~~~~~~~~~i~viD~G----------------~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~-- 212 (358)
T TIGR01368 151 INLVAEVSTKEPYTWGQKRGGKKKRVVVIDFG----------------VKQNILRRLVKRGCEVTVVPYDTDAEEIKK-- 212 (358)
T ss_pred CCccceeccCCCEEeCCCCCCCccEEEEEeCC----------------cHHHHHHHHHHCCCEEEEEcCCCCHHHHHh--
Confidence 36788999997765432 23577776431 124689999999999999998876555432
Q ss_pred ccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcccccccccCCCceeeeeeeecC
Q 025574 118 ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENT 197 (250)
Q Consensus 118 ~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~ 197 (250)
..+|||||+||+. +|.......++++++++ + +||||||+|||+|+.++||++.. .++..++..+|+....
T Consensus 213 ~~pDGIiLSgGPg-dp~~~~~~i~~i~~~~~-~-----~PILGIClG~QlLa~a~Gg~v~k-l~~gh~G~nhpV~~~~-- 282 (358)
T TIGR01368 213 YNPDGIFLSNGPG-DPAAVEPAIETIRKLLE-K-----IPIFGICLGHQLLALAFGAKTYK-MKFGHRGGNHPVKDLI-- 282 (358)
T ss_pred hCCCEEEECCCCC-CHHHHHHHHHHHHHHHc-C-----CCEEEECHHHHHHHHHhCCceec-cCcCcCCCceeeEECC--
Confidence 1469999999987 34333333467777776 6 99999999999999999998432 2344455555554211
Q ss_pred CCCCcccccCChhhhhhcCCccceeeeecccccc-------ceEEEEeecCC
Q 025574 198 SIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT-------INLLSTSVARF 242 (250)
Q Consensus 198 ~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~-------f~vlA~s~D~~ 242 (250)
..++| .+.++|+|+|.+ |++++++.+++
T Consensus 283 --~~~v~---------------itsqnH~~aV~~~~l~~~~l~vta~~~nDg 317 (358)
T TIGR01368 283 --TGRVE---------------ITSQNHGYAVDPDSLPAGDLEVTHVNLNDG 317 (358)
T ss_pred --CCcEE---------------EeecCCCcEEcccccCCCceEEEEEECCCC
Confidence 22232 356789999963 89999885433
No 16
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.76 E-value=4.4e-18 Score=142.97 Aligned_cols=129 Identities=17% Similarity=0.255 Sum_probs=91.1
Q ss_pred HHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHH
Q 025574 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELL 168 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL 168 (250)
++.++|+++|+.+++++++.+.+. ..++++||||+|||+... +......+.+++++.+ +|+||||+|||+|
T Consensus 13 ~~~~~l~~~G~~~~~~~~~~~~~~--~~~~~~dgvIl~Gg~~~~--~~~~~~~~~~~~~~~~-----~PilGIC~G~Qll 83 (181)
T cd01742 13 LIARRVRELGVYSEILPNTTPLEE--IKLKNPKGIILSGGPSSV--YEEDAPRVDPEIFELG-----VPVLGICYGMQLI 83 (181)
T ss_pred HHHHHHHhcCceEEEecCCCChhh--hcccCCCEEEECCCcccc--cccccchhhHHHHhcC-----CCEEEEcHHHHHH
Confidence 477899999999999998765442 246789999999998621 1111123445556667 9999999999999
Q ss_pred HHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc----ceEEEEeec
Q 025574 169 TMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT----INLLSTSVA 240 (250)
Q Consensus 169 ~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~----f~vlA~s~D 240 (250)
+.++||++. .....+.+..++... . .+++|+++|..+ .++++|++.|.. ++++|++.+
T Consensus 84 ~~~~gg~v~--~~~~~~~G~~~v~~~---~-~~~l~~~~~~~~--------~~~~~H~~~v~~l~~~~~~la~~~~ 145 (181)
T cd01742 84 AKALGGKVE--RGDKREYGKAEIEID---D-SSPLFEGLPDEQ--------TVWMSHGDEVVKLPEGFKVIASSDN 145 (181)
T ss_pred HHhcCCeEE--eCCCCcceEEEEEec---C-CChhhcCCCCce--------EEEcchhhhhhhcCCCcEEEEeCCC
Confidence 999999742 222234445555432 2 567998887543 578899999963 899998843
No 17
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.76 E-value=7.1e-18 Score=146.41 Aligned_cols=137 Identities=12% Similarity=0.172 Sum_probs=95.7
Q ss_pred chhhHHHHHHHHHHcCCeEEEeecCCCh-hhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 83 ASYIAASYVKFVESAGARVIPLIYNEPE-DVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 83 ~~~i~~s~v~~le~~G~~~v~i~~~~~~-~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
++|.. .+++++++.|+++++++++.+. +...+.++.+|||||+||+.. +........+++.+++++ +|||||
T Consensus 10 ~~~~~-~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~-~~~~~~~~~~i~~~~~~~-----~PiLGI 82 (214)
T PRK07765 10 DSFVF-NLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGT-PERAGASIDMVRACAAAG-----TPLLGV 82 (214)
T ss_pred CcHHH-HHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCC-hhhcchHHHHHHHHHhCC-----CCEEEE
Confidence 34443 5889999999999999987531 233444568999999999973 322222337888888888 999999
Q ss_pred cchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeeccccc----c--ceEE
Q 025574 162 CLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPC----T--INLL 235 (250)
Q Consensus 162 ClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~----~--f~vl 235 (250)
|+|||+|+.++||++.. .....++...++..+ .+.+|.+++.. ..++++|+|.+. + ++++
T Consensus 83 C~G~Qlla~a~GG~v~~-~~~~~~g~~~~v~~~-----~~~~~~~~~~~--------~~v~~~H~~~v~~~~lp~~~~vl 148 (214)
T PRK07765 83 CLGHQAIGVAFGATVDR-APELLHGKTSSVHHT-----GVGVLAGLPDP--------FTATRYHSLTILPETLPAELEVT 148 (214)
T ss_pred ccCHHHHHHHhCCEEee-CCCCccCceeEEEEC-----CCccccCCCCc--------cEEEecchheEecccCCCceEEE
Confidence 99999999999998431 122223333444432 23477776643 358899999994 2 8999
Q ss_pred EEeec
Q 025574 236 STSVA 240 (250)
Q Consensus 236 A~s~D 240 (250)
|++.|
T Consensus 149 a~s~~ 153 (214)
T PRK07765 149 ARTDS 153 (214)
T ss_pred EEcCC
Confidence 98844
No 18
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.75 E-value=8.5e-18 Score=143.03 Aligned_cols=136 Identities=12% Similarity=0.111 Sum_probs=94.3
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCC-ChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEE
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PIL 159 (250)
.++||.. ++++++++.|+.+++++++. +.+++.. ..+||||++||+.. +.-.....++++++ +.+ +|||
T Consensus 7 ~~dsft~-~~~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iilsgGpg~-p~~~~~~~~~i~~~-~~~-----~PvL 76 (188)
T TIGR00566 7 NYDSFTY-NLVQYFCELGAEVVVKRNDSLTLQEIEA--LLPLLIVISPGPCT-PNEAGISLEAIRHF-AGK-----LPIL 76 (188)
T ss_pred CCcCHHH-HHHHHHHHcCCceEEEECCCCCHHHHHh--cCCCEEEEcCCCCC-hhhcchhHHHHHHh-ccC-----CCEE
Confidence 5677765 58999999999999988653 4455433 25899999999973 21111224667766 456 9999
Q ss_pred cccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc------ce
Q 025574 160 AHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT------IN 233 (250)
Q Consensus 160 GIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~------f~ 233 (250)
|||+|||+|+.++||++... ....+++..++..+ .+.+|.+++.. ..++++|++.|.+ ++
T Consensus 77 GIC~G~Qll~~~~GG~v~~~-~~~~~g~~~~v~~~-----~~~~~~~l~~~--------~~v~~~H~~~v~~~~l~~~~~ 142 (188)
T TIGR00566 77 GVCLGHQAMGQAFGGDVVRA-NTVMHGKTSEIEHN-----GAGIFRGLFNP--------LTATRYHSLVVEPETLPTCFP 142 (188)
T ss_pred EECHHHHHHHHHcCCEEeeC-CCccccceEEEEEC-----CCccccCCCCC--------cEEEEcccceEecccCCCceE
Confidence 99999999999999985322 12234445556542 34477777643 3588999999842 89
Q ss_pred EEEEeec
Q 025574 234 LLSTSVA 240 (250)
Q Consensus 234 vlA~s~D 240 (250)
++|++.+
T Consensus 143 v~a~s~~ 149 (188)
T TIGR00566 143 VTAWEEE 149 (188)
T ss_pred EEEEcCC
Confidence 9998843
No 19
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.75 E-value=1.2e-17 Score=141.22 Aligned_cols=136 Identities=15% Similarity=0.205 Sum_probs=93.1
Q ss_pred cchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 82 NASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 82 ~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
+.+|.. .+++++++.|+++.+++++.+.+.+.+ ++++||||++||+.. +......+.+.+. ++.+ +|+|||
T Consensus 7 ~~~~~~-~~~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~dgvil~gG~~~-~~~~~~~~~i~~~-~~~~-----~PvlGI 77 (184)
T cd01743 7 YDSFTY-NLVQYLRELGAEVVVVRNDEITLEELE-LLNPDAIVISPGPGH-PEDAGISLEIIRA-LAGK-----VPILGV 77 (184)
T ss_pred CCccHH-HHHHHHHHcCCceEEEeCCCCCHHHHh-hcCCCEEEECCCCCC-cccchhHHHHHHH-HhcC-----CCEEEE
Confidence 445543 488899999999999999876554333 578999999999873 1111122344444 3556 999999
Q ss_pred cchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc------ceEE
Q 025574 162 CLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT------INLL 235 (250)
Q Consensus 162 ClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~------f~vl 235 (250)
|+|||+|+.++||++. ......++...++..+ .+.+|+++|+. ..++++|+|.|+. ++++
T Consensus 78 C~G~Qlla~~~Gg~v~-~~~~~~~g~~~~v~~~-----~~~~~~~~~~~--------~~~~~~H~~~v~~~~~~~~~~~l 143 (184)
T cd01743 78 CLGHQAIAEAFGGKVV-RAPEPMHGKTSEIHHD-----GSGLFKGLPQP--------FTVGRYHSLVVDPDPLPDLLEVT 143 (184)
T ss_pred CHhHHHHHHHhCCEEE-eCCCCCcCceeEEEEC-----CCccccCCCCC--------cEEEeCcEEEEecCCCCceEEEE
Confidence 9999999999999843 2222233444455432 35688777644 3589999999965 5777
Q ss_pred EEeec
Q 025574 236 STSVA 240 (250)
Q Consensus 236 A~s~D 240 (250)
|++.+
T Consensus 144 a~~~~ 148 (184)
T cd01743 144 ASTED 148 (184)
T ss_pred EeCCC
Confidence 77743
No 20
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.75 E-value=9.6e-18 Score=142.54 Aligned_cols=134 Identities=13% Similarity=0.206 Sum_probs=91.6
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCC-ChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEE
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PIL 159 (250)
.+++|.. +++++|++.|.++.+++++. +.+.+.. + ++||||++||+.. +........+++.+ +.+ +|||
T Consensus 7 ~~d~f~~-~i~~~l~~~g~~~~v~~~~~~~~~~~~~-~-~~dglIlsgGpg~-~~d~~~~~~~l~~~-~~~-----~PvL 76 (189)
T PRK05670 7 NYDSFTY-NLVQYLGELGAEVVVYRNDEITLEEIEA-L-NPDAIVLSPGPGT-PAEAGISLELIREF-AGK-----VPIL 76 (189)
T ss_pred CCCchHH-HHHHHHHHCCCcEEEEECCCCCHHHHHh-C-CCCEEEEcCCCCC-hHHcchHHHHHHHh-cCC-----CCEE
Confidence 3466754 58999999999999999874 3334322 3 4899999999963 21112233566653 455 9999
Q ss_pred cccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeeccccc----c--ce
Q 025574 160 AHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPC----T--IN 233 (250)
Q Consensus 160 GIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~----~--f~ 233 (250)
|||+|||+|+.++||++... ....++...++. . . .+++|+++|.. ..++++|++.|. + ++
T Consensus 77 GIClG~Qlla~alGg~v~~~-~~~~~g~~~~v~-~---~-~~~l~~~~~~~--------~~v~~~H~~~v~~~~lp~~~~ 142 (189)
T PRK05670 77 GVCLGHQAIGEAFGGKVVRA-KEIMHGKTSPIE-H---D-GSGIFAGLPNP--------FTVTRYHSLVVDRESLPDCLE 142 (189)
T ss_pred EECHHHHHHHHHhCCEEEec-CCcccCceeEEE-e---C-CCchhccCCCC--------cEEEcchhheeccccCCCceE
Confidence 99999999999999984322 222233333443 1 2 45688877643 358999999994 2 89
Q ss_pred EEEEe
Q 025574 234 LLSTS 238 (250)
Q Consensus 234 vlA~s 238 (250)
++|++
T Consensus 143 ~la~s 147 (189)
T PRK05670 143 VTAWT 147 (189)
T ss_pred EEEEe
Confidence 99998
No 21
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.75 E-value=9.8e-18 Score=141.86 Aligned_cols=141 Identities=16% Similarity=0.223 Sum_probs=100.9
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEc
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILG 160 (250)
.+++|. .++++++++.|.++.+++++.+.+...+.++++||||++||+....+ ......+++++.+.+ +|+||
T Consensus 5 ~~~~~~-~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d-~~~~~~~i~~~~~~~-----~PilG 77 (192)
T PF00117_consen 5 NGDSFT-HSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYD-IEGLIELIREARERK-----IPILG 77 (192)
T ss_dssp SSHTTH-HHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTS-HHHHHHHHHHHHHTT-----SEEEE
T ss_pred CCHHHH-HHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCcccc-ccccccccccccccc-----eEEEE
Confidence 345665 46999999999999999887644433224789999999999984222 444558889998888 99999
Q ss_pred ccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeeccccc-----c--ce
Q 025574 161 HCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPC-----T--IN 233 (250)
Q Consensus 161 IClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~-----~--f~ 233 (250)
||+|||+|+.++||++.-....+..+...++..+. .+++|.++|+.+ .++++|++.|. | ++
T Consensus 78 IC~G~Q~la~~~G~~v~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~--------~~~~~H~~~v~~~~~~p~~~~ 145 (192)
T PF00117_consen 78 ICLGHQILAHALGGKVVPSPEKPHHGGNIPISETP----EDPLFYGLPESF--------KAYQYHSDAVNPDDLLPEGFE 145 (192)
T ss_dssp ETHHHHHHHHHTTHEEEEEESEEEEEEEEEEEEEE----EHGGGTTSTSEE--------EEEEEECEEEEEGHHHHTTEE
T ss_pred EeehhhhhHHhcCCccccccccccccccccccccc----cccccccccccc--------ccccccceeeecccccccccc
Confidence 99999999999999843111122233333343321 246888877554 58899999987 2 89
Q ss_pred EEEEeec
Q 025574 234 LLSTSVA 240 (250)
Q Consensus 234 vlA~s~D 240 (250)
++|++.+
T Consensus 146 ~la~s~~ 152 (192)
T PF00117_consen 146 VLASSSD 152 (192)
T ss_dssp EEEEETT
T ss_pred ccccccc
Confidence 9999943
No 22
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.74 E-value=3.7e-17 Score=137.78 Aligned_cols=124 Identities=19% Similarity=0.335 Sum_probs=86.9
Q ss_pred HHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHH
Q 025574 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELL 168 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL 168 (250)
+++++++++|+++++++++.+.+.+. ..++||||++||+. ++.......++++++++++ +|+||||+|||+|
T Consensus 11 ~~~~~l~~~G~~~~~~~~~~~~~~~~--~~~~dgiil~GG~~-~~~~~~~~~~~~~~~~~~~-----~PvlGIC~G~Q~l 82 (178)
T cd01744 11 NILRELLKRGCEVTVVPYNTDAEEIL--KLDPDGIFLSNGPG-DPALLDEAIKTVRKLLGKK-----IPIFGICLGHQLL 82 (178)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHh--hcCCCEEEECCCCC-ChhHhHHHHHHHHHHHhCC-----CCEEEECHHHHHH
Confidence 57899999999999999887655432 34799999999986 2322333447889998888 9999999999999
Q ss_pred HHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc------ceEEEEeec
Q 025574 169 TMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT------INLLSTSVA 240 (250)
Q Consensus 169 ~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~------f~vlA~s~D 240 (250)
+.++||+.... ....++...++.... .... ..++++|++++.+ ++++|++.+
T Consensus 83 ~~~~Gg~v~~~-~~~~~g~~~~v~~~~----~~~~---------------~~v~~~H~~~v~~~~lp~~~~v~a~s~~ 140 (178)
T cd01744 83 ALALGAKTYKM-KFGHRGSNHPVKDLI----TGRV---------------YITSQNHGYAVDPDSLPGGLEVTHVNLN 140 (178)
T ss_pred HHHcCCceecC-CCCCCCCceeeEEcC----CCCc---------------EEEEcCceEEEcccccCCceEEEEEECC
Confidence 99999984321 222223333443211 1111 1367799999952 999999854
No 23
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.74 E-value=2.4e-17 Score=140.69 Aligned_cols=135 Identities=13% Similarity=0.150 Sum_probs=90.8
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCC-ChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEE
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PIL 159 (250)
.++||.. ++++++++.|+.+.+++++. +.+.+.. .+.|+||++||+.. +.-......+++. ++.+ +|+|
T Consensus 7 ~~dsft~-~~~~~l~~~g~~~~~~~~~~~~~~~~~~--~~~~~iilsgGp~~-~~~~~~~~~~i~~-~~~~-----~PiL 76 (193)
T PRK08857 7 NYDSFTY-NLYQYFCELGAQVKVVRNDEIDIDGIEA--LNPTHLVISPGPCT-PNEAGISLQAIEH-FAGK-----LPIL 76 (193)
T ss_pred CCCCcHH-HHHHHHHHCCCcEEEEECCCCCHHHHhh--CCCCEEEEeCCCCC-hHHCcchHHHHHH-hcCC-----CCEE
Confidence 4577765 48999999999999999773 3333322 25799999999962 2111112355555 3556 9999
Q ss_pred cccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeeccccc----c--ce
Q 025574 160 AHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPC----T--IN 233 (250)
Q Consensus 160 GIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~----~--f~ 233 (250)
|||+|||+|+.++||++... ....++...++.. . .+.+|.++|.. ..++++|++++. + ++
T Consensus 77 GIClG~Qlia~a~Gg~v~~~-~~~~~G~~~~~~~----~-~~~l~~~~~~~--------~~v~~~H~~~v~~~~lp~~~~ 142 (193)
T PRK08857 77 GVCLGHQAIAQVFGGQVVRA-RQVMHGKTSPIRH----T-GRSVFKGLNNP--------LTVTRYHSLVVKNDTLPECFE 142 (193)
T ss_pred EEcHHHHHHHHHhCCEEEeC-CCceeCceEEEEE----C-CCcccccCCCc--------cEEEEccEEEEEcCCCCCCeE
Confidence 99999999999999984322 1122222233332 1 35688877644 358999999985 2 89
Q ss_pred EEEEee
Q 025574 234 LLSTSV 239 (250)
Q Consensus 234 vlA~s~ 239 (250)
++|++.
T Consensus 143 v~a~s~ 148 (193)
T PRK08857 143 LTAWTE 148 (193)
T ss_pred EEEEec
Confidence 999885
No 24
>PLN02335 anthranilate synthase
Probab=99.73 E-value=2.5e-17 Score=143.82 Aligned_cols=137 Identities=15% Similarity=0.211 Sum_probs=91.9
Q ss_pred cchhhHHHHHHHHHHcCCeEEEeecCC-ChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEc
Q 025574 82 NASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (250)
Q Consensus 82 ~~~~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILG 160 (250)
+++|.. .++++|++.|+.+.+++++. +.+.+. ..++|+||++|||.. +.-.+...++++. .. ..+||||
T Consensus 27 ~dsft~-~i~~~L~~~g~~~~v~~~~~~~~~~~~--~~~~d~iVisgGPg~-p~d~~~~~~~~~~-~~-----~~~PiLG 96 (222)
T PLN02335 27 YDSFTY-NLCQYMGELGCHFEVYRNDELTVEELK--RKNPRGVLISPGPGT-PQDSGISLQTVLE-LG-----PLVPLFG 96 (222)
T ss_pred CCCHHH-HHHHHHHHCCCcEEEEECCCCCHHHHH--hcCCCEEEEcCCCCC-hhhccchHHHHHH-hC-----CCCCEEE
Confidence 345543 58899999999999998763 333332 236899999999983 2111111122222 22 3399999
Q ss_pred ccchhHHHHHHhcCccccccccc-CCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc-------c
Q 025574 161 HCLGFELLTMIISKDKNILESFN-AADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT-------I 232 (250)
Q Consensus 161 IClG~QlL~~~~GG~~~~l~~~~-~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~-------f 232 (250)
||+|||+|+.++||+.. ..... .++...++.++.. . .++||+++|.. ..++++|+++|++ +
T Consensus 97 IClG~QlLa~alGg~v~-~~~~~~~~G~~~~v~~~~~-~-~~~Lf~~l~~~--------~~v~~~H~~~v~~~~lp~~~~ 165 (222)
T PLN02335 97 VCMGLQCIGEAFGGKIV-RSPFGVMHGKSSPVHYDEK-G-EEGLFSGLPNP--------FTAGRYHSLVIEKDTFPSDEL 165 (222)
T ss_pred ecHHHHHHHHHhCCEEE-eCCCccccCceeeeEECCC-C-CChhhhCCCCC--------CEEEechhheEecccCCCCce
Confidence 99999999999999843 22222 3445666665432 2 46799988754 3589999999963 8
Q ss_pred eEEEEee
Q 025574 233 NLLSTSV 239 (250)
Q Consensus 233 ~vlA~s~ 239 (250)
+++|++.
T Consensus 166 ~v~a~~~ 172 (222)
T PLN02335 166 EVTAWTE 172 (222)
T ss_pred EEEEEcC
Confidence 8888873
No 25
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.72 E-value=3.7e-17 Score=140.02 Aligned_cols=135 Identities=13% Similarity=0.190 Sum_probs=91.4
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCC-ChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEE
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PIL 159 (250)
.++||.. +++++|++.|..+.+++++. +.+.+.. .++||||++|||.. +.-......+++. ++.+ +|+|
T Consensus 7 n~dsft~-nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iIlsgGP~~-p~~~~~~~~~i~~-~~~~-----~PvL 76 (195)
T PRK07649 7 NYDSFTF-NLVQFLGELGQELVVKRNDEVTISDIEN--MKPDFLMISPGPCS-PNEAGISMEVIRY-FAGK-----IPIF 76 (195)
T ss_pred CCCccHH-HHHHHHHHCCCcEEEEeCCCCCHHHHhh--CCCCEEEECCCCCC-hHhCCCchHHHHH-hcCC-----CCEE
Confidence 4577765 58999999999999998773 3344332 36899999999973 2111112244443 2455 9999
Q ss_pred cccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeeccccc----c--ce
Q 025574 160 AHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPC----T--IN 233 (250)
Q Consensus 160 GIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~----~--f~ 233 (250)
|||+|||+|+.++||++... ....++...++.. . .+++|+++|..+ .++++|++.+. | ++
T Consensus 77 GIClG~Qlla~~lGg~V~~~-~~~~~G~~~~i~~----~-~~~lf~~~~~~~--------~v~~~H~~~v~~~~lp~~~~ 142 (195)
T PRK07649 77 GVCLGHQSIAQVFGGEVVRA-ERLMHGKTSLMHH----D-GKTIFSDIPNPF--------TATRYHSLIVKKETLPDCLE 142 (195)
T ss_pred EEcHHHHHHHHHcCCEEeeC-CCcccCCeEEEEE----C-CChhhcCCCCCC--------EEEEechheEecccCCCCeE
Confidence 99999999999999985322 2223343333321 1 356898887543 58999999883 2 89
Q ss_pred EEEEee
Q 025574 234 LLSTSV 239 (250)
Q Consensus 234 vlA~s~ 239 (250)
++|++.
T Consensus 143 ~~a~s~ 148 (195)
T PRK07649 143 VTSWTE 148 (195)
T ss_pred EEEEcC
Confidence 999883
No 26
>PRK00758 GMP synthase subunit A; Validated
Probab=99.72 E-value=2.5e-17 Score=139.23 Aligned_cols=124 Identities=15% Similarity=0.264 Sum_probs=85.9
Q ss_pred HHHHHHHHcCCeEEEeecCCChhhHHHhcccC-CEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHH
Q 025574 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELV-NGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~-dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~Ql 167 (250)
+++++++++|+++.+++++.+.++ ++++ ||||+|||++. .+.. .+.+.+.+.+ +||||||+|||+
T Consensus 14 ~i~~~l~~~g~~~~~~~~~~~~~~----l~~~~dgivi~Gg~~~--~~~~---~~~~~l~~~~-----~PilGIC~G~Q~ 79 (184)
T PRK00758 14 LIHRTLRYLGVDAKIIPNTTPVEE----IKAFEDGLILSGGPDI--ERAG---NCPEYLKELD-----VPILGICLGHQL 79 (184)
T ss_pred HHHHHHHHcCCcEEEEECCCCHHH----HhhcCCEEEECCCCCh--hhcc---ccHHHHHhCC-----CCEEEEeHHHHH
Confidence 477899999999999987765544 4456 99999999853 2222 1222332455 999999999999
Q ss_pred HHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc----ceEEEEeec
Q 025574 168 LTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT----INLLSTSVA 240 (250)
Q Consensus 168 L~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~----f~vlA~s~D 240 (250)
|+.++||++. .....+.+..++.++. .+.+|.++|+.+ .++++|++.+.. ++++|++.+
T Consensus 80 L~~a~Gg~v~--~~~~~~~g~~~i~~~~----~~~l~~~~~~~~--------~~~~~H~~~v~~l~~~~~~la~~~~ 142 (184)
T PRK00758 80 IAKAFGGEVG--RGEYGEYALVEVEILD----EDDILKGLPPEI--------RVWASHADEVKELPDGFEILARSDI 142 (184)
T ss_pred HHHhcCcEEe--cCCCceeeeEEEEEcC----CChhhhCCCCCc--------EEEeehhhhhhhCCCCCEEEEECCC
Confidence 9999999842 2112233344454432 456888777543 588999999864 899999844
No 27
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.71 E-value=5.5e-17 Score=138.98 Aligned_cols=136 Identities=13% Similarity=0.091 Sum_probs=88.6
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHH-HHHHHHHHhCCCCCCceEEcccchhH
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVE-KVFKKILEKNDAGDHFPLYAHCLGFE 166 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~-~li~~~~~~~~~g~~~PILGIClG~Q 166 (250)
.|+.++|++.|++++++. ++++ ++++|+|||||++.....+....+ .+++.+.+.+ +||||||+|||
T Consensus 14 ~s~~~~l~~~g~~~~~v~---~~~~----~~~~d~iIlPG~G~~~~~~~~l~~~~l~~~i~~~~-----~PilGIClG~Q 81 (196)
T PRK13170 14 SSVKFAIERLGYEPVVSR---DPDV----ILAADKLFLPGVGTAQAAMDQLRERELIDLIKACT-----QPVLGICLGMQ 81 (196)
T ss_pred HHHHHHHHHCCCeEEEEC---CHHH----hCCCCEEEECCCCchHHHHHHHHHcChHHHHHHcC-----CCEEEECHHHH
Confidence 468889999999888875 3333 567899999997764333222222 5667776666 99999999999
Q ss_pred HHHHHhcCc--cccccccc-------------CCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc
Q 025574 167 LLTMIISKD--KNILESFN-------------AADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT 231 (250)
Q Consensus 167 lL~~~~GG~--~~~l~~~~-------------~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~ 231 (250)
+|+.++++. ...++..+ .+.++.++.+. . ++++|+++|+ +..+|++|+|++.+
T Consensus 82 ll~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~p~~G~~~v~~~---~-~~~l~~~l~~--------~~~v~~~Hs~~lp~ 149 (196)
T PRK13170 82 LLGERSEESGGVDCLGIIDGPVKKMTDFGLPLPHMGWNQVTPQ---A-GHPLFQGIED--------GSYFYFVHSYAMPV 149 (196)
T ss_pred HHhhhcccCCCCCCcccccEEEEECCCCCCCCCccccceeEeC---C-CChhhhCCCc--------CCEEEEECeeecCC
Confidence 999997432 12222111 11222223221 1 4567777764 35699999999876
Q ss_pred -ceEEEEeecCCCeEEEee
Q 025574 232 -INLLSTSVARFNCLKILK 249 (250)
Q Consensus 232 -f~vlA~s~D~~g~~Fvs~ 249 (250)
..++|++ ++|..|+++
T Consensus 150 ~~~~la~s--~~~~~~~~~ 166 (196)
T PRK13170 150 NEYTIAQC--NYGEPFSAA 166 (196)
T ss_pred CCcEEEEe--cCCCeEEEE
Confidence 6677776 356777765
No 28
>CHL00101 trpG anthranilate synthase component 2
Probab=99.71 E-value=5.8e-17 Score=138.06 Aligned_cols=136 Identities=12% Similarity=0.131 Sum_probs=90.9
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCC-ChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEE
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PIL 159 (250)
.++||.. .++++|++.|.++.+++++. +.+.+. ...+||||++||+.. +...+....+++. ++.+ +|+|
T Consensus 7 ~~dsft~-~l~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiiisgGpg~-~~~~~~~~~i~~~-~~~~-----~PiL 76 (190)
T CHL00101 7 NYDSFTY-NLVQSLGELNSDVLVCRNDEIDLSKIK--NLNIRHIIISPGPGH-PRDSGISLDVISS-YAPY-----IPIL 76 (190)
T ss_pred CCCchHH-HHHHHHHhcCCCEEEEECCCCCHHHHh--hCCCCEEEECCCCCC-hHHCcchHHHHHH-hcCC-----CcEE
Confidence 4566653 58899999999999888763 333332 246899999999973 2111122345553 5566 9999
Q ss_pred cccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeeccccc----c--ce
Q 025574 160 AHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPC----T--IN 233 (250)
Q Consensus 160 GIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~----~--f~ 233 (250)
|||+|||+|+.++||++... ....++.+..+. . . .+++|+++|+.+ .++++|+|.|+ | ++
T Consensus 77 GIClG~Qlla~~~Gg~V~~~-~~~~~g~~~~~~-~---~-~~~l~~~~~~~~--------~v~~~H~~~v~~~~lp~~~~ 142 (190)
T CHL00101 77 GVCLGHQSIGYLFGGKIIKA-PKPMHGKTSKIY-H---N-HDDLFQGLPNPF--------TATRYHSLIIDPLNLPSPLE 142 (190)
T ss_pred EEchhHHHHHHHhCCEEEEC-CCcccCceeeEe-e---C-CcHhhccCCCce--------EEEcchhheeecccCCCceE
Confidence 99999999999999985322 122233332221 1 1 456888877543 58999999994 2 89
Q ss_pred EEEEeec
Q 025574 234 LLSTSVA 240 (250)
Q Consensus 234 vlA~s~D 240 (250)
++|++.|
T Consensus 143 vla~s~~ 149 (190)
T CHL00101 143 ITAWTED 149 (190)
T ss_pred EEEEcCC
Confidence 9998743
No 29
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.70 E-value=1.2e-16 Score=135.10 Aligned_cols=137 Identities=17% Similarity=0.214 Sum_probs=99.3
Q ss_pred HHHHHHHHHHcC---CeEEEeecCCChhhHHHhcccCCEEEECCCCCCC----ccchHHHHHHHHHHHHhCCCCCCceEE
Q 025574 87 AASYVKFVESAG---ARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD----GLYYAIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 87 ~~s~v~~le~~G---~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~----~~~~~~~~~li~~~~~~~~~g~~~PIL 159 (250)
...+.++++++| .++.++++..... ...++++||||++||+... ..|.....++++++++++ +|+|
T Consensus 13 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~-----~pil 85 (188)
T cd01741 13 PGLFEDLLREAGAETIEIDVVDVYAGEL--LPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAG-----KPVL 85 (188)
T ss_pred cchHHHHHHhcCCCCceEEEEecCCCCC--CCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCC-----CCEE
Confidence 356888999999 5787777665332 2347889999999998632 233344558888888888 9999
Q ss_pred cccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc----ceEE
Q 025574 160 AHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT----INLL 235 (250)
Q Consensus 160 GIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~----f~vl 235 (250)
|||+|||+|+.++||+.. ......+.+..++.++.... .+.+|+++|+.+ .++++|++.|.. ++++
T Consensus 86 giC~G~q~l~~~lGG~v~-~~~~~~~~g~~~v~~~~~~~-~~~l~~~~~~~~--------~v~~~H~~~v~~lp~~~~~l 155 (188)
T cd01741 86 GICLGHQLLARALGGKVG-RNPKGWEIGWFPVTLTEAGK-ADPLFAGLPDEF--------PVFHWHGDTVVELPPGAVLL 155 (188)
T ss_pred EECccHHHHHHHhCCEEe-cCCCcceeEEEEEEeccccc-cCchhhcCCCcc--------eEEEEeccChhhCCCCCEEe
Confidence 999999999999999842 22222255677777765433 466887776543 589999999984 8999
Q ss_pred EEeec
Q 025574 236 STSVA 240 (250)
Q Consensus 236 A~s~D 240 (250)
|++.+
T Consensus 156 a~~~~ 160 (188)
T cd01741 156 ASSEA 160 (188)
T ss_pred ecCCC
Confidence 98844
No 30
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.70 E-value=9e-17 Score=141.51 Aligned_cols=134 Identities=16% Similarity=0.224 Sum_probs=94.0
Q ss_pred HHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCC---CccchHHHHHHHHHHHHhCCCCCCceEEcccchhH
Q 025574 90 YVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK---DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~---~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~Q 166 (250)
+.+.+...|.....+...... .++ .+..+||||++||+.. +.+|.....++++.+++.+ +||||||+|||
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~-~~p-~~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~-----~PvlGIC~G~Q 99 (237)
T PRK09065 27 IRVALGLAEQPVVVVRVFAGE-PLP-APDDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAG-----MPLLGICYGHQ 99 (237)
T ss_pred HHHHhccCCceEEEEeccCCC-CCC-ChhhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCC-----CCEEEEChhHH
Confidence 334555567777666554322 222 2568999999999963 1234444568888888888 99999999999
Q ss_pred HHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc----ceEEEEeec
Q 025574 167 LLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT----INLLSTSVA 240 (250)
Q Consensus 167 lL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~----f~vlA~s~D 240 (250)
+|+.++||++. ......+.+..++.++.... .+++|+++|+.+ .++++|++.|.. ++++|++.+
T Consensus 100 lla~alGg~V~-~~~~g~e~G~~~v~~~~~~~-~~~l~~~~~~~~--------~v~~~H~d~v~~lp~~~~~la~s~~ 167 (237)
T PRK09065 100 LLAHALGGEVG-YNPAGRESGTVTVELHPAAA-DDPLFAGLPAQF--------PAHLTHLQSVLRLPPGAVVLARSAQ 167 (237)
T ss_pred HHHHHcCCccc-cCCCCCccceEEEEEccccc-cChhhhcCCccC--------cEeeehhhhhhhCCCCCEEEEcCCC
Confidence 99999999842 22233455667777765433 567898887554 488899999853 999998854
No 31
>PLN02347 GMP synthetase
Probab=99.70 E-value=1e-16 Score=155.78 Aligned_cols=139 Identities=15% Similarity=0.168 Sum_probs=98.4
Q ss_pred cchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCC--CccchHHHHHHHHHHHHhCCCCCCceEE
Q 025574 82 NASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--DGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 82 ~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~--~~~~~~~~~~li~~~~~~~~~g~~~PIL 159 (250)
+.+|. .+++++++++|..+++++++.+.+++.. .++||||||||+.. +.........+++.+.+.+ +|||
T Consensus 19 G~~~t-~~I~r~lrelgv~~~v~p~~~~~~~i~~--~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~-----iPIL 90 (536)
T PLN02347 19 GSQYT-HLITRRVRELGVYSLLLSGTASLDRIAS--LNPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERG-----VPVL 90 (536)
T ss_pred CCcHH-HHHHHHHHHCCCeEEEEECCCCHHHHhc--CCCCEEEECCCCCcccccCCchhhHHHHHHHHhcC-----CcEE
Confidence 34454 4578899999999999998877766543 26899999999863 1111122346677776667 9999
Q ss_pred cccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc----ceEE
Q 025574 160 AHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT----INLL 235 (250)
Q Consensus 160 GIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~----f~vl 235 (250)
|||+|||+|+.++||++... ...+.+..++++. . +++||+++|... ...+|++|++.+.. |+++
T Consensus 91 GIClG~QlLa~alGG~V~~~--~~~e~G~~~v~i~---~-~~~Lf~~l~~~~------~~~v~~~Hsd~V~~lP~g~~vl 158 (536)
T PLN02347 91 GICYGMQLIVQKLGGEVKPG--EKQEYGRMEIRVV---C-GSQLFGDLPSGE------TQTVWMSHGDEAVKLPEGFEVV 158 (536)
T ss_pred EECHHHHHHHHHcCCEEEec--CCcccceEEEEEc---C-CChhhhcCCCCc------eEEEEEEEEEEeeeCCCCCEEE
Confidence 99999999999999984321 2234555566542 2 567999887531 13589999998854 9999
Q ss_pred EEeec
Q 025574 236 STSVA 240 (250)
Q Consensus 236 A~s~D 240 (250)
|++.|
T Consensus 159 A~s~~ 163 (536)
T PLN02347 159 AKSVQ 163 (536)
T ss_pred EEeCC
Confidence 99843
No 32
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.69 E-value=3.7e-16 Score=146.75 Aligned_cols=127 Identities=17% Similarity=0.253 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhH
Q 025574 87 AASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (250)
Q Consensus 87 ~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~Q 166 (250)
..+++++|.+.|++++++|++.+.+++.. .++|||||+|||. +|.......+.+++++ .+ +||||||+|||
T Consensus 251 K~nIlr~L~~~G~~v~VvP~~~~~~ei~~--~~pDGIiLSnGPG-DP~~~~~~ie~ik~l~-~~-----iPIlGICLGhQ 321 (415)
T PLN02771 251 KHNILRRLASYGCKITVVPSTWPASEALK--MKPDGVLFSNGPG-DPSAVPYAVETVKELL-GK-----VPVFGICMGHQ 321 (415)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCHHHHhh--cCCCEEEEcCCCC-ChhHhhHHHHHHHHHH-hC-----CCEEEEcHHHH
Confidence 46788999999999999999877665542 3689999999987 3433333334555554 35 99999999999
Q ss_pred HHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc------ceEEEEeec
Q 025574 167 LLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT------INLLSTSVA 240 (250)
Q Consensus 167 lL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~------f~vlA~s~D 240 (250)
+|+.++||++.. .++..++...|+.... ..+++ .+.++|+|.|.+ +++++.+.+
T Consensus 322 lLa~AlGGkv~K-~~~Gh~G~n~pV~~~~----~~~v~---------------itsqnHg~aVd~~sLp~~~~vt~~nln 381 (415)
T PLN02771 322 LLGQALGGKTFK-MKFGHHGGNHPVRNNR----TGRVE---------------ISAQNHNYAVDPASLPEGVEVTHVNLN 381 (415)
T ss_pred HHHHhcCCeEEE-CCCCcccceEEEEECC----CCCEE---------------EEecCHHHhhccccCCCceEEEEEeCC
Confidence 999999998532 3455555566664221 12221 366899999964 899988754
Q ss_pred CC
Q 025574 241 RF 242 (250)
Q Consensus 241 ~~ 242 (250)
++
T Consensus 382 Dg 383 (415)
T PLN02771 382 DG 383 (415)
T ss_pred CC
Confidence 33
No 33
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.69 E-value=1.4e-16 Score=136.76 Aligned_cols=132 Identities=17% Similarity=0.241 Sum_probs=94.7
Q ss_pred HHHHHHHcC-CeEEEeecCCChhhHHHhcccCCEEEECCCCCC--Cc-cchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 90 YVKFVESAG-ARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--DG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 90 ~v~~le~~G-~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~--~~-~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
+.+++++.| ....+++++.+.+.++ ..+.||||++||+.. ++ .|......++..+...+ +||||||+||
T Consensus 17 i~r~~re~g~v~~e~~~~~~~~~~~~--~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~-----~pvLGIC~G~ 89 (198)
T COG0518 17 IARRLRELGYVYSEIVPYTGDAEELP--LDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPG-----KPVLGICLGH 89 (198)
T ss_pred HHHHHHHcCCceEEEEeCCCCccccc--ccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCC-----CCEEEEChhH
Confidence 557999999 7777778877666543 335699999999962 11 23333344555544444 7899999999
Q ss_pred HHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc----ceEEEEeec
Q 025574 166 ELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT----INLLSTSVA 240 (250)
Q Consensus 166 QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~----f~vlA~s~D 240 (250)
|+|+.++||++..- . ..+.++.+++.++ . .+.+|+++|+... .++.+|.+.++. |+++|+|..
T Consensus 90 Ql~A~~lGg~V~~~-~-~~E~G~~~v~~~~--~-~~~l~~gl~~~~~-------~v~~sH~D~v~~lP~g~~vlA~s~~ 156 (198)
T COG0518 90 QLLAKALGGKVERG-P-KREIGWTPVELTE--G-DDPLFAGLPDLFT-------TVFMSHGDTVVELPEGAVVLASSET 156 (198)
T ss_pred HHHHHHhCCEEecc-C-CCccceEEEEEec--C-ccccccCCccccC-------ccccchhCccccCCCCCEEEecCCC
Confidence 99999999985322 2 2677888888764 2 3479999886542 478899999984 999999843
No 34
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.68 E-value=4.2e-16 Score=142.17 Aligned_cols=129 Identities=16% Similarity=0.301 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
+.+++.+.|.+.|++++++|++.+.+++..+ +.|||+|+-||. +|.-....-..++..++.. +|++|||+|+
T Consensus 189 vK~nIlr~L~~rg~~vtVVP~~t~~eeIl~~--~pDGiflSNGPG-DP~~~~~~i~~ik~l~~~~-----iPifGICLGH 260 (368)
T COG0505 189 VKRNILRELVKRGCRVTVVPADTSAEEILAL--NPDGIFLSNGPG-DPAPLDYAIETIKELLGTK-----IPIFGICLGH 260 (368)
T ss_pred ccHHHHHHHHHCCCeEEEEcCCCCHHHHHhh--CCCEEEEeCCCC-ChhHHHHHHHHHHHHhccC-----CCeEEEcHHH
Confidence 4567888999999999999999988887543 799999999999 5544444446778888877 8999999999
Q ss_pred HHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc------ceEEEEee
Q 025574 166 ELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT------INLLSTSV 239 (250)
Q Consensus 166 QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~------f~vlA~s~ 239 (250)
|||+.++|+++.. -+|..++.++|+.-. . ..+++ ++-++|+|+|++ ++++-++.
T Consensus 261 QllalA~Ga~T~K-mkFGHrG~NhPV~dl---~-tgrv~---------------ITSQNHGyaVd~~s~~~~~~vth~nl 320 (368)
T COG0505 261 QLLALALGAKTYK-MKFGHRGANHPVKDL---D-TGRVY---------------ITSQNHGYAVDEDSLVETLKVTHVNL 320 (368)
T ss_pred HHHHHhcCCceee-cccCCCCCCcCcccc---c-CCeEE---------------EEecCCceecChhhcCCCceeEEEeC
Confidence 9999999998543 367777777777411 1 23332 467899999987 25777776
Q ss_pred cCC
Q 025574 240 ARF 242 (250)
Q Consensus 240 D~~ 242 (250)
+++
T Consensus 321 nDg 323 (368)
T COG0505 321 NDG 323 (368)
T ss_pred CCC
Confidence 644
No 35
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.67 E-value=4.5e-16 Score=137.53 Aligned_cols=136 Identities=17% Similarity=0.282 Sum_probs=91.3
Q ss_pred HHHHHHHHHcCCe---EEEeecCCChhhHHHhcccCCEEEECCCCCC--C-----ccchHHH----HHHHHHHHHhCCCC
Q 025574 88 ASYVKFVESAGAR---VIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--D-----GLYYAIV----EKVFKKILEKNDAG 153 (250)
Q Consensus 88 ~s~v~~le~~G~~---~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~--~-----~~~~~~~----~~li~~~~~~~~~g 153 (250)
..|.+++++.|.. +..+..... +.....++.+||||++||+.. + .+|.... ..+++.+++.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~--- 93 (242)
T PRK07567 18 AEYAAFLRYTGLDPAELRRIRLDRE-PLPDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARD--- 93 (242)
T ss_pred chHHHHHHhcCCCccceEEEecccC-CCCCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcC---
Confidence 4577788888865 444433322 111113678999999999852 1 2333222 24556666777
Q ss_pred CCceEEcccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc--
Q 025574 154 DHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT-- 231 (250)
Q Consensus 154 ~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~-- 231 (250)
+||||||+|||+|+.++||++. .....+.+..+++++.... .+++|.++|..+ .++++|++.|..
T Consensus 94 --~PvLGIC~G~Qlla~a~GG~V~--~~~g~e~G~~~v~l~~~g~-~~~l~~~~~~~~--------~~~~~H~d~V~~lp 160 (242)
T PRK07567 94 --FPFLGACYGVGTLGHHQGGVVD--RTYGEPVGAVTVSLTDAGR-ADPLLAGLPDTF--------TAFVGHKEAVSALP 160 (242)
T ss_pred --CCEEEEchhHHHHHHHcCCEEe--cCCCCcCccEEEEECCccC-CChhhcCCCCce--------EEEeehhhhhhhCC
Confidence 9999999999999999999843 2233455667777765433 567888887554 478899999853
Q ss_pred --ceEEEEeec
Q 025574 232 --INLLSTSVA 240 (250)
Q Consensus 232 --f~vlA~s~D 240 (250)
++++|++.+
T Consensus 161 ~~~~vlA~s~~ 171 (242)
T PRK07567 161 PGAVLLATSPT 171 (242)
T ss_pred CCCEEEEeCCC
Confidence 999999843
No 36
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.67 E-value=9.2e-16 Score=142.20 Aligned_cols=154 Identities=18% Similarity=0.249 Sum_probs=103.1
Q ss_pred ccccccccCCCCCCCCCCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCC
Q 025574 42 SLSVLVPRCPVPDSKLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVN 121 (250)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~d 121 (250)
.+++..|||..|.......+.|-++..- +..+++++|++.|+.+++++++.+.+++.. .++|
T Consensus 149 ~~~v~~vs~~~~~~~~~~~~~V~viD~G----------------~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~--~~~D 210 (354)
T PRK12838 149 KNVVAQVSTKEPYTYGNGGKHVALIDFG----------------YKKSILRSLSKRGCKVTVLPYDTSLEEIKN--LNPD 210 (354)
T ss_pred CCcccEEEcCCCEEeCCCCCEEEEECCC----------------HHHHHHHHHHHCCCeEEEEECCCCHHHHhh--cCCC
Confidence 4678899998876654444556554421 246789999999999999998876665543 3799
Q ss_pred EEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCC
Q 025574 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEG 201 (250)
Q Consensus 122 gvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s 201 (250)
||||+||++ +|........+++.+++ + +|+||||+|||+|+.++||++..+ ++..++..+|+.... .+
T Consensus 211 GIiLsgGPg-dp~~~~~~~~~i~~~~~-~-----~PvlGIClG~QlLa~a~Gg~v~kl-~~gh~G~~hpV~~~~----~~ 278 (354)
T PRK12838 211 GIVLSNGPG-DPKELQPYLPEIKKLIS-S-----YPILGICLGHQLIALALGADTEKL-PFGHRGANHPVIDLT----TG 278 (354)
T ss_pred EEEEcCCCC-ChHHhHHHHHHHHHHhc-C-----CCEEEECHHHHHHHHHhCCEEecC-CCCccCCceEEEECC----CC
Confidence 999999997 33222222245555542 3 899999999999999999985322 333445556664321 22
Q ss_pred cccccCChhhhhhcCCccceeeeecccccc-------ceEEEEeec
Q 025574 202 TVFQRFPPKLIKKLSTDCLVMQNHHVRPCT-------INLLSTSVA 240 (250)
Q Consensus 202 ~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~-------f~vlA~s~D 240 (250)
++| .+.++|+|+|.+ +++++++.+
T Consensus 279 ~~~---------------~ts~~H~~aV~~~sl~~~~l~v~a~~~~ 309 (354)
T PRK12838 279 RVW---------------MTSQNHGYVVDEDSLDGTPLSVRFFNVN 309 (354)
T ss_pred eEE---------------EeccchheEecccccCCCCcEEEEEECC
Confidence 222 245689999853 678887643
No 37
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.67 E-value=6e-16 Score=132.85 Aligned_cols=135 Identities=16% Similarity=0.128 Sum_probs=87.3
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchH-----HHHHHHHHHHHhCCCCCCceEEccc
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA-----IVEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~-----~~~~li~~~~~~~~~g~~~PILGIC 162 (250)
.|..++|++.|+++++++ ++++ ++++|+|||||+++....+.. ..+.+.+.+++.+ +||||||
T Consensus 13 ~~v~~~l~~~g~~~~~~~---~~~~----l~~~d~lilPG~g~~~~~~~~l~~~~~~~~l~~~~~~~~-----~pvlGiC 80 (201)
T PRK13152 13 NSVAKAFEKIGAINFIAK---NPKD----LQKADKLLLPGVGSFKEAMKNLKELGFIEALKEQVLVQK-----KPILGIC 80 (201)
T ss_pred HHHHHHHHHCCCeEEEEC---CHHH----HcCCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHHhCC-----CcEEEEC
Confidence 567889999999887765 2333 567999999999885332211 1235556666777 9999999
Q ss_pred chhHHHHHH--hcCccccccccc--------------CCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeec
Q 025574 163 LGFELLTMI--ISKDKNILESFN--------------AADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHH 226 (250)
Q Consensus 163 lG~QlL~~~--~GG~~~~l~~~~--------------~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs 226 (250)
+|||+|+.+ .||....++.++ .+.++.+++.. . +++||+++|+. ..+|++|+
T Consensus 81 ~G~Q~l~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~~~~~g~~~v~~~---~-~~~l~~~l~~~--------~~~~~vHS 148 (201)
T PRK13152 81 LGMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGWNELEIL---K-QSPLYQGIPEK--------SDFYFVHS 148 (201)
T ss_pred HhHHHHhhcccccCCcCCcccccEEEEECCCCCCCcCCccCeEEEEEC---C-CChhhhCCCCC--------CeEEEEcc
Confidence 999999997 344322232111 12233334322 2 56788877643 35899999
Q ss_pred ccccc--ceEEEEeecCCCeEEEe
Q 025574 227 VRPCT--INLLSTSVARFNCLKIL 248 (250)
Q Consensus 227 ~~V~~--f~vlA~s~D~~g~~Fvs 248 (250)
|.+.. ..+.+++. +|..+++
T Consensus 149 ~~v~~~~~~v~a~~~--~g~~~~~ 170 (201)
T PRK13152 149 FYVKCKDEFVSAKAQ--YGHKFVA 170 (201)
T ss_pred cEeecCCCcEEEEEC--CCCEEEE
Confidence 99975 67777773 3444553
No 38
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.66 E-value=4.3e-16 Score=150.98 Aligned_cols=130 Identities=15% Similarity=0.239 Sum_probs=92.3
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHH
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~Ql 167 (250)
..++++|+++|+.+.+++++.+.+++... ++||||||||+.. .|......+.+.+++.+ +||||||+|||+
T Consensus 17 ~li~r~lrelg~~~~v~p~~~~~~~l~~~--~~dgIIlsGGp~s--v~~~~~p~~~~~i~~~~-----~PvLGIC~G~Ql 87 (511)
T PRK00074 17 QLIARRVRELGVYSEIVPYDISAEEIRAF--NPKGIILSGGPAS--VYEEGAPRADPEIFELG-----VPVLGICYGMQL 87 (511)
T ss_pred HHHHHHHHHCCCeEEEEECCCCHHHHhcc--CCCEEEECCCCcc--cccCCCccccHHHHhCC-----CCEEEECHHHHH
Confidence 35778999999999999988776665432 5699999999872 11111112334556667 999999999999
Q ss_pred HHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc----ceEEEEeec
Q 025574 168 LTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT----INLLSTSVA 240 (250)
Q Consensus 168 L~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~----f~vlA~s~D 240 (250)
|+.++||++. .....+.+..++.++. +++||+++|.. ..+|++|++.|.. |+++|++.+
T Consensus 88 La~~lGG~V~--~~~~~e~G~~~i~i~~----~~~Lf~~l~~~--------~~v~~~H~d~V~~lp~g~~vlA~s~~ 150 (511)
T PRK00074 88 MAHQLGGKVE--RAGKREYGRAELEVDN----DSPLFKGLPEE--------QDVWMSHGDKVTELPEGFKVIASTEN 150 (511)
T ss_pred HHHHhCCeEE--ecCCcccceEEEEEcC----CChhhhcCCCc--------eEEEEECCeEEEecCCCcEEEEEeCC
Confidence 9999999842 2222344555665532 46788887643 3588899999964 999999944
No 39
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.66 E-value=1.3e-15 Score=142.36 Aligned_cols=81 Identities=19% Similarity=0.354 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHH
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~Ql 167 (250)
.+++++|+++|+++++++++.+.+++.. .++|||||+||+.. |.......+.++++++.+ +||||||+|||+
T Consensus 204 ~ni~~~L~~~G~~v~vvp~~~~~~~i~~--~~~dgIilSgGPg~-p~~~~~~i~~i~~~~~~~-----~PilGIClGhQl 275 (382)
T CHL00197 204 YNILRRLKSFGCSITVVPATSPYQDILS--YQPDGILLSNGPGD-PSAIHYGIKTVKKLLKYN-----IPIFGICMGHQI 275 (382)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCHHHHhc--cCCCEEEEcCCCCC-hhHHHHHHHHHHHHHhCC-----CCEEEEcHHHHH
Confidence 3588999999999999999887666543 26899999999873 433322334556666666 999999999999
Q ss_pred HHHHhcCcc
Q 025574 168 LTMIISKDK 176 (250)
Q Consensus 168 L~~~~GG~~ 176 (250)
|+.++||++
T Consensus 276 La~a~Gg~v 284 (382)
T CHL00197 276 LSLALEAKT 284 (382)
T ss_pred HHHHhCCEE
Confidence 999999984
No 40
>PRK13566 anthranilate synthase; Provisional
Probab=99.65 E-value=1.1e-15 Score=153.03 Aligned_cols=147 Identities=16% Similarity=0.294 Sum_probs=105.6
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchH
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA 137 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~ 137 (250)
...+.|.|+-+- +++ ..++.+++++.|+++++++++.+.+.++ ..++|||||+||+.. +...
T Consensus 524 ~~g~~IlvID~~-------------dsf-~~~l~~~Lr~~G~~v~vv~~~~~~~~~~--~~~~DgVVLsgGpgs-p~d~- 585 (720)
T PRK13566 524 GEGKRVLLVDHE-------------DSF-VHTLANYFRQTGAEVTTVRYGFAEEMLD--RVNPDLVVLSPGPGR-PSDF- 585 (720)
T ss_pred CCCCEEEEEECC-------------Cch-HHHHHHHHHHCCCEEEEEECCCChhHhh--hcCCCEEEECCCCCC-hhhC-
Confidence 344567776543 334 3468899999999999999887655443 247999999999873 2211
Q ss_pred HHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCC
Q 025574 138 IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLST 217 (250)
Q Consensus 138 ~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~ 217 (250)
....+++.+++++ +||||||+|||+|+.++||+...+ ..+.++...++..+. .+.||+++|+++
T Consensus 586 ~~~~lI~~a~~~~-----iPILGIClG~QlLa~alGG~V~~~-~~~~~G~~~~V~v~~----~~~Lf~~lp~~~------ 649 (720)
T PRK13566 586 DCKATIDAALARN-----LPIFGVCLGLQAIVEAFGGELGQL-AYPMHGKPSRIRVRG----PGRLFSGLPEEF------ 649 (720)
T ss_pred CcHHHHHHHHHCC-----CcEEEEehhHHHHHHHcCCEEEEC-CCCccCCceEEEECC----CCchhhcCCCCC------
Confidence 2357889988888 999999999999999999985322 223344455665532 457998887554
Q ss_pred ccceeeeecccccc------ceEEEEeec
Q 025574 218 DCLVMQNHHVRPCT------INLLSTSVA 240 (250)
Q Consensus 218 ~~~v~~~Hs~~V~~------f~vlA~s~D 240 (250)
.++++|++.+.. ++++|++.|
T Consensus 650 --~v~~~Hs~~v~~~~Lp~~~~vlA~s~d 676 (720)
T PRK13566 650 --TVGRYHSLFADPETLPDELLVTAETED 676 (720)
T ss_pred --EEEEecceeEeeccCCCceEEEEEeCC
Confidence 589999987642 899999844
No 41
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.65 E-value=5.3e-16 Score=134.40 Aligned_cols=142 Identities=15% Similarity=0.144 Sum_probs=88.0
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHH----HHHHHHHHHhCCCCCCceEEcccc
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIV----EKVFKKILEKNDAGDHFPLYAHCL 163 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~----~~li~~~~~~~~~g~~~PILGICl 163 (250)
.+++++++.+|+++++++. +++ ++++|+||+||+++.++.+.... ...++.+++.+ +|+||||+
T Consensus 15 ~sl~~al~~~g~~v~vv~~---~~~----l~~~d~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~~~-----~pvlGICl 82 (210)
T CHL00188 15 HSVSRAIQQAGQQPCIINS---ESE----LAQVHALVLPGVGSFDLAMKKLEKKGLITPIKKWIAEG-----NPFIGICL 82 (210)
T ss_pred HHHHHHHHHcCCcEEEEcC---HHH----hhhCCEEEECCCCchHHHHHHHHHCCHHHHHHHHHHcC-----CCEEEECH
Confidence 5788999999999988753 232 56799999999887543332221 13344445566 99999999
Q ss_pred hhHHHHHHhcCc-ccccccccC--------------CCceeeeeeeecCCC--CCcccccCChhhhhhcCCccceeeeec
Q 025574 164 GFELLTMIISKD-KNILESFNA--------------ADQASTLQFMENTSI--EGTVFQRFPPKLIKKLSTDCLVMQNHH 226 (250)
Q Consensus 164 G~QlL~~~~GG~-~~~l~~~~~--------------~~~~~pi~~~~~~~~--~s~Lf~~lp~~~~~~l~~~~~v~~~Hs 226 (250)
|||+|+...++. ...++.++. |.++.+++++.+... ++.||+++|+. ..+|++|+
T Consensus 83 G~Qll~~~~~~~~~~glg~~~G~v~~~~~~~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~--------~~v~~~HS 154 (210)
T CHL00188 83 GLHLLFETSEEGKEEGLGIYKGQVKRLKHSPVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLN--------PWAYFVHS 154 (210)
T ss_pred HHHHHhhccccCCcCCccceeEEEEECCCCCCCccCccCCccceecCCcccccCChhhcCCCCC--------CEEEEeCc
Confidence 999999875442 222322211 113333333221110 14578777654 46999999
Q ss_pred ccccc--ceEEEEeecCCC-eEEEeeC
Q 025574 227 VRPCT--INLLSTSVARFN-CLKILKL 250 (250)
Q Consensus 227 ~~V~~--f~vlA~s~D~~g-~~Fvs~~ 250 (250)
|.+.+ ...++.+.. ++ ..|++++
T Consensus 155 ~~v~p~~~~~l~~t~~-~~~~~~v~a~ 180 (210)
T CHL00188 155 YGVMPKSQACATTTTF-YGKQQMVAAI 180 (210)
T ss_pred cEecCCCCceEEEEEe-cCCcceEEEE
Confidence 99965 566666644 44 5677663
No 42
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.64 E-value=7.5e-16 Score=133.23 Aligned_cols=137 Identities=17% Similarity=0.174 Sum_probs=84.3
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccch--H---HHHHHHHHHHHhCCCCCCceEEccc
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY--A---IVEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~--~---~~~~li~~~~~~~~~g~~~PILGIC 162 (250)
.+++++|++.|+++ .+.+..++++ ++++|+||+||++.....+. . ..+.+++.+.+.+ +|+||||
T Consensus 15 ~s~~~al~~~g~~~-~v~~~~~~~~----l~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~PvlGiC 84 (209)
T PRK13146 15 RSAAKALERAGAGA-DVVVTADPDA----VAAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAG-----RPFLGIC 84 (209)
T ss_pred HHHHHHHHHcCCCc-cEEEECCHHH----hcCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCC-----CcEEEEC
Confidence 57889999999954 2222334444 67899999999876422211 1 1234556555566 9999999
Q ss_pred chhHHHHHH------------hcCcccccccc-----cCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeee
Q 025574 163 LGFELLTMI------------ISKDKNILESF-----NAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNH 225 (250)
Q Consensus 163 lG~QlL~~~------------~GG~~~~l~~~-----~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~H 225 (250)
+|||+|+.+ ++|++...... ..+.++.++... . ++++|+++|+. ..+|++|
T Consensus 85 ~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~~~~~~p~~G~~~v~~~---~-~~~lf~~~~~~--------~~v~~~H 152 (209)
T PRK13146 85 VGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDGPALKVPHMGWNTVDQT---R-DHPLFAGIPDG--------ARFYFVH 152 (209)
T ss_pred HHHHHHhhcccccCCCCCcceEeEEEEEcCCCCCCCccCccChHHeeeC---C-CChhccCCCCC--------CEEEEEe
Confidence 999999998 33432111000 011222233221 2 56788888754 3589999
Q ss_pred cccccc---ceEEEEeecCCCeEEEe
Q 025574 226 HVRPCT---INLLSTSVARFNCLKIL 248 (250)
Q Consensus 226 s~~V~~---f~vlA~s~D~~g~~Fvs 248 (250)
++.+.+ ..++|++ + ++..+.+
T Consensus 153 s~~v~~~~~~~~la~s-~-~~~~~~a 176 (209)
T PRK13146 153 SYYAQPANPADVVAWT-D-YGGPFTA 176 (209)
T ss_pred EEEEEcCCCCcEEEEE-c-CCCEEEE
Confidence 999864 7788877 3 3434444
No 43
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.64 E-value=2.5e-15 Score=150.19 Aligned_cols=149 Identities=18% Similarity=0.310 Sum_probs=102.3
Q ss_pred CCCCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccc
Q 025574 56 KLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLY 135 (250)
Q Consensus 56 ~~~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~ 135 (250)
..+..+.|.|+-+- +++. .++.++|++.|+.+.++++....+ +.+ ..++|||||+||+....+
T Consensus 512 ~~~~~~~IlVID~g-------------ds~~-~~l~~~L~~~G~~v~vv~~~~~~~-~~~-~~~~DgLILsgGPGsp~d- 574 (717)
T TIGR01815 512 RGGEGRRILLVDHE-------------DSFV-HTLANYLRQTGASVTTLRHSHAEA-AFD-ERRPDLVVLSPGPGRPAD- 574 (717)
T ss_pred CCCCCCEEEEEECC-------------ChhH-HHHHHHHHHCCCeEEEEECCCChh-hhh-hcCCCEEEEcCCCCCchh-
Confidence 33556778887533 3443 468899999999998888765433 222 246999999999873211
Q ss_pred hHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhc
Q 025574 136 YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKL 215 (250)
Q Consensus 136 ~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l 215 (250)
. ....+++.+++.+ +|+||||+|||+|+.++||++..+ ..+.++.+.++..+. .+++|.++|+.+
T Consensus 575 ~-~~~~~I~~~~~~~-----iPvLGICLG~QlLa~a~GG~V~~~-~~p~~G~~~~V~~~~----~~~Lf~~lp~~~---- 639 (717)
T TIGR01815 575 F-DVAGTIDAALARG-----LPVFGVCLGLQGMVEAFGGALDVL-PEPVHGKASRIRVLG----PDALFAGLPERL---- 639 (717)
T ss_pred c-ccHHHHHHHHHCC-----CCEEEECHHHHHHhhhhCCEEEEC-CCCeeCcceEEEECC----CChhhhcCCCCC----
Confidence 1 1236778888888 999999999999999999985322 223334344554322 457888887553
Q ss_pred CCccceeeeecccccc------ceEEEEeec
Q 025574 216 STDCLVMQNHHVRPCT------INLLSTSVA 240 (250)
Q Consensus 216 ~~~~~v~~~Hs~~V~~------f~vlA~s~D 240 (250)
.+|++|+|.+.. ++++|++.|
T Consensus 640 ----~v~~~HS~~~~~~~LP~~~~vlA~s~d 666 (717)
T TIGR01815 640 ----TVGRYHSLFARRDRLPAELTVTAESAD 666 (717)
T ss_pred ----EEEEECCCCcccccCCCCeEEEEEeCC
Confidence 589999998732 899998843
No 44
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.62 E-value=9.4e-15 Score=128.56 Aligned_cols=134 Identities=15% Similarity=0.107 Sum_probs=93.0
Q ss_pred HHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCC--Cc---cchHHHHHHHHHHHHhCCCCCCceEEcccc
Q 025574 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--DG---LYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~--~~---~~~~~~~~li~~~~~~~~~g~~~PILGICl 163 (250)
++.+++++.|..+.+++...... ....+.++|+||++||+.. +. +|.....++++.+++.+ +|+||||+
T Consensus 18 ~i~~~L~~~g~~~~v~~~~~~~~-~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~-----~PvlGIC~ 91 (234)
T PRK07053 18 SFEQVLGARGYRVRYVDVGVDDL-ETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAG-----LPTLGICL 91 (234)
T ss_pred HHHHHHHHCCCeEEEEecCCCcc-CCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCC-----CCEEEECc
Confidence 36779999999888877643211 1123567999999999852 21 34444458888888888 99999999
Q ss_pred hhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc---ceEEEEeec
Q 025574 164 GFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT---INLLSTSVA 240 (250)
Q Consensus 164 G~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~---f~vlA~s~D 240 (250)
|+|+|+.++||++. . ....+.+..++.+++... .++++ ++|+ ...++++|++.++. .+++|++.+
T Consensus 92 G~Qlla~alGg~V~-~-~~~~e~G~~~i~~t~~g~-~~pl~-~~~~--------~~~~~~~H~d~~~lP~ga~~La~s~~ 159 (234)
T PRK07053 92 GAQLIARALGARVY-P-GGQKEIGWAPLTLTDAGR-ASPLR-HLGA--------GTPVLHWHGDTFDLPEGATLLASTPA 159 (234)
T ss_pred cHHHHHHHcCCcEe-c-CCCCeEeEEEEEEecccc-CChhh-cCCC--------cceEEEEeCCEEecCCCCEEEEcCCC
Confidence 99999999999853 2 223455667777765433 44443 4543 23588899988764 889998844
No 45
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.62 E-value=2.3e-15 Score=128.97 Aligned_cols=136 Identities=15% Similarity=0.167 Sum_probs=85.4
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHH----HHHHHHHHHHhCCCCCCceEEcccc
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI----VEKVFKKILEKNDAGDHFPLYAHCL 163 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~----~~~li~~~~~~~~~g~~~PILGICl 163 (250)
.++++++++.|++++++. +.++ ++++|+||+|||+.....+... ..+.++.+.+.+ +|+||||+
T Consensus 13 ~~~~~~l~~~g~~v~~~~---~~~~----l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~-----~PvlGiC~ 80 (199)
T PRK13181 13 RSVANALKRLGVEAVVSS---DPEE----IAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKK-----QPVLGICL 80 (199)
T ss_pred HHHHHHHHHCCCcEEEEc---ChHH----hccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCC-----CCEEEECH
Confidence 467889999999888763 3333 5679999999987632222111 124455555666 99999999
Q ss_pred hhHHHHHHhcC-ccccccccc-------------CCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccc
Q 025574 164 GFELLTMIISK-DKNILESFN-------------AADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRP 229 (250)
Q Consensus 164 G~QlL~~~~GG-~~~~l~~~~-------------~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V 229 (250)
|||+|+.+..+ ....++.++ .+.++.++... . +++||+++|+. ..+|++|++.+
T Consensus 81 G~Qll~~~~~~~~~~glg~l~~~v~~~~~~~~~~~~~G~~~v~~~---~-~~~lf~~l~~~--------~~~~~~Hs~~v 148 (199)
T PRK13181 81 GMQLLFESSEEGNVKGLGLIPGDVKRFRSEPLKVPQMGWNSVKPL---K-ESPLFKGIEEG--------SYFYFVHSYYV 148 (199)
T ss_pred hHHHhhhhcccCCcCCcceEEEEEEEcCCCCCCCCccCccccccC---C-CChhHcCCCCC--------CEEEEeCeeEe
Confidence 99999998321 111121111 11222222211 1 46788877644 35889999998
Q ss_pred cc---ceEEEEeecCCCeEEEee
Q 025574 230 CT---INLLSTSVARFNCLKILK 249 (250)
Q Consensus 230 ~~---f~vlA~s~D~~g~~Fvs~ 249 (250)
.+ +.++|++ + +|..|+++
T Consensus 149 ~~~~~~~~lA~s-~-~~~~~~~~ 169 (199)
T PRK13181 149 PCEDPEDVLATT-E-YGVPFCSA 169 (199)
T ss_pred ccCCcccEEEEE-c-CCCEEEEE
Confidence 65 6788888 3 36677654
No 46
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.61 E-value=5e-15 Score=128.30 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=88.1
Q ss_pred HHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHH----HHHHHHHHHhCCCCCCceEEccc
Q 025574 87 AASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIV----EKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 87 ~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~----~~li~~~~~~~~~g~~~PILGIC 162 (250)
-.|.+++++.++.+++.+. ++++ ++.+|+||+||+++....+.... ...++.+.+++ +|+||||
T Consensus 12 l~s~~~al~~~~~~~~~~~---~~~~----l~~~d~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~~~-----~pilGiC 79 (210)
T PRK14004 12 IHSCLKAVSLYTKDFVFTS---DPET----IENSKALILPGDGHFDKAMENLNSTGLRSTIDKHVESG-----KPLFGIC 79 (210)
T ss_pred HHHHHHHHHHcCCeEEEEC---CHHH----hccCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHHcC-----CCEEEEC
Confidence 3678999999999887663 3443 56899999999987544433221 24445555666 9999999
Q ss_pred chhHHHHHHhcC--------cccccccccC-------------CCceeeeeeeecCCCCCcccccCChhhhhhcCCccce
Q 025574 163 LGFELLTMIISK--------DKNILESFNA-------------ADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLV 221 (250)
Q Consensus 163 lG~QlL~~~~GG--------~~~~l~~~~~-------------~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v 221 (250)
+|||+|+...+. ...+|+.++. |.++.++.++. .. .+++|+++|+. ..+
T Consensus 80 ~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~~~~~~~ph~Gw~~v~~~~-~~-~~~lf~~l~~~--------~~v 149 (210)
T PRK14004 80 IGFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFEGKDFKVPHIGWNRLQIRR-KD-KSKLLKGIGDQ--------SFF 149 (210)
T ss_pred HhHHHHHHhcccccCCCcCcccCCcceeEEEEEEcCCCCCcCCccCcccceecc-CC-CCccccCCCCC--------CEE
Confidence 999999998641 1223332211 11222222211 11 45688877743 469
Q ss_pred eeeecccccc---ceEEEEeecCCCeEEEee
Q 025574 222 MQNHHVRPCT---INLLSTSVARFNCLKILK 249 (250)
Q Consensus 222 ~~~Hs~~V~~---f~vlA~s~D~~g~~Fvs~ 249 (250)
|++|||.+.. ..+++++ +++|..|.|+
T Consensus 150 ~~~HS~~~~~~~~l~~sa~~-~~~g~~~~a~ 179 (210)
T PRK14004 150 YFIHSYRPTGAEGNAITGLC-DYYQEKFPAV 179 (210)
T ss_pred EEeceeecCCCCcceEEEee-eECCEEEEEE
Confidence 9999998754 5556655 4337777765
No 47
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.61 E-value=1.8e-14 Score=127.07 Aligned_cols=131 Identities=18% Similarity=0.121 Sum_probs=88.7
Q ss_pred HHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCC---CccchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK---DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~---~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
.+++++++.|.++.++...... .+++.++++||+|++||+.. ..+|.....++++.+++.+ +|+||||+||
T Consensus 23 ~l~~~l~~~g~~~~v~~~~~~~-~~p~~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~-----~PvLGIC~G~ 96 (239)
T PRK06490 23 RVGQLLQERGYPLDIRRPRLGD-PLPDTLEDHAGAVIFGGPMSANDPDDFIRREIDWISVPLKEN-----KPFLGICLGA 96 (239)
T ss_pred HHHHHHHHCCCceEEEeccCCC-CCCCcccccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCC-----CCEEEECHhH
Confidence 4678999999988877643221 22323678999999999863 2234444457888888888 9999999999
Q ss_pred HHHHHHhcCccccccccc-CCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc---ceEEEEeec
Q 025574 166 ELLTMIISKDKNILESFN-AADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT---INLLSTSVA 240 (250)
Q Consensus 166 QlL~~~~GG~~~~l~~~~-~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~---f~vlA~s~D 240 (250)
|+|+.++||++... ... .+.+..++.++. ..+++..+| ..+|++|++.+.. ++++|++.+
T Consensus 97 Qlla~alGG~V~~~-~~G~~e~G~~~i~~~~----~~~~~~~~~----------~~~~~~H~d~~~lP~~~~~LA~s~~ 160 (239)
T PRK06490 97 QMLARHLGARVAPH-PDGRVEIGYYPLRPTE----AGRALMHWP----------EMVYHWHREGFDLPAGAELLATGDD 160 (239)
T ss_pred HHHHHHcCCEeecC-CCCCCccceEEeEECC----CcccccCCC----------CEEEEECCccccCCCCCEEEEeCCC
Confidence 99999999985321 111 244555665543 233444443 2378899988543 899999843
No 48
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.59 E-value=4.2e-15 Score=126.69 Aligned_cols=144 Identities=13% Similarity=0.187 Sum_probs=89.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccch-H-
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY-A- 137 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~-~- 137 (250)
++.|+|+...++ ..++.++++.+|++++.++. ++ .++.+||||+|||+...-... .
T Consensus 1 ~m~~~i~~~~g~---------------~~~~~~~l~~~g~~~~~~~~---~~----~l~~~dgiii~GG~~~~~~~~~~~ 58 (189)
T PRK13525 1 MMKIGVLALQGA---------------VREHLAALEALGAEAVEVRR---PE----DLDEIDGLILPGGESTTMGKLLRD 58 (189)
T ss_pred CCEEEEEEcccC---------------HHHHHHHHHHCCCEEEEeCC---hh----HhccCCEEEECCCChHHHHHHHHh
Confidence 357899887764 23456789999999988862 22 267899999999975211111 1
Q ss_pred -HHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCc-ccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhc
Q 025574 138 -IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKD-KNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKL 215 (250)
Q Consensus 138 -~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~-~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l 215 (250)
...++++.+.+++ +|+||||.|+|+|+.++||. ...++.++.+....+..+.......+.+|.++++
T Consensus 59 ~~~~~~i~~~~~~g-----~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~v~~~~~g~~~g~~~~~~~~~~~~~------ 127 (189)
T PRK13525 59 FGLLEPLREFIASG-----LPVFGTCAGMILLAKEIEGYEQEHLGLLDITVRRNAFGRQVDSFEAELDIKGLGE------ 127 (189)
T ss_pred ccHHHHHHHHHHCC-----CeEEEECHHHHHHHhhcccCCCCceeeEEEEEEEccCCCceeeEEecccccCCCC------
Confidence 1236677777777 99999999999999999884 1112111111000000000000002345555543
Q ss_pred CCccceeeeecccccc----ceEEEEe
Q 025574 216 STDCLVMQNHHVRPCT----INLLSTS 238 (250)
Q Consensus 216 ~~~~~v~~~Hs~~V~~----f~vlA~s 238 (250)
...+|++|++.|.. ++++|++
T Consensus 128 --~~~~~~~H~d~v~~lp~~~~vlA~~ 152 (189)
T PRK13525 128 --PFPAVFIRAPYIEEVGPGVEVLATV 152 (189)
T ss_pred --CeEEEEEeCceeeccCCCcEEEEEc
Confidence 34589999999964 9999998
No 49
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.59 E-value=9.9e-15 Score=128.43 Aligned_cols=133 Identities=17% Similarity=0.237 Sum_probs=94.5
Q ss_pred HHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCC------Cccch--HHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 90 YVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK------DGLYY--AIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~------~~~~~--~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
|..++++.|.++.+...... +.++..++++||||++||+.. +.+|. ....++++.+++.+ +|+|||
T Consensus 17 ~~~~~~~~g~~~~~~~~~~g-~~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~-----~PvlGI 90 (235)
T PRK08250 17 YLKWAENRGYDISYSRVYAG-EALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAG-----KAVIGV 90 (235)
T ss_pred HHHHHHHCCCeEEEEEccCC-CCCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcC-----CCEEEE
Confidence 55688889988776654432 223323568999999999862 11233 22347788888888 999999
Q ss_pred cchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc---ceEEEEe
Q 025574 162 CLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT---INLLSTS 238 (250)
Q Consensus 162 ClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~---f~vlA~s 238 (250)
|+|+|+|+.++||++. ... ..+.+..++.++.... .+++|.++|+.+ .++++|++.+.. .+++|++
T Consensus 91 C~G~Qlla~alGg~V~-~~~-~~e~G~~~v~lt~~g~-~d~l~~~~~~~~--------~v~~~H~d~~~lP~~a~~LA~s 159 (235)
T PRK08250 91 CLGAQLIGEALGAKYE-HSP-EKEIGYFPITLTEAGL-KDPLLSHFGSTL--------TVGHWHNDMPGLTDQAKVLATS 159 (235)
T ss_pred ChhHHHHHHHhCceec-cCC-CCceeEEEEEEccccc-cCchhhcCCCCc--------EEEEEecceecCCCCCEEEECC
Confidence 9999999999999853 222 2456677887776544 677998888654 478899987653 8999988
Q ss_pred e
Q 025574 239 V 239 (250)
Q Consensus 239 ~ 239 (250)
.
T Consensus 160 ~ 160 (235)
T PRK08250 160 E 160 (235)
T ss_pred C
Confidence 3
No 50
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.59 E-value=5.6e-15 Score=126.26 Aligned_cols=140 Identities=10% Similarity=0.096 Sum_probs=83.5
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHH-HHHHHHHH-hCCCCCCceEEcccchh
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVE-KVFKKILE-KNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~-~li~~~~~-~~~~g~~~PILGIClG~ 165 (250)
.+.+++|+++|++++.+. ++++ ++++|+||+||++.....+....+ .+.+.+.+ .+ +|+||||+||
T Consensus 13 ~s~~~al~~~g~~~~~v~---~~~~----l~~~D~lIlPG~g~~~~~~~~L~~~gl~~~i~~~~g-----~PvlGIClGm 80 (192)
T PRK13142 13 SNVKRAIEHLGYEVVVSN---TSKI----IDQAETIILPGVGHFKDAMSEIKRLNLNAILAKNTD-----KKMIGICLGM 80 (192)
T ss_pred HHHHHHHHHcCCCEEEEe---CHHH----hccCCEEEECCCCCHHHHHHHHHHCCcHHHHHHhCC-----CeEEEECHHH
Confidence 678899999999988874 3343 567999999999885443332111 22333322 23 9999999999
Q ss_pred HHHHHHh-cCcccccccccCCCceee--eeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc-ceEEEEeecC
Q 025574 166 ELLTMII-SKDKNILESFNAADQAST--LQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT-INLLSTSVAR 241 (250)
Q Consensus 166 QlL~~~~-GG~~~~l~~~~~~~~~~p--i~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~-f~vlA~s~D~ 241 (250)
|+|+... .|+...|+.++.+..+.+ +.+ ++.. |+.+... ..+. +..+||.|+|.+.. -.+++++ +
T Consensus 81 QlL~~~~~eg~~~GLgll~~~V~rf~~~~~v-ph~G-Wn~~~~~--~~l~-----~~~~yFVhSy~v~~~~~v~~~~-~- 149 (192)
T PRK13142 81 QLMYEHSDEGDASGLGFIPGNISRIQTEYPV-PHLG-WNNLVSK--HPML-----NQDVYFVHSYQAPMSENVIAYA-Q- 149 (192)
T ss_pred HHHhhhcccCCcCccCceeEEEEECCCCCCC-Cccc-ccccCCC--Cccc-----ccEEEEECCCeECCCCCEEEEE-E-
Confidence 9999975 344445554433221111 100 1111 3333211 1111 14689999999942 4566766 3
Q ss_pred CCeEEEeeC
Q 025574 242 FNCLKILKL 250 (250)
Q Consensus 242 ~g~~Fvs~~ 250 (250)
||.+|++++
T Consensus 150 yg~~~~~~v 158 (192)
T PRK13142 150 YGADIPAIV 158 (192)
T ss_pred CCCeEEEEE
Confidence 677788874
No 51
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.59 E-value=4.1e-15 Score=127.13 Aligned_cols=135 Identities=17% Similarity=0.143 Sum_probs=85.4
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccc--hH--HHHHHHHHHHHhCCCCCCceEEcccc
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLY--YA--IVEKVFKKILEKNDAGDHFPLYAHCL 163 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~--~~--~~~~li~~~~~~~~~g~~~PILGICl 163 (250)
.+.+++|+++|+.+++++. .++ ++++|+||+|||+..+... .. ...+.++.+.+++ +||||||+
T Consensus 12 ~~~~~~l~~~g~~v~v~~~---~~~----l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~pilGiC~ 79 (198)
T cd01748 12 RSVANALERLGAEVIITSD---PEE----ILSADKLILPGVGAFGDAMANLRERGLIEALKEAIASG-----KPFLGICL 79 (198)
T ss_pred HHHHHHHHHCCCeEEEEcC---hHH----hccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCC-----CcEEEECH
Confidence 3578899999999888763 222 5679999999876532211 11 1235667776777 99999999
Q ss_pred hhHHHHHHh--cCcccccccccC--------------CCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecc
Q 025574 164 GFELLTMII--SKDKNILESFNA--------------ADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHV 227 (250)
Q Consensus 164 G~QlL~~~~--GG~~~~l~~~~~--------------~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~ 227 (250)
|||+|+.+. |+....++-++. +.+..++... . ++++|+++|.. ..++++|++
T Consensus 80 G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~~~G~~~v~~~---~-~~~lf~~l~~~--------~~v~~~Hs~ 147 (198)
T cd01748 80 GMQLLFESSEEGGGTKGLGLIPGKVVRFPASEGLKVPHMGWNQLEIT---K-ESPLFKGIPDG--------SYFYFVHSY 147 (198)
T ss_pred HHHHhccccccCCCCCCCCCcceEEEECCCCCCceEEEeccceEEEC---C-CChhhhCCCCC--------CeEEEEeEE
Confidence 999999982 221112211111 2223333321 2 46688877644 358999999
Q ss_pred cccc---ceEEEEeecCCCeEEEe
Q 025574 228 RPCT---INLLSTSVARFNCLKIL 248 (250)
Q Consensus 228 ~V~~---f~vlA~s~D~~g~~Fvs 248 (250)
.+.+ +.++|++. ++.+|.+
T Consensus 148 ~v~~~~~~~~la~s~--~~~~~~~ 169 (198)
T cd01748 148 YAPPDDPDYILATTD--YGGKFPA 169 (198)
T ss_pred EEecCCcceEEEEec--CCCeEEE
Confidence 9965 77888873 3445554
No 52
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.59 E-value=8.8e-15 Score=128.82 Aligned_cols=102 Identities=18% Similarity=0.168 Sum_probs=65.6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhH---HHhcccCCEEEECCCCCCCccchH
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL---FEKLELVNGVLYTGGWAKDGLYYA 137 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l---~~~l~~~dgvIlpGG~~~~~~~~~ 137 (250)
++||++...... .+.+.+.+. ++..+..+.+.++.+++.+.+.... .+.++.+||||++||+... .. .
T Consensus 1 ~~i~lvg~~~~~------~day~s~~~-~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~~-~~-~ 71 (235)
T cd01746 1 VRIALVGKYVEL------PDAYLSVLE-ALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGIR-GV-E 71 (235)
T ss_pred CEEEEEECCcCC------HHHHHHHHH-HHHHHHHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCCc-ch-h
Confidence 367777654321 112333332 3445555566677766555332111 2457889999999999742 22 2
Q ss_pred HHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcc
Q 025574 138 IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDK 176 (250)
Q Consensus 138 ~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~ 176 (250)
....+++++++.+ +|+||||+|||+|+.++||+.
T Consensus 72 ~~~~~i~~~~~~~-----~PvlGIClG~Q~l~~~~g~~~ 105 (235)
T cd01746 72 GKILAIKYARENN-----IPFLGICLGMQLAVIEFARNV 105 (235)
T ss_pred hHHHHHHHHHHCC-----ceEEEEEhHHHHHHHHHHHHh
Confidence 2236788888888 999999999999999999874
No 53
>PRK05665 amidotransferase; Provisional
Probab=99.59 E-value=1.1e-14 Score=128.57 Aligned_cols=132 Identities=14% Similarity=0.190 Sum_probs=86.5
Q ss_pred HHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCC---CccchHHHHHHHHHHHHhCCCCCCceEEcccchhH
Q 025574 90 YVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK---DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~---~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~Q 166 (250)
+.+++...+.......++.....++..++++||||++||+.. +.+|.....++++.+++.+ +|+||||+|+|
T Consensus 28 ~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~-----~PilGIC~GhQ 102 (240)
T PRK05665 28 FEQLFARQPIAAEFVVYNVVQGDYPADDEKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERG-----DKLLGVCFGHQ 102 (240)
T ss_pred HHHHHHhCCCCceEEEEeccCCCCCCCcccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcC-----CCEEEEeHHHH
Confidence 445666666432211122111122334678999999999863 2345555668888888888 99999999999
Q ss_pred HHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc----ceEEEEee
Q 025574 167 LLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT----INLLSTSV 239 (250)
Q Consensus 167 lL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~----f~vlA~s~ 239 (250)
+|+.++||++. ......+.+..+++++. ..++|..+|+.+ .++++|++.|.. ++++|+|.
T Consensus 103 lla~AlGG~V~-~~~~G~e~G~~~~~~~~----~~~~~~~~~~~~--------~~~~~H~D~V~~LP~ga~~La~s~ 166 (240)
T PRK05665 103 LLALLLGGKAE-RASQGWGVGIHRYQLAA----HAPWMSPAVTEL--------TLLISHQDQVTALPEGATVIASSD 166 (240)
T ss_pred HHHHHhCCEEE-eCCCCcccceEEEEecC----CCccccCCCCce--------EEEEEcCCeeeeCCCCcEEEEeCC
Confidence 99999999853 22222233444555432 345777776543 478899999864 89999883
No 54
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.57 E-value=1e-14 Score=142.15 Aligned_cols=136 Identities=10% Similarity=0.139 Sum_probs=90.9
Q ss_pred CcchhhHHHHHHHHHHcCCe-EEEe-ecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceE
Q 025574 81 TNASYIAASYVKFVESAGAR-VIPL-IYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~-~v~i-~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PI 158 (250)
.++||.. ++++.|++.|.. +.++ +++.+.+.+.. ..+||||++||+.. +.......++++.+ +.+ +||
T Consensus 7 n~dsft~-nl~~~l~~~g~~~v~~~~~~~~~~~~~~~--~~~d~vIlsgGP~~-p~~~~~~~~li~~~-~~~-----~Pv 76 (534)
T PRK14607 7 NYDSFTY-NIYQYIGELGPEEIEVVRNDEITIEEIEA--LNPSHIVISPGPGR-PEEAGISVEVIRHF-SGK-----VPI 76 (534)
T ss_pred CchhHHH-HHHHHHHHcCCCeEEEECCCCCCHHHHHh--cCCCEEEECCCCCC-hhhCCccHHHHHHh-hcC-----CCE
Confidence 5678865 589999999986 4444 44444444432 25899999999983 21112223566653 556 999
Q ss_pred EcccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeeccccc----c--c
Q 025574 159 YAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPC----T--I 232 (250)
Q Consensus 159 LGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~----~--f 232 (250)
||||+|||+|+.++||++... ....++...++.. . .+.+|+++|+.+ .++++|+|.+. | |
T Consensus 77 LGIClG~QlLa~a~Gg~V~~~-~~~~~G~~~~v~~----~-~~~lf~~~~~~~--------~v~~~Hs~~v~~~~lp~~~ 142 (534)
T PRK14607 77 LGVCLGHQAIGYAFGGKIVHA-KRILHGKTSPIDH----N-GKGLFRGIPNPT--------VATRYHSLVVEEASLPECL 142 (534)
T ss_pred EEEcHHHHHHHHHcCCeEecC-CccccCCceeEEE----C-CCcchhcCCCCc--------EEeeccchheecccCCCCe
Confidence 999999999999999984222 1222343344432 1 456888887543 48899999984 2 8
Q ss_pred eEEEEeec
Q 025574 233 NLLSTSVA 240 (250)
Q Consensus 233 ~vlA~s~D 240 (250)
+++|++.|
T Consensus 143 ~vlA~s~d 150 (534)
T PRK14607 143 EVTAKSDD 150 (534)
T ss_pred EEEEEcCC
Confidence 99999844
No 55
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.55 E-value=4e-14 Score=143.82 Aligned_cols=144 Identities=13% Similarity=0.176 Sum_probs=97.2
Q ss_pred CCcchhhHHHHHHHHHHc-CCeEEEeecCC-ChhhHHHh---cccCCEEEECCCCCCCccchHHHHHHHHHHHH-hCCCC
Q 025574 80 ATNASYIAASYVKFVESA-GARVIPLIYNE-PEDVLFEK---LELVNGVLYTGGWAKDGLYYAIVEKVFKKILE-KNDAG 153 (250)
Q Consensus 80 ~~~~~~i~~s~v~~le~~-G~~~v~i~~~~-~~~~l~~~---l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~-~~~~g 153 (250)
+.++||.. ++++.|++. |..++++++++ +.+++... +..+|+|||+|||.. |.........++.+.+ .+
T Consensus 88 DnyDSfTy-NL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~-P~~~~d~Gi~~~~i~~~~~--- 162 (918)
T PLN02889 88 DNYDSYTY-NIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGS-PTCPADIGICLRLLLECRD--- 162 (918)
T ss_pred eCCCchHH-HHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCC-ccchHHHHHHHHHHHHhCC---
Confidence 46788876 488999888 99998888764 34443321 347899999999983 4222222111222222 35
Q ss_pred CCceEEcccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc--
Q 025574 154 DHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT-- 231 (250)
Q Consensus 154 ~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~-- 231 (250)
+||||||||||+|+.++||++... +...|+....+... .+.||.++|... ++...+..|||..|.+
T Consensus 163 --iPILGICLGhQ~i~~~~Gg~V~~~-~~~~HG~~s~I~h~-----~~~lF~glp~~~----~~~f~v~RYHSL~v~~~~ 230 (918)
T PLN02889 163 --IPILGVCLGHQALGYVHGARIVHA-PEPVHGRLSEIEHN-----GCRLFDDIPSGR----NSGFKVVRYHSLVIDAES 230 (918)
T ss_pred --CcEEEEcHHHHHHHHhcCceEEeC-CCceeeeeeeEeec-----CchhhcCCCcCC----CCCceEEeCCCcccccCC
Confidence 999999999999999999985432 23345555555431 456999998531 1234588999999863
Q ss_pred ----ceEEEEeec
Q 025574 232 ----INLLSTSVA 240 (250)
Q Consensus 232 ----f~vlA~s~D 240 (250)
++++|++.|
T Consensus 231 lP~~L~~~A~t~~ 243 (918)
T PLN02889 231 LPKELVPIAWTSS 243 (918)
T ss_pred CCCceEEEEEECC
Confidence 899998865
No 56
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.53 E-value=9.6e-14 Score=119.05 Aligned_cols=149 Identities=13% Similarity=0.147 Sum_probs=90.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCc-cchH--H
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG-LYYA--I 138 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~-~~~~--~ 138 (250)
.|||+.-++. ...|+ .++.++++..|..+.++.... .+ .++++|+||+|||+.... .... .
T Consensus 2 ~i~vl~~~~~----------~~e~~-~~~~~~l~~~g~~~~~~~~~~-~~----~l~~~d~iii~GG~~~~~~~~~~~~~ 65 (200)
T PRK13527 2 KIGVLALQGD----------VEEHI-DALKRALDELGIDGEVVEVRR-PG----DLPDCDALIIPGGESTTIGRLMKREG 65 (200)
T ss_pred EEEEEEECCc----------cHHHH-HHHHHHHHhcCCCeEEEEeCC-hH----HhccCCEEEECCCcHHHHHHHHhhcc
Confidence 4788776643 23343 357789999998777666543 23 256899999999976311 1111 1
Q ss_pred HHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcccccccccCCCceeeeeeeecCC-------CCCcccccCChhh
Q 025574 139 VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTS-------IEGTVFQRFPPKL 211 (250)
Q Consensus 139 ~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~-------~~s~Lf~~lp~~~ 211 (250)
..+.++.+.+.+ +|+||||+|+|+|+.++||.. +.......-+..+...+.... ..+.+|.++|+.
T Consensus 66 ~~~~i~~~~~~~-----~pilGIC~G~Qll~~~~gg~~-v~~~~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~- 138 (200)
T PRK13527 66 ILDEIKEKIEEG-----LPILGTCAGLILLAKEVGDDR-VTKTEQPLLGLMDVTVKRNAFGRQRDSFEAEIDLSGLDGP- 138 (200)
T ss_pred HHHHHHHHHHCC-----CeEEEECHHHHHHHhhhcCCc-cCCCCCceeeeeEEEEeeccccCccccEEEeEeccccCCc-
Confidence 235566666677 999999999999999998841 111111112233333221100 012345555433
Q ss_pred hhhcCCccceeeeecccccc----ceEEEEeec
Q 025574 212 IKKLSTDCLVMQNHHVRPCT----INLLSTSVA 240 (250)
Q Consensus 212 ~~~l~~~~~v~~~Hs~~V~~----f~vlA~s~D 240 (250)
..++++|++.+.. ++++|++.|
T Consensus 139 -------~~~~~~H~~~v~~lp~~~~~la~~~~ 164 (200)
T PRK13527 139 -------FHAVFIRAPAITKVGGDVEVLAKLDD 164 (200)
T ss_pred -------ceEEEEccccccccCCCeEEEEEECC
Confidence 3578899998874 899998843
No 57
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.52 E-value=6.6e-14 Score=120.35 Aligned_cols=134 Identities=18% Similarity=0.146 Sum_probs=85.0
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchH----HHHHHHHHHHHhCCCCCCceEEcccc
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA----IVEKVFKKILEKNDAGDHFPLYAHCL 163 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~----~~~~li~~~~~~~~~g~~~PILGICl 163 (250)
.+++++|++.|+.+.++. .+++ ++++|+||+|||+..++.... ...++++.+++.+ +|+||||+
T Consensus 13 ~~i~~~l~~~G~~v~~~~---~~~~----l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~pvlGIC~ 80 (205)
T PRK13141 13 RSVEKALERLGAEAVITS---DPEE----ILAADGVILPGVGAFPDAMANLRERGLDEVIKEAVASG-----KPLLGICL 80 (205)
T ss_pred HHHHHHHHHCCCeEEEEC---CHHH----hccCCEEEECCCCchHHHHHHHHHcChHHHHHHHHHCC-----CcEEEECH
Confidence 568889999999888864 2332 568999999998653222111 1235566666777 99999999
Q ss_pred hhHHHHHHh------------cCcccccccc-----cCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeec
Q 025574 164 GFELLTMII------------SKDKNILESF-----NAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHH 226 (250)
Q Consensus 164 G~QlL~~~~------------GG~~~~l~~~-----~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs 226 (250)
|+|+|+... +|++. ..+. ..+.+..++..+ . +++||+++|.. ..++++|+
T Consensus 81 G~Qll~~~~~~~~~~~~lg~l~g~v~-~~~~~~~~~~~~~g~~~i~~~---~-~~~l~~~l~~~--------~~v~~~Hs 147 (205)
T PRK13141 81 GMQLLFESSEEFGETEGLGLLPGRVR-RFPPEEGLKVPHMGWNQLELK---K-ESPLLKGIPDG--------AYVYFVHS 147 (205)
T ss_pred HHHHhhhccccCCCCCccceEEEEEE-EcCCCCCCcccEecCccceeC---C-CChhhhCCCCC--------CEEEEECe
Confidence 999999973 23311 0010 012223333332 1 56788877644 35788999
Q ss_pred ccccc---ceEEEEeecCCCeEEEe
Q 025574 227 VRPCT---INLLSTSVARFNCLKIL 248 (250)
Q Consensus 227 ~~V~~---f~vlA~s~D~~g~~Fvs 248 (250)
+.+.+ +.++|++ | +|.++.+
T Consensus 148 ~~v~~~~~~~v~a~~-~-~~~~~~a 170 (205)
T PRK13141 148 YYADPCDEEYVAATT-D-YGVEFPA 170 (205)
T ss_pred eEeccCCcCeEEEEE-e-CCcEEEE
Confidence 99966 8888877 3 3445544
No 58
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.50 E-value=2.2e-13 Score=116.99 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=84.0
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCc--cchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG--LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~--~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
.++.++++++|+++++++ +++ .++.+|+||+|||+.... .+.....+.++.+++.+ +|+||||+|+
T Consensus 14 ~~~~~~l~~~G~~~~~~~---~~~----~~~~~d~iii~G~~~~~~~~~~~~~~~~~i~~~~~~~-----~PilgIC~G~ 81 (200)
T PRK13143 14 RSVSKALERAGAEVVITS---DPE----EILDADGIVLPGVGAFGAAMENLSPLRDVILEAARSG-----KPFLGICLGM 81 (200)
T ss_pred HHHHHHHHHCCCeEEEEC---CHH----HHccCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHcC-----CCEEEECHHH
Confidence 568899999999988774 222 256899999999754211 12222346677777878 9999999999
Q ss_pred HHHHHHh------------cCccccccc--ccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc
Q 025574 166 ELLTMII------------SKDKNILES--FNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT 231 (250)
Q Consensus 166 QlL~~~~------------GG~~~~l~~--~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~ 231 (250)
|+|+.+. ||++..... ...+.+..++..+ . ++++|++++. ..++++|++.+.+
T Consensus 82 q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~g~~~v~~~---~-~~~l~~~l~~---------~~~~~~Hs~~~~~ 148 (200)
T PRK13143 82 QLLFESSEEGGGVRGLGLFPGRVVRFPAGVKVPHMGWNTVKVV---K-DCPLFEGIDG---------EYVYFVHSYYAYP 148 (200)
T ss_pred HHHhhhhccCCCCCCcceeeEEEEEcCCCCCCCeecceEEEEc---C-CChhhccCCC---------cEEEEEeeeeeCC
Confidence 9999863 333110000 0011123333322 2 4567766632 2367899999876
Q ss_pred ---ceEEEEeecCCCeEEEe
Q 025574 232 ---INLLSTSVARFNCLKIL 248 (250)
Q Consensus 232 ---f~vlA~s~D~~g~~Fvs 248 (250)
..++|++ + ++..+++
T Consensus 149 ~~~~~~la~~-~-~~~~~~~ 166 (200)
T PRK13143 149 DDEDYVVATT-D-YGIEFPA 166 (200)
T ss_pred CCcceEEEEE-c-CCCEEEE
Confidence 7888887 3 3555544
No 59
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.48 E-value=1e-13 Score=134.80 Aligned_cols=136 Identities=12% Similarity=0.148 Sum_probs=87.5
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCCChh-hHHHhc-ccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceE
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNEPED-VLFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~-~l~~~l-~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PI 158 (250)
.++||.. .+++.|++.|+.+.+++.+.+.+ .++++. .++|+|||+|||.. |.......+++++. ..+ +||
T Consensus 9 n~dsft~-nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~-p~d~~~~~~i~~~~-~~~-----iPI 80 (531)
T PRK09522 9 NIDSFTY-NLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGV-PSEAGCMPELLTRL-RGK-----LPI 80 (531)
T ss_pred CCChHHH-HHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCC-hhhCCCCHHHHHHH-hcC-----CCE
Confidence 5677764 48889999999888887653311 122211 24789999999984 21111223555543 346 999
Q ss_pred EcccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc----ceE
Q 025574 159 YAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT----INL 234 (250)
Q Consensus 159 LGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~----f~v 234 (250)
||||+|||+|+.++||++... ....++....+. . . ...+|.++|..+ .+++||++.+.. +++
T Consensus 81 LGIClG~QlLa~a~GG~V~~~-~~~~~G~~~~i~---~-~-~~~lf~~~~~~~--------~v~~~Hs~~v~~lP~~l~v 146 (531)
T PRK09522 81 IGICLGHQAIVEAYGGYVGQA-GEILHGKASSIE---H-D-GQAMFAGLTNPL--------PVARYHSLVGSNIPAGLTI 146 (531)
T ss_pred EEEcHHHHHHHHhcCCEEEeC-CceeeeeEEEEe---e-c-CCccccCCCCCc--------EEEEehheecccCCCCcEE
Confidence 999999999999999985311 111122222222 1 1 345888887543 588999999864 999
Q ss_pred EEEe
Q 025574 235 LSTS 238 (250)
Q Consensus 235 lA~s 238 (250)
+|++
T Consensus 147 lA~s 150 (531)
T PRK09522 147 NAHF 150 (531)
T ss_pred EEec
Confidence 9975
No 60
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.45 E-value=3.3e-13 Score=115.53 Aligned_cols=140 Identities=13% Similarity=0.124 Sum_probs=82.4
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccc--hHH--HHHHHHHHHHhCCCCCCceEEcccc
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLY--YAI--VEKVFKKILEKNDAGDHFPLYAHCL 163 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~--~~~--~~~li~~~~~~~~~g~~~PILGICl 163 (250)
.++.++++..|+.+.+++. .+. ++.+|+||+||++.....+ ... .+.+++.+++.+ +||||||+
T Consensus 12 ~~l~~~l~~~g~~v~v~~~---~~~----l~~~d~lii~G~~~~~~~~~~l~~~~~~~l~~~~~~~~-----~pvlGiC~ 79 (196)
T TIGR01855 12 GSVKRALKRVGAEPVVVKD---SKE----AELADKLILPGVGAFGAAMARLRENGLDLFVELVVRLG-----KPVLGICL 79 (196)
T ss_pred HHHHHHHHHCCCcEEEEcC---HHH----hccCCEEEECCCCCHHHHHHHHHHcCcHHHHHHHHhCC-----CCEEEECH
Confidence 3577899999999888863 222 5689999999965422111 111 234446666777 99999999
Q ss_pred hhHHHHHHh--cCcccccccccCC------Cceeeeeeee-cCCCCCcccccCChhhhhhcCCccceeeeecccccc--c
Q 025574 164 GFELLTMII--SKDKNILESFNAA------DQASTLQFME-NTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT--I 232 (250)
Q Consensus 164 G~QlL~~~~--GG~~~~l~~~~~~------~~~~pi~~~~-~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~--f 232 (250)
|||+|+.+. |++.+.++-++.+ .....+.|.. .....++||+++|+. ..+|++|++.+++ -
T Consensus 80 G~Qll~~~~~~~~~~~glg~~~~~v~~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~--------~~v~~~Hs~~v~~~~~ 151 (196)
T TIGR01855 80 GMQLLFERSEEGGGVPGLGLIKGNVVKLEARKVPHMGWNEVHPVKESPLLNGIDEG--------AYFYFVHSYYAVCEEE 151 (196)
T ss_pred HHHHhhhccccCCCCCCcceeeEEEEECCCCCCCcccCeeeeeCCCChHHhCCCCC--------CEEEEECeeEecCCCC
Confidence 999999983 2222222211110 0011112211 011145677777643 4689999999976 2
Q ss_pred eEEEEeecCCCeEEEee
Q 025574 233 NLLSTSVARFNCLKILK 249 (250)
Q Consensus 233 ~vlA~s~D~~g~~Fvs~ 249 (250)
.+++.+ + +|..|.++
T Consensus 152 ~~~a~~-~-~g~~~~~~ 166 (196)
T TIGR01855 152 AVLAYA-D-YGEKFPAA 166 (196)
T ss_pred cEEEEE-c-CCcEEEEE
Confidence 345544 3 45666543
No 61
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.45 E-value=9.7e-13 Score=116.48 Aligned_cols=82 Identities=17% Similarity=0.361 Sum_probs=59.2
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHH---
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI--- 138 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~--- 138 (250)
.|||++.+++ ..+..++|+++|++++.+. ++++ ++.+||||||||.. ..+...
T Consensus 3 ~igVLa~qG~---------------~~e~~~aL~~lG~ev~~v~---~~~~----L~~~DgLILPGGfs--~~~~~L~~~ 58 (248)
T PLN02832 3 AIGVLALQGS---------------FNEHIAALRRLGVEAVEVR---KPEQ----LEGVSGLIIPGGES--TTMAKLAER 58 (248)
T ss_pred EEEEEeCCCc---------------hHHHHHHHHHCCCcEEEeC---CHHH----hccCCEEEeCCCHH--HHHHHHHhh
Confidence 6999998875 2456789999999988875 2333 67899999999754 222221
Q ss_pred --HHHHHHHHHHhCCCCCCceEEcccchhHHHHHHh
Q 025574 139 --VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (250)
Q Consensus 139 --~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~ 172 (250)
..+.++.+.+.+ +|+||||+|||+|+...
T Consensus 59 ~gl~~~I~~~v~~g-----~PvLGiC~GmqlLa~~~ 89 (248)
T PLN02832 59 HNLFPALREFVKSG-----KPVWGTCAGLIFLAERA 89 (248)
T ss_pred cchHHHHHHHHHcC-----CCEEEEChhHHHHHHHh
Confidence 123344444556 99999999999999974
No 62
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.40 E-value=2.9e-12 Score=129.01 Aligned_cols=132 Identities=17% Similarity=0.226 Sum_probs=83.1
Q ss_pred CcchhhHHHHHHHHHHc-C--CeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCce
Q 025574 81 TNASYIAASYVKFVESA-G--ARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFP 157 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~-G--~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~P 157 (250)
.++||.. ++++.|++. | +.+++++++....+....+..+||||++|||.. +... ....+++.+++.+ +...+|
T Consensus 13 ~~DSft~-nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~-p~~~-~~~~i~~~i~~~~-~~~~iP 88 (742)
T TIGR01823 13 SYDSFTY-NVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGN-PNNA-QDMGIISELWELA-NLDEVP 88 (742)
T ss_pred CCcchHH-HHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCC-ccch-hhhHHHHHHHHhc-ccCCCc
Confidence 4566653 477788775 3 566778876543333333568999999999983 3211 1124455555432 122399
Q ss_pred EEcccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc
Q 025574 158 LYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT 231 (250)
Q Consensus 158 ILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~ 231 (250)
|||||+|||+|+.++||++.-. ....++....+... ...+|.+++. ..++++|++.+.+
T Consensus 89 vLGIClG~QlLa~a~GG~v~~~-~~~~hG~~~~v~~~-----~~~lf~gl~~---------~~v~~~Hs~~v~~ 147 (742)
T TIGR01823 89 VLGICLGFQSLCLAQGADISRL-PTPKHGQVYEMHTN-----DAAIFCGLFS---------VKSTRYHSLYANP 147 (742)
T ss_pred EEEEchhhHHHHhhcCCEEEEC-CCCCcCeEEEEEEC-----CccccCCCCC---------CceeEEEEEEccC
Confidence 9999999999999999984322 22234433344321 3458888863 2478899998854
No 63
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.40 E-value=5.1e-12 Score=104.52 Aligned_cols=153 Identities=14% Similarity=0.201 Sum_probs=102.9
Q ss_pred CCCCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHH-HHcCCeEEEeecCC-ChhhHHHhcccCCEEEECCCCCCCc
Q 025574 56 KLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFV-ESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDG 133 (250)
Q Consensus 56 ~~~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~l-e~~G~~~v~i~~~~-~~~~l~~~l~~~dgvIlpGG~~~~~ 133 (250)
....+|+|-| +.++||... .+++| -+.|+.+.+.+.++ +.+++.. .+.++++++.||.. |
T Consensus 15 ~~~n~piv~I--------------DNYDSFT~N-v~qYL~~e~g~~~~VyRNDeiTV~El~~--~NP~~LliSPGPG~-P 76 (223)
T KOG0026|consen 15 SKQNGPIIVI--------------DNYDSFTYN-LCQYLMGELGCHFEVYRNDELTVEELKR--KNPRGLLISPGPGT-P 76 (223)
T ss_pred ccccCCEEEE--------------ecccchhHH-HHHHhhhccCccEEEEecCcccHHHHhh--cCCCeEEecCCCCC-C
Confidence 3467899887 245566543 56666 56788888887664 3444443 37899999999984 3
Q ss_pred cchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCccccccccc-CCCceeeeeeeecCCCCCcccccCChhhh
Q 025574 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFN-AADQASTLQFMENTSIEGTVFQRFPPKLI 212 (250)
Q Consensus 134 ~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~-~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~ 212 (250)
...+.-.+.+.+. ... +|+||||.|.|-|..++||++. ...|. .|+...+++.... .+.-+|+++|..+
T Consensus 77 ~DsGIs~~~i~~f-~~~-----iP~fGvCMGlQCi~e~fGGkv~-~a~~~i~HGK~S~i~~D~~--~~~G~f~g~~q~~- 146 (223)
T KOG0026|consen 77 QDSGISLQTVLEL-GPL-----VPLFGVCMGLQCIGEAFGGKIV-RSPFGVMHGKSSMVHYDEK--GEEGLFSGLSNPF- 146 (223)
T ss_pred ccccchHHHHHHh-CCC-----CceeeeehhhhhhhhhhCcEEe-ccCcceeeccccccccCCc--cccccccCCCCCe-
Confidence 3222222334443 344 9999999999999999999853 23332 4566677765321 1456999998654
Q ss_pred hhcCCccceeeeecccccc-------ceEEEEeecCCCeE
Q 025574 213 KKLSTDCLVMQNHHVRPCT-------INLLSTSVARFNCL 245 (250)
Q Consensus 213 ~~l~~~~~v~~~Hs~~V~~-------f~vlA~s~D~~g~~ 245 (250)
.+-.||+...+. ++|+|++ ++|..
T Consensus 147 -------~V~RYHSLa~~~sSlP~d~L~VTawT--EnG~i 177 (223)
T KOG0026|consen 147 -------IVGRYHSLVIEKDSFPSDELEVTAWT--EDGLV 177 (223)
T ss_pred -------EEEeeeeeeeecccCCccceeeeEec--cCcEE
Confidence 478899998875 8999998 34553
No 64
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.39 E-value=4.1e-12 Score=122.45 Aligned_cols=99 Identities=27% Similarity=0.345 Sum_probs=70.4
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCC----eEEEeecCCChhhHH----HhcccCCEEEECCCC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA----RVIPLIYNEPEDVLF----EKLELVNGVLYTGGW 129 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~----~~v~i~~~~~~~~l~----~~l~~~dgvIlpGG~ 129 (250)
..++.||+++.-. ...++| .|+.++|+.+|+ ++.+.+.+. +++. +.++++|||++|||+
T Consensus 287 ~~~v~IalVGKY~---------~~~daY--~SI~eAL~~ag~~~~~~V~~~~i~s--e~i~~~~~~~L~~~dGIiLpGG~ 353 (525)
T TIGR00337 287 KHEVTIGIVGKYV---------ELKDSY--LSVIEALKHAGAKLDTKVNIKWIDS--EDLEEEGAEFLKGVDGILVPGGF 353 (525)
T ss_pred CCCcEEEEEeCCc---------CCHHHH--HHHHHHHHhCccccCCEEEEEEecH--HHhhhhhhhhhcCCCEEEeCCCC
Confidence 3468999988542 245667 479999999986 445444432 2221 236789999999998
Q ss_pred CCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcc
Q 025574 130 AKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDK 176 (250)
Q Consensus 130 ~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~ 176 (250)
.. +.. ...-.+++++.+.+ +|+||||+|||+|+.++|+++
T Consensus 354 G~-~~~-~g~i~ai~~a~e~~-----iP~LGIClG~Qll~i~~grnv 393 (525)
T TIGR00337 354 GE-RGV-EGKILAIKYARENN-----IPFLGICLGMQLAVIEFARNV 393 (525)
T ss_pred CC-hhh-cChHHHHHHHHHcC-----CCEEEEcHHHHHHHHHHHHHh
Confidence 63 211 11225678888888 999999999999999998863
No 65
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.38 E-value=8.3e-13 Score=111.87 Aligned_cols=86 Identities=21% Similarity=0.385 Sum_probs=61.6
Q ss_pred EEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCc-c--chHHH
Q 025574 63 IGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG-L--YYAIV 139 (250)
Q Consensus 63 IGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~-~--~~~~~ 139 (250)
|||++.+++.. ...+++++.|++++.+.. .+ .++++|+||+|||+.... . +....
T Consensus 1 igvl~~qg~~~---------------e~~~~l~~~g~~v~~v~~---~~----~l~~~dgiii~Gg~~~~~~~~~~~~~~ 58 (183)
T cd01749 1 IGVLALQGDFR---------------EHIRALERLGVEVIEVRT---PE----DLEGIDGLIIPGGESTTIGKLLRRTGL 58 (183)
T ss_pred CEEEEecCCcH---------------HHHHHHHHCCCeEEEECC---HH----HhccCCEEEECCchHHHHHHHHHhCCH
Confidence 78888776521 233899999999888864 22 267899999999986211 0 00112
Q ss_pred HHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCc
Q 025574 140 EKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKD 175 (250)
Q Consensus 140 ~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~ 175 (250)
.+.++.+.+++ +|+||||.|+|+|+..+++.
T Consensus 59 ~~~i~~~~~~g-----~PvlGiC~G~qlL~~~~~~~ 89 (183)
T cd01749 59 LDPLREFIRAG-----KPVFGTCAGLILLAKEVEDQ 89 (183)
T ss_pred HHHHHHHHHcC-----CeEEEECHHHHHHHHHhccc
Confidence 35567677777 99999999999999999873
No 66
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.36 E-value=3.4e-12 Score=124.20 Aligned_cols=135 Identities=14% Similarity=0.167 Sum_probs=82.8
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccch--HH--HHHHHHHHHHhCCCCCCceEEcccc
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY--AI--VEKVFKKILEKNDAGDHFPLYAHCL 163 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~--~~--~~~li~~~~~~~~~g~~~PILGICl 163 (250)
.+..+++++.|+++..+. +++ .++.+|+||||||++....+. .. ..+.++.+++.+ +|+||||+
T Consensus 20 ~sl~~al~~~G~~v~~v~---~~~----~l~~~D~lIlpG~gs~~~~m~~L~~~gl~~~i~~~i~~g-----~PvLGIC~ 87 (538)
T PLN02617 20 RSVRNAIRHLGFTIKDVQ---TPE----DILNADRLIFPGVGAFGSAMDVLNNRGMAEALREYIQND-----RPFLGICL 87 (538)
T ss_pred HHHHHHHHHCCCeEEEEC---Chh----hhccCCEEEECCCCCHHHHHHHHHHcCHHHHHHHHHHcC-----CCEEEECH
Confidence 567889999999987774 233 267899999999887533221 11 234566666777 99999999
Q ss_pred hhHHHHHHh--cCcccccccccC--------------CCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecc
Q 025574 164 GFELLTMII--SKDKNILESFNA--------------ADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHV 227 (250)
Q Consensus 164 G~QlL~~~~--GG~~~~l~~~~~--------------~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~ 227 (250)
|||+|+... +|....++.++. +.++.++.. ..+++||.+++ +..+|++|+|
T Consensus 88 G~QlLa~~~~E~g~~~glg~l~G~v~~~~~~~~~~vp~iGw~~V~~----~~~spL~~~l~---------~~~vy~vHSy 154 (538)
T PLN02617 88 GLQLLFESSEENGPVEGLGVIPGVVGRFDSSNGLRVPHIGWNALQI----TKDSELLDGVG---------GRHVYFVHSY 154 (538)
T ss_pred HHHHHhhhhhhcCCccCcccccceEEECCccCCCCCCeecceEEEe----cCCChhHhcCC---------CcEEEEEeEE
Confidence 999999874 233233332221 112222222 11466777664 2358999999
Q ss_pred cccc----ce-EEEEeecCCCeEEEee
Q 025574 228 RPCT----IN-LLSTSVARFNCLKILK 249 (250)
Q Consensus 228 ~V~~----f~-vlA~s~D~~g~~Fvs~ 249 (250)
.+.+ .. +++++ + ++..|+++
T Consensus 155 ~v~~~p~~~~~v~a~~-~-~g~~~IaA 179 (538)
T PLN02617 155 RATPSDENKDWVLATC-N-YGGEFIAS 179 (538)
T ss_pred EEEecCCCCcEEEEEE-c-cCCCcEEE
Confidence 8753 33 44444 3 33346654
No 67
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.36 E-value=1.4e-11 Score=107.89 Aligned_cols=90 Identities=19% Similarity=0.382 Sum_probs=64.6
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCcc----ch-
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGL----YY- 136 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~----~~- 136 (250)
.|+|+..|+.++ ..+++++++++|+.++.+++... .++++|+||+|||...... ..
T Consensus 2 ~v~Vl~~~G~n~-------------~~~~~~al~~~G~~~~~i~~~~~------~l~~~d~lilpGG~~~~d~~~~~~~~ 62 (227)
T TIGR01737 2 KVAVIRFPGTNC-------------DRDTVYALRLLGVDAEIVWYEDG------SLPDYDGVVLPGGFSYGDYLRAGAIA 62 (227)
T ss_pred eEEEEeCCCcCc-------------HHHHHHHHHHCCCeEEEEecCCC------CCCCCCEEEECCCCcccccccccchh
Confidence 589998887543 24467899999999988876432 1678999999999753111 11
Q ss_pred --HHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH--hcCc
Q 025574 137 --AIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI--ISKD 175 (250)
Q Consensus 137 --~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~--~GG~ 175 (250)
....++++.+.+.+ +||+|||.|+|+|+.+ ++|.
T Consensus 63 ~~~~~~~~l~~~~~~g-----~pvlgIC~G~QlLa~~GlL~G~ 100 (227)
T TIGR01737 63 AASPIMQEVREFAEKG-----VPVLGICNGFQILVEAGLLPGA 100 (227)
T ss_pred cchHHHHHHHHHHHcC-----CEEEEECHHHHHHHHcCCCCCc
Confidence 11235566666677 9999999999999995 7775
No 68
>PRK06186 hypothetical protein; Validated
Probab=99.35 E-value=8.1e-12 Score=109.33 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=61.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcC----CeEEEeecCCChhhHH--HhcccCCEEEECCCCCCCccc
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAG----ARVIPLIYNEPEDVLF--EKLELVNGVLYTGGWAKDGLY 135 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G----~~~v~i~~~~~~~~l~--~~l~~~dgvIlpGG~~~~~~~ 135 (250)
.||++.--. ...++|+ |+.++|+.+| .++.+.+.+.+ ++. ..|+.+|||++|||....+ .
T Consensus 3 ~IalVGKY~---------~~~daY~--Sv~eal~ha~~~~~~~~~i~wi~s~--~l~~~~~l~~~dgilvpgGfg~rg-~ 68 (229)
T PRK06186 3 RIALVGDYN---------PDVTAHQ--AIPLALDLAAAVLGLPVDYEWLPTP--EITDPEDLAGFDGIWCVPGSPYRN-D 68 (229)
T ss_pred EEEEEECCc---------CCcHHHH--HHHHHHHHHHHhcCCeeEEEEEchh--hcCChhhHhhCCeeEeCCCCCccc-H
Confidence 577766332 2445664 5667777654 56655555432 221 2578999999999976322 1
Q ss_pred hHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcC
Q 025574 136 YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISK 174 (250)
Q Consensus 136 ~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG 174 (250)
.+ .-..+++|.+.+ +|+||||+|||++...++.
T Consensus 69 ~G-ki~ai~~Are~~-----iP~LGIClGmQ~avIe~ar 101 (229)
T PRK06186 69 DG-ALTAIRFARENG-----IPFLGTCGGFQHALLEYAR 101 (229)
T ss_pred hH-HHHHHHHHHHcC-----CCeEeechhhHHHHHHHHh
Confidence 11 226789999999 9999999999987776544
No 69
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.31 E-value=2.9e-11 Score=116.76 Aligned_cols=100 Identities=22% Similarity=0.350 Sum_probs=69.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCC----eEEEeecCCCh---hhHHHhcccCCEEEECCCCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA----RVIPLIYNEPE---DVLFEKLELVNGVLYTGGWAK 131 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~----~~v~i~~~~~~---~~l~~~l~~~dgvIlpGG~~~ 131 (250)
.+-.||++.--.. ..++| .|+.++|+.+|+ ++.+.+.++.. +...+.++.+||||+|||...
T Consensus 287 ~~v~IalVGKY~~---------l~DaY--~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~ 355 (533)
T PRK05380 287 GEVTIALVGKYVE---------LPDAY--KSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGE 355 (533)
T ss_pred CceEEEEEeCccC---------CcHHH--HHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCc
Confidence 4567999874422 34555 467778877764 45555554321 113356889999999999763
Q ss_pred CccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcc
Q 025574 132 DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDK 176 (250)
Q Consensus 132 ~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~ 176 (250)
.. ......+++++.+.+ +|+||||+|||+|+.++||+.
T Consensus 356 ~~--~~g~i~~i~~a~e~~-----iPiLGIClGmQll~va~Ggnv 393 (533)
T PRK05380 356 RG--IEGKILAIRYARENN-----IPFLGICLGMQLAVIEFARNV 393 (533)
T ss_pred cc--cccHHHHHHHHHHCC-----CcEEEEchHHHHHHHHhcccc
Confidence 21 112236788888888 999999999999999999984
No 70
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.27 E-value=5.1e-11 Score=101.26 Aligned_cols=86 Identities=16% Similarity=0.341 Sum_probs=60.9
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCc-cchH--H
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG-LYYA--I 138 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~-~~~~--~ 138 (250)
.|||+.-.++ ..+..++|+++|++++.+. ++++ ++++|+|++|||....- .... .
T Consensus 1 ~igvl~~qg~---------------~~e~~~~l~~~g~~~~~v~---~~~~----l~~~d~liipGG~~~~~~~l~~~~~ 58 (184)
T TIGR03800 1 KIGVLALQGA---------------VREHARALEALGVEGVEVK---RPEQ----LDEIDGLIIPGGESTTLSRLLDKYG 58 (184)
T ss_pred CEEEEEccCC---------------HHHHHHHHHHCCCEEEEEC---ChHH----hccCCEEEECCCCHHHHHHHHHhcc
Confidence 3889887765 2346689999999988875 2332 67899999999965210 0001 1
Q ss_pred HHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcC
Q 025574 139 VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISK 174 (250)
Q Consensus 139 ~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG 174 (250)
....++.+.+.+ +|+||||.|||+|+..+.+
T Consensus 59 l~~~i~~~~~~g-----~pilGIC~G~qlL~~~~~~ 89 (184)
T TIGR03800 59 MFEPLRNFILSG-----LPVFGTCAGLIMLAKEIIG 89 (184)
T ss_pred HHHHHHHHHHcC-----CcEEEECHHHHHHHhhhcc
Confidence 234566666777 9999999999999999743
No 71
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.26 E-value=4.3e-11 Score=119.68 Aligned_cols=124 Identities=16% Similarity=0.222 Sum_probs=88.0
Q ss_pred ccccccccccCCCCCCCCCCC-cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcc
Q 025574 40 VSSLSVLVPRCPVPDSKLNYR-PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLE 118 (250)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~-PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~ 118 (250)
...+++++|||..|.-....| ++|-++-... ....+++|.+.|+++.++|++.+.+. .
T Consensus 151 n~~nLvs~VS~Kep~~y~~Gk~~~I~aiDcG~----------------K~N~IRcL~~RGa~vtVvPw~~~i~~-----~ 209 (1435)
T KOG0370|consen 151 NKRNLVSQVSTKEPKVYGDGKSLRILAIDCGL----------------KYNQIRCLVKRGAEVTVVPWDYPIAK-----E 209 (1435)
T ss_pred CcccchhhheeccceEEcCCcccEEEEcccCc----------------hHHHHHHHHHhCceEEEecCCccccc-----c
Confidence 345788999999887776554 4454443332 23467899999999999999876442 3
Q ss_pred cCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcccccccccCCCceeee
Q 025574 119 LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTL 191 (250)
Q Consensus 119 ~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi 191 (250)
++|||+|++||. +|......-.-+++.++.+ +||+|||+|||+|+.+.|+++..+ ++..++++.|.
T Consensus 210 ~yDGlflSNGPG-dPe~~~~~v~~vr~lL~~~-----~PvfGIClGHQllA~AaGakT~Km-KyGNRGhNiP~ 275 (1435)
T KOG0370|consen 210 EYDGLFLSNGPG-DPELCPLLVQNVRELLESN-----VPVFGICLGHQLLALAAGAKTYKM-KYGNRGHNIPC 275 (1435)
T ss_pred ccceEEEeCCCC-CchhhHHHHHHHHHHHhCC-----CCeEEEehhhHHHHHhhCCceEEe-eccccCCCccc
Confidence 799999999998 4544443333456666666 999999999999999999985333 45555544454
No 72
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.25 E-value=1e-11 Score=116.13 Aligned_cols=127 Identities=15% Similarity=0.220 Sum_probs=85.8
Q ss_pred HHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHH
Q 025574 91 VKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (250)
Q Consensus 91 v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~ 170 (250)
-+.+++......++|.+.+...+.+ ..+.|||++|||.. .|...+..+-..+++.+ +||||||+|||+|+.
T Consensus 33 ~RrvRel~v~se~~p~~t~~~~i~~--~~~rgiIiSGGP~S--Vya~dAP~~dp~if~~~-----vpvLGICYGmQ~i~~ 103 (552)
T KOG1622|consen 33 DRRVRELNVQSEILPLTTPAKTITE--YGPRGIIISGGPNS--VYAEDAPSFDPAIFELG-----VPVLGICYGMQLINK 103 (552)
T ss_pred HHHHHHHhhhhhhccCCChhhhhhc--CCceEEEEeCCCCc--cccCcCCCCChhHhccC-----CcceeehhHHHHHHH
Confidence 3578888887888888887776654 36889999999962 12111111223334567 999999999999999
Q ss_pred HhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc----ceEEEEe
Q 025574 171 IISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT----INLLSTS 238 (250)
Q Consensus 171 ~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~----f~vlA~s 238 (250)
.+||.+ ......+++...+.... ...||+++-.... -.++-.|++.+.. |+|.|++
T Consensus 104 ~~Gg~V--~~~~~RE~G~~eI~v~~----~~~lF~~~~~~~~------~~VlltHgdsl~~v~~g~kv~a~s 163 (552)
T KOG1622|consen 104 LNGGTV--VKGMVREDGEDEIEVDD----SVDLFSGLHKTEF------MTVLLTHGDSLSKVPEGFKVVAFS 163 (552)
T ss_pred HhCCcc--ccccccCCCCceEEcCc----hhhhhhhhcccce------eeeeeccccchhhccccceeEEee
Confidence 999984 33333455555554321 3458887654321 0356689999986 9999999
No 73
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=6.4e-11 Score=112.71 Aligned_cols=150 Identities=13% Similarity=0.188 Sum_probs=92.7
Q ss_pred CcchhhHHHHHHHHHHc-CCeEE-EeecCCChhhHHHhccc---CCEEEECCCCCCC--ccchHHHHHHHHHHHHhCCCC
Q 025574 81 TNASYIAASYVKFVESA-GARVI-PLIYNEPEDVLFEKLEL---VNGVLYTGGWAKD--GLYYAIVEKVFKKILEKNDAG 153 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~-G~~~v-~i~~~~~~~~l~~~l~~---~dgvIlpGG~~~~--~~~~~~~~~li~~~~~~~~~g 153 (250)
.++||... +++.|+.. |.-+| ++..+...++.-+.+.+ +|+|++..||+.. +.+.+...++++.+ +.
T Consensus 22 ~YDSyTfN-iy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~gI~~rl~~~~--~~--- 95 (767)
T KOG1224|consen 22 NYDSYTFN-IYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADIGICLRLLLEC--RD--- 95 (767)
T ss_pred cccchhhh-HHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcHHHHHHHHHHHHhc--CC---
Confidence 56777653 67788775 33333 33333333333333444 8999999999842 22232222333332 22
Q ss_pred CCceEEcccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc--
Q 025574 154 DHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT-- 231 (250)
Q Consensus 154 ~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~-- 231 (250)
+||||||+|||.|+.+.|.++. ....+.|++...++.. +.-+|.++|+.- ....-++.||+..+.+
T Consensus 96 --iPilGICLGfQal~l~hGA~v~-~~n~p~HGrvs~i~~~-----~~~~f~gi~sg~----~~~fK~~RYHSL~in~~p 163 (767)
T KOG1224|consen 96 --IPILGICLGFQALGLVHGAHVV-HANEPVHGRVSGIEHD-----GNILFSGIPSGR----NSDFKVVRYHSLIINSLP 163 (767)
T ss_pred --CceeeeehhhHhHhhhccccee-cCCCcccceeeeEEec-----CcEEEccCCCCC----cccceeEEeEEEEecCCc
Confidence 9999999999999999999854 3334556665556543 334555555321 1222478899999987
Q ss_pred ---ceEEEEeecCCCeEEEe
Q 025574 232 ---INLLSTSVARFNCLKIL 248 (250)
Q Consensus 232 ---f~vlA~s~D~~g~~Fvs 248 (250)
..+++++.|++|...-+
T Consensus 164 id~l~il~t~~ddng~ilMs 183 (767)
T KOG1224|consen 164 IDLLPILWTIYDDNGHILMS 183 (767)
T ss_pred hhhhcceeEeecCCceEEEE
Confidence 78888888888865444
No 74
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.20 E-value=1.1e-10 Score=102.94 Aligned_cols=94 Identities=19% Similarity=0.297 Sum_probs=66.4
Q ss_pred EEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccc------h
Q 025574 63 IGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLY------Y 136 (250)
Q Consensus 63 IGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~------~ 136 (250)
|+|+..|+.++. .+++++++++|+.+++++.....+ ....++++|+||||||....... .
T Consensus 1 v~vl~~pG~n~~-------------~~~~~al~~aG~~v~~v~~~~~~~-~~~~l~~~d~liipGG~~~~d~l~~~~~~~ 66 (238)
T cd01740 1 VAVLRFPGSNCD-------------RDMAYAFELAGFEAEDVWHNDLLA-GRKDLDDYDGVVLPGGFSYGDYLRAGAIAA 66 (238)
T ss_pred CEEEEcCCcCCH-------------HHHHHHHHHcCCCEEEEeccCCcc-ccCCHhhCCEEEECCCCCcccccccccccc
Confidence 478888876552 457789999999999888654211 11236789999999997632111 1
Q ss_pred H-H-HHHHHHHHHHhCCCCCCceEEcccchhHHHHHH--hcCc
Q 025574 137 A-I-VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI--ISKD 175 (250)
Q Consensus 137 ~-~-~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~--~GG~ 175 (250)
. . ..++++.+.+++ +||||||.|+|+|+.+ ++|+
T Consensus 67 ~~~~~~~~l~~~~~~g-----~pvlGIC~G~QlL~~~gll~g~ 104 (238)
T cd01740 67 ASPLLMEEVKEFAERG-----GLVLGICNGFQILVELGLLPGA 104 (238)
T ss_pred cChhHHHHHHHHHhCC-----CeEEEECcHHHHHHHcCCCccc
Confidence 1 1 336667777777 9999999999999997 6665
No 75
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.18 E-value=1.1e-10 Score=104.34 Aligned_cols=95 Identities=16% Similarity=0.276 Sum_probs=66.6
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCC-Cccch
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK-DGLYY 136 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~-~~~~~ 136 (250)
++++.|+|+..|+.++. .+.+++++++|+.+..+++....+ ....++++|+|++|||... +....
T Consensus 1 ~~~~kvaVl~~pG~n~d-------------~e~~~Al~~aG~~v~~v~~~~~~~-~~~~l~~~DgLvipGGfs~gD~l~~ 66 (261)
T PRK01175 1 MESIRVAVLRMEGTNCE-------------DETVKAFRRLGVEPEYVHINDLAA-ERKSVSDYDCLVIPGGFSAGDYIRA 66 (261)
T ss_pred CCCCEEEEEeCCCCCCH-------------HHHHHHHHHCCCcEEEEeeccccc-cccchhhCCEEEECCCCCccccccc
Confidence 35789999999987542 245689999999998887643111 1223678999999999642 21111
Q ss_pred -----HH----HHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 137 -----AI----VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 137 -----~~----~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
.. ..+.++.+++++ +||||||+|+|+|+.+
T Consensus 67 g~~~~~~l~~~l~~~Ik~f~~~g-----kpVLGICnG~QlLa~~ 105 (261)
T PRK01175 67 GAIFAARLKAVLRKDIEEFIDEG-----YPIIGICNGFQVLVEL 105 (261)
T ss_pred chhhHHHHHHHHHHHHHHHHHCC-----CeEEEECHHHHHHHHC
Confidence 11 125567777777 9999999999999985
No 76
>PLN02327 CTP synthase
Probab=99.15 E-value=8.6e-10 Score=106.91 Aligned_cols=99 Identities=18% Similarity=0.268 Sum_probs=64.6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHc----CCeEEEeecCCC---hhh----------HHHhcccCCE
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA----GARVIPLIYNEP---EDV----------LFEKLELVNG 122 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~----G~~~v~i~~~~~---~~~----------l~~~l~~~dg 122 (250)
.-.||++.--. ...++|. |+.++|+.+ +..+.+.+.++. ++. +.+.++++||
T Consensus 297 ~v~IalVGKY~---------~l~DAY~--Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DG 365 (557)
T PLN02327 297 PVRIAMVGKYT---------GLSDSYL--SVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADG 365 (557)
T ss_pred ceEEEEEeccc---------CCcHhHH--HHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCE
Confidence 45788887432 2345563 456666655 456655555431 111 2245788999
Q ss_pred EEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcc
Q 025574 123 VLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDK 176 (250)
Q Consensus 123 vIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~ 176 (250)
|++|||+.. ....+. ...++++.+.+ +|+||||+|||+++..++.+.
T Consensus 366 IvvpGGfG~-~~~~G~-i~ai~~are~~-----iP~LGIClGmQl~viefaRnv 412 (557)
T PLN02327 366 ILVPGGFGD-RGVEGK-ILAAKYARENK-----VPYLGICLGMQIAVIEFARSV 412 (557)
T ss_pred EEeCCCCCC-cccccH-HHHHHHHHHcC-----CCEEEEcHHHHHHHHHHHHhh
Confidence 999999752 222222 24567887878 999999999999999998763
No 77
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.14 E-value=2.2e-10 Score=99.25 Aligned_cols=88 Identities=25% Similarity=0.459 Sum_probs=63.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcc-cCCEEEECCCCCCCccchH
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLE-LVNGVLYTGGWAKDGLYYA 137 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~-~~dgvIlpGG~~~~~~~~~ 137 (250)
.+|.|+|+..|+.++. ...+.+++++|++++.+++.+. .+. ++|+|++|||.++ ++|.+
T Consensus 1 ~~~kvaVi~fpGtN~d-------------~d~~~A~~~aG~~~~~V~~~d~------~~~~~~d~vv~pGGFSy-GDyLr 60 (231)
T COG0047 1 ARPKVAVLRFPGTNCD-------------YDMAAAFERAGFEAEDVWHSDL------LLGRDFDGVVLPGGFSY-GDYLR 60 (231)
T ss_pred CCceEEEEEcCCcCch-------------HHHHHHHHHcCCCceEEEeeec------ccCCCccEEEEcCCCCc-ccccC
Confidence 4799999999998663 2355688999999998887542 144 6999999999885 23332
Q ss_pred -----HHHHH---HHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 138 -----IVEKV---FKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 138 -----~~~~l---i~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
....+ ++.+.+++ +|+||||.|||+|.++
T Consensus 61 ~Gaiaa~~~v~~~v~~~a~~g-----~~vLGICNGfQiL~e~ 97 (231)
T COG0047 61 AGAIAAIAPVMDEVREFAEKG-----KPVLGICNGFQILSEA 97 (231)
T ss_pred cchHHhhHHHHHHHHHHHHCC-----CeEEEEcchhHHHHHc
Confidence 12233 33333455 9999999999999964
No 78
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.11 E-value=3.9e-10 Score=96.14 Aligned_cols=135 Identities=14% Similarity=0.180 Sum_probs=83.9
Q ss_pred HHHHHHHcCCeEEEeecCCC--hhhHHHhcccCCEEEECCCCCC---CccchHHHHHHHHHHHHhCCCCCCceEEcccch
Q 025574 90 YVKFVESAGARVIPLIYNEP--EDVLFEKLELVNGVLYTGGWAK---DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~~--~~~l~~~l~~~dgvIlpGG~~~---~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG 164 (250)
++..+.+-|-.....+.... ++ .+.++++||++++|.... +.+|......++++....+ +||+|||.|
T Consensus 30 fvsllg~ege~wd~frV~~gefP~--~~Dl~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mk-----kkvlGICFG 102 (245)
T KOG3179|consen 30 FVSLLGDEGEQWDLFRVIDGEFPQ--EEDLEKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMK-----KKVLGICFG 102 (245)
T ss_pred HHHHhcccCceeEEEEEecCCCCC--hhhhhhhceEEEeCCcccccccchHHHHHHHHHHHHHhhc-----cceEEEecc
Confidence 55667666754443332211 11 123778999999998752 3455555557788887777 999999999
Q ss_pred hHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc----ceEEEEeec
Q 025574 165 FELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT----INLLSTSVA 240 (250)
Q Consensus 165 ~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~----f~vlA~s~D 240 (250)
||+++.+.||++ +..+...+-.-..+.......+....|..+|..+. ....|.+.|-. ++++|.|.+
T Consensus 103 HQiiara~Gg~V-gra~KG~~~~lg~itivk~~~~~~~yFG~~~~~l~--------IikcHqDevle~PE~a~llasSe~ 173 (245)
T KOG3179|consen 103 HQIIARAKGGKV-GRAPKGPDLGLGSITIVKDAEKPEKYFGEIPKSLN--------IIKCHQDEVLELPEGAELLASSEK 173 (245)
T ss_pred HHHHHHhhCCcc-ccCCCCCcccccceEEEEecccchhhcccchhhhh--------HHhhcccceecCCchhhhhccccc
Confidence 999999999984 33322211111112222221224568887776543 44578888754 888988855
No 79
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.09 E-value=2.2e-10 Score=104.34 Aligned_cols=141 Identities=13% Similarity=0.111 Sum_probs=89.6
Q ss_pred HHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHH----HHHHHHHHHHhCCCCCCceEEccc
Q 025574 87 AASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI----VEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 87 ~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~----~~~li~~~~~~~~~g~~~PILGIC 162 (250)
.+|+.++++.+|..+..+.. +.+ +.+.|.+||||.+.+.+.+... ..+-+++-++.+ +|++|||
T Consensus 14 ~~si~nal~hlg~~i~~v~~---P~D----I~~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~Yiesg-----kPfmgic 81 (541)
T KOG0623|consen 14 VRSIRNALRHLGFSIKDVQT---PGD----ILNADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIESG-----KPFMGIC 81 (541)
T ss_pred HHHHHHHHHhcCceeeeccC---chh----hccCceEeecCcccchHHHHHHhhhhhHHHHHHHHhcC-----CCeEeeh
Confidence 36788899999998876642 332 5678999999999875544322 234445555777 9999999
Q ss_pred chhHHHHHH--hcCccccc-------ccccCCCceee-eeeeec-CCCCCcccccCChhhhhhcCCccceeeeecccccc
Q 025574 163 LGFELLTMI--ISKDKNIL-------ESFNAADQAST-LQFMEN-TSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT 231 (250)
Q Consensus 163 lG~QlL~~~--~GG~~~~l-------~~~~~~~~~~p-i~~~~~-~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~ 231 (250)
.|.|+|..- +.+...+| .+|+......| +.|+.- ..+++.+|...|. ..+||.|+|-...
T Consensus 82 vGlQaLF~gSvE~p~skGLgvipg~v~RFD~s~k~VPhIGWNsc~v~sd~effg~~p~---------~~~YFVHSyl~~e 152 (541)
T KOG0623|consen 82 VGLQALFDGSVENPPSKGLGVIPGIVGRFDASAKIVPHIGWNSCQVGSDSEFFGDVPN---------RHVYFVHSYLNRE 152 (541)
T ss_pred hhHHHHhcccccCCCcCcccccccceecccCCCCcCCcccccccccCCcccccccCCC---------ceEEEEeeecccc
Confidence 999999863 22222233 34444433444 467652 3335666665553 3689999994432
Q ss_pred ---------ceEEEEeecCCCeEEEeeC
Q 025574 232 ---------INLLSTSVARFNCLKILKL 250 (250)
Q Consensus 232 ---------f~vlA~s~D~~g~~Fvs~~ 250 (250)
|+ +|++ .++..+||++|
T Consensus 153 k~~~len~~wk-iat~-kYG~E~Fi~ai 178 (541)
T KOG0623|consen 153 KPKSLENKDWK-IATC-KYGSESFISAI 178 (541)
T ss_pred cccCCCCCCce-Eeee-ccCcHHHHHHH
Confidence 55 4455 33338898875
No 80
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.07 E-value=5.4e-10 Score=94.51 Aligned_cols=84 Identities=13% Similarity=0.210 Sum_probs=57.2
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCc-cchHH
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG-LYYAI 138 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~-~~~~~ 138 (250)
...|||++-+++. ....++++++|++++.+. ++++ ++++|+||||||....- ...+.
T Consensus 2 ~~~igVLalqG~~---------------~Eh~~al~~lG~~v~~v~---~~~~----l~~~D~LILPGG~~t~~~~ll~~ 59 (179)
T PRK13526 2 TQKVGVLAIQGGY---------------QKHADMFKSLGVEVKLVK---FNND----FDSIDRLVIPGGESTTLLNLLNK 59 (179)
T ss_pred CcEEEEEECCccH---------------HHHHHHHHHcCCcEEEEC---CHHH----HhCCCEEEECCChHHHHHHHhhh
Confidence 3679999988762 236789999999877764 3443 57899999999854210 11111
Q ss_pred --HHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 139 --VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 139 --~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
..+.++...+ + +|++|||.|||+|+..
T Consensus 60 ~~l~~~Ik~~~~-~-----kpilGICaG~qlL~~~ 88 (179)
T PRK13526 60 HQIFDKLYNFCS-S-----KPVFGTCAGSIILSKG 88 (179)
T ss_pred cCcHHHHHHHHc-C-----CcEEEEcHHHHHHHcc
Confidence 1234444332 4 8999999999999984
No 81
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.02 E-value=1.4e-09 Score=98.89 Aligned_cols=108 Identities=10% Similarity=0.146 Sum_probs=74.1
Q ss_pred ccCCEEEECCCCCC-----CccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCccccccccc-CCCceeee
Q 025574 118 ELVNGVLYTGGWAK-----DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFN-AADQASTL 191 (250)
Q Consensus 118 ~~~dgvIlpGG~~~-----~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~-~~~~~~pi 191 (250)
+.+||+|++|.+.. +-+|..+..++++++.+.. +|+||||.|+|+++.++||... ...+ ...+..+.
T Consensus 98 ~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~~~-----~s~LgICwGaQa~a~algGi~k--~~~~~K~~Gv~~~ 170 (302)
T PRK05368 98 EKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKTHV-----TSTLFICWAAQAALYHLYGIPK--YTLPEKLSGVFEH 170 (302)
T ss_pred CCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHHcC-----CCEEEEcHHHHHHHHHcCCCcc--CCCCCceeEEEEE
Confidence 57899999999953 3355556778899998877 9999999999999999999511 1111 22232333
Q ss_pred eeeecCCCCCcccccCChhhhhhcCCccceeeeeccccc------c--ceEEEEeecCCCe
Q 025574 192 QFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPC------T--INLLSTSVARFNC 244 (250)
Q Consensus 192 ~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~------~--f~vlA~s~D~~g~ 244 (250)
.... . .++|++++|+.|. +-+.|...|. + .+|+|.| +..|.
T Consensus 171 ~~~~--~-~~pL~~g~~d~F~--------~phSr~~~V~~~~i~~~~~l~vLA~S-~~~gv 219 (302)
T PRK05368 171 RVLD--P-HHPLLRGFDDSFL--------VPHSRYTEVREEDIRAATGLEILAES-EEAGV 219 (302)
T ss_pred EEcC--C-CChhhcCCCCccc--------cceeehhhccHHHhccCCCCEEEecC-CCCCe
Confidence 3321 2 5689999987664 4556666663 1 8899988 44554
No 82
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=98.97 E-value=6.7e-09 Score=90.52 Aligned_cols=90 Identities=22% Similarity=0.384 Sum_probs=63.7
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHH-HcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCc-----cc
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVE-SAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG-----LY 135 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le-~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~-----~~ 135 (250)
.|+|+..|+.++ ..+..++++ .+|+++..++... . .++.+|+|++|||..... ..
T Consensus 2 ~v~Vl~~~G~n~-------------~~d~~~a~~~~~G~~~~~v~~~~--~----~l~~~D~lvipGG~~~~d~l~~~~~ 62 (219)
T PRK03619 2 KVAVIVFPGSNC-------------DRDMARALRDLLGAEPEYVWHKE--T----DLDGVDAVVLPGGFSYGDYLRCGAI 62 (219)
T ss_pred EEEEEecCCcCh-------------HHHHHHHHHhcCCCeEEEEecCc--C----CCCCCCEEEECCCCchhhhhccchh
Confidence 589999887643 234567898 8999888776532 1 267899999999975311 11
Q ss_pred h--HHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH--hcCc
Q 025574 136 Y--AIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI--ISKD 175 (250)
Q Consensus 136 ~--~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~--~GG~ 175 (250)
. .....+++.+.+++ +|++|||.|+|+|+.+ ++|+
T Consensus 63 ~~~~~~~~~l~~~~~~g-----~~ilgIC~G~qlLa~~GLL~g~ 101 (219)
T PRK03619 63 AAFSPIMKAVKEFAEKG-----KPVLGICNGFQILTEAGLLPGA 101 (219)
T ss_pred hhchHHHHHHHHHHHCC-----CEEEEECHHHHHHHHcCCCCCe
Confidence 1 12235566666666 9999999999999996 6665
No 83
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=98.88 E-value=3.4e-08 Score=93.90 Aligned_cols=95 Identities=24% Similarity=0.362 Sum_probs=61.8
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCC----eEEEeecCCC---hhhHHHhcccCCEEEECCCCCCCc
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA----RVIPLIYNEP---EDVLFEKLELVNGVLYTGGWAKDG 133 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~----~~v~i~~~~~---~~~l~~~l~~~dgvIlpGG~~~~~ 133 (250)
-.||++.---+ ..++|+ |.+.+|+.+|+ ++.+.+.++. .+......+.+|||++|||....+
T Consensus 289 v~IalVGKYv~---------l~DaY~--Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~~dgIlVPGGFG~RG 357 (533)
T COG0504 289 VTIALVGKYVE---------LPDAYK--SVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKLVDGILVPGGFGYRG 357 (533)
T ss_pred eEEEEEECCcC---------chhHHH--HHHHHHHhhhhhcCCceeeEEEccccccccchhhhhhcCCEEEeCCCCCcCc
Confidence 56999875432 445664 57778887763 4555554432 111111111299999999987432
Q ss_pred cchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhc
Q 025574 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIIS 173 (250)
Q Consensus 134 ~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~G 173 (250)
+.+. -..+++|.+.+ +|+||||+|||+....+.
T Consensus 358 -~eGk-I~Ai~yAREn~-----iP~lGIClGmQ~aviE~A 390 (533)
T COG0504 358 -VEGK-IAAIRYARENN-----IPFLGICLGMQLAVIEFA 390 (533)
T ss_pred -hHHH-HHHHHHHHhcC-----CCEEEEchhHHHHHHHHH
Confidence 1111 26689999988 999999999999998753
No 84
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.80 E-value=1.6e-08 Score=86.47 Aligned_cols=73 Identities=15% Similarity=0.132 Sum_probs=53.8
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchH----HHHHHHHHHHHhCCCCCCceEEcccc
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA----IVEKVFKKILEKNDAGDHFPLYAHCL 163 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~----~~~~li~~~~~~~~~g~~~PILGICl 163 (250)
.++.++++..|++++.+....+ ++.+|+|+||||......... ...+.++.+.+++ +||||||.
T Consensus 13 ~~l~~~~~~~G~~~~~~~~~~~-------~~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g-----~pvlgiC~ 80 (194)
T cd01750 13 TDLDPLAREPGVDVRYVEVPEG-------LGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAG-----GPVLGICG 80 (194)
T ss_pred HHHHHHHhcCCceEEEEeCCCC-------CCCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCC-----CcEEEECH
Confidence 4567789999999998875432 457899999999864222211 1234556666667 99999999
Q ss_pred hhHHHHHHh
Q 025574 164 GFELLTMII 172 (250)
Q Consensus 164 G~QlL~~~~ 172 (250)
|||+|+...
T Consensus 81 G~qlL~~~~ 89 (194)
T cd01750 81 GYQMLGKYI 89 (194)
T ss_pred HHHHhhhhc
Confidence 999999986
No 85
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.76 E-value=3e-08 Score=85.05 Aligned_cols=82 Identities=20% Similarity=0.370 Sum_probs=55.8
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCC-ccchHH---HHHHHHHHHHhCCCCCCc
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD-GLYYAI---VEKVFKKILEKNDAGDHF 156 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~-~~~~~~---~~~li~~~~~~~~~g~~~ 156 (250)
...+|..+...++|+++|++++.+....+ +. +..+|+||||||.... ...... ..+.++.+.+++ +
T Consensus 7 ~aF~f~y~e~~~~l~~~G~~v~~~s~~~~-~~----l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g-----~ 76 (198)
T cd03130 7 EAFNFYYPENLELLEAAGAELVPFSPLKD-EE----LPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESG-----G 76 (198)
T ss_pred CccccccHHHHHHHHHCCCEEEEECCCCC-CC----CCCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcC-----C
Confidence 34556666778899999999988754211 22 4459999999985410 111211 235556666666 9
Q ss_pred eEEcccchhHHHHHHh
Q 025574 157 PLYAHCLGFELLTMII 172 (250)
Q Consensus 157 PILGIClG~QlL~~~~ 172 (250)
||+|||.|||+|....
T Consensus 77 pilgICgG~qlL~~~~ 92 (198)
T cd03130 77 PIYAECGGLMYLGESL 92 (198)
T ss_pred CEEEEcccHHHHHHHh
Confidence 9999999999999974
No 86
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.69 E-value=1.2e-08 Score=91.13 Aligned_cols=93 Identities=19% Similarity=0.316 Sum_probs=57.6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCc-----c
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG-----L 134 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~-----~ 134 (250)
||.|+|+..|+.++. .....+++.+|+++..+..+. .-.-...++++|+|+||||.++.. .
T Consensus 1 kpkV~Vl~~pGtNce-------------~e~~~A~~~aG~~~~~v~~~d-l~~~~~~l~~~~~lvipGGFS~gD~l~sg~ 66 (259)
T PF13507_consen 1 KPKVAVLRFPGTNCE-------------RETAAAFENAGFEPEIVHIND-LLSGESDLDDFDGLVIPGGFSYGDYLRSGA 66 (259)
T ss_dssp --EEEEEE-TTEEEH-------------HHHHHHHHCTT-EEEEEECCH-HHTTS--GCC-SEEEE-EE-GGGGTTSTTH
T ss_pred CCEEEEEECCCCCCH-------------HHHHHHHHHcCCCceEEEEEe-cccccCchhhCcEEEECCccCccccchHHH
Confidence 689999999987652 456779999999999887542 100012478999999999987421 1
Q ss_pred chH-H------HHHHHHHHHHh-CCCCCCceEEcccchhHHHHHH
Q 025574 135 YYA-I------VEKVFKKILEK-NDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 135 ~~~-~------~~~li~~~~~~-~~~g~~~PILGIClG~QlL~~~ 171 (250)
... . ..+-++..+++ + +|+||||.|||+|...
T Consensus 67 ~~a~~~~~~~~~~~~i~~f~~~~g-----~~vLGIcNGfQiL~~~ 106 (259)
T PF13507_consen 67 IAAARLLFNSPLMDAIREFLERPG-----GFVLGICNGFQILVEL 106 (259)
T ss_dssp HHHHHHCCSCCCHHHHHHHHHCTT------EEEEECHHHHHHCCC
T ss_pred HHHHHhhccHHHHHHHHHHHhcCC-----CeEEEEchHhHHHHHh
Confidence 110 0 12345555566 6 9999999999999985
No 87
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=98.66 E-value=9.4e-08 Score=80.60 Aligned_cols=83 Identities=24% Similarity=0.453 Sum_probs=59.3
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcC-CeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHH
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAG-ARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIV 139 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G-~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~ 139 (250)
..|||++-.++ -+..++.++++| +.++.+. .+++ ++.+||||+|||.+. .+.+..
T Consensus 1 m~IGVLalQG~---------------v~EH~~~l~~~~~~e~~~Vk---~~~d----L~~~d~LIiPGGEST--Ti~rL~ 56 (194)
T COG0311 1 MKIGVLALQGA---------------VEEHLEALEKAGGAEVVEVK---RPED----LEGVDGLIIPGGEST--TIGRLL 56 (194)
T ss_pred CeEEEEEeccc---------------HHHHHHHHHhhcCCceEEEc---CHHH----hccCcEEEecCccHH--HHHHHH
Confidence 36999998875 234778999995 8888876 3343 778999999999872 222211
Q ss_pred -----HHHHHHHHHhCCCCCCceEEcccchhHHHHHHh
Q 025574 140 -----EKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (250)
Q Consensus 140 -----~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~ 172 (250)
.+-++...+.+ +|+||+|-||-+|+...
T Consensus 57 ~~~gl~e~l~~~~~~G-----~Pv~GTCAGlIlLakei 89 (194)
T COG0311 57 KRYGLLEPLREFIADG-----LPVFGTCAGLILLAKEI 89 (194)
T ss_pred HHcCcHHHHHHHHHcC-----CceEEechhhhhhhhhh
Confidence 13344444556 99999999999999753
No 88
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=98.64 E-value=4e-07 Score=85.67 Aligned_cols=97 Identities=24% Similarity=0.352 Sum_probs=61.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCC----eEEEeecCC----------Chh---hHHHhcccCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA----RVIPLIYNE----------PED---VLFEKLELVN 121 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~----~~v~i~~~~----------~~~---~l~~~l~~~d 121 (250)
..-.|+++.--- ...++|+ |.+|+|+.++. ...+.+.++ ++. ...+++..+|
T Consensus 297 ~~V~IalVGKYt---------~l~DsY~--Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~ad 365 (585)
T KOG2387|consen 297 VPVRIALVGKYT---------KLSDSYL--SVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSAD 365 (585)
T ss_pred CcEEEEEEeccc---------cchHHHH--HHHHHHHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCC
Confidence 344688876331 2346664 68899887653 333333332 111 1124577899
Q ss_pred EEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhc
Q 025574 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIIS 173 (250)
Q Consensus 122 gvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~G 173 (250)
||++|||.+..+ ..+ .-...++|.+.+ +|.||||||||+-...+.
T Consensus 366 GilvPGGFG~RG-veG-~i~Aak~ARen~-----iP~LGiCLGmQ~AvIEfa 410 (585)
T KOG2387|consen 366 GILVPGGFGDRG-VEG-KILAAKWARENK-----IPFLGICLGMQLAVIEFA 410 (585)
T ss_pred eEEeCCcccccc-hhH-HHHHHHHHHhcC-----CCeEeeehhhhHHHHHHH
Confidence 999999987422 111 114568887877 999999999999887654
No 89
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.59 E-value=1e-07 Score=91.96 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=47.0
Q ss_pred HHHHHHHHcCC-eEEEeecCCChhhHHHhcccCCEEEECCCCCCCc-cchHHHHHHHHHHHHhCCCCCCceEEcccchhH
Q 025574 89 SYVKFVESAGA-RVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (250)
Q Consensus 89 s~v~~le~~G~-~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~-~~~~~~~~li~~~~~~~~~g~~~PILGIClG~Q 166 (250)
|.+++++.+|. .+.++... ++++ +.++|+||||||..... .+ ...+.+.+.+.+ +||||||.|||
T Consensus 10 sv~~al~~lg~~~~~vv~~~-~~~~----l~~~D~lILPGG~~~~~~~l---~~~l~~~i~~~g-----~pvlGICgG~Q 76 (476)
T PRK06278 10 GSLPCFENFGNLPTKIIDEN-NIKE----IKDLDGLIIPGGSLVESGSL---TDELKKEILNFD-----GYIIGICSGFQ 76 (476)
T ss_pred hHHHHHHHhcCCCcEEEEeC-ChHH----hccCCEEEECCCchhhcchH---HHHHHHHHHHcC-----CeEEEEcHHHH
Confidence 45677888886 45554433 3343 67899999999853211 11 224444444555 99999999999
Q ss_pred HHHHHh
Q 025574 167 LLTMII 172 (250)
Q Consensus 167 lL~~~~ 172 (250)
||+...
T Consensus 77 mLg~~~ 82 (476)
T PRK06278 77 ILSEKI 82 (476)
T ss_pred hccccc
Confidence 999864
No 90
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=98.49 E-value=5.2e-07 Score=95.00 Aligned_cols=96 Identities=20% Similarity=0.366 Sum_probs=66.1
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC--------ChhhHHHhcccCCEEEECCCC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--------PEDVLFEKLELVNGVLYTGGW 129 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~--------~~~~l~~~l~~~dgvIlpGG~ 129 (250)
..||.++|+..|+.++. .....+++++|+.+..+.... +.+.+...++++++|++|||.
T Consensus 975 ~~kpkvaIl~~pGtNce-------------~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGF 1041 (1239)
T TIGR01857 975 VEKPRVVIPVFPGTNSE-------------YDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGF 1041 (1239)
T ss_pred CCCCeEEEEECCCCCCH-------------HHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCcc
Confidence 46899999999998763 345568889999887776543 112222346889999999998
Q ss_pred CCCcc------chHH------HHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 130 AKDGL------YYAI------VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 130 ~~~~~------~~~~------~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
+.... |... ..+-++.+++++ .++||||.|||+|...
T Consensus 1042 SyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d-----~~~LGICNGfQ~L~~l 1090 (1239)
T TIGR01857 1042 SAGDEPDGSAKFIAAILRNPKVRVAIDSFLARD-----GLILGICNGFQALVKS 1090 (1239)
T ss_pred CcccccchhHHHHHHHhhChHHHHHHHHHHhCC-----CcEEEechHHHHHHHc
Confidence 75221 1111 123344444555 9999999999999985
No 91
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=98.48 E-value=2.6e-07 Score=78.06 Aligned_cols=97 Identities=7% Similarity=-0.015 Sum_probs=65.3
Q ss_pred cccCCEEEECCCCCC-----CccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcccccccccCCCceeee
Q 025574 117 LELVNGVLYTGGWAK-----DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTL 191 (250)
Q Consensus 117 l~~~dgvIlpGG~~~-----~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi 191 (250)
.+++||+|+||.+.- +-.|..+..++++++.+.. +|+||||.|+|....+++|....... ....+..+.
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v-----~stl~iCWgaqaal~~~yGi~k~~~~-~K~~Gvf~~ 133 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHV-----TSTLFSCWAAMAALYYFYGIKKHQLP-EKIFGVFPH 133 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhC-----cchHHHHHHHHHHHHHHcCcccccCC-CceEEEEEe
Confidence 467999999999862 2356667789999998877 99999999999999999996311111 111122222
Q ss_pred eeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc
Q 025574 192 QFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT 231 (250)
Q Consensus 192 ~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~ 231 (250)
+.. . .++|++++++.|. +-+.|+..|..
T Consensus 134 ~~~---~-~hpL~~g~~d~F~--------~PhSR~~~v~~ 161 (175)
T cd03131 134 TIL---E-PHPLLRGLDDGFD--------VPHSRYAEVDR 161 (175)
T ss_pred eec---C-CCccccCCCCcee--------ecCcccccCCH
Confidence 221 1 5789999986543 44455556653
No 92
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=98.37 E-value=7.5e-07 Score=75.59 Aligned_cols=71 Identities=23% Similarity=0.379 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchH------HHHHHHHHHHHhCCCCCCceEEccc
Q 025574 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA------IVEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~------~~~~li~~~~~~~~~g~~~PILGIC 162 (250)
...+.|+++|++++.++. +++ ++.+||||+|||.+ ..+.. ..+.+-+.+.+.+ +||||+|
T Consensus 10 EH~~~l~~lg~~~~~Vr~---~~d----L~~~dgLIiPGGES--Tti~~ll~~~gL~~~l~~~~~~g~-----~Pv~GTC 75 (188)
T PF01174_consen 10 EHIRMLERLGAEVVEVRT---PED----LEGLDGLIIPGGES--TTIGKLLRRYGLFEPLREFIRSGS-----KPVWGTC 75 (188)
T ss_dssp HHHHHHHHTTSEEEEE-S---GGG----GTT-SEEEE-SS-H--HHHHHHHHHTTHHHHHHHHHHTT-------EEEEET
T ss_pred HHHHHHHHcCCCeEEeCC---HHH----HccCCEEEECCCcH--HHHHHHHHHcCCHHHHHHHHHcCC-----Cceeehh
Confidence 467899999999988863 343 67899999999987 22222 1234444443334 8999999
Q ss_pred chhHHHHHHhc
Q 025574 163 LGFELLTMIIS 173 (250)
Q Consensus 163 lG~QlL~~~~G 173 (250)
-||-||+....
T Consensus 76 AGlIlLa~~v~ 86 (188)
T PF01174_consen 76 AGLILLAKEVE 86 (188)
T ss_dssp HHHHHHEEEEC
T ss_pred HHHHHhhhhhh
Confidence 99999998543
No 93
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=98.27 E-value=4.4e-06 Score=72.33 Aligned_cols=96 Identities=19% Similarity=0.197 Sum_probs=65.3
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHc-CCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccch
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY 136 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~-G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~ 136 (250)
..++.|.++..... ....|+ .++.++++++ |++++.+.... .++..+.++.+|+|++|||... .+.
T Consensus 29 ~~~~~i~~IptAs~---------~~~~~~-~~~~~a~~~l~G~~~~~~~~~~-~~~~~~~l~~ad~I~l~GG~~~--~~~ 95 (212)
T cd03146 29 KARPKVLFVPTASG---------DRDEYT-ARFYAAFESLRGVEVSHLHLFD-TEDPLDALLEADVIYVGGGNTF--NLL 95 (212)
T ss_pred cCCCeEEEECCCCC---------CHHHHH-HHHHHHHhhccCcEEEEEeccC-cccHHHHHhcCCEEEECCchHH--HHH
Confidence 45678888775532 234555 4688899999 99888776432 2233345789999999997431 111
Q ss_pred HH-----HHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 137 AI-----VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 137 ~~-----~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
.. ..++++.+.+++ +|++|||.|+|++...
T Consensus 96 ~~l~~~~l~~~l~~~~~~g-----~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 96 AQWREHGLDAILKAALERG-----VVYIGWSAGSNCWFPS 130 (212)
T ss_pred HHHHHcCHHHHHHHHHHCC-----CEEEEECHhHHhhCCC
Confidence 11 235566666667 9999999999999984
No 94
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.26 E-value=5.3e-06 Score=60.81 Aligned_cols=76 Identities=21% Similarity=0.229 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccc--hHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~--~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
..+.+.+++++..+.+++..............+|+|++|||....... .....+.+++..+++ +|++|+|.|+
T Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~-----~~i~~~c~g~ 89 (115)
T cd01653 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAG-----KPILGICLGA 89 (115)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcC-----CEEEEECchh
Confidence 456778999999998887654321101125679999999998743322 122335556665666 9999999999
Q ss_pred HHH
Q 025574 166 ELL 168 (250)
Q Consensus 166 QlL 168 (250)
|++
T Consensus 90 ~~l 92 (115)
T cd01653 90 QLL 92 (115)
T ss_pred HhH
Confidence 999
No 95
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.23 E-value=4.3e-06 Score=80.26 Aligned_cols=92 Identities=16% Similarity=0.280 Sum_probs=62.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCC--Cccch
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--DGLYY 136 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~--~~~~~ 136 (250)
.++.|||...+- ..|-.....+.|++.|++++.+....+ +. +..+|+|+||||... ...+.
T Consensus 244 ~~~~iava~d~a------------f~f~y~e~~~~L~~~g~~~~~~~~~~~-~~----l~~~D~lilpGG~~~~~~~~l~ 306 (451)
T PRK01077 244 PGVRIAVARDAA------------FNFYYPENLELLRAAGAELVFFSPLAD-EA----LPDCDGLYLGGGYPELFAAELA 306 (451)
T ss_pred CCceEEEEecCc------------ccccHHHHHHHHHHCCCEEEEeCCcCC-CC----CCCCCEEEeCCCchhhHHHHHh
Confidence 347899988662 223334456789999999988754222 22 557899999999641 11111
Q ss_pred H--HHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHh
Q 025574 137 A--IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (250)
Q Consensus 137 ~--~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~ 172 (250)
. ...+.++.+.+.+ +||+|||-|+|+|....
T Consensus 307 ~~~~~~~~i~~~~~~g-----~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 307 ANTSMRASIRAAAAAG-----KPIYAECGGLMYLGESL 339 (451)
T ss_pred hCchhHHHHHHHHHcC-----CCEEEEcHHHHHHHhhh
Confidence 1 1235566666666 99999999999999986
No 96
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.23 E-value=3.9e-06 Score=89.07 Aligned_cols=95 Identities=14% Similarity=0.315 Sum_probs=64.6
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCcc---
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGL--- 134 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~--- 134 (250)
..||.|+|+..|+.++. .....+++.+|+.++.+....-.+. ...+++++||++|||.++...
T Consensus 1035 ~~~pkVaVl~~pGtN~~-------------~e~~~Af~~aGf~~~~V~~~dl~~~-~~~L~~~~glv~pGGFSyGD~l~s 1100 (1307)
T PLN03206 1035 TSKPKVAIIREEGSNGD-------------REMAAAFYAAGFEPWDVTMSDLLNG-RISLDDFRGIVFVGGFSYADVLDS 1100 (1307)
T ss_pred CCCCeEEEEECCCCCCH-------------HHHHHHHHHcCCceEEEEeeecccc-cccccceeEEEEcCcCCCccccch
Confidence 46899999999998663 3456789999998887775421111 123678999999999864211
Q ss_pred ---chHH------HHHHHHHHHHh-CCCCCCceEEcccchhHHHHHH
Q 025574 135 ---YYAI------VEKVFKKILEK-NDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 135 ---~~~~------~~~li~~~~~~-~~~g~~~PILGIClG~QlL~~~ 171 (250)
|... ..+-++.++++ + .++||||.|||+|...
T Consensus 1101 g~~wa~~i~~n~~~~~~~~~f~~~~d-----~~~LGICNGfQiL~~l 1142 (1307)
T PLN03206 1101 AKGWAGSIRFNEPLLQQFQEFYNRPD-----TFSLGVCNGCQLMALL 1142 (1307)
T ss_pred HHHHHHHHHhChHHHHHHHHHHhCCC-----ceEEEEcHHHHHHHHc
Confidence 1111 12224444433 4 9999999999999985
No 97
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.19 E-value=5.4e-06 Score=88.34 Aligned_cols=92 Identities=15% Similarity=0.258 Sum_probs=62.4
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchH
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA 137 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~ 137 (250)
.+||.|+|+..|+.++. .....+++.+|+.+..+....-.+. ...++.++||++|||.++.. +.+
T Consensus 1053 ~~~p~vail~~pG~N~~-------------~e~~~Af~~aGf~~~~v~~~dl~~~-~~~l~~~~~lv~~GGFSygD-~lg 1117 (1310)
T TIGR01735 1053 GVRPKVAILREQGVNGD-------------REMAAAFDRAGFEAWDVHMSDLLAG-RVHLDEFRGLAACGGFSYGD-VLG 1117 (1310)
T ss_pred CCCceEEEEECCCCCCH-------------HHHHHHHHHhCCCcEEEEEeccccC-CcchhheeEEEEcCCCCCcc-chh
Confidence 56899999999988663 3455689999998888775431110 11367889999999987521 222
Q ss_pred H-------------HHHHHHHHH-HhCCCCCCceEEcccchhHHHH
Q 025574 138 I-------------VEKVFKKIL-EKNDAGDHFPLYAHCLGFELLT 169 (250)
Q Consensus 138 ~-------------~~~li~~~~-~~~~~g~~~PILGIClG~QlL~ 169 (250)
. ..+-++.++ +.+ .++||||.|+|+|.
T Consensus 1118 sg~~~a~~i~~~~~~~~~~~~f~~~~d-----~~~LGiCNGfQ~L~ 1158 (1310)
T TIGR01735 1118 AGKGWAKSILFNPRLRDQFQAFFKRPD-----TFSLGVCNGCQMLS 1158 (1310)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHhCCC-----ceEEEecHHHHHHH
Confidence 1 112233333 333 99999999999999
No 98
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.17 E-value=6.5e-06 Score=87.77 Aligned_cols=93 Identities=16% Similarity=0.280 Sum_probs=63.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHH
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI 138 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~ 138 (250)
.+|.|+|+..|+.++. .....+++.+|+.+..+....-.+. ...++++++|++|||.+... +.+.
T Consensus 1034 ~~pkv~il~~pG~N~~-------------~e~~~Af~~aG~~~~~v~~~dl~~~-~~~l~~~~~l~~~GGFS~gD-~lgs 1098 (1290)
T PRK05297 1034 ARPKVAILREQGVNSH-------------VEMAAAFDRAGFDAIDVHMSDLLAG-RVTLEDFKGLVACGGFSYGD-VLGA 1098 (1290)
T ss_pred CCCeEEEEECCCCCCH-------------HHHHHHHHHcCCCeEEEEeecCcCC-CCChhhCcEEEECCccCCcc-cchH
Confidence 5799999999998663 3456789999999877765421000 12377899999999987522 2221
Q ss_pred -------------HHHHHHHHH-HhCCCCCCceEEcccchhHHHHHH
Q 025574 139 -------------VEKVFKKIL-EKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 139 -------------~~~li~~~~-~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
..+-++.++ +.+ .++||||.|||+|...
T Consensus 1099 g~~~a~~~~~n~~~~~~~~~f~~~~d-----~~~LGiCNGfQ~L~~l 1140 (1290)
T PRK05297 1099 GEGWAKSILFNPRLRDQFEAFFARPD-----TFALGVCNGCQMMSNL 1140 (1290)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhCCC-----ceEEEEcHHHHHHHHh
Confidence 112233333 233 9999999999999986
No 99
>PRK00784 cobyric acid synthase; Provisional
Probab=98.17 E-value=6.1e-06 Score=79.99 Aligned_cols=87 Identities=14% Similarity=0.183 Sum_probs=58.2
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHH-cCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCcc--ch
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVES-AGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGL--YY 136 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~-~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~--~~ 136 (250)
+..|+|...+.- ..| .-.+.|++ +|++++.+.. .+. +..+|+|+||||...... +.
T Consensus 251 ~~~i~v~~~~~a-----------~~f---~nl~~l~~~~g~~v~~~s~---~~~----l~~~d~lilpGg~~~~~~~~~~ 309 (488)
T PRK00784 251 ALRIAVIRLPRI-----------SNF---TDFDPLRAEPGVDVRYVRP---GEP----LPDADLVILPGSKNTIADLAWL 309 (488)
T ss_pred ceEEEEEeCCCc-----------CCc---cChHHHhhcCCCeEEEECC---ccc----cccCCEEEECCccchHHHHHHH
Confidence 458888775532 112 23457777 9999888753 222 568999999999863222 11
Q ss_pred HH--HHHHHHHHHHhCCCCCCceEEcccchhHHHHHHh
Q 025574 137 AI--VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (250)
Q Consensus 137 ~~--~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~ 172 (250)
.. ..+.++.+.+++ +|+||||.|||+|+...
T Consensus 310 ~~~~l~~~i~~~~~~g-----~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 310 RESGWDEAIRAHARRG-----GPVLGICGGYQMLGRRI 342 (488)
T ss_pred HHcCHHHHHHHHHHcC-----CeEEEECHHHHHHhhhc
Confidence 21 224455555666 99999999999999976
No 100
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.08 E-value=9.2e-06 Score=77.98 Aligned_cols=91 Identities=16% Similarity=0.308 Sum_probs=60.2
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCC--CccchH
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--DGLYYA 137 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~--~~~~~~ 137 (250)
+++|||.-.+- . +|-.+.-.+.|++.|++++.+....+ +. +..+|+|+||||... ...+..
T Consensus 244 ~~~Iava~d~a----------f--nFy~~~~~~~L~~~g~~~~~~~~~~d-~~----l~~~d~l~ipGG~~~~~~~~l~~ 306 (449)
T TIGR00379 244 YVRIAVAQDQA----------F--NFYYQDNLDALTHNAAELVPFSPLED-TE----LPDVDAVYIGGGFPELFAEELSQ 306 (449)
T ss_pred CcEEEEEechh----------h--ceeHHHHHHHHHHCCCEEEEECCccC-CC----CCCCCEEEeCCcHHHHHHHHHHh
Confidence 47899987542 1 22225567889999999988864322 22 558999999999741 111111
Q ss_pred H--HHHHHHHHHHhCCCCCCceEEcccchhHHHHHHh
Q 025574 138 I--VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (250)
Q Consensus 138 ~--~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~ 172 (250)
. ..+-++.+.+.+ .||||||-|||+|+...
T Consensus 307 ~~~~~~~i~~~~~~G-----~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 307 NQALRDSIKTFIHQG-----LPIYGECGGLMYLSQSL 338 (449)
T ss_pred hhHHHHHHHHHHHcC-----CCEEEEcHHHHHHHhhh
Confidence 1 123445555666 99999999999999976
No 101
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.99 E-value=2e-05 Score=55.13 Aligned_cols=75 Identities=20% Similarity=0.217 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccc--hHHHHHHHHHHHHhCCCCCCceEEcccchhH
Q 025574 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~--~~~~~~li~~~~~~~~~g~~~PILGIClG~Q 166 (250)
.+.+.+++.+..+.+++.............++|+|++|||+...... .....+.+.+..+++ +|++|+|.|+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~g~~ 90 (92)
T cd03128 16 SPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAG-----KPVLGICLGAQ 90 (92)
T ss_pred cHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcC-----CEEEEEecccc
Confidence 45678899999888887664432111235679999999999853322 122224444444555 99999999998
Q ss_pred HH
Q 025574 167 LL 168 (250)
Q Consensus 167 lL 168 (250)
++
T Consensus 91 ~~ 92 (92)
T cd03128 91 LL 92 (92)
T ss_pred cC
Confidence 74
No 102
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.89 E-value=3.3e-05 Score=73.88 Aligned_cols=89 Identities=16% Similarity=0.238 Sum_probs=58.8
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCC-ccchHH-
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD-GLYYAI- 138 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~-~~~~~~- 138 (250)
++|||-- +...+|.+..-.+.||++ ++++.+..-.+ +. +.++|+|+||||...- ......
T Consensus 234 ~~iavA~------------D~AF~FyY~enl~~L~~~-aelv~fSPl~~-~~----lp~~D~l~lpGG~~e~~~~~L~~n 295 (433)
T PRK13896 234 PTVAVAR------------DAAFCFRYPATIERLRER-ADVVTFSPVAG-DP----LPDCDGVYLPGGYPELHADALADS 295 (433)
T ss_pred CeEEEEE------------cCccceeCHHHHHHHHhc-CcEEEEcCCCC-CC----CCCCCEEEeCCCchhhHHHHHHhC
Confidence 6888854 234556566678899999 88888754322 22 4578999999997521 111111
Q ss_pred -HHHHHHHHHHhCCCCCCceEEcccchhHHHHHHh
Q 025574 139 -VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (250)
Q Consensus 139 -~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~ 172 (250)
..+-++.+.+++ .||+|||-|+|+|+..+
T Consensus 296 ~~~~~i~~~~~~G-----~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 296 PALDELADRAADG-----LPVLGECGGLMALAESL 325 (433)
T ss_pred CcHHHHHHHHHCC-----CcEEEEehHHHHhhccc
Confidence 012334444566 99999999999999975
No 103
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=97.87 E-value=3.7e-05 Score=64.23 Aligned_cols=91 Identities=18% Similarity=0.305 Sum_probs=52.9
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHc------CCeEEEeecCCChhhHHHhcccCCEEEECCCCCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA------GARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD 132 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~------G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~ 132 (250)
...||||++..+. ||. .++.++++ +....+.+.. ++++ ++++||+|+|||.+..
T Consensus 10 tn~VIGVLALQGA-------------FiE--H~N~~~~c~~en~y~Ik~~~~tVK-T~~D----~aq~DaLIIPGGEST~ 69 (226)
T KOG3210|consen 10 TNVVIGVLALQGA-------------FIE--HVNHVEKCIVENRYEIKLSVMTVK-TKND----LAQCDALIIPGGESTA 69 (226)
T ss_pred cceEEeeeehhhH-------------HHH--HHHHHHHhhccCcceEEEEEEeec-CHHH----HhhCCEEEecCCchhH
Confidence 3468999987642 444 34445532 2222233332 3333 7789999999998731
Q ss_pred ccchHH----HHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcC
Q 025574 133 GLYYAI----VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISK 174 (250)
Q Consensus 133 ~~~~~~----~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG 174 (250)
-..... ...+...+-+-. +|+||.|-||-+|..-+.|
T Consensus 70 mslia~~tgL~d~L~~fVhn~~-----k~~WGTCAGmI~LS~ql~n 110 (226)
T KOG3210|consen 70 MSLIAERTGLYDDLYAFVHNPS-----KVTWGTCAGMIYLSQQLSN 110 (226)
T ss_pred HHHHHhhhhhHHHHHHHhcCCC-----ccceeechhhhhhhhhhcC
Confidence 111111 123333332233 8999999999999987544
No 104
>PHA03366 FGAM-synthase; Provisional
Probab=97.86 E-value=5.1e-05 Score=81.07 Aligned_cols=93 Identities=16% Similarity=0.242 Sum_probs=64.2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC-ChhhHHHhcccCCEEEECCCCCCCc---
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDG--- 133 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dgvIlpGG~~~~~--- 133 (250)
..||.|.|+..|+.++. .....+++++|+.+..+.... .... .++.++||+++||.+...
T Consensus 1026 ~~~prVaIl~~pG~N~~-------------~e~~~Af~~aGf~~~~v~~~dL~~~~---~l~~f~glv~~GGFS~gD~l~ 1089 (1304)
T PHA03366 1026 DKRHRVAVLLLPGCPGP-------------HALLAAFTNAGFDPYPVSIEELKDGT---FLDEFSGLVIGGSSGAEDSYT 1089 (1304)
T ss_pred CCCCeEEEEECCCCCCH-------------HHHHHHHHHcCCceEEEEeecCCCCC---ccccceEEEEcCCCCCccccc
Confidence 46899999999987653 345678999999988877542 1111 167889999999987521
Q ss_pred ---cchH------HHHHHHHHHHHh-CCCCCCceEEcccc-hhHHHHHH
Q 025574 134 ---LYYA------IVEKVFKKILEK-NDAGDHFPLYAHCL-GFELLTMI 171 (250)
Q Consensus 134 ---~~~~------~~~~li~~~~~~-~~~g~~~PILGICl-G~QlL~~~ 171 (250)
.|.. ...+-++.++++ + .++||||. |+|+|...
T Consensus 1090 ~~~~~a~~il~n~~~~~~~~~f~~r~d-----t~~LGiCN~G~Q~L~~l 1133 (1304)
T PHA03366 1090 GARAAVAALLSNPAVRDALLRFLNRPD-----TFSLGCGELGCQILFAL 1133 (1304)
T ss_pred HHHHHHHHhhhchHHHHHHHHHHhCCC-----CeEEEeCcHHHHHHHHc
Confidence 1111 112334444433 4 99999998 99999985
No 105
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=97.85 E-value=6.8e-05 Score=79.68 Aligned_cols=94 Identities=15% Similarity=0.147 Sum_probs=63.5
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccc--
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLY-- 135 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~-- 135 (250)
..||.|.|+..|+.++. .....+++++|+.+..+....-.+. . .++.++||+++||.+.....
T Consensus 927 ~~~p~VaIl~~pG~N~~-------------~e~~~Af~~aGf~~~~v~~~dl~~~-~-~l~~f~glv~~Ggfsy~D~lgs 991 (1202)
T TIGR01739 927 DPRHQVAVLLLPGQSVP-------------HGLLAALTNAGFDPRIVSITELKKT-D-FLDTFSGLIIGGASGTLDSEVG 991 (1202)
T ss_pred CCCCeEEEEeCCCCCCH-------------HHHHHHHHHcCCceEEEEeccCCCC-C-chhheEEEEEcCcCCCCccchH
Confidence 45899999999987653 3456689999999888875431110 1 25678999999998752211
Q ss_pred ----hH------HHHHHHHHHHHh-CCCCCCceEEcccc-hhHHHHHH
Q 025574 136 ----YA------IVEKVFKKILEK-NDAGDHFPLYAHCL-GFELLTMI 171 (250)
Q Consensus 136 ----~~------~~~~li~~~~~~-~~~g~~~PILGICl-G~QlL~~~ 171 (250)
.. ...+-++.++++ + .++||||. |+|+|...
T Consensus 992 g~~~a~~il~n~~~~~~~~~f~~r~d-----tf~LGiCN~G~Q~L~~l 1034 (1202)
T TIGR01739 992 ARALAAALLRNQAFLRDLLTFLNRPD-----TFSLGFGELGCQLLLAL 1034 (1202)
T ss_pred HHHHHHHhhcchHHHHHHHHHHhCCC-----ceEEEeCcHHHHHHHHc
Confidence 11 112234444433 4 99999998 99999985
No 106
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.55 E-value=6.1e-05 Score=62.25 Aligned_cols=53 Identities=21% Similarity=0.364 Sum_probs=37.2
Q ss_pred hcccCCEEEECCCCCC--CccchHH--HHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhc
Q 025574 116 KLELVNGVLYTGGWAK--DGLYYAI--VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIIS 173 (250)
Q Consensus 116 ~l~~~dgvIlpGG~~~--~~~~~~~--~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~G 173 (250)
.+..+|+|+||||-.. +..+.+. ..+-++.+.+.+ .||+|||=|||+|...+-
T Consensus 4 ~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G-----~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 4 LPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAG-----GPIYAECGGYQYLGESII 60 (158)
T ss_pred CCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcC-----CcEEEEchHHHHHHHHHh
Confidence 3678999999999651 1111111 224456666777 999999999999999763
No 107
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=97.52 E-value=0.00031 Score=63.95 Aligned_cols=84 Identities=13% Similarity=0.162 Sum_probs=48.4
Q ss_pred ccCCEEEECCCCCC-----CccchHHHHHHHHHHHHhCCCCCCceEEcccchhHH-HHHHhcCcccccccccCCCceeee
Q 025574 118 ELVNGVLYTGGWAK-----DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL-LTMIISKDKNILESFNAADQASTL 191 (250)
Q Consensus 118 ~~~dgvIlpGG~~~-----~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~Ql-L~~~~GG~~~~l~~~~~~~~~~pi 191 (250)
+.+||+|++|-+.- +-+|..+..++++++.+.. ++.|.||.|.|. |...+|-....+.+ .-.+..+.
T Consensus 97 ~~~DglIITGAPvE~l~Fe~V~YW~El~~i~dwa~~~v-----~stl~iCWgAqAaLy~~yGI~K~~l~~--KlfGVf~~ 169 (298)
T PF04204_consen 97 RKFDGLIITGAPVEQLPFEEVDYWDELTEIFDWAKTHV-----TSTLFICWGAQAALYHFYGIPKYPLPE--KLFGVFEH 169 (298)
T ss_dssp S-EEEEEE---TTTTS-GGGSTTHHHHHHHHHHHHHHE-----EEEEEETHHHHHHHHHHH----EEEEE--EEEEEEEE
T ss_pred CCCCEEEEeCCCcCCCCcccCCcHHHHHHHHHHHHHcC-----CcchhhhHHHHHHHHHHcCCCcccCCC--cceeceee
Confidence 46899999999862 2356667789999999998 999999999999 55566654222211 11122223
Q ss_pred eeeecCCCCCcccccCChhh
Q 025574 192 QFMENTSIEGTVFQRFPPKL 211 (250)
Q Consensus 192 ~~~~~~~~~s~Lf~~lp~~~ 211 (250)
... ...++|++++++.+
T Consensus 170 ~~~---~~~~pLl~Gfdd~f 186 (298)
T PF04204_consen 170 RVL---DPDHPLLRGFDDTF 186 (298)
T ss_dssp EES----SS-GGGTT--SEE
T ss_pred ecc---CCCChhhcCCCccc
Confidence 221 12688999997654
No 108
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=97.48 E-value=0.00079 Score=59.41 Aligned_cols=98 Identities=13% Similarity=0.117 Sum_probs=66.9
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCC--ccch
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD--GLYY 136 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~--~~~~ 136 (250)
.+|.|.++...... .....|+. ++.+.+++.|+++..+... ++..+.+..+|+|+++||.... ..+.
T Consensus 30 ~~~~v~fIPtAs~~-------~~~~~y~~-~~~~af~~lG~~v~~l~~~---~d~~~~l~~ad~I~v~GGnt~~l~~~l~ 98 (233)
T PRK05282 30 GRRKAVFIPYAGVT-------QSWDDYTA-KVAEALAPLGIEVTGIHRV---ADPVAAIENAEAIFVGGGNTFQLLKQLY 98 (233)
T ss_pred CCCeEEEECCCCCC-------CCHHHHHH-HHHHHHHHCCCEEEEeccc---hhhHHHHhcCCEEEECCccHHHHHHHHH
Confidence 46888887655421 23566764 5888999999998877643 2233457899999999997621 1111
Q ss_pred H-HHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHh
Q 025574 137 A-IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (250)
Q Consensus 137 ~-~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~ 172 (250)
+ ...+.++.+++++ +|++|+|-|+-+++...
T Consensus 99 ~~gl~~~l~~~~~~G-----~~~~G~SAGAii~~~~i 130 (233)
T PRK05282 99 ERGLLAPIREAVKNG-----TPYIGWSAGANVAGPTI 130 (233)
T ss_pred HCCcHHHHHHHHHCC-----CEEEEECHHHHhhhccc
Confidence 1 1235667677777 99999999998877654
No 109
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.47 E-value=0.0001 Score=58.04 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=30.9
Q ss_pred ccCCEEEECCCCCCCccchHHH---HHHHHHHHHhCCCCCCceEEcccchhHHH
Q 025574 118 ELVNGVLYTGGWAKDGLYYAIV---EKVFKKILEKNDAGDHFPLYAHCLGFELL 168 (250)
Q Consensus 118 ~~~dgvIlpGG~~~~~~~~~~~---~~li~~~~~~~~~g~~~PILGIClG~QlL 168 (250)
+++|.||||||.. .+.+.... .+.++..++++ +|+||||+|.=+-
T Consensus 43 ~~ad~lVlPGGa~-~~~~~~L~~~g~~~i~~~v~~g-----~p~LGIClGAy~a 90 (114)
T cd03144 43 SKTALLVVPGGAD-LPYCRALNGKGNRRIRNFVRNG-----GNYLGICAGAYLA 90 (114)
T ss_pred hCCCEEEECCCCh-HHHHHHHHhhCcHHHHHHHHCC-----CcEEEEecCccce
Confidence 3789999999543 33333221 25555555677 9999999998666
No 110
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.43 E-value=0.00022 Score=69.10 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=35.3
Q ss_pred cccCCEEEECCCCCCCcc--chHH--HHHHHHHHHHhCCCCCCceEEcccchhHHHHHHh
Q 025574 117 LELVNGVLYTGGWAKDGL--YYAI--VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (250)
Q Consensus 117 l~~~dgvIlpGG~~~~~~--~~~~--~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~ 172 (250)
+..+|+|+||||...... +... ..+-++.+.+.+ .||||||-|||+|...+
T Consensus 282 l~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G-----~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 282 LTGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEG-----GIVIGICGGYQMLGKEL 336 (475)
T ss_pred cccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcC-----CcEEEEcHHHHHhhhhh
Confidence 557999999999863111 1111 123445555666 99999999999999964
No 111
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=97.40 E-value=0.00059 Score=59.43 Aligned_cols=52 Identities=17% Similarity=0.360 Sum_probs=38.4
Q ss_pred cccCCEEEECCCCCCCccc------------hHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhc
Q 025574 117 LELVNGVLYTGGWAKDGLY------------YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIIS 173 (250)
Q Consensus 117 l~~~dgvIlpGG~~~~~~~------------~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~G 173 (250)
++.+|+|++|||......+ .....++++.+.+++ +||.+||.|-++|+.+.+
T Consensus 80 ~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~g-----K~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 80 AADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAG-----KPIGAICIAPALAAKILG 143 (213)
T ss_pred HhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCC-----CeEEEECHHHHHHHHHhc
Confidence 3468999999996421111 123457788888888 999999999999998764
No 112
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.38 E-value=0.0011 Score=55.35 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=36.1
Q ss_pred cCCEEEECCCCCCCcc-chHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 119 LVNGVLYTGGWAKDGL-YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 119 ~~dgvIlpGG~~~~~~-~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
.+|+|++|||+..... .......+++.+.+++ +||.|||.|.++|+.+
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~-----k~i~~ic~G~~~La~a 124 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEAN-----KPVAAICHGPQILAAA 124 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcC-----CEEEEECcHHHHHHHc
Confidence 5799999999752111 1123447788887777 9999999999999985
No 113
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=97.30 E-value=0.0012 Score=57.71 Aligned_cols=51 Identities=18% Similarity=0.335 Sum_probs=38.3
Q ss_pred cccCCEEEECCCCCC-C--------ccc---hHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHh
Q 025574 117 LELVNGVLYTGGWAK-D--------GLY---YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (250)
Q Consensus 117 l~~~dgvIlpGG~~~-~--------~~~---~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~ 172 (250)
.+++|+|++|||... . +.+ .....++++.+.+++ +||.+||.|-++|..+.
T Consensus 83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~g-----K~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAG-----KPIGFICIAPAMLPKIL 145 (217)
T ss_pred hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCC-----CEEEEECHHHHHHHHHh
Confidence 357899999999541 0 111 122457888888888 99999999999999876
No 114
>PRK04155 chaperone protein HchA; Provisional
Probab=97.27 E-value=0.0036 Score=56.94 Aligned_cols=50 Identities=16% Similarity=0.057 Sum_probs=36.8
Q ss_pred cccCCEEEECCCCCCCccc--hHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 117 LELVNGVLYTGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 117 l~~~dgvIlpGG~~~~~~~--~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
.+.+|+|++|||......+ .....++++++.+.+ +||..||.|-++|..+
T Consensus 145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~-----K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDND-----RFIITLCHGPAALLAA 196 (287)
T ss_pred cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcC-----CEEEEEChHHHHHHHc
Confidence 3578999999996521111 112458889998888 9999999999877764
No 115
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=97.25 E-value=0.0018 Score=53.04 Aligned_cols=78 Identities=22% Similarity=0.268 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCeEEEeecCC------------ChhhHHH-hcccCCEEEECCCCCCCcc-chHHHHHHHHHHHHhCCCCC
Q 025574 89 SYVKFVESAGARVIPLIYNE------------PEDVLFE-KLELVNGVLYTGGWAKDGL-YYAIVEKVFKKILEKNDAGD 154 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~------------~~~~l~~-~l~~~dgvIlpGG~~~~~~-~~~~~~~li~~~~~~~~~g~ 154 (250)
...+.++++|.++..+.... ....+.+ ..+.+|+|++|||...... .......+++++.+++
T Consensus 17 ~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~---- 92 (166)
T TIGR01382 17 YPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNKAVRLVREFVEKG---- 92 (166)
T ss_pred HHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCHHHhccCHHHHHHHHHHHHcC----
Confidence 34677888888876664321 0011111 1225899999999652110 0112347777777777
Q ss_pred CceEEcccchhHHHHHH
Q 025574 155 HFPLYAHCLGFELLTMI 171 (250)
Q Consensus 155 ~~PILGIClG~QlL~~~ 171 (250)
+|+.|||.|.++|+.+
T Consensus 93 -~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 93 -KPVAAICHGPQLLISA 108 (166)
T ss_pred -CEEEEEChHHHHHHhc
Confidence 9999999999999975
No 116
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=97.08 E-value=0.0029 Score=57.55 Aligned_cols=105 Identities=11% Similarity=0.129 Sum_probs=66.2
Q ss_pred ccCCEEEECCCCCC-----CccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcC-cccccccccCCCceeee
Q 025574 118 ELVNGVLYTGGWAK-----DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISK-DKNILESFNAADQASTL 191 (250)
Q Consensus 118 ~~~dgvIlpGG~~~-----~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG-~~~~l~~~~~~~~~~pi 191 (250)
+.+||+|++|-|.- +-.|..+..++++++.+.. +..|.||.|.|.--..+-| ....+.+ .-.+..+.
T Consensus 98 ~~fDGlIITGAPvE~l~FeeV~YW~El~~I~dwsk~~v-----~Stl~iCWaAqAaLy~~yGI~K~~l~~--KlfGVf~h 170 (300)
T TIGR01001 98 RKFDGLIITGAPVELVPFEDVAYWEELTEIMEWSKHNV-----TSTMFICWAAQAGLKYFYGIPKYTLPE--KLSGVYKH 170 (300)
T ss_pred CCCCEEEEcCCCcCCCCcccCCcHHHHHHHHHHHHHcC-----cchHHHHHHHHHHHHHHcCCCccccCC--ceEEeecC
Confidence 57899999999862 2356677789999998888 9999999999995555444 2111211 11122222
Q ss_pred eeeecCCCCCcccccCChhhhhhcCCccceeeeecc--cccc--------ceEEEEeecCCCe
Q 025574 192 QFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHV--RPCT--------INLLSTSVARFNC 244 (250)
Q Consensus 192 ~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~--~V~~--------f~vlA~s~D~~g~ 244 (250)
... . .++|++++++.|. -=||- .+.. ++|+|.+ ++.|.
T Consensus 171 ~~~---~-~~pL~rGfdd~f~----------~PhSR~t~i~~~~i~~~~~L~vla~s-~e~G~ 218 (300)
T TIGR01001 171 DIA---P-DSLLLRGFDDFFL----------APHSRYADFDAEDIDKVTDLEILAES-DEAGV 218 (300)
T ss_pred ccC---C-CCccccCCCCccc----------cCCCCCCCCCHHHHhcCCCCeEEecC-CCcce
Confidence 211 2 5789999886543 22433 3432 8888888 33554
No 117
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=97.04 E-value=0.0049 Score=50.47 Aligned_cols=77 Identities=18% Similarity=0.146 Sum_probs=50.3
Q ss_pred HHHHHHHcCCeEEEeecC-CC-----hh--------hHHHh-cccCCEEEECCCCCCCcc-chHHHHHHHHHHHHhCCCC
Q 025574 90 YVKFVESAGARVIPLIYN-EP-----ED--------VLFEK-LELVNGVLYTGGWAKDGL-YYAIVEKVFKKILEKNDAG 153 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~~~-~~-----~~--------~l~~~-l~~~dgvIlpGG~~~~~~-~~~~~~~li~~~~~~~~~g 153 (250)
..+.|+++|+++..+..+ .. .. .+.+. ...+|.|++|||+..... .......+++++.+++
T Consensus 18 ~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~--- 94 (165)
T cd03134 18 PLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAG--- 94 (165)
T ss_pred HHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCChhhhccCHHHHHHHHHHHHcC---
Confidence 456788889888776544 10 00 11221 135799999999752211 1123346777777777
Q ss_pred CCceEEcccchhHHHHHH
Q 025574 154 DHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 154 ~~~PILGIClG~QlL~~~ 171 (250)
+||.|||-|.++|+.+
T Consensus 95 --~~i~~ic~G~~~La~a 110 (165)
T cd03134 95 --KPVAAICHGPWVLISA 110 (165)
T ss_pred --CeEEEEchHHHHHHhc
Confidence 9999999999999874
No 118
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=97.04 E-value=0.0017 Score=57.13 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=37.7
Q ss_pred cccCCEEEECCCCCCCccch--HHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 117 LELVNGVLYTGGWAKDGLYY--AIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 117 l~~~dgvIlpGG~~~~~~~~--~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
.+++|+|++|||..-...+. ....++++.+.+.+ +||-.||.|-++|..+
T Consensus 92 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~g-----K~iaAIChgp~~L~~a 143 (231)
T cd03147 92 PDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANG-----GVVAAVCHGPAILANL 143 (231)
T ss_pred HhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcC-----CEEEEEChHHHHHHhh
Confidence 35789999999964211121 23457888888888 9999999999999886
No 119
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=96.99 E-value=0.0041 Score=53.49 Aligned_cols=95 Identities=13% Similarity=0.254 Sum_probs=63.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC--ChhhHHHhcccCCEEEECCCCCCCccch
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--PEDVLFEKLELVNGVLYTGGWAKDGLYY 136 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~--~~~~l~~~l~~~dgvIlpGG~~~~~~~~ 136 (250)
..|.|.++..... ....|. ..|.+++++.|++++.+.... +.++..+.+..+|+|+++||... .+.
T Consensus 28 ~~~~i~~iptA~~---------~~~~~~-~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~--~~~ 95 (210)
T cd03129 28 AGARVLFIPTASG---------DRDEYG-EEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQL--RLL 95 (210)
T ss_pred CCCeEEEEeCCCC---------ChHHHH-HHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHH--HHH
Confidence 4678888765532 123343 458889999999888776532 23445567889999999998652 122
Q ss_pred HH-----H-HHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 137 AI-----V-EKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 137 ~~-----~-~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
.. . +.+.+.+ .++ .|+.|+|-|..++...
T Consensus 96 ~~l~~t~~~~~i~~~~-~~G-----~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 96 SVLRETPLLDAILKRV-ARG-----VVIGGTSAGAAVMGET 130 (210)
T ss_pred HHHHhCChHHHHHHHH-HcC-----CeEEEcCHHHHHhhhc
Confidence 21 1 2333333 356 9999999999999985
No 120
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=96.82 E-value=0.0041 Score=54.74 Aligned_cols=49 Identities=12% Similarity=0.049 Sum_probs=36.2
Q ss_pred ccCCEEEECCCCCCCccc--hHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 118 ELVNGVLYTGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 118 ~~~dgvIlpGG~~~~~~~--~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
+++|+|++|||..-...+ .....++++.+.+++ +||-.||.|-+.|..+
T Consensus 95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~g-----K~VaAICHGp~~L~~a 145 (232)
T cd03148 95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKND-----RFVITLCHGPAAFLAA 145 (232)
T ss_pred hhceEEEECCCCCChhhcccCHHHHHHHHHHHHcC-----CEEEEECcHHHHHHhc
Confidence 578999999995511111 122347888888888 9999999999977765
No 121
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=96.80 E-value=0.0094 Score=47.72 Aligned_cols=95 Identities=19% Similarity=0.141 Sum_probs=59.2
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC-----------hh-hHHHh-cccCCEEEECC
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-----------ED-VLFEK-LELVNGVLYTG 127 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~-----------~~-~l~~~-l~~~dgvIlpG 127 (250)
..|+|+..++-. ... .....+.++.+|.++..+..+.. .+ .+.+. ...+|.|++||
T Consensus 2 ~~v~ill~~g~~---------~~e--~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpG 70 (142)
T cd03132 2 RKVGILVADGVD---------AAE--LSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPG 70 (142)
T ss_pred CEEEEEEcCCcC---------HHH--HHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECC
Confidence 358888766431 111 23466788899998887754321 00 11111 12479999999
Q ss_pred CCCCCcc--chHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 128 GWAKDGL--YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 128 G~~~~~~--~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
|...... ......++++.+.+++ +||.+||-|-.+|+.+
T Consensus 71 g~~~~~~~~~~~~l~~~l~~~~~~~-----~~I~aic~G~~~La~a 111 (142)
T cd03132 71 GAEAAFALAPSGRALHFVTEAFKHG-----KPIGAVGEGSDLLEAA 111 (142)
T ss_pred CccCHHHHccChHHHHHHHHHHhcC-----CeEEEcCchHHHHHHc
Confidence 9763211 1122346777777777 9999999999999974
No 122
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=96.70 E-value=0.01 Score=49.74 Aligned_cols=95 Identities=18% Similarity=0.194 Sum_probs=58.8
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC--------------hhhHHHhc--ccCCEEE
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--------------EDVLFEKL--ELVNGVL 124 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~--------------~~~l~~~l--~~~dgvI 124 (250)
..|+|+..++.. ...++. -.+.++++|..+..+..... .....+.. +.+|.|+
T Consensus 3 ~~i~i~~~~g~e---------~~E~~~--p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ 71 (188)
T COG0693 3 KKIAILLADGFE---------DLELIV--PYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALV 71 (188)
T ss_pred ceeEEEecCcce---------ehhHhH--HHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEE
Confidence 456777766532 223332 35678889987665543321 00011112 4789999
Q ss_pred ECCC-CCCCccch-HHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 125 YTGG-WAKDGLYY-AIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 125 lpGG-~~~~~~~~-~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
+||| ....-.+. .....+++.+.+.+ +||..||.|-++|..+
T Consensus 72 ipGG~~~~~~~~~~~~~~~~v~~~~~~~-----k~vaaIC~g~~~L~~a 115 (188)
T COG0693 72 IPGGDHGPEYLRPDPDLLAFVRDFYANG-----KPVAAICHGPAVLAAA 115 (188)
T ss_pred ECCCccchhhccCcHHHHHHHHHHHHcC-----CEEEEEChhHHHHhcc
Confidence 9999 54211111 23457788888888 9999999999999875
No 123
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.39 E-value=0.014 Score=48.75 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=36.0
Q ss_pred cccCCEEEECCCCCCCc-cchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 117 LELVNGVLYTGGWAKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 117 l~~~dgvIlpGG~~~~~-~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
...+|.|++|||..... .......++++...+++ ++|.+||-|-++|+.+
T Consensus 62 ~~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~-----~~i~aic~g~~~La~a 112 (187)
T cd03137 62 LAAADTVIVPGGPDVDGRPPPPALLAALRRAAARG-----ARVASVCTGAFVLAEA 112 (187)
T ss_pred cCCCCEEEECCCcccccccCCHHHHHHHHHHHhcC-----CEEEEECHHHHHHHHc
Confidence 45789999999966321 11122346666666666 9999999999999986
No 124
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=96.32 E-value=0.039 Score=46.61 Aligned_cols=96 Identities=10% Similarity=0.161 Sum_probs=56.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC---------------ChhhHHHh-cccCCE
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE---------------PEDVLFEK-LELVNG 122 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~---------------~~~~l~~~-l~~~dg 122 (250)
++|.|.|+..++-.. ..++ ..++.++++|..+....... +...+.+. .+.+|.
T Consensus 1 ~~~~~~il~~~g~~~---------~e~~--~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~ 69 (196)
T PRK11574 1 MSASALVCLAPGSEE---------TEAV--TTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDV 69 (196)
T ss_pred CCceEEEEeCCCcch---------hhHh--HHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCE
Confidence 467788888775321 2222 34567888887665543211 01122221 246899
Q ss_pred EEECCCCCCCccc--hHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHH
Q 025574 123 VLYTGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (250)
Q Consensus 123 vIlpGG~~~~~~~--~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~ 170 (250)
|++|||....... ......+++.+.+++ ++|.+||-|-.+|..
T Consensus 70 l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g-----~~v~aic~G~~~ll~ 114 (196)
T PRK11574 70 IVLPGGIKGAECFRDSPLLVETVRQFHRSG-----RIVAAICAAPATVLV 114 (196)
T ss_pred EEECCCCchhhhhhhCHHHHHHHHHHHHCC-----CEEEEECHhHHHHHH
Confidence 9999986311111 112346677777777 999999999987543
No 125
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=96.32 E-value=0.0025 Score=51.62 Aligned_cols=50 Identities=22% Similarity=0.328 Sum_probs=35.9
Q ss_pred cccCCEEEECCCCC-CCccc--hHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 117 LELVNGVLYTGGWA-KDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 117 l~~~dgvIlpGG~~-~~~~~--~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
.+.+|+|++|||.. ...-. ......+++++.+++ +||.+||.|-.+|..+
T Consensus 35 ~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~-----k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 35 PSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAG-----KPIAAICHGPAVLAAA 87 (147)
T ss_dssp GGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT------EEEEETTCHHHHHHT
T ss_pred hhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcC-----CeEEecCCCcchhhcc
Confidence 45699999999976 21111 123458888888888 9999999999888875
No 126
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.20 E-value=0.012 Score=48.76 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=36.4
Q ss_pred ccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 118 ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 118 ~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
+++|.|++|||......-......++++..+++ ++|.+||-|.++|+.+
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~-----~~i~aic~G~~~La~a 107 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEAPDLAGLVRQALKQG-----KPVAAICGATLALARA 107 (170)
T ss_pred hHccEEEEcCCcccccCCcHHHHHHHHHHHHcC-----CEEEEEChHHHHHHHC
Confidence 468999999997532211123346777777777 9999999999999985
No 127
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=96.10 E-value=0.0055 Score=53.44 Aligned_cols=73 Identities=18% Similarity=0.194 Sum_probs=47.9
Q ss_pred HHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccc----hHHHHHHHHHHHHhCCCCCCceEEcccchhHH
Q 025574 92 KFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLY----YAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (250)
Q Consensus 92 ~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~----~~~~~~li~~~~~~~~~g~~~PILGIClG~Ql 167 (250)
+..+..|+.+.+++.+..... + .+.+|-+++-||.+..-.. ....+.-++.+++.+ +|+|.||=|.|+
T Consensus 28 ~ra~~rgi~v~i~~vsl~d~~-~--~~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g-----~p~laiCgg~Ql 99 (250)
T COG3442 28 QRAEKRGIKVEIVEVSLTDTF-P--DDSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENG-----KPVLAICGGYQL 99 (250)
T ss_pred HHHHhcCCceEEEEeecCCCC-C--cccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcC-----CcEEEEccchhh
Confidence 467778988777766543221 1 2478887777776631100 111235567777777 999999999999
Q ss_pred HHHHh
Q 025574 168 LTMII 172 (250)
Q Consensus 168 L~~~~ 172 (250)
|...+
T Consensus 100 LG~yY 104 (250)
T COG3442 100 LGQYY 104 (250)
T ss_pred cccee
Confidence 99864
No 128
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=96.04 E-value=0.03 Score=45.36 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCeEEEeecCCC-------------hhhHHH-hcccCCEEEECCCC-CCCcc-chHHHHHHHHHHHHhCCC
Q 025574 89 SYVKFVESAGARVIPLIYNEP-------------EDVLFE-KLELVNGVLYTGGW-AKDGL-YYAIVEKVFKKILEKNDA 152 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~-------------~~~l~~-~l~~~dgvIlpGG~-~~~~~-~~~~~~~li~~~~~~~~~ 152 (250)
...+.++.+|.++..+..+.. ...+.+ ...++|.|++|||. ..... ......++++++.+++
T Consensus 16 ~~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~-- 93 (163)
T cd03135 16 TPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKG-- 93 (163)
T ss_pred HHHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcC--
Confidence 356678888877766543210 011222 12578999999997 31110 1122346677777777
Q ss_pred CCCceEEcccchhHHHHHH
Q 025574 153 GDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 153 g~~~PILGIClG~QlL~~~ 171 (250)
++|.+||-|..+|+.+
T Consensus 94 ---~~i~~ic~g~~~La~a 109 (163)
T cd03135 94 ---KLIAAICAAPAVLAKA 109 (163)
T ss_pred ---CEEEEEchhHHHHHHc
Confidence 9999999999999986
No 129
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=95.94 E-value=0.023 Score=47.16 Aligned_cols=50 Identities=14% Similarity=0.152 Sum_probs=34.0
Q ss_pred cccCCEEEECCCCCCCc-cchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 117 LELVNGVLYTGGWAKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 117 l~~~dgvIlpGG~~~~~-~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
...+|.|++|||..... ........+++++.+++ ++|.+||-|..+|+.+
T Consensus 60 ~~~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~-----k~i~aic~g~~~La~a 110 (183)
T cd03139 60 PPDLDVLLVPGGGGTRALVNDPALLDFIRRQAARA-----KYVTSVCTGALLLAAA 110 (183)
T ss_pred CCCCCEEEECCCcchhhhccCHHHHHHHHHhcccC-----CEEEEEchHHHHHHhc
Confidence 34789999999965211 11122335566555555 9999999999888875
No 130
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=95.78 E-value=0.017 Score=55.88 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=41.1
Q ss_pred CCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCc--cchHH---HHHHHHHHHHhCCCCCCceEEcccchhHHHHHHh
Q 025574 98 GARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG--LYYAI---VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (250)
Q Consensus 98 G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~--~~~~~---~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~ 172 (250)
+.++..++...+ +..+|.|||||--..-. .+.+. .+++.+++. ++ .||+|||=|||+|....
T Consensus 276 ~v~v~~v~~~~~-------l~~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~-~~-----~~viGICGG~QmLG~~i 342 (486)
T COG1492 276 DVRVRFVKPGSD-------LRDADLVILPGSKNTIADLKILREGGMDEKILEYAR-KG-----GDVIGICGGYQMLGRRL 342 (486)
T ss_pred CeEEEEeccCCC-------CCCCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHh-CC-----CCEEEEcchHHhhhhhh
Confidence 677777764332 66799999999876311 12221 135555553 34 89999999999999863
No 131
>PRK11249 katE hydroperoxidase II; Provisional
Probab=95.54 E-value=0.064 Score=54.69 Aligned_cols=98 Identities=14% Similarity=0.065 Sum_probs=61.8
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC------hhhH--HHhc-----ccCCEEE
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP------EDVL--FEKL-----ELVNGVL 124 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~------~~~l--~~~l-----~~~dgvI 124 (250)
.....|||+...+-. ... ...+.+.|+++|+.+.++..... ...+ +..+ ..+|+|+
T Consensus 595 ~~gRKIaILVaDG~d---------~~e--v~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVv 663 (752)
T PRK11249 595 IKGRKVAILLNDGVD---------AAD--LLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVI 663 (752)
T ss_pred ccccEEEEEecCCCC---------HHH--HHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEE
Confidence 345679998866431 112 23467889999998887753210 0000 1112 1489999
Q ss_pred ECCCCCCCccc--hHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 125 YTGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 125 lpGG~~~~~~~--~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
+|||....... ......+++.+.++. ++|.+||-|.++|..+
T Consensus 664 VPGG~~~~~~L~~d~~al~fL~eaykHg-----K~IAAiCaG~~LLaaA 707 (752)
T PRK11249 664 VPGGKANIADLADNGDARYYLLEAYKHL-----KPIALAGDARKLKAAL 707 (752)
T ss_pred ECCCchhHHHHhhCHHHHHHHHHHHHcC-----CEEEEeCccHHHHHhc
Confidence 99996421111 112447788888877 9999999999999974
No 132
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=95.48 E-value=0.043 Score=44.86 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=50.1
Q ss_pred HHHHHHHHcCCeEEEeecCC-ChhhHHHhcccCCEEEECCCCCCCccchHH-----HHHHHHHHHHhCCCCCCceEEccc
Q 025574 89 SYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAI-----VEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~-----~~~li~~~~~~~~~g~~~PILGIC 162 (250)
.+.++++++|+++..+.... +.++..+.++.+|+|++.||... .+... ....++.+++++ .|+.|+-
T Consensus 4 ~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~--~l~~~l~~t~l~~~i~~~~~~G-----~vi~G~S 76 (154)
T PF03575_consen 4 KFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDTF--RLLRQLKETGLDEAIREAYRKG-----GVIIGTS 76 (154)
T ss_dssp HHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-HH--HHHHHHHHTTHHHHHHHHHHTT-----SEEEEET
T ss_pred HHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCHH--HHHHHHHhCCHHHHHHHHHHCC-----CEEEEEC
Confidence 47889999999988887654 34456667889999999999651 22222 246777777777 9999999
Q ss_pred chhHH
Q 025574 163 LGFEL 167 (250)
Q Consensus 163 lG~Ql 167 (250)
-|.-+
T Consensus 77 AGA~i 81 (154)
T PF03575_consen 77 AGAMI 81 (154)
T ss_dssp HHHHC
T ss_pred hHHhh
Confidence 99844
No 133
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=95.34 E-value=0.072 Score=47.59 Aligned_cols=86 Identities=10% Similarity=0.130 Sum_probs=54.4
Q ss_pred ccCCEEEECCCCC----C-CccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcccccccccCCCceeeee
Q 025574 118 ELVNGVLYTGGWA----K-DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQ 192 (250)
Q Consensus 118 ~~~dgvIlpGG~~----~-~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~ 192 (250)
+++||+|++|.|. + +-.|..+..+++++....- .-.|=||.|.|.--.++-|-.. ......-.+..+.+
T Consensus 98 ~~FDG~IiTGAPve~l~feeV~YW~el~~I~eWskt~V-----~STl~ICWgaqAaly~~yGv~K-~~l~~Kl~GVy~h~ 171 (307)
T COG1897 98 QKFDGLIITGAPVELLPFEEVAYWEELKQIFEWSKTHV-----TSTLHICWGAQAALYYFYGVPK-YTLPEKLSGVYKHD 171 (307)
T ss_pred cccCceEEeCCcccccCchhhhhHHHHHHHHHHHhhcc-----hhhhhhHHHHHHHHHHHcCCCc-cccchhhhceeecc
Confidence 4789999999986 1 2356666778999987666 7789999999998877656311 11001111222222
Q ss_pred eeecCCCCCcccccCChhhh
Q 025574 193 FMENTSIEGTVFQRFPPKLI 212 (250)
Q Consensus 193 ~~~~~~~~s~Lf~~lp~~~~ 212 (250)
.. .+.+.|++|+.+.+.
T Consensus 172 ~l---~p~~~l~rGfdd~f~ 188 (307)
T COG1897 172 IL---SPHSLLTRGFDDSFL 188 (307)
T ss_pred cc---CccchhhccCCcccc
Confidence 11 225778988876653
No 134
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=95.29 E-value=0.02 Score=49.78 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=36.5
Q ss_pred ccCCEEEECCCCCCCccc--hHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 118 ELVNGVLYTGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 118 ~~~dgvIlpGG~~~~~~~--~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
+.+|+|++|||....... .....++++.+.+++ ++|.+||-|-.+|+.+
T Consensus 89 ~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~-----k~iaaIC~g~~~La~a 139 (221)
T cd03141 89 SDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENG-----KVVAAVCHGPAALLNV 139 (221)
T ss_pred hHceEEEECCCcccccccccCHHHHHHHHHHHHcC-----CEEEEEcchHHHHHhc
Confidence 468999999997521111 123447788887777 9999999999999985
No 135
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=95.15 E-value=0.051 Score=45.64 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=35.7
Q ss_pred cccCCEEEECCCCCCCc--cch--HHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 117 LELVNGVLYTGGWAKDG--LYY--AIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 117 l~~~dgvIlpGG~~~~~--~~~--~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
.+++|.|++|||+.... ... ....++++...+++ ++|.+||-|..+|+.+
T Consensus 67 ~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~i~aic~G~~~La~a 120 (195)
T cd03138 67 VPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANG-----ATVAAACTGVFLLAEA 120 (195)
T ss_pred cCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcC-----CEEEEecHHHHHHHHc
Confidence 45789999999865321 111 12336666666666 9999999999999985
No 136
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=95.14 E-value=0.12 Score=45.93 Aligned_cols=98 Identities=17% Similarity=0.224 Sum_probs=63.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCe-EEEeecCC----ChhhHHHhcccCCEEEECCCCCC--
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGAR-VIPLIYNE----PEDVLFEKLELVNGVLYTGGWAK-- 131 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~-~v~i~~~~----~~~~l~~~l~~~dgvIlpGG~~~-- 131 (250)
..|.|+|+...+. ....|. +.|.++++++|++ +.++.... +.++..+.++++|+|+++||...
T Consensus 27 ~~~rI~~iptAS~---------~~~~~~-~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l 96 (250)
T TIGR02069 27 EDAIIVIITSASE---------EPREVG-ERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRI 96 (250)
T ss_pred CCceEEEEeCCCC---------ChHHHH-HHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHH
Confidence 3578998875432 223443 4688999999984 55555431 12233456789999999999752
Q ss_pred CccchH-HHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 132 DGLYYA-IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 132 ~~~~~~-~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
-..+.+ .....++.+++++ .|+.|+--|.-+|...
T Consensus 97 ~~~l~~t~l~~~l~~~~~~G-----~vi~G~SAGA~i~~~~ 132 (250)
T TIGR02069 97 TSLLGDTPLLDRLRKRVHEG-----IILGGTSAGAAVMSDT 132 (250)
T ss_pred HHHHcCCcHHHHHHHHHHcC-----CeEEEccHHHHhcccc
Confidence 011111 1235666677777 9999999999988654
No 137
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=95.08 E-value=0.082 Score=50.55 Aligned_cols=88 Identities=20% Similarity=0.360 Sum_probs=60.0
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcc-cCCEEEECCCCCCCccchHH-
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLE-LVNGVLYTGGWAKDGLYYAI- 138 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~-~~dgvIlpGG~~~~~~~~~~- 138 (250)
.+|+|-... ...|-+....+.|+++|++++.+..-.+.+ +. .+|+|.|+||-- ..+.+.
T Consensus 246 ~rIAVA~D~------------AF~FyY~~nl~~Lr~~GAelv~FSPL~D~~-----lP~~~D~vYlgGGYP--ElfA~~L 306 (451)
T COG1797 246 VRIAVARDA------------AFNFYYPENLELLREAGAELVFFSPLADEE-----LPPDVDAVYLGGGYP--ELFAEEL 306 (451)
T ss_pred ceEEEEecc------------hhccccHHHHHHHHHCCCEEEEeCCcCCCC-----CCCCCCEEEeCCCCh--HHHHHHH
Confidence 589995432 344445667889999999999886544322 44 699999999953 122222
Q ss_pred -----HHHHHHHHHHhCCCCCCceEEcccchhHHHHHHh
Q 025574 139 -----VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (250)
Q Consensus 139 -----~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~ 172 (250)
..+-++.+.+.+ +||+|=|=|+--|+..+
T Consensus 307 ~~n~~~~~~i~~~~~~G-----~piyaECGGlMYL~~~l 340 (451)
T COG1797 307 SANESMRRAIKAFAAAG-----KPIYAECGGLMYLGESL 340 (451)
T ss_pred hhCHHHHHHHHHHHHcC-----CceEEecccceeehhhe
Confidence 123455555666 99999999998888764
No 138
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=94.88 E-value=0.094 Score=46.13 Aligned_cols=68 Identities=16% Similarity=0.110 Sum_probs=42.0
Q ss_pred HHHHHHcCCeEEEeecCCC-------------hhhH-HHhcccCCEEEECCC-CCCCccchH---HHHHHHHHHHHhCCC
Q 025574 91 VKFVESAGARVIPLIYNEP-------------EDVL-FEKLELVNGVLYTGG-WAKDGLYYA---IVEKVFKKILEKNDA 152 (250)
Q Consensus 91 v~~le~~G~~~v~i~~~~~-------------~~~l-~~~l~~~dgvIlpGG-~~~~~~~~~---~~~~li~~~~~~~~~ 152 (250)
.+.|++.|++++....+.. +.-+ +..-+.+|.|||||| +. ..... ...++++...+.+
T Consensus 25 ~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g--~e~L~~~~~v~~lvK~q~~~g-- 100 (247)
T KOG2764|consen 25 IDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPG--AETLSECEKVVDLVKEQAESG-- 100 (247)
T ss_pred HHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchh--hhhhhhcHHHHHHHHHHHhcC--
Confidence 4567788887776653321 0000 112367999999999 44 22222 2346676666666
Q ss_pred CCCceEEcccchh
Q 025574 153 GDHFPLYAHCLGF 165 (250)
Q Consensus 153 g~~~PILGIClG~ 165 (250)
++|..||.|=
T Consensus 101 ---kLIaaICaap 110 (247)
T KOG2764|consen 101 ---KLIAAICAAP 110 (247)
T ss_pred ---CeEEEeecch
Confidence 9999999985
No 139
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=94.78 E-value=0.21 Score=43.34 Aligned_cols=96 Identities=17% Similarity=0.267 Sum_probs=63.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCe-EEEeecCC----ChhhHHHhcccCCEEEECCCCCCCc
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGAR-VIPLIYNE----PEDVLFEKLELVNGVLYTGGWAKDG 133 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~-~v~i~~~~----~~~~l~~~l~~~dgvIlpGG~~~~~ 133 (250)
..|.|.++..... ....+ ...|.+++++.|++ +..+.... +...+.+.++++|+|++.||...
T Consensus 28 ~~~~i~~iptA~~---------~~~~~-~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~-- 95 (217)
T cd03145 28 AGARIVVIPAASE---------EPAEV-GEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQL-- 95 (217)
T ss_pred CCCcEEEEeCCCc---------ChhHH-HHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHH--
Confidence 3578888876542 12333 45688899999985 44443331 23334456889999999999752
Q ss_pred cchHH-----HHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 134 LYYAI-----VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 134 ~~~~~-----~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
.+... ..+.++.+++++ .|+.|+--|.-++...
T Consensus 96 ~~~~~l~~t~l~~~l~~~~~~G-----~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 96 RITSALGGTPLLDALRKVYRGG-----VVIGGTSAGAAVMSDT 133 (217)
T ss_pred HHHHHHcCChHHHHHHHHHHcC-----CEEEEccHHHHhhhhc
Confidence 12221 235677777777 9999999999888764
No 140
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=94.03 E-value=0.097 Score=43.64 Aligned_cols=50 Identities=12% Similarity=0.075 Sum_probs=35.2
Q ss_pred cccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 117 LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 117 l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
..++|.|++|||............++++...+++ +.|.+||-|..+|+.+
T Consensus 62 ~~~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~-----~~i~aic~g~~~La~a 111 (185)
T cd03136 62 APPLDYLFVVGGLGARRAVTPALLAWLRRAARRG-----VALGGIDTGAFLLARA 111 (185)
T ss_pred cCCCCEEEEeCCCCccccCCHHHHHHHHHHHhcC-----CEEEEEcHHHHHHHHc
Confidence 3568999999986532111122336666666666 9999999999999975
No 141
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=93.89 E-value=0.064 Score=44.29 Aligned_cols=50 Identities=20% Similarity=0.235 Sum_probs=35.2
Q ss_pred cccCCEEEECCCCCCCccc--hHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 117 LELVNGVLYTGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 117 l~~~dgvIlpGG~~~~~~~--~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
...+|.|++|||....... ......+++.+.+++ ++|.+||-|-.+|+.+
T Consensus 61 ~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~-----~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 61 LEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKG-----KLVAAICAAPAVLLAA 112 (179)
T ss_pred cccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCC-----CEEEEEChhHHHHHhc
Confidence 3568999999985311111 112346677776777 9999999999999985
No 142
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=93.53 E-value=0.17 Score=46.04 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=34.9
Q ss_pred cccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 117 LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 117 l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
.+.+|.||+|||............++++...+++ ++|.|||-|--+|+.+
T Consensus 73 ~~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~-----~~i~aic~g~~~La~a 122 (322)
T PRK09393 73 LDRADTIVIPGWRGPDAPVPEPLLEALRAAHARG-----ARLCSICSGVFVLAAA 122 (322)
T ss_pred cCCCCEEEECCCCcccccCCHHHHHHHHHHHHcC-----CEEEEEcHHHHHHHhc
Confidence 5678999999986532211222335566655555 9999999999998885
No 143
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=93.00 E-value=0.47 Score=41.45 Aligned_cols=94 Identities=14% Similarity=0.212 Sum_probs=64.6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecC-CChhhHHHhcccCCEEEECCCCCCC--ccch
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN-EPEDVLFEKLELVNGVLYTGGWAKD--GLYY 136 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~-~~~~~l~~~l~~~dgvIlpGG~~~~--~~~~ 136 (250)
++.|..+-..+. ....+.|+.+ ..++++..|..+.-++.. .+.+.+...+.+.|.|++.||.-+. -.+.
T Consensus 32 ~~~i~FIPtAs~-------~~~~~~Yv~k-~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~LL~~lk 103 (224)
T COG3340 32 RKTIAFIPTASV-------DSEDDFYVEK-VRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFNLLQELK 103 (224)
T ss_pred CceEEEEecCcc-------ccchHHHHHH-HHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHHHHHHHHH
Confidence 566666543322 1244667765 678999999999888764 3566777778889999999997631 1111
Q ss_pred HH-HHHHHHHHHHhCCCCCCceEEcccchhH
Q 025574 137 AI-VEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (250)
Q Consensus 137 ~~-~~~li~~~~~~~~~g~~~PILGIClG~Q 166 (250)
+. ..++++..++++ +|..|+--|.-
T Consensus 104 e~gld~iIr~~vk~G-----~~YiG~SAGA~ 129 (224)
T COG3340 104 ETGLDDIIRERVKAG-----TPYIGWSAGAN 129 (224)
T ss_pred HhCcHHHHHHHHHcC-----CceEEeccCce
Confidence 11 237788887888 99999988763
No 144
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=92.84 E-value=0.28 Score=50.70 Aligned_cols=96 Identities=17% Similarity=0.279 Sum_probs=56.6
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCC-----
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD----- 132 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~----- 132 (250)
.++|.|.|+--.+.+. .+...-++..+|.+++-+..+.-.+ =.-.++++-||+++||.++.
T Consensus 1056 s~~PkVAilREeGvNg-------------~rEMa~af~~AgF~~~DVtmtDlL~-G~~~ld~frGlaf~GGFSYaDvLgS 1121 (1320)
T KOG1907|consen 1056 STAPKVAILREEGVNG-------------DREMAAAFYAAGFETVDVTMTDLLA-GRHHLDDFRGLAFCGGFSYADVLGS 1121 (1320)
T ss_pred cCCCceEEeecccccc-------------HHHHHHHHHHcCCceeeeeeehhhc-CceeHhHhcceeeecCcchHhhhcc
Confidence 3589999998765421 1233447788998877554321000 01135678999999998631
Q ss_pred -ccchHH------HHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 133 -GLYYAI------VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 133 -~~~~~~------~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
..|... ...=+++++.+. | .=-||||.|.|+|+..
T Consensus 1122 akGWAasil~ne~v~~QF~~F~~R~---D-tFslGiCNGCQlms~L 1163 (1320)
T KOG1907|consen 1122 AKGWAASILFNESVRSQFEAFFNRQ---D-TFSLGICNGCQLMSRL 1163 (1320)
T ss_pred ccchhhheeeChhHHHHHHHHhcCC---C-ceeeecccHhHHHHHh
Confidence 122211 112233333332 2 4569999999999986
No 145
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=92.38 E-value=0.13 Score=42.11 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=31.9
Q ss_pred cccCCEEEECCCCCCCc-cchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 117 LELVNGVLYTGGWAKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 117 l~~~dgvIlpGG~~~~~-~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
...+|.||+|||+.... .......+.++...+++ .+|.+||-|..+|+.+
T Consensus 59 ~~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~-----~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 59 APDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQG-----TYIAAICTGALLLAEA 109 (166)
T ss_dssp CSCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCT-----SEEEEETTHHHHHHHT
T ss_pred cccCCEEEeCCCCCchhcccCHHHHHHhhhhhccc-----eEEeeeehHHHHHhhh
Confidence 55789999999988111 00111223344443444 9999999999999986
No 146
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.13 E-value=0.52 Score=43.29 Aligned_cols=83 Identities=22% Similarity=0.185 Sum_probs=49.7
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCCh-----------------hhHHHhcccCCEEE
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE-----------------DVLFEKLELVNGVL 124 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~-----------------~~l~~~l~~~dgvI 124 (250)
.|||+.++... ...-+...+.+||++.|..+......... +......+.+|.+|
T Consensus 7 ~I~iv~~~~~~---------~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 77 (306)
T PRK03372 7 RVLLVAHTGRD---------EATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVL 77 (306)
T ss_pred EEEEEecCCCH---------HHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEE
Confidence 49999887531 22234566888999999888765421100 00012234589999
Q ss_pred ECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 125 YTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 125 lpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
.-||-+ .+. ...+.+...+ +|||||-.|.
T Consensus 78 ~lGGDG---T~L----~aar~~~~~~-----~PilGIN~G~ 106 (306)
T PRK03372 78 VLGGDG---TIL----RAAELARAAD-----VPVLGVNLGH 106 (306)
T ss_pred EEcCCH---HHH----HHHHHhccCC-----CcEEEEecCC
Confidence 999855 222 2333333445 9999999884
No 147
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.31 E-value=0.8 Score=41.77 Aligned_cols=83 Identities=19% Similarity=0.073 Sum_probs=49.9
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCCh-----------h---hHHHhcccCCEEEECC
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE-----------D---VLFEKLELVNGVLYTG 127 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~-----------~---~l~~~l~~~dgvIlpG 127 (250)
.|||..++.. ....-+...+.+||++.|..+..-...... . ......+.+|-+|.-|
T Consensus 2 ~igii~~~~~---------~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lG 72 (292)
T PRK01911 2 KIAIFGQTYQ---------ESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIG 72 (292)
T ss_pred EEEEEeCCCC---------HHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEEC
Confidence 3889887753 223344566888999999988764321100 0 0112223589999999
Q ss_pred CCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 128 GWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 128 G~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
|-+ .+. ...+.+...+ +|||||-.|.
T Consensus 73 GDG---T~L----~aa~~~~~~~-----~PilGIN~G~ 98 (292)
T PRK01911 73 GDG---TFL----RTATYVGNSN-----IPILGINTGR 98 (292)
T ss_pred CcH---HHH----HHHHHhcCCC-----CCEEEEecCC
Confidence 955 222 2233333345 9999999986
No 148
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.09 E-value=0.75 Score=41.93 Aligned_cols=84 Identities=19% Similarity=0.142 Sum_probs=50.7
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC--------hhhHHHhcccCCEEEECCCCCCC
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--------EDVLFEKLELVNGVLYTGGWAKD 132 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~--------~~~l~~~l~~~dgvIlpGG~~~~ 132 (250)
..|||..++.. ....-+...+.+||++.|.++........ .....+..+.+|.+|.-||-+
T Consensus 6 ~~i~iv~~~~~---------~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGDG-- 74 (292)
T PRK03378 6 KCIGIVGHPRH---------PTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGDG-- 74 (292)
T ss_pred CEEEEEEeCCC---------HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCcH--
Confidence 35999988754 22333456688899999988775432110 001122234689999999955
Q ss_pred ccchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 133 ~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
.+. ...+.+...+ +||+||-.|.
T Consensus 75 -T~L----~aa~~~~~~~-----~Pilgin~G~ 97 (292)
T PRK03378 75 -NML----GAARVLARYD-----IKVIGINRGN 97 (292)
T ss_pred -HHH----HHHHHhcCCC-----CeEEEEECCC
Confidence 222 2233333334 9999999987
No 149
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.78 E-value=0.82 Score=41.98 Aligned_cols=83 Identities=18% Similarity=0.107 Sum_probs=49.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC-----h------------hhHHHhcccCCEEE
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-----E------------DVLFEKLELVNGVL 124 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~-----~------------~~l~~~l~~~dgvI 124 (250)
.|||..++.. ....-+...+.+|+++.|..++....... . .......+.+|-+|
T Consensus 3 ~igiv~n~~~---------~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi 73 (305)
T PRK02649 3 KAGIIYNDGK---------PLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAI 73 (305)
T ss_pred EEEEEEcCCC---------HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEE
Confidence 4899887743 22333566788899999988866432100 0 00112223589999
Q ss_pred ECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 125 YTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 125 lpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
.-||-+ .+. ...+.+...+ +|||||-.|.
T Consensus 74 ~iGGDG---TlL----~aar~~~~~~-----iPilGIN~G~ 102 (305)
T PRK02649 74 VLGGDG---TVL----SAARQLAPCG-----IPLLTINTGH 102 (305)
T ss_pred EEeCcH---HHH----HHHHHhcCCC-----CcEEEEeCCC
Confidence 999855 222 3334333445 9999999873
No 150
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.35 E-value=1.1 Score=40.89 Aligned_cols=83 Identities=22% Similarity=0.212 Sum_probs=49.8
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC---h----------hhHHHhcccCCEEEECCC
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP---E----------DVLFEKLELVNGVLYTGG 128 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~---~----------~~l~~~l~~~dgvIlpGG 128 (250)
.|||..++.. ....-+...+.+||++.|..++.-..... . ....+..+.+|-+|.-||
T Consensus 7 ~i~ii~~~~~---------~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGG 77 (296)
T PRK04539 7 NIGIVTRPNT---------PDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGG 77 (296)
T ss_pred EEEEEecCCC---------HHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECC
Confidence 4999988754 12233456688899999998876432111 0 001122235899999999
Q ss_pred CCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 129 WAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 129 ~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
-+ .+. ...+.+...+ +||+||-.|.
T Consensus 78 DG---T~L----~aa~~~~~~~-----~PilGIN~G~ 102 (296)
T PRK04539 78 DG---TFL----SVAREIAPRA-----VPIIGINQGH 102 (296)
T ss_pred cH---HHH----HHHHHhcccC-----CCEEEEecCC
Confidence 55 222 2233333345 9999999986
No 151
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=88.15 E-value=1.8 Score=39.41 Aligned_cols=83 Identities=12% Similarity=0.014 Sum_probs=49.2
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC---h-----hhHHHhcccCCEEEECCCCCCCc
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP---E-----DVLFEKLELVNGVLYTGGWAKDG 133 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~---~-----~~l~~~l~~~dgvIlpGG~~~~~ 133 (250)
.|||..++.. ....-+...+.+++++.|..+........ . ....+..+.+|.+|.-||-+
T Consensus 7 ~v~iv~~~~~---------~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG--- 74 (291)
T PRK02155 7 TVALIGRYQT---------PGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGDG--- 74 (291)
T ss_pred EEEEEecCCC---------HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCcH---
Confidence 5999887753 12333456788899999988665431110 0 01112223578888888854
Q ss_pred cchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 134 ~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
.+ -..++.....+ +|+|||-.|.
T Consensus 75 t~----l~~~~~~~~~~-----~pilGIn~G~ 97 (291)
T PRK02155 75 TM----LGIGRQLAPYG-----VPLIGINHGR 97 (291)
T ss_pred HH----HHHHHHhcCCC-----CCEEEEcCCC
Confidence 22 23334333345 9999999986
No 152
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.37 E-value=1.9 Score=39.21 Aligned_cols=82 Identities=16% Similarity=0.088 Sum_probs=49.3
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCCh-----hhHHHhcccCCEEEECCCCCCCccch
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE-----DVLFEKLELVNGVLYTGGWAKDGLYY 136 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~-----~~l~~~l~~~dgvIlpGG~~~~~~~~ 136 (250)
.|||..++.. ...-+...+.+|+++.|..+..-...... ....+..+.+|-+|.-||-+ .+.
T Consensus 12 ~i~ii~~~~~----------~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDG---T~L 78 (287)
T PRK14077 12 KIGLVTRPNV----------SLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGGDG---TLI 78 (287)
T ss_pred EEEEEeCCcH----------HHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECCCH---HHH
Confidence 6999988742 12234556788999999887764321100 00112224689999999855 222
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 137 AIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 137 ~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
...+.+...+ +|||||-.|.
T Consensus 79 ----~aa~~~~~~~-----~PilGIN~G~ 98 (287)
T PRK14077 79 ----SLCRKAAEYD-----KFVLGIHAGH 98 (287)
T ss_pred ----HHHHHhcCCC-----CcEEEEeCCC
Confidence 2333333345 9999999986
No 153
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.95 E-value=2 Score=39.19 Aligned_cols=83 Identities=17% Similarity=0.117 Sum_probs=49.9
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC--------hhhHHHhcccCCEEEECCCCCCCc
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--------EDVLFEKLELVNGVLYTGGWAKDG 133 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~--------~~~l~~~l~~~dgvIlpGG~~~~~ 133 (250)
.|||..++.. ....-+.+.+.+|+++.|..+.+...... ........+.+|-||.-||-.
T Consensus 6 ~v~iv~~~~k---------~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG--- 73 (295)
T PRK01231 6 NIGLIGRLGS---------SSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDG--- 73 (295)
T ss_pred EEEEEecCCC---------HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcH---
Confidence 5999988754 23445566788999999988776542110 000111223578888888854
Q ss_pred cchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 134 ~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
. .....+.+...+ +||+||-.|.
T Consensus 74 t----~l~~~~~~~~~~-----~Pvlgin~G~ 96 (295)
T PRK01231 74 S----LLGAARALARHN-----VPVLGINRGR 96 (295)
T ss_pred H----HHHHHHHhcCCC-----CCEEEEeCCc
Confidence 2 222333333344 9999999885
No 154
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=86.12 E-value=1.5 Score=41.36 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=33.8
Q ss_pred cccCCEEEECCCCCCCccchH----HHHHHHHHHHHhCCCCCCceEEcccchhHHHHH
Q 025574 117 LELVNGVLYTGGWAKDGLYYA----IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (250)
Q Consensus 117 l~~~dgvIlpGG~~~~~~~~~----~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~ 170 (250)
...++.+|+|||.+. .|.+ ...+.|+..++.+ .-.||||.|.-+-+.
T Consensus 47 ~~~~~LlV~PGG~d~--~y~~~l~~~g~~~Ir~fV~~G-----G~YlGiCAGaY~as~ 97 (367)
T PF09825_consen 47 QSKCALLVMPGGADL--PYCRSLNGEGNRRIRQFVENG-----GGYLGICAGAYYASS 97 (367)
T ss_pred ccCCcEEEECCCcch--HHHHhhChHHHHHHHHHHHcC-----CcEEEECcchhhhcc
Confidence 467899999999873 2322 2235677777777 789999999866554
No 155
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=85.72 E-value=17 Score=30.98 Aligned_cols=108 Identities=11% Similarity=0.052 Sum_probs=54.0
Q ss_pred HHHHHHHH-HcCCeEEEeecCCChhhH-HHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 88 ASYVKFVE-SAGARVIPLIYNEPEDVL-FEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 88 ~s~v~~le-~~G~~~v~i~~~~~~~~l-~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
..+.+.++ ..|.++.... +.+.+ .+.|+++|.||+...... .+.......++..++++ .+++|+..++
T Consensus 22 ~~l~~ll~~~~~~~v~~~~---~~~~~~~~~L~~~Dvvv~~~~~~~--~l~~~~~~al~~~v~~G-----gglv~lH~~~ 91 (217)
T PF06283_consen 22 KALAQLLEESEGFEVTVTE---DPDDLTPENLKGYDVVVFYNTGGD--ELTDEQRAALRDYVENG-----GGLVGLHGAA 91 (217)
T ss_dssp HHHHHHHHHTTCEEEEECC---SGGCTSHHCHCT-SEEEEE-SSCC--GS-HHHHHHHHHHHHTT------EEEEEGGGG
T ss_pred HHHHHHhccCCCEEEEEEe---CcccCChhHhcCCCEEEEECCCCC--cCCHHHHHHHHHHHHcC-----CCEEEEcccc
Confidence 33555666 4566665543 22222 235789999998776531 12333345556666777 9999999443
Q ss_pred -------HHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhh
Q 025574 166 -------ELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLI 212 (250)
Q Consensus 166 -------QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~ 212 (250)
.-....+||.. ..+....+...... ..++++.+++|+.+.
T Consensus 92 ~~~~~~~~~~~~l~Gg~f------~~h~~~~~~~v~~~-~~~HPi~~gl~~~f~ 138 (217)
T PF06283_consen 92 TDSFPDWPEYNELLGGYF------KGHPPPQPFTVRVE-DPDHPITRGLPESFT 138 (217)
T ss_dssp GCCHTT-HHHHHHHS--S------EEEECEEEEEEEES-STTSCCCTTS-SEEE
T ss_pred cccchhHHHHHHeeCccc------cCCCCCceEEEEEc-CCCChhhcCCCCCce
Confidence 12333456641 11111222222222 226889999986654
No 156
>PRK01215 competence damage-inducible protein A; Provisional
Probab=84.51 E-value=4.4 Score=36.41 Aligned_cols=69 Identities=23% Similarity=0.199 Sum_probs=39.6
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEee-cCCChhhH----HHhcccCCEEEECCCCCC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI-YNEPEDVL----FEKLELVNGVLYTGGWAK 131 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~-~~~~~~~l----~~~l~~~dgvIlpGG~~~ 131 (250)
+++|.++|++--..-..|.. .+....|+ .+.+++.|+++.... ...+.+.+ .+.++.+|-||.+||-+.
T Consensus 1 ~~~~~v~Ii~~GdEll~G~i-~dtn~~~l----~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g~ 74 (264)
T PRK01215 1 MDKWFAWIITIGNELLIGRT-VNTNASWI----ARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLGP 74 (264)
T ss_pred CCCCEEEEEEEChhccCCeE-EEhhHHHH----HHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 35789999764422112221 12233344 457999999875443 22344433 334456899999998763
No 157
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=83.84 E-value=8.1 Score=36.93 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=42.6
Q ss_pred CCCCcEEEEeCCCCCCC-CC-CCCCCCcchhhHHHHHHHHHHcCCeEEEeecC-CChhhHH----HhcccCCEEEECCCC
Q 025574 57 LNYRPVIGIVTHPGDGA-SG-RLNNATNASYIAASYVKFVESAGARVIPLIYN-EPEDVLF----EKLELVNGVLYTGGW 129 (250)
Q Consensus 57 ~~~~PvIGI~~~~~~~~-~~-~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~-~~~~~l~----~~l~~~dgvIlpGG~ 129 (250)
...||.|||++.-..-- .+ .+..++-.......+...+++.|++++-...- .+++.+. +.++.+|-||.+||.
T Consensus 173 V~rkprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG~ 252 (404)
T COG0303 173 VYRKPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGGV 252 (404)
T ss_pred EecCCEEEEEecCccccCCCCCCCCCeEEecCHHHHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCCc
Confidence 46789999986542111 11 11111111122222345889999988765543 2344443 334569999999998
Q ss_pred CC
Q 025574 130 AK 131 (250)
Q Consensus 130 ~~ 131 (250)
+.
T Consensus 253 Sv 254 (404)
T COG0303 253 SV 254 (404)
T ss_pred cC
Confidence 85
No 158
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=83.81 E-value=3.1 Score=40.78 Aligned_cols=83 Identities=17% Similarity=0.183 Sum_probs=48.1
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHH-HcCCeEEEeecCCC-----------------hhhHHHhcccCCE
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVE-SAGARVIPLIYNEP-----------------EDVLFEKLELVNG 122 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le-~~G~~~v~i~~~~~-----------------~~~l~~~l~~~dg 122 (250)
..|||+..+.. ....-+...+++||+ ..|..+++-+.... .+.+......+|.
T Consensus 195 ~~VgIV~n~~k---------~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~Dl 265 (508)
T PLN02935 195 QTVLIITKPNS---------TSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDL 265 (508)
T ss_pred CEEEEEecCCC---------HHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCE
Confidence 37999988754 223334566788998 47777765331100 0111112246899
Q ss_pred EEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccch
Q 025574 123 VLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (250)
Q Consensus 123 vIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG 164 (250)
||.-||-+ .+. ...+.+...+ +|||||-+|
T Consensus 266 VIsiGGDG---TlL----~Aar~~~~~~-----iPILGIN~G 295 (508)
T PLN02935 266 VITLGGDG---TVL----WAASMFKGPV-----PPVVPFSMG 295 (508)
T ss_pred EEEECCcH---HHH----HHHHHhccCC-----CcEEEEeCC
Confidence 99999955 222 2233333344 999999977
No 159
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=83.70 E-value=8.5 Score=31.85 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=38.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeec-CCChhhHHHhc------ccCCEEEECCCCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLFEKL------ELVNGVLYTGGWAK 131 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~~~l------~~~dgvIlpGG~~~ 131 (250)
.+|.|||++--.... . ..+....+ +..++++.|+++..... ..+.+.+.+.+ +.+|-||.+||-+.
T Consensus 3 ~~~rv~vit~~d~~~--~-~~d~n~~~----l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~ 75 (163)
T TIGR02667 3 IPLRIAILTVSDTRT--E-EDDTSGQY----LVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGF 75 (163)
T ss_pred CccEEEEEEEeCcCC--c-cCCCcHHH----HHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 468899976443211 1 11222223 34578999998764432 23444443322 35899999999775
Q ss_pred C
Q 025574 132 D 132 (250)
Q Consensus 132 ~ 132 (250)
.
T Consensus 76 g 76 (163)
T TIGR02667 76 T 76 (163)
T ss_pred C
Confidence 3
No 160
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.14 E-value=3.4 Score=37.32 Aligned_cols=82 Identities=17% Similarity=0.166 Sum_probs=49.3
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC----hh--hHHHh-cccCCEEEECCCCCCCcc
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP----ED--VLFEK-LELVNGVLYTGGWAKDGL 134 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~----~~--~l~~~-l~~~dgvIlpGG~~~~~~ 134 (250)
.|||..+++. ....-+.+.+.+||++.|.++.+...... .. ..... .+.+|.+|.-||-+ .
T Consensus 2 ~v~iv~~~~k---------~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG---T 69 (277)
T PRK03708 2 RFGIVARRDK---------EEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDG---T 69 (277)
T ss_pred EEEEEecCCC---------HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcH---H
Confidence 3788877754 22334566788899999998877532110 00 00011 13589999998855 2
Q ss_pred chHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 135 YYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 135 ~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
..+.++ ....+ +||+||=.|.
T Consensus 70 ----lL~a~~-~~~~~-----~pi~gIn~G~ 90 (277)
T PRK03708 70 ----ILRIEH-KTKKD-----IPILGINMGT 90 (277)
T ss_pred ----HHHHHH-hcCCC-----CeEEEEeCCC
Confidence 223334 33344 9999999987
No 161
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=82.22 E-value=6.5 Score=33.55 Aligned_cols=57 Identities=26% Similarity=0.420 Sum_probs=39.9
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC-----------------------hhhHHHhcc
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-----------------------EDVLFEKLE 118 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~-----------------------~~~l~~~l~ 118 (250)
+++|+..|.. .....-+.....+.+++.|+++..+..... .+++.+.+.
T Consensus 3 i~~I~gs~r~--------~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~ 74 (207)
T COG0655 3 ILGINGSPRS--------NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLL 74 (207)
T ss_pred eeEEEecCCC--------CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHH
Confidence 5777777753 245666777788999999998887765531 244445577
Q ss_pred cCCEEEEC
Q 025574 119 LVNGVLYT 126 (250)
Q Consensus 119 ~~dgvIlp 126 (250)
.+|||||.
T Consensus 75 ~aD~iI~g 82 (207)
T COG0655 75 EADGIIFG 82 (207)
T ss_pred HCCEEEEe
Confidence 79999885
No 162
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=82.16 E-value=2.8 Score=33.94 Aligned_cols=49 Identities=20% Similarity=0.207 Sum_probs=31.4
Q ss_pred cccCCEEEECCCCCCC--ccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcC
Q 025574 117 LELVNGVLYTGGWAKD--GLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISK 174 (250)
Q Consensus 117 l~~~dgvIlpGG~~~~--~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG 174 (250)
+.++|.|+|-||-++. +.-.+..++++++ ..+ +|+.|+| +|-|....|=
T Consensus 83 ~n~aDvvVLlGGLaMP~~gv~~d~~kel~ee--~~~-----kkliGvC--fm~mF~ragW 133 (154)
T COG4090 83 LNSADVVVLLGGLAMPKIGVTPDDAKELLEE--LGN-----KKLIGVC--FMNMFERAGW 133 (154)
T ss_pred cccccEEEEEcccccCcCCCCHHHHHHHHHh--cCC-----CceEEee--HHHHHHHcCc
Confidence 6679999999998752 1122334455552 234 7999999 6666655443
No 163
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.38 E-value=4.6 Score=36.46 Aligned_cols=65 Identities=15% Similarity=0.105 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCeEEEeecCCC-----h---hhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEE
Q 025574 88 ASYVKFVESAGARVIPLIYNEP-----E---DVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~-----~---~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PIL 159 (250)
..+.+|+++.|..+..-+.... . ....+..+.+|-+|.-||-+ .+. ...+.+...+ +|||
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG---T~L----~aa~~~~~~~-----~Pil 70 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIGQRAQLAIVIGGDG---NML----GRARVLAKYD-----IPLI 70 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHhCcCCCEEEEECCcH---HHH----HHHHHhccCC-----CcEE
Confidence 4467899999988776432110 0 01122234589999999955 222 2233333345 9999
Q ss_pred cccch
Q 025574 160 AHCLG 164 (250)
Q Consensus 160 GIClG 164 (250)
||-.|
T Consensus 71 gIn~G 75 (272)
T PRK02231 71 GINRG 75 (272)
T ss_pred EEeCC
Confidence 99988
No 164
>PLN02929 NADH kinase
Probab=78.86 E-value=4.1 Score=37.38 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccch
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG 164 (250)
....++|++.|.++..+... ++...+..+|.||.-||-+ .+. ...+.+ ..+ +||+||-.|
T Consensus 37 ~~~~~~L~~~gi~~~~v~r~----~~~~~~~~~Dlvi~lGGDG---T~L----~aa~~~-~~~-----iPvlGIN~G 96 (301)
T PLN02929 37 NFCKDILQQKSVDWECVLRN----ELSQPIRDVDLVVAVGGDG---TLL----QASHFL-DDS-----IPVLGVNSD 96 (301)
T ss_pred HHHHHHHHHcCCEEEEeecc----ccccccCCCCEEEEECCcH---HHH----HHHHHc-CCC-----CcEEEEECC
Confidence 44677999999988654321 1123467889999999955 222 223333 445 999999998
No 165
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=78.83 E-value=16 Score=29.42 Aligned_cols=44 Identities=23% Similarity=0.235 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCeEEEeec-CCChhhHH----HhcccCCEEEECCCCCCC
Q 025574 89 SYVKFVESAGARVIPLIY-NEPEDVLF----EKLELVNGVLYTGGWAKD 132 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~-~~~~~~l~----~~l~~~dgvIlpGG~~~~ 132 (250)
.+..++++.|+++..... ..+.+.+. +.++++|-||.+||-+..
T Consensus 31 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~g 79 (144)
T TIGR00177 31 LLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGVG 79 (144)
T ss_pred HHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCCC
Confidence 345689999998875543 23444443 334578999999997753
No 166
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=78.28 E-value=7.3 Score=41.88 Aligned_cols=99 Identities=19% Similarity=0.284 Sum_probs=58.4
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC---ChhhHHHhccc-----CCEEEECCCC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE---PEDVLFEKLEL-----VNGVLYTGGW 129 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~---~~~~l~~~l~~-----~dgvIlpGG~ 129 (250)
..+|+|||+.....-. .....++. .+++.||+.|+.++++-... ..+.+.+.+.. +|.||-.-+.
T Consensus 69 ~~~P~VgIlfyrs~~~------~g~~~~vd-aLI~~LE~~G~nvipvf~~~~~~~~~~i~~~f~~~g~~~vDaIIn~~~f 141 (1098)
T PF02514_consen 69 PNRPTVGILFYRSYWL------SGNTAVVD-ALIRALEERGLNVIPVFCSSGPDSQEAIEDYFMDDGKPRVDAIINLTGF 141 (1098)
T ss_pred CCCCEEEEEeehhhhh------cCCcHHHH-HHHHHHHHCCCeEEEEEecCccchHHHHHHHHhhcCCCCceEEEEcCcc
Confidence 4799999998665422 23344554 58999999999999887432 33445555544 8888877665
Q ss_pred CCCccchHHHHHHHHHHHHhCCCCCCceEE-cccchhHHHHHH
Q 025574 130 AKDGLYYAIVEKVFKKILEKNDAGDHFPLY-AHCLGFELLTMI 171 (250)
Q Consensus 130 ~~~~~~~~~~~~li~~~~~~~~~g~~~PIL-GIClG~QlL~~~ 171 (250)
.....-......+++ +.| +||| +|..-.|-....
T Consensus 142 ~l~~~~~~~~~~~L~---~Ln-----VPVlq~i~~~~~t~eeW 176 (1098)
T PF02514_consen 142 SLGGGPAGGAIELLK---ELN-----VPVLQAITLYYQTREEW 176 (1098)
T ss_pred ccCCCCcchhHHHHH---HCC-----CCEEEeeccCCCCHHHH
Confidence 432111111223333 457 9987 344434444443
No 167
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=78.10 E-value=1.5 Score=39.60 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=46.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHc-CCeEEEeecCC---------------------------ChhhH
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIYNE---------------------------PEDVL 113 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~-G~~~v~i~~~~---------------------------~~~~l 113 (250)
.|||+.+|.. ....-+...+++||++. |..+.. .... .....
T Consensus 1 kVgii~np~~---------~~~~~~~~~~~~~L~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (285)
T PF01513_consen 1 KVGIIANPNK---------PEAIELANELARWLLEKQGIEVLV-EGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALE 70 (285)
T ss_dssp -EEEEESSCG---------HCCCHHHHHHHHHHHHTTTEEEEE-EHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCH
T ss_pred CEEEEEcCCC---------HHHHHHHHHHHHHHHhCCCEEEEE-ChHHHHHHHHhccccccccccccccccccccchhhh
Confidence 3899998863 12334566788999888 544332 2110 00001
Q ss_pred HHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 114 FEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 114 ~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
....+.+|.+|.-||-+ +.....+.+...+ +||+||-.|.
T Consensus 71 ~~~~~~~D~ii~lGGDG-------T~L~~~~~~~~~~-----~Pilgin~G~ 110 (285)
T PF01513_consen 71 EMLEEGVDLIIVLGGDG-------TFLRAARLFGDYD-----IPILGINTGT 110 (285)
T ss_dssp HHHCCCSSEEEEEESHH-------HHHHHHHHCTTST------EEEEEESSS
T ss_pred hhcccCCCEEEEECCCH-------HHHHHHHHhccCC-----CcEEeecCCC
Confidence 11246899999999944 2223334433334 9999999875
No 168
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.78 E-value=5.9 Score=39.40 Aligned_cols=86 Identities=17% Similarity=0.287 Sum_probs=50.2
Q ss_pred CCc-EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCCh-h----h-H--HHhcccCCEEEECCCC
Q 025574 59 YRP-VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE-D----V-L--FEKLELVNGVLYTGGW 129 (250)
Q Consensus 59 ~~P-vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~-~----~-l--~~~l~~~dgvIlpGG~ 129 (250)
.+| .|||..++.. ....-+...+.+|+++.|.++..-...... . . . ...++.+|.+|.-||-
T Consensus 288 ~~~~~i~iv~~~~~---------~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGD 358 (569)
T PRK14076 288 IKPTKFGIVSRIDN---------EEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGD 358 (569)
T ss_pred cCCcEEEEEcCCCC---------HHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCc
Confidence 344 4999988753 223334566788999999877664321100 0 0 0 0113367999999995
Q ss_pred CCCccchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 130 AKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 130 ~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
. .+. ...+.+...+ +|||||-.|.
T Consensus 359 G---T~L----~aa~~~~~~~-----~PilGin~G~ 382 (569)
T PRK14076 359 G---TVL----RASKLVNGEE-----IPIICINMGT 382 (569)
T ss_pred H---HHH----HHHHHhcCCC-----CCEEEEcCCC
Confidence 5 222 2233333345 9999999885
No 169
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=76.87 E-value=13 Score=31.90 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=41.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCe---EEEeecCCChhhHH----Hhcc--cCCEEEECCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGAR---VIPLIYNEPEDVLF----EKLE--LVNGVLYTGGW 129 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~---~v~i~~~~~~~~l~----~~l~--~~dgvIlpGG~ 129 (250)
.++.++|++-......|.. .+....+ +..++++.|+. +.......+.+.+. +.++ .+|-||.+||-
T Consensus 2 ~~~~~aIItvSd~~~~G~i-~D~ng~~----L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGt 76 (193)
T PRK09417 2 DTLKIGLVSISDRASSGVY-EDKGIPA----LEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGT 76 (193)
T ss_pred CCcEEEEEEEcCcCCCCce-eechHHH----HHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 3467888764432222221 1122223 34578888653 22112223444433 3333 68999999998
Q ss_pred CCCccchHHHHHHHHHHHHhC
Q 025574 130 AKDGLYYAIVEKVFKKILEKN 150 (250)
Q Consensus 130 ~~~~~~~~~~~~li~~~~~~~ 150 (250)
+..+.- ...+.++.+.++.
T Consensus 77 g~g~rD--vTpeAv~~l~~ke 95 (193)
T PRK09417 77 GPARRD--VTPEATLAVADKE 95 (193)
T ss_pred CCCCCC--cHHHHHHHHhCCc
Confidence 754321 1224455555433
No 170
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=76.80 E-value=13 Score=29.59 Aligned_cols=94 Identities=18% Similarity=0.249 Sum_probs=54.3
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC------------------hhhHHHhcccCCEE
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP------------------EDVLFEKLELVNGV 123 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~------------------~~~l~~~l~~~dgv 123 (250)
+++|.+.++. ......+++.+.+.+++.|+++..+....- .+.+.+.+..+|+|
T Consensus 3 ilii~gS~r~--------~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~i 74 (152)
T PF03358_consen 3 ILIINGSPRK--------NSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGI 74 (152)
T ss_dssp EEEEESSSST--------TSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEE
T ss_pred EEEEECcCCC--------CCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeE
Confidence 5566666542 234556677777888888999988866531 12334557789998
Q ss_pred EECCCCCCCccchHHHHHHHHHHH-HhCCCCCCceEEcccch
Q 025574 124 LYTGGWAKDGLYYAIVEKVFKKIL-EKNDAGDHFPLYAHCLG 164 (250)
Q Consensus 124 IlpGG~~~~~~~~~~~~~li~~~~-~~~~~g~~~PILGIClG 164 (250)
|+. .|.....+....+.++++.. .....-++||+..|+.|
T Consensus 75 I~~-sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~ 115 (152)
T PF03358_consen 75 IFA-SPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVG 115 (152)
T ss_dssp EEE-EEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEE
T ss_pred EEe-ecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEEe
Confidence 874 22222223334555666553 11122334898888755
No 171
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=76.18 E-value=16 Score=29.65 Aligned_cols=43 Identities=28% Similarity=0.333 Sum_probs=28.4
Q ss_pred HHHHHHHcCCeEEEeec-CCChhhHHH----hcc--cCCEEEECCCCCCC
Q 025574 90 YVKFVESAGARVIPLIY-NEPEDVLFE----KLE--LVNGVLYTGGWAKD 132 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~~-~~~~~~l~~----~l~--~~dgvIlpGG~~~~ 132 (250)
+.+++++.|+++..... ..+.+.+.+ .++ .+|-||.+||-+..
T Consensus 25 l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g 74 (152)
T cd00886 25 LVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLA 74 (152)
T ss_pred HHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCC
Confidence 34589999998765432 334555543 334 68999999997753
No 172
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=75.91 E-value=19 Score=34.38 Aligned_cols=76 Identities=14% Similarity=0.140 Sum_probs=41.0
Q ss_pred CCCCcEEEEeCCCCCC-CCCC-CCCCCcchhhHHHHHHHHHHcCCeEEEeec-CCChhhHHHh----cccCCEEEECCCC
Q 025574 57 LNYRPVIGIVTHPGDG-ASGR-LNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLFEK----LELVNGVLYTGGW 129 (250)
Q Consensus 57 ~~~~PvIGI~~~~~~~-~~~~-~~~~~~~~~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~~~----l~~~dgvIlpGG~ 129 (250)
...||+|||++.-..- ..+. +..+.-..-....+..++++.|++++.... ..+.+.+.+. .+.+|-||.+||-
T Consensus 174 V~~~prV~iistGdEl~~~~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG~ 253 (411)
T PRK10680 174 VVRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGV 253 (411)
T ss_pred ecCCCEEEEEccCCeEeCCCCCCCCCEEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCCC
Confidence 4578999998643110 0010 001111111111234578999998765433 3344444433 3568999999998
Q ss_pred CCC
Q 025574 130 AKD 132 (250)
Q Consensus 130 ~~~ 132 (250)
+..
T Consensus 254 S~G 256 (411)
T PRK10680 254 SVG 256 (411)
T ss_pred CCC
Confidence 753
No 173
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=75.29 E-value=22 Score=34.03 Aligned_cols=77 Identities=9% Similarity=0.065 Sum_probs=41.4
Q ss_pred CCCCCcEEEEeCCCCCC-CCCC-CCCCCcchhhHHHHHHHHHHcCCeEEEeec-CCChhhHHH----hcccCCEEEECCC
Q 025574 56 KLNYRPVIGIVTHPGDG-ASGR-LNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLFE----KLELVNGVLYTGG 128 (250)
Q Consensus 56 ~~~~~PvIGI~~~~~~~-~~~~-~~~~~~~~~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~~----~l~~~dgvIlpGG 128 (250)
....+|.|||++.-..- ..+. +..+.-..-....+...+++.|+++..... ..+.+.+.+ .++++|-||.+||
T Consensus 189 ~V~~~prV~IisTGdEl~~~g~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG 268 (419)
T PRK14690 189 SVRRPLRVAVLSTGDELVEPGALAEVGQIYDANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGG 268 (419)
T ss_pred EeecCCEEEEEEccccccCCCCCCCCCeEEeCHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCC
Confidence 34578999998653211 0110 001111111122234578999998864432 234444433 3456899999999
Q ss_pred CCCC
Q 025574 129 WAKD 132 (250)
Q Consensus 129 ~~~~ 132 (250)
-+..
T Consensus 269 ~S~G 272 (419)
T PRK14690 269 ASAG 272 (419)
T ss_pred ccCC
Confidence 7753
No 174
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=75.09 E-value=18 Score=30.77 Aligned_cols=60 Identities=13% Similarity=0.126 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhC
Q 025574 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~ 150 (250)
+..+.++..|++++...++ +.+.+.+.++.+|.|++.-+... +........+++.+.+.+
T Consensus 35 ~~~~~l~~~g~~vv~~d~~-~~~~l~~al~g~d~v~~~~~~~~-~~~~~~~~~li~Aa~~ag 94 (233)
T PF05368_consen 35 DRAQQLQALGAEVVEADYD-DPESLVAALKGVDAVFSVTPPSH-PSELEQQKNLIDAAKAAG 94 (233)
T ss_dssp HHHHHHHHTTTEEEES-TT--HHHHHHHHTTCSEEEEESSCSC-CCHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhcccceEeecccC-CHHHHHHHHcCCceEEeecCcch-hhhhhhhhhHHHhhhccc
Confidence 3556788899998877765 57778888999999998887653 333344457888888876
No 175
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=74.58 E-value=23 Score=33.45 Aligned_cols=76 Identities=21% Similarity=0.262 Sum_probs=41.5
Q ss_pred CCCCcEEEEeCCCCCCC-CCC-CCCCCcchhhHHHHHHHHHHcCCeEEEeecC-CChhhHH----HhcccCCEEEECCCC
Q 025574 57 LNYRPVIGIVTHPGDGA-SGR-LNNATNASYIAASYVKFVESAGARVIPLIYN-EPEDVLF----EKLELVNGVLYTGGW 129 (250)
Q Consensus 57 ~~~~PvIGI~~~~~~~~-~~~-~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~-~~~~~l~----~~l~~~dgvIlpGG~ 129 (250)
...+|.|||++.-..-. .+. +..+.-.......+..++++.|++++....- .+.+.+. +.++.+|-||.+||-
T Consensus 165 V~~~~rv~ii~tGdEl~~~g~~~~~g~i~dsn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DliittGG~ 244 (394)
T cd00887 165 VYRRPRVAIISTGDELVEPGEPLAPGQIYDSNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVITSGGV 244 (394)
T ss_pred EecCCEEEEEeCCCcccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 45789999986532111 110 0111111122223345788899988755432 3344443 334568999999998
Q ss_pred CCC
Q 025574 130 AKD 132 (250)
Q Consensus 130 ~~~ 132 (250)
+..
T Consensus 245 s~g 247 (394)
T cd00887 245 SVG 247 (394)
T ss_pred CCC
Confidence 753
No 176
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=74.05 E-value=27 Score=29.91 Aligned_cols=46 Identities=11% Similarity=0.054 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCC
Q 025574 84 SYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 84 ~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~ 129 (250)
.-+...+.+.+++.|..++......+.+. ++... .++||||+.++.
T Consensus 15 ~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~ 65 (269)
T cd06281 15 AQLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGD 65 (269)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCC
Confidence 33455677888999999876654433321 22222 368999998753
No 177
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=73.99 E-value=28 Score=29.85 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCC-hhhHHHhc--ccCCEEEECCCC
Q 025574 86 IAASYVKFVESAGARVIPLIYNEP-EDVLFEKL--ELVNGVLYTGGW 129 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~-~~~l~~~l--~~~dgvIlpGG~ 129 (250)
+.+...+.+++.|..+.+...+.. .+.+.+.+ .++||||+.+..
T Consensus 28 ~~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~ 74 (275)
T cd06295 28 LLGGIADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQH 74 (275)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCC
Confidence 445567788889998877654432 22333333 479999997653
No 178
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.88 E-value=11 Score=34.59 Aligned_cols=81 Identities=19% Similarity=0.230 Sum_probs=46.3
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCCh---hhH-HHhcccCCEEEECCCCCCCccchH
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE---DVL-FEKLELVNGVLYTGGWAKDGLYYA 137 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~---~~l-~~~l~~~dgvIlpGG~~~~~~~~~ 137 (250)
.|++..+++. ....-+...+.++|++.|.++.+....... +.. ....+.+|.+|.-||-+ .
T Consensus 5 kv~lI~n~~~---------~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG---T--- 69 (305)
T PRK02645 5 QVIIAYKAGS---------SQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDG---T--- 69 (305)
T ss_pred EEEEEEeCCC---------HHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcH---H---
Confidence 4777777642 122234556788999999987765432111 000 11123578888888854 2
Q ss_pred HHHHHHHHHHHhCCCCCCceEEcccc
Q 025574 138 IVEKVFKKILEKNDAGDHFPLYAHCL 163 (250)
Q Consensus 138 ~~~~li~~~~~~~~~g~~~PILGICl 163 (250)
.-...+.....+ +|++||-.
T Consensus 70 -~l~~~~~~~~~~-----~pv~gin~ 89 (305)
T PRK02645 70 -VLAAARHLAPHD-----IPILSVNV 89 (305)
T ss_pred -HHHHHHHhccCC-----CCEEEEec
Confidence 223334333345 99999998
No 179
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=73.86 E-value=24 Score=30.10 Aligned_cols=46 Identities=13% Similarity=0.196 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHHcCCeEEEeecCCChhhHHHh-----cccCCEEEECCCC
Q 025574 84 SYIAASYVKFVESAGARVIPLIYNEPEDVLFEK-----LELVNGVLYTGGW 129 (250)
Q Consensus 84 ~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~-----l~~~dgvIlpGG~ 129 (250)
.-+...+.+++++.|..+.+.....+.+...+. -.++|||++.+..
T Consensus 15 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 65 (264)
T cd06274 15 ARIAKRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGSL 65 (264)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 344556777888899988877654443322221 2379999998764
No 180
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=73.59 E-value=21 Score=30.23 Aligned_cols=45 Identities=11% Similarity=0.039 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHcCCeEEEeecCCChhhH----HHhc-ccCCEEEECCC
Q 025574 84 SYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGG 128 (250)
Q Consensus 84 ~~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dgvIlpGG 128 (250)
.-+...+.+.+++.|..++......+++.. .... .++||+|+.+.
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~ 64 (259)
T cd01542 15 SRTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLAT 64 (259)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 445556777888899988776544333322 2222 47999999865
No 181
>PLN02727 NAD kinase
Probab=73.37 E-value=9 Score=40.30 Aligned_cols=83 Identities=14% Similarity=0.026 Sum_probs=48.3
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHc-CCeEEEeecCCCh---------------hhHHHhcccCCEEE
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIYNEPE---------------DVLFEKLELVNGVL 124 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~-G~~~v~i~~~~~~---------------~~l~~~l~~~dgvI 124 (250)
..|||+..+.+ ........+++||.+. |.++.+-+..... ....+..+.+|.||
T Consensus 679 rtVgIV~K~~~----------ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVI 748 (986)
T PLN02727 679 KTVLLLKKLGQ----------ELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVA 748 (986)
T ss_pred CEEEEEcCCcH----------HHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEE
Confidence 37899887753 1233455678899887 8776542211100 00112224689999
Q ss_pred ECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 125 YTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 125 lpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
.-||-+ .+. ...+.+...+ +|||||-+|.
T Consensus 749 vLGGDG---TlL----rAar~~~~~~-----iPILGINlGr 777 (986)
T PLN02727 749 CLGGDG---VIL----HASNLFRGAV-----PPVVSFNLGS 777 (986)
T ss_pred EECCcH---HHH----HHHHHhcCCC-----CCEEEEeCCC
Confidence 999955 222 2233333345 9999999885
No 182
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=73.36 E-value=9.2 Score=31.05 Aligned_cols=41 Identities=24% Similarity=0.308 Sum_probs=27.4
Q ss_pred CCCCCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEee
Q 025574 55 SKLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI 105 (250)
Q Consensus 55 ~~~~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~ 105 (250)
.....||+|||+|-..-.. +.-|.+ ..+||.++|++.+...
T Consensus 86 ~~~~~k~vIgvVTK~DLae---------d~dI~~-~~~~L~eaGa~~IF~~ 126 (148)
T COG4917 86 LDIGVKKVIGVVTKADLAE---------DADISL-VKRWLREAGAEPIFET 126 (148)
T ss_pred ccccccceEEEEecccccc---------hHhHHH-HHHHHHHcCCcceEEE
Confidence 3456789999999764321 223332 4579999999877654
No 183
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=72.67 E-value=12 Score=28.22 Aligned_cols=61 Identities=13% Similarity=0.223 Sum_probs=32.3
Q ss_pred HHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccch
Q 025574 90 YVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG 164 (250)
+.+.++. ...++++-+..+-.+......+.+|||+||...+ +.+++.+.+.+ +||+.+=..
T Consensus 34 ~~~~~~~--~~lvIt~gdR~di~~~a~~~~i~~iIltg~~~~~-------~~v~~la~~~~-----i~vi~t~~d 94 (105)
T PF07085_consen 34 FLEYLKP--GDLVITPGDREDIQLAAIEAGIACIILTGGLEPS-------EEVLELAKELG-----IPVISTPYD 94 (105)
T ss_dssp HHHCHHT--TEEEEEETT-HHHHHHHCCTTECEEEEETT-----------HHHHHHHHHHT------EEEE-SS-
T ss_pred HHhhcCC--CeEEEEeCCcHHHHHHHHHhCCCEEEEeCCCCCC-------HHHHHHHHHCC-----CEEEEECCC
Confidence 3344444 3455555443222222334567899999987632 36678887888 999876443
No 184
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=72.10 E-value=7 Score=28.84 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCC
Q 025574 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWA 130 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~ 130 (250)
.+.++|++.|++++.+.... .++.+|+++++|...
T Consensus 12 ~v~~~L~~~GyeVv~l~~~~-------~~~~~daiVvtG~~~ 46 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLENEQ-------DLQNVDAIVVTGQDT 46 (80)
T ss_pred HHHHHHHHCCCEEEecCCcc-------ccCCcCEEEEECCCc
Confidence 46679999999999875322 267899999999764
No 185
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=71.60 E-value=21 Score=28.20 Aligned_cols=43 Identities=26% Similarity=0.211 Sum_probs=28.6
Q ss_pred HHHHHHHcCCeEEEeec-CCChhhHH----HhcccCCEEEECCCCCCC
Q 025574 90 YVKFVESAGARVIPLIY-NEPEDVLF----EKLELVNGVLYTGGWAKD 132 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~~-~~~~~~l~----~~l~~~dgvIlpGG~~~~ 132 (250)
+.+++++.|+++..... ..+.+.+. +.++++|-||.+||-+..
T Consensus 24 l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~g 71 (133)
T cd00758 24 LEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGVG 71 (133)
T ss_pred HHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCCC
Confidence 44578999988765432 33444443 334568999999997753
No 186
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=71.32 E-value=30 Score=29.51 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHHHcCCeEEEeecCCChhhH----HHh-cccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceE
Q 025574 84 SYIAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (250)
Q Consensus 84 ~~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PI 158 (250)
+-+...+.+.+++.|..+++.....+.+.. ... -.++||||+..+.. . .....++.+.+++ +|+
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~--~----~~~~~i~~~~~~~-----ipv 83 (273)
T cd06305 15 QAYLAGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRA--E----VLKPWVKRALDAG-----IPV 83 (273)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh--h----hhHHHHHHHHHcC-----CCE
Confidence 334566778899999988776433333221 111 23699999976422 1 1123455555556 676
Q ss_pred Ecc
Q 025574 159 YAH 161 (250)
Q Consensus 159 LGI 161 (250)
..+
T Consensus 84 V~~ 86 (273)
T cd06305 84 VAF 86 (273)
T ss_pred EEe
Confidence 433
No 187
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=70.80 E-value=28 Score=29.61 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChhh----HHHhcc-cCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEc
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPEDV----LFEKLE-LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l~-~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILG 160 (250)
+...+.+.+++.|..++......+.+. +..... ++||+|+.+... .. ..++.+.+++ +|++.
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~-~~-------~~~~~l~~~~-----iPvv~ 83 (268)
T cd06273 17 VIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLDH-SP-------ALLDLLARRG-----VPYVA 83 (268)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC-CH-------HHHHHHHhCC-----CCEEE
Confidence 445677888899998877543333321 222233 589999976432 11 2344555556 78765
Q ss_pred c
Q 025574 161 H 161 (250)
Q Consensus 161 I 161 (250)
+
T Consensus 84 ~ 84 (268)
T cd06273 84 T 84 (268)
T ss_pred E
Confidence 4
No 188
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=70.14 E-value=36 Score=29.08 Aligned_cols=46 Identities=15% Similarity=0.066 Sum_probs=28.8
Q ss_pred chhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCC
Q 025574 83 ASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGG 128 (250)
Q Consensus 83 ~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG 128 (250)
..-+...+.+.+++.|..+++.....+.+. +.... .++||||+.+.
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06292 14 FPAFAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISS 64 (273)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 344556678889999999877654333221 12222 46899999764
No 189
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=69.32 E-value=26 Score=34.93 Aligned_cols=80 Identities=14% Similarity=0.235 Sum_probs=43.2
Q ss_pred CCCCCCCCCcEEEEeCCCCCC-CCCC-CCCCCcchhhHHHHHHHHHHcCCeEEEeec-CCChhhHHH----hcccCCEEE
Q 025574 52 VPDSKLNYRPVIGIVTHPGDG-ASGR-LNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLFE----KLELVNGVL 124 (250)
Q Consensus 52 ~~~~~~~~~PvIGI~~~~~~~-~~~~-~~~~~~~~~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~~----~l~~~dgvI 124 (250)
-..-....||.|||++.-..- ..+. +..+.-.......+..++++.|+++..... ..+.+.+.+ .++++|-||
T Consensus 171 i~~V~V~~rprV~IisTGdELv~pg~~l~~G~I~dsNs~~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~~~DlVI 250 (546)
T PRK14497 171 ISSVKVYEKPKIYLIATGDELVEPGNSLSPGKIYESNLHYLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAISVADVLI 250 (546)
T ss_pred CCEEeeccCCEEEEEEcCCcccCCCCCCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEE
Confidence 333445679999997543111 0111 111111111111233468999998765432 334555543 345689999
Q ss_pred ECCCCCC
Q 025574 125 YTGGWAK 131 (250)
Q Consensus 125 lpGG~~~ 131 (250)
++||.+.
T Consensus 251 ttGGtS~ 257 (546)
T PRK14497 251 LTGGTSA 257 (546)
T ss_pred EcCCccC
Confidence 9999875
No 190
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.05 E-value=12 Score=33.73 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHH--hCCCCCCceEEccc
Q 025574 85 YIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILE--KNDAGDHFPLYAHC 162 (250)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~--~~~~g~~~PILGIC 162 (250)
-++..+.+++++.|..+ + .+++|.+|.-||-+ .+. ...+.+.. .+ +|++||-
T Consensus 15 ~~~~~l~~~l~~~g~~~-----~---------~~~~Dlvi~iGGDG---T~L----~a~~~~~~~~~~-----iPilGIN 68 (265)
T PRK04885 15 RVASKLKKYLKDFGFIL-----D---------EKNPDIVISVGGDG---TLL----SAFHRYENQLDK-----VRFVGVH 68 (265)
T ss_pred HHHHHHHHHHHHcCCcc-----C---------CcCCCEEEEECCcH---HHH----HHHHHhcccCCC-----CeEEEEe
Confidence 35666778898888762 1 13579999999955 222 22233222 34 9999999
Q ss_pred chh
Q 025574 163 LGF 165 (250)
Q Consensus 163 lG~ 165 (250)
.|.
T Consensus 69 ~G~ 71 (265)
T PRK04885 69 TGH 71 (265)
T ss_pred CCC
Confidence 985
No 191
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=68.73 E-value=38 Score=28.68 Aligned_cols=44 Identities=20% Similarity=0.167 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCC
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~ 129 (250)
+...+.+++++.|..+.......+.+. ++... .++||||+.+..
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 65 (265)
T cd06299 17 LATAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHE 65 (265)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 445677888899998887765433332 12222 368999998754
No 192
>PRK06852 aldolase; Validated
Probab=68.67 E-value=39 Score=31.11 Aligned_cols=91 Identities=16% Similarity=0.220 Sum_probs=52.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecC-----CChhhHHHhcccC--CEEEECCCCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN-----EPEDVLFEKLELV--NGVLYTGGWAK 131 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~-----~~~~~l~~~l~~~--dgvIlpGG~~~ 131 (250)
.-|+|... .|.... ..+.....+|+. .++.-.++||+++-++|. .+.+...+..+.+ -.||+.||+..
T Consensus 167 GlPll~~~-yprG~~---i~~~~~~~~ia~-aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVviaGG~k~ 241 (304)
T PRK06852 167 GLIAVLWI-YPRGKA---VKDEKDPHLIAG-AAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVCAGGSST 241 (304)
T ss_pred CCcEEEEe-eccCcc---cCCCccHHHHHH-HHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEEeCCCCC
Confidence 45877743 332211 112233356653 456667889999999987 5556666656555 45899999885
Q ss_pred CccchHHHHHHHHHHHH-hCCCCCCceEEcccch
Q 025574 132 DGLYYAIVEKVFKKILE-KNDAGDHFPLYAHCLG 164 (250)
Q Consensus 132 ~~~~~~~~~~li~~~~~-~~~~g~~~PILGIClG 164 (250)
+. ...-+.++.+++ .+ --|||.|
T Consensus 242 ~~---~e~L~~v~~ai~~aG-------a~Gv~~G 265 (304)
T PRK06852 242 DP---EEFLKQLYEQIHISG-------ASGNATG 265 (304)
T ss_pred CH---HHHHHHHHHHHHHcC-------Cceeeec
Confidence 22 112234455545 44 4567665
No 193
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=68.59 E-value=33 Score=29.50 Aligned_cols=46 Identities=11% Similarity=-0.035 Sum_probs=28.5
Q ss_pred chhhHHHHHHHHHHcCCeEEEeecCCChhhH----HHhc-ccCCEEEECCC
Q 025574 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGG 128 (250)
Q Consensus 83 ~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dgvIlpGG 128 (250)
..-+...+.+.+++.|..++......+.+.. .... .++||||+.+.
T Consensus 14 ~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~ 64 (282)
T cd06318 14 FAALTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPV 64 (282)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3445566778889999988766543333221 2111 36899999753
No 194
>PRK03094 hypothetical protein; Provisional
Probab=68.46 E-value=9.9 Score=28.06 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=26.3
Q ss_pred HHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCC
Q 025574 90 YVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWA 130 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~ 130 (250)
+.++|++.|.+|+.+....+ .+.+|+++++|-..
T Consensus 13 i~~~L~~~GYeVv~l~~~~~-------~~~~Da~VitG~d~ 46 (80)
T PRK03094 13 VQQALKQKGYEVVQLRSEQD-------AQGCDCCVVTGQDS 46 (80)
T ss_pred HHHHHHHCCCEEEecCcccc-------cCCcCEEEEeCCCc
Confidence 56799999999998753221 56899999999654
No 195
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=68.33 E-value=30 Score=29.31 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCC
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~ 129 (250)
+...+.+.+++.|..+.......+.+. ++... .++||||+.+..
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 65 (268)
T cd01575 17 VLQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLE 65 (268)
T ss_pred HHHHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCC
Confidence 345677888999998877655433222 22222 369999998753
No 196
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=68.33 E-value=15 Score=28.95 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=26.8
Q ss_pred HHHHHHHcCCeEEEeec-CCChhhHHH----hcccCCEEEECCCCCC
Q 025574 90 YVKFVESAGARVIPLIY-NEPEDVLFE----KLELVNGVLYTGGWAK 131 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~~-~~~~~~l~~----~l~~~dgvIlpGG~~~ 131 (250)
+.+++++.|+++..... ..+.+.+.+ .++.+|-||.+||-+.
T Consensus 23 l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g~ 69 (135)
T smart00852 23 LAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTGP 69 (135)
T ss_pred HHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCCC
Confidence 34589999987653321 234444443 3356899999999764
No 197
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=67.88 E-value=37 Score=28.31 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=39.2
Q ss_pred chhhHHHHHHHHHHcCCeEEEeecCCChhhH----HHhc-ccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCce
Q 025574 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFP 157 (250)
Q Consensus 83 ~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~P 157 (250)
...+.....+++++.|..++......+.+.. .... .++|+|++.+..... . . ++.+.+.+ +|
T Consensus 14 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~------~-~-~~~~~~~~-----ip 80 (264)
T cd06267 14 FAELLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDD------E-L-LEELAALG-----IP 80 (264)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcch------H-H-HHHHHHcC-----CC
Confidence 3445566777888889888877665443222 2222 368999998765411 0 1 45555556 77
Q ss_pred EEcc
Q 025574 158 LYAH 161 (250)
Q Consensus 158 ILGI 161 (250)
+..+
T Consensus 81 vv~~ 84 (264)
T cd06267 81 VVLV 84 (264)
T ss_pred EEEe
Confidence 6554
No 198
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=67.83 E-value=39 Score=28.63 Aligned_cols=46 Identities=17% Similarity=0.132 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHHcCCeEEEeecCCChh----hHHHhc--ccCCEEEECCCC
Q 025574 84 SYIAASYVKFVESAGARVIPLIYNEPED----VLFEKL--ELVNGVLYTGGW 129 (250)
Q Consensus 84 ~~i~~s~v~~le~~G~~~v~i~~~~~~~----~l~~~l--~~~dgvIlpGG~ 129 (250)
.-+...+.+++++.|..+.....+...+ .+.+.+ .++||||+.+..
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 66 (270)
T cd01545 15 SEIQLGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPPL 66 (270)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3445567778889999888776553222 222222 468999998663
No 199
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=67.59 E-value=59 Score=29.55 Aligned_cols=62 Identities=8% Similarity=-0.138 Sum_probs=35.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecC--CChhhHHHhc-----ccCCEEEECCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN--EPEDVLFEKL-----ELVNGVLYTGG 128 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~--~~~~~l~~~l-----~~~dgvIlpGG 128 (250)
....||++..... ......+...+.+.+++.|..++..... .+.+...+.+ .++||||+.+.
T Consensus 45 ~t~~Igvv~p~~~--------~~f~~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~ 113 (343)
T PRK10936 45 KAWKLCALYPHLK--------DSYWLSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAV 113 (343)
T ss_pred CCeEEEEEecCCC--------chHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 3568998874321 1222334556777888899988776432 1222221112 46899999754
No 200
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=67.42 E-value=40 Score=28.56 Aligned_cols=92 Identities=14% Similarity=0.190 Sum_probs=50.8
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC-C-------------hhhHHHhcccCCEEEECC
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-P-------------EDVLFEKLELVNGVLYTG 127 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~-~-------------~~~l~~~l~~~dgvIlpG 127 (250)
+++|.+.|..+ ....-+.+.+.+.+++.|+++..+.... + .+.+.+.++.+|+||+.
T Consensus 3 Il~I~GSpr~~--------S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~- 73 (191)
T PRK10569 3 VITLAGSPRFP--------SRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVA- 73 (191)
T ss_pred EEEEEcCCCCC--------ChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEE-
Confidence 77888877642 2344466667778888899887764421 1 11233556788998773
Q ss_pred CCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccch
Q 025574 128 GWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (250)
Q Consensus 128 G~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG 164 (250)
-|.+...+....+.+++++-.. .-.++|++=|+-|
T Consensus 74 tP~Y~~s~pg~LKn~iD~l~~~--~l~~K~v~iiat~ 108 (191)
T PRK10569 74 TPVYKASFSGALKTLLDLLPER--ALEHKVVLPLATG 108 (191)
T ss_pred CCccCCCCCHHHHHHHHhCChh--hhCCCEEEEEEec
Confidence 3333333444445555444211 1112787755543
No 201
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=67.36 E-value=48 Score=30.05 Aligned_cols=84 Identities=18% Similarity=0.101 Sum_probs=49.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhH----HHhc-ccCCEEEECCCCCCCc
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGWAKDG 133 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dgvIlpGG~~~~~ 133 (250)
.++.||++....+ ....+-+...+.+.+++.|..+.+.....+.+.. ...+ .++||||+.+... .
T Consensus 24 ~~~~Ig~i~~~~~--------~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~--~ 93 (330)
T PRK10355 24 KEVKIGMAIDDLR--------LERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNG--Q 93 (330)
T ss_pred CCceEEEEecCCC--------chHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh--h
Confidence 4789999884321 1223335567888899999998876554333322 2222 3799999986422 0
Q ss_pred cchHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 134 LYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 134 ~~~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
.....++.+.+++ +|+.-+
T Consensus 94 ----~~~~~l~~~~~~~-----iPvV~i 112 (330)
T PRK10355 94 ----VLSNVIKEAKQEG-----IKVLAY 112 (330)
T ss_pred ----hHHHHHHHHHHCC-----CeEEEE
Confidence 1123455555666 787755
No 202
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=67.01 E-value=70 Score=26.22 Aligned_cols=56 Identities=16% Similarity=0.064 Sum_probs=41.0
Q ss_pred HHHHHcCCeEEEeecCCChhhHHHhc--ccCCEEEECCCCCCCccchHHHHHHHHHHHHhC
Q 025574 92 KFVESAGARVIPLIYNEPEDVLFEKL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (250)
Q Consensus 92 ~~le~~G~~~v~i~~~~~~~~l~~~l--~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~ 150 (250)
+.|+.+|++|+......++++.-... +.+|.|.+++=.. .+......+++.+.+++
T Consensus 34 ~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g---~h~~l~~~lve~lre~G 91 (143)
T COG2185 34 RALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDG---GHLTLVPGLVEALREAG 91 (143)
T ss_pred HHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccc---hHHHHHHHHHHHHHHhC
Confidence 58999999999888777777665444 5689999886433 34445668888887776
No 203
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=66.82 E-value=36 Score=28.79 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHcCCeEEEeecCCChhhH----HHhc-ccCCEEEECCCC
Q 025574 84 SYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 84 ~~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dgvIlpGG~ 129 (250)
.-+...+.+++++.|..++......+.+.. .... .++||||+.+..
T Consensus 15 ~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~ 65 (267)
T cd06283 15 SLVLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTG 65 (267)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCCC
Confidence 334556778888899888766544333221 2222 368999997753
No 204
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.81 E-value=18 Score=32.70 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=42.7
Q ss_pred EEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhH-----H-HhcccCCEEEECCCCCCCccch
Q 025574 63 IGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL-----F-EKLELVNGVLYTGGWAKDGLYY 136 (250)
Q Consensus 63 IGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l-----~-~~l~~~dgvIlpGG~~~~~~~~ 136 (250)
|||..++... ...-+...+.+|+ +.|..++.-.... +.+ . ... .+|.+|.-||-+
T Consensus 3 i~iv~~~~~~---------~~~~~~~~i~~~l-~~g~~~~~~~~~~--~~~~~~~~~~~~~-~~D~vi~lGGDG------ 63 (271)
T PRK01185 3 VAFVIRKDCK---------RCIKIAKSIIELL-PPDWEIIYEMEAA--KALGMDGLDIEEI-NADVIITIGGDG------ 63 (271)
T ss_pred EEEEecCCCH---------HHHHHHHHHHHHH-hcCCEEEEechhh--hhcCcccCccccc-CCCEEEEEcCcH------
Confidence 8888877431 1222344567788 4687765432110 110 0 112 579999999955
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEcccch
Q 025574 137 AIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (250)
Q Consensus 137 ~~~~~li~~~~~~~~~g~~~PILGIClG 164 (250)
.+++.+.... .||+||-.|
T Consensus 64 ----T~L~a~~~~~-----~PilGIN~G 82 (271)
T PRK01185 64 ----TILRTLQRAK-----GPILGINMG 82 (271)
T ss_pred ----HHHHHHHHcC-----CCEEEEECC
Confidence 2344443344 699999998
No 205
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=66.78 E-value=24 Score=32.51 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=41.6
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeec-CCChhhHHH----hccc-CCEEEECCCCC
Q 025574 57 LNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLFE----KLEL-VNGVLYTGGWA 130 (250)
Q Consensus 57 ~~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~~----~l~~-~dgvIlpGG~~ 130 (250)
...+|.+||++.-..-..|+. . ++ ....+..++++.|++++.... ..+.+.+.+ .+++ +|-||++||-+
T Consensus 156 v~r~~rv~II~TG~Ev~~G~i-~---D~-~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGts 230 (312)
T cd03522 156 PFRPLRVGLIVTGSEVYGGRI-E---DK-FGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGAS 230 (312)
T ss_pred ecCCCEEEEEEcCCcCCCCcE-E---Eh-HHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcc
Confidence 356799999875322222221 1 11 122344579999998764432 234444433 3344 89999999987
Q ss_pred CCc
Q 025574 131 KDG 133 (250)
Q Consensus 131 ~~~ 133 (250)
.++
T Consensus 231 vg~ 233 (312)
T cd03522 231 VDP 233 (312)
T ss_pred cCC
Confidence 654
No 206
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=66.58 E-value=36 Score=28.81 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCC
Q 025574 84 SYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 84 ~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~ 129 (250)
.-+.....+++++.|..+.+.....+.+. +...+ .++||||+.+..
T Consensus 15 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 65 (268)
T cd06298 15 AELARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGK 65 (268)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCCC
Confidence 33555677888889998877654433332 22222 379999998643
No 207
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=65.62 E-value=29 Score=34.88 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=41.2
Q ss_pred CCCCCcEEEEeCCCCCC-CCCCC-CCCCcchhhHHHHHHHHHHcCCeEEEeec-CCChhhHHH----hcccCCEEEECCC
Q 025574 56 KLNYRPVIGIVTHPGDG-ASGRL-NNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLFE----KLELVNGVLYTGG 128 (250)
Q Consensus 56 ~~~~~PvIGI~~~~~~~-~~~~~-~~~~~~~~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~~----~l~~~dgvIlpGG 128 (250)
....||.|||++.-..- ..|.. ..+.-.......+..++++.|+++..... ..+.+.+.+ .++.+|-||.+||
T Consensus 363 ~V~~~prV~IistGdEl~~~g~~~~~g~i~dsn~~~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIIttGG 442 (597)
T PRK14491 363 PVFRRPKVAVFSTGDEVQAPGETLKPNCIYDSNRFTIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAAQADVVISSGG 442 (597)
T ss_pred EeccCCEEEEEecCCeeccCCCcCCCCcEEeCCHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCC
Confidence 34678999998543211 11110 01111111112234578999998764432 334444433 3456899999999
Q ss_pred CCCC
Q 025574 129 WAKD 132 (250)
Q Consensus 129 ~~~~ 132 (250)
-+..
T Consensus 443 ~s~G 446 (597)
T PRK14491 443 VSVG 446 (597)
T ss_pred ccCC
Confidence 8753
No 208
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=64.08 E-value=66 Score=28.15 Aligned_cols=62 Identities=10% Similarity=-0.011 Sum_probs=36.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHH----Hhc-ccCCEEEECCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLF----EKL-ELVNGVLYTGG 128 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~----~~l-~~~dgvIlpGG 128 (250)
.+..||++..... .....-+...+.+.+++.|..++......+.+... ... .++||+|+.+.
T Consensus 25 ~~~~I~vi~~~~~--------~~f~~~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~ 91 (295)
T PRK10653 25 AKDTIALVVSTLN--------NPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 91 (295)
T ss_pred cCCeEEEEecCCC--------ChHHHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4568998763211 12233455567788889999887764433333221 212 36899999754
No 209
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=63.83 E-value=29 Score=28.87 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=27.2
Q ss_pred HHHHHHHcCCeEEEeec-CCChhhHH----HhcccCCEEEECCCCCC
Q 025574 90 YVKFVESAGARVIPLIY-NEPEDVLF----EKLELVNGVLYTGGWAK 131 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~~-~~~~~~l~----~~l~~~dgvIlpGG~~~ 131 (250)
+.++|++.|+++..+.. ..+.+.+. ..++.+|-||.+||-+.
T Consensus 24 l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~ 70 (170)
T cd00885 24 LAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGP 70 (170)
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 34589999998764332 23344333 34457899999999764
No 210
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=63.63 E-value=40 Score=25.02 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCeEEEe--ecC--CChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEccc-
Q 025574 88 ASYVKFVESAGARVIPL--IYN--EPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC- 162 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i--~~~--~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIC- 162 (250)
..|.+.+++.|+..+.. .-. .....++..+.++|.||+.=+.. +... ...+-+.+.+.+ +|+.=.=
T Consensus 13 ~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~v-sH~~---~~~vk~~akk~~-----ip~~~~~~ 83 (97)
T PF10087_consen 13 RRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYV-SHNA---MWKVKKAAKKYG-----IPIIYSRS 83 (97)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCc-ChHH---HHHHHHHHHHcC-----CcEEEECC
Confidence 45888999999988777 111 12224777788999998875543 2222 224456666667 9987332
Q ss_pred chhHHHH
Q 025574 163 LGFELLT 169 (250)
Q Consensus 163 lG~QlL~ 169 (250)
.|..-|.
T Consensus 84 ~~~~~l~ 90 (97)
T PF10087_consen 84 RGVSSLE 90 (97)
T ss_pred CCHHHHH
Confidence 2444443
No 211
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=63.48 E-value=40 Score=28.47 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChhhH----HHhc-ccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEc
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILG 160 (250)
+...+.+.+++.|..++......+.+.. .... .++||||+.++..... ..++.+.+.+ +|++-
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~-------~~~~~~~~~~-----ipvV~ 84 (266)
T cd06282 17 CVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAATS-------PALDLLDAER-----VPYVL 84 (266)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCch-------HHHHHHhhCC-----CCEEE
Confidence 4456777888899998876543332221 1211 3699999965532111 2345555556 77654
Q ss_pred c
Q 025574 161 H 161 (250)
Q Consensus 161 I 161 (250)
+
T Consensus 85 ~ 85 (266)
T cd06282 85 A 85 (266)
T ss_pred E
Confidence 4
No 212
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.17 E-value=27 Score=31.42 Aligned_cols=69 Identities=12% Similarity=0.034 Sum_probs=43.1
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHH
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEK 141 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~ 141 (250)
.|||..++.. ...-+...+.+|+++.|..++.- .+++|.+|.-||-+ .+. .
T Consensus 4 ~i~iv~~~~~----------~a~~~~~~l~~~l~~~g~~~~~~------------~~~~D~vi~lGGDG---T~L----~ 54 (264)
T PRK03501 4 NLFFFYKRDK----------ELVEKVKPLKKIAEEYGFTVVDH------------PKNANIIVSIGGDG---TFL----Q 54 (264)
T ss_pred EEEEEECCCH----------HHHHHHHHHHHHHHHCCCEEEcC------------CCCccEEEEECCcH---HHH----H
Confidence 6888876542 22334556778999999876531 13579999999855 222 2
Q ss_pred HHHHHHHh-CCCCCCceEEcccc-h
Q 025574 142 VFKKILEK-NDAGDHFPLYAHCL-G 164 (250)
Q Consensus 142 li~~~~~~-~~~g~~~PILGICl-G 164 (250)
..+.+... + .|++||-. |
T Consensus 55 a~~~~~~~~~-----~pilgIn~~G 74 (264)
T PRK03501 55 AVRKTGFRED-----CLYAGISTKD 74 (264)
T ss_pred HHHHhcccCC-----CeEEeEecCC
Confidence 22222111 4 89999999 6
No 213
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=63.00 E-value=38 Score=29.00 Aligned_cols=46 Identities=9% Similarity=-0.083 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHcCCeEEEeecCCChhhH----HHhc-ccCCEEEECCCC
Q 025574 84 SYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 84 ~~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dgvIlpGG~ 129 (250)
.-+..+..+++++.|..++......+.+.. ...+ +++||||+.+..
T Consensus 15 ~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 65 (273)
T cd06309 15 TAETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVV 65 (273)
T ss_pred HHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 335567788888899988876544333222 1222 369999997643
No 214
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=62.41 E-value=45 Score=29.12 Aligned_cols=66 Identities=14% Similarity=0.100 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHcCCeEEEeecCCChhhHH----Hhc-ccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEE
Q 025574 85 YIAASYVKFVESAGARVIPLIYNEPEDVLF----EKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~~~~~l~----~~l-~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PIL 159 (250)
-+...+.+.+++.|..+.+.....+.+... ..+ .++||||+.+... + ....+++.+.+.+ +||.
T Consensus 16 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~-~-----~~~~~l~~l~~~~-----ipvV 84 (288)
T cd01538 16 RDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDG-E-----ALASAVEKAADAG-----IPVI 84 (288)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh-h-----hHHHHHHHHHHCC-----CCEE
Confidence 345567778888999988776543333221 112 3699999976422 1 1123455555556 7775
Q ss_pred cc
Q 025574 160 AH 161 (250)
Q Consensus 160 GI 161 (250)
.+
T Consensus 85 ~~ 86 (288)
T cd01538 85 AY 86 (288)
T ss_pred EE
Confidence 44
No 215
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=61.20 E-value=53 Score=27.84 Aligned_cols=71 Identities=10% Similarity=0.026 Sum_probs=45.5
Q ss_pred chhhHHHHHHHHHHcCCeEEEe-ecCCChhhHHHh-----cccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCc
Q 025574 83 ASYIAASYVKFVESAGARVIPL-IYNEPEDVLFEK-----LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHF 156 (250)
Q Consensus 83 ~~~i~~s~v~~le~~G~~~v~i-~~~~~~~~l~~~-----l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~ 156 (250)
...+.+...++.++.|..+..+ +...+.+...+. -+++||||+...... . ...+++++.+++ +
T Consensus 13 ~~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~--~----~~~~l~~~~~~g-----I 81 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPD--S----LAPFLEKAKAAG-----I 81 (257)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTT--T----THHHHHHHHHTT-----S
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHH--H----HHHHHHHHhhcC-----c
Confidence 3335566778889999998885 544443322221 246899998866441 1 125678888888 9
Q ss_pred eEEcccch
Q 025574 157 PLYAHCLG 164 (250)
Q Consensus 157 PILGIClG 164 (250)
||.-+=.+
T Consensus 82 pvv~~d~~ 89 (257)
T PF13407_consen 82 PVVTVDSD 89 (257)
T ss_dssp EEEEESST
T ss_pred eEEEEecc
Confidence 99876544
No 216
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=61.17 E-value=55 Score=27.96 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCC
Q 025574 84 SYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGG 128 (250)
Q Consensus 84 ~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG 128 (250)
.-+.....+.+++.|..++......+.+. +...+ .++||+|+.+.
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (273)
T cd01541 15 PSIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPT 64 (273)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 34455667788889998877654333321 12222 46999998765
No 217
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=61.07 E-value=21 Score=33.15 Aligned_cols=49 Identities=12% Similarity=0.153 Sum_probs=32.4
Q ss_pred ccCCEEEECCCCCCCc-cchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 118 ELVNGVLYTGGWAKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 118 ~~~dgvIlpGG~~~~~-~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
..+|-|++.||..... .-......+++.+..++ .++-|||-|.-+|+.+
T Consensus 75 ~~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G-----~~l~gictGaf~LA~a 124 (328)
T COG4977 75 PPIDILPVCGGLGPERPVNAPALLAWLRRAARRG-----ARLGGLCTGAFVLAEA 124 (328)
T ss_pred CcceEEEEecCCCcccccchHHHHHHHHHHHhcC-----CeEEEehHhHHHHHHh
Confidence 3477777766655221 11122335666666666 9999999999999986
No 218
>PRK05569 flavodoxin; Provisional
Probab=60.91 E-value=70 Score=24.95 Aligned_cols=78 Identities=12% Similarity=0.090 Sum_probs=42.9
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccch--HHHHHHHHHHHHhCCCCCCceE
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY--AIVEKVFKKILEKNDAGDHFPL 158 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~--~~~~~li~~~~~~~~~g~~~PI 158 (250)
+....++..+.+-+++.|+++.+....... .. .+..+|+|+|- .|.....+. .....+++......-++...=+
T Consensus 13 GnT~~iA~~i~~~~~~~g~~v~~~~~~~~~--~~-~~~~~d~iilg-sPty~~~~~~~~~~~~~~~~l~~~~~~~K~v~~ 88 (141)
T PRK05569 13 GNVEVLANTIADGAKEAGAEVTIKHVADAK--VE-DVLEADAVAFG-SPSMDNNNIEQEEMAPFLDQFKLTPNENKKCIL 88 (141)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEECCcCC--HH-HHhhCCEEEEE-CCCcCCCcCChHHHHHHHHHhhccCcCCCEEEE
Confidence 457788888888888899887766654321 11 35678988773 332211111 2234555554322223433455
Q ss_pred Eccc
Q 025574 159 YAHC 162 (250)
Q Consensus 159 LGIC 162 (250)
+|.|
T Consensus 89 f~t~ 92 (141)
T PRK05569 89 FGSY 92 (141)
T ss_pred EeCC
Confidence 6665
No 219
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=60.80 E-value=55 Score=28.35 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChhhHHHh-cccCCEEEECCCC
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPEDVLFEK-LELVNGVLYTGGW 129 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~-l~~~dgvIlpGG~ 129 (250)
+...+.+.+++.|..+.........+.+... -.++||+|+.+..
T Consensus 22 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~ 66 (283)
T cd06279 22 FLAGVAEVLDAAGVNLLLLPASSEDSDSALVVSALVDGFIVYGVP 66 (283)
T ss_pred HHHHHHHHHHHCCCEEEEecCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 4455677888899988876543212222221 2469999998753
No 220
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=60.58 E-value=61 Score=27.94 Aligned_cols=66 Identities=11% Similarity=-0.095 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHcCCeEEEeecCCChhhH----HHhc-ccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEE
Q 025574 85 YIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PIL 159 (250)
-+.+.+.+.+++.|..+...... +.+.. .... .++||||+.+... . ....+++.+.+.+ +|+.
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~~~---~---~~~~~~~~~~~~~-----iPvV 83 (289)
T cd01540 16 TEWKFAKKAAKEKGFTVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVPDV---K---LGPAIVAKAKAYN-----MKVV 83 (289)
T ss_pred HHHHHHHHHHHHcCCEEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccCch---h---hhHHHHHHHHhCC-----CeEE
Confidence 34556778888999988766443 22221 1122 3689999986421 1 1224566666666 7776
Q ss_pred ccc
Q 025574 160 AHC 162 (250)
Q Consensus 160 GIC 162 (250)
.+.
T Consensus 84 ~~~ 86 (289)
T cd01540 84 AVD 86 (289)
T ss_pred Eec
Confidence 543
No 221
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=60.41 E-value=71 Score=28.45 Aligned_cols=63 Identities=24% Similarity=0.249 Sum_probs=37.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHH----Hhc-ccCCEEEECCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLF----EKL-ELVNGVLYTGGW 129 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~----~~l-~~~dgvIlpGG~ 129 (250)
....||++..... ......+...+.+++++.|..+.+.....+.+... ... .++||||+.+..
T Consensus 63 ~~~~Igvv~~~~~--------~~~~~~i~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 130 (342)
T PRK10014 63 QSGVIGLIVRDLS--------APFYAELTAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAA 130 (342)
T ss_pred CCCEEEEEeCCCc--------cchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 4468999874321 12233345567778888998777655433332221 222 368999998754
No 222
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.19 E-value=52 Score=27.96 Aligned_cols=44 Identities=11% Similarity=0.038 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHcCCeEEEeecCCChhhH----HHh-cccCCEEEECCC
Q 025574 85 YIAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGG 128 (250)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dgvIlpGG 128 (250)
-+...+.+.+++.|.++.+.....+.+.. ... -.++||+|+.+.
T Consensus 16 ~~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06322 16 ELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPV 64 (267)
T ss_pred HHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 34566777888899988765543332211 111 246999999754
No 223
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=59.86 E-value=24 Score=31.79 Aligned_cols=80 Identities=21% Similarity=0.255 Sum_probs=44.6
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHH-------HhcccCCEEEECCCCCCCcc
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLF-------EKLELVNGVLYTGGWAKDGL 134 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~-------~~l~~~dgvIlpGG~~~~~~ 134 (250)
.|||..++.. .....++..+..++...+..+....- ..+.+. ..-+.+|.++.-||.+
T Consensus 2 ~~~i~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~d~ivvlGGDG---- 66 (281)
T COG0061 2 KVGIVGRPDK---------PEALKIAKRLYEFLKFKGVTVEVDQE--LAEELKDFADYVDDDEEKADLIVVLGGDG---- 66 (281)
T ss_pred eEEEEecCCc---------HHHHHHHHHHHHHHHhcCceEEEech--hhhhcccccccccccccCceEEEEeCCcH----
Confidence 4788887753 12344566677888887776654321 111111 0013466666666644
Q ss_pred chHHHHHHHHHHHHhCCCCCCceEEcccch
Q 025574 135 YYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (250)
Q Consensus 135 ~~~~~~~li~~~~~~~~~g~~~PILGIClG 164 (250)
+.....+.....+ +||+||-+|
T Consensus 67 ---tlL~~~~~~~~~~-----~pilgin~G 88 (281)
T COG0061 67 ---TLLRAARLLARLD-----IPVLGINLG 88 (281)
T ss_pred ---HHHHHHHHhccCC-----CCEEEEeCC
Confidence 2223344444444 999999999
No 224
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=59.68 E-value=74 Score=24.45 Aligned_cols=79 Identities=20% Similarity=0.160 Sum_probs=42.5
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccch-HHHHHHHHHHHHhCCCCCCceEE
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY-AIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~-~~~~~li~~~~~~~~~g~~~PIL 159 (250)
+....++..+.+.++..|..+.++...... . ..+..+|+|||--.--...... .....+++.....+-+|...=++
T Consensus 10 GnT~~~A~~i~~~~~~~g~~v~~~~~~~~~--~-~~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~~~gk~~~vf 86 (140)
T TIGR01753 10 GNTEEMANIIAEGLKEAGAEVDLLEVADAD--A-EDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDIDLGGKKVALF 86 (140)
T ss_pred cHHHHHHHHHHHHHHhcCCeEEEEEcccCC--H-HHHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCCCCCCEEEEE
Confidence 456677888888888889888877654321 1 1245688877643221111111 23335555543322234445566
Q ss_pred ccc
Q 025574 160 AHC 162 (250)
Q Consensus 160 GIC 162 (250)
|.|
T Consensus 87 gt~ 89 (140)
T TIGR01753 87 GSG 89 (140)
T ss_pred ecC
Confidence 655
No 225
>PRK12493 magnesium chelatase subunit H; Provisional
Probab=59.57 E-value=31 Score=37.94 Aligned_cols=100 Identities=20% Similarity=0.146 Sum_probs=54.9
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC-C-hhhHHHhc--------ccCCEEEE-CCC
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-P-EDVLFEKL--------ELVNGVLY-TGG 128 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~-~-~~~l~~~l--------~~~dgvIl-pGG 128 (250)
+|+|||+.....-- .....++. .+++.||+.|..|+++-... + ...+.+.+ ..+|+||- +|.
T Consensus 253 ~p~Vgil~~r~~~~------~~d~~~~d-alI~~LE~~G~~vipvf~~gl~~~~~v~~~~~~~~~~~~~~vDaiI~~t~F 325 (1310)
T PRK12493 253 APTVGLLLQRTHLL------TGNDAHYV-ALIQELEARGARVIPAYAGGLDFRKPVEAFFYDPGNPDTPLVDLVVSLTGF 325 (1310)
T ss_pred CCEEEEEEchhhhh------cCCcHHHH-HHHHHHHHCCCeEEEEEecCcccchHHHHHHHhhcccCCCCccEEEEcCcc
Confidence 89999998664321 13345554 58899999999998875431 1 11121112 24788884 332
Q ss_pred CCCC-ccchHHHHHHHHHHHHhCCCCCCceEEc-ccchhHHHHHHh
Q 025574 129 WAKD-GLYYAIVEKVFKKILEKNDAGDHFPLYA-HCLGFELLTMII 172 (250)
Q Consensus 129 ~~~~-~~~~~~~~~li~~~~~~~~~g~~~PILG-IClG~QlL~~~~ 172 (250)
.-.. |... ..+.-.+...+.| +|++- +-+-+|-+....
T Consensus 326 ~l~ggpa~~-~~~~a~~~L~~ln-----VPvl~~~~l~~qt~~~W~ 365 (1310)
T PRK12493 326 ALVGGPARQ-DHPKAIEALKKLN-----RPYMVALPLVFQTTEEWE 365 (1310)
T ss_pred cccCCcccC-cchhhHHHHHHCC-----CCEEEEEecCCCCHHHHH
Confidence 1111 1111 0111223334557 99985 446667777764
No 226
>PLN03069 magnesiumprotoporphyrin-IX chelatase subunit H; Provisional
Probab=59.25 E-value=37 Score=37.06 Aligned_cols=102 Identities=18% Similarity=0.192 Sum_probs=56.0
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC-C-hhhHHH-hc------ccCCEEEE-CC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-P-EDVLFE-KL------ELVNGVLY-TG 127 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~-~-~~~l~~-~l------~~~dgvIl-pG 127 (250)
..+|+|||+.....-- .....++. .+++.||+.|..|+++-... + ...+.+ .+ ..+|.||- +|
T Consensus 264 ~~~p~Vgil~~r~~~~------~~~~~~id-alI~~LE~~G~~vipvf~~gl~~~~~~~~~~~~~~~~~~~vDaiIn~tg 336 (1220)
T PLN03069 264 KDAPVVGLVLQRSHIV------TGDDGHYV-AVVMELEARGAKVVPIFAGGLDFSGPVERFFYDPITKKPIVDSVVSLTG 336 (1220)
T ss_pred CCCCEEEEEechhhhh------cCCcHHHH-HHHHHHHHCCCeEEEEEecCccccchHHHHHHhhhcCCCCccEEEECCc
Confidence 3589999998654321 12344554 48899999999998875432 1 111111 11 24788884 33
Q ss_pred CCCC-CccchHHHHHHHHHHHHhCCCCCCceEEc-ccchhHHHHHHh
Q 025574 128 GWAK-DGLYYAIVEKVFKKILEKNDAGDHFPLYA-HCLGFELLTMII 172 (250)
Q Consensus 128 G~~~-~~~~~~~~~~li~~~~~~~~~g~~~PILG-IClG~QlL~~~~ 172 (250)
..-. .|.... .+.-.+...+.| +|++- +-+-+|-+....
T Consensus 337 F~L~ggpa~~~-~~~a~~~L~~ln-----VPvl~~~~l~~qt~e~W~ 377 (1220)
T PLN03069 337 FALVGGPARQD-HPKAIEALKKLD-----VPYLVALPLVFQTTEEWL 377 (1220)
T ss_pred ccccCCccccc-chhhHHHHHHCC-----CCEEEEEecCCCCHHHHH
Confidence 2211 111111 111233334567 99986 446678887764
No 227
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=59.17 E-value=57 Score=27.05 Aligned_cols=47 Identities=11% Similarity=0.078 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHcCCeEEEeecCCChhhH----HHhc-ccCCEEEECCCCC
Q 025574 84 SYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGWA 130 (250)
Q Consensus 84 ~~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dgvIlpGG~~ 130 (250)
..+...+.+++++.|...+..+...+.+.. ...+ .++|++|+.+...
T Consensus 15 ~~~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~ 66 (264)
T cd01537 15 AQVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDL 66 (264)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 334556778888899988777655443222 2222 3689999987543
No 228
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=58.93 E-value=83 Score=28.05 Aligned_cols=63 Identities=17% Similarity=0.065 Sum_probs=36.9
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~ 129 (250)
....||++..... ......+...+.+.+++.|..+.......+.+. ++... .++||||+.++.
T Consensus 58 ~~~~i~vi~~~~~--------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 125 (341)
T PRK10703 58 HTKSIGLLATSSE--------APYFAEIIEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSE 125 (341)
T ss_pred CCCeEEEEeCCCC--------CchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 3458998864321 122334455677788889998876653333322 22222 368999998753
No 229
>PRK06756 flavodoxin; Provisional
Probab=58.79 E-value=89 Score=24.70 Aligned_cols=44 Identities=11% Similarity=0.173 Sum_probs=30.1
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEEC
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYT 126 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlp 126 (250)
+....++..+.+.+++.|..+.+......+. . ..+.++|+|+|-
T Consensus 13 GnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~-~-~~~~~~d~vi~g 56 (148)
T PRK06756 13 GNTEEMADHIAGVIRETENEIEVIDIMDSPE-A-SILEQYDGIILG 56 (148)
T ss_pred chHHHHHHHHHHHHhhcCCeEEEeehhccCC-H-HHHhcCCeEEEE
Confidence 4567888888889998998877665433211 1 236678988775
No 230
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=58.65 E-value=83 Score=26.81 Aligned_cols=68 Identities=9% Similarity=0.085 Sum_probs=37.0
Q ss_pred chhhHHHHHHHHHHc---CC--eEEEeecCCChhhH----HHh-cccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCC
Q 025574 83 ASYIAASYVKFVESA---GA--RVIPLIYNEPEDVL----FEK-LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDA 152 (250)
Q Consensus 83 ~~~i~~s~v~~le~~---G~--~~v~i~~~~~~~~l----~~~-l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~ 152 (250)
.+-+...+.+.+++. |. ++++.....+.+.. ... -.++||||+.+... . .....++.+.+++
T Consensus 14 ~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~--~----~~~~~l~~~~~~~-- 85 (272)
T cd06300 14 RAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASP--T----ALNPVIEEACEAG-- 85 (272)
T ss_pred HHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh--h----hhHHHHHHHHHCC--
Confidence 334555677778888 87 34444333222221 121 24799999976432 1 1123456665666
Q ss_pred CCCceEEcc
Q 025574 153 GDHFPLYAH 161 (250)
Q Consensus 153 g~~~PILGI 161 (250)
+|+..+
T Consensus 86 ---iPvv~~ 91 (272)
T cd06300 86 ---IPVVSF 91 (272)
T ss_pred ---CeEEEE
Confidence 888764
No 231
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=58.59 E-value=88 Score=27.60 Aligned_cols=63 Identities=10% Similarity=0.084 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChh----hHHHhc-c--cCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceE
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPED----VLFEKL-E--LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~----~l~~~l-~--~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PI 158 (250)
+...+.+.+++.|..++......+.+ .+...+ . ++||||+.+... . ....++.+.+++ +||
T Consensus 18 ~~~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~---~----~~~~~~~~~~~g-----iPv 85 (305)
T cd06324 18 VARFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNEKS---V----APELLRLAEGAG-----VKL 85 (305)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCCcc---c----hHHHHHHHHhCC-----CeE
Confidence 44556677888899887765443332 122233 3 799999975432 1 123455555556 776
Q ss_pred Ec
Q 025574 159 YA 160 (250)
Q Consensus 159 LG 160 (250)
.-
T Consensus 86 V~ 87 (305)
T cd06324 86 FL 87 (305)
T ss_pred EE
Confidence 53
No 232
>PRK08227 autoinducer 2 aldolase; Validated
Probab=58.56 E-value=56 Score=29.41 Aligned_cols=87 Identities=14% Similarity=0.151 Sum_probs=51.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccC-CEEEECCCCCCCccchH
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELV-NGVLYTGGWAKDGLYYA 137 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~-dgvIlpGG~~~~~~~~~ 137 (250)
.-|+|++. |.... . . ....+|+. .++.-.++|++++-++|.. +...+..+.+ --|++.||+.. +. +
T Consensus 140 G~Plla~~--prG~~---~-~-~~~~~ia~-aaRiaaELGADiVK~~y~~--~~f~~vv~a~~vPVviaGG~k~-~~--~ 206 (264)
T PRK08227 140 GMPVMAVT--AVGKD---M-V-RDARYFSL-ATRIAAEMGAQIIKTYYVE--EGFERITAGCPVPIVIAGGKKL-PE--R 206 (264)
T ss_pred CCcEEEEe--cCCCC---c-C-chHHHHHH-HHHHHHHHcCCEEecCCCH--HHHHHHHHcCCCcEEEeCCCCC-CH--H
Confidence 45999854 32211 1 1 12336553 4566677899999998864 4444444433 47999999874 21 2
Q ss_pred HHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 138 IVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 138 ~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
..-+.++.+++.+ --|||.|=
T Consensus 207 ~~L~~v~~ai~aG-------a~Gv~~GR 227 (264)
T PRK08227 207 DALEMCYQAIDEG-------ASGVDMGR 227 (264)
T ss_pred HHHHHHHHHHHcC-------Cceeeech
Confidence 2335556666666 56777663
No 233
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=58.32 E-value=72 Score=27.14 Aligned_cols=67 Identities=7% Similarity=0.023 Sum_probs=37.7
Q ss_pred chhhHHHHHHHHHH-cCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCc
Q 025574 83 ASYIAASYVKFVES-AGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHF 156 (250)
Q Consensus 83 ~~~i~~s~v~~le~-~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~ 156 (250)
..-+...+.+++++ .|..+++.....+.+. +...+ .++||+|+.+... + ....+++.+.+.+ +
T Consensus 14 ~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~--~----~~~~~~~~l~~~~-----i 82 (272)
T cd06301 14 LTLLRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDT--A----ATAPIVKAANAAG-----I 82 (272)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCch--h----hhHHHHHHHHHCC-----C
Confidence 33455667778888 8888776543323222 22222 3789999976432 1 1124456665666 7
Q ss_pred eEEc
Q 025574 157 PLYA 160 (250)
Q Consensus 157 PILG 160 (250)
|+..
T Consensus 83 Pvv~ 86 (272)
T cd06301 83 PLVY 86 (272)
T ss_pred eEEE
Confidence 7754
No 234
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=58.15 E-value=48 Score=33.29 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=41.2
Q ss_pred CCCCcEEEEeCCCCCC-CCCC-CCCCCcchhhHHHHHHHHHHcCCeEEEee-cCCChhhHH----HhcccCCEEEECCCC
Q 025574 57 LNYRPVIGIVTHPGDG-ASGR-LNNATNASYIAASYVKFVESAGARVIPLI-YNEPEDVLF----EKLELVNGVLYTGGW 129 (250)
Q Consensus 57 ~~~~PvIGI~~~~~~~-~~~~-~~~~~~~~~i~~s~v~~le~~G~~~v~i~-~~~~~~~l~----~~l~~~dgvIlpGG~ 129 (250)
...+|.|||++.-..- ..+. ...+....-....+..++++.|++++... ...+.+.+. +.++.+|-||.+||-
T Consensus 183 v~~~prv~vi~tG~El~~~~~~~~~g~i~dsn~~~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~~~D~iIttGG~ 262 (633)
T PRK14498 183 VYKKPRVGIISTGDELVEPGEPLKPGKIYDVNSYTLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALKECDLVLLSGGT 262 (633)
T ss_pred EecCcEEEEEecCccccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEECCCC
Confidence 4568999997543210 0010 00111111122234467999999886543 233444443 333568999999998
Q ss_pred CCC
Q 025574 130 AKD 132 (250)
Q Consensus 130 ~~~ 132 (250)
+..
T Consensus 263 s~g 265 (633)
T PRK14498 263 SAG 265 (633)
T ss_pred cCC
Confidence 753
No 235
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.07 E-value=29 Score=30.92 Aligned_cols=59 Identities=14% Similarity=-0.022 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
+...+.+++.+.|..+..-.. .+ .....+|.+|.-||-+ .+ ++.+...+ +||+||-.|.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~---~~---~~~~~~d~vi~iGGDG---T~-------L~a~~~~~-----~Pilgin~G~ 72 (256)
T PRK14075 14 EAKFLKEKISKEHEVVEFCEA---SA---SGKVTADLIIVVGGDG---TV-------LKAAKKVG-----TPLVGFKAGR 72 (256)
T ss_pred HHHHHHHHHHHcCCeeEeecc---cc---cccCCCCEEEEECCcH---HH-------HHHHHHcC-----CCEEEEeCCC
Confidence 345577788888876553321 11 1245789999999955 22 23222225 9999999885
No 236
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=57.88 E-value=78 Score=26.68 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChh---hHHHhc--ccCCEEEECCCC
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPED---VLFEKL--ELVNGVLYTGGW 129 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~---~l~~~l--~~~dgvIlpGG~ 129 (250)
+...+.+.+++.|..+.....+...+ .+.+.+ .++||+|+.+..
T Consensus 21 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~ 69 (268)
T cd06271 21 FLSGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRTR 69 (268)
T ss_pred HHHHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 44567778888998887765443222 223333 359999997753
No 237
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=57.54 E-value=75 Score=26.58 Aligned_cols=47 Identities=11% Similarity=0.041 Sum_probs=30.0
Q ss_pred chhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCC
Q 025574 83 ASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 83 ~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~ 129 (250)
...+...+.+++++.|..++......+.+. +.+.+ .++||||+.+..
T Consensus 14 ~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~ 65 (267)
T cd01536 14 WQAMNKGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVD 65 (267)
T ss_pred HHHHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 444666677888889998887765433322 22222 379999997653
No 238
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=57.50 E-value=73 Score=28.00 Aligned_cols=46 Identities=7% Similarity=-0.021 Sum_probs=27.7
Q ss_pred chhhHHHHHHHHHHcCCeEEEe-ecCCChhhH----HHhc-ccCCEEEECCC
Q 025574 83 ASYIAASYVKFVESAGARVIPL-IYNEPEDVL----FEKL-ELVNGVLYTGG 128 (250)
Q Consensus 83 ~~~i~~s~v~~le~~G~~~v~i-~~~~~~~~l----~~~l-~~~dgvIlpGG 128 (250)
...+...+.+.+++.|..+..+ +.+.+.+.. ...+ .++||||+.+.
T Consensus 14 ~~~i~~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~ 65 (298)
T cd06302 14 FNRMEEGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPN 65 (298)
T ss_pred HHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 3345566777888899988765 333232222 1222 36899999753
No 239
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=57.32 E-value=80 Score=26.71 Aligned_cols=43 Identities=9% Similarity=0.109 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChh---hHHHhc--ccCCEEEECCC
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPED---VLFEKL--ELVNGVLYTGG 128 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~---~l~~~l--~~~dgvIlpGG 128 (250)
+.....+++++.|..+.......+.+ .+...+ .++||||+.+.
T Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 69 (270)
T cd06294 22 VLRGISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYS 69 (270)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecC
Confidence 44556678888998887654332222 222323 24899999764
No 240
>PRK09271 flavodoxin; Provisional
Probab=57.00 E-value=1e+02 Score=24.91 Aligned_cols=82 Identities=12% Similarity=-0.028 Sum_probs=40.4
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCCC-hhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEE
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNEP-EDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~~-~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PIL 159 (250)
+....++..+.+.++..|..+.+...... .+.+...+.++|+|+|.--.-..+.+......+++...+...++..+=++
T Consensus 12 GnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avf 91 (160)
T PRK09271 12 GNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVF 91 (160)
T ss_pred chHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEE
Confidence 34567788888899999987765443221 11112224467887775421111122222334444443322123335566
Q ss_pred ccc
Q 025574 160 AHC 162 (250)
Q Consensus 160 GIC 162 (250)
|.+
T Consensus 92 gsg 94 (160)
T PRK09271 92 GTG 94 (160)
T ss_pred ecC
Confidence 665
No 241
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=56.73 E-value=85 Score=26.62 Aligned_cols=43 Identities=9% Similarity=0.039 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChhhHHH-----hcccCCEEEECCC
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPEDVLFE-----KLELVNGVLYTGG 128 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~l~~-----~l~~~dgvIlpGG 128 (250)
+...+.+.+++.|..++....+.+.+...+ .-..+||||+.+-
T Consensus 17 ~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (265)
T cd06285 17 MYEGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILGDA 64 (265)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 345677788889998876554433322111 1246899999753
No 242
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=56.56 E-value=63 Score=27.40 Aligned_cols=44 Identities=11% Similarity=0.027 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCC
Q 025574 85 YIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGG 128 (250)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG 128 (250)
-+.....+.+++.|..++....+.+.+. +.... .++||||+.+.
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (270)
T cd06296 16 EVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTP 64 (270)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 3445567788889998877655433321 22222 35899998654
No 243
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=56.18 E-value=76 Score=27.00 Aligned_cols=45 Identities=9% Similarity=-0.076 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHcCCeEEEeecC--CChhhH----HHhc-ccCCEEEECCC
Q 025574 84 SYIAASYVKFVESAGARVIPLIYN--EPEDVL----FEKL-ELVNGVLYTGG 128 (250)
Q Consensus 84 ~~i~~s~v~~le~~G~~~v~i~~~--~~~~~l----~~~l-~~~dgvIlpGG 128 (250)
..+...+.+++++.|..+...... .+.+.. ...+ .++||||+.+.
T Consensus 15 ~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~ 66 (273)
T cd06310 15 QAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPT 66 (273)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 445566778888999988776431 222221 1112 36999999764
No 244
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=55.74 E-value=72 Score=27.36 Aligned_cols=46 Identities=9% Similarity=-0.085 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHcCCeEEEeecCCChh---hHHHhc--ccCCEEEECCCC
Q 025574 84 SYIAASYVKFVESAGARVIPLIYNEPED---VLFEKL--ELVNGVLYTGGW 129 (250)
Q Consensus 84 ~~i~~s~v~~le~~G~~~v~i~~~~~~~---~l~~~l--~~~dgvIlpGG~ 129 (250)
.-+...+.+.+++.|..+.....+.+.+ .+...+ .++||||+.+..
T Consensus 15 ~~~~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~ 65 (269)
T cd06297 15 RRLLEGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASYD 65 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 3345567788888999888776543221 122212 359999998753
No 245
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=55.67 E-value=69 Score=27.01 Aligned_cols=44 Identities=9% Similarity=0.021 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHcCCeEEEeecCCChhhHH----Hh-cccCCEEEECC
Q 025574 84 SYIAASYVKFVESAGARVIPLIYNEPEDVLF----EK-LELVNGVLYTG 127 (250)
Q Consensus 84 ~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~----~~-l~~~dgvIlpG 127 (250)
.-+...+.+.+++.|.+++......+.+... .. -.++||||+.+
T Consensus 15 ~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~ 63 (268)
T cd06323 15 VTLKDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINP 63 (268)
T ss_pred HHHHHHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 3345567778888998887765433333221 11 13699999964
No 246
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=55.25 E-value=1.3e+02 Score=26.65 Aligned_cols=62 Identities=15% Similarity=0.135 Sum_probs=35.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhH----HHh-cccCCEEEECCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGG 128 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dgvIlpGG 128 (250)
....||++..... + ....-+...+.+.+++.|..+++.....+.+.. ... -.++||||+.+.
T Consensus 60 ~~~~Igvv~~~~~-------~-~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 126 (328)
T PRK11303 60 RTRSIGLIIPDLE-------N-TSYARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTS 126 (328)
T ss_pred CCceEEEEeCCCC-------C-chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4568999874211 1 122234455667788899988776543333211 111 236899999765
No 247
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=55.23 E-value=32 Score=30.97 Aligned_cols=97 Identities=15% Similarity=0.269 Sum_probs=59.1
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEE-Ee--ec--CCChhhHHHhcccCCEEEECCCCCC--C
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVI-PL--IY--NEPEDVLFEKLELVNGVLYTGGWAK--D 132 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v-~i--~~--~~~~~~l~~~l~~~dgvIlpGG~~~--~ 132 (250)
+-.|.|...-+..+ .-+...|.+.+|..|+.-+ ++ .. +.+.+.+...+++++||+|+||-.. -
T Consensus 52 ~A~i~I~paas~ep----------~~iG~~y~rife~~gv~~v~ildir~R~~a~~s~~~~~v~~a~gIfftGGDQ~ri~ 121 (293)
T COG4242 52 KAYIVIIPAASREP----------RAIGGNYIRIFEMMGVEEVQILDIRNREDASSSDIVAKVENATGIFFTGGDQLRII 121 (293)
T ss_pred ceEEEEEecCccCh----------hhhccchhhHHHHhccceeEEEeeecccccchHHHHHHHHhCceEEEecCcceeee
Confidence 34778876554321 2334557778888887443 22 22 1234455567889999999999752 1
Q ss_pred ccchHH-HHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 133 GLYYAI-VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 133 ~~~~~~-~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
..+.++ ..+.++.....+ .-+-|+--|.-+|...
T Consensus 122 ~~lkdTpl~~~ir~r~r~G-----~avgGTSAGAavM~~~ 156 (293)
T COG4242 122 GSLKDTPLMAAIRQRVRRG-----IAVGGTSAGAAVMSDH 156 (293)
T ss_pred eeccCCHHHHHHHHHHhcC-----ceecccccchhhcCCc
Confidence 111111 224444444445 8999999999999874
No 248
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=55.08 E-value=89 Score=26.66 Aligned_cols=65 Identities=11% Similarity=0.058 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHcCCeEEEeecC--CChhh----HHHhc-ccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceE
Q 025574 86 IAASYVKFVESAGARVIPLIYN--EPEDV----LFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~--~~~~~----l~~~l-~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PI 158 (250)
+...+.+++++.|..+.+...+ .+.+. ++..+ .++||||+.+... + .....++.+.+++ +|+
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~--~----~~~~~~~~~~~~~-----iPv 85 (275)
T cd06320 17 LKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISD--V----NLVPAVERAKKKG-----IPV 85 (275)
T ss_pred HHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCCh--H----HhHHHHHHHHHCC-----CeE
Confidence 4455677888899988766432 12221 22222 3699999865432 1 1123355555667 887
Q ss_pred Ecc
Q 025574 159 YAH 161 (250)
Q Consensus 159 LGI 161 (250)
..+
T Consensus 86 V~~ 88 (275)
T cd06320 86 VNV 88 (275)
T ss_pred EEE
Confidence 655
No 249
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=55.07 E-value=1e+02 Score=27.11 Aligned_cols=59 Identities=8% Similarity=0.101 Sum_probs=36.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeec-C---------CChhhHHHhc-----ccCCEE
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY-N---------EPEDVLFEKL-----ELVNGV 123 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~-~---------~~~~~l~~~l-----~~~dgv 123 (250)
.-..|+|+|. +...+.+...+++++.|.+++-+.. . .+++.+.+.+ ..+|+|
T Consensus 119 g~~RIalvTP-------------Y~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAi 185 (239)
T TIGR02990 119 GVRRISLLTP-------------YTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADAL 185 (239)
T ss_pred CCCEEEEECC-------------CcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEE
Confidence 4467888773 3445667788899999988876521 1 1334333322 357888
Q ss_pred EECCCCC
Q 025574 124 LYTGGWA 130 (250)
Q Consensus 124 IlpGG~~ 130 (250)
++++..-
T Consensus 186 fisCTnL 192 (239)
T TIGR02990 186 FLSCTAL 192 (239)
T ss_pred EEeCCCc
Confidence 8886654
No 250
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=54.91 E-value=72 Score=27.08 Aligned_cols=65 Identities=15% Similarity=0.098 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChhhH----HHh-cccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEc
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILG 160 (250)
+.....+++++.|..+++.....+.+.. ... -.++||||+.+... +. ....++.+.+++ +|+.-
T Consensus 18 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~--~~----~~~~l~~~~~~~-----iPvV~ 86 (275)
T cd06317 18 YNKAFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDG--QA----YIPGLRKAKQAG-----IPVVI 86 (275)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCc--cc----cHHHHHHHHHCC-----CcEEE
Confidence 4456677788899988776543333222 111 13689999976432 11 113345555566 78654
Q ss_pred c
Q 025574 161 H 161 (250)
Q Consensus 161 I 161 (250)
+
T Consensus 87 ~ 87 (275)
T cd06317 87 T 87 (275)
T ss_pred e
Confidence 3
No 251
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=54.80 E-value=76 Score=26.85 Aligned_cols=43 Identities=12% Similarity=0.049 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChhhHHHhc-ccCCEEEECCC
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPEDVLFEKL-ELVNGVLYTGG 128 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l-~~~dgvIlpGG 128 (250)
+...+.+.+++.|..+.+.......+.+.... .++||||+.+.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 60 (261)
T cd06272 17 LVTGINQAISKNGYNMNVSITPSLAEAEDLFKENRFDGVIIFGE 60 (261)
T ss_pred HHHHHHHHHHHcCCEEEEEecccHHHHHHHHHHcCcCEEEEeCC
Confidence 44567778888898877765432222222222 36999998764
No 252
>PRK07308 flavodoxin; Validated
Probab=54.67 E-value=1.1e+02 Score=24.26 Aligned_cols=77 Identities=10% Similarity=0.075 Sum_probs=43.2
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCC-ccchHHHHHHHHHHHHhCCCCCCceEE
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD-GLYYAIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~-~~~~~~~~~li~~~~~~~~~g~~~PIL 159 (250)
+...-++..+.+.+++.|..+.+....... .. .+...|.|+| |-+... ..+......+++...+.+-++...=++
T Consensus 13 GnTe~iA~~ia~~l~~~g~~~~~~~~~~~~--~~-~l~~~d~vi~-g~~t~g~G~~p~~~~~fl~~l~~~~l~~k~~~vf 88 (146)
T PRK07308 13 GNTEEIADIVADKLRELGHDVDVDECTTVD--AS-DFEDADIAIV-ATYTYGDGELPDEIVDFYEDLADLDLSGKIYGVV 88 (146)
T ss_pred chHHHHHHHHHHHHHhCCCceEEEecccCC--Hh-HhccCCEEEE-EeCccCCCCCCHHHHHHHHHHhcCCCCCCEEEEE
Confidence 345566777778888888877666543221 11 2567899888 555432 333334456666654332234334455
Q ss_pred cc
Q 025574 160 AH 161 (250)
Q Consensus 160 GI 161 (250)
|.
T Consensus 89 G~ 90 (146)
T PRK07308 89 GS 90 (146)
T ss_pred ee
Confidence 55
No 253
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=53.89 E-value=12 Score=32.86 Aligned_cols=44 Identities=11% Similarity=0.199 Sum_probs=26.9
Q ss_pred cCCEEEECCCCCCCccchH----HHH-HHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCc
Q 025574 119 LVNGVLYTGGWAKDGLYYA----IVE-KVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKD 175 (250)
Q Consensus 119 ~~dgvIlpGG~~~~~~~~~----~~~-~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~ 175 (250)
.-..||+|||.+.. |-. ... .+.+++ +.+ -=.||||-|- ++|+.
T Consensus 49 ~T~lLV~pGGaDlp--Y~~~l~g~g~a~i~~yv-k~G-----G~fLGiCAG~-----YFg~~ 97 (253)
T COG4285 49 TTLLLVFPGGADLP--YVQVLQGLGTARIKNYV-KEG-----GNFLGICAGG-----YFGSA 97 (253)
T ss_pred ceEEEEecCCCCch--HHHHhcchhhhhHHHHH-hcC-----CeEEEEeccc-----cccce
Confidence 45689999998841 222 122 344444 344 5789999886 55654
No 254
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=53.89 E-value=97 Score=26.46 Aligned_cols=65 Identities=5% Similarity=-0.101 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHc-----CCeEEEeecCCChhhH----HHhc-ccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCC
Q 025574 85 YIAASYVKFVESA-----GARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGD 154 (250)
Q Consensus 85 ~i~~s~v~~le~~-----G~~~v~i~~~~~~~~l----~~~l-~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~ 154 (250)
-+.....+..++. |..+.......+.+.. .... .++||||+.+... + .....++.+.+++
T Consensus 16 ~~~~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~~~--~----~~~~~i~~~~~~g---- 85 (274)
T cd06311 16 GIVWHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPFES--A----PLTQPVAKAKKAG---- 85 (274)
T ss_pred HHHHHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCc--h----hhHHHHHHHHHCC----
Confidence 3445566677775 5666665443333222 2233 3699999976422 1 1223456666666
Q ss_pred CceEEc
Q 025574 155 HFPLYA 160 (250)
Q Consensus 155 ~~PILG 160 (250)
+||.-
T Consensus 86 -IpvV~ 90 (274)
T cd06311 86 -IFVVV 90 (274)
T ss_pred -CeEEE
Confidence 77654
No 255
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=53.60 E-value=32 Score=28.11 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=24.1
Q ss_pred CCCCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEE
Q 025574 56 KLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVI 102 (250)
Q Consensus 56 ~~~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v 102 (250)
....+|+|||+|......+ ..-+ ....++|+.+|++-+
T Consensus 86 ~~f~~pvIGVITK~Dl~~~--------~~~i-~~a~~~L~~aG~~~i 123 (143)
T PF10662_consen 86 SMFNKPVIGVITKIDLPSD--------DANI-ERAKKWLKNAGVKEI 123 (143)
T ss_pred cccCCCEEEEEECccCccc--------hhhH-HHHHHHHHHcCCCCe
Confidence 3457999999997754210 1122 234579999998643
No 256
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=53.24 E-value=75 Score=27.56 Aligned_cols=45 Identities=13% Similarity=0.032 Sum_probs=30.1
Q ss_pred cchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCC
Q 025574 82 NASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGG 128 (250)
Q Consensus 82 ~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG 128 (250)
...-+...+.+.+++.|..++........+.+. -.++||+|+.+.
T Consensus 21 ~~~~~~~~i~~~~~~~gy~~~~~~~~~~~~~l~--~~~vdgiIi~~~ 65 (269)
T cd06287 21 FMMEVAAAAAESALERGLALCLVPPHEADSPLD--ALDIDGAILVEP 65 (269)
T ss_pred cHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhh--ccCcCeEEEecC
Confidence 344566667788899999988876543223222 347999999764
No 257
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=52.51 E-value=1.2e+02 Score=27.00 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=35.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHh-cccCCEEEECC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTG 127 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dgvIlpG 127 (250)
....||++..... .....-+...+.+.+++.|..++......+.+. +... -.++||||+.+
T Consensus 62 ~~~~Igvi~~~~~--------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~ 127 (331)
T PRK14987 62 TSRAIGVLLPSLT--------NQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTE 127 (331)
T ss_pred CCCEEEEEeCCCc--------chhHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3458999863211 112233445567788888998876654433321 1111 13699999975
No 258
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=52.48 E-value=1.6e+02 Score=27.43 Aligned_cols=85 Identities=20% Similarity=0.279 Sum_probs=55.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChh---hHHHhcccCCEEEECCCCCCCccc
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED---VLFEKLELVNGVLYTGGWAKDGLY 135 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~---~l~~~l~~~dgvIlpGG~~~~~~~ 135 (250)
+-..|||+-.|+.. ......+.+.+..+..|..++........| .......+.|.|++|=-. ..
T Consensus 158 nak~Igv~Y~p~E~---------ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn----~i 224 (322)
T COG2984 158 NAKSIGVLYNPGEA---------NSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDN----LI 224 (322)
T ss_pred CCeeEEEEeCCCCc---------ccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecch----HH
Confidence 44579998888642 234455667888899999998887643222 222334667888776322 22
Q ss_pred hHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 136 YAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 136 ~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
....+.++..+.+++ +|+++=
T Consensus 225 ~s~~~~l~~~a~~~k-----iPli~s 245 (322)
T COG2984 225 VSAIESLLQVANKAK-----IPLIAS 245 (322)
T ss_pred HHHHHHHHHHHHHhC-----CCeecC
Confidence 224467888888888 999853
No 259
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=52.37 E-value=1.2e+02 Score=25.73 Aligned_cols=45 Identities=9% Similarity=0.134 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHHcCCeEEEeecCCChhhHH----Hh-cccCCEEEECCC
Q 025574 84 SYIAASYVKFVESAGARVIPLIYNEPEDVLF----EK-LELVNGVLYTGG 128 (250)
Q Consensus 84 ~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~----~~-l~~~dgvIlpGG 128 (250)
..+...+.+.+++.|..+.....+.+.+... .. -.++||||+.+-
T Consensus 15 ~~~~~gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (269)
T cd06293 15 AELADAVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTN 64 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 3455567788999999887765433332211 11 136999999864
No 260
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=51.97 E-value=1e+02 Score=25.95 Aligned_cols=43 Identities=14% Similarity=0.022 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChhhH----HHhc-ccCCEEEECCC
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGG 128 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dgvIlpGG 128 (250)
+...+.+++++.|..++.+....+.+.. .... .++||+|+.+.
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06284 17 ILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDG 64 (267)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 4456778899999988776654433222 1112 36899999654
No 261
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=51.96 E-value=90 Score=26.58 Aligned_cols=66 Identities=11% Similarity=-0.030 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHH--cCCeEEEeecCCChhhH----HHh-cccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCce
Q 025574 85 YIAASYVKFVES--AGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFP 157 (250)
Q Consensus 85 ~i~~s~v~~le~--~G~~~v~i~~~~~~~~l----~~~-l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~P 157 (250)
-+...+.+++++ .|..++......+.+.. ... -.++||||+.+... . .....++.+.+.+ +|
T Consensus 16 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~--~----~~~~~i~~~~~~~-----ip 84 (271)
T cd06321 16 ALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVDS--K----GIAPAVKRAQAAG-----IV 84 (271)
T ss_pred HHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh--h----HhHHHHHHHHHCC-----Ce
Confidence 355567788888 55555544333332222 111 23689999975321 1 1123455555556 77
Q ss_pred EEcc
Q 025574 158 LYAH 161 (250)
Q Consensus 158 ILGI 161 (250)
+.-+
T Consensus 85 vv~~ 88 (271)
T cd06321 85 VVAV 88 (271)
T ss_pred EEEe
Confidence 6554
No 262
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=51.79 E-value=1.3e+02 Score=25.72 Aligned_cols=67 Identities=9% Similarity=0.019 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHcCCeEEEeecCC-ChhhHHHh-----cccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEE
Q 025574 86 IAASYVKFVESAGARVIPLIYNE-PEDVLFEK-----LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~-----l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PIL 159 (250)
+...+.+++++.|..+.....+. +.+...+. -.++||+|+.+... . .....++.+.+++ +|+.
T Consensus 18 ~~~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~--~----~~~~~l~~~~~~~-----ipvV 86 (271)
T cd06312 18 VKNGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDP--D----ALDPAIKRAVAAG-----IPVI 86 (271)
T ss_pred HHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh--H----HhHHHHHHHHHCC-----CeEE
Confidence 45567778888999887765443 33222111 13699999986422 1 1123456665666 8887
Q ss_pred cccc
Q 025574 160 AHCL 163 (250)
Q Consensus 160 GICl 163 (250)
-+..
T Consensus 87 ~~~~ 90 (271)
T cd06312 87 SFNA 90 (271)
T ss_pred EeCC
Confidence 7643
No 263
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.71 E-value=1.2e+02 Score=25.65 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHcCCeEEEeecCCChhhH----HHhc-ccCCEEEECCCC
Q 025574 85 YIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dgvIlpGG~ 129 (250)
-+...+.+.+++.|..+.......+.+.. .... ..+||||+.+..
T Consensus 17 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~ 66 (269)
T cd06288 17 EIILGAQDAAREHGYLLLVVNTGGDDELEAEAVEALLDHRVDGIIYATMY 66 (269)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 34456777888899988776654333221 1222 358999998743
No 264
>PRK06851 hypothetical protein; Provisional
Probab=51.51 E-value=48 Score=31.28 Aligned_cols=53 Identities=17% Similarity=0.075 Sum_probs=40.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGG 128 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG 128 (250)
.+.++.|+..|+. +.+-+...+.+.+.+.|.++...+...+++ ++|+||+|.=
T Consensus 213 ~~~~~~i~G~pG~----------GKstl~~~i~~~a~~~G~~v~~~hC~~dPd-------slD~viIPel 265 (367)
T PRK06851 213 VKNRYFLKGRPGT----------GKSTMLKKIAKAAEERGFDVEVYHCGFDPD-------SLDMVIIPEL 265 (367)
T ss_pred cceEEEEeCCCCC----------cHHHHHHHHHHHHHhCCCeEEEEeCCCCCC-------CcceEEeccC
Confidence 4567888887764 455666778888888899999888765543 6799999873
No 265
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=51.30 E-value=1.3e+02 Score=26.57 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=35.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHH----Hhc-ccCCEEEECCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLF----EKL-ELVNGVLYTGG 128 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~----~~l-~~~dgvIlpGG 128 (250)
....||++..... ......+...+.+.+++.|..+++...+.+.+... ... .++||||+.+.
T Consensus 58 ~~~~Igvv~~~~~--------~~f~~~l~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 124 (329)
T TIGR01481 58 RTTTVGVIIPDIS--------NIYYAELARGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGG 124 (329)
T ss_pred CCCEEEEEeCCCC--------chhHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3468999874321 11223344556677888899887765443332211 111 36899999764
No 266
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=51.13 E-value=74 Score=26.81 Aligned_cols=65 Identities=12% Similarity=0.110 Sum_probs=37.8
Q ss_pred CcchhhHHHHHHHHHH-cCCeEEEeecCCC-hhhH----------------HHhcccCCEEEECCCCCCCccchHHHHHH
Q 025574 81 TNASYIAASYVKFVES-AGARVIPLIYNEP-EDVL----------------FEKLELVNGVLYTGGWAKDGLYYAIVEKV 142 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~-~G~~~v~i~~~~~-~~~l----------------~~~l~~~dgvIlpGG~~~~~~~~~~~~~l 142 (250)
....-+++.+.+.+++ .|+++.++..... +..+ .+.+..+|+|||- .|.....+....+.+
T Consensus 13 G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~g-sPty~g~~~~~lk~f 91 (200)
T PRK03767 13 GHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFG-TPTRFGNMAGQMRNF 91 (200)
T ss_pred CHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEE-ecccCCCchHHHHHH
Confidence 3456677888888988 8998877765321 1111 2346789988764 333223333344455
Q ss_pred HHHH
Q 025574 143 FKKI 146 (250)
Q Consensus 143 i~~~ 146 (250)
++..
T Consensus 92 ld~~ 95 (200)
T PRK03767 92 LDQT 95 (200)
T ss_pred HHHh
Confidence 5554
No 267
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=50.42 E-value=1.3e+02 Score=25.57 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHcCCeEEEeecCCChhh----HHHh-cccCCEEEECCC
Q 025574 85 YIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGG 128 (250)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dgvIlpGG 128 (250)
.+.....+.+++.|.+++......+.+. +... -.++||+|+.+.
T Consensus 16 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (277)
T cd06319 16 IMGRGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPT 64 (277)
T ss_pred HHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3455667778889988877654333221 2222 257999998654
No 268
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=50.24 E-value=1.1e+02 Score=25.79 Aligned_cols=43 Identities=26% Similarity=0.247 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCC
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGG 128 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG 128 (250)
+.....+++++.|..++......+.+. +.... .++||+|+.+.
T Consensus 17 ~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (268)
T cd06289 17 LAAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPA 64 (268)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 445566788888988766543322221 12222 36899999865
No 269
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=49.19 E-value=1.3e+02 Score=27.58 Aligned_cols=61 Identities=18% Similarity=0.151 Sum_probs=40.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHH----h-cccCCEEEECC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFE----K-LELVNGVLYTG 127 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~----~-l~~~dgvIlpG 127 (250)
..-+||++..... + ....-+...+.+.+++.|..+.+...+.+++...+ . -.++||||+.|
T Consensus 57 ~s~~Ig~i~p~~~-------~-~~~~~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 57 RTKTIGLVVPDIT-------N-PFFAEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred CCCEEEEEeCCCC-------C-chHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 4568999886322 1 23334556677888889999888776654443221 1 24699999999
No 270
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=49.12 E-value=1e+02 Score=26.16 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHcCCeEEEeecCCChhhH---HHh--cccCCEEEECCC
Q 025574 84 SYIAASYVKFVESAGARVIPLIYNEPEDVL---FEK--LELVNGVLYTGG 128 (250)
Q Consensus 84 ~~i~~s~v~~le~~G~~~v~i~~~~~~~~l---~~~--l~~~dgvIlpGG 128 (250)
.-+...+.+.+++.|..++....+.+.+.. .+. -.++||||+.+.
T Consensus 18 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 67 (268)
T cd06277 18 SEIYRAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGG 67 (268)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCC
Confidence 345556778888899988776654333211 111 246999999764
No 271
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=48.93 E-value=1.1e+02 Score=27.07 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=36.7
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhH---HHhc-ccCCEEEECCC
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL---FEKL-ELVNGVLYTGG 128 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l---~~~l-~~~dgvIlpGG 128 (250)
..|||+-....+ ...+-+...+.+.+++.|..+++.....+.+.. ..++ .++||+|+.+-
T Consensus 2 ~~IGvivp~~~n--------pff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~ 65 (279)
T PF00532_consen 2 KTIGVIVPDISN--------PFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASS 65 (279)
T ss_dssp CEEEEEESSSTS--------HHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESS
T ss_pred CEEEEEECCCCC--------cHHHHHHHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecc
Confidence 468887654321 122335566777888899998877655443322 1111 46999999944
No 272
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=48.57 E-value=1.2e+02 Score=28.52 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHcCCeEEEeecCCChhhHHHh-------------------------cccC----CEEEECCCCCC
Q 025574 84 SYIAASYVKFVESAGARVIPLIYNEPEDVLFEK-------------------------LELV----NGVLYTGGWAK 131 (250)
Q Consensus 84 ~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~-------------------------l~~~----dgvIlpGG~~~ 131 (250)
.+|+. .++.--++||+++-++|..+.+...+. .+.+ -.||+.||+..
T Consensus 217 d~Ia~-AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~ 292 (348)
T PRK09250 217 DLTGQ-ANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASK 292 (348)
T ss_pred HHHHH-HHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCC
Confidence 45543 345556789999999987654443333 4443 46999999875
No 273
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=48.57 E-value=90 Score=31.18 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=30.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeec
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY 106 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~ 106 (250)
.||+|||.....+..++ +.+-.-+++...+.++++|+.+..++.
T Consensus 30 ~kP~IgI~ns~se~~Pc----h~hl~~la~~Vk~gi~~aGg~p~ef~t 73 (552)
T PRK00911 30 DKPFIGIANSWNEITPC----NIHLNELADAVKEGVRAAGGVPFEFNT 73 (552)
T ss_pred cCCEEEEeccccccccc----hhhHHHHHHHHHHHHHHcCCEeEEeCC
Confidence 69999999877654332 233334556677788999998876643
No 274
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=48.48 E-value=1.9e+02 Score=25.49 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=36.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHh-cccCCEEEECCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGG 128 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dgvIlpGG 128 (250)
....||++..... .....-+...+.+.+++.|..+.+...+.+.+. +... -.++||||+.+.
T Consensus 59 ~~~~Igvi~~~~~--------~~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 125 (327)
T TIGR02417 59 RSRTIGLVIPDLE--------NYSYARIAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASC 125 (327)
T ss_pred CCceEEEEeCCCC--------CccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3468999864211 112233455677788889998877655433322 1111 236899998764
No 275
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=48.17 E-value=1.2e+02 Score=25.38 Aligned_cols=43 Identities=23% Similarity=0.371 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChh---hHHHhc-ccCCEEEECCC
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPED---VLFEKL-ELVNGVLYTGG 128 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~---~l~~~l-~~~dgvIlpGG 128 (250)
+...+.+.+++.|..+.....+.+.+ .+...+ ..+||||+.+.
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 63 (266)
T cd06278 17 LLEALSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSG 63 (266)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecC
Confidence 34456778899999888776543321 111212 46999999754
No 276
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=47.87 E-value=85 Score=26.90 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCeE-EEeecCCChhhHHHhcccCCEEEECCC
Q 025574 89 SYVKFVESAGARV-IPLIYNEPEDVLFEKLELVNGVLYTGG 128 (250)
Q Consensus 89 s~v~~le~~G~~~-v~i~~~~~~~~l~~~l~~~dgvIlpGG 128 (250)
...+.+++.|.++ +.+...++.+.+.+.++.+|.|++...
T Consensus 96 ~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV 136 (201)
T PF00834_consen 96 ETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSV 136 (201)
T ss_dssp HHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS
T ss_pred HHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEe
Confidence 3667889999887 455555677778888899999988553
No 277
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=47.79 E-value=59 Score=24.72 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=38.4
Q ss_pred chh-hHHHHHHHHHHcCCeEEEeecCCChhhHH---HhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceE
Q 025574 83 ASY-IAASYVKFVESAGARVIPLIYNEPEDVLF---EKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (250)
Q Consensus 83 ~~~-i~~s~v~~le~~G~~~v~i~~~~~~~~l~---~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PI 158 (250)
.++ ++..+...+...|..+..+.. .+... ..++.=|-+|+..-.... ....+.++.+.+++ .|+
T Consensus 10 ~S~~~a~~~~~~l~~~g~~~~~~~~---~~~~~~~~~~~~~~d~vi~iS~sG~t----~~~~~~~~~a~~~g-----~~v 77 (128)
T cd05014 10 KSGHIARKIAATLSSTGTPAFFLHP---TEALHGDLGMVTPGDVVIAISNSGET----DELLNLLPHLKRRG-----API 77 (128)
T ss_pred HhHHHHHHHHHHhhcCCCceEEccc---chhhccccCcCCCCCEEEEEeCCCCC----HHHHHHHHHHHHCC-----CeE
Confidence 344 444444566778877765521 12111 123344666665443322 22346778887777 999
Q ss_pred Ecccc
Q 025574 159 YAHCL 163 (250)
Q Consensus 159 LGICl 163 (250)
++|+-
T Consensus 78 i~iT~ 82 (128)
T cd05014 78 IAITG 82 (128)
T ss_pred EEEeC
Confidence 99984
No 278
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=47.72 E-value=1.3e+02 Score=25.60 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=34.6
Q ss_pred EEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECC
Q 025574 63 IGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTG 127 (250)
Q Consensus 63 IGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpG 127 (250)
||++........ ..+.....+...+.+++++.|..+.+...... ......++||+|+.+
T Consensus 2 ~~~~~~~~~~~~---~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~---~~~~~~~vdgii~~~ 60 (270)
T cd01544 2 IAIVQWYSEEEE---LDDPYYLSIRLGIEKRAQELGIELTKFFRDDD---LLEILEDVDGIIAIG 60 (270)
T ss_pred eEEEEecccccc---ccCccHHHHHHHHHHHHHHcCCEEEEEeccch---hHHhccCcCEEEEec
Confidence 677765331110 11223344555677888889998877654321 122357899999875
No 279
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=47.35 E-value=1e+02 Score=25.70 Aligned_cols=27 Identities=15% Similarity=0.341 Sum_probs=19.2
Q ss_pred cchhhHHHHHHHHHHcCCeEEEeecCC
Q 025574 82 NASYIAASYVKFVESAGARVIPLIYNE 108 (250)
Q Consensus 82 ~~~~i~~s~v~~le~~G~~~v~i~~~~ 108 (250)
++..+..+..++|++.+..+.++....
T Consensus 3 GD~~i~~~~~~~l~~~~~~~~~~~~~~ 29 (286)
T PF04230_consen 3 GDDLILEALLKLLKKHGPDAEIIIFSP 29 (286)
T ss_pred hHHHHHHHHHHHHHhcCCceEEEEeCC
Confidence 456778889999999886555554443
No 280
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=47.26 E-value=1.8e+02 Score=25.06 Aligned_cols=43 Identities=12% Similarity=0.020 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChhhH----HHh-cccCCEEEECCC
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGG 128 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dgvIlpGG 128 (250)
+...+.+.+++.|..++......+.+.. ... -.++||||+.+.
T Consensus 18 ~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~ 65 (280)
T cd06315 18 VGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGV 65 (280)
T ss_pred HHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4456778888899887765443333221 111 247999999864
No 281
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=47.18 E-value=1.1e+02 Score=26.01 Aligned_cols=66 Identities=8% Similarity=-0.006 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHc-CCeEEEeecCCChhh----HHHh-cccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEE
Q 025574 86 IAASYVKFVESA-GARVIPLIYNEPEDV----LFEK-LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 86 i~~s~v~~le~~-G~~~v~i~~~~~~~~----l~~~-l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PIL 159 (250)
+.....+.+++. |..+.+.....+.+. +... -.++||||+.+... + . ....++.+.+.+ +|+.
T Consensus 17 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~-~-~----~~~~~~~~~~~~-----ipvV 85 (270)
T cd06308 17 MNDEIQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPNEA-A-P----LTPVVEEAYRAG-----IPVI 85 (270)
T ss_pred HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCch-h-h----chHHHHHHHHCC-----CCEE
Confidence 345566677775 888776544333321 1211 23689999986432 1 0 113345555556 7775
Q ss_pred ccc
Q 025574 160 AHC 162 (250)
Q Consensus 160 GIC 162 (250)
-+.
T Consensus 86 ~~~ 88 (270)
T cd06308 86 LLD 88 (270)
T ss_pred EeC
Confidence 443
No 282
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=46.89 E-value=35 Score=28.74 Aligned_cols=84 Identities=21% Similarity=0.236 Sum_probs=44.7
Q ss_pred HHHHHHHHcCCeEE-EeecCCChhhHH----Hhccc-CCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEccc
Q 025574 89 SYVKFVESAGARVI-PLIYNEPEDVLF----EKLEL-VNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 89 s~v~~le~~G~~~v-~i~~~~~~~~l~----~~l~~-~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIC 162 (250)
-++++|+++|.++. ..-...+.+.+. ...+. +|.||.+||-.+.+.. .+ .+.++..+++. +| |.-
T Consensus 31 ~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~t~RD-vT-pEA~~~~~dKe-----ip--GFg 101 (169)
T COG0521 31 LLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTGITPRD-VT-PEATRPLFDKE-----IP--GFG 101 (169)
T ss_pred HHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCccCCCCc-CC-HHHHHHHHhcc-----CC--cHH
Confidence 35679999998762 111122333333 22233 8999999998764311 11 13445555656 55 433
Q ss_pred chhHHHHHHhcCccccccc
Q 025574 163 LGFELLTMIISKDKNILES 181 (250)
Q Consensus 163 lG~QlL~~~~GG~~~~l~~ 181 (250)
-=|..+....+|...++++
T Consensus 102 E~fR~~S~~~~g~~AiLSR 120 (169)
T COG0521 102 ELFRRLSLEEIGPTAILSR 120 (169)
T ss_pred HHHHHhhhhcCCCcEEEee
Confidence 3355555556343344443
No 283
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=46.65 E-value=64 Score=28.94 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=45.2
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHH--HHHHHHHHHhCCCCCCceE
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIV--EKVFKKILEKNDAGDHFPL 158 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~--~~li~~~~~~~~~g~~~PI 158 (250)
.++.+|..-+..+|+++|.. .+++|-+-++-||.+..+..... .+.+.. -.| +|+
T Consensus 48 HHr~~il~Lv~~al~ea~v~----------------~~diD~icyTKGPGmgaPL~~vaivaRtlsl--lw~-----kPl 104 (336)
T KOG2708|consen 48 HHRAWILGLVKQALEEAGVT----------------SDDIDCICYTKGPGMGAPLSVVAIVARTLSL--LWN-----KPL 104 (336)
T ss_pred HHHHHHHHHHHHHHHHcCCC----------------hhhCCEEEEcCCCCCCCchhhHHHHHHHHHH--HhC-----CCc
Confidence 46667766566678777642 23579999999998755443221 122222 246 999
Q ss_pred Ecc--cchhHHHHHHh
Q 025574 159 YAH--CLGFELLTMII 172 (250)
Q Consensus 159 LGI--ClG~QlL~~~~ 172 (250)
.|+ |.||--|....
T Consensus 105 v~VNHCigHIEMGR~i 120 (336)
T KOG2708|consen 105 VGVNHCIGHIEMGREI 120 (336)
T ss_pred ccchhhhhhhhhccee
Confidence 998 99998777653
No 284
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=46.57 E-value=1.1e+02 Score=25.75 Aligned_cols=45 Identities=18% Similarity=0.095 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHcCCeEEEeecCCChhhHHH----hc-ccCCEEEECCC
Q 025574 84 SYIAASYVKFVESAGARVIPLIYNEPEDVLFE----KL-ELVNGVLYTGG 128 (250)
Q Consensus 84 ~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~----~l-~~~dgvIlpGG 128 (250)
.-+...+.+.+++.|.+++......+.+...+ .. ..+||||+.+.
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (265)
T cd06291 15 SELARAVEKELYKKGYKLILCNSDNDPEKEREYLEMLRQNQVDGIIAGTH 64 (265)
T ss_pred HHHHHHHHHHHHHCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEecC
Confidence 33445667788889998876654333322211 11 36999999875
No 285
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=46.45 E-value=1.1e+02 Score=31.21 Aligned_cols=76 Identities=18% Similarity=0.190 Sum_probs=41.0
Q ss_pred CCCCCcEEEEeCCCCCCC-CCC--CCCCCcchhhHHHHHHHHHHcCCeEEEeec-CCChhhHHH----hcc-cCCEEEEC
Q 025574 56 KLNYRPVIGIVTHPGDGA-SGR--LNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLFE----KLE-LVNGVLYT 126 (250)
Q Consensus 56 ~~~~~PvIGI~~~~~~~~-~~~--~~~~~~~~~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~~----~l~-~~dgvIlp 126 (250)
....||.|+|++.-..-. .+. +..+.-.......+..++++.|++++.+.. ..+.+.+.+ .++ .+|-||.+
T Consensus 177 ~V~~kprV~visTGdELv~~g~~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DlvItT 256 (659)
T PLN02699 177 KVYPRPTVAILSTGDELVEPTTGTLGRGQIRDSNRAMLLAAAIQQQCKVVDLGIARDDEEELERILDEAISSGVDILLTS 256 (659)
T ss_pred EeecCCeEEEEeCCcccccCCCCCCCCCcEEeChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhcCCCCEEEEC
Confidence 345789999975432110 010 001111111122244589999998875432 334444443 233 58999999
Q ss_pred CCCCC
Q 025574 127 GGWAK 131 (250)
Q Consensus 127 GG~~~ 131 (250)
||-+.
T Consensus 257 GGts~ 261 (659)
T PLN02699 257 GGVSM 261 (659)
T ss_pred CCCCC
Confidence 99875
No 286
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=46.21 E-value=40 Score=30.59 Aligned_cols=42 Identities=21% Similarity=0.331 Sum_probs=26.7
Q ss_pred cCCEEEEC-CCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhH
Q 025574 119 LVNGVLYT-GGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (250)
Q Consensus 119 ~~dgvIlp-GG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~Q 166 (250)
.+|.||+. |||+...-|.-..+.+.+.+.+.. +||+ .-.||+
T Consensus 75 ~~Dviii~RGGGs~eDL~~FN~e~varai~~~~-----~Pvi-saIGHe 117 (319)
T PF02601_consen 75 DFDVIIIIRGGGSIEDLWAFNDEEVARAIAASP-----IPVI-SAIGHE 117 (319)
T ss_pred cccEEEEecCCCChHHhcccChHHHHHHHHhCC-----CCEE-EecCCC
Confidence 47887765 555543333323457788888888 9987 445664
No 287
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=45.97 E-value=96 Score=25.76 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=40.0
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHH--hCCCCCCceE
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILE--KNDAGDHFPL 158 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~--~~~~g~~~PI 158 (250)
+....++..+.+.++. |..+.+++...... ..+..+|.|||-++ ...+.+......+++...+ .+ +|+
T Consensus 12 G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~---~~l~~yD~vIlGsp-i~~G~~~~~~~~fl~~~~~~l~~-----K~v 81 (177)
T PRK11104 12 GQTRKIASYIASELKE-GIQCDVVNLHRIEE---PDLSDYDRVVIGAS-IRYGHFHSALYKFVKKHATQLNQ-----MPS 81 (177)
T ss_pred ChHHHHHHHHHHHhCC-CCeEEEEEhhhcCc---cCHHHCCEEEEECc-cccCCcCHHHHHHHHHHHHHhCC-----CeE
Confidence 3456667766777776 77777666543211 12567899776553 3222233333344433221 23 677
Q ss_pred Ecccch
Q 025574 159 YAHCLG 164 (250)
Q Consensus 159 LGIClG 164 (250)
.=.|.|
T Consensus 82 ~~F~v~ 87 (177)
T PRK11104 82 AFFSVN 87 (177)
T ss_pred EEEEec
Confidence 766666
No 288
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=45.90 E-value=1.2e+02 Score=30.09 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=29.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeec
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY 106 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~ 106 (250)
.||+|||.+...+..++ +.+..-+++...+.++++|+.+..++.
T Consensus 10 ~kP~IgI~ns~~e~~pc----h~hl~~l~~~vk~gv~~aGg~p~ef~t 53 (535)
T TIGR00110 10 GKPFIGVANSYTTIVPG----HMHLRDLAQAVKEGIEAAGGVAFEFNT 53 (535)
T ss_pred CCCEEEEEeccccCcCc----hhhHHHHHHHHHHHHHHcCCeeEEecC
Confidence 59999999877654432 123333455567788999998877643
No 289
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=45.44 E-value=1.3e+02 Score=28.80 Aligned_cols=100 Identities=15% Similarity=0.223 Sum_probs=60.7
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh-HHHhc--ccCCEEE----------
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV-LFEKL--ELVNGVL---------- 124 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~-l~~~l--~~~dgvI---------- 124 (250)
..||+|||++.--. ..++. ...+.||+.|+++.+.+-+-..-. .++++ ..+|||+
T Consensus 183 ~~kp~I~iTmfGvT-----------Tp~V~-~~~~~Le~~G~Ev~VFHAtG~GG~aME~Li~~G~~~~VlDlTttEl~d~ 250 (403)
T PF06792_consen 183 EDKPLIGITMFGVT-----------TPCVD-AIRERLEEEGYEVLVFHATGTGGRAMERLIREGQFDGVLDLTTTELADE 250 (403)
T ss_pred CCCcEEEEECCCCc-----------HHHHH-HHHHHHHhcCCeEEEEcCCCCchHHHHHHHHcCCcEEEEECcHHHHHHH
Confidence 78999999985533 23443 367789999999999876543211 12222 2356665
Q ss_pred ECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcccccccc
Q 025574 125 YTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESF 182 (250)
Q Consensus 125 lpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~~l~~~ 182 (250)
+-||-... ..+-++.+.+++ +|-...|=++-+++ ||....+.++|
T Consensus 251 l~GGv~sa------gp~Rl~AA~~~G-----IP~Vvs~GalDmVn--Fg~~~tvPe~~ 295 (403)
T PF06792_consen 251 LFGGVLSA------GPDRLEAAARAG-----IPQVVSPGALDMVN--FGPPDTVPEKF 295 (403)
T ss_pred HhCCCCCC------CchHHHHHHHcC-----CCEEEecCccceec--cCCcccCCHhh
Confidence 22332110 113367777888 99999998887777 56543334444
No 290
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=45.43 E-value=86 Score=30.02 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=26.4
Q ss_pred HHHHHHcCCeEEEeec-CCChhhH----HHhcccCCEEEECCCCC
Q 025574 91 VKFVESAGARVIPLIY-NEPEDVL----FEKLELVNGVLYTGGWA 130 (250)
Q Consensus 91 v~~le~~G~~~v~i~~-~~~~~~l----~~~l~~~dgvIlpGG~~ 130 (250)
.+++++.|+.+..... ..+.+.+ .+.++++|-||++||-.
T Consensus 26 ~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGlg 70 (413)
T TIGR00200 26 ADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGLG 70 (413)
T ss_pred HHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 3589999998764332 2334434 33456789999999965
No 291
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=45.35 E-value=88 Score=27.16 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCeEE-EeecCCChhhHHHhcccCCEEEECCC
Q 025574 89 SYVKFVESAGARVI-PLIYNEPEDVLFEKLELVNGVLYTGG 128 (250)
Q Consensus 89 s~v~~le~~G~~~v-~i~~~~~~~~l~~~l~~~dgvIlpGG 128 (250)
...+++++.|.++- .+...++.+.+...++.+|.|++.+.
T Consensus 97 ~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV 137 (220)
T PRK08883 97 RTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSV 137 (220)
T ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEe
Confidence 46778999998774 44455678888888999999999543
No 292
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=44.78 E-value=1.4e+02 Score=25.26 Aligned_cols=43 Identities=7% Similarity=0.040 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChhh----HHHh-cccCCEEEECCC
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGG 128 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dgvIlpGG 128 (250)
+...+.+.+++.|..++......+.+. +... -.++||||+.+.
T Consensus 17 ~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~ 64 (268)
T cd06270 17 LLSGVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILHSK 64 (268)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 445677888999998887654333221 1221 247999999874
No 293
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=44.62 E-value=78 Score=24.55 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCC
Q 025574 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGW 129 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~ 129 (250)
...+.|++ |.++.... ..+.+++.+.++.+|+++..++.
T Consensus 10 ~~~~~l~~-~~~v~~~~-~~~~~~~~~~l~~~d~ii~~~~~ 48 (133)
T PF00389_consen 10 EEIERLEE-GFEVEFCD-SPSEEELAERLKDADAIIVGSGT 48 (133)
T ss_dssp HHHHHHHH-TSEEEEES-SSSHHHHHHHHTTESEEEESTTS
T ss_pred HHHHHHHC-CceEEEeC-CCCHHHHHHHhCCCeEEEEcCCC
Confidence 34567877 77666555 55677777888999999987776
No 294
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=43.70 E-value=1.7e+02 Score=25.88 Aligned_cols=61 Identities=10% Similarity=0.014 Sum_probs=35.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEEC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYT 126 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlp 126 (250)
++-.|+|++.-... .....-+-...+.++|++.|.+++.+..+........ ..++|.|+..
T Consensus 3 ~~~~v~~~~g~~~~------~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~-~~~~D~v~~~ 63 (304)
T PRK01372 3 MFGKVAVLMGGTSA------EREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLK-ELGFDRVFNA 63 (304)
T ss_pred CCcEEEEEeCCCCC------CceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhc-cCCCCEEEEe
Confidence 44468888732111 1122223456788999999999998865533222111 2367887765
No 295
>PRK00549 competence damage-inducible protein A; Provisional
Probab=43.63 E-value=93 Score=29.71 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=26.7
Q ss_pred HHHHHHcCCeEEEeec-CCChhhHH----HhcccCCEEEECCCCCC
Q 025574 91 VKFVESAGARVIPLIY-NEPEDVLF----EKLELVNGVLYTGGWAK 131 (250)
Q Consensus 91 v~~le~~G~~~v~i~~-~~~~~~l~----~~l~~~dgvIlpGG~~~ 131 (250)
.+.|++.|+++..+.. ..+.+.+. ...+++|-||++||-+.
T Consensus 26 ~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVItTGGlGp 71 (414)
T PRK00549 26 SEKLAELGIDVYHQTVVGDNPERLLSALEIAEERSDLIITTGGLGP 71 (414)
T ss_pred HHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccCCCEEEECCCCCC
Confidence 3579999997764332 23444443 33457899999998663
No 296
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.33 E-value=1.7e+02 Score=25.33 Aligned_cols=67 Identities=9% Similarity=-0.045 Sum_probs=37.8
Q ss_pred chhhHHHHHHHHHHcCCeEEEee-cCCChhh----HHHh-cccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCc
Q 025574 83 ASYIAASYVKFVESAGARVIPLI-YNEPEDV----LFEK-LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHF 156 (250)
Q Consensus 83 ~~~i~~s~v~~le~~G~~~v~i~-~~~~~~~----l~~~-l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~ 156 (250)
...+...+.+.+++.|..++.+. ...+.+. +... -.++||||+.+... . ..+..++.+.+++ +
T Consensus 14 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~~~--~----~~~~~i~~~~~~~-----i 82 (294)
T cd06316 14 SNAQVRGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPVDP--V----STAAAYKKVAEAG-----I 82 (294)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCc--h----hhhHHHHHHHHcC-----C
Confidence 34466667788999999887542 2222221 2221 24689999975321 1 1124456666666 7
Q ss_pred eEEc
Q 025574 157 PLYA 160 (250)
Q Consensus 157 PILG 160 (250)
|+..
T Consensus 83 PvV~ 86 (294)
T cd06316 83 KLVF 86 (294)
T ss_pred cEEE
Confidence 8654
No 297
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=42.90 E-value=1.6e+02 Score=26.00 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHH----Hhc-ccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLF----EKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~----~~l-~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
..+.+.+++.|..++......+.+... ..+ .++||||+.+... ......++.+.+.+ +|+..+
T Consensus 18 ~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~------~~~~~~l~~~~~~~-----iPvV~~ 85 (302)
T TIGR02634 18 DIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQNG------QVLSNAVQEAKDEG-----IKVVAY 85 (302)
T ss_pred HHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh------hHHHHHHHHHHHCC-----CeEEEe
Confidence 356678888999887765443332221 111 4689999976421 11224556666666 776544
No 298
>PRK13405 bchH magnesium chelatase subunit H; Provisional
Probab=42.72 E-value=90 Score=34.21 Aligned_cols=101 Identities=18% Similarity=0.233 Sum_probs=54.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC--ChhhHHHhc-----ccCCEEEECCCCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--PEDVLFEKL-----ELVNGVLYTGGWAK 131 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~--~~~~l~~~l-----~~~dgvIlpGG~~~ 131 (250)
.+|+|||+-....-- .....++. .+++.||+.|..|+++-... ....+.+.+ ..+|+||-.-|...
T Consensus 245 ~~p~Vgil~~r~~~~------~~d~~~~d-~lI~~lE~~G~~vipvf~~gl~~~~~v~~~~~~~~~~~vDaiI~~tgF~l 317 (1209)
T PRK13405 245 AKGTVGLLLMRSYVL------AGNTAHYD-GVIEALEARGLRVVPAFASGLDGRPAIEAYFMKDGRPTVDAVVSLTGFSL 317 (1209)
T ss_pred CCCeEEEEEehhhhh------cCCcHHHH-HHHHHHHHCCCeEEEEEecCccchHHHHHHHhccCCCCccEEEEcCcccc
Confidence 489999987654311 12344444 48899999999998875431 111233333 24788883222211
Q ss_pred -C-ccchHHHHHHHHHHHHhCCCCCCceEEc-ccchhHHHHHHh
Q 025574 132 -D-GLYYAIVEKVFKKILEKNDAGDHFPLYA-HCLGFELLTMII 172 (250)
Q Consensus 132 -~-~~~~~~~~~li~~~~~~~~~g~~~PILG-IClG~QlL~~~~ 172 (250)
. |.+.. .+...+...+.| +|++- +-+=+|-+....
T Consensus 318 ~ggpa~~~-~~~a~~~L~~ln-----VPvl~~~~l~~qt~~~W~ 355 (1209)
T PRK13405 318 VGGPAYND-SAAAEEILARLD-----VPYLAAHPLEFQTLEQWA 355 (1209)
T ss_pred cCCcccCc-chhHHHHHHHCC-----CCEEEEeecCCCCHHHHH
Confidence 0 11111 111223333557 99986 334567777664
No 299
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=42.67 E-value=1.5e+02 Score=25.25 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHcCCeEEEee-cCCChhhH----HHhc-ccCCEEEECCC
Q 025574 86 IAASYVKFVESAGARVIPLI-YNEPEDVL----FEKL-ELVNGVLYTGG 128 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~-~~~~~~~l----~~~l-~~~dgvIlpGG 128 (250)
+...+.+.+++.|..+.+.. ...+.+.. .... .++||+|+.+.
T Consensus 16 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 64 (271)
T cd06314 16 AEAGVKAAGKELGVDVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPI 64 (271)
T ss_pred HHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 44556678888999887653 22222211 1212 36999999864
No 300
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=42.54 E-value=1.7e+02 Score=25.70 Aligned_cols=81 Identities=16% Similarity=0.171 Sum_probs=45.9
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHH
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI 138 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~ 138 (250)
.+|.||+++..+....+...+.....+ ..+.+.|++. ..+..+... .+. +.+++|.||+.|-.. ++...
T Consensus 145 ~~~~V~~l~ghge~~~~~~~~~~~~~~--~~l~~~L~~~-y~V~~~~l~--~~~---IP~~~d~Lvi~~P~~---~ls~~ 213 (271)
T PF09822_consen 145 EKPKVYFLTGHGERGGGSMPNSQSTSY--SSLKSLLEKN-YDVEELNLA--NEE---IPDDADVLVIAGPKT---DLSEE 213 (271)
T ss_pred cCceEEEEccccccccccccccCcchH--HHHHHHHHhc-CceeecCCc--ccc---cCCCCCEEEEECCCC---CCCHH
Confidence 589999998665430000111122222 3467788888 888877653 222 236899999987654 23333
Q ss_pred HHHHHHHHHHhC
Q 025574 139 VEKVFKKILEKN 150 (250)
Q Consensus 139 ~~~li~~~~~~~ 150 (250)
....++..++++
T Consensus 214 e~~~l~~yl~~G 225 (271)
T PF09822_consen 214 ELYALDQYLMNG 225 (271)
T ss_pred HHHHHHHHHHcC
Confidence 334555555555
No 301
>PRK03673 hypothetical protein; Provisional
Probab=42.05 E-value=1.1e+02 Score=29.28 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=30.1
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEee-cCCChhhHHH----hcccCCEEEECCCCC
Q 025574 81 TNASYIAASYVKFVESAGARVIPLI-YNEPEDVLFE----KLELVNGVLYTGGWA 130 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~-~~~~~~~l~~----~l~~~dgvIlpGG~~ 130 (250)
.+..|++ +.+.+.|+.+.... ..++.+.+.+ .++++|-||++||-+
T Consensus 21 tN~~~la----~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlG 71 (396)
T PRK03673 21 TNAAWLA----DFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLG 71 (396)
T ss_pred hHHHHHH----HHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCC
Confidence 3445554 47999999875333 3345555543 345689999999965
No 302
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=41.96 E-value=60 Score=29.50 Aligned_cols=54 Identities=20% Similarity=0.325 Sum_probs=40.0
Q ss_pred hhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHH
Q 025574 110 EDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELL 168 (250)
Q Consensus 110 ~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL 168 (250)
.+.+++.+++.+.+++-.|-.-++.+.+...++++++.+++ +|+.==--|..++
T Consensus 92 v~~i~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~d-----vP~VIDaDGL~Lv 145 (306)
T KOG3974|consen 92 VDIIEKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKD-----VPLVIDADGLWLV 145 (306)
T ss_pred HhHHHHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCC-----CcEEEcCCceEeh
Confidence 33445568889999998887777888888889999999888 9987333444333
No 303
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=41.90 E-value=43 Score=29.83 Aligned_cols=68 Identities=12% Similarity=0.094 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChhhHH----HhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPEDVLF----EKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~l~----~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
..+.+.+..++.|.+++.++.... +++. .+.++.|.++++.... .......+++.+.+.+ +|++|.
T Consensus 148 ~~~~~~~~a~~~g~~l~~~~v~~~-~~~~~~~~~l~~~~da~~~~~~~~----~~~~~~~i~~~~~~~~-----iPv~~~ 217 (294)
T PF04392_consen 148 QIEQLRKAAKKLGIELVEIPVPSS-EDLEQALEALAEKVDALYLLPDNL----VDSNFEAILQLANEAK-----IPVFGS 217 (294)
T ss_dssp HHHHHHHHHHHTT-EEEEEEESSG-GGHHHHHHHHCTT-SEEEE-S-HH----HHHTHHHHHHHCCCTT-------EEES
T ss_pred HHHHHHHHHHHcCCEEEEEecCcH-hHHHHHHHHhhccCCEEEEECCcc----hHhHHHHHHHHHHhcC-----CCEEEC
Confidence 344566677788998887766543 3332 3345689988874432 2222334556555556 999997
Q ss_pred cc
Q 025574 162 CL 163 (250)
Q Consensus 162 Cl 163 (250)
--
T Consensus 218 ~~ 219 (294)
T PF04392_consen 218 SD 219 (294)
T ss_dssp SH
T ss_pred CH
Confidence 63
No 304
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=41.86 E-value=1.9e+02 Score=24.71 Aligned_cols=43 Identities=12% Similarity=-0.039 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHcCCeEEEeecCC--Chh----hHHHhc-ccCCEEEECCC
Q 025574 86 IAASYVKFVESAGARVIPLIYNE--PED----VLFEKL-ELVNGVLYTGG 128 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~--~~~----~l~~~l-~~~dgvIlpGG 128 (250)
+...+.+.+++.|..++...... +.+ .+...+ .++||||+.+.
T Consensus 17 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~ 66 (268)
T cd06306 17 VNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAV 66 (268)
T ss_pred HHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 44566778889999988765332 221 222222 47999999864
No 305
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=41.70 E-value=2.1e+02 Score=25.37 Aligned_cols=62 Identities=16% Similarity=0.118 Sum_probs=33.9
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC--hhhH-HHhc-ccCCEEEECCCCC
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--EDVL-FEKL-ELVNGVLYTGGWA 130 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~--~~~l-~~~l-~~~dgvIlpGG~~ 130 (250)
.++|+.+|..+.. ..... .+.+.+.+++.|..+........ .+.+ .... +.+|.||.-||-.
T Consensus 3 ~~~ii~Np~sg~~------~~~~~-~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDG 68 (293)
T TIGR00147 3 EAPAILNPTAGKS------NDNKP-LREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDG 68 (293)
T ss_pred eEEEEECCCccch------hhHHH-HHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCC
Confidence 5677777743211 11222 23467788899987765543322 1111 1111 3478888888855
No 306
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=41.61 E-value=1.5e+02 Score=29.85 Aligned_cols=78 Identities=19% Similarity=0.245 Sum_probs=46.8
Q ss_pred CCCCCCCCC-CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC------------ChhhHH--
Q 025574 50 CPVPDSKLN-YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE------------PEDVLF-- 114 (250)
Q Consensus 50 ~~~~~~~~~-~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~------------~~~~l~-- 114 (250)
+.-.+.... .||+|||.....+..++ ..+..-+++...+.++++|+.+..++... +.|.+-
T Consensus 36 ~G~~~ed~~~~KP~IgI~ns~se~~Pc----h~hl~~la~~vk~gI~~aGG~p~ef~ti~v~d~~~~~~~l~sRelIAd~ 111 (596)
T PRK13017 36 YGLTREELQSGKPIIGIAQTGSDLSPC----NRHHLELAERVKEGIRDAGGIPMEFPVHPIQETGKRPTAALDRNLAYLG 111 (596)
T ss_pred cCCChHHhccCCCEEEEEecccCCcCc----hhhHHHHHHHHHHHHHHcCCeeEecccccccccCCCcccccCHHHHHHH
Confidence 444455554 79999998877554332 12333345556778999999877654321 111111
Q ss_pred --Hh--cccCCEEEECCCCCC
Q 025574 115 --EK--LELVNGVLYTGGWAK 131 (250)
Q Consensus 115 --~~--l~~~dgvIlpGG~~~ 131 (250)
.. -..+||+|+-||-+.
T Consensus 112 iE~~~~a~~~Dg~V~i~gCDK 132 (596)
T PRK13017 112 LVEILYGYPLDGVVLTTGCDK 132 (596)
T ss_pred HHHHHhcCCcceEEEeccCCC
Confidence 11 235789999888884
No 307
>PRK09739 hypothetical protein; Provisional
Probab=41.39 E-value=1.7e+02 Score=24.51 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=26.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEee
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI 105 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~ 105 (250)
+..++-|.++|..+ ....-+.+.+++.+++.|.++..+.
T Consensus 3 mmkiliI~~sp~~~--------s~s~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 3 SMRIYLVWAHPRHD--------SLTAKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred CceEEEEEcCCCCC--------CcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 34577788888531 3345567778888988888777664
No 308
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=41.34 E-value=26 Score=31.22 Aligned_cols=37 Identities=16% Similarity=0.339 Sum_probs=24.6
Q ss_pred cccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 117 LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 117 l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
++++|.||.-||-+ .+. ...+.+...+ +|||||-.|.
T Consensus 23 ~~~~Dlvi~iGGDG---TlL----~a~~~~~~~~-----~PvlGIN~G~ 59 (246)
T PRK04761 23 IEEADVIVALGGDG---FML----QTLHRYMNSG-----KPVYGMNRGS 59 (246)
T ss_pred cccCCEEEEECCCH---HHH----HHHHHhcCCC-----CeEEEEeCCC
Confidence 34579999999955 222 3334443445 9999999885
No 309
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=40.97 E-value=2.1e+02 Score=23.97 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCC-hhh----HHHhc-ccCCEEEECCCC
Q 025574 86 IAASYVKFVESAGARVIPLIYNEP-EDV----LFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~-~~~----l~~~l-~~~dgvIlpGG~ 129 (250)
+.....+.+++.|..+.+...... .+. +.... .++||+|+.+..
T Consensus 17 ~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 66 (264)
T cd01574 17 TLAAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAPL 66 (264)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 445677788888988877654322 111 11222 369999997653
No 310
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.91 E-value=1e+02 Score=26.17 Aligned_cols=43 Identities=23% Similarity=0.169 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChhhH----HHh-cccCCEEEECCC
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGG 128 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dgvIlpGG 128 (250)
+...+.+.+++.|..++......+.+.. ... -.++||||+.+-
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (263)
T cd06280 17 VSRAVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPT 64 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4556778888999998776544333321 111 135899999874
No 311
>PRK00170 azoreductase; Reviewed
Probab=40.45 E-value=1.4e+02 Score=24.63 Aligned_cols=40 Identities=10% Similarity=0.052 Sum_probs=26.7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHc--CCeEEEeec
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA--GARVIPLIY 106 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~--G~~~v~i~~ 106 (250)
..++.|.++|... .....-+++.+++.+++. |.++..+..
T Consensus 2 mkil~i~gSpr~~-------~s~s~~l~~~~~~~l~~~~~~~~v~~~dL 43 (201)
T PRK00170 2 SKVLVIKSSILGD-------YSQSMQLGDAFIEAYKEAHPDDEVTVRDL 43 (201)
T ss_pred CeEEEEecCCCCC-------CcHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 3477888888542 123445667788888887 887776654
No 312
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.37 E-value=1.2e+02 Score=25.80 Aligned_cols=44 Identities=5% Similarity=-0.107 Sum_probs=25.5
Q ss_pred chhhHHHHHHHHHH-cCCeEEEeecCCChhhHHHhc-ccCCEEEECC
Q 025574 83 ASYIAASYVKFVES-AGARVIPLIYNEPEDVLFEKL-ELVNGVLYTG 127 (250)
Q Consensus 83 ~~~i~~s~v~~le~-~G~~~v~i~~~~~~~~l~~~l-~~~dgvIlpG 127 (250)
..-+...+.+++++ .|..++....+ ..+.+..+. .++||+|+.+
T Consensus 13 ~~~~~~gi~~~~~~~~g~~~~~~~~~-~~~~~~~l~~~~vdGiI~~~ 58 (265)
T cd01543 13 GRGVLRGIARYAREHGPWSIYLEPRG-LQEPLRWLKDWQGDGIIARI 58 (265)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEeccc-chhhhhhccccccceEEEEC
Confidence 34456677888888 67766553322 122222222 3689999975
No 313
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=40.28 E-value=1.4e+02 Score=23.00 Aligned_cols=64 Identities=11% Similarity=0.050 Sum_probs=37.8
Q ss_pred HHHHHHH-cCCeEEEeec--CCChhhHHHhc--ccCCEEEECCCC-CCCccchHHHHHHHHHHHHhCCCCCCceEE
Q 025574 90 YVKFVES-AGARVIPLIY--NEPEDVLFEKL--ELVNGVLYTGGW-AKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 90 ~v~~le~-~G~~~v~i~~--~~~~~~l~~~l--~~~dgvIlpGG~-~~~~~~~~~~~~li~~~~~~~~~g~~~PIL 159 (250)
-.++|++ .|..+..++. .....++.+.+ .++|.||.+..+ +..+ .......+-+.+++.+ +|++
T Consensus 36 Ta~~L~~~~Gi~v~~vk~~~~~g~~~i~~~i~~g~i~~VInt~~~~~~~~-~~~dg~~iRr~a~~~~-----Ip~~ 105 (115)
T cd01422 36 TGLLIQEATGLTVNRMKSGPLGGDQQIGALIAEGEIDAVIFFRDPLTAQP-HEPDVKALLRLCDVYN-----IPLA 105 (115)
T ss_pred HHHHHHHhhCCcEEEEecCCCCchhHHHHHHHcCceeEEEEcCCCCCCCc-ccccHHHHHHHHHHcC-----CCEE
Confidence 4567887 7877766543 22223333333 358999998764 3222 1122346778888888 9986
No 314
>PLN03241 magnesium chelatase subunit H; Provisional
Probab=40.26 E-value=1.1e+02 Score=33.94 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=28.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeec
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY 106 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~ 106 (250)
.+|+|||+.....-- . ...++. .+++.||+.|..|+++-.
T Consensus 315 ~~p~Vgil~yrs~~~------~-~~~~id-alI~~LE~~G~~vipvf~ 354 (1353)
T PLN03241 315 DAPRVAILLYRKHVI------T-KQPYLA-DLVRQMEESGVLPVPIFI 354 (1353)
T ss_pred CCCEEEEEecchhhh------c-CChHHH-HHHHHHHHCCCeEEEEEe
Confidence 589999998664311 1 234544 488999999999988754
No 315
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=40.17 E-value=1.1e+02 Score=27.35 Aligned_cols=46 Identities=26% Similarity=0.384 Sum_probs=31.1
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeec-CCChhhHH----HhcccCCEEEECCCCC
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIY-NEPEDVLF----EKLELVNGVLYTGGWA 130 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~----~~l~~~dgvIlpGG~~ 130 (250)
.+.+|++ +.|.+.|..+..+.+ ..+++.+. ...+++|-||++||-+
T Consensus 21 tNa~~la----~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLG 71 (255)
T COG1058 21 TNAAFLA----DELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLG 71 (255)
T ss_pred chHHHHH----HHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 5667765 589999987764443 23444443 3456799999999965
No 316
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=39.74 E-value=1.8e+02 Score=26.89 Aligned_cols=67 Identities=16% Similarity=0.099 Sum_probs=38.0
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecC-CChhhHHHhc-----ccCCEEEECCCCCCCc
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN-EPEDVLFEKL-----ELVNGVLYTGGWAKDG 133 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~-~~~~~l~~~l-----~~~dgvIlpGG~~~~~ 133 (250)
.++|++-......|+ ...-....+..+|++.|+.++....- .+.+.+.+.+ +.+|-||.+||-+..+
T Consensus 157 ~~aIltvsde~~~G~-----i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg~g~ 229 (312)
T PRK03604 157 SAAVLVLSDSIAAGT-----KEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTGLGP 229 (312)
T ss_pred EEEEEEECCcCCCCc-----EEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCCCCC
Confidence 677876443322222 12222233556899999988755432 3444443322 4589999999977543
No 317
>PRK06851 hypothetical protein; Provisional
Probab=39.07 E-value=88 Score=29.55 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=36.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTG 127 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpG 127 (250)
.+.++-|...|+. +.+.+.+.+.+.+.+.|..+..+....++ +.+|||++|+
T Consensus 29 ~~~~~il~G~pGt----------GKStl~~~i~~~~~~~g~~Ve~~~~~~d~-------~slDgviip~ 80 (367)
T PRK06851 29 ANRIFILKGGPGT----------GKSTLMKKIGEEFLEKGYDVEFLHCSSDN-------DSLDGVIIPE 80 (367)
T ss_pred cceEEEEECCCCC----------CHHHHHHHHHHHHHHcCCeEEEEEcCCCC-------CceeeEEecC
Confidence 4566777776653 45666677888888889888877655443 3679999987
No 318
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.80 E-value=1.6e+02 Score=25.35 Aligned_cols=44 Identities=5% Similarity=-0.350 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHcCCeEEEeecCCChhhHH----Hhc-ccCCEEEECCC
Q 025574 85 YIAASYVKFVESAGARVIPLIYNEPEDVLF----EKL-ELVNGVLYTGG 128 (250)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~~~~~l~----~~l-~~~dgvIlpGG 128 (250)
-+...+.+.+++.|..+.......+.+... ..+ .++||||+.+.
T Consensus 16 ~~~~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~ 64 (272)
T cd06313 16 QGKQAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPL 64 (272)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 345567778888999887765443333221 222 45899999653
No 319
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=38.70 E-value=70 Score=25.34 Aligned_cols=76 Identities=20% Similarity=0.130 Sum_probs=42.5
Q ss_pred HHHHHHHcCCeEEEee-cCCChhhHHH----hcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccch
Q 025574 90 YVKFVESAGARVIPLI-YNEPEDVLFE----KLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~-~~~~~~~l~~----~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG 164 (250)
+.++|++.|+++.... ...+.+.+.+ .+++.|-||.+||-+..+.. ...+.++.+.+ .++-|.-.=
T Consensus 22 l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~g~~~~D--~t~~a~~~~~~-------~~l~~~~~~ 92 (144)
T PF00994_consen 22 LAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGTGPGPDD--VTPEALAEAGG-------RELPGFEEL 92 (144)
T ss_dssp HHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSSSSSTTC--HHHHHHHHHSS-------EE-HHHHHH
T ss_pred HHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCcCcccCC--cccHHHHHhcC-------cccccChHH
Confidence 4468899999776332 2234555543 34578999999998753321 12233444322 455555555
Q ss_pred hHHHHHHhcC
Q 025574 165 FELLTMIISK 174 (250)
Q Consensus 165 ~QlL~~~~GG 174 (250)
++-+....|.
T Consensus 93 ~~~~~~~pg~ 102 (144)
T PF00994_consen 93 FRGVSMRPGK 102 (144)
T ss_dssp HHHHHHHSTT
T ss_pred HHHHHHHhhc
Confidence 5556655554
No 320
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=38.54 E-value=2.2e+02 Score=23.23 Aligned_cols=76 Identities=13% Similarity=0.221 Sum_probs=41.2
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC-C-------------hhhHHHhcccCCEEEECC
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-P-------------EDVLFEKLELVNGVLYTG 127 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~-~-------------~~~l~~~l~~~dgvIlpG 127 (250)
+++|.+.|..+ ....-+.+.+++.+++.|.++..+.... + .+.+.+.+..+|+||+.
T Consensus 2 il~I~gS~r~~--------S~t~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~- 72 (171)
T TIGR03567 2 VLTLSGSPSTP--------SRSSALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVA- 72 (171)
T ss_pred EEEEECCCCCC--------ChHHHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEE-
Confidence 56777777531 2344466667778888888776664321 1 12233456678998874
Q ss_pred CCCCCccchHHHHHHHHHH
Q 025574 128 GWAKDGLYYAIVEKVFKKI 146 (250)
Q Consensus 128 G~~~~~~~~~~~~~li~~~ 146 (250)
.|.+...+....+.+++++
T Consensus 73 sP~Y~~sip~~LK~~iD~~ 91 (171)
T TIGR03567 73 TPVYKASYSGVLKALLDLL 91 (171)
T ss_pred CCcccCCCCHHHHHHHHhC
Confidence 2322222333444455444
No 321
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=38.47 E-value=2.2e+02 Score=29.11 Aligned_cols=74 Identities=18% Similarity=0.154 Sum_probs=35.6
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHc-CCeEEEeec-CCChhhHHHhc------ccCCEEEECCCC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIY-NEPEDVLFEKL------ELVNGVLYTGGW 129 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~-G~~~v~i~~-~~~~~~l~~~l------~~~dgvIlpGG~ 129 (250)
+.+|.++|++--..-..+.. .+.....+.+-+-...+.. |++++.... ..+.+.+.+.+ +.+|-||.+||-
T Consensus 456 ~~~~rvaIIt~sde~~~~~~-~D~sg~~~~~il~~n~~~l~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVItTGGt 534 (659)
T PLN02699 456 NPEVKVAILTVSDTVSSGAG-PDRSGPRAVSVVNSSSEKLGGAKVVATAVVPDDVEKIKDVLQKWSDIDRMDLILTLGGT 534 (659)
T ss_pred cCCcEEEEEEECCcccCCCc-ccccchHHHHHHHhhhhhcCCcEEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 56799999764432111111 0000111111111123334 887764432 23444443322 458999999997
Q ss_pred CCC
Q 025574 130 AKD 132 (250)
Q Consensus 130 ~~~ 132 (250)
...
T Consensus 535 s~g 537 (659)
T PLN02699 535 GFT 537 (659)
T ss_pred cCC
Confidence 753
No 322
>PRK03670 competence damage-inducible protein A; Provisional
Probab=38.42 E-value=1.4e+02 Score=26.64 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=25.5
Q ss_pred HHHHHHcCCeEEEeec-CCChhhHHHh----cc-cCCEEEECCCCC
Q 025574 91 VKFVESAGARVIPLIY-NEPEDVLFEK----LE-LVNGVLYTGGWA 130 (250)
Q Consensus 91 v~~le~~G~~~v~i~~-~~~~~~l~~~----l~-~~dgvIlpGG~~ 130 (250)
.++|++.|+++..... ..+.+.+.+. ++ .+|-||++||-+
T Consensus 26 a~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlG 71 (252)
T PRK03670 26 AQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLG 71 (252)
T ss_pred HHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCcc
Confidence 3579999998764332 2344444332 33 369999999965
No 323
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.33 E-value=1.2e+02 Score=26.23 Aligned_cols=95 Identities=13% Similarity=0.175 Sum_probs=55.6
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC--hhhHHHhcccCCEEEECCCCCCCccc
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--EDVLFEKLELVNGVLYTGGWAKDGLY 135 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~--~~~l~~~l~~~dgvIlpGG~~~~~~~ 135 (250)
...|+|.|+..... .. ....++.+.+.|.+.+.+.++.+ .+.+...-++++.+++--|...+..-
T Consensus 2 ~~~~vv~Vir~~~~-----------~~--a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~ 68 (201)
T PRK06015 2 KLQPVIPVLLIDDV-----------EH--AVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQ 68 (201)
T ss_pred CCCCEEEEEEcCCH-----------HH--HHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHH
Confidence 35688888764421 11 23477899999999999888753 22333333345665554454433322
Q ss_pred hHH--------------HHHHHHHHHHhCCCCCCceEEcccchhHHHHH
Q 025574 136 YAI--------------VEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (250)
Q Consensus 136 ~~~--------------~~~li~~~~~~~~~g~~~PILGIClG~QlL~~ 170 (250)
.+. .+++++.+.+.+ +|++==|+=---+..
T Consensus 69 a~~ai~aGA~FivSP~~~~~vi~~a~~~~-----i~~iPG~~TptEi~~ 112 (201)
T PRK06015 69 FEDAAKAGSRFIVSPGTTQELLAAANDSD-----VPLLPGAATPSEVMA 112 (201)
T ss_pred HHHHHHcCCCEEECCCCCHHHHHHHHHcC-----CCEeCCCCCHHHHHH
Confidence 211 258889998888 888754444333333
No 324
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=38.02 E-value=1.5e+02 Score=23.23 Aligned_cols=78 Identities=9% Similarity=-0.056 Sum_probs=38.0
Q ss_pred CcchhhHHHHHHHHHHcCCeEEE-eecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEE
Q 025574 81 TNASYIAASYVKFVESAGARVIP-LIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~-i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PIL 159 (250)
+....++..+.+.++..|..+.+ .... +.+.....+.++|.|+|.-..-....+......+++.... ++..+=++
T Consensus 12 GnTe~iA~~ia~~l~~~g~~v~~~~~~~-~~~~~~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~---~~k~~avf 87 (140)
T TIGR01754 12 GNTEEVAFMIQDYLQKDGHEVDILHRIG-TLADAPLDPENYDLVFLGTWTWERGRTPDEMKDFIAELGY---KPSNVAIF 87 (140)
T ss_pred ChHHHHHHHHHHHHhhCCeeEEeccccc-ccccCcCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcc---cCCEEEEE
Confidence 34667787788888888877652 2211 1011111245678877754311111222223344554422 23335567
Q ss_pred ccc
Q 025574 160 AHC 162 (250)
Q Consensus 160 GIC 162 (250)
|.|
T Consensus 88 gtg 90 (140)
T TIGR01754 88 GTG 90 (140)
T ss_pred EcC
Confidence 766
No 325
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=37.99 E-value=12 Score=30.76 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=26.3
Q ss_pred CCEEEECCCCCCCc--cchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHH
Q 025574 120 VNGVLYTGGWAKDG--LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (250)
Q Consensus 120 ~dgvIlpGG~~~~~--~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~ 170 (250)
+|.|++.||-++.. .-.+...+++++... +.+.||| ||-|..
T Consensus 81 ~D~vVlmGGLAMP~~~v~~e~v~~li~ki~~-------~~iiGiC--Fms~F~ 124 (147)
T PF09897_consen 81 PDVVVLMGGLAMPKSGVTPEDVNELIKKISP-------KKIIGIC--FMSMFE 124 (147)
T ss_dssp EEEEEEEGGGGSTTTS--HHHHHHHHHHHEE-------EEEEEEE--ETTHHH
T ss_pred CCEEEEEcccccCCCCCCHHHHHHHHHHhCc-------CCEEEEe--hHHHHH
Confidence 78999999987521 222334566776633 4499999 444444
No 326
>PRK11914 diacylglycerol kinase; Reviewed
Probab=37.25 E-value=2.3e+02 Score=25.40 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=33.6
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHh-----cccCCEEEECCCCC
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEK-----LELVNGVLYTGGWA 130 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~-----l~~~dgvIlpGG~~ 130 (250)
.+.|+-+|..+. ....-.....++.+++.|..+.++.... .....++ .+.+|.||+.||-.
T Consensus 10 ~~~iI~NP~sG~-------g~~~~~~~~~~~~l~~~g~~~~~~~t~~-~~~~~~~a~~~~~~~~d~vvv~GGDG 75 (306)
T PRK11914 10 KVTVLTNPLSGH-------GAAPHAAERAIARLHHRGVDVVEIVGTD-AHDARHLVAAALAKGTDALVVVGGDG 75 (306)
T ss_pred eEEEEECCCCCC-------CcHHHHHHHHHHHHHHcCCeEEEEEeCC-HHHHHHHHHHHHhcCCCEEEEECCch
Confidence 466677775422 1112223346778999998765544322 2222222 23568899888854
No 327
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.12 E-value=31 Score=30.96 Aligned_cols=36 Identities=8% Similarity=0.049 Sum_probs=23.6
Q ss_pred ccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 118 ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 118 ~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
+.+|.+|.-||-+ .+. ...+.+...+ +||+||-.|.
T Consensus 32 ~~~D~vi~iGGDG---T~L----~a~~~~~~~~-----iPilGIN~G~ 67 (259)
T PRK00561 32 DGADYLFVLGGDG---FFV----STAANYNCAG-----CKVVGINTGH 67 (259)
T ss_pred CCCCEEEEECCcH---HHH----HHHHHhcCCC-----CcEEEEecCC
Confidence 4579999999955 222 2233333345 9999999874
No 328
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=36.76 E-value=1.5e+02 Score=29.84 Aligned_cols=78 Identities=23% Similarity=0.240 Sum_probs=46.5
Q ss_pred CCCCCCCCCCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC------------ChhhHH---
Q 025574 50 CPVPDSKLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE------------PEDVLF--- 114 (250)
Q Consensus 50 ~~~~~~~~~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~------------~~~~l~--- 114 (250)
+.-.+.....||+|||.....+..++ +.+..-+++...+.++++|+.+..++... +.|.+-
T Consensus 28 ~G~~~ed~~~kP~IgI~ns~se~~Pc----h~hl~~l~~~vk~gi~~aGg~p~ef~ti~v~Dgi~~g~sL~sRelIAdsi 103 (571)
T PRK06131 28 QGYPDELFDGRPIIGICNTWSDLNPC----NAHFRQLAERVKRGVLEAGGFPVEFPVISLGESFLRPTAMLYRNLAAMDV 103 (571)
T ss_pred cCCChHHhccCCEEEEecccccCcCc----hhhHHHHHHHHHHHHHHcCCEEEecCccCccccccCccccccHHHHHHHH
Confidence 44445555559999999877654332 23333455567778999999877665322 111111
Q ss_pred -H--hcccCCEEEECCCCCC
Q 025574 115 -E--KLELVNGVLYTGGWAK 131 (250)
Q Consensus 115 -~--~l~~~dgvIlpGG~~~ 131 (250)
. .-..+||+|+-||-+.
T Consensus 104 E~~~~a~~~Dg~v~i~~CDK 123 (571)
T PRK06131 104 EEMIRGYPIDGVVLLGGCDK 123 (571)
T ss_pred HHHHhcCCcceEEEEeeCCC
Confidence 1 1235788888888774
No 329
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=36.49 E-value=2.2e+02 Score=25.05 Aligned_cols=65 Identities=11% Similarity=0.013 Sum_probs=37.0
Q ss_pred hHHHHHHHHHH--cCCeEEEeecCCChh----hHHHhc-ccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceE
Q 025574 86 IAASYVKFVES--AGARVIPLIYNEPED----VLFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (250)
Q Consensus 86 i~~s~v~~le~--~G~~~v~i~~~~~~~----~l~~~l-~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PI 158 (250)
+...+.+.+++ .|..+.......+.+ .+...+ .++||+|+.+... . .....++.+.+.+ +||
T Consensus 17 ~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~---~---~~~~~~~~~~~~g-----iPv 85 (303)
T cd01539 17 VRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDP---T---AAQTVINKAKQKN-----IPV 85 (303)
T ss_pred HHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCch---h---hHHHHHHHHHHCC-----CCE
Confidence 44556677787 677776665443332 222222 4799999965321 1 1234566666666 887
Q ss_pred Ecc
Q 025574 159 YAH 161 (250)
Q Consensus 159 LGI 161 (250)
.-+
T Consensus 86 V~~ 88 (303)
T cd01539 86 IFF 88 (303)
T ss_pred EEe
Confidence 543
No 330
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=36.40 E-value=1.6e+02 Score=29.64 Aligned_cols=100 Identities=18% Similarity=0.172 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC------------ChhhH----
Q 025574 50 CPVPDSKLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE------------PEDVL---- 113 (250)
Q Consensus 50 ~~~~~~~~~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~------------~~~~l---- 113 (250)
+.-++.....||+|||.....+..++ ..+-.-+++...+.++++|+.+..++... ..|.+
T Consensus 32 ~G~~~~d~~~KP~IgI~ns~se~~Pc----h~hL~~la~~Vk~gv~~aGG~P~ef~ti~v~Dgi~~g~sl~~RelIAdsi 107 (577)
T PRK13016 32 MGYAPEDFDGKPVIAILNTWSDANPC----HGHFRERVEDVKRGVLQAGGFPLELPALSLSENFVKPTTMLYRNLLAMET 107 (577)
T ss_pred cCCCHHHHhcCCEEEEEecccCCcCc----hhhHHHHHHHHHHHHHHcCCeeEecccccCcccccCCcccccHHHHHHHH
Confidence 33444445479999999877654432 23333456667778999999876654321 11111
Q ss_pred HH--hcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccch
Q 025574 114 FE--KLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (250)
Q Consensus 114 ~~--~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG 164 (250)
+. .-..+||+|+-+|-+..- ...+-.+...| +|-+=++=|
T Consensus 108 E~~~~a~~~Dg~V~l~~CDK~~------Pg~lMaaarln-----iPsI~v~GG 149 (577)
T PRK13016 108 EELIRSHPVDGAVLMGGCDKTT------PGLVMGAISMG-----LPMIYLPAG 149 (577)
T ss_pred HHHHhcCCccceEEeccCCCCc------HHHHHHHHhcC-----CCEEEEecC
Confidence 11 123578888888887421 12233344556 776655444
No 331
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.27 E-value=58 Score=27.55 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=35.6
Q ss_pred ccCCEEEECCCCCCCccchH------------HHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcC
Q 025574 118 ELVNGVLYTGGWAKDGLYYA------------IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISK 174 (250)
Q Consensus 118 ~~~dgvIlpGG~~~~~~~~~------------~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG 174 (250)
+.+|++|+|||........+ ....+.+...+.+ +|+-=||..=-++..++|.
T Consensus 84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~ag-----KP~G~iCIaP~m~pki~g~ 147 (217)
T COG3155 84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAG-----KPLGFMCIAPAMLPKIFGF 147 (217)
T ss_pred HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhC-----CCceEEEecHHHHHHHcCC
Confidence 45799999999762111111 1124455555666 9999999999999999875
No 332
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=36.25 E-value=13 Score=23.80 Aligned_cols=15 Identities=13% Similarity=0.394 Sum_probs=10.3
Q ss_pred EEcccchhHHHHHHh
Q 025574 158 LYAHCLGFELLTMII 172 (250)
Q Consensus 158 ILGIClG~QlL~~~~ 172 (250)
.-|-|.|.|+|..+-
T Consensus 32 tagacfgaqimvaak 46 (48)
T PF09075_consen 32 TAGACFGAQIMVAAK 46 (48)
T ss_dssp S--TTTTTHHHHTTT
T ss_pred ccccccchhhhhhcc
Confidence 467899999997543
No 333
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=35.66 E-value=1.7e+02 Score=25.64 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=29.7
Q ss_pred HHHHHHHHcCCeE-EEeecCCChhhHHHhcccCCEEEECC
Q 025574 89 SYVKFVESAGARV-IPLIYNEPEDVLFEKLELVNGVLYTG 127 (250)
Q Consensus 89 s~v~~le~~G~~~-v~i~~~~~~~~l~~~l~~~dgvIlpG 127 (250)
..++.++++|.++ +.+...++.+.+.+.++.+|.|++..
T Consensus 99 ~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMs 138 (229)
T PRK09722 99 RLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMT 138 (229)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEE
Confidence 3667888899877 44555567888888899999998854
No 334
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=35.39 E-value=2.3e+02 Score=28.77 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=28.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEee
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI 105 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~ 105 (250)
.||+|||.....+..++ +.+..-+++...+.++++|+.+..++
T Consensus 32 ~kP~IgI~ns~~e~~pc----h~hl~~la~~vk~gi~~aGG~p~ef~ 74 (615)
T PRK12448 32 GKPIIAVVNSFTQFVPG----HVHLKDLGQLVAREIEAAGGVAKEFN 74 (615)
T ss_pred CCCEEEEEeccccCcCc----hhhHHHHHHHHHHHHHHcCCeeeEec
Confidence 59999999877554332 12222345556678899998777664
No 335
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=34.30 E-value=60 Score=29.33 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=31.5
Q ss_pred EEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHH
Q 025574 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (250)
Q Consensus 122 gvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~ 170 (250)
||+.+||+. |.+-.....+++.+...+ .-++|+..|+.=|..
T Consensus 4 ~Il~sGG~a--pG~Na~i~~~v~~a~~~g-----~~v~g~~~G~~GL~~ 45 (282)
T PF00365_consen 4 AILTSGGDA--PGMNAAIRGVVRYAIRRG-----WEVYGIRNGFEGLLN 45 (282)
T ss_dssp EEEEESS----TTHHHHHHHHHHHHHHTT-----SEEEEETTHHHHHHH
T ss_pred EEEecCCCc--hhhhHHHHHHHHHHHhcC-----CEEEEEEccCcccee
Confidence 677788876 555555668888887777 889999999987765
No 336
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=34.30 E-value=95 Score=23.92 Aligned_cols=62 Identities=11% Similarity=0.219 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhC
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~ 150 (250)
++...++.+++.|.+++.+..+. +......+.+|.+++-|+......| -..+.+++.+.+.+
T Consensus 13 ia~r~~ra~r~~Gi~tv~v~s~~--d~~s~~~~~ad~~~~~~~~~~~~~y-l~~e~I~~ia~~~g 74 (110)
T PF00289_consen 13 IAVRIIRALRELGIETVAVNSNP--DTVSTHVDMADEAYFEPPGPSPESY-LNIEAIIDIARKEG 74 (110)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEGG--GTTGHHHHHSSEEEEEESSSGGGTT-TSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCcceeccCch--hcccccccccccceecCcchhhhhh-ccHHHHhhHhhhhc
Confidence 36678899999999999886543 3222335678877766643322233 34556777665543
No 337
>PRK05568 flavodoxin; Provisional
Probab=33.82 E-value=1e+02 Score=23.96 Aligned_cols=43 Identities=19% Similarity=0.047 Sum_probs=30.4
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEEC
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYT 126 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlp 126 (250)
+....++..+.+.+++.|..+.++....... . .+..+|+|+|-
T Consensus 13 GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~--~-~~~~~d~iilg 55 (142)
T PRK05568 13 GNTEAMANLIAEGAKENGAEVKLLNVSEASV--D-DVKGADVVALG 55 (142)
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEECCCCCH--H-HHHhCCEEEEE
Confidence 4567788888888889999888777654321 1 36678987774
No 338
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=33.68 E-value=1.8e+02 Score=25.54 Aligned_cols=62 Identities=15% Similarity=0.121 Sum_probs=35.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhH----HHhc-ccCCEEEECCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGG 128 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dgvIlpGG 128 (250)
...+||++....+ + ....-+.....+.+++.|..+.......+.+.. .... .++||+|+.+.
T Consensus 58 ~~~~Ig~i~~~~~-------~-~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdGvIi~~~ 124 (311)
T TIGR02405 58 SDKVVAVIVSRLD-------S-PSENLAVSGMLPVFYTAGYDPIIMESQFSPQLTNEHLSVLQKRNVDGVILFGF 124 (311)
T ss_pred CCCEEEEEeCCcc-------c-ccHHHHHHHHHHHHHHCCCeEEEecCCCChHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4468999873211 1 112234556677888899988776543333322 1111 35899999764
No 339
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=33.40 E-value=2.2e+02 Score=24.99 Aligned_cols=63 Identities=14% Similarity=0.070 Sum_probs=37.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~ 129 (250)
...+||++..... ......+...+.+.+++.|..+.......+.+. +.... .++||||+.+..
T Consensus 55 ~~~~Igvi~~~~~--------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 122 (327)
T PRK10423 55 QTRTIGMLITAST--------NPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTE 122 (327)
T ss_pred CCCeEEEEeCCCC--------CCcHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4468999874321 122334556677888889998776554333222 12222 369999998654
No 340
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=33.35 E-value=1.1e+02 Score=29.07 Aligned_cols=88 Identities=18% Similarity=0.226 Sum_probs=46.8
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHc--CCeEEEeecCC----ChhhHHHh---ccc--CCEEEE-CC
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA--GARVIPLIYNE----PEDVLFEK---LEL--VNGVLY-TG 127 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~--G~~~v~i~~~~----~~~~l~~~---l~~--~dgvIl-pG 127 (250)
-..|||+|.+.... ...+.+-+++. ++++...|..- ....+..- ++. +|.||+ =|
T Consensus 135 p~~I~viTs~~gAa-------------~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RG 201 (438)
T PRK00286 135 PKRIGVITSPTGAA-------------IRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARG 201 (438)
T ss_pred CCEEEEEeCCccHH-------------HHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 45899999874311 12344445443 34555544321 12222221 222 576666 46
Q ss_pred CCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhH
Q 025574 128 GWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (250)
Q Consensus 128 G~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~Q 166 (250)
|++...-|.-..+.+.+.+.+.. +||+ .-.||+
T Consensus 202 GGS~eDL~~Fn~e~v~~ai~~~~-----~Pvi-s~IGHE 234 (438)
T PRK00286 202 GGSLEDLWAFNDEAVARAIAASR-----IPVI-SAVGHE 234 (438)
T ss_pred CCCHHHhhccCcHHHHHHHHcCC-----CCEE-EeccCC
Confidence 66654433323457888888888 9997 344554
No 341
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=32.26 E-value=2.2e+02 Score=26.69 Aligned_cols=80 Identities=5% Similarity=0.017 Sum_probs=44.4
Q ss_pred CcchhhHHHHHHHHH--HcCCeEEEeecCC-ChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCce
Q 025574 81 TNASYIAASYVKFVE--SAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFP 157 (250)
Q Consensus 81 ~~~~~i~~s~v~~le--~~G~~~v~i~~~~-~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~P 157 (250)
+...-+++.+.+.++ ..|+.+.+..... +.+++...+.++|+|+|- .+.....+......+++.....+-+|...=
T Consensus 259 GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~~i~~~~~~~d~ii~G-spT~~~~~~~~~~~~l~~l~~~~~~~K~~a 337 (394)
T PRK11921 259 NSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKNDIITEVFKSKAILVG-SSTINRGILSSTAAILEEIKGLGFKNKKAA 337 (394)
T ss_pred hHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHHHHHHHHHhCCEEEEE-CCCcCccccHHHHHHHHHhhccCcCCCEEE
Confidence 345667787888887 6788887766543 345544445578998874 333211112223445555444333443444
Q ss_pred EEcc
Q 025574 158 LYAH 161 (250)
Q Consensus 158 ILGI 161 (250)
++|.
T Consensus 338 ~FGs 341 (394)
T PRK11921 338 AFGS 341 (394)
T ss_pred EEec
Confidence 5665
No 342
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=32.22 E-value=2.2e+02 Score=24.87 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCeE-EEeecCCChhhHHHhcccCCEEEECC
Q 025574 89 SYVKFVESAGARV-IPLIYNEPEDVLFEKLELVNGVLYTG 127 (250)
Q Consensus 89 s~v~~le~~G~~~-v~i~~~~~~~~l~~~l~~~dgvIlpG 127 (250)
...+++++.|.++ +.+...++.+.+..+++.+|.|++..
T Consensus 101 ~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMt 140 (223)
T PRK08745 101 RTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMS 140 (223)
T ss_pred HHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEE
Confidence 4668899999877 44555567888888899999998843
No 343
>TIGR02025 BchH magnesium chelatase, H subunit. This model represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring.
Probab=32.17 E-value=1.9e+02 Score=31.90 Aligned_cols=101 Identities=14% Similarity=0.139 Sum_probs=55.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC--ChhhHHHhc----c---cCCEEEECCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--PEDVLFEKL----E---LVNGVLYTGGW 129 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~--~~~~l~~~l----~---~~dgvIlpGG~ 129 (250)
.+|+|||+.....-- .....++. .+++.||+.|..|+++-... ....+.+.+ . .+|+||-.-|.
T Consensus 238 ~~p~Vgil~~r~~~~------~~~~~~~d-alI~~lE~~G~~vipvf~~gl~~~~~v~~~~~~~~~~~~~vdaiI~~~gF 310 (1216)
T TIGR02025 238 KAPRVGLLLLRKHLL------TGNQAHYD-NLIRELEAAGLQVVPAFSGGLDGRVAVEDFFMKDSTPSVKVDAVVSLTGF 310 (1216)
T ss_pred CCCEEEEEEchhhhh------cCCcHHHH-HHHHHHHHCCCcEEEEEecCccccHHHHHHHHhcccCCCCccEEEECCch
Confidence 589999998664421 12344544 48899999999998875432 111122111 1 47888843232
Q ss_pred CC--CccchHHHHHHHHHHHHhCCCCCCceEEc-ccchhHHHHHHh
Q 025574 130 AK--DGLYYAIVEKVFKKILEKNDAGDHFPLYA-HCLGFELLTMII 172 (250)
Q Consensus 130 ~~--~~~~~~~~~~li~~~~~~~~~g~~~PILG-IClG~QlL~~~~ 172 (250)
.. .|... ..+.-.+...+.| +|++- +-+.+|-+....
T Consensus 311 ~l~ggpa~~-~~~~a~~~L~~ln-----VPvl~~~~l~~qt~~~W~ 350 (1216)
T TIGR02025 311 SLVGGPAGS-DAAAAVEILKGLD-----VPYIVAIPLLFQTIESWT 350 (1216)
T ss_pred hccCCCccc-cchhhHHHHHHCC-----CCEEEEEecCCCCHHHHH
Confidence 11 11111 0111223333557 99986 556678877765
No 344
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=31.90 E-value=2.3e+02 Score=24.97 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=28.8
Q ss_pred HHHHHHHHcCC--eE-EEeecCCChhhHHHhcccCCEEEEC
Q 025574 89 SYVKFVESAGA--RV-IPLIYNEPEDVLFEKLELVNGVLYT 126 (250)
Q Consensus 89 s~v~~le~~G~--~~-v~i~~~~~~~~l~~~l~~~dgvIlp 126 (250)
...+++++.|. ++ +.+...++.+.+.+.++.+|.|++.
T Consensus 107 ~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiM 147 (228)
T PRK08091 107 LTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQIL 147 (228)
T ss_pred HHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEE
Confidence 46678888887 65 4555556788888889999998884
No 345
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=31.52 E-value=1.6e+02 Score=24.76 Aligned_cols=46 Identities=20% Similarity=0.137 Sum_probs=29.4
Q ss_pred chhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCC
Q 025574 83 ASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGG 128 (250)
Q Consensus 83 ~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG 128 (250)
..-+...+.+.+++.|.++++.....+.+. +.... .++||||+.+.
T Consensus 14 ~~~i~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (260)
T cd06286 14 FSQLVDGIEKAALKHGYKVVLLQTNYDKEKELEYLELLKTKQVDGLILCSR 64 (260)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 344556677888889998887765444332 12222 35899999765
No 346
>PRK09492 treR trehalose repressor; Provisional
Probab=31.49 E-value=2.3e+02 Score=24.78 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=35.7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhH----HHh-cccCCEEEECCC
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGG 128 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dgvIlpGG 128 (250)
...||++..... .....-+...+.+.+++.|..+.......+.+.. ... -.++||+|+.+.
T Consensus 62 ~~~Ig~i~~~~~--------~~~~~~~~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 127 (315)
T PRK09492 62 DKVVGIIVSRLD--------SLSENQAVRTMLPAFYEQGYDPIIMESQFSPEKVNEHLGVLKRRNVDGVILFGF 127 (315)
T ss_pred CCeEEEEecCCc--------CcccHHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHhcCCCEEEEeCC
Confidence 358999864321 1122334566778889999988766543333221 111 135899999764
No 347
>PTZ00445 p36-lilke protein; Provisional
Probab=31.49 E-value=1.6e+02 Score=25.82 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCc-c-------chHHHHHHHHHHHHhCCCCCCce
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG-L-------YYAIVEKVFKKILEKNDAGDHFP 157 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~-~-------~~~~~~~li~~~~~~~~~g~~~P 157 (250)
.+..+++.|++.|.+++.+.++.+ + +. +-+||+.... . .......+++.+.+.+ +|
T Consensus 30 ~~~~~v~~L~~~GIk~Va~D~DnT---l---I~-----~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~-----I~ 93 (219)
T PTZ00445 30 SADKFVDLLNECGIKVIASDFDLT---M---IT-----KHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSN-----IK 93 (219)
T ss_pred HHHHHHHHHHHcCCeEEEecchhh---h---hh-----hhcccccCCCcchhhhhccCCHHHHHHHHHHHHCC-----Ce
Confidence 456799999999999998865432 1 11 2367765211 0 1223457788887778 88
Q ss_pred EEcccchhHHH
Q 025574 158 LYAHCLGFELL 168 (250)
Q Consensus 158 ILGIClG~QlL 168 (250)
|.=+=.-=|..
T Consensus 94 v~VVTfSd~~~ 104 (219)
T PTZ00445 94 ISVVTFSDKEL 104 (219)
T ss_pred EEEEEccchhh
Confidence 88777666654
No 348
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=31.46 E-value=45 Score=31.17 Aligned_cols=56 Identities=13% Similarity=0.212 Sum_probs=33.9
Q ss_pred HHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 90 YVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
.++.|+.+|.+..++. .+.+...++.+|.||=-||-+ .+.-.. .++++.+ +||+||
T Consensus 80 ~~~~l~k~giesklv~----R~~lsq~i~waD~VisvGGDG---TfL~Aa----srv~~~~-----~PViGv 135 (395)
T KOG4180|consen 80 CQEELSKAGIESKLVS----RNDLSQPIRWADMVISVGGDG---TFLLAA----SRVIDDS-----KPVIGV 135 (395)
T ss_pred HHHHHhhCCcceeeee----hhhccCcCchhhEEEEecCcc---ceeehh----hhhhccC-----Cceeee
Confidence 3445667888766553 333444477789888888755 222111 1234556 999998
No 349
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=31.21 E-value=1.2e+02 Score=28.13 Aligned_cols=44 Identities=27% Similarity=0.421 Sum_probs=31.2
Q ss_pred CCCCCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC
Q 025574 55 SKLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE 108 (250)
Q Consensus 55 ~~~~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~ 108 (250)
|.....++|||+..|+.+ ..+.| ..+.+.+.+.|.+|-++-.+.
T Consensus 46 p~tG~a~viGITG~PGaG---------KSTli-~~L~~~l~~~G~rVaVlAVDP 89 (323)
T COG1703 46 PRTGNAHVIGITGVPGAG---------KSTLI-EALGRELRERGHRVAVLAVDP 89 (323)
T ss_pred hcCCCCcEEEecCCCCCc---------hHHHH-HHHHHHHHHCCcEEEEEEECC
Confidence 444566799999999752 23444 457788888999887776653
No 350
>PRK07667 uridine kinase; Provisional
Probab=31.06 E-value=1.1e+02 Score=25.42 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=30.6
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN 107 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~ 107 (250)
..+.+|||.+.++. +++.+++.+.+.+...|..+..+..+
T Consensus 15 ~~~~iIgI~G~~gs----------GKStla~~L~~~l~~~~~~~~~i~~D 54 (193)
T PRK07667 15 ENRFILGIDGLSRS----------GKTTFVANLKENMKQEGIPFHIFHID 54 (193)
T ss_pred CCCEEEEEECCCCC----------CHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 35589999987764 56778888888898888877777654
No 351
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=30.88 E-value=2e+02 Score=24.27 Aligned_cols=44 Identities=11% Similarity=0.036 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChhhH----HHhc-ccCCEEEECCCC
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dgvIlpGG~ 129 (250)
+...+.+++++.|..+.....+.+.+.. .... .++||||+.+..
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 65 (269)
T cd06275 17 VVRGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCSE 65 (269)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCC
Confidence 4455677788889988776544333322 2222 468999998753
No 352
>COG5039 Exopolysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=30.72 E-value=3.4e+02 Score=25.28 Aligned_cols=68 Identities=15% Similarity=0.096 Sum_probs=39.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC---ChhhHHHhcccC--CEEEECCCCCCCc
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE---PEDVLFEKLELV--NGVLYTGGWAKDG 133 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~---~~~~l~~~l~~~--dgvIlpGG~~~~~ 133 (250)
.+--|-.+..|... .-+++.|+-.=..+|++.-...+....+. +.+++.....+. |-|+++||+.+..
T Consensus 28 ~k~kiil~~yP~y~-------NiGD~aI~~ae~~fl~~~~~~~v~~~~~~~dfs~se~~~~~s~~~e~~i~~~GGGNlGD 100 (339)
T COG5039 28 AKKKIILLDYPSYP-------NIGDHAIAYAEKAFLKQHYGDKVYYEASVKDFSASELIEIKSDIPEDIIFFTGGGNLGD 100 (339)
T ss_pred ccceEEEecCCCCC-------CchhHHHHHHHHHHHHhhcCceEEEEecccccchhhhhhhhcCCccceEEEeCCCchhh
Confidence 33456666667542 24677887666778888733333333221 233333444455 6999999997643
No 353
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=30.45 E-value=2.3e+02 Score=21.44 Aligned_cols=64 Identities=14% Similarity=0.019 Sum_probs=34.9
Q ss_pred HHHHHHcCCeEEEeecC-C--ChhhHHHhcc--cCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEE
Q 025574 91 VKFVESAGARVIPLIYN-E--PEDVLFEKLE--LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 91 v~~le~~G~~~v~i~~~-~--~~~~l~~~l~--~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PIL 159 (250)
.++|++.|..+..+... . .++......+ ++|.||...-+............+.+.|.+.+ +|++
T Consensus 35 a~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~-----Ip~~ 103 (112)
T cd00532 35 SRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYK-----IPVT 103 (112)
T ss_pred HHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcC-----CCEE
Confidence 46788888877655321 1 2322232223 57888886533211111112336678888888 9986
No 354
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=30.19 E-value=2e+02 Score=25.22 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=29.8
Q ss_pred HHHHHHHHcCCeE-EEeecCCChhhHHHhcccCCEEEECC
Q 025574 89 SYVKFVESAGARV-IPLIYNEPEDVLFEKLELVNGVLYTG 127 (250)
Q Consensus 89 s~v~~le~~G~~~-v~i~~~~~~~~l~~~l~~~dgvIlpG 127 (250)
..++.+++.|+++ +.+...++.+.+...++.+|.|++..
T Consensus 100 r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMs 139 (220)
T COG0036 100 RTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMS 139 (220)
T ss_pred HHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEe
Confidence 3677888889877 44555567888888899999998843
No 355
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=30.16 E-value=1.2e+02 Score=23.29 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=12.9
Q ss_pred HHHHHHHHcCCeEEEeecC
Q 025574 89 SYVKFVESAGARVIPLIYN 107 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~ 107 (250)
...++|.+.|.++.++...
T Consensus 18 ~v~~~l~~~G~~v~~Vnp~ 36 (116)
T PF13380_consen 18 RVLRNLKAAGYEVYPVNPK 36 (116)
T ss_dssp HHHHHHHHTT-EEEEESTT
T ss_pred HHHHHHHhCCCEEEEECCC
Confidence 3567777789888887544
No 356
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=29.85 E-value=3.3e+02 Score=23.63 Aligned_cols=67 Identities=7% Similarity=0.086 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHcCC-eEEEe-ecCCChhh----HHHhc-ccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCc
Q 025574 84 SYIAASYVKFVESAGA-RVIPL-IYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHF 156 (250)
Q Consensus 84 ~~i~~s~v~~le~~G~-~~v~i-~~~~~~~~----l~~~l-~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~ 156 (250)
..+...+.+.+++.|. .++.. +.+.+.+. +...+ +++||||+.+. + + ......++.+.+++ +
T Consensus 14 ~~~~~gi~~~a~~~g~~~~i~~~~~~~d~~~q~~~i~~l~~~~vdgiIi~~~-~--~---~~~~~~l~~~~~~g-----i 82 (302)
T TIGR02637 14 EAANKGAEEAAKELGSVYIIYTGPTGTTAEGQIEVVNSLIAQKVDAIAISAN-D--P---DALVPALKKAMKRG-----I 82 (302)
T ss_pred HHHHHHHHHHHHHhCCeeEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-C--h---HHHHHHHHHHHHCC-----C
Confidence 3355567778888884 33332 12222221 12222 47999999753 2 1 11223456665656 7
Q ss_pred eEEcc
Q 025574 157 PLYAH 161 (250)
Q Consensus 157 PILGI 161 (250)
|+.-+
T Consensus 83 PvV~~ 87 (302)
T TIGR02637 83 KVVTW 87 (302)
T ss_pred EEEEe
Confidence 76543
No 357
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=29.75 E-value=3e+02 Score=22.34 Aligned_cols=92 Identities=13% Similarity=0.180 Sum_probs=45.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHH-HcCCeEEEeecCC--------------C--hhhHHHhcccCCEEE
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVE-SAGARVIPLIYNE--------------P--EDVLFEKLELVNGVL 124 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le-~~G~~~v~i~~~~--------------~--~~~l~~~l~~~dgvI 124 (250)
+++|.+.++.+ ....-+.+.+.+.++ +.|.++..+.... + .+.+.+.+..+|+||
T Consensus 2 Il~i~GS~r~~--------s~t~~l~~~~~~~l~~~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iI 73 (174)
T TIGR03566 2 VVGVSGSLTRP--------SRTLALVEALVAELAARLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLV 73 (174)
T ss_pred EEEEECCCCCC--------ChHHHHHHHHHHHHHHhcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEE
Confidence 56777766531 234445566666664 5677776654311 0 123345567889887
Q ss_pred ECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccch
Q 025574 125 YTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (250)
Q Consensus 125 lpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG 164 (250)
+. -|.+...+....+.+++++-.. .=.+||+.=++-|
T Consensus 74 i~-tP~Y~~s~~~~LKn~lD~~~~~--~l~~K~~~~v~~~ 110 (174)
T TIGR03566 74 VG-SPVYRGSYTGLFKHLFDLVDPN--ALIGKPVLLAATG 110 (174)
T ss_pred EE-CCcCcCcCcHHHHHHHHhcCHh--HhCCCEEEEEEec
Confidence 74 2222222333344445443110 0112777655553
No 358
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=29.60 E-value=2.5e+02 Score=21.26 Aligned_cols=43 Identities=9% Similarity=0.056 Sum_probs=30.6
Q ss_pred cchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEEC
Q 025574 82 NASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYT 126 (250)
Q Consensus 82 ~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlp 126 (250)
..+.+.....+++++.|..+.+... +..++....+++|-++++
T Consensus 12 SSs~la~km~~~a~~~gi~~~i~a~--~~~e~~~~~~~~Dvill~ 54 (99)
T cd05565 12 TSGLLANALNKGAKERGVPLEAAAG--AYGSHYDMIPDYDLVILA 54 (99)
T ss_pred CHHHHHHHHHHHHHHCCCcEEEEEe--eHHHHHHhccCCCEEEEc
Confidence 4667777888899999987765543 344566668889966654
No 359
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=29.59 E-value=2.6e+02 Score=27.73 Aligned_cols=79 Identities=9% Similarity=0.104 Sum_probs=42.6
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC---ChhhHHHhcccCCEEEECCCCCCCcc
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE---PEDVLFEKLELVNGVLYTGGWAKDGL 134 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~---~~~~l~~~l~~~dgvIlpGG~~~~~~ 134 (250)
..+|+||+++.-+... ... ...+++.|+ .+.++..+.... ..+.+.+.++++|.+|+.|-.. .
T Consensus 181 ~~~~~V~~l~ghGE~~--------~~~--~~~l~~~L~-~~y~v~~l~l~~~~~~~~~ip~~l~d~d~LvI~~P~~---~ 246 (552)
T TIGR03521 181 PREKRIAVLKGNGELA--------DLQ--IADLVSTLK-EYYFIAPFTLDSVAANPAKTLADLKKFDLIVIAKPTE---A 246 (552)
T ss_pred ccCceEEEEeCCCCCC--------hHH--HHHHHHHHH-hcCceeeecchhcccCcccccccccCcCEEEEeCCCc---c
Confidence 3679999998653211 011 134566777 677777665431 1123333345899999987642 1
Q ss_pred chHHHHHHHHHHHHhC
Q 025574 135 YYAIVEKVFKKILEKN 150 (250)
Q Consensus 135 ~~~~~~~li~~~~~~~ 150 (250)
+.......++..++++
T Consensus 247 ls~~e~~~Ldqfl~~G 262 (552)
T TIGR03521 247 FSEREKYILDQYIMNG 262 (552)
T ss_pred CCHHHHHHHHHHHHcC
Confidence 2222334455555555
No 360
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=29.40 E-value=1.1e+02 Score=29.30 Aligned_cols=87 Identities=18% Similarity=0.268 Sum_probs=47.1
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcC--CeEEEeecCC----ChhhHHHh---c---ccCCEEEEC-C
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAG--ARVIPLIYNE----PEDVLFEK---L---ELVNGVLYT-G 127 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G--~~~v~i~~~~----~~~~l~~~---l---~~~dgvIlp-G 127 (250)
-.|||+|.+.... ...+.+-+++.. +++...|..- ....+-.- + ..+|-||+. |
T Consensus 130 ~~i~vits~~~aa-------------~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RG 196 (432)
T TIGR00237 130 KRVGVITSQTGAA-------------LADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRG 196 (432)
T ss_pred CEEEEEeCCccHH-------------HHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecC
Confidence 4799999885311 233455555443 4555444321 12222111 1 236776664 5
Q ss_pred CCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhH
Q 025574 128 GWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (250)
Q Consensus 128 G~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~Q 166 (250)
|++...-|.-..+.+.+.+.+.. +||+ ...||+
T Consensus 197 GGs~eDL~~Fn~e~~~rai~~~~-----~Pvi-s~iGHe 229 (432)
T TIGR00237 197 GGSLEDLWSFNDEKVARAIFLSK-----IPII-SAVGHE 229 (432)
T ss_pred CCCHHHhhhcCcHHHHHHHHcCC-----CCEE-EecCcC
Confidence 66544433323457788888888 9998 555665
No 361
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=29.31 E-value=2.9e+02 Score=25.06 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=27.9
Q ss_pred HHHHHHHHHHcCCeEEEeecCCC--hhhHHHh--cccCCEEEECCCCC
Q 025574 87 AASYVKFVESAGARVIPLIYNEP--EDVLFEK--LELVNGVLYTGGWA 130 (250)
Q Consensus 87 ~~s~v~~le~~G~~~v~i~~~~~--~~~l~~~--l~~~dgvIlpGG~~ 130 (250)
.+...+.|++.|.+......... ..++-+. .+.+|.||..||-.
T Consensus 22 ~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDG 69 (301)
T COG1597 22 LREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDG 69 (301)
T ss_pred HHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcc
Confidence 34577889999988776655433 2222111 12589998888865
No 362
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=29.27 E-value=2.4e+02 Score=20.91 Aligned_cols=44 Identities=23% Similarity=0.161 Sum_probs=30.4
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEEC
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYT 126 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlp 126 (250)
-..|.+.....+.+++.|..+.+... +..++....+++|-|+++
T Consensus 10 ~sTS~~~~ki~~~~~~~~~~~~v~~~--~~~~~~~~~~~~Diil~~ 53 (96)
T cd05564 10 MSTSILVKKMKKAAEKRGIDAEIEAV--PESELEEYIDDADVVLLG 53 (96)
T ss_pred chHHHHHHHHHHHHHHCCCceEEEEe--cHHHHHHhcCCCCEEEEC
Confidence 34667777888899999987655443 334455556788977776
No 363
>PRK09701 D-allose transporter subunit; Provisional
Probab=29.13 E-value=4e+02 Score=23.53 Aligned_cols=62 Identities=6% Similarity=-0.061 Sum_probs=34.9
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEee--cCCChh----hHHHhc-ccCCEEEECCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI--YNEPED----VLFEKL-ELVNGVLYTGG 128 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~--~~~~~~----~l~~~l-~~~dgvIlpGG 128 (250)
+.-.||++..... +.....+.....+.+++.|..+..+. ...+.+ .++..+ +++||||+.+.
T Consensus 23 ~~~~Igvi~~~~~--------~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 91 (311)
T PRK09701 23 AAAEYAVVLKTLS--------NPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 91 (311)
T ss_pred cCCeEEEEeCCCC--------CHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3447888764321 12233345566778888898887653 222221 122222 36999999865
No 364
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=28.51 E-value=2.5e+02 Score=26.97 Aligned_cols=61 Identities=21% Similarity=0.202 Sum_probs=42.3
Q ss_pred HHHHHHHcCCeEEEeecCC---ChhhHHHhccc--CCEEEECCCCCCC--ccchH-HHHHHHHHHHHhC
Q 025574 90 YVKFVESAGARVIPLIYNE---PEDVLFEKLEL--VNGVLYTGGWAKD--GLYYA-IVEKVFKKILEKN 150 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~---~~~~l~~~l~~--~dgvIlpGG~~~~--~~~~~-~~~~li~~~~~~~ 150 (250)
..+.++..|++++.|+.+. +++.+.+.+++ +..++++...... ..|.. ..+++++.|-+.+
T Consensus 192 ~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~ 260 (459)
T COG1167 192 ALQALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYD 260 (459)
T ss_pred HHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcC
Confidence 4678999999999999875 45666665553 7899998776642 13333 3458888886555
No 365
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=28.49 E-value=1.6e+02 Score=29.53 Aligned_cols=68 Identities=13% Similarity=0.300 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHH
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~Ql 167 (250)
+|+|+++-+.|.+|..|.+..+...- . . ... .+|.+.....++.+.+.. ..+.+=++|.|+|--+
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~~-r---~---------~~l-dDYv~~i~~Ald~V~~~t-G~~~vnl~GyC~GGtl 301 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKAH-R---E---------WGL-STYVDALKEAVDAVRAIT-GSRDLNLLGACAGGLT 301 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChhh-c---C---------CCH-HHHHHHHHHHHHHHHHhc-CCCCeeEEEECcchHH
Confidence 68999999999999999875432210 0 0 011 234332334455553321 2233789999999998
Q ss_pred HHH
Q 025574 168 LTM 170 (250)
Q Consensus 168 L~~ 170 (250)
++.
T Consensus 302 ~a~ 304 (560)
T TIGR01839 302 CAA 304 (560)
T ss_pred HHH
Confidence 886
No 366
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=28.48 E-value=2e+02 Score=28.85 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=28.5
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeec
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY 106 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~ 106 (250)
..||+|||.+...+..++ +.+..-+.....+.++++|+.++..+.
T Consensus 40 ~~kP~IgI~~s~~d~~p~----h~hl~~l~~~vk~~i~~aGg~p~ef~t 84 (575)
T COG0129 40 FGKPIIGIANSYNDMVPG----HQHLKDLAQLVKEGIREAGGVPVEFGT 84 (575)
T ss_pred cCCCeEEEEeccccCcCc----hhhHHHHHHHHHHHHHHcCCceeEeCC
Confidence 489999999887654332 122222344566788888876665543
No 367
>KOG2371 consensus Molybdopterin biosynthesis protein [Coenzyme transport and metabolism]
Probab=28.47 E-value=1.4e+02 Score=28.46 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=43.4
Q ss_pred CCCCcEEEEeCCCCCCCCC-CCCCCCcchhhHHHHHHHHHHcCCeEEEee-cCCChhh----HHHhcccCCEEEECCCCC
Q 025574 57 LNYRPVIGIVTHPGDGASG-RLNNATNASYIAASYVKFVESAGARVIPLI-YNEPEDV----LFEKLELVNGVLYTGGWA 130 (250)
Q Consensus 57 ~~~~PvIGI~~~~~~~~~~-~~~~~~~~~~i~~s~v~~le~~G~~~v~i~-~~~~~~~----l~~~l~~~dgvIlpGG~~ 130 (250)
.+.+|+|.|++.-...... +..++...+.-....+..+.+.|+.++-.- ..++.+. |.+.++.+|-||-+||-.
T Consensus 186 iykkpvVtV~sTgSel~~~d~~~pg~v~~~n~s~l~~l~~~~Gf~~i~~gvv~D~~~~i~e~L~e~~~~aDvIlTtGGvs 265 (411)
T KOG2371|consen 186 IYKKPVVTVSSTGSELNSPDRSGPGMVRDSNRSQLLELFQEHGFTAIDAGVVPDDVTRIKEKLREASSFADVILTTGGVS 265 (411)
T ss_pred eecccEEEEeeccccccCccccCCceeeecchHHHHHHHHHhCccccccccccCcHHHHHHHHHHhhhhccEEEecCCcc
Confidence 4568999998665443321 112223344444456667888888743111 1123333 344456678888899987
Q ss_pred CCc
Q 025574 131 KDG 133 (250)
Q Consensus 131 ~~~ 133 (250)
+.+
T Consensus 266 m~~ 268 (411)
T KOG2371|consen 266 MGP 268 (411)
T ss_pred ccc
Confidence 644
No 368
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=28.41 E-value=1.1e+02 Score=24.87 Aligned_cols=27 Identities=26% Similarity=0.307 Sum_probs=18.8
Q ss_pred CCEEEECCCCCCCccchHHHHHHHHHHHHhC
Q 025574 120 VNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (250)
Q Consensus 120 ~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~ 150 (250)
+.||.|+||. . ..+...++++.+.+.+
T Consensus 62 ~~gVt~SGGE-l---~~~~l~~ll~~lk~~G 88 (147)
T TIGR02826 62 ISCVLFLGGE-W---NREALLSLLKIFKEKG 88 (147)
T ss_pred CCEEEEechh-c---CHHHHHHHHHHHHHCC
Confidence 4799999998 3 2233457778776665
No 369
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=28.27 E-value=2.3e+02 Score=22.97 Aligned_cols=89 Identities=11% Similarity=0.076 Sum_probs=47.9
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCC---eEEEeecCCChh---hHHHhc--ccCCEEEECCC--
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA---RVIPLIYNEPED---VLFEKL--ELVNGVLYTGG-- 128 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~---~~v~i~~~~~~~---~l~~~l--~~~dgvIlpGG-- 128 (250)
.++.|||+...- +....+-+.....+.|++.|+ .+..+...-..| .+..++ .++||+|.-|-
T Consensus 2 ~~~ri~IV~s~~--------n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG~VI 73 (144)
T PF00885_consen 2 SGLRIAIVVSRF--------NEEITDRLLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALGCVI 73 (144)
T ss_dssp TTEEEEEEEEST--------THHHHHHHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEEEEE
T ss_pred CCCEEEEEEEec--------cHHHHHHHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEecccc
Confidence 456788876442 122233344456778888887 455544433222 112222 35999988882
Q ss_pred CCCCccchH-----HHHHHHHHHHHhCCCCCCceE-Ecc
Q 025574 129 WAKDGLYYA-----IVEKVFKKILEKNDAGDHFPL-YAH 161 (250)
Q Consensus 129 ~~~~~~~~~-----~~~~li~~~~~~~~~g~~~PI-LGI 161 (250)
.+- ...++ ....+.+..++.+ +|| +||
T Consensus 74 ~G~-T~H~~~v~~~v~~gl~~lsl~~~-----~PV~~gv 106 (144)
T PF00885_consen 74 RGE-TDHFEYVANAVSRGLMDLSLEYG-----IPVIFGV 106 (144)
T ss_dssp --S-STHHHHHHHHHHHHHHHHHHHHT-----SEEEEEE
T ss_pred CCC-chHHHHHHHHHHHHHHHHhccCC-----ccEEEEe
Confidence 111 11222 2247788888888 997 344
No 370
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=28.21 E-value=2.5e+02 Score=24.45 Aligned_cols=117 Identities=14% Similarity=0.125 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHHHcCCeEEEeecCCChhhH-HHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEccc
Q 025574 84 SYIAASYVKFVESAGARVIPLIYNEPEDVL-FEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 84 ~~i~~s~v~~le~~G~~~v~i~~~~~~~~l-~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIC 162 (250)
..|-..+...|++.|..|..-.++.+...+ ++.|+++|.||+-+-... ..+....++-++..++.+ .=+.|+=
T Consensus 22 ~~~~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~~-~~l~~eq~~~l~~~V~~G-----gGlv~lH 95 (215)
T cd03142 22 DGMHGTIAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIAH-DEVKDEIVERVHRRVLDG-----MGLIVLH 95 (215)
T ss_pred chHHHHHHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCCc-CcCCHHHHHHHHHHHHcC-----CCEEEEC
Confidence 345566777999999888755444322111 224788999998322211 112222233344444555 5566665
Q ss_pred chhH--HHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhh
Q 025574 163 LGFE--LLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKL 211 (250)
Q Consensus 163 lG~Q--lL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~ 211 (250)
-|+- ......||.-. ... ..++....+... + .++++-+++|+.+
T Consensus 96 sg~~s~~y~~lvGg~f~-~~~-h~~~~~~~v~v~-~--p~HPIt~Gl~~~f 141 (215)
T cd03142 96 SGHYSKIFKKLMGTTCT-LKW-REAGERERVWVV-E--PGHPITDGIPEYI 141 (215)
T ss_pred CCcCCHHHHHhhCCccc-cee-cCCCceeEEEEe-c--CCCchhcCCCCcc
Confidence 5552 11113466411 100 011222223222 1 2577778887753
No 371
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.97 E-value=2.3e+02 Score=27.53 Aligned_cols=65 Identities=11% Similarity=0.199 Sum_probs=42.5
Q ss_pred CCCCCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC-h-hhHHHhcccCCEEEECCCCC
Q 025574 55 SKLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-E-DVLFEKLELVNGVLYTGGWA 130 (250)
Q Consensus 55 ~~~~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~-~-~~l~~~l~~~dgvIlpGG~~ 130 (250)
.+.+.+|.|.|+.-|+.+. .+-.+ ..|.|...|..+++.....+ . +....+..++++..+|=+..
T Consensus 261 rn~~~~P~V~Ilcgpgnng--------gdg~v---~gRHL~~~G~~~vi~~pk~s~~~~~~~~L~~q~~~~~Ip~v~~ 327 (453)
T KOG2585|consen 261 RNSHQWPLVAILCGPGNNG--------GDGLV---CGRHLAQHGYTPVIYYPKRSLNVDLYKSLVKQCDGFSIPSVSE 327 (453)
T ss_pred cccCCCceEEEEeCCCCcc--------chhHH---HHHHHHHcCceeEEEeecCccchhHHHHHHHHhcCcccccccc
Confidence 3457889999999997632 12222 34788899988776644322 1 33344567788888887765
No 372
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=27.90 E-value=2.3e+02 Score=27.54 Aligned_cols=46 Identities=17% Similarity=0.094 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCeEEEeecCCChh---hH---------------HHhcccCCEEEECCCCCCCc
Q 025574 88 ASYVKFVESAGARVIPLIYNEPED---VL---------------FEKLELVNGVLYTGGWAKDG 133 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~---~l---------------~~~l~~~dgvIlpGG~~~~~ 133 (250)
.+.+++|.+.|+++.+..-...++ .. ...+..+|-||++.|-..+.
T Consensus 20 ~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~ 83 (448)
T COG0771 20 LAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTH 83 (448)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCC
Confidence 457889999999888765332221 00 01244578888888865433
No 373
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=27.89 E-value=80 Score=28.93 Aligned_cols=41 Identities=27% Similarity=0.402 Sum_probs=30.0
Q ss_pred EEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHH
Q 025574 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLT 169 (250)
Q Consensus 122 gvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~ 169 (250)
||+.+||+. |.+-.....+++.+.+.+ .=|+|+..|++=|.
T Consensus 3 aIltsGG~a--pG~Na~i~~vv~~a~~~g-----~~v~G~~~G~~GL~ 43 (301)
T TIGR02482 3 GILTSGGDA--PGMNAAIRAVVRTAIYHG-----FEVYGIRRGYKGLI 43 (301)
T ss_pred EEEccCCCc--HHHHHHHHHHHHHHHHCC-----CEEEEEecCHHHhc
Confidence 577777776 555545567778777666 78999999998664
No 374
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.81 E-value=2.3e+02 Score=23.84 Aligned_cols=44 Identities=14% Similarity=0.017 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHcCCeEEEeecCCChhhH----HHhc-ccCCEEEECCC
Q 025574 85 YIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGG 128 (250)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dgvIlpGG 128 (250)
-+...+.+.+++.|..++....+.+.+.. .... .++||+|+.+.
T Consensus 16 ~~~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (265)
T cd06290 16 RILKGMERGLNGSGYSPIIATGHWNQSRELEALELLKSRRVDALILLGG 64 (265)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 34455667888899988776554443221 2222 35999999765
No 375
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=27.13 E-value=4.6e+02 Score=23.48 Aligned_cols=62 Identities=13% Similarity=-0.036 Sum_probs=32.5
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcC-CeEEEeecCCChh----hHHHhc-ccCCEEEECCCC
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAG-ARVIPLIYNEPED----VLFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G-~~~v~i~~~~~~~----~l~~~l-~~~dgvIlpGG~ 129 (250)
..+||++..... .....-+...+.+.+++.| ..++......+.+ .+.... .++||+|+.+..
T Consensus 24 ~~~Igvv~~~~~--------~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 91 (330)
T PRK15395 24 DTRIGVTIYKYD--------DNFMSVVRKAIEKDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVD 91 (330)
T ss_pred CceEEEEEecCc--------chHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 467998764211 1122234455677788876 4554433322222 222222 379999997653
No 376
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=26.89 E-value=4.6e+02 Score=23.85 Aligned_cols=81 Identities=6% Similarity=-0.048 Sum_probs=44.0
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEe-ecCCChh----hHHHhc-ccCCEEEECCCCCCCccc
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPL-IYNEPED----VLFEKL-ELVNGVLYTGGWAKDGLY 135 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i-~~~~~~~----~l~~~l-~~~dgvIlpGG~~~~~~~ 135 (250)
.|+++...... ....-+.....++.++.|..+... +...+.+ .+...+ +++|||++.+...
T Consensus 25 ~i~~v~k~~~~--------pf~~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~----- 91 (336)
T PRK15408 25 RIAFIPKLVGV--------GFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSP----- 91 (336)
T ss_pred EEEEEECCCCC--------HHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCCH-----
Confidence 58887644321 122234556778888999888752 2222221 122222 4699999974321
Q ss_pred hHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 136 YAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 136 ~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
......++.+.+++ +||.-+
T Consensus 92 -~al~~~l~~a~~~g-----IpVV~~ 111 (336)
T PRK15408 92 -DGLCPALKRAMQRG-----VKVLTW 111 (336)
T ss_pred -HHHHHHHHHHHHCC-----CeEEEe
Confidence 12235566676666 666544
No 377
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=26.73 E-value=2.2e+02 Score=25.77 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=36.1
Q ss_pred HHHHcCCeEEEeecCCChhhHHHhcccC-CEEEECCCCCCCccchHHHHHHHHHHHHhC
Q 025574 93 FVESAGARVIPLIYNEPEDVLFEKLELV-NGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (250)
Q Consensus 93 ~le~~G~~~v~i~~~~~~~~l~~~l~~~-dgvIlpGG~~~~~~~~~~~~~li~~~~~~~ 150 (250)
.-.+.|++++-..|+.+.+...+..+.+ -.||+.||+..++. +...+....+++++
T Consensus 174 laaelGADIiK~~ytg~~e~F~~vv~~~~vpVviaGG~k~~~~--~~~l~~~~~ai~aG 230 (265)
T COG1830 174 LAAELGADIIKTKYTGDPESFRRVVAACGVPVVIAGGPKTETE--REFLEMVTAAIEAG 230 (265)
T ss_pred HHHHhcCCeEeecCCCChHHHHHHHHhCCCCEEEeCCCCCCCh--HHHHHHHHHHHHcc
Confidence 3456899999999988777666555443 48999999875232 22334455555544
No 378
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=26.51 E-value=1.1e+02 Score=27.30 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCCeEEEeecCC----ChhhH---HHhcccCCEEEECCCCC
Q 025574 88 ASYVKFVESAGARVIPLIYNE----PEDVL---FEKLELVNGVLYTGGWA 130 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~----~~~~l---~~~l~~~dgvIlpGG~~ 130 (250)
..+.+.|++.|++++.+|.-. +...+ ...++++|.|||+-..+
T Consensus 31 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NA 80 (266)
T PRK08811 31 APLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAA 80 (266)
T ss_pred HHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHH
Confidence 457789999999999877521 11111 13356899999986544
No 379
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=26.28 E-value=3e+02 Score=21.09 Aligned_cols=55 Identities=16% Similarity=0.089 Sum_probs=37.5
Q ss_pred HHHHHcCCeEEEeecCCChhhHHHhc--ccCCEEEECCCCCCCccchHHHHHHHHHHHHh
Q 025574 92 KFVESAGARVIPLIYNEPEDVLFEKL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEK 149 (250)
Q Consensus 92 ~~le~~G~~~v~i~~~~~~~~l~~~l--~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~ 149 (250)
.+++..|.+++-+..+.+.+++.+.. .++|.|.+++-.. .+....+++++...+.
T Consensus 21 ~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~---~~~~~~~~~~~~L~~~ 77 (122)
T cd02071 21 RALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSG---GHMTLFPEVIELLREL 77 (122)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccch---hhHHHHHHHHHHHHhc
Confidence 47899999999887766766664433 3588899987643 3444456777776555
No 380
>PRK02399 hypothetical protein; Provisional
Probab=26.22 E-value=2.1e+02 Score=27.46 Aligned_cols=100 Identities=16% Similarity=0.237 Sum_probs=58.3
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhH-HHhc--ccCCEEE---------
Q 025574 57 LNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL-FEKL--ELVNGVL--------- 124 (250)
Q Consensus 57 ~~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l-~~~l--~~~dgvI--------- 124 (250)
...||+|||++.--. ..++.+ ..+.||+.|+++.+.+-+-..-.. +++. ..++||+
T Consensus 183 ~~~kp~Ig~TmfGvT-----------tp~v~~-~~~~Le~~GyEvlVFHATG~GGraME~Li~~G~~~gVlDlTttEv~d 250 (406)
T PRK02399 183 SDDKPLIGLTMFGVT-----------TPCVQA-AREELEARGYEVLVFHATGTGGRAMEKLIDSGLIAGVLDLTTTEVCD 250 (406)
T ss_pred CCCCceEEEecCCCc-----------HHHHHH-HHHHHHhCCCeEEEEcCCCCchHHHHHHHHcCCceEEEEcchHHHHH
Confidence 468999999985532 234433 667899999999888765322111 1112 2355554
Q ss_pred -ECCCCC-CCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcccccccc
Q 025574 125 -YTGGWA-KDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESF 182 (250)
Q Consensus 125 -lpGG~~-~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~~l~~~ 182 (250)
+-||-- .. .+-++.+.+++ +|-...|=++-+++ ||....+.++|
T Consensus 251 ~l~GGv~sag-------p~Rl~Aa~~~g-----IP~Vvs~GalDmVn--Fg~~~tvPe~f 296 (406)
T PRK02399 251 ELFGGVLAAG-------PDRLEAAARTG-----IPQVVSPGALDMVN--FGAPDTVPEKF 296 (406)
T ss_pred HHhCcCccCC-------ccHHHHHHHcC-----CCEEecCCceeeee--cCCcccccHhh
Confidence 123311 11 12356677788 99998887776665 35543334444
No 381
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=25.76 E-value=2.5e+02 Score=24.77 Aligned_cols=50 Identities=14% Similarity=0.162 Sum_probs=27.8
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCC---------------ChhhHHHhcccCCEEEECCCCCC
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNE---------------PEDVLFEKLELVNGVLYTGGWAK 131 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~---------------~~~~l~~~l~~~dgvIlpGG~~~ 131 (250)
.++.-+..+.++.+. -+++++++..+. +...+.+.++++|.+|+.||+-+
T Consensus 12 ~GDe~~l~~~l~~l~-~~~~~~v~s~~p~~~~~~~~v~~~~r~~~~~~~~~l~~~D~vI~gGG~l~ 76 (298)
T TIGR03609 12 LGDEALLAALLRELP-PGVEPTVLSNDPAETAKLYGVEAVNRRSLLAVLRALRRADVVIWGGGSLL 76 (298)
T ss_pred cchHHHHHHHHHhcC-CCCeEEEecCChHHHHhhcCceEEccCCHHHHHHHHHHCCEEEECCcccc
Confidence 345555555555553 355665554221 11123344678899998888764
No 382
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=25.70 E-value=2.3e+02 Score=22.42 Aligned_cols=39 Identities=13% Similarity=0.017 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCC
Q 025574 87 AASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD 132 (250)
Q Consensus 87 ~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~ 132 (250)
...+.+++.+.|..+.+++.+. .+.+++-||+|.....+
T Consensus 28 ~~~~~~~l~~~gi~~d~v~~~~-------~l~~y~~vi~P~~~~~~ 66 (154)
T cd03143 28 ALALYRALRELGIPVDVVPPDA-------DLSGYKLVVLPDLYLLS 66 (154)
T ss_pred HHHHHHHHHHCCCCEEEECCCC-------CcccCCEEEECchhcCC
Confidence 4567889999999888886322 26689999999887654
No 383
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=25.54 E-value=4.7e+02 Score=23.04 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=34.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGG 128 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG 128 (250)
...+|||+..+.... + .+....-+...+.+.+++.|..++... +...+ ....++||+|+.+-
T Consensus 62 ~~~~i~v~~~~~~~~---~-~~~f~~~l~~~i~~~~~~~g~~~~~~~-~~~~~---~~~~~vDgiI~~~~ 123 (327)
T PRK10339 62 QHHILAIYSYQQELE---I-NDPYYLAIRHGIETQCEKLGIELTNCY-EHSGL---PDIKNVTGILIVGK 123 (327)
T ss_pred cccEEEEEEcccccc---c-cCchHHHHHHHHHHHHHHCCCEEEEee-ccccc---cccccCCEEEEeCC
Confidence 346889876421100 0 112233355667778888998876542 22221 12568999999873
No 384
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=25.39 E-value=2.2e+02 Score=21.72 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccc
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGICl 163 (250)
++....|++.|.+++......+.-.+-.....+.+|+++=- +........+++...+++ ..+|||=+.-
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d----~~~~~~~~~ll~~i~~~~---~~iPVFl~~~ 75 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD----GEEEDEAQELLDKIRERN---FGIPVFLLAE 75 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH----HHHHHHHHHHHHHHHHHS---TT-EEEEEES
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc----cccchhHHHHHHHHHHhC---CCCCEEEEec
Confidence 35677898889988876422111122222345778988721 111123347777776655 3399986543
No 385
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=25.35 E-value=3.5e+02 Score=22.46 Aligned_cols=63 Identities=14% Similarity=0.012 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhH---HHhc--ccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEccc
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVL---FEKL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l---~~~l--~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIC 162 (250)
..+.+++...|.+++...-+.+.+-. .+.+ .++|+++|--|-+ + +..+++++.+.+ +-|.|+-
T Consensus 69 ~~l~~~l~~~Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~---D----F~~Lv~~lre~G-----~~V~v~g 136 (160)
T TIGR00288 69 DKLIEAVVNQGFEPIIVAGDVDVRMAVEAMELIYNPNIDAVALVTRDA---D----FLPVINKAKENG-----KETIVIG 136 (160)
T ss_pred HHHHHHHHHCCceEEEecCcccHHHHHHHHHHhccCCCCEEEEEeccH---h----HHHHHHHHHHCC-----CEEEEEe
Confidence 45677888999988765443332211 1233 6778876655532 1 235677777777 8887764
No 386
>PRK06703 flavodoxin; Provisional
Probab=25.02 E-value=3.4e+02 Score=21.32 Aligned_cols=42 Identities=17% Similarity=0.163 Sum_probs=29.2
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEE
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLY 125 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIl 125 (250)
+....++..+.+.++..|..+.+........ ..+.++|.|+|
T Consensus 13 GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~---~~l~~~d~vii 54 (151)
T PRK06703 13 GNTEDIADLIKVSLDAFDHEVVLQEMDGMDA---EELLAYDGIIL 54 (151)
T ss_pred chHHHHHHHHHHHHHhcCCceEEEehhhCCH---HHHhcCCcEEE
Confidence 4567888888888998898877665443211 12567898888
No 387
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=24.31 E-value=3.3e+02 Score=24.30 Aligned_cols=62 Identities=8% Similarity=-0.014 Sum_probs=36.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGG 128 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG 128 (250)
...+||++..... .....-+...+.+.+++.|..+.......+.+. +.... .++||+|+.+.
T Consensus 58 ~~~~Igvi~~~~~--------~~f~~~l~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~ 124 (346)
T PRK10401 58 VSDTIGVVVMDVS--------DAFFGALVKAVDLVAQQHQKYVLIGNSYHEAEKERHAIEVLIRQRCNALIVHSK 124 (346)
T ss_pred CCCEEEEEeCCCC--------CccHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4468999864211 122334556677788889988776544333222 22211 46999999864
No 388
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=24.29 E-value=4.2e+02 Score=22.44 Aligned_cols=68 Identities=12% Similarity=0.015 Sum_probs=34.9
Q ss_pred chhhHHHHHHHHHHcCCeEEEeec----CCChh----hHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCC
Q 025574 83 ASYIAASYVKFVESAGARVIPLIY----NEPED----VLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGD 154 (250)
Q Consensus 83 ~~~i~~s~v~~le~~G~~~v~i~~----~~~~~----~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~ 154 (250)
..-+...+.+.+++.|...+.+.. ..+.+ .+....+++||+|+.+... . .....++.+.+.+
T Consensus 14 ~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vdgiii~~~~~--~----~~~~~i~~~~~~~---- 83 (275)
T cd06307 14 YRELAAALEAAAAAFPDARIRVRIHFVESFDPAALAAALLRLGARSDGVALVAPDH--P----QVRAAVARLAAAG---- 83 (275)
T ss_pred HHHHHHHHHHHHhhhhccCceEEEEEccCCCHHHHHHHHHHHHhcCCEEEEeCCCc--H----HHHHHHHHHHHCC----
Confidence 334555666777777764443321 11222 2222223799999975432 1 1123456665666
Q ss_pred CceEEcc
Q 025574 155 HFPLYAH 161 (250)
Q Consensus 155 ~~PILGI 161 (250)
+|+.-+
T Consensus 84 -ipvV~~ 89 (275)
T cd06307 84 -VPVVTL 89 (275)
T ss_pred -CcEEEE
Confidence 777644
No 389
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.29 E-value=3.1e+02 Score=26.37 Aligned_cols=18 Identities=0% Similarity=-0.140 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCCeEEEee
Q 025574 88 ASYVKFVESAGARVIPLI 105 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~ 105 (250)
.+..++|.+.|+.+++..
T Consensus 21 ~~~~~~l~~~g~~v~~~d 38 (468)
T PRK04690 21 RAAYRALRAHLPAQALTL 38 (468)
T ss_pred HHHHHHHHHcCCEEEEEc
Confidence 356788999999887765
No 390
>PRK08005 epimerase; Validated
Probab=24.12 E-value=2.7e+02 Score=24.12 Aligned_cols=39 Identities=10% Similarity=0.044 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCeE-EEeecCCChhhHHHhcccCCEEEECC
Q 025574 89 SYVKFVESAGARV-IPLIYNEPEDVLFEKLELVNGVLYTG 127 (250)
Q Consensus 89 s~v~~le~~G~~~-v~i~~~~~~~~l~~~l~~~dgvIlpG 127 (250)
...+.+++.|.++ +.+...++.+.+...++.+|.|++..
T Consensus 97 ~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMs 136 (210)
T PRK08005 97 EILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMT 136 (210)
T ss_pred HHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEE
Confidence 3667888889877 44555567788888888999988854
No 391
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=23.99 E-value=4.6e+02 Score=25.47 Aligned_cols=80 Identities=10% Similarity=0.133 Sum_probs=44.0
Q ss_pred CcchhhHHHHHHHHHHc--CCeEEEeecCC-ChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCce
Q 025574 81 TNASYIAASYVKFVESA--GARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFP 157 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~--G~~~v~i~~~~-~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~P 157 (250)
++..-++..+.+.+++. |+.+.+..... +.+++...+.++|+|+| |.+............+++...+.+-+|...=
T Consensus 263 GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i~~~~~~ad~vil-GspT~~~~~~p~~~~fl~~l~~~~l~gK~~~ 341 (479)
T PRK05452 263 NNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEILTNVFRSKGVLV-GSSTMNNVMMPKIAGLLEEITGLRFRNKRAS 341 (479)
T ss_pred cHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHHHhHHhhCCEEEE-ECCccCCcchHHHHHHHHHhhccCcCCCEEE
Confidence 34566777788889876 45666655543 34444333446898766 4444322233334455665544444554455
Q ss_pred EEcc
Q 025574 158 LYAH 161 (250)
Q Consensus 158 ILGI 161 (250)
++|-
T Consensus 342 vFGS 345 (479)
T PRK05452 342 AFGS 345 (479)
T ss_pred EEEC
Confidence 5664
No 392
>PRK09932 glycerate kinase II; Provisional
Probab=23.86 E-value=86 Score=29.83 Aligned_cols=44 Identities=16% Similarity=0.012 Sum_probs=29.8
Q ss_pred HHHhcccCCEEEECCCCCCCcc-chHH-HHHHHHHHHHhCCCCCCceEEccc
Q 025574 113 LFEKLELVNGVLYTGGWAKDGL-YYAI-VEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 113 l~~~l~~~dgvIlpGG~~~~~~-~~~~-~~~li~~~~~~~~~g~~~PILGIC 162 (250)
+++.++.+| +|++|=+.+|.. ..+. --.+.+.+.+.+ +|+..||
T Consensus 278 l~~~l~~AD-lVITGEG~~D~Qt~~GK~p~~Va~~A~~~~-----~Pvi~i~ 323 (381)
T PRK09932 278 LEQAVQGAA-LVITGEGRIDSQTAGGKAPLGVASVAKQFN-----VPVIGIA 323 (381)
T ss_pred hHHHhccCC-EEEECCCcccccccCCccHHHHHHHHHHcC-----CCEEEEe
Confidence 355678888 778886654332 2222 236778887888 9999999
No 393
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=23.77 E-value=3.2e+02 Score=21.99 Aligned_cols=77 Identities=10% Similarity=0.072 Sum_probs=43.5
Q ss_pred HHHHHHc-CCeEEEeecCC--ChhhHHHhc--ccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 91 VKFVESA-GARVIPLIYNE--PEDVLFEKL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 91 v~~le~~-G~~~v~i~~~~--~~~~l~~~l--~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
.++|++. |..+..+.... ...++.+.+ ..+|.||.+.-+............+.+.|++.+ +|++=-=-+.
T Consensus 42 a~~L~~~~Gi~v~~vi~~~~gg~~~i~~~I~~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~-----IP~~T~l~tA 116 (142)
T PRK05234 42 GGLIQEATGLDVTRLLSGPLGGDQQIGALIAEGKIDMLIFFRDPLTAQPHDPDVKALLRLADVWN-----IPVATNRATA 116 (142)
T ss_pred HHHHHhccCCeeEEEEcCCCCCchhHHHHHHcCceeEEEEecCCCCCCcccchHHHHHHHHHHcC-----CCEEcCHHHH
Confidence 4577777 87665552210 112233333 357888887522211111112336778888999 9998776677
Q ss_pred HHHHHHh
Q 025574 166 ELLTMII 172 (250)
Q Consensus 166 QlL~~~~ 172 (250)
..+..++
T Consensus 117 ~a~~~al 123 (142)
T PRK05234 117 DFLISSL 123 (142)
T ss_pred HHHHHHH
Confidence 7766654
No 394
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=23.69 E-value=3.1e+02 Score=26.87 Aligned_cols=47 Identities=19% Similarity=0.245 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHcCCeEEE-eecCCChhhHHHhcc-cCCEEEECCCCCC
Q 025574 85 YIAASYVKFVESAGARVIP-LIYNEPEDVLFEKLE-LVNGVLYTGGWAK 131 (250)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~-i~~~~~~~~l~~~l~-~~dgvIlpGG~~~ 131 (250)
..+++-.++-..+|+++.- +.++.+..+++++.+ +.|-|+|.||-+-
T Consensus 84 ~TaeAAk~AAlgAGA~V~~~~a~~l~~~~l~~I~~~~PDIILLaGGtDG 132 (463)
T TIGR01319 84 ITAEAAKRAAHGAGAKIANVYAYDLNNKDIEAIEESNLDIILFAGGTDG 132 (463)
T ss_pred hhHHHHHHHHhcCCcEEEEEEeecCCHHHHHHHhhcCCCEEEEeCCcCC
Confidence 4456666677789998875 556556666655432 5899999999873
No 395
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=23.39 E-value=3.7e+02 Score=24.10 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccch--HHHHHHHHHHHHhC
Q 025574 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY--AIVEKVFKKILEKN 150 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~--~~~~~li~~~~~~~ 150 (250)
+|...++..|.+++.++ +.+.+.+.+++.+.++++--....+... +..+++.+.+.+.+
T Consensus 98 ~~~~~~~~~g~~~~~~~---d~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~ 158 (330)
T TIGR01140 98 EYARAWRAAGHEVVELP---DLDRLPAALEELDVLVLCNPNNPTGRLIPPETLLALAARLRARG 158 (330)
T ss_pred HHHHHHHHcCCEEEEeC---CHHHHHhhcccCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcC
Confidence 35567889999888876 5667776677777777754321111111 12345666665444
No 396
>PRK05989 cobN cobaltochelatase subunit CobN; Reviewed
Probab=23.04 E-value=3.7e+02 Score=29.72 Aligned_cols=94 Identities=21% Similarity=0.289 Sum_probs=54.3
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC-----hhhHHHhc-c--cCCEEEECCCCCCC
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-----EDVLFEKL-E--LVNGVLYTGGWAKD 132 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~-----~~~l~~~l-~--~~dgvIlpGG~~~~ 132 (250)
|+|||+-...... .....++. .+++.||+.|..++++-...- .+.+...+ . .+|.||-+.+....
T Consensus 202 p~vgilfyr~~~~------~~~~~~id-ali~~Le~~G~nvipvf~~~~k~~~~~~~~~~~~~~~~~vd~ii~~~~f~l~ 274 (1244)
T PRK05989 202 PTVAILFYRAHLQ------AGNTAPID-ALIAALEARGLNPLPVFVSSLKDAESPEVLEDLFNADALVDAVLNATGFALA 274 (1244)
T ss_pred CeEEEEEecchhc------cCCcHHHH-HHHHHHHHCCCeEEEEEecCccccchHHHHHHHhcCCCCccEEEEcCCcccc
Confidence 9999987654322 13445554 488999999999988754322 23344444 2 37888855554422
Q ss_pred ccchHHHHHHHHHHHHhCCCCCCceEE-cccchhHHHHHHh
Q 025574 133 GLYYAIVEKVFKKILEKNDAGDHFPLY-AHCLGFELLTMII 172 (250)
Q Consensus 133 ~~~~~~~~~li~~~~~~~~~g~~~PIL-GIClG~QlL~~~~ 172 (250)
. .... .+...+.| +||| +|+.+ |-.....
T Consensus 275 ~--~~~~---~~~l~~ln-----vPVlq~i~~~-~~~~~W~ 304 (1244)
T PRK05989 275 A--AAWD---VEVLAALD-----VPVLQVICSG-GNREAWE 304 (1244)
T ss_pred C--cchh---hHHHHHCC-----CCEEEEeeCC-CCHHHHh
Confidence 1 0011 23333557 9987 45555 5555553
No 397
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=23.04 E-value=71 Score=25.90 Aligned_cols=54 Identities=22% Similarity=0.289 Sum_probs=36.0
Q ss_pred HHHHHHHcCCeEEEeecCC----------ChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHH
Q 025574 90 YVKFVESAGARVIPLIYNE----------PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKIL 147 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~----------~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~ 147 (250)
+++.+++.+.++.++..+. +.+...+.++.+|.++++|-.-.+. +.+.+++.+.
T Consensus 23 ~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGsTlvN~----Ti~~iL~~~~ 86 (147)
T PF04016_consen 23 LVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGSTLVNG----TIDDILELAR 86 (147)
T ss_dssp CHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECHHCCTT----THHHHHHHTT
T ss_pred HHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEeeeeecC----CHHHHHHhCc
Confidence 4566777788888776553 2334566789999999999866443 3556777664
No 398
>PRK15453 phosphoribulokinase; Provisional
Probab=22.83 E-value=1.8e+02 Score=26.60 Aligned_cols=39 Identities=10% Similarity=0.244 Sum_probs=28.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN 107 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~ 107 (250)
..|+|||++.++. +.+.+++.+.+.+...|..+.++..+
T Consensus 4 k~piI~ItG~SGs----------GKTTva~~l~~if~~~~~~~~vi~~D 42 (290)
T PRK15453 4 KHPIIAVTGSSGA----------GTTTVKRAFEKIFRRENINAAVVEGD 42 (290)
T ss_pred CCcEEEEECCCCC----------CHHHHHHHHHHHHhhcCCCeEEEecc
Confidence 4589999987764 46777888888887777666666543
No 399
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=22.75 E-value=1.6e+02 Score=23.73 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCC
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGW 129 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~ 129 (250)
...++||+.+|.+++..+ +.+++++......=+.||||-.-
T Consensus 10 ~~Lar~LR~lG~Dt~~~~-~~~D~~il~~A~~e~RillTrd~ 50 (147)
T PF01927_consen 10 GRLARWLRLLGYDTLYSR-DIDDDEILELAREEGRILLTRDR 50 (147)
T ss_pred HHHHHHHHHCCCcEEEeC-CCChHHHHHHhhhCCeEEEECCH
Confidence 357899999999998766 33445555444455788888653
No 400
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.54 E-value=2.6e+02 Score=24.17 Aligned_cols=100 Identities=17% Similarity=0.168 Sum_probs=57.6
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC--hhhHHHhcccCCEEEECCCCCCCccc
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--EDVLFEKLELVNGVLYTGGWAKDGLY 135 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~--~~~l~~~l~~~dgvIlpGG~~~~~~~ 135 (250)
...++|.|+..... .. +...++.+.+.|.+++.+.++.+ .+.+..+-+.+..+++--|.-.++.-
T Consensus 13 ~~~~~iaV~r~~~~-----------~~--a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~ 79 (212)
T PRK05718 13 RAGPVVPVIVINKL-----------ED--AVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQ 79 (212)
T ss_pred HHCCEEEEEEcCCH-----------HH--HHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHH
Confidence 45688888764421 11 23477889999999998887653 22233322334444443333222211
Q ss_pred hH--------------HHHHHHHHHHHhCCCCCCceEE-cccchhHHHHHH-hcCc
Q 025574 136 YA--------------IVEKVFKKILEKNDAGDHFPLY-AHCLGFELLTMI-ISKD 175 (250)
Q Consensus 136 ~~--------------~~~~li~~~~~~~~~g~~~PIL-GIClG~QlL~~~-~GG~ 175 (250)
.+ ...++++.+.+.+ +|++ |++-=-++.... +|-+
T Consensus 80 a~~a~~aGA~FivsP~~~~~vi~~a~~~~-----i~~iPG~~TptEi~~a~~~Ga~ 130 (212)
T PRK05718 80 LAQAIEAGAQFIVSPGLTPPLLKAAQEGP-----IPLIPGVSTPSELMLGMELGLR 130 (212)
T ss_pred HHHHHHcCCCEEECCCCCHHHHHHHHHcC-----CCEeCCCCCHHHHHHHHHCCCC
Confidence 11 0248899998888 9999 988666655333 4544
No 401
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=22.53 E-value=3.2e+02 Score=22.95 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=35.3
Q ss_pred CcchhhHHHHHHHHHHc-CCeEEEeecCCC--hhhH---------------HHhcccCCEEEECCCCCCCccchHHHHHH
Q 025574 81 TNASYIAASYVKFVESA-GARVIPLIYNEP--EDVL---------------FEKLELVNGVLYTGGWAKDGLYYAIVEKV 142 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~-G~~~v~i~~~~~--~~~l---------------~~~l~~~dgvIlpGG~~~~~~~~~~~~~l 142 (250)
+...-+++.+.+-+++. |+++.++...+. .+.+ .+.+..+|+|+|-- |.....+....+.+
T Consensus 12 G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GS-Pty~g~~~~~lk~f 90 (197)
T TIGR01755 12 GHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGT-PTRFGNMASQMRNF 90 (197)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEe-cccccCccHHHHHH
Confidence 34555677777788875 888877664321 1111 13466789987743 33223333334455
Q ss_pred HHHH
Q 025574 143 FKKI 146 (250)
Q Consensus 143 i~~~ 146 (250)
++..
T Consensus 91 ld~~ 94 (197)
T TIGR01755 91 LDQT 94 (197)
T ss_pred HHhc
Confidence 5544
No 402
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=22.30 E-value=4e+02 Score=21.08 Aligned_cols=61 Identities=13% Similarity=-0.039 Sum_probs=39.3
Q ss_pred HHHHH-HHHHHcCCeEEEeecCCChhhHHHhc--ccCCEEEECCCCCCCccchHHHHHHHHHHHHhC
Q 025574 87 AASYV-KFVESAGARVIPLIYNEPEDVLFEKL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (250)
Q Consensus 87 ~~s~v-~~le~~G~~~v~i~~~~~~~~l~~~l--~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~ 150 (250)
.+.++ .+|+.+|++|+-...+.++++.-+.. .++|.|.+++=- ..+....+.+++...+++
T Consensus 18 g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~---~~~~~~~~~~~~~L~~~g 81 (132)
T TIGR00640 18 GAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLA---GGHLTLVPALRKELDKLG 81 (132)
T ss_pred HHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCch---hhhHHHHHHHHHHHHhcC
Confidence 34444 47899999999887776666553322 357888887643 234445567777765554
No 403
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=22.16 E-value=2.5e+02 Score=23.99 Aligned_cols=104 Identities=14% Similarity=0.160 Sum_probs=56.4
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC--hhhHHHhcccCCEEEECCCCCCCccchH
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--EDVLFEKLELVNGVLYTGGWAKDGLYYA 137 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~--~~~l~~~l~~~dgvIlpGG~~~~~~~~~ 137 (250)
.++|.|+..... . -+...++++-+.|.+.+.+.++.+ .+.+....+++..+++-=|...+..-.+
T Consensus 8 ~~iiaVir~~~~-----------~--~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~ 74 (196)
T PF01081_consen 8 NKIIAVIRGDDP-----------E--DAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAE 74 (196)
T ss_dssp HSEEEEETTSSG-----------G--GHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHH
T ss_pred CCEEEEEEcCCH-----------H--HHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHH
Confidence 477888764421 1 134578899999999999988754 2223322334455555334433322221
Q ss_pred H--------------HHHHHHHHHHhCCCCCCceEE-cccchhHHHHHH-hcCccccccccc
Q 025574 138 I--------------VEKVFKKILEKNDAGDHFPLY-AHCLGFELLTMI-ISKDKNILESFN 183 (250)
Q Consensus 138 ~--------------~~~li~~~~~~~~~g~~~PIL-GIClG~QlL~~~-~GG~~~~l~~~~ 183 (250)
. .+++++++.+.+ +|++ |++-=-+++... +|-+ .+.-|+
T Consensus 75 ~a~~aGA~FivSP~~~~~v~~~~~~~~-----i~~iPG~~TptEi~~A~~~G~~--~vK~FP 129 (196)
T PF01081_consen 75 AAIAAGAQFIVSPGFDPEVIEYAREYG-----IPYIPGVMTPTEIMQALEAGAD--IVKLFP 129 (196)
T ss_dssp HHHHHT-SEEEESS--HHHHHHHHHHT-----SEEEEEESSHHHHHHHHHTT-S--EEEETT
T ss_pred HHHHcCCCEEECCCCCHHHHHHHHHcC-----CcccCCcCCHHHHHHHHHCCCC--EEEEec
Confidence 1 358899999999 8887 455444544443 3444 344444
No 404
>PRK14057 epimerase; Provisional
Probab=21.77 E-value=4.1e+02 Score=23.83 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=28.4
Q ss_pred HHHHHHHHcCCe----------EEEeecCCChhhHHHhcccCCEEEECC
Q 025574 89 SYVKFVESAGAR----------VIPLIYNEPEDVLFEKLELVNGVLYTG 127 (250)
Q Consensus 89 s~v~~le~~G~~----------~v~i~~~~~~~~l~~~l~~~dgvIlpG 127 (250)
...+++++.|++ -+.+...++.+.+...++.+|.|++..
T Consensus 114 ~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMt 162 (254)
T PRK14057 114 HTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLA 162 (254)
T ss_pred HHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEEEE
Confidence 356788888863 345555667888888888999888843
No 405
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=21.76 E-value=2.4e+02 Score=27.40 Aligned_cols=84 Identities=19% Similarity=0.236 Sum_probs=47.9
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHc--CCeEEEeecCC----ChhhHHH------hcccCCEEEE
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA--GARVIPLIYNE----PEDVLFE------KLELVNGVLY 125 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~--G~~~v~i~~~~----~~~~l~~------~l~~~dgvIl 125 (250)
..--.|||+|.|.... -+.+.+-+.+. ..+++++|..- ..+++-+ ....+|.||+
T Consensus 133 ~~p~~IGVITS~tgAa-------------irDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIV 199 (440)
T COG1570 133 FFPKKIGVITSPTGAA-------------LRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIV 199 (440)
T ss_pred CCCCeEEEEcCCchHH-------------HHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEE
Confidence 3345899999884311 23455556543 35565555421 1222221 2345787777
Q ss_pred C-CCCCCCccchHHHHHHHHHHHHhCCCCCCceEE
Q 025574 126 T-GGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 126 p-GG~~~~~~~~~~~~~li~~~~~~~~~g~~~PIL 159 (250)
. ||+++..-|.-..+.+.+.+.+.. +||.
T Consensus 200 aRGGGSiEDLW~FNdE~vaRAi~~s~-----iPvI 229 (440)
T COG1570 200 ARGGGSIEDLWAFNDEIVARAIAASR-----IPVI 229 (440)
T ss_pred ecCcchHHHHhccChHHHHHHHHhCC-----CCeE
Confidence 5 555555444433457788888888 9986
No 406
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=21.73 E-value=4.5e+02 Score=22.52 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHcCCeEEEeecCC----Chhh----HHHhc-ccCCEEEECCC
Q 025574 86 IAASYVKFVESAGARVIPLIYNE----PEDV----LFEKL-ELVNGVLYTGG 128 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~----~~~~----l~~~l-~~~dgvIlpGG 128 (250)
+...+.+.+++.|..+++..+.. +.+. +...+ +++||||+.+.
T Consensus 18 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~ 69 (280)
T cd06303 18 NIASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLD 69 (280)
T ss_pred HHHHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 45567788888998887654321 1111 11212 47999999865
No 407
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=21.72 E-value=2e+02 Score=25.51 Aligned_cols=36 Identities=8% Similarity=0.146 Sum_probs=23.7
Q ss_pred EEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccch
Q 025574 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (250)
Q Consensus 122 gvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG 164 (250)
-|+|+.|.+... ....+++++.+.+.+ ++|..|..|
T Consensus 168 iIllTDG~~~~~--~~~~~~~~~~~~~~~-----v~vy~I~~~ 203 (296)
T TIGR03436 168 LIVISDGGDNRS--RDTLERAIDAAQRAD-----VAIYSIDAR 203 (296)
T ss_pred EEEEecCCCcch--HHHHHHHHHHHHHcC-----CEEEEeccC
Confidence 577787765321 223346677776677 999999886
No 408
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=21.58 E-value=95 Score=29.40 Aligned_cols=44 Identities=20% Similarity=0.058 Sum_probs=26.7
Q ss_pred HHHhcccCCEEEECCCCCCCc-cchHHH-HHHHHHHHHhCCCCCCceEEccc
Q 025574 113 LFEKLELVNGVLYTGGWAKDG-LYYAIV-EKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 113 l~~~l~~~dgvIlpGG~~~~~-~~~~~~-~~li~~~~~~~~~g~~~PILGIC 162 (250)
+++.++++|-| ++|=+-++. ...+.. -.+-+.+.+.+ +|+++||
T Consensus 278 le~~v~daDLV-ITGEGr~D~Qs~~GK~pigVA~~Akk~~-----vPvIaia 323 (378)
T COG1929 278 LEDAVKDADLV-ITGEGRIDSQSLHGKTPIGVAKLAKKYG-----VPVIAIA 323 (378)
T ss_pred HHHhhccCCEE-EeCCCcccccccCCccchHHHHhhhhhC-----CCEEEEe
Confidence 34567788855 555333322 222222 26667777778 9999999
No 409
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=21.56 E-value=4.1e+02 Score=22.95 Aligned_cols=63 Identities=14% Similarity=-0.004 Sum_probs=36.0
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHh-cccCCEEEECCC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGG 128 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dgvIlpGG 128 (250)
+...+||++..... .....-+...+.+++++.|..+.......+.+. +... -.++||||+.+.
T Consensus 33 ~~~~~ig~v~~~~~--------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 100 (309)
T PRK11041 33 NESRTILVIVPDIC--------DPFFSEIIRGIEVTAAEHGYLVLIGDCAHQNQQEKTFVNLIITKQIDGMLLLGS 100 (309)
T ss_pred CCCcEEEEEeCCCc--------CccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 34468999874321 112233445577788888988876654433221 1111 246899999764
No 410
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=21.51 E-value=4.4e+02 Score=25.19 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=33.5
Q ss_pred chhhHHHHHHHHHHcCCeEEEeecC-CChhhHHHhcccCCEEEECCCCC
Q 025574 83 ASYIAASYVKFVESAGARVIPLIYN-EPEDVLFEKLELVNGVLYTGGWA 130 (250)
Q Consensus 83 ~~~i~~s~v~~le~~G~~~v~i~~~-~~~~~l~~~l~~~dgvIlpGG~~ 130 (250)
..-++..+.+-|.+.|..|+++... .+.+++.+.+.+++|+++ |.|.
T Consensus 260 T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vv-GsPT 307 (388)
T COG0426 260 TEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVV-GSPT 307 (388)
T ss_pred HHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEE-ecCc
Confidence 3445666778889999998887754 356667777778899877 4443
No 411
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=21.50 E-value=5e+02 Score=21.89 Aligned_cols=68 Identities=15% Similarity=0.085 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCeEEEeecCCCh---hhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccch
Q 025574 88 ASYVKFVESAGARVIPLIYNEPE---DVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~---~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG 164 (250)
..+.+.+++.|..++........ +.+...++..|+|+.++-.. ..+....+.+..+..+ +|++|..--
T Consensus 150 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~dai~~~~d~~----a~~~~~~~~~~~~~~~-----ipvig~d~~ 220 (281)
T cd06325 150 KELKKAAAKLGIEVVEATVSSSNDVQQAAQSLAGKVDAIYVPTDNT----VASAMEAVVKVANEAK-----IPVIASDDD 220 (281)
T ss_pred HHHHHHHHhCCCEEEEEecCCHHHHHHHHHHhcccCCEEEEcCchh----HHhHHHHHHHHHHHcC-----CCEEEcCHH
Confidence 45777888888866543222211 22334444568888765332 1112223333332335 999998864
No 412
>PRK01355 azoreductase; Reviewed
Probab=21.46 E-value=4.8e+02 Score=21.75 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=24.2
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHc--CCeEEEeec
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA--GARVIPLIY 106 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~--G~~~v~i~~ 106 (250)
..++.|.++|.... .....-+++.+++.+++. |.++..+..
T Consensus 2 ~kIliI~gSpr~~~------~s~s~~l~~~~~~~~~~~~~~~~v~~~dL 44 (199)
T PRK01355 2 SKVLVIKGSMVAKE------KSFSSALTDKFVEEYKKVNPNDEIIILDL 44 (199)
T ss_pred CeEEEEECCCCCCC------CcHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 45778888885211 123345667788888774 466655543
No 413
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=21.26 E-value=1.3e+02 Score=27.94 Aligned_cols=41 Identities=27% Similarity=0.389 Sum_probs=29.3
Q ss_pred EEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHH
Q 025574 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLT 169 (250)
Q Consensus 122 gvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~ 169 (250)
||+.+||+. |.+-.....+++.+.+.+ .=|+|+..|+.=|.
T Consensus 4 ~Il~sGG~a--pG~N~~i~~~v~~~~~~g-----~~v~G~~~G~~GL~ 44 (338)
T cd00363 4 GVLTSGGDA--PGMNAAIRGVVRSAIAEG-----LEVYGIYEGYAGLV 44 (338)
T ss_pred EEEccCCCc--hhHHHHHHHHHHHHHHCC-----CEEEEEecChHHhC
Confidence 566777766 555555567778877666 78999999997554
No 414
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=21.23 E-value=6.8e+02 Score=23.98 Aligned_cols=16 Identities=19% Similarity=0.164 Sum_probs=12.2
Q ss_pred hcccCCEEEECCCCCC
Q 025574 116 KLELVNGVLYTGGWAK 131 (250)
Q Consensus 116 ~l~~~dgvIlpGG~~~ 131 (250)
.++++|.+|..||..+
T Consensus 114 ~l~~aDlvI~gGG~lf 129 (426)
T PRK10017 114 LLSGYDAIIQVGGSFF 129 (426)
T ss_pred HHHhCCEEEECCCCcc
Confidence 3678899998877654
No 415
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=21.18 E-value=1.3e+02 Score=27.80 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=29.6
Q ss_pred EEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHH
Q 025574 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLT 169 (250)
Q Consensus 122 gvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~ 169 (250)
+|+.+||+. |.+-.....+++.+...+ .-|+|+-.|+.=|.
T Consensus 4 aIltsGG~a--pGmNa~i~~vv~~a~~~g-----~~v~G~~~G~~GL~ 44 (317)
T cd00763 4 GVLTSGGDA--PGMNAAIRGVVRSAIAEG-----LEVYGIRDGYAGLI 44 (317)
T ss_pred EEEccCCCc--HHHHHHHHHHHHHHHHCC-----CEEEEEecCHHHhc
Confidence 466666665 555545567788887766 78999999998665
No 416
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=21.10 E-value=5e+02 Score=23.19 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=37.2
Q ss_pred HHHHHHHcCCeEEEee-cCCChhhHHHhcccCCEEEE----CCCCCCCccchHHHHHHHHHHHHhCCCCCCceEE---cc
Q 025574 90 YVKFVESAGARVIPLI-YNEPEDVLFEKLELVNGVLY----TGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY---AH 161 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~-~~~~~~~l~~~l~~~dgvIl----pGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PIL---GI 161 (250)
+.+.+++.|..++.+- .+++.+.+....+..+|.|. +|-.+..........++++.+.+.. ..|+. ||
T Consensus 136 ~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t----~~Pi~vGFGI 211 (263)
T CHL00200 136 LISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT----NKPIILGFGI 211 (263)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc----CCCEEEECCc
Confidence 4455566665554332 33345666666677776554 3433322233333445555554432 17763 44
Q ss_pred cchhHHHH
Q 025574 162 CLGFELLT 169 (250)
Q Consensus 162 ClG~QlL~ 169 (250)
.-.-|.-.
T Consensus 212 ~~~e~~~~ 219 (263)
T CHL00200 212 STSEQIKQ 219 (263)
T ss_pred CCHHHHHH
Confidence 44434433
No 417
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=21.00 E-value=3.7e+02 Score=20.17 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=36.8
Q ss_pred HHHHHHHcCCeEEEeecCCChhhHHHhc--ccCCEEEECCCCCCCccchHHHHHHHHHHHHh
Q 025574 90 YVKFVESAGARVIPLIYNEPEDVLFEKL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEK 149 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~~~~~l~~~l--~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~ 149 (250)
+..++++.|.+++.+..+.+.+++.+.+ .++|.|.++.--. .......++++.+.+.
T Consensus 19 ~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~---~~~~~~~~~i~~l~~~ 77 (119)
T cd02067 19 VARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLT---THMTLMKEVIEELKEA 77 (119)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccc---ccHHHHHHHHHHHHHc
Confidence 3358899999998776666666665433 3578888887532 2334455666766554
No 418
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=20.98 E-value=2.5e+02 Score=24.17 Aligned_cols=88 Identities=14% Similarity=0.136 Sum_probs=51.7
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC--hhhHHHhcccCCEEEECCCCCCCccc
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--EDVLFEKLELVNGVLYTGGWAKDGLY 135 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~--~~~l~~~l~~~dgvIlpGG~~~~~~~ 135 (250)
...|+|.|+..... .. +...++.+.+.|.+++.+.++.+ .+.+....+.+..+++--|.-.++.-
T Consensus 6 ~~~~liaVlr~~~~-----------e~--a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~ 72 (204)
T TIGR01182 6 REAKIVPVIRIDDV-----------DD--ALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQ 72 (204)
T ss_pred hhCCEEEEEecCCH-----------HH--HHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHH
Confidence 45688888764421 11 23477899999999999887653 22233333445555554454333221
Q ss_pred hHH--------------HHHHHHHHHHhCCCCCCceEEcccc
Q 025574 136 YAI--------------VEKVFKKILEKNDAGDHFPLYAHCL 163 (250)
Q Consensus 136 ~~~--------------~~~li~~~~~~~~~g~~~PILGICl 163 (250)
.+. ..++++.+.+.+ +|++==|+
T Consensus 73 a~~a~~aGA~FivsP~~~~~v~~~~~~~~-----i~~iPG~~ 109 (204)
T TIGR01182 73 LRQAVDAGAQFIVSPGLTPELAKHAQDHG-----IPIIPGVA 109 (204)
T ss_pred HHHHHHcCCCEEECCCCCHHHHHHHHHcC-----CcEECCCC
Confidence 111 248889998888 88775333
No 419
>PRK06696 uridine kinase; Validated
Probab=20.64 E-value=2.5e+02 Score=23.84 Aligned_cols=37 Identities=14% Similarity=0.085 Sum_probs=28.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEee
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI 105 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~ 105 (250)
...+|||.+.++ .+.+.+++.+++.|...|..++.+.
T Consensus 21 ~~~iI~I~G~sg----------sGKSTlA~~L~~~l~~~g~~v~~~~ 57 (223)
T PRK06696 21 RPLRVAIDGITA----------SGKTTFADELAEEIKKRGRPVIRAS 57 (223)
T ss_pred CceEEEEECCCC----------CCHHHHHHHHHHHHHHcCCeEEEec
Confidence 457999988775 3567888888888988887776654
No 420
>PRK13055 putative lipid kinase; Reviewed
Probab=20.49 E-value=5.3e+02 Score=23.53 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=25.1
Q ss_pred HHHHHHHHHcCCeEEEeecC-C--ChhhHH-Hh-cccCCEEEECCCCC
Q 025574 88 ASYVKFVESAGARVIPLIYN-E--PEDVLF-EK-LELVNGVLYTGGWA 130 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~-~--~~~~l~-~~-l~~~dgvIlpGG~~ 130 (250)
..+.+.+++.|..+.+.... . ..+.+. +. .+.+|.||+.||-+
T Consensus 23 ~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDG 70 (334)
T PRK13055 23 ADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDG 70 (334)
T ss_pred HHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCC
Confidence 44677889999876544322 1 222222 22 23578899888865
No 421
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=20.48 E-value=3.7e+02 Score=23.59 Aligned_cols=51 Identities=25% Similarity=0.247 Sum_probs=31.2
Q ss_pred hhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHH
Q 025574 111 DVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (250)
Q Consensus 111 ~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~ 170 (250)
+++.+.++.+|.+++.||-.. +.. ...+++.+.+.+ +|+.-=--|..++..
T Consensus 84 ~~~~~~~~~~davvig~Gl~~-~~~---~~~l~~~~~~~~-----~pvVlDa~g~~l~~~ 134 (272)
T TIGR00196 84 DEDEELLERYDVVVIGPGLGQ-DPS---FKKAVEEVLELD-----KPVVLDADALNLLTY 134 (272)
T ss_pred HHHHhhhccCCEEEEcCCCCC-CHH---HHHHHHHHHhcC-----CCEEEEhHHHHHHhh
Confidence 344455677899999766332 211 345667776666 888766666666554
No 422
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=20.41 E-value=95 Score=24.19 Aligned_cols=44 Identities=16% Similarity=0.074 Sum_probs=21.3
Q ss_pred HHhcccCCEEEECCCCCC-CccchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 114 FEKLELVNGVLYTGGWAK-DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 114 ~~~l~~~dgvIlpGG~~~-~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
.+.++..+.+|+.-|... ...| ...=++.+++.+ +||+||.+.-
T Consensus 65 ~~~i~~s~~~IVLig~~T~~s~w---V~~EI~~A~~~~-----~~Ii~V~~~~ 109 (130)
T PF08937_consen 65 RERIKNSSVTIVLIGPNTAKSKW---VNWEIEYALKKG-----KPIIGVYLPG 109 (130)
T ss_dssp HHHHHTEEEEEEE--TT----HH---HHHHHHHHTTT--------EEEEETT-
T ss_pred HHHHhcCCEEEEEeCCCcccCcH---HHHHHHHHHHCC-----CCEEEEECCC
Confidence 344566677766666652 1122 222356677777 9999998643
No 423
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=20.21 E-value=2.5e+02 Score=24.57 Aligned_cols=108 Identities=15% Similarity=0.114 Sum_probs=63.2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC--hhhHHHhcccCCEEEECCCCCCCccc
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--EDVLFEKLELVNGVLYTGGWAKDGLY 135 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~--~~~l~~~l~~~dgvIlpGG~~~~~~~ 135 (250)
...|+|.|+....- . -+-..+++|-+.|.+.+.|+++.+ .+.+....+.+-.+++--|-..++.-
T Consensus 11 ~~~~vI~Vlr~~~~-----------e--~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q 77 (211)
T COG0800 11 KAQPVVPVIRGDDV-----------E--EALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQ 77 (211)
T ss_pred HHCCeeEEEEeCCH-----------H--HHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEccccccCHHH
Confidence 45689999875532 1 133477899999999999988754 33444444445555555555444322
Q ss_pred hHH--------------HHHHHHHHHHhCCCCCCceEE-cccchhHHHHHHhcCcccccccccC
Q 025574 136 YAI--------------VEKVFKKILEKNDAGDHFPLY-AHCLGFELLTMIISKDKNILESFNA 184 (250)
Q Consensus 136 ~~~--------------~~~li~~~~~~~~~g~~~PIL-GIClG~QlL~~~~GG~~~~l~~~~~ 184 (250)
.+. ..++++.+.+.+ +|++ |+=-=.+++.-..-|- +.+.-|+.
T Consensus 78 ~~~a~~aGa~fiVsP~~~~ev~~~a~~~~-----ip~~PG~~TptEi~~Ale~G~-~~lK~FPa 135 (211)
T COG0800 78 ARQAIAAGAQFIVSPGLNPEVAKAANRYG-----IPYIPGVATPTEIMAALELGA-SALKFFPA 135 (211)
T ss_pred HHHHHHcCCCEEECCCCCHHHHHHHHhCC-----CcccCCCCCHHHHHHHHHcCh-hheeecCc
Confidence 221 248899998888 9976 3333344444443332 24444543
No 424
>PF00920 ILVD_EDD: Dehydratase family; InterPro: IPR000581 Two dehydratases, dihydroxy-acid dehydratase (4.2.1.9 from EC) (gene ilvD or ILV3) and 6-phosphogluconate dehydratase (4.2.1.12 from EC) (gene edd) have been shown to be evolutionary related []. Dihydroxy-acid dehydratase catalyses the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyses the first step in the Entner-Doudoroff pathway, the dehydratation of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. Another protein containing this signature is the Escherichia coli hypothetical protein yjhG. The N-terminal part of the proteins contains a cysteine that could be involved in the binding of a 2Fe-2S iron-sulphur cluster [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GP4_B.
Probab=20.19 E-value=83 Score=31.21 Aligned_cols=97 Identities=18% Similarity=0.167 Sum_probs=21.6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC-----------------ChhhH----HH--h
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-----------------PEDVL----FE--K 116 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~-----------------~~~~l----~~--~ 116 (250)
||+|||.....+..++. .+..-+++...+-++++|+.+..++... +.|.+ .. .
T Consensus 1 KP~IgI~ns~~e~~Pc~----~hl~~la~~vk~gi~~aGG~p~ef~ti~v~Dgi~~g~~GM~ysL~sRelIAd~iE~~~~ 76 (521)
T PF00920_consen 1 KPIIGIVNSWSEINPCH----MHLRELAEAVKEGIRAAGGVPFEFNTIAVCDGIAMGTEGMRYSLPSRELIADSIEEMVR 76 (521)
T ss_dssp ----------------------------------SS---EEEE---B---------SSSGGGGHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeccccCCccc----hhHHHHHHHHHHHHHHcCCeEEEECCCcccchhcCCccccchhhhhHHHHHHHHHHHHh
Confidence 79999988776544321 2223344556667788898776554322 01111 11 1
Q ss_pred cccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 117 LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 117 l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
...+||+|+-||-+..- ...+-.+...| +|-+=+.=|-++=...
T Consensus 77 a~~~Dg~V~l~gCDK~~------Pg~lMaaarln-----iPsi~v~gGpm~~G~~ 120 (521)
T PF00920_consen 77 AHPFDGMVLLGGCDKIV------PGMLMAAARLN-----IPSIFVYGGPMLPGKY 120 (521)
T ss_dssp T---SEEEEE--STTCC------HHHHHHHHTTT-----S-EEE-----------
T ss_pred CCCcceEEEeccCCCcc------HHHHHHHHHcC-----CCEEEEecCCCCCCcc
Confidence 23578999988888421 12333444556 7877555444443333
No 425
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=20.04 E-value=1.6e+02 Score=24.69 Aligned_cols=42 Identities=26% Similarity=0.211 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCeEEEeecCC-----ChhhHHHh---cc--cCCEEEECCCCC
Q 025574 89 SYVKFVESAGARVIPLIYNE-----PEDVLFEK---LE--LVNGVLYTGGWA 130 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~-----~~~~l~~~---l~--~~dgvIlpGG~~ 130 (250)
.+.+.|++.|++++.+|.-. +.+.+... +. .+|+|||+-..+
T Consensus 2 ~l~~~l~~~G~~~~~~P~i~~~~~~~~~~l~~~l~~l~~~~~d~viftS~~a 53 (231)
T PF02602_consen 2 ELAALLRALGAEVIELPLIEIEPLPDLASLEAALEQLPPGNYDWVIFTSPNA 53 (231)
T ss_dssp HHHHHHHHTTEEEEEEESEEEEECCHHHHHHHHHHHHTGCCSSEEEESSHHH
T ss_pred HHHHHHHHCCCcEEEECCEEEEeCCCHHHHHHHHHhcccCCCCEEEEECHHH
Confidence 36778999999998877532 12223322 33 899999996654
No 426
>TIGR02257 cobalto_cobN cobaltochelatase, CobN subunit.
Probab=20.01 E-value=4.6e+02 Score=28.71 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=38.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC--C---hhhHHHhcc--cCCEEEECCCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--P---EDVLFEKLE--LVNGVLYTGGWA 130 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~--~---~~~l~~~l~--~~dgvIlpGG~~ 130 (250)
.+|+|||+-...... .....++. .+++.||+.|..++++-... + .+.+...+. .+|.||-+-+..
T Consensus 190 ~~p~vgilfyr~~~~------~~~~~~id-ali~~Le~~G~~~ipvf~~sl~~~~~~~~~~~~~~~~~vd~iin~~~F~ 261 (1122)
T TIGR02257 190 KGPRVGILFYRSLLL------AGDTALIE-ALIDALRQRGLNPVPIFVSSLKDPAVQAGLLDALKEEDPALIITTTGFA 261 (1122)
T ss_pred CCCEEEEEEehhhhh------cCCcHHHH-HHHHHHHHCCCeEEEEEeCCCCchhHHHHHHHhccCCCCcEEEECCccc
Confidence 479999987554321 13344554 48899999999988874331 1 111222222 368888655543
Done!