Query 025574
Match_columns 250
No_of_seqs 291 out of 2117
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 13:05:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9x_A Gamma-glutamyl hydrolas 100.0 4E-29 1.4E-33 226.9 11.9 202 42-249 12-227 (315)
2 3fij_A LIN1909 protein; 11172J 99.9 5E-25 1.7E-29 194.0 13.4 163 59-240 3-197 (254)
3 2vpi_A GMP synthase; guanine m 99.8 7.8E-20 2.7E-24 157.6 7.7 143 59-238 23-169 (218)
4 2a9v_A GMP synthase; structura 99.8 3.4E-19 1.2E-23 152.7 7.3 132 83-240 23-160 (212)
5 4gud_A Imidazole glycerol phos 99.8 8.4E-19 2.9E-23 149.1 7.6 140 88-249 16-173 (211)
6 1i1q_B Anthranilate synthase c 99.8 1.5E-17 5E-22 139.9 14.8 131 87-238 13-149 (192)
7 1qdl_B Protein (anthranilate s 99.7 5.8E-18 2E-22 142.8 11.6 130 88-238 15-153 (195)
8 1wl8_A GMP synthase [glutamine 99.7 6.3E-18 2.2E-22 141.6 11.4 130 88-240 14-147 (189)
9 1gpm_A GMP synthetase, XMP ami 99.7 2E-18 6.9E-23 166.3 8.3 153 59-240 6-162 (525)
10 1o1y_A Conserved hypothetical 99.7 7.4E-18 2.5E-22 146.9 11.2 133 89-240 28-168 (239)
11 3tqi_A GMP synthase [glutamine 99.7 5.4E-18 1.8E-22 163.4 10.1 150 60-238 10-163 (527)
12 3m3p_A Glutamine amido transfe 99.7 4.4E-18 1.5E-22 149.7 8.5 134 88-239 18-157 (250)
13 1a9x_B Carbamoyl phosphate syn 99.7 2.2E-17 7.4E-22 153.2 11.8 155 42-240 155-332 (379)
14 3l7n_A Putative uncharacterize 99.7 3.3E-17 1.1E-21 142.3 11.8 135 89-240 16-161 (236)
15 2ywb_A GMP synthase [glutamine 99.7 6.8E-18 2.3E-22 161.8 4.6 134 82-240 8-145 (503)
16 3uow_A GMP synthetase; structu 99.7 6.4E-17 2.2E-21 156.8 10.4 139 83-239 17-189 (556)
17 2w7t_A CTP synthetase, putativ 99.7 1.3E-16 4.3E-21 141.9 10.8 102 61-176 9-117 (273)
18 3d54_D Phosphoribosylformylgly 99.6 1.2E-15 4.2E-20 129.3 13.0 148 60-243 2-165 (213)
19 2vxo_A GMP synthase [glutamine 99.6 1.1E-16 3.7E-21 158.8 7.0 127 89-238 44-174 (697)
20 2ywd_A Glutamine amidotransfer 99.6 8.1E-17 2.8E-21 134.5 5.0 90 59-174 1-93 (191)
21 1gpw_B Amidotransferase HISH; 99.6 3.8E-16 1.3E-20 131.8 8.4 139 88-248 14-165 (201)
22 1ka9_H Imidazole glycerol phos 99.6 9.1E-16 3.1E-20 129.6 8.6 134 88-249 16-166 (200)
23 2ywj_A Glutamine amidotransfer 99.6 3.3E-16 1.1E-20 130.7 4.8 120 89-238 14-147 (186)
24 1q7r_A Predicted amidotransfer 99.5 1.9E-15 6.6E-20 129.6 2.3 91 58-175 21-114 (219)
25 3r75_A Anthranilate/para-amino 99.5 1.3E-14 4.3E-19 142.8 7.7 135 81-240 454-596 (645)
26 1jvn_A Glutamine, bifunctional 99.5 3.1E-14 1E-18 138.0 7.9 156 60-249 4-184 (555)
27 1vco_A CTP synthetase; tetrame 99.5 1.6E-13 5.4E-18 132.5 12.1 106 58-177 298-406 (550)
28 2v4u_A CTP synthase 2; pyrimid 99.5 1.8E-13 6.2E-18 122.5 9.6 99 59-176 24-140 (289)
29 2iss_D Glutamine amidotransfer 99.4 3.7E-13 1.3E-17 114.4 9.5 87 59-175 19-111 (208)
30 2nv0_A Glutamine amidotransfer 99.4 3.3E-13 1.1E-17 113.2 8.9 123 90-238 16-152 (196)
31 2abw_A PDX2 protein, glutamina 99.3 2.2E-13 7.7E-18 117.0 3.0 90 59-175 2-100 (227)
32 1s1m_A CTP synthase; CTP synth 99.3 3E-12 1E-16 123.5 10.3 99 59-177 288-394 (545)
33 3nva_A CTP synthase; rossman f 99.3 7.2E-12 2.5E-16 119.8 11.2 100 59-176 292-400 (535)
34 2vdj_A Homoserine O-succinyltr 99.2 1.8E-10 6.3E-15 103.6 15.2 109 117-243 97-218 (301)
35 2h2w_A Homoserine O-succinyltr 99.2 3.3E-10 1.1E-14 102.4 13.0 108 117-243 109-229 (312)
36 3ugj_A Phosphoribosylformylgly 98.9 2.8E-09 9.4E-14 111.6 8.8 90 59-171 1046-1152(1303)
37 3l4e_A Uncharacterized peptida 98.6 5.3E-08 1.8E-12 82.9 7.1 97 60-171 27-129 (206)
38 1fy2_A Aspartyl dipeptidase; s 98.6 7.2E-08 2.4E-12 83.2 7.2 95 59-171 30-129 (229)
39 1oi4_A Hypothetical protein YH 98.1 2.3E-05 7.8E-10 65.2 10.1 97 59-171 22-134 (193)
40 3l18_A Intracellular protease 97.5 0.00033 1.1E-08 56.4 8.0 95 61-171 3-111 (168)
41 2rk3_A Protein DJ-1; parkinson 97.4 0.00027 9.2E-09 58.6 7.0 97 59-171 2-115 (197)
42 4hcj_A THIJ/PFPI domain protei 97.4 0.00026 8.9E-09 58.5 6.3 97 59-171 7-117 (177)
43 2vrn_A Protease I, DR1199; cys 97.4 0.00063 2.2E-08 55.8 8.5 97 59-171 8-124 (190)
44 1vhq_A Enhancing lycopene bios 97.3 0.00087 3E-08 57.1 8.3 53 118-175 89-154 (232)
45 4e08_A DJ-1 beta; flavodoxin-l 97.2 0.00096 3.3E-08 54.9 7.4 98 58-171 3-116 (190)
46 3efe_A THIJ/PFPI family protei 97.1 0.0022 7.4E-08 53.9 9.5 96 60-171 5-121 (212)
47 2ab0_A YAJL; DJ-1/THIJ superfa 97.1 0.00069 2.4E-08 56.6 5.8 95 61-171 3-116 (205)
48 3f5d_A Protein YDEA; unknow pr 96.9 0.0025 8.6E-08 53.5 8.1 95 60-171 3-109 (206)
49 2fex_A Conserved hypothetical 96.9 0.001 3.4E-08 54.7 5.3 94 62-171 3-110 (188)
50 3ttv_A Catalase HPII; heme ori 96.9 0.0028 9.5E-08 63.0 9.0 97 58-171 598-708 (753)
51 3l3b_A ES1 family protein; ssg 96.9 0.0045 1.5E-07 53.5 9.4 50 118-172 106-168 (242)
52 3ej6_A Catalase-3; heme, hydro 96.9 0.0061 2.1E-07 60.0 11.3 97 60-171 537-646 (688)
53 3uk7_A Class I glutamine amido 96.6 0.0049 1.7E-07 56.4 7.9 96 58-171 203-330 (396)
54 3cne_A Putative protease I; st 96.5 0.0022 7.6E-08 51.8 4.4 49 118-171 65-120 (175)
55 3uk7_A Class I glutamine amido 96.4 0.0077 2.6E-07 55.1 7.8 95 59-171 11-137 (396)
56 2iuf_A Catalase; oxidoreductas 96.4 0.0092 3.1E-07 58.9 8.7 99 59-171 528-648 (688)
57 3ot1_A 4-methyl-5(B-hydroxyeth 96.3 0.0061 2.1E-07 50.9 5.9 97 59-171 8-121 (208)
58 3gra_A Transcriptional regulat 96.0 0.0088 3E-07 49.8 5.6 49 117-171 69-117 (202)
59 3kkl_A Probable chaperone prot 96.0 0.022 7.5E-07 49.1 8.1 49 118-171 97-147 (244)
60 3fse_A Two-domain protein cont 95.9 0.017 5.9E-07 52.9 7.6 97 59-171 9-121 (365)
61 1n57_A Chaperone HSP31, protei 95.9 0.032 1.1E-06 49.2 9.0 50 117-171 143-194 (291)
62 3er6_A Putative transcriptiona 95.9 0.015 5E-07 48.7 6.3 50 117-171 72-124 (209)
63 3noq_A THIJ/PFPI family protei 95.8 0.011 3.9E-07 50.3 5.6 96 59-171 4-113 (231)
64 3en0_A Cyanophycinase; serine 95.8 0.014 4.9E-07 51.8 6.4 97 60-170 56-160 (291)
65 1sy7_A Catalase 1; heme oxidat 95.7 0.027 9.4E-07 55.8 8.7 98 59-172 533-645 (715)
66 3ewn_A THIJ/PFPI family protei 95.6 0.027 9.1E-07 48.8 7.2 97 59-171 22-133 (253)
67 3mgk_A Intracellular protease/ 95.5 0.013 4.5E-07 49.1 4.7 95 61-171 5-113 (211)
68 1u9c_A APC35852; structural ge 95.3 0.0092 3.1E-07 50.1 3.1 77 90-171 34-138 (224)
69 1rw7_A YDR533CP; alpha-beta sa 94.7 0.013 4.5E-07 50.1 2.4 49 118-171 97-147 (243)
70 3n7t_A Macrophage binding prot 94.5 0.02 7E-07 49.5 3.3 49 118-171 104-154 (247)
71 4gdh_A DJ-1, uncharacterized p 92.3 0.14 4.8E-06 42.1 4.7 73 90-168 23-120 (194)
72 3bhn_A THIJ/PFPI domain protei 89.0 0.2 6.8E-06 42.8 2.7 49 117-171 78-128 (236)
73 3h75_A Periplasmic sugar-bindi 87.6 2.1 7.4E-05 37.1 8.6 86 59-163 2-94 (350)
74 3pzy_A MOG; ssgcid, seattle st 87.1 0.27 9.1E-06 39.7 2.1 72 55-132 2-79 (164)
75 2an1_A Putative kinase; struct 84.8 0.88 3E-05 39.5 4.5 82 61-165 6-97 (292)
76 1di6_A MOGA, molybdenum cofact 82.6 1.1 3.7E-05 37.2 3.9 69 59-132 2-79 (195)
77 3l6u_A ABC-type sugar transpor 82.2 7.1 0.00024 32.4 9.1 86 58-162 6-96 (293)
78 3uug_A Multiple sugar-binding 82.1 8.7 0.0003 32.6 9.8 84 59-161 2-90 (330)
79 3l49_A ABC sugar (ribose) tran 81.8 8.1 0.00028 32.0 9.3 84 59-161 4-92 (291)
80 3m9w_A D-xylose-binding peripl 81.7 10 0.00035 32.0 10.0 83 60-161 2-89 (313)
81 1u0t_A Inorganic polyphosphate 81.4 2.2 7.6E-05 37.4 5.7 82 62-164 6-108 (307)
82 3tb6_A Arabinose metabolism tr 81.4 8.4 0.00029 31.9 9.3 87 60-162 15-106 (298)
83 3kbq_A Protein TA0487; structu 81.0 1.1 3.8E-05 36.5 3.4 101 60-174 3-108 (172)
84 1y5e_A Molybdenum cofactor bio 80.1 3.4 0.00011 33.1 6.0 69 57-132 10-85 (169)
85 3rfq_A Pterin-4-alpha-carbinol 80.1 1.3 4.6E-05 36.4 3.6 70 57-132 27-102 (185)
86 3pfn_A NAD kinase; structural 79.9 1 3.5E-05 41.1 3.1 83 62-165 40-142 (365)
87 3ksm_A ABC-type sugar transpor 79.5 9.9 0.00034 31.1 9.0 82 61-161 1-90 (276)
88 1mkz_A Molybdenum cofactor bio 79.2 7.5 0.00026 31.1 7.8 67 58-131 8-81 (172)
89 1z0s_A Probable inorganic poly 79.1 2.9 0.0001 36.6 5.6 70 62-164 31-100 (278)
90 3jy6_A Transcriptional regulat 79.1 10 0.00035 31.3 9.0 83 58-162 5-92 (276)
91 3cs3_A Sugar-binding transcrip 78.8 8.3 0.00028 31.9 8.3 81 59-162 7-87 (277)
92 3rot_A ABC sugar transporter, 78.7 9.7 0.00033 31.9 8.8 83 60-161 3-92 (297)
93 2fn9_A Ribose ABC transporter, 77.9 11 0.00037 31.3 8.8 63 59-129 1-68 (290)
94 3k4h_A Putative transcriptiona 76.7 15 0.00051 30.4 9.3 88 58-161 6-98 (292)
95 3hly_A Flavodoxin-like domain; 76.6 16 0.00056 28.3 9.0 79 81-162 12-91 (161)
96 1sqs_A Conserved hypothetical 76.1 6.2 0.00021 32.9 6.7 77 61-146 3-105 (242)
97 3o74_A Fructose transport syst 75.7 15 0.0005 30.0 8.9 61 61-129 3-68 (272)
98 2a5l_A Trp repressor binding p 75.0 6.1 0.00021 31.4 6.2 46 81-126 17-78 (200)
99 2vzf_A NADH-dependent FMN redu 74.8 3 0.0001 33.7 4.2 92 61-163 4-110 (197)
100 1g8l_A Molybdopterin biosynthe 74.5 4.5 0.00015 37.3 5.8 75 58-132 175-256 (411)
101 4e5v_A Putative THUA-like prot 74.3 42 0.0014 28.9 12.6 72 86-165 21-96 (281)
102 2pjk_A 178AA long hypothetical 73.5 6.9 0.00024 31.6 6.1 71 57-132 12-94 (178)
103 3fni_A Putative diflavin flavo 73.4 30 0.001 26.8 10.1 78 81-161 16-95 (159)
104 2dri_A D-ribose-binding protei 72.0 17 0.00059 29.9 8.5 83 60-161 1-88 (271)
105 3gv0_A Transcriptional regulat 72.0 15 0.00051 30.6 8.2 66 58-129 6-76 (288)
106 3g1w_A Sugar ABC transporter; 71.9 15 0.00052 30.6 8.3 84 60-162 4-93 (305)
107 3kke_A LACI family transcripti 71.6 23 0.00079 29.7 9.4 83 59-162 14-101 (303)
108 3iwt_A 178AA long hypothetical 71.3 3.7 0.00013 32.8 4.0 69 58-131 13-93 (178)
109 8abp_A L-arabinose-binding pro 70.8 18 0.0006 30.2 8.4 82 60-161 2-88 (306)
110 3egc_A Putative ribose operon 70.5 15 0.00053 30.4 7.9 64 58-129 6-74 (291)
111 3kjx_A Transcriptional regulat 70.5 24 0.00081 30.2 9.4 83 58-161 66-153 (344)
112 3h5o_A Transcriptional regulat 70.0 29 0.001 29.6 9.8 64 59-130 61-129 (339)
113 2fep_A Catabolite control prot 69.6 24 0.00081 29.4 8.9 64 58-129 14-82 (289)
114 2r47_A Uncharacterized protein 68.9 1.3 4.5E-05 35.6 0.7 46 118-170 83-130 (157)
115 2g2c_A Putative molybdenum cof 68.7 1.7 5.9E-05 34.7 1.4 69 58-131 3-81 (167)
116 4fe7_A Xylose operon regulator 67.6 11 0.00038 33.6 6.7 82 57-162 22-104 (412)
117 3dbi_A Sugar-binding transcrip 67.4 35 0.0012 29.0 9.8 66 58-129 59-129 (338)
118 2fts_A Gephyrin; gephyrin, neu 67.4 4.3 0.00015 37.4 4.0 70 58-132 179-260 (419)
119 2pbq_A Molybdenum cofactor bio 67.3 3 0.0001 33.8 2.6 68 59-131 4-80 (178)
120 2rjo_A Twin-arginine transloca 67.2 24 0.00082 30.0 8.7 85 59-162 4-95 (332)
121 2rgy_A Transcriptional regulat 66.8 24 0.00083 29.2 8.4 83 59-162 7-97 (290)
122 2amj_A Modulator of drug activ 66.8 11 0.00039 30.6 6.1 64 59-126 12-77 (204)
123 3brq_A HTH-type transcriptiona 66.7 28 0.00095 28.6 8.7 63 59-129 18-87 (296)
124 3e3m_A Transcriptional regulat 66.7 21 0.00071 30.8 8.2 82 59-161 69-155 (355)
125 2ioy_A Periplasmic sugar-bindi 66.4 28 0.00097 28.7 8.8 82 61-161 2-88 (283)
126 3e61_A Putative transcriptiona 66.3 14 0.00047 30.4 6.7 81 59-162 7-93 (277)
127 3rpe_A MDAB, modulator of drug 65.6 13 0.00045 31.0 6.4 88 58-150 24-113 (218)
128 3d8u_A PURR transcriptional re 65.1 16 0.00055 29.9 6.8 82 60-162 3-89 (275)
129 2vk2_A YTFQ, ABC transporter p 65.0 35 0.0012 28.5 9.1 61 61-129 3-68 (306)
130 1jlj_A Gephyrin; globular alph 65.0 4 0.00014 33.4 2.9 70 57-131 11-90 (189)
131 3c3k_A Alanine racemase; struc 64.9 34 0.0011 28.3 8.9 62 59-128 7-73 (285)
132 2x7x_A Sensor protein; transfe 64.9 26 0.00089 29.7 8.4 83 59-161 5-93 (325)
133 2fvy_A D-galactose-binding per 64.7 30 0.001 28.6 8.6 84 61-163 3-92 (309)
134 3bbl_A Regulatory protein of L 63.9 38 0.0013 27.9 9.1 65 60-129 4-74 (287)
135 2ioj_A Hypothetical protein AF 63.7 20 0.00069 27.2 6.7 72 88-172 42-115 (139)
136 3huu_A Transcription regulator 63.4 22 0.00075 29.8 7.5 88 58-161 20-112 (305)
137 2r4q_A Phosphotransferase syst 63.3 27 0.00094 25.9 7.0 59 60-131 3-69 (106)
138 2o20_A Catabolite control prot 62.7 40 0.0014 28.6 9.2 63 59-129 62-129 (332)
139 3hcw_A Maltose operon transcri 62.7 19 0.00065 30.1 7.0 70 58-130 5-79 (295)
140 1uz5_A MOEA protein, 402AA lon 62.2 16 0.00053 33.5 6.7 69 58-131 178-258 (402)
141 2is8_A Molybdopterin biosynthe 62.1 3.1 0.00011 33.1 1.7 42 91-132 27-75 (164)
142 2r48_A Phosphotransferase syst 61.8 36 0.0012 25.3 7.5 59 60-131 3-69 (106)
143 1tjy_A Sugar transport protein 60.7 39 0.0013 28.6 8.7 84 60-162 3-92 (316)
144 2iks_A DNA-binding transcripti 60.2 33 0.0011 28.4 8.0 63 59-129 19-86 (293)
145 4dik_A Flavoprotein; TM0755, e 59.5 38 0.0013 30.8 8.8 79 81-160 277-359 (410)
146 3o1i_D Periplasmic protein TOR 59.5 31 0.001 28.5 7.7 83 59-161 4-93 (304)
147 2h3h_A Sugar ABC transporter, 59.3 42 0.0014 28.1 8.6 83 60-162 1-89 (313)
148 3ff4_A Uncharacterized protein 59.0 9.4 0.00032 28.9 3.9 23 140-167 95-117 (122)
149 3afo_A NADH kinase POS5; alpha 58.4 2.4 8.2E-05 38.9 0.5 33 62-103 43-77 (388)
150 1gud_A ALBP, D-allose-binding 57.8 49 0.0017 27.3 8.7 82 61-161 2-90 (288)
151 2q62_A ARSH; alpha/beta, flavo 57.7 23 0.0008 29.9 6.6 95 60-163 35-144 (247)
152 2zki_A 199AA long hypothetical 57.4 16 0.00056 28.8 5.4 44 82-126 16-77 (199)
153 1jx6_A LUXP protein; protein-l 57.0 68 0.0023 27.1 9.7 62 58-127 41-112 (342)
154 2qv7_A Diacylglycerol kinase D 57.0 35 0.0012 29.8 7.9 89 60-165 24-116 (337)
155 3miz_A Putative transcriptiona 56.3 31 0.0011 28.7 7.2 64 58-128 11-79 (301)
156 3brs_A Periplasmic binding pro 55.7 28 0.00094 28.6 6.7 64 60-129 5-75 (289)
157 2hsg_A Glucose-resistance amyl 55.7 32 0.0011 29.2 7.3 63 59-129 59-126 (332)
158 2i2c_A Probable inorganic poly 55.5 9 0.00031 32.8 3.6 54 86-165 16-71 (272)
159 1wu2_A MOEA protein, molybdopt 55.4 8.5 0.00029 35.2 3.6 42 90-131 216-262 (396)
160 2ark_A Flavodoxin; FMN, struct 55.4 15 0.00051 29.1 4.8 63 81-147 16-79 (188)
161 3clk_A Transcription regulator 55.1 23 0.00079 29.3 6.2 63 59-129 7-75 (290)
162 3bil_A Probable LACI-family tr 54.8 33 0.0011 29.5 7.3 62 60-129 66-132 (348)
163 3qk7_A Transcriptional regulat 54.3 59 0.002 26.9 8.7 87 59-162 5-95 (294)
164 2fz5_A Flavodoxin; alpha/beta 53.9 39 0.0013 24.6 6.7 42 81-126 11-53 (137)
165 1dbq_A Purine repressor; trans 53.7 54 0.0018 26.8 8.2 63 59-129 6-73 (289)
166 3d02_A Putative LACI-type tran 53.5 67 0.0023 26.4 8.9 84 60-162 4-93 (303)
167 1t0b_A THUA-like protein; treh 53.5 33 0.0011 29.1 6.9 114 87-211 34-150 (252)
168 1rtt_A Conserved hypothetical 52.6 14 0.00047 29.4 4.1 77 61-147 8-99 (193)
169 1uuy_A CNX1, molybdopterin bio 52.2 6.8 0.00023 31.1 2.2 68 59-131 4-83 (167)
170 1ydg_A Trp repressor binding p 48.6 29 0.00098 27.8 5.5 46 81-126 18-85 (211)
171 3f2v_A General stress protein 48.6 29 0.001 28.1 5.6 57 60-126 2-65 (192)
172 3r6w_A FMN-dependent NADH-azor 48.4 50 0.0017 26.5 7.0 40 60-106 2-43 (212)
173 1qpz_A PURA, protein (purine n 48.1 90 0.0031 26.4 9.0 63 59-129 57-124 (340)
174 3lkv_A Uncharacterized conserv 48.1 93 0.0032 26.2 9.0 68 86-162 157-227 (302)
175 2kyr_A Fructose-like phosphotr 46.7 35 0.0012 25.5 5.3 61 58-131 4-72 (111)
176 2fzv_A Putative arsenical resi 45.5 47 0.0016 28.7 6.7 78 60-146 59-149 (279)
177 1eiw_A Hypothetical protein MT 45.3 13 0.00046 27.8 2.7 58 87-162 17-74 (111)
178 3dzv_A 4-methyl-5-(beta-hydrox 45.1 1.5E+02 0.005 25.4 9.8 79 57-159 14-92 (273)
179 2qh8_A Uncharacterized protein 44.9 1E+02 0.0035 25.6 8.7 66 87-161 158-226 (302)
180 2q9u_A A-type flavoprotein; fl 44.9 68 0.0023 28.3 7.9 66 81-147 268-334 (414)
181 3g85_A Transcriptional regulat 44.6 26 0.00087 28.9 4.7 64 58-128 9-77 (289)
182 3hs3_A Ribose operon repressor 44.4 54 0.0019 26.9 6.8 62 58-127 8-75 (277)
183 3k9c_A Transcriptional regulat 44.4 39 0.0013 28.0 5.9 64 58-130 10-77 (289)
184 2gk3_A Putative cytoplasmic pr 44.3 38 0.0013 28.5 5.8 67 89-161 44-124 (256)
185 3fvw_A Putative NAD(P)H-depend 43.6 39 0.0013 27.0 5.5 79 59-147 2-94 (192)
186 2ohh_A Type A flavoprotein FPR 43.6 53 0.0018 28.8 6.9 82 81-163 268-351 (404)
187 3gbv_A Putative LACI-family tr 43.1 54 0.0018 26.9 6.6 87 58-162 6-101 (304)
188 1t5b_A Acyl carrier protein ph 41.8 60 0.002 25.3 6.4 40 61-107 3-44 (201)
189 3k1y_A Oxidoreductase; structu 41.5 38 0.0013 27.3 5.2 97 57-164 9-127 (191)
190 1byk_A Protein (trehalose oper 41.4 64 0.0022 25.9 6.6 62 60-129 2-68 (255)
191 2bon_A Lipid kinase; DAG kinas 40.2 64 0.0022 28.0 6.8 95 61-173 30-129 (332)
192 3tem_A Ribosyldihydronicotinam 39.6 60 0.002 26.8 6.2 39 61-107 3-41 (228)
193 4a3s_A 6-phosphofructokinase; 38.2 32 0.0011 30.4 4.5 42 122-170 5-46 (319)
194 3mw8_A Uroporphyrinogen-III sy 37.9 49 0.0017 27.0 5.4 42 89-130 15-61 (240)
195 2hpv_A FMN-dependent NADH-azor 37.5 69 0.0023 25.3 6.1 41 61-107 3-45 (208)
196 2yxb_A Coenzyme B12-dependent 37.4 1.3E+02 0.0044 23.3 7.6 78 59-150 17-97 (161)
197 1ehs_A STB, heat-stable entero 37.1 8.1 0.00028 23.8 0.2 15 158-172 32-46 (48)
198 1d4a_A DT-diaphorase, quinone 35.7 1E+02 0.0035 26.0 7.2 40 60-107 3-42 (273)
199 1v8a_A Hydroxyethylthiazole ki 35.5 1.8E+02 0.0061 24.4 8.7 77 59-159 14-90 (265)
200 5nul_A Flavodoxin; electron tr 32.7 78 0.0027 23.1 5.4 42 81-126 10-52 (138)
201 1jye_A Lactose operon represso 32.5 2.1E+02 0.0073 24.2 8.9 62 59-128 60-127 (349)
202 1t0i_A YLR011WP; FMN binding p 32.1 43 0.0015 26.2 4.0 92 62-165 3-126 (191)
203 4gi5_A Quinone reductase; prot 31.8 97 0.0033 26.7 6.5 38 62-107 25-62 (280)
204 1pfk_A Phosphofructokinase; tr 31.8 54 0.0018 29.0 4.9 41 122-169 6-46 (320)
205 3lft_A Uncharacterized protein 31.7 84 0.0029 26.0 6.0 40 87-126 151-193 (295)
206 2hna_A Protein MIOC, flavodoxi 31.3 1.3E+02 0.0044 22.3 6.5 40 81-125 13-52 (147)
207 3s40_A Diacylglycerol kinase; 29.7 1.6E+02 0.0055 25.1 7.6 95 62-173 10-108 (304)
208 1zxx_A 6-phosphofructokinase; 29.7 55 0.0019 28.9 4.5 42 122-170 5-46 (319)
209 1e5d_A Rubredoxin\:oxygen oxid 29.1 2.5E+02 0.0085 24.3 8.9 47 81-127 264-311 (402)
210 1ccw_A Protein (glutamate muta 28.4 1.9E+02 0.0064 21.6 7.1 63 92-159 25-89 (137)
211 3ezx_A MMCP 1, monomethylamine 28.4 2.4E+02 0.0082 22.9 8.4 81 58-150 90-173 (215)
212 3b6i_A Flavoprotein WRBA; flav 28.3 1.2E+02 0.0042 23.3 6.2 45 81-126 13-75 (198)
213 3f6r_A Flavodoxin; FMN binding 27.8 1.3E+02 0.0046 22.1 6.0 42 81-126 13-56 (148)
214 1uc8_A LYSX, lysine biosynthes 27.8 2.1E+02 0.0073 23.0 7.8 52 63-127 2-56 (280)
215 2bwn_A 5-aminolevulinate synth 27.7 1.4E+02 0.0048 25.6 6.9 60 89-150 144-208 (401)
216 4b4k_A N5-carboxyaminoimidazol 27.6 81 0.0028 25.7 4.8 60 57-127 19-84 (181)
217 3p0r_A Azoreductase; structura 26.7 1.2E+02 0.0042 24.3 6.0 43 58-106 3-47 (211)
218 3jvd_A Transcriptional regulat 26.7 1.3E+02 0.0046 25.3 6.5 61 59-128 63-128 (333)
219 2h0a_A TTHA0807, transcription 26.0 29 0.001 28.2 2.0 44 86-129 17-65 (276)
220 3dzz_A Putative pyridoxal 5'-p 25.0 1.7E+02 0.006 24.7 7.0 62 89-150 121-193 (391)
221 1y81_A Conserved hypothetical 24.8 97 0.0033 23.4 4.7 18 88-105 31-48 (138)
222 2qip_A Protein of unknown func 24.6 2.4E+02 0.0082 21.6 7.1 64 88-163 64-141 (165)
223 3lcm_A SMU.1420, putative oxid 24.6 1.2E+02 0.0041 24.0 5.5 76 62-147 3-100 (196)
224 2qh8_A Uncharacterized protein 24.4 1.6E+02 0.0055 24.4 6.5 61 59-128 7-78 (302)
225 2m1z_A LMO0427 protein; homolo 24.2 1.6E+02 0.0056 21.6 5.6 59 60-131 3-69 (106)
226 4id9_A Short-chain dehydrogena 24.0 2.1E+02 0.0073 23.9 7.3 47 84-130 29-88 (347)
227 1jr2_A Uroporphyrinogen-III sy 23.6 75 0.0026 26.8 4.2 42 89-130 39-87 (286)
228 2e7j_A SEP-tRNA:Cys-tRNA synth 23.4 1.6E+02 0.0055 24.7 6.4 60 90-150 106-177 (371)
229 3st7_A Capsular polysaccharide 23.3 1.1E+02 0.0037 26.3 5.3 47 83-129 9-56 (369)
230 2qu7_A Putative transcriptiona 23.1 1.1E+02 0.0039 24.8 5.2 62 59-129 7-73 (288)
231 2hqb_A Transcriptional activat 22.9 2.9E+02 0.0099 22.9 7.9 63 60-128 5-72 (296)
232 1ycg_A Nitric oxide reductase; 22.7 1.9E+02 0.0065 25.0 6.8 46 81-126 263-309 (398)
233 2h4a_A YRAM (HI1655); perplasm 22.5 74 0.0025 27.6 4.0 68 85-163 137-209 (325)
234 3iwp_A Copper homeostasis prot 22.5 2.5E+02 0.0087 24.3 7.4 12 119-130 179-190 (287)
235 2l69_A Rossmann 2X3 fold prote 22.5 83 0.0028 23.1 3.6 29 87-115 64-92 (134)
236 3rht_A (gatase1)-like protein; 22.4 1.6E+02 0.0053 25.1 6.0 39 88-127 20-58 (259)
237 2dr1_A PH1308 protein, 386AA l 21.9 2.2E+02 0.0076 23.9 7.0 60 90-150 110-176 (386)
238 3eag_A UDP-N-acetylmuramate:L- 21.9 3.5E+02 0.012 23.0 8.4 12 119-130 66-77 (326)
239 3u7r_A NADPH-dependent FMN red 21.5 1.4E+02 0.0047 23.9 5.2 50 113-163 61-112 (190)
240 3s2y_A Chromate reductase; ura 27.0 20 0.00068 29.1 0.0 14 113-126 67-80 (199)
241 4hs4_A Chromate reductase; tri 20.9 88 0.003 25.1 3.9 51 112-163 66-117 (199)
242 4dq6_A Putative pyridoxal phos 20.5 2.2E+02 0.0077 23.9 6.8 61 90-150 127-197 (391)
243 3f9t_A TDC, L-tyrosine decarbo 20.4 2.4E+02 0.0081 23.6 6.9 60 90-150 136-201 (397)
No 1
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=99.96 E-value=4e-29 Score=226.93 Aligned_cols=202 Identities=30% Similarity=0.451 Sum_probs=138.0
Q ss_pred ccccccccCCCCCCCCCCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCC
Q 025574 42 SLSVLVPRCPVPDSKLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVN 121 (250)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~d 121 (250)
|-++.--||-.+.+..+.||+|||++....... ......+|+.++|+++|+++|+++++++++.+.+.+...++.+|
T Consensus 12 ~~~~~~~~~m~~~~~~~~~P~IGI~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~d 88 (315)
T 1l9x_A 12 SGLVPRGSHMRPHGDTAKKPIIGILMQKCRNKV---MKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSIN 88 (315)
T ss_dssp ----------------CCCCEEEEECEECCSHH---HHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSS
T ss_pred cCcccCccccCCCcccCCCCEEEEECCcccccc---cccCcceehHHHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCC
Confidence 455566678888888899999999998653210 01124678899999999999999999998776777777678899
Q ss_pred EEEECCCC-CCCccchH-HHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCC
Q 025574 122 GVLYTGGW-AKDGLYYA-IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSI 199 (250)
Q Consensus 122 gvIlpGG~-~~~~~~~~-~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~ 199 (250)
|||||||+ +.++..+. ....+++.+++..++|+.+||||||+|||+|+.++||++ .+..+..++...|++......
T Consensus 89 glil~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~-~~~~~~~~g~~~p~~~~~~~~- 166 (315)
T 1l9x_A 89 GILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGEC-LLTATDTVDVAMPLNFTGGQL- 166 (315)
T ss_dssp EEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSC-CCEEEEEEEEEECCEECSTTT-
T ss_pred EEEEeCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCcc-ccccccccCCCCCeeeccCCC-
Confidence 99999997 55555343 334677777776434444999999999999999999983 233333333345665543323
Q ss_pred CCcccccCChhhhhhcCCccceeeeeccccc--------c----ceEEEEeecCCCeEEEee
Q 025574 200 EGTVFQRFPPKLIKKLSTDCLVMQNHHVRPC--------T----INLLSTSVARFNCLKILK 249 (250)
Q Consensus 200 ~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~--------~----f~vlA~s~D~~g~~Fvs~ 249 (250)
.++||+.+|+.+...++++..++++|+|+|. . ++++|++.| +..+++++
T Consensus 167 ~s~L~~~~~~~~~~~l~~~~~~~~~H~~~V~~~~~~~~~~l~~g~~v~A~s~d-g~ve~i~~ 227 (315)
T 1l9x_A 167 HSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTD-GKIEFIST 227 (315)
T ss_dssp TCSTTTTSCHHHHHHHHHSCCEEEEEEEECBHHHHHTCHHHHHHEEEEEEEES-SSCEEEEE
T ss_pred CChHHHhcChhhhhhccccceEEEhhhhhcCccccccccccCCCCEEEEEcCC-CCEEEEEE
Confidence 6889999999887767667778889999997 3 899999965 56788764
No 2
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=99.92 E-value=5e-25 Score=193.97 Aligned_cols=163 Identities=20% Similarity=0.316 Sum_probs=109.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHH
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI 138 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~ 138 (250)
+||+|||++.......+. .++...+|+..+|+++|+++|+.++++++..+.+ +.+.++.+||||||||++++|..|+.
T Consensus 3 ~~p~IGi~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~aG~~pv~lp~~~~~~-~~~~l~~~DGlil~GG~~v~P~~yg~ 80 (254)
T 3fij_A 3 LKPVIGITGNRLVKGVDV-FYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPST-AVQAISLVDGLLLTGGQDITPQLYLE 80 (254)
T ss_dssp CCCEEEEEC-------------------CHHHHHHHHHHTCEEEEECCCCGGG-HHHHHHTCSEEEECCCSCCCGGGGTC
T ss_pred CCCEEEEeCCcccccccc-cCCcchhhhhHHHHHHHHHCCCEEEEEeCCCchH-HHHHHhhCCEEEECCCCCCChhhcCC
Confidence 789999999864332211 2345678999999999999999999999876655 77778899999999999866544321
Q ss_pred ----------------HHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCccc-ccccc-----------cCCCceee
Q 025574 139 ----------------VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKN-ILESF-----------NAADQAST 190 (250)
Q Consensus 139 ----------------~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~-~l~~~-----------~~~~~~~p 190 (250)
...+++++++.+ +||||||+|||+|+.++||+.. .+... ..+.++.+
T Consensus 81 ~~~~~~~~~~~~rd~~~~~lir~a~~~~-----~PiLGIC~G~Qll~~a~Gg~v~~~~~~~~~~~~~h~~~~~~~~g~~~ 155 (254)
T 3fij_A 81 EPSQEIGAYFPPRDSYEIALVRAALDAG-----KPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHT 155 (254)
T ss_dssp CCCTTCCCCCHHHHHHHHHHHHHHHHTT-----CCEEEETHHHHHHHHHTTCCEESSGGGSSSCCCCCBCCSCTTSCCEE
T ss_pred ccCcccCCcChhhhHHHHHHHHHHHHcC-----CCEEEECHHHHHHHHHhCCceecccccccCccccccCCCCCccceEE
Confidence 237888998888 9999999999999999999831 11111 01123444
Q ss_pred eeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc----ceEEEEeec
Q 025574 191 LQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT----INLLSTSVA 240 (250)
Q Consensus 191 i~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~----f~vlA~s~D 240 (250)
+.+++ ++.||+.++.. ..+.++|++.|.. ++++|++.|
T Consensus 156 v~~~~----~s~l~~~~~~~--------~~v~~~H~~~v~~l~~g~~v~a~s~d 197 (254)
T 3fij_A 156 IDIEP----TSELAKHHPNK--------KLVNSLHHQFIKKLAPSFKVTARTAD 197 (254)
T ss_dssp EEECT----TSSGGGTCCTT--------EEECCBCSCEESSCCSSEEEEEEETT
T ss_pred EEeCC----CChHHHhcCCc--------EEEEEeccchhhccCCCcEEEEEeCC
Confidence 54432 56788777642 3467799999874 899999954
No 3
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=99.79 E-value=7.8e-20 Score=157.56 Aligned_cols=143 Identities=12% Similarity=0.143 Sum_probs=95.9
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHH
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI 138 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~ 138 (250)
+.+.|+|+.... +|. .+++++|+++|+++++++++.+.+++.. .++||||||||++. .+...
T Consensus 23 ~~~~I~iiD~g~-------------~~~-~~i~~~l~~~G~~~~vv~~~~~~~~l~~--~~~dglil~Gg~~~--~~~~~ 84 (218)
T 2vpi_A 23 MEGAVVILDAGA-------------QYG-KVIDRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPNS--VYAED 84 (218)
T ss_dssp CTTCEEEEECST-------------TTT-HHHHHHHHHTTCCEEEECTTCCHHHHHH--HTCSEEEEEC-----------
T ss_pred cCCeEEEEECCC-------------chH-HHHHHHHHHCCCEEEEEECCCChHHHhh--cCCCEEEECCCCcc--ccccc
Confidence 347889986432 233 4678899999999999998876665543 46999999999862 12111
Q ss_pred HHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCc
Q 025574 139 VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTD 218 (250)
Q Consensus 139 ~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~ 218 (250)
...+.+.+++.+ +|+||||+|||+|+.++||+..... ..+.+..++.+++ .++||+++++.
T Consensus 85 ~~~~~~~~~~~~-----~PilGIC~G~Qll~~~~GG~v~~~~--~~~~G~~~v~~~~----~~~l~~~l~~~-------- 145 (218)
T 2vpi_A 85 APWFDPAIFTIG-----KPVLGICYGMQMMNKVFGGTVHKKS--VREDGVFNISVDN----TCSLFRGLQKE-------- 145 (218)
T ss_dssp CCCCCGGGGTSS-----CCEEEETHHHHHHHHHTTCCEEEEE--ECSCEEEEEEECT----TSGGGTTCCSE--------
T ss_pred chhHHHHHHHcC-----CCEEEEcHHHHHHHHHhCCceEeCC--CCcccEEEEEEcc----CChhHhcCCCC--------
Confidence 111223334455 9999999999999999999843221 1344555665532 57899888643
Q ss_pred cceeeeecccccc----ceEEEEe
Q 025574 219 CLVMQNHHVRPCT----INLLSTS 238 (250)
Q Consensus 219 ~~v~~~Hs~~V~~----f~vlA~s 238 (250)
..++++|+|+|.. ++++|++
T Consensus 146 ~~v~~~H~~~v~~l~~~~~vlA~s 169 (218)
T 2vpi_A 146 EVVLLTHGDSVDKVADGFKVVARS 169 (218)
T ss_dssp EEEEECSEEEESSCCTTCEEEEEE
T ss_pred cEEeehhhhHhhhcCCCCEEEEEc
Confidence 3588999999964 8999998
No 4
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=99.77 E-value=3.4e-19 Score=152.73 Aligned_cols=132 Identities=15% Similarity=0.235 Sum_probs=91.9
Q ss_pred chhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCC-CCCCccchH-HHHHHHHHHHHhCCCCCCceEEc
Q 025574 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGG-WAKDGLYYA-IVEKVFKKILEKNDAGDHFPLYA 160 (250)
Q Consensus 83 ~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG-~~~~~~~~~-~~~~li~~~~~~~~~g~~~PILG 160 (250)
.+|. .+|+++|+++|+++++++++.+.++ ++++|||||||| +.. .+.. ....+.+.+++.+ +|+||
T Consensus 23 ~~~~-~~~~~~l~~~G~~~~vv~~~~~~~~----l~~~DglIl~GG~p~~--~~~~~~~~~l~~~~~~~~-----~PiLG 90 (212)
T 2a9v_A 23 GQWT-HREWRVLRELGVDTKIVPNDIDSSE----LDGLDGLVLSGGAPNI--DEELDKLGSVGKYIDDHN-----YPILG 90 (212)
T ss_dssp CCTT-CHHHHHHHHTTCBCCEEETTSCGGG----GTTCSEEEEEEECSCG--GGTGGGHHHHHHHHHHCC-----SCEEE
T ss_pred CccH-HHHHHHHHHCCCEEEEEeCCCCHHH----HhCCCEEEECCCCCCC--CcccccchhHHHHHHhCC-----CCEEE
Confidence 4453 4688999999999999987654443 556999999999 541 1111 1234556666767 99999
Q ss_pred ccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc----ceEEE
Q 025574 161 HCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT----INLLS 236 (250)
Q Consensus 161 IClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~----f~vlA 236 (250)
||+|||+|+.++||+..... ..+.+..++.+++ +++||+++++. ..+|++|++.+.. ++++|
T Consensus 91 IC~G~Qll~~~lGg~v~~~~--~~~~G~~~v~~~~----~~~l~~~~~~~--------~~v~~~H~~~v~~l~~~~~vlA 156 (212)
T 2a9v_A 91 ICVGAQFIALHFGASVVKAK--HPEFGKTKVSVMH----SENIFGGLPSE--------ITVWENHNDEIINLPDDFTLAA 156 (212)
T ss_dssp ETHHHHHHHHHTTCEEEEEE--EEEEEEEEEEESC----CCGGGTTCCSE--------EEEEEEEEEEEESCCTTEEEEE
T ss_pred EChHHHHHHHHhCCEEEcCC--CcccCceeeEECC----CChhHhcCCCc--------eEEEeEhhhhHhhCCCCcEEEE
Confidence 99999999999999843211 1223344454432 56788877643 3589999999853 89999
Q ss_pred Eeec
Q 025574 237 TSVA 240 (250)
Q Consensus 237 ~s~D 240 (250)
++.|
T Consensus 157 ~s~d 160 (212)
T 2a9v_A 157 SSAT 160 (212)
T ss_dssp ECSS
T ss_pred EeCC
Confidence 9854
No 5
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=99.76 E-value=8.4e-19 Score=149.11 Aligned_cols=140 Identities=14% Similarity=0.139 Sum_probs=90.1
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHH-HHHHHHHHHhCCCCCCceEEcccchhH
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIV-EKVFKKILEKNDAGDHFPLYAHCLGFE 166 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~-~~li~~~~~~~~~g~~~PILGIClG~Q 166 (250)
.|+.++|+++|++++++. ++++ ++.+||||||||++....+.... ..+++.+.+.+ +||||||+|||
T Consensus 16 ~si~~al~~~G~~~~v~~---~~~~----l~~~D~lilPG~g~~~~~~~~~~~~~~i~~~~~~~-----~PvlGIClG~Q 83 (211)
T 4gud_A 16 SSVKFAIERLGYAVTISR---DPQV----VLAADKLFLPGVGTASEAMKNLTERDLIELVKRVE-----KPLLGICLGMQ 83 (211)
T ss_dssp HHHHHHHHHTTCCEEEEC---CHHH----HHHCSEEEECCCSCHHHHHHHHHHTTCHHHHHHCC-----SCEEEETHHHH
T ss_pred HHHHHHHHHCCCEEEEEC---CHHH----HhCCCEEEECCCCCHHHHHHHHHhcChHHHHHHcC-----CCEEEEchhHh
Confidence 578899999999998763 4554 55789999999876322211111 24567777777 99999999999
Q ss_pred HHHHHhcCcccc-------cccccCC-------Ccee-eeeeee-cCCCCCcccccCChhhhhhcCCccceeeeeccccc
Q 025574 167 LLTMIISKDKNI-------LESFNAA-------DQAS-TLQFME-NTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPC 230 (250)
Q Consensus 167 lL~~~~GG~~~~-------l~~~~~~-------~~~~-pi~~~~-~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~ 230 (250)
+|+.++||+... +...+.. .... ...+.. .....+++|+++++ ...+|++|++.+.
T Consensus 84 lL~~~~g~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~~~H~~~v~ 155 (211)
T 4gud_A 84 LLGKLSEEKGQKADEIVQCLGLVDGEVRLLQTGDLPLPHMGWNTVQVKEGHPLFNGIEP--------DAYFYFVHSFAMP 155 (211)
T ss_dssp TTSSEECCC----CCCEECCCSSSCEEEECCCTTSCSSEEEEECCEECTTCGGGTTCCT--------TCCEEEEESEECC
T ss_pred HHHHHhCCcccccCCccccceeccceEEEcccCCcceeeccceeeeeeccChhhcCCCC--------CcEEEEEeeEEeC
Confidence 999998876321 1111100 0000 011111 01114567776664 4468999999998
Q ss_pred c-ceEEEEeecCCCeEEEee
Q 025574 231 T-INLLSTSVARFNCLKILK 249 (250)
Q Consensus 231 ~-f~vlA~s~D~~g~~Fvs~ 249 (250)
+ +.++|++ + +|..|+++
T Consensus 156 ~~~~~~a~~-~-~g~~~~~~ 173 (211)
T 4gud_A 156 VGDYTIAQC-E-YGQPFSAA 173 (211)
T ss_dssp CCTTEEEEE-E-SSSEEEEE
T ss_pred CCCeEEEEe-c-CCCeEEEE
Confidence 7 8889988 3 57778775
No 6
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=99.75 E-value=1.5e-17 Score=139.94 Aligned_cols=131 Identities=11% Similarity=0.132 Sum_probs=83.6
Q ss_pred HHHHHHHHHHcCCeEEEeecCCChhhHHHhccc--CCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccch
Q 025574 87 AASYVKFVESAGARVIPLIYNEPEDVLFEKLEL--VNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (250)
Q Consensus 87 ~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~--~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG 164 (250)
..+++++|+++|+++++++++.+.+++.+.+.. .+++|++||+.. +...+....+++. ++.+ +||||||+|
T Consensus 13 ~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~-~~~~~~~~~l~~~-~~~~-----~PilGIC~G 85 (192)
T 1i1q_B 13 TWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGV-PSEAGCMPELLTR-LRGK-----LPIIGICLG 85 (192)
T ss_dssp HHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSC-GGGSTTHHHHHHH-HBTT-----BCEEEETHH
T ss_pred HHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCcC-chhCchHHHHHHH-HhcC-----CCEEEECcC
Confidence 457899999999999999987665665443332 346888888873 2111223355654 4556 999999999
Q ss_pred hHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc----ceEEEEe
Q 025574 165 FELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT----INLLSTS 238 (250)
Q Consensus 165 ~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~----f~vlA~s 238 (250)
||+|+.++||+..... .. ..+...... . . .+++|+++|+. ..+|++|+|.+.. ++++|++
T Consensus 86 ~Qll~~~~Gg~v~~~~-~~-~~g~~~~~~--~-~-~~~l~~~~~~~--------~~v~~~H~~~v~~lp~~~~v~a~~ 149 (192)
T 1i1q_B 86 HQAIVEAYGGYVGQAG-EI-LHGKATSIE--H-D-GQAMFAGLANP--------LPVARYHSLVGSNVPAGLTINAHF 149 (192)
T ss_dssp HHHHHHHTSCCCCC----C-CSSEEEEEE--E-C-CCGGGTTSCSS--------EEEEECCC---CCCCTTCEEEEEE
T ss_pred hHHHHHHhCCEEEeCC-Cc-EecceeEEe--c-C-CChHHhcCCCC--------cEEEechhhHhhhCCCccEEEECC
Confidence 9999999999742121 11 122222111 1 2 46788877643 4689999999854 8888854
No 7
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=99.75 E-value=5.8e-18 Score=142.85 Aligned_cols=130 Identities=12% Similarity=0.115 Sum_probs=88.1
Q ss_pred HHHHHHHHHcCCeEEEeecCC-ChhhHHHhcccCCEEEECCCCCCCccc--hHHHHHHHHHHHHhCCCCCCceEEcccch
Q 025574 88 ASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dgvIlpGG~~~~~~~--~~~~~~li~~~~~~~~~g~~~PILGIClG 164 (250)
..++++|+++|+++++++++. +.+++.. .++||||++||+...... .....++++++ +.+ +|+||||+|
T Consensus 15 ~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dglil~gG~~~~~~~~~~~~~~~~i~~~-~~~-----~PvLGIC~G 86 (195)
T 1qdl_B 15 YNIAQIVGELGSYPIVIRNDEISIKGIER--IDPDRLIISPGPGTPEKREDIGVSLDVIKYL-GKR-----TPILGVCLG 86 (195)
T ss_dssp HHHHHHHHHTTCEEEEEETTTSCHHHHHH--HCCSEEEECCCSSCTTSHHHHTTHHHHHHHH-TTT-----SCEEEETHH
T ss_pred HHHHHHHHhCCCEEEEEeCCCCCHHHHhh--CCCCEEEECCCCCChhhhhhhhHHHHHHHHh-cCC-----CcEEEEehH
Confidence 468899999999999998763 2333322 168999999987632111 11123666664 555 999999999
Q ss_pred hHHHHHHhcCcccccccccCCCceeeeeeeecCCCCC--cccccCChhhhhhcCCccceeeeecccccc----ceEEEEe
Q 025574 165 FELLTMIISKDKNILESFNAADQASTLQFMENTSIEG--TVFQRFPPKLIKKLSTDCLVMQNHHVRPCT----INLLSTS 238 (250)
Q Consensus 165 ~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s--~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~----f~vlA~s 238 (250)
||+|+.++||+.... ....++.+.++.++. .+ ++|+++|+. ..++++|+|.+.. ++++|++
T Consensus 87 ~QlL~~~~gg~v~~~-~~~~~g~~~~v~~~~----~~~~~l~~~~~~~--------~~v~~~H~~~v~~l~~~~~vla~s 153 (195)
T 1qdl_B 87 HQAIGYAFGAKIRRA-RKVFHGKISNIILVN----NSPLSLYYGIAKE--------FKATRYHSLVVDEVHRPLIVDAIS 153 (195)
T ss_dssp HHHHHHHTTCEEEEE-EEEEEEEEEEEEECC----SSCCSTTTTCCSE--------EEEEEEEEEEEECCCTTEEEEEEE
T ss_pred HHHHHHHhCCEEecc-CCCcCCCceEEEECC----CCHhHHHhcCCCc--------eEEeccccchhhhCCCCcEEEEEE
Confidence 999999999984221 111233334454432 34 788887643 3589999999954 8999998
No 8
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=99.75 E-value=6.3e-18 Score=141.60 Aligned_cols=130 Identities=18% Similarity=0.244 Sum_probs=87.9
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHH
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~Ql 167 (250)
.+++++|+++|+++++++++.+.+++.. .++||||+|||++ +.......++++.+.+.+ +|+||||+|||+
T Consensus 14 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~--~~~dglil~Gg~~--~~~~~~~~~~i~~~~~~~-----~PilGIC~G~Q~ 84 (189)
T 1wl8_A 14 HRIWRTLRYLGVETKIIPNTTPLEEIKA--MNPKGIIFSGGPS--LENTGNCEKVLEHYDEFN-----VPILGICLGHQL 84 (189)
T ss_dssp HHHHHHHHHTTCEEEEEETTCCHHHHHH--TCCSEEEECCCSC--TTCCTTHHHHHHTGGGTC-----SCEEEETHHHHH
T ss_pred HHHHHHHHHCCCeEEEEECCCChHHhcc--cCCCEEEECCCCC--hhhhhhHHHHHHHHhhCC-----CeEEEEcHHHHH
Confidence 4788999999999999997665444322 3699999999983 322222345566555566 999999999999
Q ss_pred HHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc----ceEEEEeec
Q 025574 168 LTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT----INLLSTSVA 240 (250)
Q Consensus 168 L~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~----f~vlA~s~D 240 (250)
|+.++||+.... .. .+.+..++... . .+++|+++|+. ..+|++|++.+.. ++++|++.|
T Consensus 85 l~~~~gg~v~~~-~~-~~~G~~~~~~~---~-~~~l~~~~~~~--------~~~~~~h~~~v~~l~~~~~vla~s~~ 147 (189)
T 1wl8_A 85 IAKFFGGKVGRG-EK-AEYSLVEIEII---D-EXEIFKGLPKR--------LKVWESHMDEVKELPPKFKILARSET 147 (189)
T ss_dssp HHHHHTCEEEEC-SC-CSCEEEEEEES---C-C--CCTTSCSE--------EEEEECCSEEEEECCTTEEEEEEESS
T ss_pred HHHHhCCceecC-CC-cccCceeEEEe---c-CchHHhCCCCc--------eEEEEEeeeehhhCCCCcEEEEEcCC
Confidence 999999984321 11 23333334332 2 56788877643 3468888887732 899999954
No 9
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.74 E-value=2e-18 Score=166.28 Aligned_cols=153 Identities=11% Similarity=0.151 Sum_probs=103.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHH
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI 138 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~ 138 (250)
.++.|+|+... .+|. .+++++|+++|+.+++++++.+.+++... ++||||||||++. .|...
T Consensus 6 ~~~~IlIlD~g-------------~~~~-~~i~r~lr~~G~~~~i~p~~~~~~~i~~~--~~dgiILsGGp~s--~~~~~ 67 (525)
T 1gpm_A 6 HKHRILILDFG-------------SQYT-QLVARRVRELGVYCELWAWDVTEAQIRDF--NPSGIILSGGPES--TTEEN 67 (525)
T ss_dssp TSSEEEEEECS-------------CTTH-HHHHHHHHHTTCEEEEEESCCCHHHHHHH--CCSEEEECCCSSC--TTSTT
T ss_pred CCCEEEEEECC-------------CccH-HHHHHHHHHCCCEEEEEECCCCHHHHhcc--CCCEEEECCcCcc--ccccC
Confidence 34788998533 3343 56889999999999999998777776543 5799999999862 11110
Q ss_pred HHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCc
Q 025574 139 VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTD 218 (250)
Q Consensus 139 ~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~ 218 (250)
...+.+.+++.+ +||||||+|||+|+.++||++.... ..+.+...+.+.. +++||+++|..........
T Consensus 68 ~~~~~~~~~~~g-----~PvLGIC~G~Qlla~~~GG~V~~~~--~~e~G~~~v~~~~----~~~L~~~l~~~~~~~~~~~ 136 (525)
T 1gpm_A 68 SPRAPQYVFEAG-----VPVFGVCYGMQTMAMQLGGHVEASN--EREFGYAQVEVVN----DSALVRGIEDALTADGKPL 136 (525)
T ss_dssp CCCCCGGGGTSS-----SCEEEETHHHHHHHHHHTCEEECCS--SCEEEEEEEEECS----CCTTTTTCCSEECTTSCEE
T ss_pred CcchHHHHHHCC-----CCEEEEChHHHHHHHHcCCEEEeCC--CcccceEEEEeCC----CCHhhccCccccccccccc
Confidence 011223344556 9999999999999999999843221 2234445555432 4679998875322222224
Q ss_pred cceeeeecccccc----ceEEEEeec
Q 025574 219 CLVMQNHHVRPCT----INLLSTSVA 240 (250)
Q Consensus 219 ~~v~~~Hs~~V~~----f~vlA~s~D 240 (250)
..++++|++.|.. |+++|++.|
T Consensus 137 ~~v~~~H~~~V~~lp~g~~v~A~s~~ 162 (525)
T 1gpm_A 137 LDVWMSHGDKVTAIPSDFITVASTES 162 (525)
T ss_dssp EEEEEEECSEEEECCTTCEEEEECSS
T ss_pred eEEEEEccceeeeCCCCCEEEEECCC
Confidence 5689999999964 999999844
No 10
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=99.74 E-value=7.4e-18 Score=146.93 Aligned_cols=133 Identities=18% Similarity=0.178 Sum_probs=92.8
Q ss_pred HHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCC--Cc---cchHHHHHHHHHHHHhCCCCCCceEEcccc
Q 025574 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--DG---LYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~--~~---~~~~~~~~li~~~~~~~~~g~~~PILGICl 163 (250)
++.+++++.|+.+++++++. .+.+++.++.+||||||||+.. +. .+.....++++++++.+ +|+||||+
T Consensus 28 ~i~~~l~~~G~~v~v~~~~~-~~~~~~~l~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~~~~~~~-----~PiLGIC~ 101 (239)
T 1o1y_A 28 MMEDIFREKNWSFDYLDTPK-GEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKE-----IPFLGICL 101 (239)
T ss_dssp HHHHHHHHTTCEEEEECGGG-TCCCSSCGGGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHT-----CCEEEETH
T ss_pred HHHHHHHhCCCcEEEeCCcC-ccccccchhcCCEEEECCCCccccCCccChhHHHHHHHHHHHHHCC-----CCEEEEch
Confidence 45679999999988777643 2223334678999999999841 21 22233457888888888 99999999
Q ss_pred hhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc---ceEEEEeec
Q 025574 164 GFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT---INLLSTSVA 240 (250)
Q Consensus 164 G~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~---f~vlA~s~D 240 (250)
|||+|+.++||+... .....+.++.++... . .++||+++|+. ..+|++|++.+.. ++++|++.|
T Consensus 102 G~QlL~~alGG~v~~-~~~g~~~G~~~v~~~---~-~~~l~~~~~~~--------~~~~~~H~~~v~lp~~~~vlA~s~~ 168 (239)
T 1o1y_A 102 GSQMLAKVLGASVYR-GKNGEEIGWYFVEKV---S-DNKFFREFPDR--------LRVFQWHGDTFDLPRRATRVFTSEK 168 (239)
T ss_dssp HHHHHHHHTTCCEEE-CTTCCEEEEEEEEEC---C-CCGGGTTSCSE--------EEEEEEESEEECCCTTCEEEEECSS
T ss_pred hHHHHHHHcCCeEec-CCCCCccccEEEEEC---C-CCchHHhCCCC--------ceeEeecCCccccCCCCEEEEEcCC
Confidence 999999999998421 112123334445421 2 57899887643 3589999998853 899999844
No 11
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.73 E-value=5.4e-18 Score=163.39 Aligned_cols=150 Identities=13% Similarity=0.145 Sum_probs=98.9
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHH
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIV 139 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~ 139 (250)
+..|.|+.. +.+|. .+++++|+++|+.+++++++.+.+++... ++||||||||+.. .+....
T Consensus 10 ~~~I~IlD~-------------g~~~~-~~i~r~lr~~Gv~~~i~p~~~~~~~i~~~--~~dgIILsGGp~s--v~~~~~ 71 (527)
T 3tqi_A 10 QHRILILDF-------------GSQYA-QLIARRVREIGVYCELMPCDIDEETIRDF--NPHGIILSGGPET--VTLSHT 71 (527)
T ss_dssp CSEEEEEEC-------------SCTTH-HHHHHHHHHHTCEEEEEETTCCSSSSTTT--CCSEEEECCCCC---------
T ss_pred CCeEEEEEC-------------CCccH-HHHHHHHHHCCCeEEEEECCCCHHHHHhc--CCCEEEECCcCcc--cccCCC
Confidence 457888753 23444 56889999999999999988766654321 5699999999872 121111
Q ss_pred HHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCcc
Q 025574 140 EKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDC 219 (250)
Q Consensus 140 ~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~ 219 (250)
..+.+.+++.+ +||||||+|||+|+.++||++... ...+.+...+.+.. .++||+++|+.+........
T Consensus 72 ~~~~~~~~~~~-----~PvLGIC~G~Qlla~~lGG~V~~~--~~~e~G~~~v~~~~----~~~l~~~l~~~~~~~~~~~~ 140 (527)
T 3tqi_A 72 LRAPAFIFEIG-----CPVLGICYGMQTMAYQLGGKVNRT--AKAEFGHAQLRVLN----PAFLFDGIEDQVSPQGEPLL 140 (527)
T ss_dssp --CCCSTTTSS-----SCEEEETHHHHHHHHHSSSCBC-------CEEEEEEEESS----CTTTTSSCCSBCCTTSCCEE
T ss_pred hhhHHHHHhcC-----CCEEEEChHHHHHHHHcCCeEEeC--CCccccceEEEEcC----CChhhcCCccccccccccce
Confidence 23334455566 999999999999999999984322 12344455555432 46799998753211111234
Q ss_pred ceeeeecccccc----ceEEEEe
Q 025574 220 LVMQNHHVRPCT----INLLSTS 238 (250)
Q Consensus 220 ~v~~~Hs~~V~~----f~vlA~s 238 (250)
.+|++|++.|.. |+++|++
T Consensus 141 ~v~~~H~d~v~~lp~g~~v~A~s 163 (527)
T 3tqi_A 141 DVWMSHGDIVSELPPGFEATACT 163 (527)
T ss_dssp EEEEESSSCBCSCCTTCEEEEEE
T ss_pred EEEEEcccchhccCCCCEEEEEe
Confidence 689999999974 9999998
No 12
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=99.73 E-value=4.4e-18 Score=149.71 Aligned_cols=134 Identities=13% Similarity=0.094 Sum_probs=93.3
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCC--C-ccchHHHHHHHHHHHHhCCCCCCceEEcccch
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--D-GLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~--~-~~~~~~~~~li~~~~~~~~~g~~~PILGIClG 164 (250)
.++.+++++.|.++.++..... +.++..++++||||+|||+.. + ..+.....++++.+++.+ +||||||+|
T Consensus 18 ~~i~~~l~~~G~~v~v~~~~~~-~~~p~~~~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~~-----~PvlGIC~G 91 (250)
T 3m3p_A 18 GHFGDFLAGEHIPFQVLRMDRS-DPLPAEIRDCSGLAMMGGPMSANDDLPWMPTLLALIRDAVAQR-----VPVIGHCLG 91 (250)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGT-CCCCSCGGGSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHHHT-----CCEEEETHH
T ss_pred HHHHHHHHHCCCeEEEEeccCC-CcCcCccccCCEEEECCCCCcccccchHHHHHHHHHHHHHHcC-----CCEEEECHH
Confidence 3567899999999988875432 112223678999999999963 2 234444457888888888 999999999
Q ss_pred hHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc---ceEEEEee
Q 025574 165 FELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT---INLLSTSV 239 (250)
Q Consensus 165 ~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~---f~vlA~s~ 239 (250)
||+|+.++||++... . ..+.++.++.++.... .+++| ++|+. ..+|++|++.++. ++++|++.
T Consensus 92 ~Qll~~~lGG~V~~~-~-~~e~G~~~v~~~~~~~-~~~l~-g~~~~--------~~v~~~H~~~v~lp~~~~vlA~s~ 157 (250)
T 3m3p_A 92 GQLLAKAMGGEVTDS-P-HAEIGWVRAWPQHVPQ-ALEWL-GTWDE--------LELFEWHYQTFSIPPGAVHILRSE 157 (250)
T ss_dssp HHHHHHHTTCCEEEE-E-EEEEEEEEEEECSSHH-HHHHH-SCSSC--------EEEEEEEEEEECCCTTEEEEEEET
T ss_pred HHHHHHHhCCEEEeC-C-CCceeeEEEEEecCCC-Ccccc-cCCCc--------cEEEEEccceeecCCCCEEEEEeC
Confidence 999999999984321 1 1234455565532211 24577 66643 4589999999854 89999983
No 13
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=99.72 E-value=2.2e-17 Score=153.15 Aligned_cols=155 Identities=14% Similarity=0.172 Sum_probs=102.5
Q ss_pred ccccccccCCCCCCC-CCC----------------CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEe
Q 025574 42 SLSVLVPRCPVPDSK-LNY----------------RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPL 104 (250)
Q Consensus 42 ~~~~~~~~~~~~~~~-~~~----------------~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i 104 (250)
.+++.+|||+.|... ... ++.|+|+.. +. ..+++++|+++|++++++
T Consensus 155 ~~l~~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~viD~-G~---------------k~ni~r~L~~~G~~v~vv 218 (379)
T 1a9x_B 155 MDLAKEVTTAEAYSWTQGSWTLTGGLPQAKKEDELPFHVVAYDF-GA---------------KRNILRMLVDRGCRLTIV 218 (379)
T ss_dssp CBCHHHHSCSSCEEECCCCCBTTTBSCCCCCGGGCCEEEEEEES-SC---------------CHHHHHHHHHTTEEEEEE
T ss_pred cCccceeCCCCCEEeCCCCcccccccccccccccCCCEEEEEEC-CC---------------hHHHHHHHHHCCCEEEEE
Confidence 357889999876332 111 356777664 11 146889999999999999
Q ss_pred ecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcccccccccC
Q 025574 105 IYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNA 184 (250)
Q Consensus 105 ~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~ 184 (250)
+++.+.+++.. .++|||||+||+.. +.......++++++++++ +||||||+|||+|+.++||++..+ ++..
T Consensus 219 p~~~~~e~i~~--~~~DGliLsGGPgd-p~~~~~~~~~Ir~~~~~~-----~PILGIClG~QLLa~A~GG~v~k~-~~gh 289 (379)
T 1a9x_B 219 PAQTSAEDVLK--MNPDGIFLSNGPGD-PAPCDYAITAIQKFLETD-----IPVFGICLGHQLLALASGAKTVKM-KFGH 289 (379)
T ss_dssp ETTCCHHHHHT--TCCSEEEECCCSBC-STTCHHHHHHHHHHTTSC-----CCEEEETHHHHHHHHHTTCCEEEE-EEEE
T ss_pred eccCCHHHHhh--cCCCEEEEeCCCCC-hHHHHHHHHHHHHHHHcC-----CCEEEECchHHHHHHHhCcEEEec-cccc
Confidence 98877665542 36999999999873 322223347788887777 999999999999999999984322 2322
Q ss_pred CCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc------ceEEEEeec
Q 025574 185 ADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT------INLLSTSVA 240 (250)
Q Consensus 185 ~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~------f~vlA~s~D 240 (250)
++..+|+... . ..++ ..+.++|+|+|.+ +++++++.+
T Consensus 290 ~g~n~pv~~~---~-~g~v---------------~its~~H~~aV~~~~Lp~~~~v~a~s~~ 332 (379)
T 1a9x_B 290 HGGNHPVKDV---E-KNVV---------------MITAQNHGFAVDEATLPANLRVTHKSLF 332 (379)
T ss_dssp EEEEEEEEET---T-TTEE---------------EEEEEEEEEEECSTTCCTTEEEEEEETT
T ss_pred ccCceeeEec---C-CCcE---------------EEEecCccceEecccCCCCeEEEEEeCC
Confidence 2222333210 0 1111 1345689999963 889998843
No 14
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=99.72 E-value=3.3e-17 Score=142.35 Aligned_cols=135 Identities=18% Similarity=0.192 Sum_probs=94.4
Q ss_pred HHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCC------ccchHH--HHHHHHHHHHhCCCCCCceEEc
Q 025574 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD------GLYYAI--VEKVFKKILEKNDAGDHFPLYA 160 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~------~~~~~~--~~~li~~~~~~~~~g~~~PILG 160 (250)
.+.+++++.|+++.++..... +.+++.++++||||++||+... .+|... ..++++.+++.+ +||||
T Consensus 16 ~~~~~l~~~g~~~~~~~~~~~-~~~p~~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~PvLG 89 (236)
T 3l7n_A 16 AYLAWAALRGHDVSMTKVYRY-EKLPKDIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSE-----KIIVG 89 (236)
T ss_dssp HHHHHHHHTTCEEEEEEGGGT-CCCCSCGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHTT-----CEEEE
T ss_pred HHHHHHHHCCCeEEEEeeeCC-CCCCCCccccCEEEECCCCCCcccccccCcccchHHHHHHHHHHHHcC-----CCEEE
Confidence 456799999999988876432 1122236789999999998731 123322 457888888888 99999
Q ss_pred ccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc---ceEEEE
Q 025574 161 HCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT---INLLST 237 (250)
Q Consensus 161 IClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~---f~vlA~ 237 (250)
||+|||+|+.++||++... . ..+.+..++.++.... .+++|+++|+.+ .++++|++.... ++++|+
T Consensus 90 IClG~QlL~~~~Gg~v~~~-~-~~~~G~~~v~~~~~~~-~~~l~~~~~~~~--------~v~~~H~~~~~lp~~~~vla~ 158 (236)
T 3l7n_A 90 VCLGAQLMGVAYGADYLHS-P-KKEIGNYLISLTEAGK-MDSYLSDFSDDL--------LVGHWHGDMPGLPDKAQVLAI 158 (236)
T ss_dssp ETHHHHHHHHHTTCCCEEE-E-EEEEEEEEEEECTTGG-GCGGGTTSCSEE--------EEEEEEEEECCCCTTCEEEEE
T ss_pred EchHHHHHHHHhCCEEecC-C-CceeeeEEEEEccCcc-cChHHhcCCCCc--------EEEEecCCcccCCChheEEEE
Confidence 9999999999999984211 1 1234556666544322 467898887543 588999987542 899999
Q ss_pred eec
Q 025574 238 SVA 240 (250)
Q Consensus 238 s~D 240 (250)
+.+
T Consensus 159 s~~ 161 (236)
T 3l7n_A 159 SQG 161 (236)
T ss_dssp CSS
T ss_pred CCC
Confidence 844
No 15
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.69 E-value=6.8e-18 Score=161.77 Aligned_cols=134 Identities=14% Similarity=0.225 Sum_probs=92.2
Q ss_pred cchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 82 NASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 82 ~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
+.+|. .+++++|+++|+.+++++++.+.+++... ++||||||||++. .|......+.+.+++.+ +|||||
T Consensus 8 g~~~~-~~i~r~l~~~G~~~~i~p~~~~~~~i~~~--~~dgiIlsGGp~s--~~~~~~~~~~~~~~~~~-----~PvLGI 77 (503)
T 2ywb_A 8 GSQYT-RLIARRLRELRAFSLILPGDAPLEEVLKH--RPQALILSGGPRS--VFDPDAPRPDPRLFSSG-----LPLLGI 77 (503)
T ss_dssp SCTTH-HHHHHHHHTTTCCEEEEETTCCHHHHHTT--CCSEEEECCCSSC--SSCTTCCCCCGGGGCSS-----CCEEEE
T ss_pred CCcHH-HHHHHHHHHCCCEEEEEECCCCHHHHHhc--CCCEEEECCCCch--hccCCCcchHHHHHhCC-----CCEEEE
Confidence 34565 67889999999999999998777766542 5799999999862 11110011123344556 999999
Q ss_pred cchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc----ceEEEE
Q 025574 162 CLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT----INLLST 237 (250)
Q Consensus 162 ClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~----f~vlA~ 237 (250)
|+|||+|+.++||++.... ..+.+...+++. .++||+++|+ ...++++|+++|.. |+++|+
T Consensus 78 C~G~Qlla~~~GG~v~~~~--~~e~G~~~v~~~-----~~~l~~~~~~--------~~~v~~~H~~~v~~lp~g~~v~A~ 142 (503)
T 2ywb_A 78 CYGMQLLAQELGGRVERAG--RAEYGKALLTRH-----EGPLFRGLEG--------EVQVWMSHQDAVTAPPPGWRVVAE 142 (503)
T ss_dssp THHHHHHHHTTTCEEECC-----CEEEEECSEE-----CSGGGTTCCS--------CCEEEEECSCEEEECCTTCEEEEE
T ss_pred CHHHHHHHHHhCCeEeeCC--CCccceEEEEec-----CcHHhhcCCC--------ccEEEEECCCccccCCCCCEEEEE
Confidence 9999999999999843221 123344444432 2578888764 34589999999964 999999
Q ss_pred eec
Q 025574 238 SVA 240 (250)
Q Consensus 238 s~D 240 (250)
+.|
T Consensus 143 s~~ 145 (503)
T 2ywb_A 143 TEE 145 (503)
T ss_dssp CSS
T ss_pred ECC
Confidence 844
No 16
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.68 E-value=6.4e-17 Score=156.83 Aligned_cols=139 Identities=17% Similarity=0.245 Sum_probs=93.6
Q ss_pred chhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCC--CccchHHHHHHHHHHHHhCCCCCCceEEc
Q 025574 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--DGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (250)
Q Consensus 83 ~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~--~~~~~~~~~~li~~~~~~~~~g~~~PILG 160 (250)
.+|. .+++++|+++|+.+++++++.+.+++.. .++||||||||+.. +.........+++.+.+.+ +|+||
T Consensus 17 s~~~-~~I~r~lre~Gv~~eiv~~~~~~~~i~~--~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~~g-----~PvLG 88 (556)
T 3uow_A 17 SQYF-HLIVKRLNNIKIFSETKDYGVELKDIKD--MNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKK-----IPIFG 88 (556)
T ss_dssp CTTH-HHHHHHHHHTTCCEEEEETTCCGGGTTT--SCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHHTT-----CCEEE
T ss_pred CccH-HHHHHHHHHCCCeEEEEECCCCHHHHhh--cCCCEEEECCCCCcccccCCcchhHHHHHHhhhcC-----CCEEE
Confidence 4453 4688899999999999998776665432 27899999999862 1111111236778777778 99999
Q ss_pred ccchhHHHHHHhcCcccccccccCCCceeeeeeeecC---------------------------CCCCcccccC-Chhhh
Q 025574 161 HCLGFELLTMIISKDKNILESFNAADQASTLQFMENT---------------------------SIEGTVFQRF-PPKLI 212 (250)
Q Consensus 161 IClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~---------------------------~~~s~Lf~~l-p~~~~ 212 (250)
||+|||+|+.++||++... ...+.+...+.+.... ...++||+++ |
T Consensus 89 IC~G~QlLa~~lGG~V~~~--~~~E~G~~~l~~~~~~~~~~~p~v~~~~~~~~~mg~~~n~~~~~~~~~Lf~gl~~---- 162 (556)
T 3uow_A 89 ICYGMQEIAVQMNGEVKKS--KTSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKS---- 162 (556)
T ss_dssp ETHHHHHHHHHTTCEEEEE--EEEEEEEEEEEECCTTGGGGCSGGGGC---CCHHHHHTTSCCCC--CGGGTTCCS----
T ss_pred ECHHHHHHHHHhCCcEecC--CCcccCCcceeeccCcccccccceecccccccccccccccccccccchhhccccc----
Confidence 9999999999999984221 1123333444443221 0022466655 4
Q ss_pred hhcCCccceeeeecccccc----ceEEEEee
Q 025574 213 KKLSTDCLVMQNHHVRPCT----INLLSTSV 239 (250)
Q Consensus 213 ~~l~~~~~v~~~Hs~~V~~----f~vlA~s~ 239 (250)
+...++++|++.+.. |+++|++.
T Consensus 163 ----~~~~v~~~H~d~V~~lp~g~~vlA~s~ 189 (556)
T 3uow_A 163 ----DITTVWMNHNDEVTKIPENFYLVSSSE 189 (556)
T ss_dssp ----SEEEEEEEEEEEEEECCTTCEEEEEET
T ss_pred ----CceEEEEEccceeeccCCCcEEEEEeC
Confidence 334689999999864 99999983
No 17
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.68 E-value=1.3e-16 Score=141.87 Aligned_cols=102 Identities=17% Similarity=0.136 Sum_probs=68.4
Q ss_pred cEEEEeCCCC-CCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChh--h----HHHhcccCCEEEECCCCCCCc
Q 025574 61 PVIGIVTHPG-DGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED--V----LFEKLELVNGVLYTGGWAKDG 133 (250)
Q Consensus 61 PvIGI~~~~~-~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~--~----l~~~l~~~dgvIlpGG~~~~~ 133 (250)
++|+|++..+ . ..+.+.|+.. ++.++..+.|+++.+++.+...- . +.+.++.+||||||||+.. +
T Consensus 9 ~~Iaivg~y~~~------~~dny~S~~~-aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~-~ 80 (273)
T 2w7t_A 9 VRIAFVGKYLQD------AGDTYFSVLQ-CFEHCQIALQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPGGFGN-R 80 (273)
T ss_dssp EEEEEEECCHHH------HTTTTHHHHH-HHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHHTCSEEEECCCCTT-T
T ss_pred CEEEEEeCCCcC------CchHHHHHHH-HHHHHHHhcCCceEEeccChhhcccccchhHHHHHhhCCEEEecCCCCC-c
Confidence 8999996431 0 0123444433 35555556677788777653210 0 3345778999999999763 2
Q ss_pred cchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcc
Q 025574 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDK 176 (250)
Q Consensus 134 ~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~ 176 (250)
... ....+++++++.+ +|+||||+|||+|+.++||++
T Consensus 81 ~~~-~~~~~i~~~~~~~-----~PilGIC~G~Qll~~a~Gg~v 117 (273)
T 2w7t_A 81 GVD-GKCAAAQVARMNN-----IPYFGVXLGMQVAVIELSRNV 117 (273)
T ss_dssp THH-HHHHHHHHHHHHT-----CCEEEETHHHHHHHHHHHHHT
T ss_pred Cch-hHHHHHHHHHHCC-----CcEEEECcCHHHHHHHHhCcc
Confidence 222 2337788888888 999999999999999999984
No 18
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.65 E-value=1.2e-15 Score=129.25 Aligned_cols=148 Identities=14% Similarity=0.101 Sum_probs=97.5
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCcc-----
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGL----- 134 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~----- 134 (250)
.+.|+|+..++. ....+++++|+++|+++++++... .++.+|+||+|||++....
T Consensus 2 ~~~i~il~~~~~-------------~~~~~~~~~l~~~g~~~~~~~~~~-------~~~~~d~lil~Gg~~~~~~~~~~~ 61 (213)
T 3d54_D 2 KPRACVVVYPGS-------------NCDRDAYHALEINGFEPSYVGLDD-------KLDDYELIILPGGFSYGDYLRPGA 61 (213)
T ss_dssp CCEEEEECCTTE-------------EEHHHHHHHHHTTTCEEEEECTTC-------CCSSCSEEEECEECGGGGCSSTTH
T ss_pred CcEEEEEEcCCC-------------CccHHHHHHHHHCCCEEEEEecCC-------CcccCCEEEECCCCchhhhhcccc
Confidence 567999876542 111256889999999998887532 2678999999999863211
Q ss_pred ch--HHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH--hcCcccccccccCCCceeeeeeeecCCCCCcccccCChh
Q 025574 135 YY--AIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI--ISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPK 210 (250)
Q Consensus 135 ~~--~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~--~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~ 210 (250)
+. ....++++.+.+++ +||||||+|+|+|+.+ ++|++........+.+..++.+.. . +++||+.+++.
T Consensus 62 ~~~~~~~~~~l~~~~~~~-----~pilgIC~G~qlLa~aGll~g~v~~~~~~~~~~g~~~v~~~~--~-~~~l~~~~~~~ 133 (213)
T 3d54_D 62 VAAREKIAFEIAKAAERG-----KLIMGICNGFQILIEMGLLKGALLQNSSGKFICKWVDLIVEN--N-DTPFTNAFEKG 133 (213)
T ss_dssp HHHTSTTHHHHHHHHHHT-----CEEEECHHHHHHHHHHTSSCSEEECCSSSSCBCCEEEEEECC--C-SSTTSTTSCTT
T ss_pred ccccHHHHHHHHHHHHCC-----CEEEEECHHHHHHHHcCCCCCCeecCCCCceEeeeEEEEeCC--C-CCceeeccCCC
Confidence 11 12247778887888 9999999999999999 888632111111244455555431 2 57788877631
Q ss_pred hhhhcCCccceee--ee---cccccc--ceEEEEeecCCC
Q 025574 211 LIKKLSTDCLVMQ--NH---HVRPCT--INLLSTSVARFN 243 (250)
Q Consensus 211 ~~~~l~~~~~v~~--~H---s~~V~~--f~vlA~s~D~~g 243 (250)
..++. +| ++.+.+ ++++|++.|.+|
T Consensus 134 --------~~~~~~~~H~~~s~~~~~~~~~~~a~~~~~ng 165 (213)
T 3d54_D 134 --------EKIRIPIAHGFGRYVKIDDVNVVLRYVKDVNG 165 (213)
T ss_dssp --------CEEEEECCBSSCEEECSSCCEEEEEESSCSSC
T ss_pred --------CEEEEEeecCceEEEecCCCcEEEEEcCCCCC
Confidence 12333 78 777864 888898855445
No 19
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=158.75 Aligned_cols=127 Identities=12% Similarity=0.146 Sum_probs=86.8
Q ss_pred HHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHH
Q 025574 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELL 168 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL 168 (250)
.+.++|+++|+.++++|++.+.+++.. .++||||||||++. .+......+.+.+++.+ +||||||+|||+|
T Consensus 44 liar~lre~Gv~~~ivp~~~~~e~i~~--~~~dGIILsGGp~s--~~~~~~~~~~~~i~~~g-----~PvLGIC~G~QlL 114 (697)
T 2vxo_A 44 VIDRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPNS--VYAEDAPWFDPAIFTIG-----KPVLGICYGMQMM 114 (697)
T ss_dssp HHHHHHHHTTCCEEEEETTCCHHHHHH--HTCSEEEEEECC---------CCCCCGGGTTSS-----CCEEEEEHHHHHH
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHhh--cCCCEEEECCCCCc--ccCccchhHHHHHHhCC-----CCEEEECHHHHHH
Confidence 356899999999999999887776643 47999999999972 11111001223334455 9999999999999
Q ss_pred HHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc----ceEEEEe
Q 025574 169 TMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT----INLLSTS 238 (250)
Q Consensus 169 ~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~----f~vlA~s 238 (250)
+.++||++.... ..+.+..++.+.. ++.||+++|+. ..++++|+++|.. |+++|++
T Consensus 115 a~~lGG~v~~~~--~~e~G~~~v~~~~----~~~Lf~~l~~~--------~~v~~~H~~~V~~lp~g~~vlA~s 174 (697)
T 2vxo_A 115 NKVFGGTVHKKS--VREDGVFNISVDN----TCSLFRGLQKE--------EVVLLTHGDSVDKVADGFKVVARS 174 (697)
T ss_dssp HHHTTCCBCC---------CEEEEECT----TSGGGTTCCSE--------EEECCCSSCCBSSCCTTCEEEEEE
T ss_pred HHHhCCeEeecC--CCccceEEEEecC----CChhhhcCCcc--------CcceeecccceecCCCCeEEEEEe
Confidence 999999853221 2344556666532 46799888743 3588899999964 9999998
No 20
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.64 E-value=8.1e-17 Score=134.49 Aligned_cols=90 Identities=21% Similarity=0.291 Sum_probs=62.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchH-
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA- 137 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~- 137 (250)
+||+|||+..++. ..+++++|+++|+++++++.. + .++.+||||||||....+....
T Consensus 1 ~~p~Igi~~~~~~---------------~~~~~~~l~~~G~~~~~~~~~---~----~l~~~dglil~GG~~~~~~~~~~ 58 (191)
T 2ywd_A 1 MRGVVGVLALQGD---------------FREHKEALKRLGIEAKEVRKK---E----HLEGLKALIVPGGESTTIGKLAR 58 (191)
T ss_dssp --CCEEEECSSSC---------------HHHHHHHHHTTTCCCEEECSG---G----GGTTCSEEEECSSCHHHHHHHHH
T ss_pred CCcEEEEEecCCc---------------hHHHHHHHHHCCCEEEEeCCh---h----hhccCCEEEECCCChhhhHHhhh
Confidence 4899999986532 246889999999999888632 2 2567999999999521111111
Q ss_pred --HHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcC
Q 025574 138 --IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISK 174 (250)
Q Consensus 138 --~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG 174 (250)
...++++.+.+.+ + +||||||+|||+|+.++||
T Consensus 59 ~~~~~~~i~~~~~~~---~-~PilGiC~G~Q~l~~~~gg 93 (191)
T 2ywd_A 59 EYGIEDEVRKRVEEG---S-LALFGTCAGAIWLAKEIVG 93 (191)
T ss_dssp HTTHHHHHHHHHHTT---C-CEEEEETHHHHHHEEEETT
T ss_pred hhhHHHHHHHHHHCC---C-CeEEEECHHHHHHHHHhCC
Confidence 1124555554332 2 8999999999999999998
No 21
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.64 E-value=3.8e-16 Score=131.84 Aligned_cols=139 Identities=12% Similarity=0.009 Sum_probs=83.3
Q ss_pred HHHHHHHHHcC-----CeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHH----HHHHHHHHHHhCCCCCCceE
Q 025574 88 ASYVKFVESAG-----ARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI----VEKVFKKILEKNDAGDHFPL 158 (250)
Q Consensus 88 ~s~v~~le~~G-----~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~----~~~li~~~~~~~~~g~~~PI 158 (250)
.+++++|+++| +++++++... . +.+||||||||++....+... ..++++.+++.+ +||
T Consensus 14 ~s~~~~l~~~G~~~~~~~~~~~~~~~-------~-~~~dglilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~-----~Pi 80 (201)
T 1gpw_B 14 MNLYRGVKRASENFEDVSIELVESPR-------N-DLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDE-----RYV 80 (201)
T ss_dssp HHHHHHHHHHSTTBSSCEEEEECSCC-------S-SCCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHTT-----CEE
T ss_pred HHHHHHHHHcCCCCCceEEEEECCCc-------c-cCCCEEEECCCCcHHHHHHHHHhhCHHHHHHHHHHcC-----CeE
Confidence 56778999999 8888876422 2 478999999976532221111 236677777777 999
Q ss_pred EcccchhHHHHHHhc--CcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeecccccc--ceE
Q 025574 159 YAHCLGFELLTMIIS--KDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT--INL 234 (250)
Q Consensus 159 LGIClG~QlL~~~~G--G~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~--f~v 234 (250)
||||+|||+|+.++| |+...++..+.+....+........ +++++...+. +...++++|++.+.+ +++
T Consensus 81 lGIC~G~Qll~~~~g~~G~~~~l~~~~g~v~~~~~~~~~~~g-~~~l~~~~~~-------~~~~v~~~H~~~v~~~~~~v 152 (201)
T 1gpw_B 81 VGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSRRLPHMG-WNEVIFKDTF-------PNGYYYFVHTYRAVCEEEHV 152 (201)
T ss_dssp EEETHHHHTTSSEETTEEEEECCCSSSEEEEECCCSSCSEEE-EEEEEESSSS-------CCEEEEEEESEEEEECGGGE
T ss_pred EEEChhHHHHHHhhccCCCCCCcceeeeEEEEcCCCCCCccc-ceeeEeccCC-------CCCeEEEECcceeccCCCEE
Confidence 999999999999986 4322222111110000000000000 2334433321 234589999999975 899
Q ss_pred EEEeecCCCeEEEe
Q 025574 235 LSTSVARFNCLKIL 248 (250)
Q Consensus 235 lA~s~D~~g~~Fvs 248 (250)
+|++.+ +|..+.|
T Consensus 153 la~s~~-~g~~~~a 165 (201)
T 1gpw_B 153 LGTTEY-DGEIFPS 165 (201)
T ss_dssp EEEEEE-TTEEEEE
T ss_pred EEEEcc-CCceEEE
Confidence 999844 4644544
No 22
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.61 E-value=9.1e-16 Score=129.61 Aligned_cols=134 Identities=13% Similarity=0.039 Sum_probs=82.6
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchH----HHHHHHHHHHHhCCCCCCceEEcccc
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA----IVEKVFKKILEKNDAGDHFPLYAHCL 163 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~----~~~~li~~~~~~~~~g~~~PILGICl 163 (250)
.+++++|+++|+++++++.. + .++.+||||||||++..+.+.. ...++++.+++.+ +||||||+
T Consensus 16 ~~~~~~l~~~G~~~~~~~~~---~----~l~~~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~~-----~PilGIC~ 83 (200)
T 1ka9_H 16 RSAAKALEAAGFSVAVAQDP---K----AHEEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERG-----LPFLGICV 83 (200)
T ss_dssp HHHHHHHHHTTCEEEEESST---T----SCSSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTT-----CCEEECTH
T ss_pred HHHHHHHHHCCCeEEEecCh---H----HcccCCEEEECCCCcHHHHHHHHHhcCHHHHHHHHHHcC-----CeEEEEcH
Confidence 45788999999999888632 2 2668999999996653221111 1246778887888 99999999
Q ss_pred hhHHHHHH---hcCcccccccccCCCcee------eeeeeec-CCCCCcccccCChhhhhhcCCccceeeeecccccc--
Q 025574 164 GFELLTMI---ISKDKNILESFNAADQAS------TLQFMEN-TSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT-- 231 (250)
Q Consensus 164 G~QlL~~~---~GG~~~~l~~~~~~~~~~------pi~~~~~-~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~-- 231 (250)
|||+|+.+ +|| ...++.++...... ...|... .. . . |.+++ + ..++++|++.+ +
T Consensus 84 G~Qll~~~~~~~Gg-~~~l~~~~g~v~~~~~~~~~~~G~~~v~~~-~-~-l~~~~--------~-~~~~~~Hs~~~-~~~ 149 (200)
T 1ka9_H 84 GMQVLYEGSEEAPG-VRGLGLVPGEVRRFRAGRVPQMGWNALEFG-G-A-FAPLT--------G-RHFYFANSYYG-PLT 149 (200)
T ss_dssp HHHTTSSEETTSTT-CCCCCSSSSEEEECCSSSSSEEEEEECEEC-G-G-GGGGT--------T-CEEEEEESEEC-CCC
T ss_pred HHHHHHHhccccCC-cCCccccccEEEECCCCCCCceeEEEEEec-h-h-hhcCC--------C-CCEEEeccccc-CCC
Confidence 99999998 575 22333222111000 0122110 01 1 2 33332 3 45788999998 6
Q ss_pred -ceEEEEeecCCCeEEEee
Q 025574 232 -INLLSTSVARFNCLKILK 249 (250)
Q Consensus 232 -f~vlA~s~D~~g~~Fvs~ 249 (250)
.++ |++.| +|.++.++
T Consensus 150 ~~~v-a~s~~-~g~~~~~~ 166 (200)
T 1ka9_H 150 PYSL-GKGEY-EGTPFTAL 166 (200)
T ss_dssp TTCC-EEEEE-TTEEEEEE
T ss_pred CCcE-EEEEe-CCeEEEEE
Confidence 567 88844 36566654
No 23
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.61 E-value=3.3e-16 Score=130.70 Aligned_cols=120 Identities=15% Similarity=0.235 Sum_probs=75.6
Q ss_pred HHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHH--HHHHHHHHHhCCCCCCceEEcccchhH
Q 025574 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIV--EKVFKKILEKNDAGDHFPLYAHCLGFE 166 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~--~~li~~~~~~~~~g~~~PILGIClG~Q 166 (250)
+++++|+++|+++++++. ++ .++.+||||||||++ ..+.... ..+++.+.+.+ +||||||+|||
T Consensus 14 ~~~~~l~~~G~~~~~~~~---~~----~~~~~dglil~GG~~--~~~~~~~~~~~~~~~i~~~~-----~PilGIC~G~Q 79 (186)
T 2ywj_A 14 EHEEAIKKAGYEAKKVKR---VE----DLEGIDALIIPGGES--TAIGKLMKKYGLLEKIKNSN-----LPILGTCAGMV 79 (186)
T ss_dssp HHHHHHHHTTSEEEEECS---GG----GGTTCSEEEECCSCH--HHHHHHHHHTTHHHHHHTCC-----CCEEEETHHHH
T ss_pred HHHHHHHHCCCEEEEECC---hH----HhccCCEEEECCCCc--hhhhhhhhccCHHHHHHhcC-----CcEEEECHHHH
Confidence 467899999999988863 22 367899999999976 2222111 13445444444 99999999999
Q ss_pred HHHHHhcCcccccccccCCCceeeeeeeecC--C-----CCCcccccCChhhhhhcCCccceeeeeccccc---c--ceE
Q 025574 167 LLTMIISKDKNILESFNAADQASTLQFMENT--S-----IEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPC---T--INL 234 (250)
Q Consensus 167 lL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~--~-----~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~---~--f~v 234 (250)
+|+.++||+...++..+ ....... . ..+.+|.++ ++..++++|++.|. + +++
T Consensus 80 ll~~~~gg~~~~lg~~~-------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~H~~~v~~l~~~~~~v 143 (186)
T 2ywj_A 80 LLSKGTGINQILLELMD-------ITVKRNAYGRQVDSFEKEIEFKDL---------GKVYGVFIRAPVVDKILSDDVEV 143 (186)
T ss_dssp HHSSCCSSCCCCCCCSS-------EEEETTTTCSSSCCEEEEEEETTT---------EEEEEEESSCCEEEEECCTTCEE
T ss_pred HHHHHhCCCcCccCCCc-------eeEEeccCCCcccceecccccccC---------CcEEEEEEecceeeecCCCCeEE
Confidence 99999998732222211 1111000 0 011233332 23357889999883 3 899
Q ss_pred EEEe
Q 025574 235 LSTS 238 (250)
Q Consensus 235 lA~s 238 (250)
+|++
T Consensus 144 ~a~s 147 (186)
T 2ywj_A 144 IARD 147 (186)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9998
No 24
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.52 E-value=1.9e-15 Score=129.61 Aligned_cols=91 Identities=21% Similarity=0.331 Sum_probs=65.8
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCc-cch
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG-LYY 136 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~-~~~ 136 (250)
..++.|+|+..++ +| .+++++|+++|+++++++. .+ .++.+||||||||+.... .+.
T Consensus 21 ~~~~~I~il~~~~-------------~~--~~~~~~l~~~G~~~~~~~~---~~----~l~~~Dglil~GG~~~~~~~~~ 78 (219)
T 1q7r_A 21 QSNMKIGVLGLQG-------------AV--REHVRAIEACGAEAVIVKK---SE----QLEGLDGLVLPGGESTTMRRLI 78 (219)
T ss_dssp CCCCEEEEESCGG-------------GC--HHHHHHHHHTTCEEEEECS---GG----GGTTCSEEEECCCCHHHHHHHH
T ss_pred CCCCEEEEEeCCC-------------Cc--HHHHHHHHHCCCEEEEECC---HH----HHhhCCEEEECCCChHHHHHHh
Confidence 4568999996432 12 2356899999999988863 22 256899999999975110 111
Q ss_pred H--HHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCc
Q 025574 137 A--IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKD 175 (250)
Q Consensus 137 ~--~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~ 175 (250)
. ...++++.+.+.+ +||||||+|||+|+.++||+
T Consensus 79 ~~~~~~~~i~~~~~~~-----~PilGIC~G~QlL~~~~gg~ 114 (219)
T 1q7r_A 79 DRYGLMEPLKQFAAAG-----KPMFGTCAGLILLAKRIVGY 114 (219)
T ss_dssp HHTTCHHHHHHHHHTT-----CCEEEETTHHHHHEEEEESS
T ss_pred hhhHHHHHHHHHHHcC-----CeEEEECHHHHHHHHHhCCC
Confidence 1 1136778888888 99999999999999999986
No 25
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=99.51 E-value=1.3e-14 Score=142.81 Aligned_cols=135 Identities=11% Similarity=0.099 Sum_probs=90.5
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCC--c--cchHHHHHHHHHHHHhCCCCCCc
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD--G--LYYAIVEKVFKKILEKNDAGDHF 156 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~--~--~~~~~~~~li~~~~~~~~~g~~~ 156 (250)
.+++|. .++++++++.|+.+++++++.+.+ +.++|||||+||+... . .+.....++++++++.+ +
T Consensus 454 ~gdsf~-~~l~~~l~~~G~~v~Vv~~d~~~~-----~~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~~~-----i 522 (645)
T 3r75_A 454 AEDHFT-AMIAQQLSSLGLATEVCGVHDAVD-----LARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEG-----K 522 (645)
T ss_dssp SSCTHH-HHHHHHHHHTTCEEEEEETTCCCC-----GGGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHHHHT-----C
T ss_pred CCccHH-HHHHHHHHHCCCEEEEEECCCccc-----ccCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHHHCC-----C
Confidence 345564 468999999999999999876432 4579999999998731 1 22233457888888888 9
Q ss_pred eEEcccchhHHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhhhhhcCCccceeeeeccccc--c--c
Q 025574 157 PLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVRPC--T--I 232 (250)
Q Consensus 157 PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~--~--f 232 (250)
||||||+|||+|+.++||++... ....++...++.+. .+.+|.++++.+ .++.+|++.+. + +
T Consensus 523 PiLGIClG~QlLa~alGG~V~~~-~~~~~G~~~~i~~~-----~~~l~~~~~~~~--------~v~~~h~~~~~~lp~g~ 588 (645)
T 3r75_A 523 PFMAVCLSHQILNAILGIPLVRR-EVPNQGIQVEIDLF-----GQRERVGFYNTY--------VAQTVRDEMDVDGVGTV 588 (645)
T ss_dssp CEEEETHHHHHHHHHTTCCEEEE-EEEEEEEEEEEEET-----TEEEEEEEEEEE--------EEBCSCSEEEETTTEEE
T ss_pred CEEEECHHHHHHHHHhCCEEEcC-CCcccccceEEeee-----cCcceecCCCcE--------EEEEehhhccccCCCCe
Confidence 99999999999999999984322 12222333333321 345666555432 34556666553 2 8
Q ss_pred eEEEEeec
Q 025574 233 NLLSTSVA 240 (250)
Q Consensus 233 ~vlA~s~D 240 (250)
+++|++.|
T Consensus 589 ~v~A~s~d 596 (645)
T 3r75_A 589 AISRDPRT 596 (645)
T ss_dssp EEEECTTT
T ss_pred EEEEEcCC
Confidence 99998833
No 26
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.49 E-value=3.1e-14 Score=137.99 Aligned_cols=156 Identities=12% Similarity=0.080 Sum_probs=93.1
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHH-
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI- 138 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~- 138 (250)
+|.|+|+..... +. .+++++|+++|+++++++.. +. ..++.+||||||||++..+.+...
T Consensus 4 m~~I~Iid~~~g-------------~~-~~~~~~l~~~G~~~~vv~~~---~~--~~l~~~DglILpGgG~~~~~~~~l~ 64 (555)
T 1jvn_A 4 MPVVHVIDVESG-------------NL-QSLTNAIEHLGYEVQLVKSP---KD--FNISGTSRLILPGVGNYGHFVDNLF 64 (555)
T ss_dssp SCEEEEECCSCS-------------CC-HHHHHHHHHTTCEEEEESSG---GG--CCSTTCSCEEEEECSCHHHHHHHHH
T ss_pred CCEEEEEECCCC-------------CH-HHHHHHHHHCCCEEEEECCc---cc--cccccCCEEEECCCCchHhHhhhhh
Confidence 589999964211 11 36888999999999887632 21 236789999999976632221111
Q ss_pred ---HHHHHHHHHHhCCCCCCceEEcccchhHHHHHHh--cCcccccccccCC-------Cceee-eeeeecCCCCCcccc
Q 025574 139 ---VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII--SKDKNILESFNAA-------DQAST-LQFMENTSIEGTVFQ 205 (250)
Q Consensus 139 ---~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~--GG~~~~l~~~~~~-------~~~~p-i~~~~~~~~~s~Lf~ 205 (250)
..++++.+++.+ +|+||||+|||+|+.++ ||....++.++.. ....+ +.|..... .++||+
T Consensus 65 ~~~~~~~i~~~~~~g-----~PiLGIC~G~QlL~~a~~egg~~~~Lg~lgg~v~~~~~~~~~~~~~G~~~v~~-~~~L~~ 138 (555)
T 1jvn_A 65 NRGFEKPIREYIESG-----KPIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIGWNSCIP-SENLFF 138 (555)
T ss_dssp HTTCHHHHHHHHHTT-----CCEEEEEHHHHTTEEEETTBTTCCCCCSEEEEEEECCTTTSCSSEEEEECCCC-CTTCCT
T ss_pred hccHHHHHHHHHHcC-----CcEEEEchhhhhhhhhhhcCCCccccCCCCcEEEECCcCCCCCccccceEEEE-cCHHHh
Confidence 136677777777 99999999999999986 3322222211100 00111 23322111 256777
Q ss_pred cCChhhhhhcCCccceeeeeccccc----------c-ceEEEEeecCCCeEEEee
Q 025574 206 RFPPKLIKKLSTDCLVMQNHHVRPC----------T-INLLSTSVARFNCLKILK 249 (250)
Q Consensus 206 ~lp~~~~~~l~~~~~v~~~Hs~~V~----------~-f~vlA~s~D~~g~~Fvs~ 249 (250)
++++. ..+|++|+|++. + +.++|++.. +...|+++
T Consensus 139 ~l~~~--------~~~~~vHS~~~~~i~~~~~~L~~g~~vlA~s~~-~~D~~i~a 184 (555)
T 1jvn_A 139 GLDPY--------KRYYFVHSFAAILNSEKKKNLENDGWKIAKAKY-GSEEFIAA 184 (555)
T ss_dssp TCCTT--------SCEEEEESEECBCCHHHHHHHHHTTCEEEEEEE-TTEEEEEE
T ss_pred hCCCC--------ceEEEEEEEEEEecccccccCCCCCEEEEEEcC-CCCCeEEE
Confidence 76532 347788888763 2 678888843 21245554
No 27
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.48 E-value=1.6e-13 Score=132.48 Aligned_cols=106 Identities=17% Similarity=0.152 Sum_probs=71.0
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCCh---hhHHHhcccCCEEEECCCCCCCcc
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE---DVLFEKLELVNGVLYTGGWAKDGL 134 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~---~~l~~~l~~~dgvIlpGG~~~~~~ 134 (250)
..++.||++...-. ..+.+.|+. .++.++....|+++.+++++.+. +.+.+.++.+||||||||+.. +.
T Consensus 298 ~~~v~I~ivgkyv~------l~D~y~Sv~-~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L~~~DGIILpGGfGd-~~ 369 (550)
T 1vco_A 298 ERTVKIAIAGKYVK------MPDAYLSLL-EALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFGV-RG 369 (550)
T ss_dssp SEEEEEEEEESCC---------CTTHHHH-HHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCSS-TT
T ss_pred CCceEEcccCCeEE------EEecHHHHH-HHHHHHHHHcCCeEEEEEeCccccccchHHHHHhcCCEEEECCCCCC-cc
Confidence 35688998764321 122344443 33555555667788887765421 234445788999999999873 32
Q ss_pred chHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCccc
Q 025574 135 YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKN 177 (250)
Q Consensus 135 ~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~ 177 (250)
.. ....+++++.+.+ +|+||||+|||+|+.++||++.
T Consensus 370 ~~-g~i~~ir~a~e~~-----iPiLGICLGmQlL~~a~Gg~v~ 406 (550)
T 1vco_A 370 IE-GKVRAAQYARERK-----IPYLGICLGLQIAVIEFARNVA 406 (550)
T ss_dssp HH-HHHHHHHHHHHTT-----CCEEEETHHHHHHHHHHHHHTS
T ss_pred hh-hhHHHHHHHHHCC-----CcEEEECcCHHHHHHHhCcccc
Confidence 22 2236788888888 9999999999999999998743
No 28
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.45 E-value=1.8e-13 Score=122.46 Aligned_cols=99 Identities=18% Similarity=0.184 Sum_probs=66.5
Q ss_pred CCcEEEEeCCC-CCCCCCCCCCCCcchhhHHHHHHHHHHcCC----eEEEeecCCC----------hhhHHH---hcccC
Q 025574 59 YRPVIGIVTHP-GDGASGRLNNATNASYIAASYVKFVESAGA----RVIPLIYNEP----------EDVLFE---KLELV 120 (250)
Q Consensus 59 ~~PvIGI~~~~-~~~~~~~~~~~~~~~~i~~s~v~~le~~G~----~~v~i~~~~~----------~~~l~~---~l~~~ 120 (250)
.++.|+|+... +. ..+|. +++++|+++|+ +++++.++.. .+++.+ .++.+
T Consensus 24 ~~~~Iavv~d~~~~----------~~s~~--si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (289)
T 2v4u_A 24 KICSIALVGKYTKL----------RDCYA--SVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKA 91 (289)
T ss_dssp EEEEEEEEESCSSC----------CGGGH--HHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHHC
T ss_pred CceEEEEEecCcCC----------CccHH--HHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHHhhC
Confidence 34689998432 22 22233 67888988865 4455544321 111111 36789
Q ss_pred CEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcc
Q 025574 121 NGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDK 176 (250)
Q Consensus 121 dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~ 176 (250)
||||||||++. + ......++++.+++.+ +||||||+|||+|+.++||+.
T Consensus 92 dgiil~GG~~~-~-~~~~~~~~i~~~~~~~-----~PilGIC~G~Q~l~~a~Gg~v 140 (289)
T 2v4u_A 92 DGILVPGGFGI-R-GTLGKLQAISWARTKK-----IPFLGVXLGMQLAVIEFARNC 140 (289)
T ss_dssp SEEEECSCCSS-T-THHHHHHHHHHHHHTT-----CCEEEETHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCc-h-hHHHHHHHHHHHHHcC-----CcEEEECccHHHHHHHHhccc
Confidence 99999999873 2 2233347788888888 999999999999999999974
No 29
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.43 E-value=3.7e-13 Score=114.37 Aligned_cols=87 Identities=20% Similarity=0.368 Sum_probs=61.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHH
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI 138 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~ 138 (250)
.+..|+|+..++ ...++.++|+++|+++++++. .++ ++++|+||||||.. ..+..
T Consensus 19 ~~~~I~ii~~~~---------------~~~~~~~~l~~~g~~~~~~~~---~~~----l~~~d~iil~GG~~---~~~~~ 73 (208)
T 2iss_D 19 SHMKIGVLGVQG---------------DVREHVEALHKLGVETLIVKL---PEQ----LDMVDGLILPGGES---TTMIR 73 (208)
T ss_dssp -CCEEEEECSSS---------------CHHHHHHHHHHTTCEEEEECS---GGG----GGGCSEEEECSSCH---HHHHH
T ss_pred CCcEEEEEECCC---------------chHHHHHHHHHCCCEEEEeCC---hHH----HhhCCEEEECCCcH---HHHHh
Confidence 456899994211 124477889999999888752 232 56899999999842 22211
Q ss_pred ------HHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCc
Q 025574 139 ------VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKD 175 (250)
Q Consensus 139 ------~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~ 175 (250)
..++++++.+++ +||||||+|||+|+.++||+
T Consensus 74 ~~~~~~~~~~i~~~~~~g-----~PilGIC~G~QlL~~~~gg~ 111 (208)
T 2iss_D 74 ILKEMDMDEKLVERINNG-----LPVFATCAGVILLAKRIKNY 111 (208)
T ss_dssp HHHHTTCHHHHHHHHHTT-----CCEEEETHHHHHHEEEEC--
T ss_pred hhhhhhHHHHHHHHHHCC-----CeEEEECHHHHHHHHHcCCC
Confidence 136677777777 99999999999999999885
No 30
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.43 E-value=3.3e-13 Score=113.22 Aligned_cols=123 Identities=14% Similarity=0.201 Sum_probs=75.0
Q ss_pred HHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCC-ccchHH--HHHHHHHHHHhCCCCCCceEEcccchhH
Q 025574 90 YVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD-GLYYAI--VEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~-~~~~~~--~~~li~~~~~~~~~g~~~PILGIClG~Q 166 (250)
+.++++++|+++++++. .++ ++.+||||+|||+... ..+... ..++++.+.+++ +|+||||+|||
T Consensus 16 ~~~~l~~~g~~~~~~~~---~~~----l~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~-----~pilgIC~G~q 83 (196)
T 2nv0_A 16 HIHAIEACGAAGLVVKR---PEQ----LNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQG-----KPMFGTCAGLI 83 (196)
T ss_dssp HHHHHHHTTCEEEEECS---GGG----GGGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTT-----CCEEEETHHHH
T ss_pred HHHHHHHCCCEEEEeCC---hHH----HhhCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCC-----CcEEEECHHHH
Confidence 56789999999888753 222 5679999999997410 011111 136777887888 99999999999
Q ss_pred HHHHHhcCcccccccccCCCceeeeeeeec--CCC-----CCcccccCChhhhhhcCCccceeeeecccccc----ceEE
Q 025574 167 LLTMIISKDKNILESFNAADQASTLQFMEN--TSI-----EGTVFQRFPPKLIKKLSTDCLVMQNHHVRPCT----INLL 235 (250)
Q Consensus 167 lL~~~~GG~~~~l~~~~~~~~~~pi~~~~~--~~~-----~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~V~~----f~vl 235 (250)
+|+.++||+. .... +..+...+.. ... .+..+.+ ++++..++++|++.+.. ++++
T Consensus 84 ~l~~~~gg~~--~~~l----g~~~~~~~~~~~g~~~~~~~~~~~~~~--------~g~~~~~~~~h~~~v~~~~~~~~v~ 149 (196)
T 2nv0_A 84 ILAKEIAGSD--NPHL----GLLNVVVERNSFGRQVDSFEADLTIKG--------LDEPFTGVFIRAPHILEAGENVEVL 149 (196)
T ss_dssp HHSBCCC------CCC----CCSCEEEECCCSCTTTSEEEEEECCTT--------CSSCEEEEEESCCEEEEECTTCEEE
T ss_pred HHHHHhcCCC--CCcc----cCCceeEeccCCCcccccccCCccccc--------CCCceEEEEEecceecccCCCcEEE
Confidence 9999999862 1111 1112211110 000 0112222 33445678899998852 8999
Q ss_pred EEe
Q 025574 236 STS 238 (250)
Q Consensus 236 A~s 238 (250)
|++
T Consensus 150 a~~ 152 (196)
T 2nv0_A 150 SEH 152 (196)
T ss_dssp EEE
T ss_pred EEE
Confidence 988
No 31
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.35 E-value=2.2e-13 Score=117.02 Aligned_cols=90 Identities=18% Similarity=0.312 Sum_probs=65.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHc---CCeEEEeecCCChhhHHHhcccCCEEEECCCCCC-Ccc
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA---GARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK-DGL 134 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~---G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~-~~~ 134 (250)
.+++|||+..++. | .+|+++|+++ |+++++++. .+. ++.+||||||||.+. ...
T Consensus 2 ~~~~I~Il~~~~~-------------~--~~~~~~l~~~~~~G~~~~~~~~---~~~----l~~~dglil~GG~~~~~~~ 59 (227)
T 2abw_A 2 SEITIGVLSLQGD-------------F--EPHINHFIKLQIPSLNIIQVRN---VHD----LGLCDGLVIPGGESTTVRR 59 (227)
T ss_dssp CCEEEEEECTTSC-------------C--HHHHHHHHTTCCTTEEEEEECS---HHH----HHTCSEEEECCSCHHHHHH
T ss_pred CCcEEEEEeCCCC-------------c--HHHHHHHHHhccCCeEEEEEcC---ccc----cccCCEEEECCCcHHHHHH
Confidence 3588999986521 1 3588899999 998887752 332 567999999999741 111
Q ss_pred chH----HHHHHHHHHHHh-CCCCCCceEEcccchhHHHHHHhcCc
Q 025574 135 YYA----IVEKVFKKILEK-NDAGDHFPLYAHCLGFELLTMIISKD 175 (250)
Q Consensus 135 ~~~----~~~~li~~~~~~-~~~g~~~PILGIClG~QlL~~~~GG~ 175 (250)
+.. ...++++.+.+. + +||||||+|||+|+.++||+
T Consensus 60 ~~~~d~~~~~~~i~~~~~~~g-----~PilGIC~G~QlL~~~~gg~ 100 (227)
T 2abw_A 60 CCAYENDTLYNALVHFIHVLK-----KPIWGTCAGCILLSKNVENI 100 (227)
T ss_dssp HTTHHHHHHHHHHHHHHHTSC-----CCEEEETHHHHHTEEEEECC
T ss_pred HHHHhHHHHHHHHHHHHHhcC-----CEEEEECHHHHHHHHHhcCC
Confidence 111 124667777777 7 99999999999999999886
No 32
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.34 E-value=3e-12 Score=123.48 Aligned_cols=99 Identities=18% Similarity=0.244 Sum_probs=67.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCC----eEEEeecCCChhhHH----HhcccCCEEEECCCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA----RVIPLIYNEPEDVLF----EKLELVNGVLYTGGWA 130 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~----~~v~i~~~~~~~~l~----~~l~~~dgvIlpGG~~ 130 (250)
.++.||++...-. ..+.| .|++++|+.+|+ ++++++++ .+++. +.+..+||||||||+.
T Consensus 288 ~~v~i~~vGkyv~---------l~D~y--~Si~~aL~~~G~~~~~~V~i~~~d--~e~i~~~~~~~l~~~DGIilsGGpg 354 (545)
T 1s1m_A 288 SEVTIGMVGKYIE---------LPDAY--KSVIEALKHGGLKNRVSVNIKLID--SQDVETRGVEILKGLDAILVPGGFG 354 (545)
T ss_dssp EEEEEEEEESSCS---------SGGGG--HHHHHHHHHHHHHHTEEEEEEEEE--HHHHHHHCTTTTTTCSEEEECCCCS
T ss_pred CeEEeCCcCCeEE---------EEEHH--HHHHHHHHHhCcccCCeEEEccCC--HHHhhhhhhhhhhcCCEEEECCCCC
Confidence 3568898653211 22333 567777877775 45565554 23332 3367899999999987
Q ss_pred CCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCccc
Q 025574 131 KDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKN 177 (250)
Q Consensus 131 ~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~ 177 (250)
. +.. .....+++++.+.+ +|+||||+|||+|+.++||++.
T Consensus 355 ~-~~~-~g~~~~i~~a~~~~-----~PiLGIClG~Qll~va~Gg~v~ 394 (545)
T 1s1m_A 355 Y-RGV-EGMITTARFARENN-----IPYLGICLGMQVALIDYARHVA 394 (545)
T ss_dssp S-TTH-HHHHHHHHHHHHTT-----CCEEEETHHHHHHHHHHHHHHH
T ss_pred C-ccc-hhhHHHHHHHHHCC-----CcEEEECChHHHHHHHhCCcee
Confidence 3 322 22336788888878 9999999999999999999853
No 33
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.31 E-value=7.2e-12 Score=119.76 Aligned_cols=100 Identities=26% Similarity=0.295 Sum_probs=68.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHc----CCeEEEeecCCCh---hhH--HHhcccCCEEEECCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA----GARVIPLIYNEPE---DVL--FEKLELVNGVLYTGGW 129 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~----G~~~v~i~~~~~~---~~l--~~~l~~~dgvIlpGG~ 129 (250)
....||++.---. ..++|. |+.++|+.+ +.++.+.+.+... +.. .+.++.+||||+|||+
T Consensus 292 ~~v~IalVGKY~~---------l~DaY~--Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpGG~ 360 (535)
T 3nva_A 292 KTINIALVGKYTK---------LKDSYI--SIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGF 360 (535)
T ss_dssp CEEEEEEEESCTT---------SGGGGH--HHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECCCC
T ss_pred CeeEEEEEecCcC---------CchhHH--HHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECCCC
Confidence 4467999875422 345563 455666554 5677666554320 000 2357889999999998
Q ss_pred CCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcc
Q 025574 130 AKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDK 176 (250)
Q Consensus 130 ~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~ 176 (250)
.. +.+. ....+++++.+.+ +|+||||+|||+|+.++||+.
T Consensus 361 G~-~~~~-g~i~~ir~a~~~~-----~PiLGIClG~Qll~va~Gg~v 400 (535)
T 3nva_A 361 GS-RGAE-GKIKAIKYAREHN-----IPFLGICFGFQLSIVEFARDV 400 (535)
T ss_dssp SS-TTHH-HHHHHHHHHHHHT-----CCEEEETHHHHHHHHHHHHTT
T ss_pred CC-ccHH-HHHHHHHHHHHcC-----CcEEEECcchhHHHHHhhccc
Confidence 63 2222 2336788888888 999999999999999999984
No 34
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=99.23 E-value=1.8e-10 Score=103.60 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=73.4
Q ss_pred cccCCEEEECCCCCC-----CccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcccccccccCCCceeee
Q 025574 117 LELVNGVLYTGGWAK-----DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTL 191 (250)
Q Consensus 117 l~~~dgvIlpGG~~~-----~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi 191 (250)
.+++||+|++|++.. +-+|.....++++++.+.+ +|+||||+|+|++..++||... ......+.+..++
T Consensus 97 ~~~~DglIITGap~~~~~~ed~~yw~el~~li~~~~~~~-----~~~lgIC~GaQ~~l~~~~G~~k-~~~~~K~~Gv~~~ 170 (301)
T 2vdj_A 97 NEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNV-----TSTLHICWGAQAGLYHHYGVQK-YPLKEKMFGVFEH 170 (301)
T ss_dssp TSCEEEEEECCCTTTTSCGGGSTTHHHHHHHHHHHHHHE-----EEEEEETHHHHHHHHHHHCCCC-EEEEEEEEEEEEE
T ss_pred ccccCEEEECCCCCcCCCcccCchHHHHHHHHHHHHHcC-----CcEEEEcHHHHHHHHHhCCCcc-ccCCCCEEEEEEE
Confidence 467999999999952 2345566679999999988 9999999999998888777421 1112233444555
Q ss_pred eeeecCCCCCcccccCChhhhhhcCCccceeeeec-----ccccc---ceEEEEeecCCC
Q 025574 192 QFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHH-----VRPCT---INLLSTSVARFN 243 (250)
Q Consensus 192 ~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs-----~~V~~---f~vlA~s~D~~g 243 (250)
..+. . .++||+++++.+. +.++|+ +.|.. .+++|.| +..|
T Consensus 171 ~~~~--~-~~pL~~g~~~~f~--------~phsr~~~~~~~~v~~~pga~vLA~S-~~~~ 218 (301)
T 2vdj_A 171 EVRE--Q-HVKLLQGFDELFF--------AVHSRHTEVRESDIREVKELTLLANS-EEAG 218 (301)
T ss_dssp EECC--S-SCGGGTTCCSEEE--------EEEEEEEECCHHHHHTCTTEEEEEEE-TTTE
T ss_pred EecC--C-CCccccCCCCceE--------eeeEeccCcCHHHccCCCCCEEEEeC-CCCc
Confidence 4432 2 6789998876542 444433 33442 8999998 4344
No 35
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=99.15 E-value=3.3e-10 Score=102.41 Aligned_cols=108 Identities=8% Similarity=0.069 Sum_probs=72.9
Q ss_pred cccCCEEEECCCCCC-----CccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcCcccccccccCCCceeee
Q 025574 117 LELVNGVLYTGGWAK-----DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTL 191 (250)
Q Consensus 117 l~~~dgvIlpGG~~~-----~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pi 191 (250)
.+++||+|++|++.. +-+|.....++++++.+.+ +|+||||+|+|++..++||... ......+.+..++
T Consensus 109 ~~~~DglIITGsP~~~~~~ed~~yw~el~~li~~~~~~~-----~p~LGIC~GaQ~~l~~~~G~~k-~~~~~K~~Gv~~~ 182 (312)
T 2h2w_A 109 DRKFDGFIITGAPVELLPFEEVDYWEELTEIMEWSRHNV-----YSTMFICWAAQAGLYYFYGIPK-YELPQKLSGVYKH 182 (312)
T ss_dssp TCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHE-----EEEEEETHHHHHHHHHHHCCCC-EEEEEEEEEEEEE
T ss_pred ccCcCEEEECCCCCCCCCCccCchHHHHHHHHHHHHHcC-----CcEEEECHHHHHHHHHhCCCcc-ccCCCCEEEEEEE
Confidence 367999999999952 2345566679999999988 9999999999998888877421 1122233445555
Q ss_pred eeeecCCCCCcccccCChhhhhhcCCccceeeeeccc-----cc--c-ceEEEEeecCCC
Q 025574 192 QFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHVR-----PC--T-INLLSTSVARFN 243 (250)
Q Consensus 192 ~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~v~~~Hs~~-----V~--~-f~vlA~s~D~~g 243 (250)
..+. .++||+++++.+ .+.++|+.. +. + .+++|.| +..|
T Consensus 183 ~~~~----~~pL~~g~~~~f--------~vphsr~~e~~~~~v~~~pga~vLA~S-~~~~ 229 (312)
T 2h2w_A 183 RVAK----DSVLFRGHDDFF--------WAPHSRYTEVKKEDIDKVPELEILAES-DEAG 229 (312)
T ss_dssp EESS----CCGGGTTCCSEE--------EEEEEEEEECCHHHHTTCC-CEEEEEE-TTTE
T ss_pred EEcC----CCccccCCCCce--------EeeEEeccccCHHHccCCCCCEEEEcC-CCCc
Confidence 5432 577998887654 245544322 33 2 8999998 4344
No 36
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=98.88 E-value=2.8e-09 Score=111.60 Aligned_cols=90 Identities=14% Similarity=0.261 Sum_probs=64.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecC---CChhhHHHhcccCCEEEECCCCCCCccc
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN---EPEDVLFEKLELVNGVLYTGGWAKDGLY 135 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~---~~~~~l~~~l~~~dgvIlpGG~~~~~~~ 135 (250)
.||.|+|+..++.++ ..++.++++++|+.++.++.. ... +.++.+|+|+||||.++.. +
T Consensus 1046 ~~pkVaIi~~~G~N~-------------~~~~~~A~~~aG~~~~~v~~~dl~~~~----~~l~~~d~lvlPGGfSygD-~ 1107 (1303)
T 3ugj_A 1046 ARPKVAVLREQGVNS-------------HVEMAAAFHRAGFDAIDVHMSDLLGGR----IGLGNFHALVACGGFSYGD-V 1107 (1303)
T ss_dssp CCCEEEEEECTTCCC-------------HHHHHHHHHHTTCEEEEEEHHHHHTTS----CCGGGCSEEEECCSCGGGG-T
T ss_pred CCCEEEEEecCCcCC-------------HHHHHHHHHHhCCceEEEeecccccCc----ccHhhCCEEEECCCCcchh-h
Confidence 589999999998755 356788999999999887642 111 2367899999999987422 1
Q ss_pred hH-------------HHHHHHHHHH-HhCCCCCCceEEcccchhHHHHHH
Q 025574 136 YA-------------IVEKVFKKIL-EKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 136 ~~-------------~~~~li~~~~-~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
.+ ...+.++.++ +++ +|+||||+|||+|+..
T Consensus 1108 l~~g~~~a~~~l~~~~l~~~l~~~~~~~g-----~pvLGICnG~QlL~e~ 1152 (1303)
T 3ugj_A 1108 LGAGEGWAKSILFNHRVRDEFETFFHRPQ-----TLALGVCNGCQMMSNL 1152 (1303)
T ss_dssp TSTTHHHHHHHHTSHHHHHHHHHHHHSSS-----CEEEEETHHHHHHHTT
T ss_pred hccchhHHHHHHhchhHHHHHHHHHHhCC-----CcEEEECHHHHHHHHh
Confidence 11 1123344433 345 9999999999999986
No 37
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.62 E-value=5.3e-08 Score=82.90 Aligned_cols=97 Identities=15% Similarity=0.091 Sum_probs=66.1
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecC-CChhhHHHhcccCCEEEECCCCCCCccchHH
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN-EPEDVLFEKLELVNGVLYTGGWAKDGLYYAI 138 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~-~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~ 138 (250)
.|.|+++..-... ..++.|+ +++.++++++|+++..+... .+.++..+.++++|+|++|||... .....
T Consensus 27 ~~~i~~Ip~As~~-------~~~~~~~-~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~~--~l~~~ 96 (206)
T 3l4e_A 27 GKTVTFIPTASTV-------EEVTFYV-EAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNTF--FLLQE 96 (206)
T ss_dssp TCEEEEECGGGGG-------CSCCHHH-HHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCHH--HHHHH
T ss_pred CCEEEEECCCCCC-------CCHHHHH-HHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCHH--HHHHH
Confidence 4888887643210 1234565 56899999999988877432 234444456788999999997652 11111
Q ss_pred -----HHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 139 -----VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 139 -----~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
..+.++.+++++ +|++|||.|+|+++..
T Consensus 97 L~~~gl~~~l~~~~~~G-----~p~~G~sAGa~~l~~~ 129 (206)
T 3l4e_A 97 LKRTGADKLILEEIAAG-----KLYIGESAGAVITSPN 129 (206)
T ss_dssp HHHHTHHHHHHHHHHTT-----CEEEEETHHHHTTSSB
T ss_pred HHHCChHHHHHHHHHcC-----CeEEEECHHHHHhccc
Confidence 235667776777 9999999999999863
No 38
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=98.60 E-value=7.2e-08 Score=83.18 Aligned_cols=95 Identities=12% Similarity=0.065 Sum_probs=64.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHH
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI 138 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~ 138 (250)
.++.|+|+..-... .....|+ +++.++++++|++++.+....+. .+.++++|+|++|||.. ......
T Consensus 30 ~~~~i~iI~~a~~~-------~~~~~~~-~~~~~al~~lG~~~~~v~~~~d~---~~~l~~ad~I~lpGG~~--~~~~~~ 96 (229)
T 1fy2_A 30 GRRSAVFIPFAGVT-------QTWDEYT-DKTAEVLAPLGVNVTGIHRVADP---LAAIEKAEIIIVGGGNT--FQLLKE 96 (229)
T ss_dssp TCCEEEEECTTCCS-------SCHHHHH-HHHHHHHGGGTCEEEETTSSSCH---HHHHHHCSEEEECCSCH--HHHHHH
T ss_pred CCCeEEEEECCCCC-------CCHHHHH-HHHHHHHHHCCCEEEEEeccccH---HHHHhcCCEEEECCCcH--HHHHHH
Confidence 46889998644310 1234554 57889999999988777533222 23467899999999754 112221
Q ss_pred -----HHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 139 -----VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 139 -----~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
..+.++.+++++ +|++|||.|||+|+..
T Consensus 97 l~~~gl~~~l~~~~~~G-----~p~~G~sAG~~~l~~~ 129 (229)
T 1fy2_A 97 SRERGLLAPMADRVKRG-----ALYIGWSAGANLACPT 129 (229)
T ss_dssp HHHTTCHHHHHHHHHTT-----CEEEEETHHHHHTSSB
T ss_pred HHHCChHHHHHHHHHcC-----CEEEEECHHHHhhccc
Confidence 135666666777 9999999999999874
No 39
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=98.06 E-value=2.3e-05 Score=65.22 Aligned_cols=97 Identities=19% Similarity=0.206 Sum_probs=62.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCCh---------h-----hHHH-hcccCCEE
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE---------D-----VLFE-KLELVNGV 123 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~---------~-----~l~~-~l~~~dgv 123 (250)
+...|+|+..++-. ... .....+.|+++|+++..+.....+ . .+.+ ..+.+|+|
T Consensus 22 ~~~kV~ill~~g~~---------~~e--~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~l 90 (193)
T 1oi4_A 22 LSKKIAVLITDEFE---------DSE--FTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDAL 90 (193)
T ss_dssp CCCEEEEECCTTBC---------THH--HHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEE
T ss_pred cCCEEEEEECCCCC---------HHH--HHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEE
Confidence 44679999876431 111 234567899999988877654321 0 0111 12468999
Q ss_pred EECCCCCCCcc-chHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 124 LYTGGWAKDGL-YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 124 IlpGG~~~~~~-~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
|+|||...... ......++++.+.+++ +||.|||.|.|+|+.+
T Consensus 91 ivpGG~~~~~l~~~~~l~~~l~~~~~~g-----k~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 91 LLPGGHSPDYLRGDNRFVTFTRDFVNSG-----KPVFAICHGPQLLISA 134 (193)
T ss_dssp EECCBTHHHHHTTSHHHHHHHHHHHHTT-----CCEEEETTTHHHHHHH
T ss_pred EECCCcCHHHhhhCHHHHHHHHHHHHcC-----CEEEEECHHHHHHHHC
Confidence 99999542100 1122347778777777 9999999999999986
No 40
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=97.49 E-value=0.00033 Score=56.35 Aligned_cols=95 Identities=13% Similarity=0.164 Sum_probs=60.1
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCCh------------hhHHHh-cccCCEEEECC
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE------------DVLFEK-LELVNGVLYTG 127 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~------------~~l~~~-l~~~dgvIlpG 127 (250)
..|+|+..++- .... .....+.|+++|+++..+..+... ..+.+. ...+|.|++||
T Consensus 3 ~ki~il~~~g~---------~~~e--~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpG 71 (168)
T 3l18_A 3 MKVLFLSADGF---------EDLE--LIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPG 71 (168)
T ss_dssp CEEEEECCTTB---------CHHH--HHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECC
T ss_pred cEEEEEeCCCc---------cHHH--HHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECC
Confidence 46888887642 1112 223567889999988877543200 001111 23589999999
Q ss_pred CCCCCc-cchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 128 GWAKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 128 G~~~~~-~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
|..... .......++++.+.+++ +||.+||.|.++|+.+
T Consensus 72 G~~~~~~~~~~~l~~~l~~~~~~~-----k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 72 GKAPEIVRLNEKAVMITRRMFEDD-----KPVASICHGPQILISA 111 (168)
T ss_dssp BSHHHHHTTCHHHHHHHHHHHHTT-----CCEEEETTTHHHHHHT
T ss_pred CcCHHHhccCHHHHHHHHHHHHCC-----CEEEEECHhHHHHHHC
Confidence 974210 01122347778887877 9999999999999875
No 41
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=97.44 E-value=0.00027 Score=58.59 Aligned_cols=97 Identities=15% Similarity=0.087 Sum_probs=61.9
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC-------------hhhHHHh--cccCCEE
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-------------EDVLFEK--LELVNGV 123 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~-------------~~~l~~~--l~~~dgv 123 (250)
+...|+|+..++-. ...+ ...++.|+++|+++..+..+.. ...+.+. ...+|.|
T Consensus 2 m~~~v~ill~~g~~---------~~e~--~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~l 70 (197)
T 2rk3_A 2 ASKRALVILAKGAE---------EMET--VIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVV 70 (197)
T ss_dssp CCCEEEEEECTTCC---------HHHH--HHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEE
T ss_pred CCCEEEEEECCCCc---------HHHH--HHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEE
Confidence 34578988876431 1222 2356789999998887764321 1122221 2678999
Q ss_pred EECCCCCCCccc--hHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 124 LYTGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 124 IlpGG~~~~~~~--~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
++|||....... .....++++.+.+++ +||.+||.|-++|+.+
T Consensus 71 ivpGG~~~~~~l~~~~~~~~~l~~~~~~g-----k~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 71 VLPGGNLGAQNLSESAAVKEILKEQENRK-----GLIATICAGPTALLAH 115 (197)
T ss_dssp EECCCHHHHHHHHHCHHHHHHHHHHHHTT-----CEEEEETTTHHHHHHT
T ss_pred EECCCchhHHHhhhCHHHHHHHHHHHHcC-----CEEEEECHHHHHHHHC
Confidence 999996310011 112346777777777 9999999999999976
No 42
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=97.38 E-value=0.00026 Score=58.45 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=61.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC------------hhhHHH-hcccCCEEEE
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP------------EDVLFE-KLELVNGVLY 125 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~------------~~~l~~-~l~~~dgvIl 125 (250)
.+.+|-|+...+- +...++ .-++.|+++|+++.++..... +..+.+ ..+++|+|++
T Consensus 7 t~~~v~il~~~gF---------e~~E~~--~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~lii 75 (177)
T 4hcj_A 7 TNNILYVMSGQNF---------QDEEYF--ESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVF 75 (177)
T ss_dssp CCEEEEECCSEEE---------CHHHHH--HHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEE
T ss_pred CCCEEEEECCCCc---------cHHHHH--HHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEE
Confidence 4567788764421 122332 245789999999988764320 011111 1356899999
Q ss_pred CCCCCCCccc-hHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 126 TGGWAKDGLY-YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 126 pGG~~~~~~~-~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
|||....... .....++++.+.+++ +||.+||.|-++|+.+
T Consensus 76 PGG~g~~~l~~~~~~~~~l~~~~~~~-----k~iaaIC~g~~~La~a 117 (177)
T 4hcj_A 76 VGGIGCITLWDDWRTQGLAKLFLDNQ-----KIVAGIGSGVVIMANA 117 (177)
T ss_dssp CCSGGGGGGTTCHHHHHHHHHHHHTT-----CEEEEETTHHHHHHHT
T ss_pred CCCccHHHHhhCHHHHHHHHHHHHhC-----CEEEEecccHHHHHHC
Confidence 9997521111 123347788888888 9999999999999875
No 43
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=97.37 E-value=0.00063 Score=55.78 Aligned_cols=97 Identities=21% Similarity=0.211 Sum_probs=59.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC-----------------hhhHHHh-cccC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-----------------EDVLFEK-LELV 120 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~-----------------~~~l~~~-l~~~ 120 (250)
....|+|+..++- ....+ ....+.|+++|+++..+..+.. ...+.+. ...+
T Consensus 8 ~~~~v~il~~~g~---------~~~e~--~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~ 76 (190)
T 2vrn_A 8 TGKKIAILAADGV---------EEIEL--TSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDY 76 (190)
T ss_dssp TTCEEEEECCTTC---------BHHHH--HHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGC
T ss_pred CCCEEEEEeCCCC---------CHHHH--HHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhC
Confidence 3457999886642 11122 2346788899988876654321 0011111 1468
Q ss_pred CEEEECCCC-CCCc-cchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 121 NGVLYTGGW-AKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 121 dgvIlpGG~-~~~~-~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
|.||+|||. .... .......++++.+.+++ +||.+||.|.++|+.+
T Consensus 77 D~livpGG~~~~~~~~~~~~l~~~l~~~~~~g-----k~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 77 DGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAG-----KPIAAICHGPWSLSET 124 (190)
T ss_dssp SEEEECCCTHHHHHHTTCHHHHHHHHHHHHTT-----CCEEEC-CTTHHHHHT
T ss_pred CEEEECCCchhHHHHhhCHHHHHHHHHHHHcC-----CEEEEECHhHHHHHhC
Confidence 999999996 2110 11123447778887777 9999999999999985
No 44
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=97.26 E-value=0.00087 Score=57.14 Aligned_cols=53 Identities=13% Similarity=0.226 Sum_probs=39.4
Q ss_pred ccCCEEEECCCCCCC---cc---------chHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhc-Cc
Q 025574 118 ELVNGVLYTGGWAKD---GL---------YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIIS-KD 175 (250)
Q Consensus 118 ~~~dgvIlpGG~~~~---~~---------~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~G-G~ 175 (250)
+++|.|++|||.... .. ......++++.+.+++ +||.+||.|-++|+.++. |+
T Consensus 89 ~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g-----k~vaaIC~G~~~La~aL~~Gr 154 (232)
T 1vhq_A 89 AELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAG-----KPLGFMCIAPAMLPKIFDFPL 154 (232)
T ss_dssp GGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTT-----CCEEEETTGGGGHHHHCSSCC
T ss_pred ccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcC-----CEEEEECHHHHHHHHHhcCCC
Confidence 468999999996420 01 0223457788888888 999999999999999866 64
No 45
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=97.16 E-value=0.00096 Score=54.90 Aligned_cols=98 Identities=14% Similarity=0.167 Sum_probs=61.1
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC-Ch------------hhHHHh-cccCCEE
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-PE------------DVLFEK-LELVNGV 123 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~-~~------------~~l~~~-l~~~dgv 123 (250)
+|...|+|+..++- ....+ ...++.|+++|+++..+..+. .+ ..+.+. ...+|.|
T Consensus 3 ~m~kkv~ill~~g~---------~~~e~--~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~l 71 (190)
T 4e08_A 3 HMSKSALVILAPGA---------EEMEF--IIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVV 71 (190)
T ss_dssp -CCCEEEEEECTTC---------CHHHH--HHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEE
T ss_pred CCCcEEEEEECCCc---------hHHHH--HHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEE
Confidence 45567888876642 11222 235678999999988876543 10 011221 2358999
Q ss_pred EECCCCCCCccc--hHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 124 LYTGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 124 IlpGG~~~~~~~--~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
++|||....... .....++++.+.+++ +||.+||-|.++|+.+
T Consensus 72 ivpGG~~~~~~~~~~~~~~~~l~~~~~~~-----k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 72 VLPGGLGGSNAMGESSLVGDLLRSQESGG-----GLIAAICAAPTVLAKH 116 (190)
T ss_dssp EECCCHHHHHHHHHCHHHHHHHHHHHHTT-----CEEEEETTTHHHHHHT
T ss_pred EECCCChHHHHhhhCHHHHHHHHHHHHCC-----CEEEEECHHHHHHHHC
Confidence 999994210111 112346777777777 9999999999999875
No 46
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=97.14 E-value=0.0022 Score=53.94 Aligned_cols=96 Identities=16% Similarity=0.047 Sum_probs=60.0
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHH--------HcCCeEEEeecCCC------------hhhHHHh-cc
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVE--------SAGARVIPLIYNEP------------EDVLFEK-LE 118 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le--------~~G~~~v~i~~~~~------------~~~l~~~-l~ 118 (250)
.+.|+|+..++-.. ..+ ...++.|+ +.|+++..+..+.. ...+.+. .+
T Consensus 5 m~~v~ill~~g~~~---------~e~--~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~ 73 (212)
T 3efe_A 5 TKKAFLYVFNTMSD---------WEY--GYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLE 73 (212)
T ss_dssp CCCEEEEECTTCCT---------TTT--HHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCC
T ss_pred ccEEEEEECCCccH---------HHH--HHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCcc
Confidence 35688888775322 111 22445666 56777777654321 0011111 23
Q ss_pred cCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 119 LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 119 ~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
.+|.|++|||............++++.+.+++ +||.+||-|-.+|+.+
T Consensus 74 ~~D~livpGG~~~~~~~~~~l~~~l~~~~~~g-----k~iaaiC~G~~~La~a 121 (212)
T 3efe_A 74 SKDLLILPGGTTWSEEIHQPILERIGQALKIG-----TIVAAICGATDALANM 121 (212)
T ss_dssp TTCEEEECCCSCTTSGGGHHHHHHHHHHHHHT-----CEEEEETHHHHHHHHT
T ss_pred CCCEEEECCCCccccccCHHHHHHHHHHHHCC-----CEEEEEcHHHHHHHHc
Confidence 78999999997632222223457788888888 9999999999999875
No 47
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=97.08 E-value=0.00069 Score=56.62 Aligned_cols=95 Identities=13% Similarity=0.138 Sum_probs=60.1
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC---------------hhhHHHh-cccCCEEE
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP---------------EDVLFEK-LELVNGVL 124 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~---------------~~~l~~~-l~~~dgvI 124 (250)
..|+|+..++- ....+ ...++.|+++|+++..+..+.. ...+.+. ...+|.||
T Consensus 3 ~kV~ill~~g~---------~~~e~--~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~li 71 (205)
T 2ab0_A 3 ASALVCLAPGS---------EETEA--VTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIV 71 (205)
T ss_dssp CEEEEEECTTC---------CHHHH--HHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEE
T ss_pred cEEEEEEcCCC---------cHHHH--HHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEE
Confidence 46888876642 11122 2346789999998887754321 1112221 25789999
Q ss_pred ECCCCC-CCc-cchHHHHHHHHHHHHhCCCCCCceEEcccchh-HHHHHH
Q 025574 125 YTGGWA-KDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF-ELLTMI 171 (250)
Q Consensus 125 lpGG~~-~~~-~~~~~~~~li~~~~~~~~~g~~~PILGIClG~-QlL~~~ 171 (250)
+|||.. ... .......++++.+.+++ +||.+||.|. ++|+.+
T Consensus 72 vpGG~~~~~~l~~~~~l~~~l~~~~~~g-----k~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 72 LPGGIKGAECFRDSTLLVETVKQFHRSG-----RIVAAICAAPATVLVPH 116 (205)
T ss_dssp ECCCHHHHHHHHHCHHHHHHHHHHHHTT-----CEEEEETHHHHHHTTTT
T ss_pred ECCCcccHHHhccCHHHHHHHHHHHHcC-----CEEEEECHhHHHHHHHC
Confidence 999953 110 01122346777777777 9999999999 999874
No 48
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=96.94 E-value=0.0025 Score=53.54 Aligned_cols=95 Identities=12% Similarity=0.031 Sum_probs=60.1
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHc-CCeEEEeecCCC-----------hhhHHHhcccCCEEEECC
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIYNEP-----------EDVLFEKLELVNGVLYTG 127 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~-G~~~v~i~~~~~-----------~~~l~~~l~~~dgvIlpG 127 (250)
...|+|+..++-.. .... ...+.++++ |+++..+..+.. ...+.+..+.+|.|++||
T Consensus 3 m~kV~ill~~g~~~---------~E~~--~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~~~~~D~livpG 71 (206)
T 3f5d_A 3 LKKALFLILDQYAD---------WEGV--YLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLEPANFNLLVMIG 71 (206)
T ss_dssp CEEEEEECCSSBCT---------TTSH--HHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSSCSCCSEEEECC
T ss_pred ccEEEEEEcCCCcH---------HHHH--HHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhCCcCCCEEEEcC
Confidence 35788988775321 1111 245577776 777776654321 001112223689999999
Q ss_pred CCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 128 GWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 128 G~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
|..... ......++++.+.+++ +||.+||-|-++|+.+
T Consensus 72 G~~~~~-~~~~l~~~l~~~~~~g-----k~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 72 GDSWSN-DNKKLLHFVKTAFQKN-----IPIAAICGAVDFLAKN 109 (206)
T ss_dssp BSCCCC-CCHHHHHHHHHHHHTT-----CCEEEETHHHHHHHHT
T ss_pred CCChhh-cCHHHHHHHHHHHHcC-----CEEEEECHHHHHHHHc
Confidence 975322 2233447778877777 9999999999999985
No 49
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=96.92 E-value=0.001 Score=54.67 Aligned_cols=94 Identities=11% Similarity=0.024 Sum_probs=57.7
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHH-cCCeEEEeecCCC------------hhhHHHh-cccCCEEEECC
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVES-AGARVIPLIYNEP------------EDVLFEK-LELVNGVLYTG 127 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~-~G~~~v~i~~~~~------------~~~l~~~-l~~~dgvIlpG 127 (250)
.|+|+..++-.. ..+. ...+.+++ .|+++..+..+.. ...+.+. .+.+|.|++||
T Consensus 3 ~i~ill~~g~~~---------~e~~--~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpG 71 (188)
T 2fex_A 3 RIAIALAQDFAD---------WEPA--LLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPG 71 (188)
T ss_dssp EEEEECCTTBCT---------TSSH--HHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECC
T ss_pred EEEEEeCCCchH---------HHHH--HHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECC
Confidence 588887664311 1121 24567777 8888877754321 0111111 12689999999
Q ss_pred CCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 128 GWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 128 G~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
|.............+++.+.+++ +||.+||-|.++|+.+
T Consensus 72 G~~~~~~~~~~l~~~l~~~~~~~-----k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 72 GLSWEKGTAADLGGLVKRFRDRD-----RLVAGICAAASALGGT 110 (188)
T ss_dssp BSHHHHTCCCCCHHHHHHHHHTT-----CEEEEETHHHHHHHHT
T ss_pred CCcccccccHHHHHHHHHHHHCC-----CEEEEECHHHHHHHHC
Confidence 96411111112336778887777 9999999999999975
No 50
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=96.89 E-value=0.0028 Score=62.96 Aligned_cols=97 Identities=11% Similarity=0.034 Sum_probs=63.0
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC------------hhhHHH-hcccCCEEE
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP------------EDVLFE-KLELVNGVL 124 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~------------~~~l~~-~l~~~dgvI 124 (250)
.....|||+...+- .... ....++.|+++|+.+.++..... ...+.+ ....+|+||
T Consensus 598 i~grKVaILlaDGf---------Ee~E--l~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALV 666 (753)
T 3ttv_A 598 VKGRVVAILLNDEV---------RSAD--LLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVI 666 (753)
T ss_dssp CTTCEEEEECCTTC---------CHHH--HHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEE
T ss_pred CCCCEEEEEecCCC---------CHHH--HHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEE
Confidence 34457899886643 1122 23467899999999988764321 001111 112479999
Q ss_pred ECCCCCCCccc-hHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 125 YTGGWAKDGLY-YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 125 lpGG~~~~~~~-~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
|||| ..+... ......+++.+.+++ +||-+||-|-++|..+
T Consensus 667 VPGG-g~~~Lr~d~~vl~~Vre~~~~g-----KpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 667 VPCG-NIADIADNGDANYYLMEAYKHL-----KPIALAGDARKFKATI 708 (753)
T ss_dssp ECCS-CGGGTTTCHHHHHHHHHHHHTT-----CCEEEEGGGGGGGGGG
T ss_pred ECCC-ChHHhhhCHHHHHHHHHHHhcC-----CeEEEECchHHHHHHc
Confidence 9999 311111 123457888888888 9999999999999865
No 51
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=96.89 E-value=0.0045 Score=53.48 Aligned_cols=50 Identities=12% Similarity=0.315 Sum_probs=36.9
Q ss_pred ccCCEEEECCCCCCC---c----------cchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHh
Q 025574 118 ELVNGVLYTGGWAKD---G----------LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (250)
Q Consensus 118 ~~~dgvIlpGG~~~~---~----------~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~ 172 (250)
+.+|+||+|||.... . .......++++.+.+++ +||.+||-|..+|+.+-
T Consensus 106 ~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~g-----k~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 106 EEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAK-----KPIGAVCISPAVVVALL 168 (242)
T ss_dssp GGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTT-----CCEEEETTHHHHHHHHH
T ss_pred ccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcC-----CEEEEECHHHHHHHHhC
Confidence 468999999996410 0 11123457788887888 99999999999999874
No 52
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=96.88 E-value=0.0061 Score=60.03 Aligned_cols=97 Identities=11% Similarity=0.053 Sum_probs=63.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC---hhhHHH-hcccCCEEEECCCCCCC---
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP---EDVLFE-KLELVNGVLYTGGWAKD--- 132 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~---~~~l~~-~l~~~dgvIlpGG~~~~--- 132 (250)
...|+|+...++ ....-....+++|+++|+.+.++..... ...+.. ....+|+||||||..-.
T Consensus 537 grKVaILvadG~----------fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~ 606 (688)
T 3ej6_A 537 TLRVGVLSTTKG----------GSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSG 606 (688)
T ss_dssp TCEEEEECCSSS----------SHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTST
T ss_pred CCEEEEEccCCC----------ccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCccccccc
Confidence 346888875431 0111223467899999999998864321 001111 12358999999996521
Q ss_pred ---ccch---HHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 133 ---GLYY---AIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 133 ---~~~~---~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
+... .....+++.+.+.+ |||-.||.|-|+|..+
T Consensus 607 ~~~~d~Lr~~~~a~~fV~e~~~hg-----KpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 607 KGAMSPLFPAGRPSQILTDGYRWG-----KPVAAVGSAKKALQSI 646 (688)
T ss_dssp TTTCCTTSCTTHHHHHHHHHHHTT-----CCEEEEGGGHHHHHHT
T ss_pred ccchhhhccCHHHHHHHHHHHHcC-----CEEEEeCccHHHHHHc
Confidence 1222 23458889998988 9999999999999875
No 53
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=96.60 E-value=0.0049 Score=56.43 Aligned_cols=96 Identities=15% Similarity=0.177 Sum_probs=62.6
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCCh---------------------------
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE--------------------------- 110 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~--------------------------- 110 (250)
...+.|+|+..++- ...-....++.|+++|+++..+..+...
T Consensus 203 ~~~~ki~ill~dg~-----------~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~ 271 (396)
T 3uk7_A 203 GANKRILFLCGDYM-----------EDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFAL 271 (396)
T ss_dssp CCCCEEEEECCTTE-----------EHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEEC
T ss_pred hccceEEEEecCCC-----------cchhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeec
Confidence 45578999886642 1111234567899999998877543110
Q ss_pred -hhHHH-hcccCCEEEECCCCCCCccch---HHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 111 -DVLFE-KLELVNGVLYTGGWAKDGLYY---AIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 111 -~~l~~-~l~~~dgvIlpGG~~~~~~~~---~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
..+.+ ....+|.|++|||.. +... ....++++.+.+++ +||.+||-|.++|+.+
T Consensus 272 ~~~~~~~~~~~~D~livpGg~~--~~~~~~~~~~~~~l~~~~~~~-----~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 272 TTNFDDLVSSSYDALVIPGGRA--PEYLALNEHVLNIVKEFMNSE-----KPVASICHGQQILAAA 330 (396)
T ss_dssp CSCGGGCCGGGCSEEEECCBSH--HHHHTTCHHHHHHHHHHHHTT-----CCEEEEGGGHHHHHHT
T ss_pred cCCHHHCCcccCCEEEECCCcc--hhhhccCHHHHHHHHHHHHCC-----CEEEEEchHHHHHHHc
Confidence 01111 134689999999964 2111 22346777777777 9999999999999985
No 54
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=96.50 E-value=0.0022 Score=51.82 Aligned_cols=49 Identities=18% Similarity=0.329 Sum_probs=36.2
Q ss_pred ccCCEEEECCC--C-CCCcc----chHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 118 ELVNGVLYTGG--W-AKDGL----YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 118 ~~~dgvIlpGG--~-~~~~~----~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
+.+|.|++||| . ..... ......++++.+.+++ +||.+||.|.++|+.+
T Consensus 65 ~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~g-----k~i~aiC~G~~~La~a 120 (175)
T 3cne_A 65 DEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKG-----KMMIGHCAGAMMFDFT 120 (175)
T ss_dssp GGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTT-----CEEEEETTHHHHHHHT
T ss_pred ccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCC-----CEEEEECHHHHHHHHC
Confidence 57899999999 4 32111 1223347778887777 9999999999999975
No 55
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=96.39 E-value=0.0077 Score=55.08 Aligned_cols=95 Identities=19% Similarity=0.218 Sum_probs=61.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCCh----------------------------
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE---------------------------- 110 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~---------------------------- 110 (250)
+...|+|+..++- . ..-....++.|+++|+++..+..+..+
T Consensus 11 ~~~kv~ill~dg~---------e--~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~ 79 (396)
T 3uk7_A 11 NSRTVLILCGDYM---------E--DYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLN 79 (396)
T ss_dssp CCCEEEEECCTTE---------E--HHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECC
T ss_pred cCCeEEEEeCCCc---------c--HHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeecc
Confidence 3467999876532 1 111233567899999998877543211
Q ss_pred hhHHH-hcccCCEEEECCCCCCCccch---HHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 111 DVLFE-KLELVNGVLYTGGWAKDGLYY---AIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 111 ~~l~~-~l~~~dgvIlpGG~~~~~~~~---~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
..+.+ ....+|.|++|||.. +... .....+++.+.+++ +||.+||-|.++|+.+
T Consensus 80 ~~~~~~~~~~~D~livpGG~~--~~~~~~~~~~~~~l~~~~~~~-----~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 80 ATFDEVDLSKYDGLVIPGGRA--PEYLALTASVVELVKEFSRSG-----KPIASICHGQLILAAA 137 (396)
T ss_dssp SCGGGCCGGGCSEEEECCBSH--HHHHTTCHHHHHHHHHHHHTT-----CCEEEETTTHHHHHHT
T ss_pred CChhhcCcccCCEEEECCCcc--hhhcccCHHHHHHHHHHHHcC-----CEEEEECchHHHHHhc
Confidence 01111 125689999999964 2111 22347777777777 9999999999999986
No 56
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=96.39 E-value=0.0092 Score=58.87 Aligned_cols=99 Identities=13% Similarity=0.075 Sum_probs=62.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCCh---hhHHH-hcccCCEEEECCCCCC--C
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE---DVLFE-KLELVNGVLYTGGWAK--D 132 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~---~~l~~-~l~~~dgvIlpGG~~~--~ 132 (250)
....|||+....++. ... -....++.|+++|+.++++...... ..+.+ ....+|+||||||..- .
T Consensus 528 ~g~kVaIL~a~~dGf-------e~~--E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~ 598 (688)
T 2iuf_A 528 DGLKVGLLASVNKPA-------SIA--QGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFG 598 (688)
T ss_dssp TTCEEEEECCTTCHH-------HHH--HHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCC
T ss_pred CCCEEEEEecCCCCC-------cHH--HHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCccccc
Confidence 345799987631110 111 1234678999999999988653310 11111 1346899999999521 0
Q ss_pred -------------cc-ch--HHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 133 -------------GL-YY--AIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 133 -------------~~-~~--~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
+. .. .....+++.+.+.+ |||-.||-|-++|..+
T Consensus 599 ~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~g-----KpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 599 ADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFG-----KTVGALGSGSDALESG 648 (688)
T ss_dssp TTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHT-----CEEEEEGGGHHHHHHT
T ss_pred ccccccccccccchhhcccChHHHHHHHHHHHcC-----CEEEEECchHHHHHHc
Confidence 11 11 13458888888888 9999999999988764
No 57
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=96.26 E-value=0.0061 Score=50.93 Aligned_cols=97 Identities=12% Similarity=0.069 Sum_probs=60.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC-Ch------------hhHHHh-cccCCEEE
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-PE------------DVLFEK-LELVNGVL 124 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~-~~------------~~l~~~-l~~~dgvI 124 (250)
+.+.|+|+..++- ....+ ...++.|+++|+++..+..+. .+ ..+.+. ...+|.|+
T Consensus 8 m~~~v~ill~~g~---------~~~e~--~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~li 76 (208)
T 3ot1_A 8 MSKRILVPVAHGS---------EEMET--VIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALA 76 (208)
T ss_dssp -CCEEEEEECTTC---------CHHHH--HHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEE
T ss_pred cCCeEEEEECCCC---------cHHHH--HHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEE
Confidence 4567999887643 11222 235678899999888776542 00 011111 24689999
Q ss_pred ECCCCC-CCc-cchHHHHHHHHHHHHhCCCCCCceEEcccchh-HHHHHH
Q 025574 125 YTGGWA-KDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF-ELLTMI 171 (250)
Q Consensus 125 lpGG~~-~~~-~~~~~~~~li~~~~~~~~~g~~~PILGIClG~-QlL~~~ 171 (250)
+|||.. ... .......++++.+.+++ +||.+||-|- .+|+.+
T Consensus 77 vpGG~~~~~~l~~~~~l~~~l~~~~~~g-----k~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 77 LPGGVGGAQAFADSTALLALIDAFSQQG-----KLVAAICATPALVFAKQ 121 (208)
T ss_dssp ECCCHHHHHHHHTCHHHHHHHHHHHHTT-----CEEEEETTHHHHTTTTT
T ss_pred ECCCchHHHHHhhCHHHHHHHHHHHHcC-----CEEEEEChhHHHHHHHC
Confidence 999952 110 01112347778777777 9999999998 888764
No 58
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=96.01 E-value=0.0088 Score=49.81 Aligned_cols=49 Identities=14% Similarity=0.166 Sum_probs=38.3
Q ss_pred cccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 117 LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 117 l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
...+|.||+|||....... ....++++.+.+++ ++|.+||-|-.+|+.+
T Consensus 69 ~~~~D~livpGG~~~~~~~-~~l~~~l~~~~~~g-----~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 69 LKELDLLVVCGGLRTPLKY-PELDRLLNDCAAHG-----MALGGLWNGAWFLGRA 117 (202)
T ss_dssp GTTCSEEEEECCTTCCSCC-TTHHHHHHHHHHHT-----CEEEEETTHHHHHHHH
T ss_pred CCCCCEEEEeCCCchhhcc-HHHHHHHHHHHhhC-----CEEEEECHHHHHHHHc
Confidence 3568999999997632222 34457788888888 9999999999999986
No 59
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=95.97 E-value=0.022 Score=49.09 Aligned_cols=49 Identities=14% Similarity=0.058 Sum_probs=36.5
Q ss_pred ccCCEEEECCCCCC-Cc-cchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 118 ELVNGVLYTGGWAK-DG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 118 ~~~dgvIlpGG~~~-~~-~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
+.+|+|++|||... .. .......++++.+.+++ +||-+||.|-.+|+.+
T Consensus 97 ~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~g-----k~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 97 SDYKVFFASAGHGALFDYPKAKNLQDIASKIYANG-----GVIAAICHGPLLFDGL 147 (244)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTT-----CEEEEETTGGGGGTTC
T ss_pred hhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcC-----CEEEEECHHHHHHHHh
Confidence 45899999999751 00 11123447888888888 9999999999999876
No 60
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=95.92 E-value=0.017 Score=52.86 Aligned_cols=97 Identities=18% Similarity=0.155 Sum_probs=60.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCCh-----h---h------HHHh-cccCCEE
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE-----D---V------LFEK-LELVNGV 123 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~-----~---~------l~~~-l~~~dgv 123 (250)
+...|+|+..++- ....+ ...++.|+.+|+++..+..+..+ . . +.+. ...+|.|
T Consensus 9 ~mkkV~ILl~dgf---------~~~El--~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaL 77 (365)
T 3fse_A 9 GKKKVAILIEQAV---------EDTEF--IIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAV 77 (365)
T ss_dssp --CEEEEECCTTB---------CHHHH--HHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEE
T ss_pred CceEEEEEECCCC---------cHHHH--HHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEE
Confidence 3457899887642 11122 23567889999988777543211 0 0 1110 1258999
Q ss_pred EECCCCCCCc-cchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 124 LYTGGWAKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 124 IlpGG~~~~~-~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
|+|||..... ........+++.+.+++ +||.+||-|-.+|+.+
T Consensus 78 iVPGG~g~~~l~~~~~l~~~Lr~~~~~g-----k~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 78 VIPGGMAPDKMRRNPNTVRFVQEAMEQG-----KLVAAVCHGPQVLIEG 121 (365)
T ss_dssp EECCBTHHHHHTTCHHHHHHHHHHHHTT-----CEEEEETTTHHHHHHT
T ss_pred EEECCcchhhccCCHHHHHHHHHHHHCC-----CEEEEECHHHHHHHHc
Confidence 9999974210 01122347777777777 9999999999999875
No 61
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=95.88 E-value=0.032 Score=49.22 Aligned_cols=50 Identities=10% Similarity=0.045 Sum_probs=36.6
Q ss_pred cccCCEEEECCCCCCC--ccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 117 LELVNGVLYTGGWAKD--GLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 117 l~~~dgvIlpGG~~~~--~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
.+.+|+||+|||.... -.......++++++.+++ ++|.+||.|-.+|+.+
T Consensus 143 ~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~g-----k~VaaIC~Gp~~La~a 194 (291)
T 1n57_A 143 DSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKND-----RFVISLCHGPAAFLAL 194 (291)
T ss_dssp TCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTT-----CEEEEETTGGGGGGGG
T ss_pred cccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcC-----CEEEEECccHHHHHhh
Confidence 3578999999996421 111223457888888888 9999999999977764
No 62
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=95.85 E-value=0.015 Score=48.70 Aligned_cols=50 Identities=8% Similarity=-0.057 Sum_probs=36.8
Q ss_pred cccCCEEEECCCCCCCcc---chHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 117 LELVNGVLYTGGWAKDGL---YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 117 l~~~dgvIlpGG~~~~~~---~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
++.+|.||+|||...... ......++++.+.+++ ++|.+||-|-.+|+.+
T Consensus 72 ~~~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~~g-----~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 72 FDFTNILIIGSIGDPLESLDKIDPALFDWIRELHLKG-----SKIVAIDTGIFVVAKA 124 (209)
T ss_dssp CSCCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHTT-----CEEEEETTHHHHHHHH
T ss_pred cCCCCEEEECCCCCchhhhccCCHHHHHHHHHHHhcC-----CEEEEEcHHHHHHHHc
Confidence 467899999999752111 1123346777777777 9999999999999986
No 63
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=95.83 E-value=0.011 Score=50.31 Aligned_cols=96 Identities=10% Similarity=0.036 Sum_probs=57.9
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHH-cCCeEEEeecCCC------------hhhHHHhcccCCEEEE
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVES-AGARVIPLIYNEP------------EDVLFEKLELVNGVLY 125 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~-~G~~~v~i~~~~~------------~~~l~~~l~~~dgvIl 125 (250)
|...|+|+..++-. ...+ ...++.|+. .|+++..+..+.. ...+. ....+|.|++
T Consensus 4 m~~~V~ill~~gf~---------~~e~--~~p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~-~~~~~D~liv 71 (231)
T 3noq_A 4 MAVQIGFLLFPEVQ---------QLDL--TGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFA-DCPPLDVICI 71 (231)
T ss_dssp CCEEEEEECCTTCC---------HHHH--HHHHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETT-TCCCCSEEEE
T ss_pred CcEEEEEEEeCCCc---------HHHH--HHHHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChh-HCCcCCEEEE
Confidence 44679999877531 1122 234567776 5777666543210 00111 2456899999
Q ss_pred CCCCCCCcc-chHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 126 TGGWAKDGL-YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 126 pGG~~~~~~-~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
|||...... .......+++.+.+++ ++|.+||-|-.+|+.+
T Consensus 72 pGG~g~~~~~~~~~l~~~lr~~~~~g-----~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 72 PGGTGVGALMEDPQALAFIRQQAARA-----RYVTSVSTGSLVLGAA 113 (231)
T ss_dssp CCSTTHHHHTTCHHHHHHHHHHHTTC-----SEEEEETTHHHHHHHT
T ss_pred CCCCChhhhccCHHHHHHHHHHHhcC-----CEEEEECHHHHHHHHc
Confidence 999752110 0112336667666666 9999999999999875
No 64
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=95.81 E-value=0.014 Score=51.76 Aligned_cols=97 Identities=15% Similarity=0.195 Sum_probs=61.2
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCC-eEEEeecCC----ChhhHHHhcccCCEEEECCCCCC--C
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA-RVIPLIYNE----PEDVLFEKLELVNGVLYTGGWAK--D 132 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~-~~v~i~~~~----~~~~l~~~l~~~dgvIlpGG~~~--~ 132 (250)
+|.|.++..... ....|. ..|.++++++|+ .+..+.... +.+++.+.++++|+|+++||... -
T Consensus 56 ~~~I~~IptAs~---------~~~~~~-~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt~~l~ 125 (291)
T 3en0_A 56 DAIIGIIPSASR---------EPLLIG-ERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQLRLC 125 (291)
T ss_dssp GCEEEEECTTCS---------SHHHHH-HHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCHHHHH
T ss_pred CCeEEEEeCCCC---------ChHHHH-HHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCCCHHHHH
Confidence 478888865432 224454 357889999999 566665532 12334456788999999999752 0
Q ss_pred ccchH-HHHHHHHHHHHhCCCCCCceEEcccchhHHHHH
Q 025574 133 GLYYA-IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (250)
Q Consensus 133 ~~~~~-~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~ 170 (250)
..+.+ ...+.++.+.+++ ..|+.|+|-|.-+++.
T Consensus 126 ~~l~~t~l~~~L~~~~~~G----~~~~~GtSAGA~i~~~ 160 (291)
T 3en0_A 126 GLLADTPLMDRIRQRVHNG----EISLAGTSAGAAVMGH 160 (291)
T ss_dssp HHHTTCHHHHHHHHHHHTT----SSEEEEETHHHHTTSS
T ss_pred HHHHhCCHHHHHHHHHHCC----CeEEEEeCHHHHhhhH
Confidence 11111 1235555555443 1699999999988865
No 65
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=95.74 E-value=0.027 Score=55.83 Aligned_cols=98 Identities=12% Similarity=0.063 Sum_probs=61.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC------------hhhHHHh-cccCCEEEE
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP------------EDVLFEK-LELVNGVLY 125 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~------------~~~l~~~-l~~~dgvIl 125 (250)
....|+|+..++- .... ....++.|+.+|+++.++..... ...+.+. ...+|+||+
T Consensus 533 ~~rkVaILl~dGf---------e~~E--l~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViV 601 (715)
T 1sy7_A 533 KSRRVAIIIADGY---------DNVA--YDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFI 601 (715)
T ss_dssp TTCEEEEECCTTB---------CHHH--HHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEE
T ss_pred CCCEEEEEEcCCC---------CHHH--HHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEE
Confidence 3457999887642 1111 23356789999999888764321 0111111 235799999
Q ss_pred CCCC-CCCc-cchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHh
Q 025574 126 TGGW-AKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (250)
Q Consensus 126 pGG~-~~~~-~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~ 172 (250)
|||. .... ........+++.+.+++ +||.+||-|-.+|+.++
T Consensus 602 PGG~~~~~~l~~~~~l~~~Lr~~~~~g-----K~IaAIC~G~~lLA~Al 645 (715)
T 1sy7_A 602 PGGAKAAETLSKNGRALHWIREAFGHL-----KAIGATGEAVDLVAKAI 645 (715)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHHHTT-----CEEEEETTHHHHHHHHH
T ss_pred cCCcccHhhhccCHHHHHHHHHHHhCC-----CEEEEECHHHHHHHHcc
Confidence 9994 3110 00112347778888888 99999999999999884
No 66
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=95.63 E-value=0.027 Score=48.84 Aligned_cols=97 Identities=12% Similarity=0.011 Sum_probs=57.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHH-HHcCCeEEEeecCCC------------hhhHHHhcccCCEEEE
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFV-ESAGARVIPLIYNEP------------EDVLFEKLELVNGVLY 125 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~l-e~~G~~~v~i~~~~~------------~~~l~~~l~~~dgvIl 125 (250)
+...|+|+..++- ....+ ...++.| +..|+++..+..+.. ...+.+.-..+|.||+
T Consensus 22 m~~~I~ill~~gf---------~~~e~--~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~~~yD~liV 90 (253)
T 3ewn_A 22 GDEQIAMLVYPGM---------TVMDL--VGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCPRDLTVLFA 90 (253)
T ss_dssp CCCEEEEECCTTB---------CHHHH--HHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSCSSCSEEEE
T ss_pred CCeEEEEEeCCCC---------cHHHH--HHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcCCCCCEEEE
Confidence 4468999987753 11222 2245667 456888777654321 0111111124599999
Q ss_pred CCCC-CCCc-cchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 126 TGGW-AKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 126 pGG~-~~~~-~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
|||. .... ........+++.+.+++ ++|.+||-|-.+|+.+
T Consensus 91 PGG~~g~~~l~~~~~l~~~Lr~~~~~g-----k~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 91 PGGTDGTLAAASDAETLAFMADRGARA-----KYITSVCSGSLILGAA 133 (253)
T ss_dssp CCBSHHHHHHTTCHHHHHHHHHHHTTC-----SEEEEETTHHHHHHHT
T ss_pred CCCccchhhhccCHHHHHHHHHHHHcC-----CEEEEEChHHHHHHHc
Confidence 9997 4110 01112336667666666 9999999999999875
No 67
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=95.51 E-value=0.013 Score=49.12 Aligned_cols=95 Identities=8% Similarity=0.029 Sum_probs=56.6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHc--CCeEEEeecCCC-----------hhhHHHhcccCCEEEECC
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA--GARVIPLIYNEP-----------EDVLFEKLELVNGVLYTG 127 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~--G~~~v~i~~~~~-----------~~~l~~~l~~~dgvIlpG 127 (250)
..|+|+..++-. ...+ ...++.|+.+ ++++..+..+.. .+...+....+|.|++||
T Consensus 5 ~~V~ill~~g~~---------~~e~--~~~~~~l~~a~~~~~v~~vs~~~~~V~~~~G~~v~~d~~~~~~~~~D~livpG 73 (211)
T 3mgk_A 5 YRIDVLLFNKFE---------TLDV--FGPVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRDENIEKILFVPG 73 (211)
T ss_dssp EEEEEECCTTCC---------HHHH--HHHHHHHTTCTTTEEEEEECSSCEEEECTTCCEEEEBCCCCCSSSEEEEEECC
T ss_pred eEEEEEEeCCcc---------hhHH--HHHHHHHHhCCCceEEEEEECCCCeEecCCCcEEEeccchhhCCCCCEEEECC
Confidence 368998877531 1122 2345677776 356655543210 000001133479999999
Q ss_pred CCCCCcc-chHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 128 GWAKDGL-YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 128 G~~~~~~-~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
|...... .......+++.+.+++ ++|.+||-|-.+|+.+
T Consensus 74 G~~~~~~~~~~~~~~~l~~~~~~~-----k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 74 GSGTREKVNDDNFINFIGNMVKES-----KYIISVCTGSALLSKA 113 (211)
T ss_dssp STHHHHHTTCHHHHHHHHHHHHHC-----SEEEECTTHHHHHHHT
T ss_pred CcchhhhcCCHHHHHHHHHHHHcC-----CEEEEEchHHHHHHhc
Confidence 9642110 1123347778887888 9999999999999875
No 68
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=95.30 E-value=0.0092 Score=50.05 Aligned_cols=77 Identities=14% Similarity=0.066 Sum_probs=51.2
Q ss_pred HHHHHHHcCCeEEEeecCCC-----h--------------hhH------HH-hcccCCEEEECCCCCCC--ccchHHHHH
Q 025574 90 YVKFVESAGARVIPLIYNEP-----E--------------DVL------FE-KLELVNGVLYTGGWAKD--GLYYAIVEK 141 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~~-----~--------------~~l------~~-~l~~~dgvIlpGG~~~~--~~~~~~~~~ 141 (250)
.++.|+++|+++.++..+.. . ..+ .+ ....+|.|++|||.... -.......+
T Consensus 34 p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~ 113 (224)
T 1u9c_A 34 PYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQY 113 (224)
T ss_dssp HHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHH
T ss_pred HHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHHHhhcCHHHHH
Confidence 45788899998887764321 0 001 01 02368999999997521 011123447
Q ss_pred HHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 142 VFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 142 li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
+++.+.+++ +||.+||.|-++|+.+
T Consensus 114 ~l~~~~~~~-----k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 114 VLQQFAEDG-----RIIAAVCHGPSGLVNA 138 (224)
T ss_dssp HHHHHHHTT-----CEEEEETTGGGGGTTC
T ss_pred HHHHHHHCC-----CEEEEEChHHHHHHHc
Confidence 788888888 9999999999998864
No 69
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=94.70 E-value=0.013 Score=50.09 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=36.0
Q ss_pred ccCCEEEECCCCCC--CccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 118 ELVNGVLYTGGWAK--DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 118 ~~~dgvIlpGG~~~--~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
+.+|+|++|||... +-.......++++.+.+++ +||.+||.|-.+|+.+
T Consensus 97 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~g-----k~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 97 DDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANG-----GVVAAVCHGPAIFDGL 147 (243)
T ss_dssp GGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTT-----CEEEEETTGGGGGTTC
T ss_pred hhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcC-----CEEEEECCCHHHHHhc
Confidence 36899999999751 0011123447788888888 9999999999988865
No 70
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=94.55 E-value=0.02 Score=49.46 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=36.2
Q ss_pred ccCCEEEECCCCCC-Cc-cchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHH
Q 025574 118 ELVNGVLYTGGWAK-DG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (250)
Q Consensus 118 ~~~dgvIlpGG~~~-~~-~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~ 171 (250)
+.+|+|++|||... .. .......++++.+.+++ +||-+||.|-.+|+.+
T Consensus 104 ~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~g-----k~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 104 HDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRG-----GVIGAVCHGPAMLPGI 154 (247)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTT-----CEEEEETTGGGGGGGC
T ss_pred hhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcC-----CEEEEEChHHHHHHHh
Confidence 35799999999752 00 11123347888888888 9999999999999865
No 71
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=92.31 E-value=0.14 Score=42.12 Aligned_cols=73 Identities=15% Similarity=0.071 Sum_probs=40.2
Q ss_pred HHHHHHHcCCeEEEeecCCCh------------------hh---HHHhcccCCEEEECCCCCCCccchH---HHHHHHHH
Q 025574 90 YVKFVESAGARVIPLIYNEPE------------------DV---LFEKLELVNGVLYTGGWAKDGLYYA---IVEKVFKK 145 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~~~------------------~~---l~~~l~~~dgvIlpGG~~~~~~~~~---~~~~li~~ 145 (250)
-++.|+++|..+..+...... ++ .+...+.+|.|++|||..- ..... ...++++.
T Consensus 23 p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG~~~-~~~l~~~~~l~~~l~~ 101 (194)
T 4gdh_A 23 PWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLG-AKTLSTTPFVQQVVKE 101 (194)
T ss_dssp HHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCCHHH-HHHHHTCHHHHHHHHH
T ss_pred HHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCCchh-HhHhhhCHHHHHHHHH
Confidence 456789999877655432110 00 0111345799999999430 11111 12244444
Q ss_pred HHHh-CCCCCCceEEcccchhHHH
Q 025574 146 ILEK-NDAGDHFPLYAHCLGFELL 168 (250)
Q Consensus 146 ~~~~-~~~g~~~PILGIClG~QlL 168 (250)
+.++ + +++-.||-|..++
T Consensus 102 ~~~~~~-----k~iaaiC~g~~l~ 120 (194)
T 4gdh_A 102 FYKKPN-----KWIGMICAGTLTA 120 (194)
T ss_dssp HTTCTT-----CEEEEEGGGGHHH
T ss_pred hhhcCC-----ceEEeecccccch
Confidence 4322 3 8999999998443
No 72
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=89.01 E-value=0.2 Score=42.78 Aligned_cols=49 Identities=20% Similarity=0.144 Sum_probs=31.1
Q ss_pred cccCCEEEECCC-CCCCccchHHHHHHHHHHHHhCCCCCCc-eEEcccchhHHHHHH
Q 025574 117 LELVNGVLYTGG-WAKDGLYYAIVEKVFKKILEKNDAGDHF-PLYAHCLGFELLTMI 171 (250)
Q Consensus 117 l~~~dgvIlpGG-~~~~~~~~~~~~~li~~~~~~~~~g~~~-PILGIClG~QlL~~~ 171 (250)
...+|.||+||| ... ......+.+++++ ..+++ + +|.+||-|-.+|+.+
T Consensus 78 ~~~~D~liVPGG~~g~--~~l~~~~~l~~~L--~~~~~--~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 78 VKEQDVVLITSGYRGI--PAALQDENFMSAL--KLDPS--RQLIGSICAGSFVLHEL 128 (236)
T ss_dssp GGGCSEEEECCCTTHH--HHHHTCHHHHHHC--CCCTT--TCEEEEETTHHHHHHHT
T ss_pred ccCCCEEEEcCCccCH--hhhccCHHHHHHH--HhCCC--CCEEEEEcHHHHHHHHc
Confidence 467899999999 331 1111112444444 22222 5 999999999999986
No 73
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=87.64 E-value=2.1 Score=37.12 Aligned_cols=86 Identities=6% Similarity=-0.051 Sum_probs=52.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhcc---cCCEEEECCCCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKLE---LVNGVLYTGGWAK 131 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l~---~~dgvIlpGG~~~ 131 (250)
.++.||++...... .....-+...+.+.+++.|..+++.....+.+. +...+. ++||||+.+...
T Consensus 2 ~~~~Ig~i~p~~~~-------~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~- 73 (350)
T 3h75_A 2 SLTSVVFLNPGNST-------ETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQY- 73 (350)
T ss_dssp -CCEEEEEECSCTT-------CHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSS-
T ss_pred CCCEEEEECCCCCC-------ChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchh-
Confidence 46789998754321 112233555677788889999888765544332 333444 899999986211
Q ss_pred CccchHHHHHHHHHHHHhCCCCCCceEEcccc
Q 025574 132 DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (250)
Q Consensus 132 ~~~~~~~~~~li~~~~~~~~~g~~~PILGICl 163 (250)
....+++.+.+.+ +|+.-+..
T Consensus 74 ------~~~~~~~~~~~~g-----iPvV~~~~ 94 (350)
T 3h75_A 74 ------VAPQILRLSQGSG-----IKLFIVNS 94 (350)
T ss_dssp ------HHHHHHHHHTTSC-----CEEEEEES
T ss_pred ------hHHHHHHHHHhCC-----CcEEEEcC
Confidence 1235566666666 88876643
No 74
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=87.10 E-value=0.27 Score=39.71 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=38.0
Q ss_pred CCCCCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeec-CCChhhHHH----hcc-cCCEEEECCC
Q 025574 55 SKLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLFE----KLE-LVNGVLYTGG 128 (250)
Q Consensus 55 ~~~~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~~----~l~-~~dgvIlpGG 128 (250)
|..+.+|.++|++--..-..|.. .+....++ ..+|++.|++++.... ..+ +.+.+ .++ ++|-||.+||
T Consensus 2 ~~~~~~~rv~ii~tGdEl~~G~i-~Dsn~~~l----~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG 75 (164)
T 3pzy_A 2 PGSMTTRSARVIIASTRASSGEY-EDRCGPII----TEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGG 75 (164)
T ss_dssp -----CCEEEEEEECHHHHC-----CCHHHHH----HHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESC
T ss_pred CCCCCCCEEEEEEECCCCCCCce-eeHHHHHH----HHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCC
Confidence 34577899999875422111221 12233333 4588999997753221 223 44433 333 6899999999
Q ss_pred CCCC
Q 025574 129 WAKD 132 (250)
Q Consensus 129 ~~~~ 132 (250)
-+..
T Consensus 76 ~s~g 79 (164)
T 3pzy_A 76 TGIA 79 (164)
T ss_dssp CSSS
T ss_pred CCCC
Confidence 8753
No 75
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=84.83 E-value=0.88 Score=39.45 Aligned_cols=82 Identities=18% Similarity=0.127 Sum_probs=47.1
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----------HHHhcccCCEEEECCCCC
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----------LFEKLELVNGVLYTGGWA 130 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----------l~~~l~~~dgvIlpGG~~ 130 (250)
..|+|+.+|.+.. ..-....+.+++++.|.++...... .+. .....+.+|.||.-||-+
T Consensus 6 kki~ii~np~~~~---------~~~~~~~i~~~l~~~g~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~vi~~GGDG 74 (292)
T 2an1_A 6 KCIGIVGHPRHPT---------ALTTHEMLYRWLCDQGYEVIVEQQI--AHELQLKNVPTGTLAEIGQQADLAVVVGGDG 74 (292)
T ss_dssp CEEEEECC----------------CHHHHHHHHHHHTTCEEEEEHHH--HHHTTCSSCCEECHHHHHHHCSEEEECSCHH
T ss_pred cEEEEEEcCCCHH---------HHHHHHHHHHHHHHCCCEEEEecch--hhhcccccccccchhhcccCCCEEEEEcCcH
Confidence 4689999886421 1123456888999999987654311 000 111234689999999844
Q ss_pred CCccchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 131 KDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 131 ~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
+.....+.+.+.+ +|++||=.|.
T Consensus 75 -------T~l~a~~~~~~~~-----~P~lGI~~Gt 97 (292)
T 2an1_A 75 -------NMLGAARTLARYD-----INVIGINRGN 97 (292)
T ss_dssp -------HHHHHHHHHTTSS-----CEEEEBCSSS
T ss_pred -------HHHHHHHHhhcCC-----CCEEEEECCC
Confidence 2334445544445 8999997663
No 76
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=82.61 E-value=1.1 Score=37.19 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=36.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCe--EEEe-ecCCChhhHH----Hhcc--cCCEEEECCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGAR--VIPL-IYNEPEDVLF----EKLE--LVNGVLYTGGW 129 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~--~v~i-~~~~~~~~l~----~~l~--~~dgvIlpGG~ 129 (250)
.+|.++|++--..-..|.. .+....+ +.++|++.|+. ++.. ....+.+.+. +.++ ++|-||.+||-
T Consensus 2 ~~~rv~IIttGdEl~~G~i-~D~n~~~----L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGt 76 (195)
T 1di6_A 2 ATLRIGLVSISDRASSGVY-QDKGIPA----LEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGT 76 (195)
T ss_dssp CCEEEEEEEEECC--------CCHHHH----HHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CCCEEEEEEECCCCCCCeE-EchHHHH----HHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 4688998765433222222 1222333 34588888886 3211 1123444443 3334 58999999998
Q ss_pred CCC
Q 025574 130 AKD 132 (250)
Q Consensus 130 ~~~ 132 (250)
+..
T Consensus 77 g~g 79 (195)
T 1di6_A 77 GPA 79 (195)
T ss_dssp SSS
T ss_pred CCC
Confidence 753
No 77
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=82.24 E-value=7.1 Score=32.43 Aligned_cols=86 Identities=9% Similarity=0.072 Sum_probs=50.3
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhH----HHhc-ccCCEEEECCCCCCC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGWAKD 132 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dgvIlpGG~~~~ 132 (250)
....+||++..... .....-+...+.+.+++.|..++......+.+.. ...+ .++||||+.+....
T Consensus 6 ~~~~~Ig~i~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~- 76 (293)
T 3l6u_A 6 PKRNIVGFTIVNDK--------HEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDV- 76 (293)
T ss_dssp ---CEEEEEESCSC--------SHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTT-
T ss_pred CCCcEEEEEEecCC--------cHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChH-
Confidence 34578999875422 1223335566777888899998887665444322 2211 46999999865431
Q ss_pred ccchHHHHHHHHHHHHhCCCCCCceEEccc
Q 025574 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 133 ~~~~~~~~~li~~~~~~~~~g~~~PILGIC 162 (250)
. ....++.+.+.+ +|+.-+.
T Consensus 77 -~----~~~~~~~~~~~~-----iPvV~~~ 96 (293)
T 3l6u_A 77 -Y----IGSAIEEAKKAG-----IPVFAID 96 (293)
T ss_dssp -T----THHHHHHHHHTT-----CCEEEES
T ss_pred -H----HHHHHHHHHHcC-----CCEEEec
Confidence 1 123456666667 8876553
No 78
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=82.09 E-value=8.7 Score=32.57 Aligned_cols=84 Identities=13% Similarity=0.024 Sum_probs=51.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhH----HHhc-ccCCEEEECCCCCCCc
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGWAKDG 133 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dgvIlpGG~~~~~ 133 (250)
.+..|||+..... .....-+...+.+.+++.|..+.+.....+.+.. ...+ .++||||+.+...
T Consensus 2 ~~~~Igvi~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~--- 70 (330)
T 3uug_A 2 DKGSVGIAMPTKS--------SARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDG--- 70 (330)
T ss_dssp CCCEEEEEECCSS--------STHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSG---
T ss_pred CCcEEEEEeCCCc--------chHHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCc---
Confidence 4678999875432 1223335566778889999998877654443322 2211 4699999987542
Q ss_pred cchHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 134 LYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 134 ~~~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
. .....++.+.+.+ +|+.-+
T Consensus 71 ~---~~~~~~~~~~~~g-----iPvV~~ 90 (330)
T 3uug_A 71 T---TLSDVLKQAGEQG-----IKVIAY 90 (330)
T ss_dssp G---GGHHHHHHHHHTT-----CEEEEE
T ss_pred h---hHHHHHHHHHHCC-----CCEEEE
Confidence 1 1224566666777 888644
No 79
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=81.83 E-value=8.1 Score=32.05 Aligned_cols=84 Identities=15% Similarity=0.166 Sum_probs=50.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhH----HHhc-ccCCEEEECCCCCCCc
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGWAKDG 133 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dgvIlpGG~~~~~ 133 (250)
...+||++..... .....-+...+.+.+++.|..++......+.+.. ...+ .++||||+.+...
T Consensus 4 ~~~~Ig~i~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--- 72 (291)
T 3l49_A 4 EGKTIGITAIGTD--------HDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNL--- 72 (291)
T ss_dssp TTCEEEEEESCCS--------SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCH---
T ss_pred CCcEEEEEeCCCC--------ChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh---
Confidence 4468999875321 1122334566778888999998887655443322 1111 4699999986532
Q ss_pred cchHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 134 LYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 134 ~~~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
......++.+.+.+ +|+.-+
T Consensus 73 ---~~~~~~~~~~~~~~-----iPvV~~ 92 (291)
T 3l49_A 73 ---DVLNPWLQKINDAG-----IPLFTV 92 (291)
T ss_dssp ---HHHHHHHHHHHHTT-----CCEEEE
T ss_pred ---hhhHHHHHHHHHCC-----CcEEEe
Confidence 11234566666667 887654
No 80
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=81.67 E-value=10 Score=31.96 Aligned_cols=83 Identities=18% Similarity=0.104 Sum_probs=49.4
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhH----HHhc-ccCCEEEECCCCCCCcc
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGWAKDGL 134 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dgvIlpGG~~~~~~ 134 (250)
+.+||++..... + ....-+...+.+.+++.|..+.......+.+.. ...+ .++||||+.+.... .
T Consensus 2 ~~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~--~ 71 (313)
T 3m9w_A 2 EVKIGMAIDDLR-------L-ERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQ--V 71 (313)
T ss_dssp -CEEEEEESCCS-------S-STTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTT--S
T ss_pred CcEEEEEeCCCC-------C-hHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh--h
Confidence 468999875422 1 222334566778899999998877655443322 2211 46999999876431 1
Q ss_pred chHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 135 YYAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 135 ~~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
....++.+.+.+ +|+.-+
T Consensus 72 ----~~~~~~~~~~~~-----iPvV~~ 89 (313)
T 3m9w_A 72 ----LSNVVKEAKQEG-----IKVLAY 89 (313)
T ss_dssp ----CHHHHHHHHTTT-----CEEEEE
T ss_pred ----hHHHHHHHHHCC-----CeEEEE
Confidence 123456666666 887644
No 81
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=81.39 E-value=2.2 Score=37.45 Aligned_cols=82 Identities=18% Similarity=0.168 Sum_probs=46.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCCh------------------hhH--H-HhcccC
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE------------------DVL--F-EKLELV 120 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~------------------~~l--~-~~l~~~ 120 (250)
.|+|+.+|... ...-....+.++|++.|.++......... +.. . ...+.+
T Consensus 6 ki~iI~n~~~~---------~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 76 (307)
T 1u0t_A 6 SVLLVVHTGRD---------EATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGC 76 (307)
T ss_dssp EEEEEESSSGG---------GGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------C
T ss_pred EEEEEEeCCCH---------HHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCC
Confidence 58999888541 11223566889999999987654322110 000 0 123457
Q ss_pred CEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccch
Q 025574 121 NGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (250)
Q Consensus 121 dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG 164 (250)
|.||.-||-+ +.....+.+...+ +|++||=.|
T Consensus 77 d~vi~~GGDG-------T~l~a~~~~~~~~-----~pvlgi~~G 108 (307)
T 1u0t_A 77 ELVLVLGGDG-------TFLRAAELARNAS-----IPVLGVNLG 108 (307)
T ss_dssp CCEEEEECHH-------HHHHHHHHHHHHT-----CCEEEEECS
T ss_pred CEEEEEeCCH-------HHHHHHHHhccCC-----CCEEEEeCC
Confidence 8888888843 2334445555556 999999776
No 82
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=81.38 E-value=8.4 Score=31.93 Aligned_cols=87 Identities=10% Similarity=0.042 Sum_probs=50.4
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHH----Hh-cccCCEEEECCCCCCCcc
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLF----EK-LELVNGVLYTGGWAKDGL 134 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~----~~-l~~~dgvIlpGG~~~~~~ 134 (250)
+..||++..... .....-+...+.+.+++.|..+.......+.+... .. -.++||||+.+.......
T Consensus 15 ~~~Igvi~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~ 86 (298)
T 3tb6_A 15 NKTIGVLTTYIS--------DYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQT 86 (298)
T ss_dssp CCEEEEEESCSS--------STTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCC
T ss_pred CceEEEEeCCCC--------chHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence 378999875432 12233345567788889999988876554433222 11 146999999876431110
Q ss_pred chHHHHHHHHHHHHhCCCCCCceEEccc
Q 025574 135 YYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 135 ~~~~~~~li~~~~~~~~~g~~~PILGIC 162 (250)
.....++.+.+.+ +|+.-+.
T Consensus 87 ---~~~~~~~~~~~~~-----iPvV~~~ 106 (298)
T 3tb6_A 87 ---PNIGYYLNLEKNG-----IPFAMIN 106 (298)
T ss_dssp ---TTHHHHHHHHHTT-----CCEEEES
T ss_pred ---CcHHHHHHHHhcC-----CCEEEEe
Confidence 0123455555566 7776543
No 83
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=81.02 E-value=1.1 Score=36.46 Aligned_cols=101 Identities=18% Similarity=0.143 Sum_probs=51.5
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeec-CCChhhHH----HhcccCCEEEECCCCCCCcc
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLF----EKLELVNGVLYTGGWAKDGL 134 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~----~~l~~~dgvIlpGG~~~~~~ 134 (250)
+|.++|++--..--.|+. .+....+ +.++|++.|+.+..... ..+.+.+. +.++++|-||.+||-+..+.
T Consensus 3 ~~~v~IistGdEll~G~i-~DtN~~~----l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~~~~ 77 (172)
T 3kbq_A 3 AKNASVITVGNEILKGRT-VNTNAAF----IGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFD 77 (172)
T ss_dssp -CEEEEEEECHHHHTTSS-CCHHHHH----HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSSSTT
T ss_pred CCEEEEEEEcccccCCcE-EeHHHHH----HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCcc
Confidence 477888764321111221 1223333 34589999998764432 23445443 33456899999999875321
Q ss_pred chHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHHHhcC
Q 025574 135 YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISK 174 (250)
Q Consensus 135 ~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~~~GG 174 (250)
- ...+.+..+++. ++.+-=--++.|-..++|
T Consensus 78 D--~T~ea~a~~~~~-------~l~~~~e~~~~i~~~~~~ 108 (172)
T 3kbq_A 78 D--MTVEGFAKCIGQ-------DLRIDEDALAMIKKKYGQ 108 (172)
T ss_dssp C--CHHHHHHHHHTC-------CCEECHHHHHHHHHHHC-
T ss_pred c--chHHHHHHHcCC-------CeeeCHHHHHHHHHHHcC
Confidence 1 122344544443 333333335556555553
No 84
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=80.10 E-value=3.4 Score=33.06 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=39.7
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEee-cCCChhhHH----Hhcc--cCCEEEECCCC
Q 025574 57 LNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI-YNEPEDVLF----EKLE--LVNGVLYTGGW 129 (250)
Q Consensus 57 ~~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~-~~~~~~~l~----~~l~--~~dgvIlpGG~ 129 (250)
...+|.++|++--..- ++. .+....++ ..+|++.|++++... ...+.+.+. +.++ ++|-||.+||-
T Consensus 10 v~~~~rv~Ii~tGdEl--g~i-~Dsn~~~l----~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~ 82 (169)
T 1y5e_A 10 APKEVRCKIVTISDTR--TEE-TDKSGQLL----HELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGT 82 (169)
T ss_dssp --CCCEEEEEEECSSC--CTT-TCHHHHHH----HHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCC
T ss_pred cccCCEEEEEEEcCcc--Cee-ccChHHHH----HHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 3567899998743221 221 22233333 457888999876432 223444443 3445 78999999998
Q ss_pred CCC
Q 025574 130 AKD 132 (250)
Q Consensus 130 ~~~ 132 (250)
+..
T Consensus 83 g~g 85 (169)
T 1y5e_A 83 GIT 85 (169)
T ss_dssp SSS
T ss_pred CCC
Confidence 753
No 85
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=80.06 E-value=1.3 Score=36.36 Aligned_cols=70 Identities=16% Similarity=0.062 Sum_probs=40.2
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEee-cCCChhhHH----Hhc-ccCCEEEECCCCC
Q 025574 57 LNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI-YNEPEDVLF----EKL-ELVNGVLYTGGWA 130 (250)
Q Consensus 57 ~~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~-~~~~~~~l~----~~l-~~~dgvIlpGG~~ 130 (250)
...+|.|+|++--..-..|+ .+....+ +..++++.|++++... ...+.+.+. +.+ +++|-||.+||-+
T Consensus 27 ~~~~~rvaIistGdEl~~G~--~Dsn~~~----L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts 100 (185)
T 3rfq_A 27 ELVVGRALVVVVDDRTAHGD--EDHSGPL----VTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTG 100 (185)
T ss_dssp --CCEEEEEEEECHHHHTTC--CCSHHHH----HHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred CCCCCEEEEEEECcccCCCC--cCcHHHH----HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 35789999987542111121 1122223 3458999998876433 223445443 333 4689999999987
Q ss_pred CC
Q 025574 131 KD 132 (250)
Q Consensus 131 ~~ 132 (250)
..
T Consensus 101 ~g 102 (185)
T 3rfq_A 101 VT 102 (185)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 86
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=79.90 E-value=1 Score=41.07 Aligned_cols=83 Identities=11% Similarity=0.000 Sum_probs=48.8
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC-Ch-------------------hhHHHhcccCC
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-PE-------------------DVLFEKLELVN 121 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~-~~-------------------~~l~~~l~~~d 121 (250)
.|||++.+.+ .........+++||.+.|..+.+=.... .. ....+..+.+|
T Consensus 40 ~I~iv~K~~~---------~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 110 (365)
T 3pfn_A 40 SVLVIKKMRD---------ASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQID 110 (365)
T ss_dssp EEEEEECTTC---------GGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCS
T ss_pred EEEEEecCCC---------HHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCC
Confidence 6999998865 2234455678999999998765421100 00 00011224678
Q ss_pred EEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 122 gvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
-||.-||-+ .+++.+.... +...||+||-+|.
T Consensus 111 lvI~lGGDG----------T~L~aa~~~~--~~~~PvlGiN~G~ 142 (365)
T 3pfn_A 111 FIICLGGDG----------TLLYASSLFQ--GSVPPVMAFHLGS 142 (365)
T ss_dssp EEEEESSTT----------HHHHHHHHCS--SSCCCEEEEESSS
T ss_pred EEEEEcChH----------HHHHHHHHhc--cCCCCEEEEcCCC
Confidence 999999865 2233332211 1228999999874
No 87
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=79.48 E-value=9.9 Score=31.09 Aligned_cols=82 Identities=12% Similarity=0.084 Sum_probs=47.8
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecC--CChhh----HHHhc-cc-CCEEEECCCCCCC
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN--EPEDV----LFEKL-EL-VNGVLYTGGWAKD 132 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~--~~~~~----l~~~l-~~-~dgvIlpGG~~~~ 132 (250)
|.||++..... .....-+.+.+.+.+++.|..+.....+ .+.+. +...+ .+ +||||+.+....
T Consensus 1 ~~Ig~i~~~~~--------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~- 71 (276)
T 3ksm_A 1 PKLLLVLKGDS--------NAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAE- 71 (276)
T ss_dssp CEEEEECSCSS--------STHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTT-
T ss_pred CeEEEEeCCCC--------ChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHH-
Confidence 57899875422 1223345566778888899988876532 23221 22222 35 999999875321
Q ss_pred ccchHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 133 ~~~~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
. ....++.+.+.+ +|+.-+
T Consensus 72 -~----~~~~~~~~~~~~-----ipvV~~ 90 (276)
T 3ksm_A 72 -D----LTPSVAQYRARN-----IPVLVV 90 (276)
T ss_dssp -T----THHHHHHHHHTT-----CCEEEE
T ss_pred -H----HHHHHHHHHHCC-----CcEEEE
Confidence 1 124456666667 887655
No 88
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=79.20 E-value=7.5 Score=31.12 Aligned_cols=67 Identities=24% Similarity=0.224 Sum_probs=39.2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEee-cCCChhhHH----Hhcc--cCCEEEECCCCC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI-YNEPEDVLF----EKLE--LVNGVLYTGGWA 130 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~-~~~~~~~l~----~~l~--~~dgvIlpGG~~ 130 (250)
..+|.++|++--.. .|.. .+....+ +.++|++.|++++... ...+.+.+. +.++ .+|-||.+||-+
T Consensus 8 ~~~~~v~Ii~tGdE--~g~i-~D~n~~~----l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g 80 (172)
T 1mkz_A 8 FIPTRIAILTVSNR--RGEE-DDTSGHY----LRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTG 80 (172)
T ss_dssp CCCCEEEEEEECSS--CCGG-GCHHHHH----HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCS
T ss_pred CCCCEEEEEEEeCC--CCcc-cCccHHH----HHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCC
Confidence 45689999864432 1221 1222333 3458899999876432 233444443 3334 389999999987
Q ss_pred C
Q 025574 131 K 131 (250)
Q Consensus 131 ~ 131 (250)
.
T Consensus 81 ~ 81 (172)
T 1mkz_A 81 L 81 (172)
T ss_dssp S
T ss_pred C
Confidence 5
No 89
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=79.07 E-value=2.9 Score=36.57 Aligned_cols=70 Identities=11% Similarity=0.138 Sum_probs=47.0
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHH
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEK 141 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~ 141 (250)
.|||..++.. . +..+.++|++.|.++...... .+ .++.+|.||.-||-+ .
T Consensus 31 ki~iv~~~~~---------~-----~~~l~~~L~~~g~~v~~~~~~--~~----~~~~~DlvIvlGGDG----------T 80 (278)
T 1z0s_A 31 RAAVVYKTDG---------H-----VKRIEEALKRLEVEVELFNQP--SE----ELENFDFIVSVGGDG----------T 80 (278)
T ss_dssp EEEEEESSST---------T-----HHHHHHHHHHTTCEEEEESSC--CG----GGGGSSEEEEEECHH----------H
T ss_pred EEEEEeCCcH---------H-----HHHHHHHHHHCCCEEEEcccc--cc----ccCCCCEEEEECCCH----------H
Confidence 4899887643 1 566888999999988664322 12 256789999999944 2
Q ss_pred HHHHHHHhCCCCCCceEEcccch
Q 025574 142 VFKKILEKNDAGDHFPLYAHCLG 164 (250)
Q Consensus 142 li~~~~~~~~~g~~~PILGIClG 164 (250)
+++.+.... .. +||+||-.|
T Consensus 81 ~L~aa~~~~--~~-~PilGIN~G 100 (278)
T 1z0s_A 81 ILRILQKLK--RC-PPIFGINTG 100 (278)
T ss_dssp HHHHHTTCS--SC-CCEEEEECS
T ss_pred HHHHHHHhC--CC-CcEEEECCC
Confidence 344442222 23 899999987
No 90
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=79.06 E-value=10 Score=31.33 Aligned_cols=83 Identities=12% Similarity=0.075 Sum_probs=49.6
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhH----HHh-cccCCEEEECCCCCCC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGGWAKD 132 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dgvIlpGG~~~~ 132 (250)
.....||++..... .....-+...+.+.+++.|..+.......+.+.. ... -.++||||+.+...
T Consensus 5 ~~s~~Igvi~~~~~--------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-- 74 (276)
T 3jy6_A 5 QSSKLIAVIVANID--------DYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN-- 74 (276)
T ss_dssp CCCCEEEEEESCTT--------SHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC--
T ss_pred CCCcEEEEEeCCCC--------chHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc--
Confidence 44578999875421 1122334556777888899998887755443322 111 14799999987643
Q ss_pred ccchHHHHHHHHHHHHhCCCCCCceEEccc
Q 025574 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 133 ~~~~~~~~~li~~~~~~~~~g~~~PILGIC 162 (250)
...++.+.+.+ +|+.-+.
T Consensus 75 -------~~~~~~l~~~~-----iPvV~i~ 92 (276)
T 3jy6_A 75 -------PQTVQEILHQQ-----MPVVSVD 92 (276)
T ss_dssp -------HHHHHHHHTTS-----SCEEEES
T ss_pred -------HHHHHHHHHCC-----CCEEEEe
Confidence 13445555556 7776544
No 91
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=78.77 E-value=8.3 Score=31.92 Aligned_cols=81 Identities=12% Similarity=0.020 Sum_probs=46.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHH
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI 138 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~ 138 (250)
....||++..... + ....-+...+.+.+++.|..+++.....+.+.... + ++||||+.+... +.
T Consensus 7 ~~~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~-~-~vdgiI~~~~~~-~~----- 70 (277)
T 3cs3_A 7 QTNIIGVYLADYG-------G-SFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPE-K-MVDGAIILDWTF-PT----- 70 (277)
T ss_dssp CCCEEEEEECSSC-------T-TTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCT-T-TCSEEEEECTTS-CH-----
T ss_pred CCcEEEEEecCCC-------C-hhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhh-c-cccEEEEecCCC-CH-----
Confidence 4468999874321 1 22233445667788889998877654433222111 2 799999987543 11
Q ss_pred HHHHHHHHHHhCCCCCCceEEccc
Q 025574 139 VEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 139 ~~~li~~~~~~~~~g~~~PILGIC 162 (250)
..++.+.+.+ +|+.-+.
T Consensus 71 --~~~~~l~~~~-----iPvV~~~ 87 (277)
T 3cs3_A 71 --KEIEKFAERG-----HSIVVLD 87 (277)
T ss_dssp --HHHHHHHHTT-----CEEEESS
T ss_pred --HHHHHHHhcC-----CCEEEEe
Confidence 2234444556 7876553
No 92
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=78.68 E-value=9.7 Score=31.93 Aligned_cols=83 Identities=16% Similarity=0.060 Sum_probs=49.6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecC--CChhh----HHHhc-ccCCEEEECCCCCCC
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN--EPEDV----LFEKL-ELVNGVLYTGGWAKD 132 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~--~~~~~----l~~~l-~~~dgvIlpGG~~~~ 132 (250)
+..||++..... .....-+...+.+.+++.|..++..... .+.+. +...+ .++||||+.+...
T Consensus 3 ~~~Igvi~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~-- 72 (297)
T 3rot_A 3 RDKYYLITHGSQ--------DPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSD-- 72 (297)
T ss_dssp CCEEEEECSCCC--------SHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCS--
T ss_pred eEEEEEEecCCC--------CchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCH--
Confidence 568999875432 1223345566778888899998876543 23322 22222 4699999976543
Q ss_pred ccchHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 133 ~~~~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
.. ....++.+.+.+ +|+.-+
T Consensus 73 ~~----~~~~~~~~~~~g-----iPvV~~ 92 (297)
T 3rot_A 73 TA----FSKSLQRANKLN-----IPVIAV 92 (297)
T ss_dssp ST----THHHHHHHHHHT-----CCEEEE
T ss_pred HH----HHHHHHHHHHCC-----CCEEEE
Confidence 11 124456666667 887654
No 93
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=77.90 E-value=11 Score=31.27 Aligned_cols=63 Identities=8% Similarity=-0.007 Sum_probs=36.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~ 129 (250)
|+..||++..... .....-+...+.+.+++.|..++......+.+. +...+ .++||||+.+..
T Consensus 1 ~~~~Ig~i~~~~~--------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 68 (290)
T 2fn9_A 1 MKGKMAIVISTLN--------NPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTD 68 (290)
T ss_dssp --CEEEEEESCSS--------SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred CceEEEEEeCCCC--------ChHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 4568999874321 112233455667788889998877654433322 22222 469999998653
No 94
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=76.71 E-value=15 Score=30.39 Aligned_cols=88 Identities=13% Similarity=0.225 Sum_probs=48.1
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhH---HHhc--ccCCEEEECCCCCCC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL---FEKL--ELVNGVLYTGGWAKD 132 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l---~~~l--~~~dgvIlpGG~~~~ 132 (250)
.....||++....... ........-+...+.+.+++.|..++......+.+.. .+.+ .++||||+.+....+
T Consensus 6 ~~~~~Igvi~~~~~~~---~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~ 82 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASK---AFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREND 82 (292)
T ss_dssp -CCCEEEEECSSCHHH---HTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTC
T ss_pred CCCCEEEEEecCCccc---cccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh
Confidence 3457899987551000 0011223334556778888899988776544332221 1112 479999998754311
Q ss_pred ccchHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 133 ~~~~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
..++.+.+.+ +|+.-+
T Consensus 83 --------~~~~~l~~~~-----iPvV~~ 98 (292)
T 3k4h_A 83 --------RIIQYLHEQN-----FPFVLI 98 (292)
T ss_dssp --------HHHHHHHHTT-----CCEEEE
T ss_pred --------HHHHHHHHCC-----CCEEEE
Confidence 2345555566 777543
No 95
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=76.55 E-value=16 Score=28.33 Aligned_cols=79 Identities=10% Similarity=0.117 Sum_probs=45.9
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCC-ChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEE
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PIL 159 (250)
+....++..+.+.++..|..+.++.... +.+++...+.++|+||| |.|....... . ..+++.....+-++..+=++
T Consensus 12 GnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~-Gspty~g~~p-~-~~fl~~l~~~~l~gk~v~~f 88 (161)
T 3hly_A 12 GYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVL-GTPPSQPSEA-V-ATALSTIFAAAHNKQAIGLF 88 (161)
T ss_dssp TTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEE-ECCBSSCCHH-H-HHHHHHHHHHCCTTSEEEEE
T ss_pred hHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEE-EcCCcCCchh-H-HHHHHHHHhhhhCCCEEEEE
Confidence 4577788888899999998887776643 34444444567898877 3443322222 1 45555554433334334455
Q ss_pred ccc
Q 025574 160 AHC 162 (250)
Q Consensus 160 GIC 162 (250)
|.|
T Consensus 89 gs~ 91 (161)
T 3hly_A 89 DSY 91 (161)
T ss_dssp CCC
T ss_pred EcC
Confidence 543
No 96
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=76.13 E-value=6.2 Score=32.86 Aligned_cols=77 Identities=5% Similarity=-0.074 Sum_probs=44.4
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHc-CCeEEEeecCC-------------------------ChhhHH
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIYNE-------------------------PEDVLF 114 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~-G~~~v~i~~~~-------------------------~~~~l~ 114 (250)
.++.|.+.|.. .+....+++.+.+.+++. |+++..+.... +.+.+.
T Consensus 3 kIliI~gS~r~--------~s~T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 74 (242)
T 1sqs_A 3 KIFIYAGVRNH--------NSKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIK 74 (242)
T ss_dssp EEEEEECCCCT--------TCHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHH
T ss_pred eEEEEECCCCC--------CChHHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHH
Confidence 46677776642 134556777778888887 99887775431 122333
Q ss_pred HhcccCCEEEECCCCCCCccchHHHHHHHHHH
Q 025574 115 EKLELVNGVLYTGGWAKDGLYYAIVEKVFKKI 146 (250)
Q Consensus 115 ~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~ 146 (250)
+.+..+|+|||. .|.....+....+.+++.+
T Consensus 75 ~~l~~AD~iI~~-sP~y~~~~p~~lK~~iDr~ 105 (242)
T 1sqs_A 75 KELLESDIIIIS-SPVYLQNVSVDTKNFIERI 105 (242)
T ss_dssp HHHHHCSEEEEE-EEECSSSCCHHHHHHHHHT
T ss_pred HHHHHCCEEEEE-ccccccCCCHHHHHHHHHH
Confidence 456789998884 3322222223344555554
No 97
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=75.65 E-value=15 Score=30.00 Aligned_cols=61 Identities=8% Similarity=0.037 Sum_probs=38.1
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhH----HHhc-ccCCEEEECCCC
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dgvIlpGG~ 129 (250)
.+||++..... .....-+...+.+.+++.|..++......+.+.. .... .++||||+.+..
T Consensus 3 ~~Igvi~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 3 RTLGFILPDLE--------NPSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp CEEEEEESCTT--------CHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred eEEEEEeCCCc--------ChhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 57898875422 1122334556777888899999887755443322 1111 469999998765
No 98
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=75.02 E-value=6.1 Score=31.40 Aligned_cols=46 Identities=15% Similarity=0.082 Sum_probs=30.7
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCCCh----------------hhHHHhcccCCEEEEC
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNEPE----------------DVLFEKLELVNGVLYT 126 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~~~----------------~~l~~~l~~~dgvIlp 126 (250)
+....+++.+.+.+++.|+++..+...... +...+.+..+|+|||-
T Consensus 17 g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~g 78 (200)
T 2a5l_A 17 GATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALG 78 (200)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEE
T ss_pred ChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEE
Confidence 346677888888898889888777654310 0112346789998883
No 99
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=74.75 E-value=3 Score=33.73 Aligned_cols=92 Identities=7% Similarity=0.032 Sum_probs=49.7
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHH-HHHcCCeEEEeecCCC--------------hhhHHHhcccCCEEEE
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKF-VESAGARVIPLIYNEP--------------EDVLFEKLELVNGVLY 125 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~-le~~G~~~v~i~~~~~--------------~~~l~~~l~~~dgvIl 125 (250)
.++.|...+.. ......+++.+.+. +++.|+++..+....- .+.+.+.+..+|+|||
T Consensus 4 kilii~gS~r~--------~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~ 75 (197)
T 2vzf_A 4 SIVAISGSPSR--------NSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIV 75 (197)
T ss_dssp EEEEEECCSST--------TCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEE
T ss_pred eEEEEECCCCC--------CChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEE
Confidence 45566665532 13455677767777 8888988887765321 1122345678999888
Q ss_pred CCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccc
Q 025574 126 TGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (250)
Q Consensus 126 pGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGICl 163 (250)
. .|.+...+....+.+++++.. ..-..+|+.-++-
T Consensus 76 ~-sP~y~~~~p~~lK~~ld~l~~--~~~~gK~~~~~~t 110 (197)
T 2vzf_A 76 A-TPIYKASYTGLLKAFLDILPQ--FALAGKAALPLAT 110 (197)
T ss_dssp E-EECBTTBCCHHHHHHHTTSCT--TTTTTCEEEEEEE
T ss_pred E-eCccCCCCCHHHHHHHHhccc--cccCCCEEEEEEE
Confidence 4 333222233334445554321 1222378776554
No 100
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=74.49 E-value=4.5 Score=37.26 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=40.1
Q ss_pred CCCcEEEEeCCCCCC-CCCC-CCCCCcchhhHHHHHHHHHHcCCeEEEeec-CCChhhHHH----hcccCCEEEECCCCC
Q 025574 58 NYRPVIGIVTHPGDG-ASGR-LNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLFE----KLELVNGVLYTGGWA 130 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~-~~~~-~~~~~~~~~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~~----~l~~~dgvIlpGG~~ 130 (250)
..+|.|+|++.-..- ..+. +..+....--...+..++++.|++++.... ..+.+.+.+ .++++|-||.+||-+
T Consensus 175 ~~~~rv~iistGdEl~~~g~~~~~G~i~dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~al~~a~~~~DlvittGG~s 254 (411)
T 1g8l_A 175 IRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVS 254 (411)
T ss_dssp ECCCEEEEEEECTTEECTTSCCCSSCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEECSSSC
T ss_pred cCCCEEEEEEcCccccCCCCCCCCCcEEcCchHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhcCCEEEECCCCC
Confidence 468999998643210 0000 001111111112234578999998764432 234444433 345689999999987
Q ss_pred CC
Q 025574 131 KD 132 (250)
Q Consensus 131 ~~ 132 (250)
..
T Consensus 255 ~g 256 (411)
T 1g8l_A 255 VG 256 (411)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 101
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=74.25 E-value=42 Score=28.93 Aligned_cols=72 Identities=10% Similarity=-0.043 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHcC-CeEEEeecCC---ChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 86 IAASYVKFVESAG-ARVIPLIYNE---PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 86 i~~s~v~~le~~G-~~~v~i~~~~---~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
....+.+.|++.| ++|....... +.+.+.+.|+++|.||+.-... .+.....+.++..++.+ .+++|+
T Consensus 21 ~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~~~~~~---~l~~~~~~~l~~yV~~G-----gglv~~ 92 (281)
T 4e5v_A 21 SHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVVLDYNGD---SWPEETNRRFLEYVQNG-----GGVVIY 92 (281)
T ss_dssp HHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCCTTCSEEEECCCSS---CCCHHHHHHHHHHHHTT-----CEEEEE
T ss_pred HHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhhhcCCEEEEeCCCC---cCCHHHHHHHHHHHHcC-----CCEEEE
Confidence 3445677888888 7776654210 1122223478899999754322 12222333444455667 899999
Q ss_pred cchh
Q 025574 162 CLGF 165 (250)
Q Consensus 162 ClG~ 165 (250)
.-+.
T Consensus 93 H~a~ 96 (281)
T 4e5v_A 93 HAAD 96 (281)
T ss_dssp GGGG
T ss_pred eccc
Confidence 8654
No 102
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=73.54 E-value=6.9 Score=31.63 Aligned_cols=71 Identities=11% Similarity=0.145 Sum_probs=40.6
Q ss_pred CCCCcEEEEeCCCCCCC----C-CCCCCCCcchhhHHHHHHHHHHcCCeEEEee-cCCChhhHH----Hhccc--CCEEE
Q 025574 57 LNYRPVIGIVTHPGDGA----S-GRLNNATNASYIAASYVKFVESAGARVIPLI-YNEPEDVLF----EKLEL--VNGVL 124 (250)
Q Consensus 57 ~~~~PvIGI~~~~~~~~----~-~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~-~~~~~~~l~----~~l~~--~dgvI 124 (250)
...+|.|||++--..-. . |+. .+....+ +..+|++.|++++... ...+.+.+. +.+++ +|-||
T Consensus 12 ~~~~~rv~IittGde~~~~~~~~G~i-~Dsn~~~----L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVi 86 (178)
T 2pjk_A 12 APKSLNFYVITISTSRYEKLLKKEPI-VDESGDI----IKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVII 86 (178)
T ss_dssp -CCCCEEEEEEECHHHHHHHHTTCCC-CCHHHHH----HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEE
T ss_pred CCCCCEEEEEEeCcccccccccCCeE-eehHHHH----HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 45679999987542100 1 111 1222233 3458899999876442 233445443 33444 89999
Q ss_pred ECCCCCCC
Q 025574 125 YTGGWAKD 132 (250)
Q Consensus 125 lpGG~~~~ 132 (250)
.+||-+..
T Consensus 87 ttGG~s~g 94 (178)
T 2pjk_A 87 STGGTGYS 94 (178)
T ss_dssp EESCCSSS
T ss_pred ECCCCCCC
Confidence 99998753
No 103
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=73.36 E-value=30 Score=26.82 Aligned_cols=78 Identities=12% Similarity=0.086 Sum_probs=46.5
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCC--ChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceE
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNE--PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~--~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PI 158 (250)
+....++..+.+.+++.|..+.++.... +.+++...+..+|+|||- .|.....+. . ..+++.....+-++..+=+
T Consensus 16 GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~G-spty~g~~p-~-~~~l~~l~~~~~~~k~va~ 92 (159)
T 3fni_A 16 GYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVIG-MSPAASAAS-I-QGALSTILGSVNEKQAVGI 92 (159)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEEE-CCBTTSHHH-H-HHHHHHHHHHCCTTSEEEE
T ss_pred hHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEEE-cCcCCCCcc-H-HHHHHHHHhhcccCCEEEE
Confidence 4567788888889999999888777654 345554456678988773 444322222 1 3555555444334433445
Q ss_pred Ecc
Q 025574 159 YAH 161 (250)
Q Consensus 159 LGI 161 (250)
+|.
T Consensus 93 fgs 95 (159)
T 3fni_A 93 FET 95 (159)
T ss_dssp ECC
T ss_pred EEc
Confidence 554
No 104
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=71.98 E-value=17 Score=29.88 Aligned_cols=83 Identities=11% Similarity=0.023 Sum_probs=45.7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCCCCCcc
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGL 134 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~~~~~~ 134 (250)
+++||++..... .....-+...+.+.+++.|..+++.....+.+. +...+ .++||||+.+... ..
T Consensus 1 ~~~Igvi~~~~~--------~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~--~~ 70 (271)
T 2dri_A 1 KDTIALVVSTLN--------NPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDS--DA 70 (271)
T ss_dssp CCEEEEEESCSS--------SHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSST--TT
T ss_pred CcEEEEEecCCC--------CHHHHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh--HH
Confidence 468999864321 122333555667788888998877654333322 22222 3689999976432 11
Q ss_pred chHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 135 YYAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 135 ~~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
. ...++.+.+.+ +|+.-+
T Consensus 71 ~----~~~~~~~~~~~-----iPvV~i 88 (271)
T 2dri_A 71 V----GNAVKMANQAN-----IPVITL 88 (271)
T ss_dssp T----HHHHHHHHHTT-----CCEEEE
T ss_pred H----HHHHHHHHHCC-----CcEEEe
Confidence 1 12345555556 776543
No 105
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=71.97 E-value=15 Score=30.57 Aligned_cols=66 Identities=12% Similarity=0.039 Sum_probs=38.2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChh---hHHHhc--ccCCEEEECCCC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED---VLFEKL--ELVNGVLYTGGW 129 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~---~l~~~l--~~~dgvIlpGG~ 129 (250)
....+|||+....... + ....-+...+.+.+++.|..+++.....+.+ .+.+.+ .++||||+.+..
T Consensus 6 ~~s~~Igvv~~~~~~~-----~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 76 (288)
T 3gv0_A 6 GKTNVIALVLSVDEEL-----M-GFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIE 76 (288)
T ss_dssp -CCCEEEEECBCCCCS-----S-CHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCC
T ss_pred CCCCEEEEEecCCccc-----c-HHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCC
Confidence 3457899987543210 1 1223344556677788899888775543222 222223 579999998643
No 106
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=71.86 E-value=15 Score=30.59 Aligned_cols=84 Identities=6% Similarity=-0.033 Sum_probs=47.7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEe-ecCCChhhH----HHhc-ccCCEEEECCCCCCCc
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPL-IYNEPEDVL----FEKL-ELVNGVLYTGGWAKDG 133 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i-~~~~~~~~l----~~~l-~~~dgvIlpGG~~~~~ 133 (250)
+..||++..... .....-+...+.+.+++.|..++.+ ....+.+.. ...+ .++||||+.+....
T Consensus 4 ~~~I~~i~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~-- 73 (305)
T 3g1w_A 4 NETYMMITFQSG--------MDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPV-- 73 (305)
T ss_dssp -CEEEEEESSTT--------STHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTT--
T ss_pred CceEEEEEccCC--------ChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHH--
Confidence 456888765432 1223345566778888899988874 333333222 1111 46999999876431
Q ss_pred cchHHHHHHHHHHHHhCCCCCCceEEccc
Q 025574 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 134 ~~~~~~~~li~~~~~~~~~g~~~PILGIC 162 (250)
. ....++.+.+.+ +|+.-+-
T Consensus 74 ~----~~~~~~~~~~~~-----iPvV~~~ 93 (305)
T 3g1w_A 74 E----LTDTINKAVDAG-----IPIVLFD 93 (305)
T ss_dssp T----THHHHHHHHHTT-----CCEEEES
T ss_pred H----HHHHHHHHHHCC-----CcEEEEC
Confidence 1 123456666667 8876443
No 107
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=71.55 E-value=23 Score=29.67 Aligned_cols=83 Identities=14% Similarity=0.078 Sum_probs=47.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhH----HHh-cccCCEEEECCCCCCCc
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGGWAKDG 133 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dgvIlpGG~~~~~ 133 (250)
....||++..... .....-+...+.+.+++.|..+++.....+.+.. ... -.++||||+.+.....+
T Consensus 14 ~s~~Igvi~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 85 (303)
T 3kke_A 14 RSGTIGLIVPDVN--------NAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDD 85 (303)
T ss_dssp ---CEEEEESCTT--------STTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCH
T ss_pred CCCEEEEEeCCCc--------ChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCcH
Confidence 4467999875422 1223335556778888999998877655443322 111 24699999987654211
Q ss_pred cchHHHHHHHHHHHHhCCCCCCceEEccc
Q 025574 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 134 ~~~~~~~~li~~~~~~~~~g~~~PILGIC 162 (250)
+.++.+.+ + +|+.-+.
T Consensus 86 -------~~~~~l~~-~-----iPvV~i~ 101 (303)
T 3kke_A 86 -------DMLAAVLE-G-----VPAVTIN 101 (303)
T ss_dssp -------HHHHHHHT-T-----SCEEEES
T ss_pred -------HHHHHHhC-C-----CCEEEEC
Confidence 13455545 6 8876553
No 108
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=71.32 E-value=3.7 Score=32.82 Aligned_cols=69 Identities=12% Similarity=0.118 Sum_probs=38.9
Q ss_pred CCCcEEEEeCCCCC-----CCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeec-CCChhhHHHh------cccCCEEEE
Q 025574 58 NYRPVIGIVTHPGD-----GASGRLNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLFEK------LELVNGVLY 125 (250)
Q Consensus 58 ~~~PvIGI~~~~~~-----~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~~~------l~~~dgvIl 125 (250)
..++.|||+|--.. ...|. ..+....|| .++|++.|++++.... ..+.+.+.+. .+++|-||.
T Consensus 13 ~~~~~v~iitvsd~~~~~~~~~g~-i~D~ng~~L----~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVit 87 (178)
T 3iwt_A 13 PKSLNFYVITISTSRYEKLLKKEP-IVDESGDII----KQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIS 87 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCC-CCCHHHHHH----HHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEE
T ss_pred CCCCEEEEEEEcCCCccccccCCC-CCcchHHHH----HHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEe
Confidence 45678999874321 00111 112233444 4589999998864432 2344444322 245899999
Q ss_pred CCCCCC
Q 025574 126 TGGWAK 131 (250)
Q Consensus 126 pGG~~~ 131 (250)
+||-+.
T Consensus 88 tGG~g~ 93 (178)
T 3iwt_A 88 TGGTGY 93 (178)
T ss_dssp ESCCSS
T ss_pred cCCccc
Confidence 999874
No 109
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=70.82 E-value=18 Score=30.15 Aligned_cols=82 Identities=10% Similarity=-0.036 Sum_probs=48.7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCCCCCcc
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGL 134 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~~~~~~ 134 (250)
+..||++..... .....-+...+.+.+++.|..++..... +.+. +...+ .++||||+.+... .
T Consensus 2 ~~~Ig~i~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiii~~~~~---~ 69 (306)
T 8abp_A 2 NLKLGFLVKQPE--------EPWFQTEWKFADKAGKDLGFEVIKIAVP-DGEKTLNAIDSLAASGAKGFVICTPDP---K 69 (306)
T ss_dssp CEEEEEEESCTT--------SHHHHHHHHHHHHHHHHHTEEEEEEECC-SHHHHHHHHHHHHHTTCCEEEEECSCG---G
T ss_pred CeEEEEEeCCCC--------chHHHHHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEeCCCc---h
Confidence 457999875422 1223345566777888899988776543 3332 22222 4689999987532 1
Q ss_pred chHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 135 YYAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 135 ~~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
.....++.+.+.+ +|+.-+
T Consensus 70 ---~~~~~~~~~~~~~-----iPvV~~ 88 (306)
T 8abp_A 70 ---LGSAIVAKARGYD-----MKVIAV 88 (306)
T ss_dssp ---GHHHHHHHHHHTT-----CEEEEE
T ss_pred ---hhHHHHHHHHHCC-----CcEEEe
Confidence 1234566666677 888543
No 110
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=70.50 E-value=15 Score=30.39 Aligned_cols=64 Identities=14% Similarity=0.083 Sum_probs=39.8
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHH---hc--ccCCEEEECCCC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFE---KL--ELVNGVLYTGGW 129 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~---~l--~~~dgvIlpGG~ 129 (250)
.....||++..... .....-+...+.+.+++.|..+++.....+.+...+ .+ .++||||+.+..
T Consensus 6 ~~~~~Igvv~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (291)
T 3egc_A 6 KRSNVVGLIVSDIE--------NVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSE 74 (291)
T ss_dssp -CCCEEEEEESCTT--------SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred CCCcEEEEEECCCc--------chHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 44578999874422 112233455677788889999888776544332211 11 469999998865
No 111
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=70.50 E-value=24 Score=30.24 Aligned_cols=83 Identities=8% Similarity=-0.001 Sum_probs=47.9
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHH----hc-ccCCEEEECCCCCCC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFE----KL-ELVNGVLYTGGWAKD 132 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~----~l-~~~dgvIlpGG~~~~ 132 (250)
.....||++..... .....-+...+.+.+++.|..+++.....+.+...+ .+ .++||||+.+... +
T Consensus 66 ~~~~~Ig~i~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~-~ 136 (344)
T 3kjx_A 66 NRVNLVAVIIPSLS--------NMVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEH-S 136 (344)
T ss_dssp SCCSEEEEEESCSS--------SSSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC-C
T ss_pred CCCCEEEEEeCCCC--------cHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCC-C
Confidence 34568999874422 122333455677778888998877665444432221 12 3699999986543 1
Q ss_pred ccchHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 133 ~~~~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
. ..++.+.+.+ +|+.-+
T Consensus 137 ~-------~~~~~l~~~~-----iPvV~i 153 (344)
T 3kjx_A 137 E-------AARAMLDAAG-----IPVVEI 153 (344)
T ss_dssp H-------HHHHHHHHCS-----SCEEEE
T ss_pred H-------HHHHHHHhCC-----CCEEEE
Confidence 1 2344444556 777654
No 112
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=69.95 E-value=29 Score=29.57 Aligned_cols=64 Identities=14% Similarity=0.010 Sum_probs=38.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHH----Hhc-ccCCEEEECCCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLF----EKL-ELVNGVLYTGGWA 130 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~----~~l-~~~dgvIlpGG~~ 130 (250)
....||++.....+ ....-+...+.+.+++.|..+++.....+.+... ..+ .++||||+.+...
T Consensus 61 ~~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 129 (339)
T 3h5o_A 61 KSRTVLVLIPSLAN--------TVFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSH 129 (339)
T ss_dssp --CEEEEEESCSTT--------CTTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCCEEEEEeCCCCC--------HHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 44689998754221 1223345567788889999988776554433222 111 4699999987543
No 113
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=69.60 E-value=24 Score=29.36 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=37.3
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~ 129 (250)
.....||++..... .....-+...+.+.+++.|..+++.....+.+. +.... .++||||+.+..
T Consensus 14 ~~s~~Igvi~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 82 (289)
T 2fep_A 14 KKTTTVGVIIPDIS--------SIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGN 82 (289)
T ss_dssp --CCEEEEEESCTT--------SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred CCCCeEEEEeCCCC--------CchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 34468999874321 112233445667788889998877654443322 22222 469999998753
No 114
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=68.93 E-value=1.3 Score=35.58 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=31.5
Q ss_pred ccCCEEEECCCCCCC--ccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHH
Q 025574 118 ELVNGVLYTGGWAKD--GLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (250)
Q Consensus 118 ~~~dgvIlpGG~~~~--~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~ 170 (250)
.++|.|++.||-++. +.-.+...++++++++.+ ..|.||| ||-|..
T Consensus 83 ~~~D~vVllGGLAMPk~~v~~e~v~~li~ki~~~~-----~kiiGvC--Fms~F~ 130 (157)
T 2r47_A 83 GNVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEG-----GELMGLC--YMDMFA 130 (157)
T ss_dssp CCEEEEEEEGGGGSTTTSCCHHHHHHHHHHHEEEE-----EEEEEEE--ETTHHH
T ss_pred CCCCEEEEeccccCCCCCCCHHHHHHHHHHhhcCC-----CCEEEEE--hHHHHH
Confidence 468899999998752 222334567788876556 7899999 444444
No 115
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=68.65 E-value=1.7 Score=34.73 Aligned_cols=69 Identities=12% Similarity=0.137 Sum_probs=36.2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHH----HHHcCCeEEEee-cCCChhhHH----Hhcc-cCCEEEECC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKF----VESAGARVIPLI-YNEPEDVLF----EKLE-LVNGVLYTG 127 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~----le~~G~~~v~i~-~~~~~~~l~----~~l~-~~dgvIlpG 127 (250)
.+.|.++|++--..-..|+. .+....++. ++ |++.|++++... ...+.+.+. +.++ .+|-||.+|
T Consensus 3 ~m~~~v~Ii~~GdEl~~G~i-~D~n~~~l~----~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVittG 77 (167)
T 2g2c_A 3 AMHIKSAIIVVSDRISTGTR-ENKALPLLQ----RLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAG 77 (167)
T ss_dssp -CEEEEEEEEECHHHHHTSS-CCCHHHHHH----HHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEES
T ss_pred CCccEEEEEEECCcccCCce-eccHHHHHH----HhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEECC
Confidence 46688998864422111221 223334443 46 889998775332 223444443 3344 489999999
Q ss_pred CCCC
Q 025574 128 GWAK 131 (250)
Q Consensus 128 G~~~ 131 (250)
|-+.
T Consensus 78 G~g~ 81 (167)
T 2g2c_A 78 GTGI 81 (167)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 9875
No 116
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=67.58 E-value=11 Score=33.63 Aligned_cols=82 Identities=10% Similarity=0.112 Sum_probs=45.2
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhc-ccCCEEEECCCCCCCccc
Q 025574 57 LNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKL-ELVNGVLYTGGWAKDGLY 135 (250)
Q Consensus 57 ~~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l-~~~dgvIlpGG~~~~~~~ 135 (250)
.....+|||+. +.. .....-+...+.+.+++.|..+.+.......+.+.... .++||||+.. . +
T Consensus 22 ~~~s~~Igvv~-~~~--------~~f~~~l~~gi~~~a~~~g~~~~i~~~~~~~~~i~~l~~~~vDGiIi~~--~-~--- 86 (412)
T 4fe7_A 22 FTKRHRITLLF-NAN--------KAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIADF--D-D--- 86 (412)
T ss_dssp CCCCEEEEEEC-CTT--------SHHHHHHHHHHHHHHHHHTCCEEEEECC-CC--------CCCSEEEEET--T-C---
T ss_pred CCCCceEEEEe-CCc--------chhhHHHHHHHHHHHHhcCCCeEEEecCCccchhhhHhcCCCCEEEEec--C-C---
Confidence 34557999998 321 12223355567778888899887776443333333222 3699999931 1 1
Q ss_pred hHHHHHHHHHHHHhCCCCCCceEEccc
Q 025574 136 YAIVEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 136 ~~~~~~li~~~~~~~~~g~~~PILGIC 162 (250)
..+++.+.+.+ +|+.-+.
T Consensus 87 ----~~~~~~l~~~~-----iPvV~i~ 104 (412)
T 4fe7_A 87 ----KQIEQALADVD-----VPIVGVG 104 (412)
T ss_dssp ----HHHHHHHTTCC-----SCEEEEE
T ss_pred ----hHHHHHHhhCC-----CCEEEec
Confidence 13455554556 8887553
No 117
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=67.45 E-value=35 Score=29.00 Aligned_cols=66 Identities=9% Similarity=0.025 Sum_probs=39.3
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhH----HHhc-ccCCEEEECCCC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dgvIlpGG~ 129 (250)
.....||++...... ......-+...+.+.+++.|..+++.....+.+.. .... .++||||+.+..
T Consensus 59 ~~~~~Igvi~~~~~~------~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 129 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLY------HGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRF 129 (338)
T ss_dssp -CCSEEEEEECTTTT------STTHHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCCCEEEEEecCCcc------cChhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 345689998754100 11223335566778888999998877654443322 1111 479999998754
No 118
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=67.42 E-value=4.3 Score=37.44 Aligned_cols=70 Identities=20% Similarity=0.351 Sum_probs=40.0
Q ss_pred CCCcEEEEeCCCCC------C-CCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeec-CCChhhHH----HhcccCCEEEE
Q 025574 58 NYRPVIGIVTHPGD------G-ASGRLNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLF----EKLELVNGVLY 125 (250)
Q Consensus 58 ~~~PvIGI~~~~~~------~-~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~----~~l~~~dgvIl 125 (250)
..+|.|+|++.-.. . ..|+. .+....+ +..+|++.|++++.... ..+.+.+. +.++++|-||.
T Consensus 179 ~~~prv~IistGdEl~~~g~~~~~G~i-~dsN~~~----L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVit 253 (419)
T 2fts_A 179 NKFPVVAVMSTGNELLNPEDDLLPGKI-RDSNRST----LLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIIT 253 (419)
T ss_dssp ECCCCEEEEEECTTEECTTSCCCTTCE-ECCHHHH----HHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHHCSEEEE
T ss_pred cCCCEEEEEEechhccCCCCCCCCCcE-ecCchHH----HHHHHHHCCCEEEEEeecCCCHHHHHHHHHHHHhcCCEEEE
Confidence 46899999864311 0 01221 1122233 34588899998764432 23444443 33456899999
Q ss_pred CCCCCCC
Q 025574 126 TGGWAKD 132 (250)
Q Consensus 126 pGG~~~~ 132 (250)
+||-+..
T Consensus 254 tGG~s~g 260 (419)
T 2fts_A 254 SGGVSMG 260 (419)
T ss_dssp ESCCSSS
T ss_pred cCCCcCC
Confidence 9998753
No 119
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=67.27 E-value=3 Score=33.76 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=37.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHH---HcCCeEEEeecCCChhhHH----Hhcc--cCCEEEECCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVE---SAGARVIPLIYNEPEDVLF----EKLE--LVNGVLYTGGW 129 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le---~~G~~~v~i~~~~~~~~l~----~~l~--~~dgvIlpGG~ 129 (250)
.+|.++|++--..-..|.. .+....++. .+|+ +.|+++.......+.+.+. +.++ ++|-||.+||-
T Consensus 4 ~~~rv~IistGdE~~~G~i-~Dsn~~~l~----~~l~~l~~~G~~v~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~ 78 (178)
T 2pbq_A 4 KKAVIGVVTISDRASKGIY-EDISGKAII----DYLKDVIITPFEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGGT 78 (178)
T ss_dssp -CCEEEEEEECHHHHHTSS-CCHHHHHHH----HHHHHHBCSCCEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CCCEEEEEEeCCcCCCCCe-ecchHHHHH----HHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 4688999874321111211 122333333 4566 7898773323334444443 3344 68999999998
Q ss_pred CC
Q 025574 130 AK 131 (250)
Q Consensus 130 ~~ 131 (250)
+.
T Consensus 79 g~ 80 (178)
T 2pbq_A 79 GP 80 (178)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 120
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=67.25 E-value=24 Score=29.98 Aligned_cols=85 Identities=7% Similarity=-0.049 Sum_probs=48.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-cc--CCEEEECCCCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-EL--VNGVLYTGGWAK 131 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~--~dgvIlpGG~~~ 131 (250)
...+||++..... .....-+...+.+.+++.|..+++.....+.+. +...+ .+ +||||+.+...
T Consensus 4 ~s~~Igvi~~~~~--------~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~- 74 (332)
T 2rjo_A 4 GQTTLACSFRSLT--------NPYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDS- 74 (332)
T ss_dssp CCCEEEEEESCTT--------SHHHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSH-
T ss_pred CccEEEEEecCCC--------cHHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCH-
Confidence 3458999874321 112223445667788889998887754443322 22222 46 99999976532
Q ss_pred CccchHHHHHHHHHHHHhCCCCCCceEEccc
Q 025574 132 DGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 132 ~~~~~~~~~~li~~~~~~~~~g~~~PILGIC 162 (250)
. .....++.+.+.+ +|+.-+.
T Consensus 75 --~---~~~~~~~~~~~~~-----iPvV~~~ 95 (332)
T 2rjo_A 75 --A---DARVIVEACSKAG-----AYVTTIW 95 (332)
T ss_dssp --H---HHHHHHHHHHHHT-----CEEEEES
T ss_pred --H---HHHHHHHHHHHCC-----CeEEEEC
Confidence 1 1224456665667 8876553
No 121
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=66.80 E-value=24 Score=29.25 Aligned_cols=83 Identities=7% Similarity=-0.082 Sum_probs=46.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChh-------hHHHhc-ccCCEEEECCCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED-------VLFEKL-ELVNGVLYTGGWA 130 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~-------~l~~~l-~~~dgvIlpGG~~ 130 (250)
....||++..... .....-+...+.+.+++.|..+.+.....+.+ .+.... .++||||+.+...
T Consensus 7 ~~~~Ig~i~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 78 (290)
T 2rgy_A 7 QLGIIGLFVPTFF--------GSYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDL 78 (290)
T ss_dssp -CCEEEEECSCSC--------SHHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSS
T ss_pred CCCeEEEEeCCCC--------CchHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCC
Confidence 3468999874321 11222344556778888999887665433222 222222 4699999987543
Q ss_pred CCccchHHHHHHHHHHHHhCCCCCCceEEccc
Q 025574 131 KDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 131 ~~~~~~~~~~~li~~~~~~~~~g~~~PILGIC 162 (250)
+. ..++.+.+.+ +|+.-+.
T Consensus 79 -~~-------~~~~~l~~~~-----iPvV~~~ 97 (290)
T 2rgy_A 79 -HD-------EDLDELHRMH-----PKMVFLN 97 (290)
T ss_dssp -CH-------HHHHHHHHHC-----SSEEEES
T ss_pred -CH-------HHHHHHhhcC-----CCEEEEc
Confidence 11 2344444556 7876553
No 122
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=66.77 E-value=11 Score=30.61 Aligned_cols=64 Identities=9% Similarity=-0.007 Sum_probs=41.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC--ChhhHHHhcccCCEEEEC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--PEDVLFEKLELVNGVLYT 126 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~--~~~~l~~~l~~~dgvIlp 126 (250)
...+..|.++|....+ .+....-+++.+++.+++.|+++..+.... +.+.+.+.+..+|+|||.
T Consensus 12 ~~~iLii~gsP~~~~s----~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~ 77 (204)
T 2amj_A 12 SSNILIINGAKKFAHS----NGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQ 77 (204)
T ss_dssp CCEEEEEECCC----------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEE
T ss_pred CcCEEEEEcCCCcccC----cCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEE
Confidence 4567888888863210 112344567778888888899998887653 344556678889998884
No 123
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=66.72 E-value=28 Score=28.59 Aligned_cols=63 Identities=10% Similarity=0.074 Sum_probs=36.9
Q ss_pred CCcEEEEeCCC--CCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCC
Q 025574 59 YRPVIGIVTHP--GDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 59 ~~PvIGI~~~~--~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~ 129 (250)
....||++... .. + ....-+...+.+.+++.|..+++.....+.+. +...+ .++||||+.+..
T Consensus 18 ~~~~Ig~i~~~~~~~-------~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 87 (296)
T 3brq_A 18 STQTLGLVVTNTLYH-------G-IYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRF 87 (296)
T ss_dssp -CCEEEEEECGGGCC----------CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CCceEEEEeCCcccC-------C-chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 45689998743 11 1 12233455667788889998877654433322 22222 469999998653
No 124
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=66.67 E-value=21 Score=30.83 Aligned_cols=82 Identities=10% Similarity=0.088 Sum_probs=47.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHh----c-ccCCEEEECCCCCCCc
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEK----L-ELVNGVLYTGGWAKDG 133 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~----l-~~~dgvIlpGG~~~~~ 133 (250)
....||++..... + ....-+...+.+.+++.|..+++.....+.+...+. + .++||||+.+... ..
T Consensus 69 ~~~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~-~~ 139 (355)
T 3e3m_A 69 RSGFVGLLLPSLN-------N-LHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGH-TE 139 (355)
T ss_dssp --CEEEEEESCSB-------C-HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCC-CH
T ss_pred CCCEEEEEeCCCC-------c-hHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCC-CH
Confidence 3468999874321 1 122234456677888899998877654443322211 1 4799999987543 11
Q ss_pred cchHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 134 LYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 134 ~~~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
..++.+.+.+ +|+.-+
T Consensus 140 -------~~~~~l~~~~-----iPvV~i 155 (355)
T 3e3m_A 140 -------QTIRLLQRAS-----IPIVEI 155 (355)
T ss_dssp -------HHHHHHHHCC-----SCEEEE
T ss_pred -------HHHHHHHhCC-----CCEEEE
Confidence 2345555566 887655
No 125
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=66.43 E-value=28 Score=28.69 Aligned_cols=82 Identities=13% Similarity=0.076 Sum_probs=44.4
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCCCCCccc
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLY 135 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~~~~~~~ 135 (250)
..||++..... .....-+...+.+.+++.|..+++.....+.+. +...+ .++||||+.+... ...
T Consensus 2 ~~Igvi~~~~~--------~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~--~~~ 71 (283)
T 2ioy_A 2 KTIGLVISTLN--------NPFFVTLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDS--DAV 71 (283)
T ss_dssp CEEEEEESCSS--------SHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSST--TTT
T ss_pred eEEEEEecCCC--------CHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCch--hhh
Confidence 47888763321 112233455566778888998877654333322 22222 4699999976422 111
Q ss_pred hHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 136 YAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 136 ~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
...++.+.+.+ +|+.-+
T Consensus 72 ----~~~~~~~~~~~-----iPvV~~ 88 (283)
T 2ioy_A 72 ----VTAIKEANSKN-----IPVITI 88 (283)
T ss_dssp ----HHHHHHHHHTT-----CCEEEE
T ss_pred ----HHHHHHHHHCC-----CeEEEe
Confidence 12345555556 776543
No 126
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=66.27 E-value=14 Score=30.38 Aligned_cols=81 Identities=12% Similarity=0.114 Sum_probs=46.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHH---Hhc--ccCCEEEECCCCCCCc
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLF---EKL--ELVNGVLYTGGWAKDG 133 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~---~~l--~~~dgvIlpGG~~~~~ 133 (250)
....||++..... .....-+...+.+.+++.|..+++.....+.+... +.+ .++||||+.+. +
T Consensus 7 ~~~~Ig~i~~~~~--------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~---~- 74 (277)
T 3e61_A 7 KSKLIGLLLPDMS--------NPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAF---N- 74 (277)
T ss_dssp ---CEEEEESCTT--------SHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGG---G-
T ss_pred CCCEEEEEECCCC--------CHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC---C-
Confidence 3467999874321 11223345567778888999988876654433221 111 47999999871 1
Q ss_pred cchHHHHHHHH-HHHHhCCCCCCceEEccc
Q 025574 134 LYYAIVEKVFK-KILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 134 ~~~~~~~~li~-~~~~~~~~g~~~PILGIC 162 (250)
...++ .+.+.+ +|+.-+-
T Consensus 75 ------~~~~~~~l~~~~-----iPvV~~~ 93 (277)
T 3e61_A 75 ------ENIIENTLTDHH-----IPFVFID 93 (277)
T ss_dssp ------HHHHHHHHHHC------CCEEEGG
T ss_pred ------hHHHHHHHHcCC-----CCEEEEe
Confidence 12355 565666 8887653
No 127
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=65.63 E-value=13 Score=31.03 Aligned_cols=88 Identities=13% Similarity=0.031 Sum_probs=52.9
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC--ChhhHHHhcccCCEEEECCCCCCCccc
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--PEDVLFEKLELVNGVLYTGGWAKDGLY 135 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~--~~~~l~~~l~~~dgvIlpGG~~~~~~~ 135 (250)
.|+.++.|.++|..... .+....-+.+.+.+.+++.|.++..+..+. +.+...+.+..+|+||+. -|..-..+
T Consensus 24 ~M~kiLiI~gsp~~~~s----~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~~-~P~y~~~~ 98 (218)
T 3rpe_A 24 AMSNVLIINAMKEFAHS----KGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQ-MPAWWMGE 98 (218)
T ss_dssp CCCCEEEEECCCCBTTB----CSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEEE-EECBTTBC
T ss_pred cCcceEEEEeCCCcccC----CChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEEE-CChHhccC
Confidence 35678889999863210 112233455667788888899988887653 344445668889999885 22211122
Q ss_pred hHHHHHHHHHHHHhC
Q 025574 136 YAIVEKVFKKILEKN 150 (250)
Q Consensus 136 ~~~~~~li~~~~~~~ 150 (250)
....+.+++.++..+
T Consensus 99 p~~lK~~iD~v~~~g 113 (218)
T 3rpe_A 99 PWILKKYIDEVFTDG 113 (218)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhcC
Confidence 234456677666554
No 128
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=65.13 E-value=16 Score=29.89 Aligned_cols=82 Identities=13% Similarity=0.106 Sum_probs=45.5
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCCCCCcc
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGL 134 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~~~~~~ 134 (250)
..+||++..... + ....-+...+.+.+++.|..++......+.+. +.... .++||||+.+... +.
T Consensus 3 s~~Ig~i~~~~~-------~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~-~~- 72 (275)
T 3d8u_A 3 AYSIALIIPSLF-------E-KACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEH-SQ- 72 (275)
T ss_dssp -CEEEEEESCSS-------C-HHHHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSCC-CH-
T ss_pred ceEEEEEeCCCc-------c-ccHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC-CH-
Confidence 357999874321 1 12223445566788889998876654433322 22222 4699999987543 11
Q ss_pred chHHHHHHHHHHHHhCCCCCCceEEccc
Q 025574 135 YYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 135 ~~~~~~~li~~~~~~~~~g~~~PILGIC 162 (250)
..++.+.+.+ +|+.-+.
T Consensus 73 ------~~~~~l~~~~-----iPvV~~~ 89 (275)
T 3d8u_A 73 ------RTHQLLEASN-----TPVLEIA 89 (275)
T ss_dssp ------HHHHHHHHHT-----CCEEEES
T ss_pred ------HHHHHHHhCC-----CCEEEEe
Confidence 2344454556 7876543
No 129
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=65.00 E-value=35 Score=28.49 Aligned_cols=61 Identities=7% Similarity=-0.054 Sum_probs=35.7
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCC
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~ 129 (250)
.+||++..... .....-+...+.+.+++.|..+++.....+.+. +...+ .++||||+.+..
T Consensus 3 ~~Ig~i~~~~~--------~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 68 (306)
T 2vk2_A 3 LTVGFSQVGSE--------SGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVV 68 (306)
T ss_dssp CEEEEEECCCC--------SHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred eEEEEEeCCCC--------CHHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 47899875421 112222344566778889998877654433332 22222 469999998754
No 130
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=65.00 E-value=4 Score=33.43 Aligned_cols=70 Identities=13% Similarity=0.121 Sum_probs=38.2
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHH---cCCeEEEee-cCCChhhHH----Hhcc--cCCEEEEC
Q 025574 57 LNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVES---AGARVIPLI-YNEPEDVLF----EKLE--LVNGVLYT 126 (250)
Q Consensus 57 ~~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~---~G~~~v~i~-~~~~~~~l~----~~l~--~~dgvIlp 126 (250)
...+|.++|++--..-..|.. .+....+ +..+|++ .|++++... ...+.+.+. +.++ ++|-||.+
T Consensus 11 v~~~~rv~IistGdEl~~g~~-~D~n~~~----L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVItt 85 (189)
T 1jlj_A 11 HDHQIRVGVLTVSDSCFRNLA-EDRSGIN----LKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTT 85 (189)
T ss_dssp --CCCEEEEEEECHHHHTTSS-CCHHHHH----HHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred ccCCCEEEEEEECCccCCCcc-cchHHHH----HHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEc
Confidence 356789999875421111111 1222233 3357777 798776432 233444443 3334 68999999
Q ss_pred CCCCC
Q 025574 127 GGWAK 131 (250)
Q Consensus 127 GG~~~ 131 (250)
||-+.
T Consensus 86 GGtg~ 90 (189)
T 1jlj_A 86 GGTGF 90 (189)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 99875
No 131
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=64.91 E-value=34 Score=28.26 Aligned_cols=62 Identities=11% Similarity=0.041 Sum_probs=37.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhH----HHhc-ccCCEEEECCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGG 128 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dgvIlpGG 128 (250)
....||++..... .....-+...+.+.+++.|..+++.....+.+.. .... .++||||+.+.
T Consensus 7 ~~~~Igvi~~~~~--------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (285)
T 3c3k_A 7 KTGMLLVMVSNIA--------NPFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDA 73 (285)
T ss_dssp CCCEEEEEESCTT--------SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCC
T ss_pred CCCEEEEEeCCCC--------CchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4468999874321 1122234456677888899988776654443321 1212 46999999865
No 132
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=64.86 E-value=26 Score=29.73 Aligned_cols=83 Identities=12% Similarity=0.069 Sum_probs=45.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHc-CCeEEEeecCCChhh----HHHhc-ccCCEEEECCCCCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKD 132 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~-G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~~~~ 132 (250)
...+||++... . . .....+...+.+.+++. |..+++.....+.+. +...+ .++||||+.+...
T Consensus 5 ~~~~Igvi~~~-~-~-------~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~-- 73 (325)
T 2x7x_A 5 PHFRIGVAQCS-D-D-------SWRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEA-- 73 (325)
T ss_dssp -CCEEEEEESC-C-S-------HHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSH--
T ss_pred CCeEEEEEecC-C-C-------HHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCH--
Confidence 45689998743 1 1 12223444556677777 888877654433322 22222 4699999986432
Q ss_pred ccchHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 133 ~~~~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
. .....++.+.+.+ +|+.-+
T Consensus 74 -~---~~~~~~~~~~~~~-----iPvV~~ 93 (325)
T 2x7x_A 74 -A---PMTPIVEEAYQKG-----IPVILV 93 (325)
T ss_dssp -H---HHHHHHHHHHHTT-----CCEEEE
T ss_pred -H---HHHHHHHHHHHCC-----CeEEEe
Confidence 1 1123455555556 787543
No 133
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=64.66 E-value=30 Score=28.65 Aligned_cols=84 Identities=13% Similarity=0.006 Sum_probs=47.5
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCC-eEEEeecCCChhh----HHHhc-ccCCEEEECCCCCCCcc
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA-RVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGL 134 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~-~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~~~~~~ 134 (250)
.+||++..... .....-+...+.+.+++.|. .++......+.+. +...+ .++||||+.+... .
T Consensus 3 ~~Igvi~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~---~ 71 (309)
T 2fvy_A 3 TRIGVTIYKYD--------DNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDP---A 71 (309)
T ss_dssp EEEEEEESCTT--------SHHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSG---G
T ss_pred cEEEEEeccCC--------cHHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCc---c
Confidence 47898864321 11223345566778888897 7776654433322 22222 4699999976432 1
Q ss_pred chHHHHHHHHHHHHhCCCCCCceEEcccc
Q 025574 135 YYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (250)
Q Consensus 135 ~~~~~~~li~~~~~~~~~g~~~PILGICl 163 (250)
.....++.+.+.+ +|+.-+..
T Consensus 72 ---~~~~~~~~~~~~~-----iPvV~~~~ 92 (309)
T 2fvy_A 72 ---AAGTVIEKARGQN-----VPVVFFNK 92 (309)
T ss_dssp ---GHHHHHHHHHTTT-----CCEEEESS
T ss_pred ---hhHHHHHHHHHCC-----CcEEEecC
Confidence 1123456665566 89876543
No 134
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=63.93 E-value=38 Score=27.94 Aligned_cols=65 Identities=15% Similarity=0.043 Sum_probs=36.5
Q ss_pred CcEEEEeCCC-CCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCCh----hhHHHhc-ccCCEEEECCCC
Q 025574 60 RPVIGIVTHP-GDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE----DVLFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 60 ~PvIGI~~~~-~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~----~~l~~~l-~~~dgvIlpGG~ 129 (250)
...||++... ..+. ......-+...+.+.+++.|..+++.....+. +.+.... .++||||+.+..
T Consensus 4 s~~Ig~i~~~~~~~~-----~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQ-----VNHILDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSIN 74 (287)
T ss_dssp CCEEEECCCCCCTTC-----SCCTHHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCC
T ss_pred eeEEEEEeccccccc-----CChhHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecC
Confidence 4589998743 2000 01222334556777888899988765433221 1222222 469999998754
No 135
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=63.66 E-value=20 Score=27.17 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcc--cCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLE--LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~--~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
..+.++++..-..+++++-+. .+.+...++ ++-+|||+||-..++ .+++.|.+.+ +||+-+=+..
T Consensus 42 ~~~~~~~~~~~~~l~I~~G~r-~~~~l~a~~~~~~~~iIlt~g~~~~~-------~i~~~A~~~~-----ipvl~t~~~T 108 (139)
T 2ioj_A 42 QSALRYLREARNAALVTGGDR-SDLLLTALEMPNVRCLILTGNLEPVQ-------LVLTKAEERG-----VPVILTGHDT 108 (139)
T ss_dssp HHHHHHHHTCSSEEEEEETTC-HHHHHHHTTCTTEEEEEEETTCCCCH-------HHHHHHHHHT-----CCEEECSSCH
T ss_pred HHHHHHHhcCCCEEEEEcCCH-HHHHHHHHhCCCCcEEEEcCCCCCCH-------HHHHHHHHCC-----CeEEEECCCH
Confidence 345566664323466665443 333333343 677999999976432 5667777788 9999988776
Q ss_pred HHHHHHh
Q 025574 166 ELLTMII 172 (250)
Q Consensus 166 QlL~~~~ 172 (250)
--.+...
T Consensus 109 ~~~~~~l 115 (139)
T 2ioj_A 109 LTAVSRL 115 (139)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 136
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=63.38 E-value=22 Score=29.76 Aligned_cols=88 Identities=13% Similarity=0.137 Sum_probs=47.2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh---HHHhc--ccCCEEEECCCCCCC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV---LFEKL--ELVNGVLYTGGWAKD 132 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~---l~~~l--~~~dgvIlpGG~~~~ 132 (250)
.....||++....... ........-+...+.+.+++.|..+++.....+.+. +.+.+ .++||||+.+....+
T Consensus 20 ~~~~~Igvi~~~~~~~---~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 96 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPE---IRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDD 96 (305)
T ss_dssp -CCCEEEEECSCCSHH---HHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTC
T ss_pred CCCCEEEEEeCCCccc---cccCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCCc
Confidence 3457899987541000 001112233455677788889998887654433222 11112 469999998764311
Q ss_pred ccchHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 133 ~~~~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
..++.+.+.+ +|+.-+
T Consensus 97 --------~~~~~l~~~~-----iPvV~i 112 (305)
T 3huu_A 97 --------PIEHLLNEFK-----VPYLIV 112 (305)
T ss_dssp --------HHHHHHHHTT-----CCEEEE
T ss_pred --------HHHHHHHHcC-----CCEEEE
Confidence 2344454556 777544
No 137
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=63.27 E-value=27 Score=25.93 Aligned_cols=59 Identities=8% Similarity=0.164 Sum_probs=38.5
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHH-HHHHHHHHcCCeEEE-------eecCCChhhHHHhcccCCEEEECCCCCC
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAA-SYVKFVESAGARVIP-------LIYNEPEDVLFEKLELVNGVLYTGGWAK 131 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~-s~v~~le~~G~~~v~-------i~~~~~~~~l~~~l~~~dgvIlpGG~~~ 131 (250)
..+++|+..|.. -...|+++ .+.++-++.|.++.+ +....+.++ ++.+|+||+-+.-..
T Consensus 3 ~kivaVTaCptG---------iAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~----I~~Ad~VIiA~d~~v 69 (106)
T 2r4q_A 3 AKILAVTACPTG---------IAHTFMAADALKEKAKELGVEIKVETNGSSGIKHKLTAQE----IEDAPAIIVAADKQV 69 (106)
T ss_dssp CCEEEEEECSCC-----------CHHHHHHHHHHHHHHHTCCEEEEEEETTEEESCCCHHH----HHHCSCEEEEESSCC
T ss_pred ceEEEEecCCCc---------HHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHH----HHhCCEEEEEeCCcc
Confidence 468999998853 34567765 455677888987655 222224443 567899999987654
No 138
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=62.74 E-value=40 Score=28.61 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=37.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~ 129 (250)
....||++..... .....-+...+.+.+++.|..+++.....+.+. +.... .++||||+.+..
T Consensus 62 ~~~~Ig~i~~~~~--------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 129 (332)
T 2o20_A 62 RTTTVGVILPTIT--------STYFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSS 129 (332)
T ss_dssp CCCEEEEEESCTT--------CHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSSC
T ss_pred CCCEEEEEeCCCC--------CcHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 4468999874311 112223445566778889998877655444322 22222 469999998753
No 139
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=62.67 E-value=19 Score=30.08 Aligned_cols=70 Identities=11% Similarity=0.106 Sum_probs=38.3
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh---HHHhc--ccCCEEEECCCCC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV---LFEKL--ELVNGVLYTGGWA 130 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~---l~~~l--~~~dgvIlpGG~~ 130 (250)
.....|||+........ . ......-+...+.+.+++.|..+++.....+.+. +.+.+ .++||||+.+...
T Consensus 5 ~~s~~Igvi~~~~~~~~--~-~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~ 79 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPI--R-LNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKE 79 (295)
T ss_dssp CCSCEEEEECSCCCHHH--H-SCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCT
T ss_pred CCCcEEEEEeecCCccc--c-cChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCccc
Confidence 34568999874311000 0 1112233455667788888998877654433221 11122 4799999987543
No 140
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=62.23 E-value=16 Score=33.49 Aligned_cols=69 Identities=13% Similarity=0.231 Sum_probs=38.3
Q ss_pred CCCcEEEEeCCCCCC-------CCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeec-CCChhhHH----HhcccCCEEEE
Q 025574 58 NYRPVIGIVTHPGDG-------ASGRLNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLF----EKLELVNGVLY 125 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~-------~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~----~~l~~~dgvIl 125 (250)
..+|.|+|++.-..- ..|+. .+....+ +..+|++.|++++.... ..+.+.+. +.++++|-||.
T Consensus 178 ~~~prv~IistGdEl~~~g~~~~~G~i-~DsN~~~----L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVit 252 (402)
T 1uz5_A 178 FRKPKVAVISTGNEIVPPGNELKPGQI-YDINGRA----LCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVI 252 (402)
T ss_dssp ECCCEEEEEEECTTEECTTSCCCTTCE-ECCHHHH----HHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEE
T ss_pred cCCCEEEEEEcCccccCCCCCCCCCcE-EcchHHH----HHHHHHhCCCeEEEEEEeCCCHHHHHHHHHHHhhCCCEEEE
Confidence 468999998643211 11211 1122222 34578889998764432 23444443 33456899999
Q ss_pred CCCCCC
Q 025574 126 TGGWAK 131 (250)
Q Consensus 126 pGG~~~ 131 (250)
+||-+.
T Consensus 253 tGG~s~ 258 (402)
T 1uz5_A 253 SGGASG 258 (402)
T ss_dssp ECCC--
T ss_pred cCCCCC
Confidence 999875
No 141
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=62.07 E-value=3.1 Score=33.06 Aligned_cols=42 Identities=10% Similarity=0.024 Sum_probs=27.1
Q ss_pred HHHHHHcCCeEEEee-cCCChhhHH----Hhcc--cCCEEEECCCCCCC
Q 025574 91 VKFVESAGARVIPLI-YNEPEDVLF----EKLE--LVNGVLYTGGWAKD 132 (250)
Q Consensus 91 v~~le~~G~~~v~i~-~~~~~~~l~----~~l~--~~dgvIlpGG~~~~ 132 (250)
..+|++.|++++... ...+.+.+. +.++ ++|-||.+||-+..
T Consensus 27 ~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g 75 (164)
T 2is8_A 27 REVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLA 75 (164)
T ss_dssp HHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred HHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCC
Confidence 357888998776432 233444443 3344 68999999998753
No 142
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=61.81 E-value=36 Score=25.26 Aligned_cols=59 Identities=14% Similarity=0.262 Sum_probs=39.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHH-HHHHHHHHcCCeEEE-------eecCCChhhHHHhcccCCEEEECCCCCC
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAA-SYVKFVESAGARVIP-------LIYNEPEDVLFEKLELVNGVLYTGGWAK 131 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~-s~v~~le~~G~~~v~-------i~~~~~~~~l~~~l~~~dgvIlpGG~~~ 131 (250)
+.+++|+..|.. -...|+++ .+.++-++.|.++.+ +....+.++ ++.+|+||+-+.-..
T Consensus 3 ~kivaVTaCptG---------iAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~----I~~Ad~VIiA~d~~v 69 (106)
T 2r48_A 3 AKLLAITSCPNG---------IAHTYMAAENLQKAADRLGVSIKVETQGGIGVENKLTEEE----IREADAIIIAADRSV 69 (106)
T ss_dssp CEEEEEEECSSC---------SHHHHHHHHHHHHHHHHHTCEEEEEEEETTEEESCCCHHH----HHHCSEEEEEESSCC
T ss_pred ceEEEEecCCCc---------HHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHH----HHhCCEEEEEeCCcc
Confidence 368999998843 34677765 455677788987655 222224443 567899999987654
No 143
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=60.69 E-value=39 Score=28.57 Aligned_cols=84 Identities=5% Similarity=-0.073 Sum_probs=47.0
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEe-ecCCChhh----HHHhc-ccCCEEEECCCCCCCc
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPL-IYNEPEDV----LFEKL-ELVNGVLYTGGWAKDG 133 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i-~~~~~~~~----l~~~l-~~~dgvIlpGG~~~~~ 133 (250)
...||++..... .....-+...+.+.+++.|.+++.. +...+.+. +...+ +++||||+.+... .
T Consensus 3 ~~~Igvi~~~~~--------~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~--~ 72 (316)
T 1tjy_A 3 AERIAFIPKLVG--------VGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSP--D 72 (316)
T ss_dssp CCEEEEECSSSS--------SHHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSS--S
T ss_pred CCEEEEEeCCCC--------ChHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCH--H
Confidence 358999874321 1122334556677788899888765 22233221 22222 4699999976432 1
Q ss_pred cchHHHHHHHHHHHHhCCCCCCceEEccc
Q 025574 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 134 ~~~~~~~~li~~~~~~~~~g~~~PILGIC 162 (250)
. ....++.+.+.+ +|+.-+-
T Consensus 73 ~----~~~~~~~a~~~g-----ipvV~~d 92 (316)
T 1tjy_A 73 G----LCPALKRAMQRG-----VKILTWD 92 (316)
T ss_dssp T----THHHHHHHHHTT-----CEEEEES
T ss_pred H----HHHHHHHHHHCc-----CEEEEec
Confidence 1 123456666667 8876543
No 144
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=60.17 E-value=33 Score=28.37 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=37.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~ 129 (250)
....||++..... .....-+...+.+.+++.|..+.......+.+. +.... .++||||+.+..
T Consensus 19 ~~~~Ig~i~~~~~--------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 86 (293)
T 2iks_A 19 RTRSIGLVIPDLE--------NTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSL 86 (293)
T ss_dssp CCCEEEEEESCSC--------SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCcEEEEEeCCCc--------CcHHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4568999874321 112223445566778889998877654433332 22222 469999998754
No 145
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=59.51 E-value=38 Score=30.79 Aligned_cols=79 Identities=5% Similarity=0.135 Sum_probs=47.0
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecC----CChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCc
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYN----EPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHF 156 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~----~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~ 156 (250)
+.+.-++..+.+.|++.|..++++... .+.+++...+.+++||+| |.|......+.....++......+.+++..
T Consensus 277 GnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivl-GspT~~~~~~p~~~~~l~~l~~~~~~~K~~ 355 (410)
T 4dik_A 277 GFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIF-GVSTYEAEIHPLMRFTLLEIIDKANYEKPV 355 (410)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEE-EECCTTSSSCHHHHHHHHHHHHHCCCCCEE
T ss_pred ChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEE-EeCCcCCcCCHHHHHHHHHHHhcccCCCEE
Confidence 345667888889999999988765432 234555555778999988 334333333333444555555555455334
Q ss_pred eEEc
Q 025574 157 PLYA 160 (250)
Q Consensus 157 PILG 160 (250)
=++|
T Consensus 356 ~~FG 359 (410)
T 4dik_A 356 LVFG 359 (410)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4555
No 146
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=59.50 E-value=31 Score=28.53 Aligned_cols=83 Identities=13% Similarity=-0.014 Sum_probs=48.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC--ChhhH----HHhc-ccCCEEEECCCCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--PEDVL----FEKL-ELVNGVLYTGGWAK 131 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~--~~~~l----~~~l-~~~dgvIlpGG~~~ 131 (250)
....||++..... .....-+...+.+.+++.|..+++..... +.+.. ...+ .++||||+.+....
T Consensus 4 ~~~~Igvi~~~~~--------~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 4 SDEKICAIYPHLK--------DSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp -CCEEEEEESCSC--------SHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred CCcEEEEEeCCCC--------CcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 3468999875321 12233345567778888999988876554 32222 1111 46999999875431
Q ss_pred CccchHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 132 DGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 132 ~~~~~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
... ..++.+. .+ +|+.-+
T Consensus 76 --~~~----~~~~~~~-~~-----iPvV~~ 93 (304)
T 3o1i_D 76 --AYE----HNLKSWV-GN-----TPVFAT 93 (304)
T ss_dssp --SST----TTHHHHT-TT-----SCEEEC
T ss_pred --HHH----HHHHHHc-CC-----CCEEEe
Confidence 111 2245554 56 888766
No 147
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=59.33 E-value=42 Score=28.08 Aligned_cols=83 Identities=18% Similarity=0.110 Sum_probs=45.6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeec-CCChhh----HHHhc-ccCCEEEECCCCCCCc
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDV----LFEKL-ELVNGVLYTGGWAKDG 133 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~-~~~~~~----l~~~l-~~~dgvIlpGG~~~~~ 133 (250)
+..||++..... . ...-+...+.+++++.|.+++.... ..+.+. +...+ +++||||+.+... .
T Consensus 1 ~~~Ig~i~~~~~--------~-~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~--~ 69 (313)
T 2h3h_A 1 MLTIGVIGKSVH--------P-YWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDP--T 69 (313)
T ss_dssp CCEEEEECSCSS--------H-HHHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSST--T
T ss_pred CeEEEEEeCCCc--------H-HHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh--H
Confidence 357898864321 1 2233455566778888998876532 223222 22222 5799999976543 1
Q ss_pred cchHHHHHHHHHHHHhCCCCCCceEEccc
Q 025574 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 134 ~~~~~~~~li~~~~~~~~~g~~~PILGIC 162 (250)
.. ...++.+.+.+ +|+.-+.
T Consensus 70 ~~----~~~~~~~~~~~-----iPvV~~~ 89 (313)
T 2h3h_A 70 AV----IPTIKKALEMG-----IPVVTLD 89 (313)
T ss_dssp TT----HHHHHHHHHTT-----CCEEEES
T ss_pred HH----HHHHHHHHHCC-----CeEEEeC
Confidence 11 13355555666 8876543
No 148
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=59.02 E-value=9.4 Score=28.94 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCCCCceEEcccchhHH
Q 025574 140 EKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (250)
Q Consensus 140 ~~li~~~~~~~~~g~~~PILGIClG~Ql 167 (250)
+++.+.+.+.+ +.++|=|+|+++
T Consensus 95 ~e~~~~a~~~G-----irvv~nC~gv~l 117 (122)
T 3ff4_A 95 EELEEILSENG-----IEPVIGCTLVML 117 (122)
T ss_dssp HHHHHHHHHTT-----CEEEESCHHHHH
T ss_pred HHHHHHHHHcC-----CeEECCcCeEEe
Confidence 36677777777 888888888765
No 149
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=58.43 E-value=2.4 Score=38.86 Aligned_cols=33 Identities=12% Similarity=0.200 Sum_probs=22.9
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHc--CCeEEE
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA--GARVIP 103 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~--G~~~v~ 103 (250)
.|+|+.++.+ .........++++|++. |.++.+
T Consensus 43 ~V~II~n~~~---------~~~~~~~~~l~~~L~~~~~gi~V~v 77 (388)
T 3afo_A 43 NVYITKKPWT---------PSTREAMVEFITHLHESYPEVNVIV 77 (388)
T ss_dssp EEEEEECTTC---------HHHHHHHHHHHHHHHHHCTTCEEEC
T ss_pred EEEEEEeCCC---------HHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 6999998864 22344566788899988 776543
No 150
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=57.80 E-value=49 Score=27.32 Aligned_cols=82 Identities=7% Similarity=-0.083 Sum_probs=44.6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEee--cCCChhh----HHHhc-ccCCEEEECCCCCCCc
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI--YNEPEDV----LFEKL-ELVNGVLYTGGWAKDG 133 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~--~~~~~~~----l~~~l-~~~dgvIlpGG~~~~~ 133 (250)
..||++..... .....-+...+.+.+++.|..+++.. ...+.+. +...+ .++||||+.+... .
T Consensus 2 ~~Igvi~~~~~--------~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~--~ 71 (288)
T 1gud_A 2 AEYAVVLKTLS--------NPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSS--V 71 (288)
T ss_dssp CEEEEEESCSS--------SHHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSS--S
T ss_pred cEEEEEeCCCC--------chHHHHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh--H
Confidence 46888763311 11223345566777888899887765 3333222 22222 4689999976532 1
Q ss_pred cchHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 134 LYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 134 ~~~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
.. ...++.+.+.+ +|+.-+
T Consensus 72 ~~----~~~~~~~~~~~-----iPvV~~ 90 (288)
T 1gud_A 72 NL----VMPVARAWKKG-----IYLVNL 90 (288)
T ss_dssp TT----HHHHHHHHHTT-----CEEEEE
T ss_pred HH----HHHHHHHHHCC-----CeEEEE
Confidence 11 12345555566 887644
No 151
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=57.71 E-value=23 Score=29.90 Aligned_cols=95 Identities=13% Similarity=0.028 Sum_probs=54.6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC------------hhhHHHhcccCCEEEECC
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP------------EDVLFEKLELVNGVLYTG 127 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~------------~~~l~~~l~~~dgvIlpG 127 (250)
..+++|.+.+.. .....-+++.+.+.+++.|+++..+....- ...+.+.+..+|+|||.
T Consensus 35 mkIliI~GS~r~--------~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~- 105 (247)
T 2q62_A 35 PRILILYGSLRT--------VSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWV- 105 (247)
T ss_dssp CEEEEEECCCCS--------SCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEE-
T ss_pred CeEEEEEccCCC--------CCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEE-
Confidence 457788877753 123445666677788888998887765431 23445567889999883
Q ss_pred CCCCCccchHHHHHHHHHHHHh---CCCCCCceEEcccc
Q 025574 128 GWAKDGLYYAIVEKVFKKILEK---NDAGDHFPLYAHCL 163 (250)
Q Consensus 128 G~~~~~~~~~~~~~li~~~~~~---~~~g~~~PILGICl 163 (250)
-|.+...+....+.+++++... ...-..||+.-|+-
T Consensus 106 sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~t 144 (247)
T 2q62_A 106 SPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQV 144 (247)
T ss_dssp EECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEE
T ss_pred eCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEe
Confidence 3333233334455566655321 01112377765554
No 152
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=57.42 E-value=16 Score=28.84 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=30.1
Q ss_pred cchhhHHHHHHHHHHcCCeEEEeecCCC------------------hhhHHHhcccCCEEEEC
Q 025574 82 NASYIAASYVKFVESAGARVIPLIYNEP------------------EDVLFEKLELVNGVLYT 126 (250)
Q Consensus 82 ~~~~i~~s~v~~le~~G~~~v~i~~~~~------------------~~~l~~~l~~~dgvIlp 126 (250)
....+++.+.+.+++.|+++..+..... .+. .+.+..+|+|||.
T Consensus 16 ~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~-~~~l~~aD~ii~g 77 (199)
T 2zki_A 16 SIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVT-LDDMRWADGFAIG 77 (199)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCC-HHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCccccccccc-HHHHHhCCEEEEE
Confidence 4667788888889888998887765432 111 2346789998873
No 153
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=56.98 E-value=68 Score=27.08 Aligned_cols=62 Identities=15% Similarity=-0.045 Sum_probs=35.4
Q ss_pred CCCcEEEEeCCC-CCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEee--cC--CChhh----HHHhc-ccCCEEEECC
Q 025574 58 NYRPVIGIVTHP-GDGASGRLNNATNASYIAASYVKFVESAGARVIPLI--YN--EPEDV----LFEKL-ELVNGVLYTG 127 (250)
Q Consensus 58 ~~~PvIGI~~~~-~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~--~~--~~~~~----l~~~l-~~~dgvIlpG 127 (250)
.....||++... .. .....-+...+.+.+++.|..+.+.. .+ .+.+. +...+ .++||||+++
T Consensus 41 ~~~~~Igvi~~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~ 112 (342)
T 1jx6_A 41 QRPIKISVVYPGQQV--------SDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTL 112 (342)
T ss_dssp SSCEEEEEEECCCSS--------CCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCceEEEEEecCCcc--------cHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 445789998743 11 11223345567778888998876652 22 23221 22222 4699999954
No 154
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=56.98 E-value=35 Score=29.80 Aligned_cols=89 Identities=19% Similarity=0.142 Sum_probs=50.6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChh--hH-HHh-cccCCEEEECCCCCCCccc
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED--VL-FEK-LELVNGVLYTGGWAKDGLY 135 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~--~l-~~~-l~~~dgvIlpGG~~~~~~~ 135 (250)
...++|+.+|..+.. .... +...+.++|++.|..+.+.......+ .+ .+. .+.+|.||..||-+
T Consensus 24 m~~i~vI~NP~sg~~------~~~~-~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDG----- 91 (337)
T 2qv7_A 24 RKRARIIYNPTSGKE------QFKR-ELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDG----- 91 (337)
T ss_dssp CEEEEEEECTTSTTS------CHHH-HHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHH-----
T ss_pred cceEEEEECCCCCCC------chHH-HHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCch-----
Confidence 356888888865321 1122 33567889999998776654332111 11 122 24579999998843
Q ss_pred hHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 136 YAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 136 ~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
+..++++.+.+. +...|+.+|=.|-
T Consensus 92 --Tv~~v~~~l~~~---~~~~pl~iIP~GT 116 (337)
T 2qv7_A 92 --TLNEVVNGIAEK---PNRPKLGVIPMGT 116 (337)
T ss_dssp --HHHHHHHHHTTC---SSCCEEEEEECSS
T ss_pred --HHHHHHHHHHhC---CCCCcEEEecCCc
Confidence 334455555221 1238888876663
No 155
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=56.34 E-value=31 Score=28.69 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=39.3
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHh-----cccCCEEEECCC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEK-----LELVNGVLYTGG 128 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~-----l~~~dgvIlpGG 128 (250)
.....||++.....+ .....-+...+.+.+++.|..+++.....+.+...+. -.++||||+.+.
T Consensus 11 ~~s~~Igvi~~~~~~-------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 11 SRSNTFGIITDYVST-------TPYSVDIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp -CCCEEEEEESSTTT-------CCSCHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCCCEEEEEeCCCcC-------cccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecC
Confidence 345789998754321 1222144566788899999998887655443322111 137999999764
No 156
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=55.72 E-value=28 Score=28.63 Aligned_cols=64 Identities=9% Similarity=-0.061 Sum_probs=36.2
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecC--CChhh----HHHhc-ccCCEEEECCCC
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN--EPEDV----LFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~--~~~~~----l~~~l-~~~dgvIlpGG~ 129 (250)
...||++...... ......-+...+.+.+++.|..+++...+ .+.+. +...+ .++||||+.+..
T Consensus 5 ~~~Ig~v~~~~~~------~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 75 (289)
T 3brs_A 5 QYYMICIPKVLDD------SSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAAD 75 (289)
T ss_dssp CCEEEEECSCCCS------SSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSC
T ss_pred CcEEEEEeCCCCC------CchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 4579998743210 01122234455677788889988776542 23221 22222 469999998754
No 157
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=55.72 E-value=32 Score=29.17 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=36.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~ 129 (250)
....||++..... .....-+...+.+.+++.|..+++.....+.+. +.... .++||||+.+..
T Consensus 59 ~~~~Ig~i~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 126 (332)
T 2hsg_A 59 KTTTVGVIIPDIS--------NIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGN 126 (332)
T ss_dssp -CCEEEEEEC--C--------CSHHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCSS
T ss_pred CCCEEEEEeCCCC--------CcHHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 4568999874321 122233455667788889998877654333221 22222 469999998754
No 158
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=55.46 E-value=9 Score=32.84 Aligned_cols=54 Identities=11% Similarity=0.027 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHh--CCCCCCceEEcccc
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEK--NDAGDHFPLYAHCL 163 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~--~~~g~~~PILGICl 163 (250)
+.+.+.++|++.|.++. .+.+|.||.-||-+ +.....+.+... + +|++||=.
T Consensus 16 ~~~~l~~~l~~~g~~v~--------------~~~~D~vv~lGGDG-------T~l~aa~~~~~~~~~-----~PilGIn~ 69 (272)
T 2i2c_A 16 LRLNMIAGFGEYDMEYD--------------DVEPEIVISIGGDG-------TFLSAFHQYEERLDE-----IAFIGIHT 69 (272)
T ss_dssp HHHHHHHHHTTSSCEEC--------------SSSCSEEEEEESHH-------HHHHHHHHTGGGTTT-----CEEEEEES
T ss_pred HHHHHHHHHHHCCCEeC--------------CCCCCEEEEEcCcH-------HHHHHHHHHhhcCCC-----CCEEEEeC
Confidence 34557788888898651 23679999999844 222333443333 5 99999977
Q ss_pred hh
Q 025574 164 GF 165 (250)
Q Consensus 164 G~ 165 (250)
|.
T Consensus 70 G~ 71 (272)
T 2i2c_A 70 GH 71 (272)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 159
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=55.40 E-value=8.5 Score=35.18 Aligned_cols=42 Identities=24% Similarity=0.114 Sum_probs=23.7
Q ss_pred HHHHHHHcCCeEEEeec-CCChhhH----HHhcccCCEEEECCCCCC
Q 025574 90 YVKFVESAGARVIPLIY-NEPEDVL----FEKLELVNGVLYTGGWAK 131 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~~-~~~~~~l----~~~l~~~dgvIlpGG~~~ 131 (250)
+...+++.|++++.... ..+.+.+ .+.++++|-||.+||-+.
T Consensus 216 L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlvittGG~s~ 262 (396)
T 1wu2_A 216 LQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGSAF 262 (396)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHCSEEEECC-----
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEeCCCCC
Confidence 34578999998764432 2334443 334457899999999875
No 160
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=55.37 E-value=15 Score=29.10 Aligned_cols=63 Identities=19% Similarity=0.175 Sum_probs=38.3
Q ss_pred CcchhhHHHHHHHHHH-cCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHH
Q 025574 81 TNASYIAASYVKFVES-AGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKIL 147 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~-~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~ 147 (250)
+....+++.+.+.+++ .|.++..+...... . +.+..+|+|||- .|.....+....+.+++...
T Consensus 16 GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~--~-~~l~~aD~ii~g-sP~y~g~~~~~lk~fld~~~ 79 (188)
T 2ark_A 16 GNTKKMAELVAEGARSLEGTEVRLKHVDEAT--K-EDVLWADGLAVG-SPTNMGLVSWKMKRFFDDVL 79 (188)
T ss_dssp SHHHHHHHHHHHHHHTSTTEEEEEEETTTCC--H-HHHHHCSEEEEE-EECBTTBCCHHHHHHHHHTG
T ss_pred cHHHHHHHHHHHHHhhcCCCeEEEEEhhhCC--H-HHHHhCCEEEEE-eCccCCcCCHHHHHHHHHHh
Confidence 3466778888888888 88888777654321 1 135678998873 33322233334456666553
No 161
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=55.10 E-value=23 Score=29.31 Aligned_cols=63 Identities=17% Similarity=0.108 Sum_probs=34.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEe-ecCCChh----hHHHhc-ccCCEEEECCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPL-IYNEPED----VLFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i-~~~~~~~----~l~~~l-~~~dgvIlpGG~ 129 (250)
....||++..... .....-+...+.+.+++.|..+++. ....+.+ .+.... .++||||+.+..
T Consensus 7 ~~~~Ig~i~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 75 (290)
T 3clk_A 7 SSNVIAAVVSSVR--------TNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIA 75 (290)
T ss_dssp -CCEEEEECCCCS--------SSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC
T ss_pred cCCEEEEEeCCCC--------ChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 4468999874321 1223334556677888889988766 4322221 122222 569999997754
No 162
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=54.76 E-value=33 Score=29.49 Aligned_cols=62 Identities=16% Similarity=0.062 Sum_probs=35.7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCC
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~ 129 (250)
...||++..... .....-+...+.+.+++.|..+++.....+.+. +.... .++||||+.+..
T Consensus 66 s~~Igvi~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 132 (348)
T 3bil_A 66 SNTIGVIVPSLI--------NHYFAAMVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPNE 132 (348)
T ss_dssp --CEEEEESCSS--------SHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCCG
T ss_pred CCEEEEEeCCCC--------CcHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 457999874321 112223455567778889998887665444332 22222 469999998753
No 163
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=54.30 E-value=59 Score=26.87 Aligned_cols=87 Identities=13% Similarity=0.106 Sum_probs=47.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC--ChhhHHHhc--ccCCEEEECCCCCCCcc
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--PEDVLFEKL--ELVNGVLYTGGWAKDGL 134 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~--~~~~l~~~l--~~~dgvIlpGG~~~~~~ 134 (250)
....||++....... . ......-+...+.+.+++.|..+++...+. ....+.+.+ .++||||+.+....+
T Consensus 5 ~s~~Igvi~~~~~~~---~-~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-- 78 (294)
T 3qk7_A 5 RTDAIALAYPSRPRV---L-NNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED-- 78 (294)
T ss_dssp CCCEEEEEEESCSGG---G-SCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC--
T ss_pred ccceEEEEecCCCcc---c-cChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh--
Confidence 446899987532100 0 111222345567778888999888776542 112222223 379999998765411
Q ss_pred chHHHHHHHHHHHHhCCCCCCceEEccc
Q 025574 135 YYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 135 ~~~~~~~li~~~~~~~~~g~~~PILGIC 162 (250)
..++.+.+.+ +|+.-+.
T Consensus 79 ------~~~~~l~~~~-----iPvV~~~ 95 (294)
T 3qk7_A 79 ------FRLQYLQKQN-----FPFLALG 95 (294)
T ss_dssp ------HHHHHHHHTT-----CCEEEES
T ss_pred ------HHHHHHHhCC-----CCEEEEC
Confidence 2344444555 7765443
No 164
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=53.93 E-value=39 Score=24.55 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=29.9
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCCC-hhhHHHhcccCCEEEEC
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNEP-EDVLFEKLELVNGVLYT 126 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~~-~~~l~~~l~~~dgvIlp 126 (250)
+....+++.+.+.+++.|.++.++..... .+ .+..+|+|||-
T Consensus 11 GnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~----~l~~~d~vi~g 53 (137)
T 2fz5_A 11 GNTEAMANEIEAAVKAAGADVESVRFEDTNVD----DVASKDVILLG 53 (137)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEETTSCCHH----HHHTCSEEEEE
T ss_pred ChHHHHHHHHHHHHHhCCCeEEEEEcccCCHH----HHhcCCEEEEE
Confidence 45667888888889888998888775532 22 25678988774
No 165
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=53.70 E-value=54 Score=26.79 Aligned_cols=63 Identities=17% Similarity=0.050 Sum_probs=36.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~ 129 (250)
....||++..... .....-+...+.+.+++.|..+.......+.+. +.... .++||||+.+..
T Consensus 6 ~~~~Ig~i~~~~~--------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 6 HTKSIGLLATSSE--------AAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp --CEEEEEESCTT--------SHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCCEEEEEeCCCC--------ChHHHHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 3468999874321 112222445566778888998877654444332 22222 469999997754
No 166
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=53.53 E-value=67 Score=26.38 Aligned_cols=84 Identities=10% Similarity=0.051 Sum_probs=46.0
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEee-cCCChhh----HHHhc-ccCCEEEECCCCCCCc
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI-YNEPEDV----LFEKL-ELVNGVLYTGGWAKDG 133 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~-~~~~~~~----l~~~l-~~~dgvIlpGG~~~~~ 133 (250)
...||++..... .....-+...+.+++++.|.+++.+. ...+.+. +...+ +++||||+.+...
T Consensus 4 ~~~Ig~i~~~~~--------~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~--- 72 (303)
T 3d02_A 4 EKTVVNISKVDG--------MPWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPNDA--- 72 (303)
T ss_dssp CEEEEEECSCSS--------CHHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCH---
T ss_pred ceEEEEEeccCC--------ChHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCCh---
Confidence 467999874321 11223345566778888898876543 2223222 22222 4699999976521
Q ss_pred cchHHHHHHHHHHHHhCCCCCCceEEccc
Q 025574 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 134 ~~~~~~~~li~~~~~~~~~g~~~PILGIC 162 (250)
......++.+.+.+ +|+.-+.
T Consensus 73 ---~~~~~~~~~~~~~~-----ipvV~~~ 93 (303)
T 3d02_A 73 ---NVLEPVFKKARDAG-----IVVLTNE 93 (303)
T ss_dssp ---HHHHHHHHHHHHTT-----CEEEEES
T ss_pred ---HHHHHHHHHHHHCC-----CeEEEEe
Confidence 11223456665666 7876544
No 167
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=53.46 E-value=33 Score=29.05 Aligned_cols=114 Identities=16% Similarity=0.214 Sum_probs=59.5
Q ss_pred HHHHHHHHHHcCCeEEEeecCCChhhH-HHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 87 AASYVKFVESAGARVIPLIYNEPEDVL-FEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 87 ~~s~v~~le~~G~~~v~i~~~~~~~~l-~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
...+.+.|+..|.++..+..++....+ .+.|+++|.||+-|-... ........+-++..++.+ .+++||=-|.
T Consensus 34 ~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~~~~~~-~~l~~~~~~al~~~V~~G-----gG~vgiH~a~ 107 (252)
T 1t0b_A 34 HTVIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIAH-DEVKDEVVERVHRRVLEG-----MGLIVLHSGH 107 (252)
T ss_dssp HHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSCG-GGSCHHHHHHHHHHHHTT-----CEEEEEGGGG
T ss_pred HHHHHHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEecCCCC-CcCCHHHHHHHHHHHHcC-----CCEEEEcccC
Confidence 334567888899988876533322211 134789999999432110 112222334455555677 8999995553
Q ss_pred --HHHHHHhcCcccccccccCCCceeeeeeeecCCCCCcccccCChhh
Q 025574 166 --ELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKL 211 (250)
Q Consensus 166 --QlL~~~~GG~~~~l~~~~~~~~~~pi~~~~~~~~~s~Lf~~lp~~~ 211 (250)
+.....+||.-. .+.........+... ..++++.+++|..+
T Consensus 108 ~~~~y~~llGg~f~--~~~~~~~~~~~v~v~---~~~HPit~gl~~~f 150 (252)
T 1t0b_A 108 FSKIFKKLMGTTCN--LKWREADEKERLWVV---APGHPIVEGIGPYI 150 (252)
T ss_dssp GSHHHHHHHCSCCC--CEEEEEEEEEEEEES---CTTSGGGTTCCSEE
T ss_pred CcHHHHhhhCCccc--CCCccCCceEEEEEC---CCCChhhcCCCCCc
Confidence 344555677521 111100111122221 22678888887544
No 168
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=52.61 E-value=14 Score=29.37 Aligned_cols=77 Identities=10% Similarity=0.089 Sum_probs=40.5
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCC---------------ChhhHHHhcccCCEEEE
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE---------------PEDVLFEKLELVNGVLY 125 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~---------------~~~~l~~~l~~~dgvIl 125 (250)
.++.|...+.. ......+++.+.+.++ .|+++..+.... +.+.+.+.+..+|+|||
T Consensus 8 kilii~gS~r~--------~g~t~~la~~i~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~ 78 (193)
T 1rtt_A 8 KVLGISGSLRS--------GSYNSAALQEAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLF 78 (193)
T ss_dssp EEEEEESCCST--------TCHHHHHHHHHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEE
T ss_pred eEEEEECCCCC--------CChHHHHHHHHHHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEE
Confidence 36666666642 1233444444444444 577877765432 01223345778999988
Q ss_pred CCCCCCCccchHHHHHHHHHHH
Q 025574 126 TGGWAKDGLYYAIVEKVFKKIL 147 (250)
Q Consensus 126 pGG~~~~~~~~~~~~~li~~~~ 147 (250)
. .|.....+....+.+++++.
T Consensus 79 ~-sP~y~~~~p~~lK~~iD~~~ 99 (193)
T 1rtt_A 79 A-TPEYNYSMAGVLKNAIDWAS 99 (193)
T ss_dssp E-CCEETTEECHHHHHHHHHHT
T ss_pred E-ccccccCcCHHHHHHHHHhc
Confidence 4 33322223334556666653
No 169
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=52.15 E-value=6.8 Score=31.10 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=36.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHc-----CCeEEEee-cCCChhhHH----Hhc--ccCCEEEEC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-----GARVIPLI-YNEPEDVLF----EKL--ELVNGVLYT 126 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~-----G~~~v~i~-~~~~~~~l~----~~l--~~~dgvIlp 126 (250)
.+|.|+|++--..-..|+. .+....++. +.+++. |++++... ...+.+.+. +.+ +++|-||.+
T Consensus 4 ~~~rv~IistGde~~~G~~-~d~n~~~l~----~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 78 (167)
T 1uuy_A 4 PEYKVAILTVSDTVSAGAG-PDRSGPRAV----SVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTL 78 (167)
T ss_dssp CSEEEEEEEECHHHHTTSS-CCSHHHHHH----HHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CCcEEEEEEECCcccCCCC-ccCcHHHHH----HHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 5689999873211111111 112223443 456666 88775432 223444443 233 268999999
Q ss_pred CCCCC
Q 025574 127 GGWAK 131 (250)
Q Consensus 127 GG~~~ 131 (250)
||-+.
T Consensus 79 GG~g~ 83 (167)
T 1uuy_A 79 GGTGF 83 (167)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 99875
No 170
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=48.62 E-value=29 Score=27.76 Aligned_cols=46 Identities=20% Similarity=0.209 Sum_probs=31.9
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCCC----------------------hhhHHHhcccCCEEEEC
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNEP----------------------EDVLFEKLELVNGVLYT 126 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~~----------------------~~~l~~~l~~~dgvIlp 126 (250)
.....+++.+.+.+++.|+++..+..... .+.+.+.+..+|+|||-
T Consensus 18 g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~g 85 (211)
T 1ydg_A 18 GTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFS 85 (211)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEE
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEE
Confidence 34667888888899989998888776541 01233446789998874
No 171
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=48.59 E-value=29 Score=28.11 Aligned_cols=57 Identities=12% Similarity=0.100 Sum_probs=38.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecC-------CChhhHHHhcccCCEEEEC
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN-------EPEDVLFEKLELVNGVLYT 126 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~-------~~~~~l~~~l~~~dgvIlp 126 (250)
..++.|.++|... .+-+.+.+++.+++.|.++..+... .+.+...+.+..+|+|||.
T Consensus 2 mkiLiI~gsp~~~----------~s~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~ 65 (192)
T 3f2v_A 2 PKTLIILAHPNIS----------QSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQ 65 (192)
T ss_dssp CCEEEEECCTTGG----------GCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEE
T ss_pred CEEEEEEeCCCcc----------HHHHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEE
Confidence 4577888888531 1345667888888889888777542 2334445567889998884
No 172
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=48.38 E-value=50 Score=26.49 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=27.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHc--CCeEEEeec
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA--GARVIPLIY 106 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~--G~~~v~i~~ 106 (250)
..++.|.++|... .....-+.+.+++.+++. |+++..+..
T Consensus 2 mkiLii~gSpr~~-------~s~t~~l~~~~~~~~~~~~~g~~v~~~dL 43 (212)
T 3r6w_A 2 SRILAVHASPRGE-------RSQSRRLAEVFLAAYREAHPQARVARREV 43 (212)
T ss_dssp CCEEEEECCSCST-------TCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred CEEEEEEeCCCCC-------CCHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 3577888877531 123455677788888887 888887765
No 173
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=48.10 E-value=90 Score=26.41 Aligned_cols=63 Identities=17% Similarity=0.050 Sum_probs=37.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~ 129 (250)
....||++..... .....-+...+.+.+++.|..+.......+.+. +.... .++||||+.+..
T Consensus 57 ~~~~Igvi~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 124 (340)
T 1qpz_A 57 HTKSIGLLATSSE--------AAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSE 124 (340)
T ss_dssp CCSEEEEEESCSC--------SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred CCCEEEEEeCCCC--------ChHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 4468999874321 112223445566778888998877654444332 22222 469999998754
No 174
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=48.08 E-value=93 Score=26.24 Aligned_cols=68 Identities=9% Similarity=0.026 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCChhh---HHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEccc
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPEDV---LFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~---l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIC 162 (250)
..+.+.+..++.|.+++........+. +.....+.|+++++... ......+.+...+.+.+ +|++|.-
T Consensus 157 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~~~~d~i~~~~d~----~~~~~~~~i~~~~~~~~-----iPv~~~~ 227 (302)
T 3lkv_A 157 LMELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDN----TVASAIEGMIVAANQAK-----TPVFGAA 227 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHHTTCSEEEECSCH----HHHHTHHHHHHHHHHTT-----CCEEESS
T ss_pred HHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhccCCeeEEEEeCCc----chhhHHHHHHHHHhhcC-----Cceeecc
Confidence 344455677888998887765543221 12334678999887432 22233445566666777 9999853
No 175
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=46.72 E-value=35 Score=25.53 Aligned_cols=61 Identities=11% Similarity=0.087 Sum_probs=41.1
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHH-HHHHHHHHcCCeEEE-------eecCCChhhHHHhcccCCEEEECCCC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAA-SYVKFVESAGARVIP-------LIYNEPEDVLFEKLELVNGVLYTGGW 129 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~-s~v~~le~~G~~~v~-------i~~~~~~~~l~~~l~~~dgvIlpGG~ 129 (250)
++..+++|++.|.. -..+|+++ .+.++-++.|..+.+ +....+.++ ++.+|+||+-+.-
T Consensus 4 m~mkIvaVTaCptG---------iAHTyMAAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~----I~~Ad~VIiA~d~ 70 (111)
T 2kyr_A 4 MSKKLIALCACPMG---------LAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQD----IAEATIIIHSVAV 70 (111)
T ss_dssp CCCEEEEEEEESSC---------HHHHHHHHHHHHHHHHHTSSEEEEEEEETTEEESCCCHHH----HHHCSEEEEEESS
T ss_pred ccccEEEEEcCCCc---------HHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHHH----HHhCCEEEEEeCC
Confidence 45679999998843 34677765 455677888987765 222234444 5678999998876
Q ss_pred CC
Q 025574 130 AK 131 (250)
Q Consensus 130 ~~ 131 (250)
..
T Consensus 71 ~v 72 (111)
T 2kyr_A 71 TP 72 (111)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 176
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=45.46 E-value=47 Score=28.70 Aligned_cols=78 Identities=8% Similarity=0.058 Sum_probs=47.0
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC-------------hhhHHHhcccCCEEEEC
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-------------EDVLFEKLELVNGVLYT 126 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~-------------~~~l~~~l~~~dgvIlp 126 (250)
..+++|.+.+.. ......+++.+.+.+++.|+++..+....- ...+.+.+..+|||||.
T Consensus 59 mKILiI~GS~R~--------~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~a 130 (279)
T 2fzv_A 59 VRILLLYGSLRA--------RSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWC 130 (279)
T ss_dssp CEEEEEESCCSS--------SCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEE
T ss_pred CEEEEEEeCCCC--------CCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEE
Confidence 347777777753 133445666677888888998887765321 22344567789999884
Q ss_pred CCCCCCccchHHHHHHHHHH
Q 025574 127 GGWAKDGLYYAIVEKVFKKI 146 (250)
Q Consensus 127 GG~~~~~~~~~~~~~li~~~ 146 (250)
-|.+...+....+.+++++
T Consensus 131 -SP~Yn~sipg~LKn~IDrl 149 (279)
T 2fzv_A 131 -SPERHGQITSVMKAQIDHL 149 (279)
T ss_dssp -EEEETTEECHHHHHHHHHS
T ss_pred -cCccccCcCHHHHHHHHHH
Confidence 2222223334455666665
No 177
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=45.28 E-value=13 Score=27.75 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEccc
Q 025574 87 AASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 87 ~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIC 162 (250)
...++..+...|....- +.++.+|++|+.-|... ....-...-++.|.+.+ +|++||=
T Consensus 17 ~~~L~~~l~~~~f~~~~-----------~~I~~~~~vIvL~G~~t--~~s~wv~~EI~~A~~~g-----kpIigV~ 74 (111)
T 1eiw_A 17 YRVFLERLEQSGLEWRP-----------ATPEDADAVIVLAGLWG--TRRDEILGAVDLARKSS-----KPIITVR 74 (111)
T ss_dssp HHHHHHHHHHHCSCEEE-----------CCSSSCSEEEEEGGGTT--TSHHHHHHHHHHHTTTT-----CCEEEEC
T ss_pred HHHHHHHHhCCCCeeec-----------CccccCCEEEEEeCCCc--CCChHHHHHHHHHHHcC-----CCEEEEE
Confidence 44566666655665543 24889999987766542 12222233457777777 9999983
No 178
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}
Probab=45.12 E-value=1.5e+02 Score=25.41 Aligned_cols=79 Identities=11% Similarity=-0.028 Sum_probs=52.3
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccch
Q 025574 57 LNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY 136 (250)
Q Consensus 57 ~~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~ 136 (250)
+..+|+|==+|+.-. .....+.+-..|+.++... .++++.+.++.+|++++=-|-. .+.+.
T Consensus 14 ~~~~Plvh~iTN~V~---------------~n~~AN~~La~GasP~M~~---~~~e~~e~~~~a~alvIn~G~l-~~~~~ 74 (273)
T 3dzv_A 14 LTTAPLIQCITNEIT---------------CESMANALLYIDAKPIMAD---DPREFPQMFQQTSALVLNLGHL-SQERE 74 (273)
T ss_dssp CCSCCEEEEECCTTT---------------HHHHHHHHHHTTCEEECCC---CGGGHHHHHTTCSEEEEECCSC-CHHHH
T ss_pred CCCCCEEEEecCcch---------------hhhHHHHHHHcCCchhhcC---CHHHHHHHHHHCCeEEEecCCC-ChHHH
Confidence 567898887776532 2224467888999998763 4667777788899988866654 33333
Q ss_pred HHHHHHHHHHHHhCCCCCCceEE
Q 025574 137 AIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 137 ~~~~~li~~~~~~~~~g~~~PIL 159 (250)
+.....++.+.+.+ +|+.
T Consensus 75 ~~~~~a~~~a~~~~-----~PvV 92 (273)
T 3dzv_A 75 QSLLAASDYARQVN-----KLTV 92 (273)
T ss_dssp HHHHHHHHHHHHTT-----CCEE
T ss_pred HHHHHHHHHHHHcC-----CcEE
Confidence 33445556666666 7874
No 179
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=44.87 E-value=1e+02 Score=25.63 Aligned_cols=66 Identities=6% Similarity=-0.018 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCeEEEeecCCCh---hhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcc
Q 025574 87 AASYVKFVESAGARVIPLIYNEPE---DVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (250)
Q Consensus 87 ~~s~v~~le~~G~~~v~i~~~~~~---~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGI 161 (250)
.+.|.+++++.|..+......... +.+..+++.+|+|+.+.... -.+..+.+.+...+.+ +||.|.
T Consensus 158 ~~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~~~~dai~~~~D~~----a~g~~~~l~~~~~~~~-----i~vig~ 226 (302)
T 2qh8_A 158 MELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNT----VASAIEGMIVAANQAK-----TPVFGA 226 (302)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHGGGCSEEEECSCHH----HHTTHHHHHHHHHHTT-----CCEEES
T ss_pred HHHHHHHHHHcCCEEEEEecCChHHHHHHHHHHhccCCEEEECCcHh----HHHHHHHHHHHHHHcC-----CCEEEC
Confidence 456888999999887665443221 12334456789998863211 1122334555555555 999885
No 180
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=44.86 E-value=68 Score=28.33 Aligned_cols=66 Identities=9% Similarity=0.019 Sum_probs=40.3
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCC-ChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHH
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKIL 147 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~ 147 (250)
+....+++.+.+.+++.|+++..+.... +...+.+.+..+|+|||. .|..........+.++++..
T Consensus 268 GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~iiig-sP~y~~~~~~~~k~fld~l~ 334 (414)
T 2q9u_A 268 GTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVAFA-SPTLNNTMMPSVAAALNYVR 334 (414)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEEEE-CCCBTTBCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEEEEE-cCccCcCchHHHHHHHHHHH
Confidence 4566788888888888898887776542 233333457789988875 33322222233455666654
No 181
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=44.57 E-value=26 Score=28.91 Aligned_cols=64 Identities=8% Similarity=-0.035 Sum_probs=35.1
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChh---hHHHhc--ccCCEEEECCC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED---VLFEKL--ELVNGVLYTGG 128 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~---~l~~~l--~~~dgvIlpGG 128 (250)
....+|||+..... ......-+...+.+.+++.|..+++.....+.+ .+.+.+ .++||||+.+.
T Consensus 9 ~~~~~Igvi~~~~~-------~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 77 (289)
T 3g85_A 9 QSKPTIALYWSSDI-------SVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANI 77 (289)
T ss_dssp --CCEEEEEEETTS-------CGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSC
T ss_pred CCCceEEEEecccc-------chHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecC
Confidence 45578999875211 112233345567778888898876654322211 111112 36899999875
No 182
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=44.42 E-value=54 Score=26.86 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=37.7
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCe-EEEeecCCChhhH----HHhc-ccCCEEEECC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGAR-VIPLIYNEPEDVL----FEKL-ELVNGVLYTG 127 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~-~v~i~~~~~~~~l----~~~l-~~~dgvIlpG 127 (250)
....+||++..... .....-+...+.+.+++.|.. +++.....+.+.. .... .++||||+.+
T Consensus 8 ~~~~~Igvi~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 8 KKSKMIGIIIPDLN--------NRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCCCEEEEEESCTT--------SHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCCEEEEEeCCCC--------ChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 44578999875422 122333455677788889999 6665544443321 2111 4799999987
No 183
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=44.39 E-value=39 Score=27.99 Aligned_cols=64 Identities=9% Similarity=0.049 Sum_probs=37.9
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChh---hHHHhc-ccCCEEEECCCCC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED---VLFEKL-ELVNGVLYTGGWA 130 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~---~l~~~l-~~~dgvIlpGG~~ 130 (250)
.....||++. ... .....-+...+.+.+++.|..+++.....+.+ .+...+ .++||||+.+...
T Consensus 10 ~~~~~Igvi~-~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 77 (289)
T 3k9c_A 10 ASSRLLGVVF-ELQ--------QPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRF 77 (289)
T ss_dssp ---CEEEEEE-ETT--------CHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCC
T ss_pred CCCCEEEEEE-ecC--------CchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 3456899988 321 12233345567788888999888776544322 222222 4689999987643
No 184
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=44.32 E-value=38 Score=28.51 Aligned_cols=67 Identities=6% Similarity=0.014 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCeEEEeecC----CChhhHHHhcccCCEEEECCCCCC--C--ccch------HHHHHHHHHHHHhCCCCC
Q 025574 89 SYVKFVESAGARVIPLIYN----EPEDVLFEKLELVNGVLYTGGWAK--D--GLYY------AIVEKVFKKILEKNDAGD 154 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~----~~~~~l~~~l~~~dgvIlpGG~~~--~--~~~~------~~~~~li~~~~~~~~~g~ 154 (250)
.+.++|+..|.+++.++.. .-++.. +.++++|.||+.+.+.. . +..+ ....+.++..++.+
T Consensus 44 ~l~~aL~~~~~~v~~~~~~~~~~~fp~~~-~~L~~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~G---- 118 (256)
T 2gk3_A 44 WLLECLRKGGVDIDYMPAHTVQIAFPESI-DELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNG---- 118 (256)
T ss_dssp HHHHHHHHTTCEEEEECHHHHHHCCCCSH-HHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTT----
T ss_pred HHHHHHHhcCceEEEEecccchhhCCcCh-hHHhcCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHhC----
Confidence 4566899899998887432 111111 24778999999986641 1 1110 12235566666666
Q ss_pred CceEEcc
Q 025574 155 HFPLYAH 161 (250)
Q Consensus 155 ~~PILGI 161 (250)
..+++|
T Consensus 119 -Ggll~i 124 (256)
T 2gk3_A 119 -GGLLMI 124 (256)
T ss_dssp -CEEEEE
T ss_pred -CEEEEE
Confidence 889988
No 185
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=43.59 E-value=39 Score=26.95 Aligned_cols=79 Identities=13% Similarity=0.068 Sum_probs=44.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC--------------hhhHHHhcccCCEEE
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--------------EDVLFEKLELVNGVL 124 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~--------------~~~l~~~l~~~dgvI 124 (250)
|+.++.|.+.|..+ ....-+++.+.+.++ .|+++..+....- .+.+.+.+..+|+||
T Consensus 2 M~kilii~gS~r~~--------s~t~~la~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV 72 (192)
T 3fvw_A 2 SKRILFIVGSFSEG--------SFNRQLAKKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIW 72 (192)
T ss_dssp -CEEEEEESCCSTT--------CHHHHHHHHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEE
T ss_pred CCEEEEEEcCCCCC--------CHHHHHHHHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEE
Confidence 45677888877531 223445555666665 5777777654321 123455678899988
Q ss_pred ECCCCCCCccchHHHHHHHHHHH
Q 025574 125 YTGGWAKDGLYYAIVEKVFKKIL 147 (250)
Q Consensus 125 lpGG~~~~~~~~~~~~~li~~~~ 147 (250)
|. -|.....+....+.+++++.
T Consensus 73 ~~-sP~y~~~~p~~lK~~iD~~~ 94 (192)
T 3fvw_A 73 IF-SPVYNYAIPGPVKNLLDWLS 94 (192)
T ss_dssp EE-CCCBTTBCCHHHHHHHHHHT
T ss_pred EE-CcccccCCCHHHHHHHHHhh
Confidence 84 23222233334556666664
No 186
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=43.56 E-value=53 Score=28.79 Aligned_cols=82 Identities=9% Similarity=-0.066 Sum_probs=45.8
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCC-ChhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCC-CCCCceE
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKND-AGDHFPL 158 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~-~g~~~PI 158 (250)
+....++..+.+.+++.|+++..+.... +.+.+...+..+|+|||.- |.....+....+.++++...... .-..+|+
T Consensus 268 gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iiigs-P~y~~~~~~~~k~~ld~l~~~~~~~l~~k~~ 346 (404)
T 2ohh_A 268 GSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGA-PTIYDEPYPSVGDLLMYLRGLKFNRTLTRKA 346 (404)
T ss_dssp SHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEEC-CEETTEECTHHHHHHHHHHHHCGGGTCCEEE
T ss_pred hHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEEC-ccccccchHHHHHHHHHhhhccccccCCCEE
Confidence 4566778888888888888887776543 2334444577899988852 22111222234455655433111 0012777
Q ss_pred Ecccc
Q 025574 159 YAHCL 163 (250)
Q Consensus 159 LGICl 163 (250)
.-+|.
T Consensus 347 ~~~~~ 351 (404)
T 2ohh_A 347 LVFGS 351 (404)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 65543
No 187
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=43.12 E-value=54 Score=26.89 Aligned_cols=87 Identities=9% Similarity=-0.022 Sum_probs=48.1
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHc-CCeEEEeec--C-CChhh----HHHh-cccCCEEEECCC
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIY--N-EPEDV----LFEK-LELVNGVLYTGG 128 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~-G~~~v~i~~--~-~~~~~----l~~~-l~~~dgvIlpGG 128 (250)
.....||++..... ......-+...+.+.+++. |..+.+... . .+.+. +... -.++||||+.+.
T Consensus 6 ~~~~~Igvi~~~~~-------~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 78 (304)
T 3gbv_A 6 NKKYTFACLLPKHL-------EGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPT 78 (304)
T ss_dssp -CCEEEEEEEECCC-------TTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred CCcceEEEEecCCC-------CchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 34568998765431 0122334555677788888 777766542 1 12222 2222 246999999875
Q ss_pred CCCCccchHHHHHHHHHHHHhCCCCCCceEEccc
Q 025574 129 WAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (250)
Q Consensus 129 ~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIC 162 (250)
.. +. ....++.+.+.+ +|+.-+.
T Consensus 79 ~~--~~----~~~~~~~~~~~~-----iPvV~~~ 101 (304)
T 3gbv_A 79 VP--QY----TKGFTDALNELG-----IPYIYID 101 (304)
T ss_dssp SG--GG----THHHHHHHHHHT-----CCEEEES
T ss_pred Ch--HH----HHHHHHHHHHCC-----CeEEEEe
Confidence 32 11 124456666667 8876554
No 188
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=41.84 E-value=60 Score=25.28 Aligned_cols=40 Identities=3% Similarity=-0.028 Sum_probs=25.7
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcC--CeEEEeecC
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAG--ARVIPLIYN 107 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G--~~~v~i~~~ 107 (250)
.++.|...|.. ......-+++.+.+.+++.| +++..+...
T Consensus 3 kilii~~S~~~-------~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~ 44 (201)
T 1t5b_A 3 KVLVLKSSILA-------GYSQSGQLTDYFIEQWREKHVADEITVRDLA 44 (201)
T ss_dssp EEEEEECCSSG-------GGCHHHHHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred eEEEEEeCCCC-------CCChHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 46677776642 01345566777788888876 777777654
No 189
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=41.49 E-value=38 Score=27.31 Aligned_cols=97 Identities=14% Similarity=0.114 Sum_probs=52.6
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHH----HHHHc--CCeEEEeecCC-------------C---hhhHH
Q 025574 57 LNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVK----FVESA--GARVIPLIYNE-------------P---EDVLF 114 (250)
Q Consensus 57 ~~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~----~le~~--G~~~v~i~~~~-------------~---~~~l~ 114 (250)
..+|.|++|.+.++.+ ....-+++.+++ .+++. |+++..+.... . .+.+.
T Consensus 9 ~~~~~il~i~GS~r~~--------S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~ 80 (191)
T 3k1y_A 9 SHMRTLAVISAGLSTP--------SSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEIT 80 (191)
T ss_dssp CCSEEEEEEECCCSSS--------CHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHH
T ss_pred hhhceEEEEECCCCCC--------CHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHH
Confidence 4789999999988752 223445555666 55555 67777665422 1 11234
Q ss_pred HhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccch
Q 025574 115 EKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (250)
Q Consensus 115 ~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG 164 (250)
+.+..+|+|||. .|.+...+....+.+++++... .-..||+.=++-|
T Consensus 81 ~~i~~AD~ivi~-sP~Y~~~~~~~lK~~iD~~~~~--~l~gK~~~~v~t~ 127 (191)
T 3k1y_A 81 SALSASDGLVVA-TPVFKASYTGLFKMFFDILDTD--ALTGMPTIIAATA 127 (191)
T ss_dssp HHHHHCSEEEEE-EECBTTBSCHHHHHHHHHSCTT--TTTTCEEEEEEEE
T ss_pred HHHHHCCEEEEE-cCccCCcCcHHHHHHHHHhhhh--hcCCCEEEEEEeC
Confidence 456778988874 2222222333445555554211 1122777655543
No 190
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=41.39 E-value=64 Score=25.87 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=36.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCC
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~ 129 (250)
...||++..... .....-+...+.+.+++.|..+++.....+.+. +.... .++||||+.+..
T Consensus 2 s~~Igvi~~~~~--------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 68 (255)
T 1byk_A 2 DKVVAIIVTRLD--------SLSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGFT 68 (255)
T ss_dssp CCEEEEEESCTT--------CHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECCT
T ss_pred CCEEEEEeCCCC--------CccHHHHHHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 357899874321 112223445566778888998877664433322 22222 469999998753
No 191
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=40.24 E-value=64 Score=28.03 Aligned_cols=95 Identities=15% Similarity=0.081 Sum_probs=52.6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChh--hH-HHh-cccCCEEEECCCCCCCccch
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED--VL-FEK-LELVNGVLYTGGWAKDGLYY 136 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~--~l-~~~-l~~~dgvIlpGG~~~~~~~~ 136 (250)
..++|+.+|..+. . . ....+.+++++.|..+.+.......+ .+ .+. .+.+|.||..||-.
T Consensus 30 ~~~~vi~Np~sg~-------~--~-~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDG------ 93 (332)
T 2bon_A 30 PASLLILNGKSTD-------N--L-PLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDG------ 93 (332)
T ss_dssp CCEEEEECSSSTT-------C--H-HHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHH------
T ss_pred ceEEEEECCCCCC-------C--c-hHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccch------
Confidence 3478888886422 1 2 23457889999998877654332211 11 111 24689999998843
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEcccchhHH-HHHHhc
Q 025574 137 AIVEKVFKKILEKNDAGDHFPLYAHCLGFEL-LTMIIS 173 (250)
Q Consensus 137 ~~~~~li~~~~~~~~~g~~~PILGIClG~Ql-L~~~~G 173 (250)
+..++++.+.+.. .+...|+..|=.|--= ++..+|
T Consensus 94 -Tl~~v~~~l~~~~-~~~~~plgiiP~Gt~N~fa~~l~ 129 (332)
T 2bon_A 94 -TINEVSTALIQCE-GDDIPALGILPLGTANDFATSVG 129 (332)
T ss_dssp -HHHHHHHHHHHCC-SSCCCEEEEEECSSSCHHHHHTT
T ss_pred -HHHHHHHHHhhcc-cCCCCeEEEecCcCHHHHHHhcC
Confidence 3445566665321 1223887767455432 444444
No 192
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=39.62 E-value=60 Score=26.80 Aligned_cols=39 Identities=13% Similarity=0.048 Sum_probs=28.6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecC
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN 107 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~ 107 (250)
.++.|.++|.. .....-+++.+++.+++.|.++.++...
T Consensus 3 kiLiI~gspr~--------~S~t~~l~~~~~~~l~~~g~ev~~~dL~ 41 (228)
T 3tem_A 3 KVLIVYAHQEP--------KSFNGSLKNVAVDELSRQGCTVTVSDLY 41 (228)
T ss_dssp EEEEEECCSCT--------TSHHHHHHHHHHHHHHHHTCEEEEEETT
T ss_pred EEEEEEeCCCC--------CCHHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 47788888863 1335567777888998889999888754
No 193
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=38.17 E-value=32 Score=30.42 Aligned_cols=42 Identities=29% Similarity=0.358 Sum_probs=32.6
Q ss_pred EEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHH
Q 025574 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (250)
Q Consensus 122 gvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~ 170 (250)
||+.+||+. |.+-.....+++.++..+ .-|+||..|++=|..
T Consensus 5 gIltsGG~~--pG~Na~ir~vv~~a~~~g-----~~v~Gi~~G~~Gl~~ 46 (319)
T 4a3s_A 5 GVLTSGGDS--PGMNAAVRAVVRKAIYHD-----VEVYGIYNGYAGLIS 46 (319)
T ss_dssp EEEEESSCC--TTHHHHHHHHHHHHHHTT-----CEEEEECSTTHHHHH
T ss_pred EEECcCCCc--HHHHHHHHHHHHHHHHCC-----CEEEEEecchHHHcC
Confidence 788888876 555555667888887766 679999999988864
No 194
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=37.93 E-value=49 Score=27.03 Aligned_cols=42 Identities=5% Similarity=0.037 Sum_probs=27.9
Q ss_pred HHHHHHHHcCCeEEEeecCC-----ChhhHHHhcccCCEEEECCCCC
Q 025574 89 SYVKFVESAGARVIPLIYNE-----PEDVLFEKLELVNGVLYTGGWA 130 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~-----~~~~l~~~l~~~dgvIlpGG~~ 130 (250)
.+.+.|++.|++++.+|.-. +.+.....++.+|.|||+-..+
T Consensus 15 ~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~l~~~d~viftS~~a 61 (240)
T 3mw8_A 15 AMASALDALAIPYLVEPLLSVEAAAVTQAQLDELSRADILIFISTSA 61 (240)
T ss_dssp HHHHHHHHHTCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECSHHH
T ss_pred HHHHHHHHCCCcEEEeCcEEEeccccHHHHHHHhcCCCEEEEECHHH
Confidence 46789999999988776432 1222223357899999985543
No 195
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=37.48 E-value=69 Score=25.33 Aligned_cols=41 Identities=7% Similarity=0.085 Sum_probs=27.6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcC--CeEEEeecC
Q 025574 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAG--ARVIPLIYN 107 (250)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G--~~~v~i~~~ 107 (250)
.++.|.+.|.... ......+++.+++.+++.| +++..+...
T Consensus 3 kilii~gS~r~~~------~s~t~~la~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 3 KLLVVKAHPLTKE------ESRSVRALETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp EEEEEECCSSCTT------TCHHHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred eEEEEEecCCCCC------CCHHHHHHHHHHHHHHHhCCCCeEEEeeCC
Confidence 4677777775211 2345567777888898887 888777654
No 196
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=37.38 E-value=1.3e+02 Score=23.31 Aligned_cols=78 Identities=14% Similarity=0.029 Sum_probs=48.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHH-HHHHHcCCeEEEeecCCChhhHHHhcc--cCCEEEECCCCCCCccc
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYV-KFVESAGARVIPLIYNEPEDVLFEKLE--LVNGVLYTGGWAKDGLY 135 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v-~~le~~G~~~v~i~~~~~~~~l~~~l~--~~dgvIlpGG~~~~~~~ 135 (250)
.+|.|-+.+-+++.. -+...++ .+|+..|++++.+..+.+.+++.+.+. ++|.|.++.-.. .+
T Consensus 17 ~~~~vlla~~~gd~H-----------diG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~---~~ 82 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGH-----------DRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNG---AH 82 (161)
T ss_dssp CSCEEEEEEESSSSC-----------CHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSS---CH
T ss_pred CCCEEEEEeCCCCcc-----------HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeech---hh
Confidence 567766665554321 1233333 478999999998877677777655443 678888886533 33
Q ss_pred hHHHHHHHHHHHHhC
Q 025574 136 YAIVEKVFKKILEKN 150 (250)
Q Consensus 136 ~~~~~~li~~~~~~~ 150 (250)
.....++++.+.+.+
T Consensus 83 ~~~~~~~i~~L~~~g 97 (161)
T 2yxb_A 83 LHLMKRLMAKLRELG 97 (161)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC
Confidence 444556777765543
No 197
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=37.12 E-value=8.1 Score=23.80 Aligned_cols=15 Identities=13% Similarity=0.394 Sum_probs=11.6
Q ss_pred EEcccchhHHHHHHh
Q 025574 158 LYAHCLGFELLTMII 172 (250)
Q Consensus 158 ILGIClG~QlL~~~~ 172 (250)
.-|-|.|.|+|..+-
T Consensus 32 tagacfgaqimvaak 46 (48)
T 1ehs_A 32 TAGACFGAQIMVAAK 46 (48)
T ss_dssp SCCTTTTTHHHHTTT
T ss_pred ccccccchhHhhhcc
Confidence 457899999997543
No 198
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=35.69 E-value=1e+02 Score=25.99 Aligned_cols=40 Identities=10% Similarity=0.092 Sum_probs=27.9
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecC
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN 107 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~ 107 (250)
..++.|.++|.. .....-++..+++.+++.|+++..+...
T Consensus 3 mkiLiI~gSpr~--------~s~t~~la~~~~~~l~~~g~eV~~~dL~ 42 (273)
T 1d4a_A 3 RRALIVLAHSER--------TSFNYAMKEAAAAALKKKGWEVVESDLY 42 (273)
T ss_dssp CEEEEEECCSCT--------TSHHHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred CEEEEEEeCCCC--------ccHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 357778888853 1234556777888888889988877654
No 199
>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} PDB: 3hpd_A
Probab=35.53 E-value=1.8e+02 Score=24.41 Aligned_cols=77 Identities=19% Similarity=0.142 Sum_probs=47.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECCCCCCCccchHH
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI 138 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~~~~~~~~~~ 138 (250)
.+|+|==+|+.-. .....+.+-..|+.++... ..+++.+.++.+|.|++-.|-. .+...+.
T Consensus 14 ~~plvh~itn~v~---------------~~~~an~~la~gasp~M~~---~~~e~~~~~~~~dalvi~~G~~-~~~~~~~ 74 (265)
T 1v8a_A 14 RRPLVHNITNFVV---------------MNTTANALLALGASPVMAH---AEEELEEMIRLADAVVINIGTL-DSGWRRS 74 (265)
T ss_dssp HCCEEEEECCTTT---------------HHHHHHHHHHHTCEEEECC---CTTTHHHHHHHCSEEEEECTTC-CHHHHHH
T ss_pred cCCeEEEEcccee---------------ecchHHHHHhcCCCccccC---CHHHHHHHHHHCCEEEEEECCC-CHHHHHH
Confidence 4677776665532 2234467888999998864 3445556678899999944433 3333333
Q ss_pred HHHHHHHHHHhCCCCCCceEE
Q 025574 139 VEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 139 ~~~li~~~~~~~~~g~~~PIL 159 (250)
...+++.+.+.+ +|+.
T Consensus 75 ~~~~~~~a~~~~-----~pvV 90 (265)
T 1v8a_A 75 MVKATEIANELG-----KPIV 90 (265)
T ss_dssp HHHHHHHHHHHT-----CCEE
T ss_pred HHHHHHHHHHcC-----CcEE
Confidence 445566666666 7764
No 200
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=32.71 E-value=78 Score=23.14 Aligned_cols=42 Identities=17% Similarity=0.099 Sum_probs=29.9
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCC-ChhhHHHhcccCCEEEEC
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYT 126 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dgvIlp 126 (250)
+....++..+.+.+++.|..+..+.... +.+ .+..+|.|+|-
T Consensus 10 GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~----~l~~~d~iiig 52 (138)
T 5nul_A 10 GNTEKMAELIAKGIIESGKDVNTINVSDVNID----ELLNEDILILG 52 (138)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCEEEEGGGCCHH----HHTTCSEEEEE
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEEhhhCCHH----HHhhCCEEEEE
Confidence 4567788888899999998877776543 222 35678987773
No 201
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=32.54 E-value=2.1e+02 Score=24.15 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=34.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC-hhh----HHHhc-ccCCEEEECCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-EDV----LFEKL-ELVNGVLYTGG 128 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~-~~~----l~~~l-~~~dgvIlpGG 128 (250)
....||++..... + ....-+...+.+.+++.|..+.+.....+ .+. +...+ .++||||+.+.
T Consensus 60 ~~~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~ 127 (349)
T 1jye_A 60 QSLLIGVATSSLA-------L-HAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYP 127 (349)
T ss_dssp --CEEEEEESCTT-------S-HHHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEESC
T ss_pred CCCEEEEEeCCCC-------c-ccHHHHHHHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHHHCCCCEEEEecC
Confidence 3468999874321 1 11223445566778889998877654332 221 22222 46999999753
No 202
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=32.08 E-value=43 Score=26.17 Aligned_cols=92 Identities=11% Similarity=0.035 Sum_probs=47.8
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHc------CCeEEEeecCC------------------------C--
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA------GARVIPLIYNE------------------------P-- 109 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~------G~~~v~i~~~~------------------------~-- 109 (250)
++.|.+.+.. +.....+++.+.+.+++. |+++..+.... +
T Consensus 3 ilii~gS~r~--------~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (191)
T 1t0i_A 3 VGIIMGSVRA--------KRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSK 74 (191)
T ss_dssp EEEEECCCCS--------SCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHH
T ss_pred EEEEeCCCCC--------CCchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHH
Confidence 4556666642 134555666677778776 67777665321 0
Q ss_pred hhhHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchh
Q 025574 110 EDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (250)
Q Consensus 110 ~~~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~ 165 (250)
.+.+.+.+..+|+|||. .|.....+....+.++++... .-..+|++-++.|.
T Consensus 75 ~~~~~~~l~~aD~iI~~-sP~y~~~~p~~lK~~iD~~~~---~l~gK~~~~~~~G~ 126 (191)
T 1t0i_A 75 TRSWSRIVNALDIIVFV-TPQYNWGYPAALKNAIDRLYH---EWHGKPALVVSYGG 126 (191)
T ss_dssp HHHHHHHHHTCSEEEEE-EECBTTBCCHHHHHHHHTCST---TTTTCEEEEEEEET
T ss_pred HHHHHHHHHhCCEEEEE-eceECCCCCHHHHHHHHHHHh---hcCCCEEEEEEeCC
Confidence 02334557789998883 222212222334445554321 01127777665554
No 203
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=31.84 E-value=97 Score=26.66 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=27.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecC
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN 107 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~ 107 (250)
+.-|.++|... ....-+...+++.+++.|.+|.++...
T Consensus 25 iLII~aHP~~~--------S~n~aL~~~~~~~l~~~G~eV~v~DLy 62 (280)
T 4gi5_A 25 VLLIYAHPEPR--------SLNGALKNFAIRHLQQAGHEVQVSDLY 62 (280)
T ss_dssp EEEEECCSCTT--------SHHHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred EEEEEeCCCCc--------cHHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 66788988531 223446777889999999999887653
No 204
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=31.76 E-value=54 Score=29.01 Aligned_cols=41 Identities=27% Similarity=0.285 Sum_probs=31.3
Q ss_pred EEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHH
Q 025574 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLT 169 (250)
Q Consensus 122 gvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~ 169 (250)
||+-+||+. |.+-.....+++.++..+ .-|+||-.|++=|.
T Consensus 6 ~IltsGGda--pGmNaair~vv~~a~~~g-----~~v~Gi~~G~~GL~ 46 (320)
T 1pfk_A 6 GVLTSGGDA--PGMNAAIRGVVRSALTEG-----LEVMGIYDGYLGLY 46 (320)
T ss_dssp EEEECSSCC--TTHHHHHHHHHHHHHHTT-----CEEEEESTHHHHHH
T ss_pred EEEccCCCc--hhHHHHHHHHHHHHHHCC-----CEEEEEecChHHhc
Confidence 566777766 556556678888887766 78999999999774
No 205
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=31.72 E-value=84 Score=26.02 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCCeEEEeecCCCh---hhHHHhcccCCEEEEC
Q 025574 87 AASYVKFVESAGARVIPLIYNEPE---DVLFEKLELVNGVLYT 126 (250)
Q Consensus 87 ~~s~v~~le~~G~~~v~i~~~~~~---~~l~~~l~~~dgvIlp 126 (250)
.+.|.+++++.|..+......... +.+..+++.+|+|+.+
T Consensus 151 ~~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~~~~dai~~~ 193 (295)
T 3lft_A 151 VEEFKAYAEKAGLTVETFAVPSTNEIASTVTVMTSKVDAIWVP 193 (295)
T ss_dssp HHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHTTTCSEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHHHhcCCEEEEC
Confidence 456888899999877655433221 2233445678998886
No 206
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=31.33 E-value=1.3e+02 Score=22.32 Aligned_cols=40 Identities=23% Similarity=0.127 Sum_probs=26.6
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEE
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLY 125 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIl 125 (250)
+....++..+.+.++..|.++.++... +.+ .+...|.|||
T Consensus 13 GnT~~~A~~ia~~l~~~g~~v~~~~~~-~~~----~l~~~d~vi~ 52 (147)
T 2hna_A 13 GGAEYVAEHLAEKLEEAGFTTETLHGP-LLE----DLPASGIWLV 52 (147)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEEECCT-TSC----SSCSEEEEEE
T ss_pred hHHHHHHHHHHHHHHHCCCceEEecCC-CHH----HcccCCeEEE
Confidence 456678888888888888887766432 111 2556777666
No 207
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=29.69 E-value=1.6e+02 Score=25.06 Aligned_cols=95 Identities=14% Similarity=-0.002 Sum_probs=50.2
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCCh--hhH-HHhcccCCEEEECCCCCCCccchHH
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE--DVL-FEKLELVNGVLYTGGWAKDGLYYAI 138 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~--~~l-~~~l~~~dgvIlpGG~~~~~~~~~~ 138 (250)
.+.|+-+|..+.. ..... ...+.++|++.|..+.+....... .++ .+..+.+|.||..||-. +
T Consensus 10 ~~~vi~Np~sG~~------~~~~~-~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GGDG-------T 75 (304)
T 3s40_A 10 KVLLIVNPKAGQG------DLHTN-LTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGDG-------T 75 (304)
T ss_dssp SEEEEECTTCSSS------CHHHH-HHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEECHH-------H
T ss_pred EEEEEECcccCCC------chHHH-HHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEccch-------H
Confidence 3566667754221 11223 345778899999887665433221 111 22234689999988843 3
Q ss_pred HHHHHHHHHHhCCCCCCceEEcccchhH-HHHHHhc
Q 025574 139 VEKVFKKILEKNDAGDHFPLYAHCLGFE-LLTMIIS 173 (250)
Q Consensus 139 ~~~li~~~~~~~~~g~~~PILGIClG~Q-lL~~~~G 173 (250)
..++++.+.+. +...|+..|=.|-- -++..+|
T Consensus 76 l~~v~~~l~~~---~~~~~l~iiP~Gt~N~~ar~lg 108 (304)
T 3s40_A 76 VFECTNGLAPL---EIRPTLAIIPGGTCNDFSRTLG 108 (304)
T ss_dssp HHHHHHHHTTC---SSCCEEEEEECSSCCHHHHHTT
T ss_pred HHHHHHHHhhC---CCCCcEEEecCCcHHHHHHHcC
Confidence 33455555441 11277766655543 3444443
No 208
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=29.67 E-value=55 Score=28.94 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=31.5
Q ss_pred EEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEEcccchhHHHHH
Q 025574 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (250)
Q Consensus 122 gvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PILGIClG~QlL~~ 170 (250)
||+-+||+. |.+-.....+++.++..+ .-|+||-.|++=|..
T Consensus 5 ~IltsGGda--pGmNaair~vv~~a~~~g-----~~v~Gi~~G~~GL~~ 46 (319)
T 1zxx_A 5 GILTSGGDA--PGMNAAVRAVTRVAIANG-----LEVFGIRYGFAGLVA 46 (319)
T ss_dssp EEEECSSCC--TTHHHHHHHHHHHHHTTT-----CEEEEECTHHHHHHH
T ss_pred EEEccCCCc--hhHHHHHHHHHHHHHHCC-----CEEEEEccChHHHcC
Confidence 566777766 556555667888887666 789999999997753
No 209
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=29.12 E-value=2.5e+02 Score=24.28 Aligned_cols=47 Identities=9% Similarity=0.128 Sum_probs=32.1
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCC-ChhhHHHhcccCCEEEECC
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTG 127 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dgvIlpG 127 (250)
+....++..+.+.++..|..+..+.... +.+.+.+.+..+|+|||.-
T Consensus 264 Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~gs 311 (402)
T 1e5d_A 264 HSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGS 311 (402)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEEC
T ss_pred hhHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEEC
Confidence 3456667777778888888777776543 3444444567899998854
No 210
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=28.37 E-value=1.9e+02 Score=21.64 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=38.7
Q ss_pred HHHHHcCCeEEEeecCCChhhHHHhc--ccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEE
Q 025574 92 KFVESAGARVIPLIYNEPEDVLFEKL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 92 ~~le~~G~~~v~i~~~~~~~~l~~~l--~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PIL 159 (250)
.+|+..|.+++-+-.+.+.+++.+.. .++|.|.++.--. .+....+++++...+++.. .+||+
T Consensus 25 ~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~~~~---~~~~~~~~~i~~l~~~g~~--~i~v~ 89 (137)
T 1ccw_A 25 HAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYG---QGEIDCKGLRQKCDEAGLE--GILLY 89 (137)
T ss_dssp HHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSS---THHHHHTTHHHHHHHTTCT--TCEEE
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEecCc---CcHHHHHHHHHHHHhcCCC--CCEEE
Confidence 47899999998776566677665444 3688898887543 2233344556666554311 26663
No 211
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=28.36 E-value=2.4e+02 Score=22.90 Aligned_cols=81 Identities=14% Similarity=0.108 Sum_probs=48.4
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHH-HHHHHcCCeEEEeecCCChhhHHHhc--ccCCEEEECCCCCCCcc
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYV-KFVESAGARVIPLIYNEPEDVLFEKL--ELVNGVLYTGGWAKDGL 134 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v-~~le~~G~~~v~i~~~~~~~~l~~~l--~~~dgvIlpGG~~~~~~ 134 (250)
..+|.|-+.+-+++. +-+...++ ..|+..|++++-+-.+.+.+++.+.. .++|.|.++|.....+
T Consensus 90 ~~~~~vll~~v~gd~-----------HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~- 157 (215)
T 3ezx_A 90 EEAGLAITFVAEGDI-----------HDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTT- 157 (215)
T ss_dssp --CCEEEEEECTTCC-----------CCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHH-
T ss_pred CCCCeEEEEeCCCCh-----------hHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccC-
Confidence 345666666666542 22344444 36899999999887777877774433 3589999965554322
Q ss_pred chHHHHHHHHHHHHhC
Q 025574 135 YYAIVEKVFKKILEKN 150 (250)
Q Consensus 135 ~~~~~~~li~~~~~~~ 150 (250)
.....+++++.+.+.+
T Consensus 158 ~~~~~~~~i~~l~~~~ 173 (215)
T 3ezx_A 158 SMLGQKDLMDRLNEEK 173 (215)
T ss_dssp HHTHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHcC
Confidence 2223446666665543
No 212
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=28.33 E-value=1.2e+02 Score=23.33 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=30.6
Q ss_pred CcchhhHHHHHHHHHH-cCCeEEEeecCCC-----------------hhhHHHhcccCCEEEEC
Q 025574 81 TNASYIAASYVKFVES-AGARVIPLIYNEP-----------------EDVLFEKLELVNGVLYT 126 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~-~G~~~v~i~~~~~-----------------~~~l~~~l~~~dgvIlp 126 (250)
+....+++.+.+.+++ .|+++..+..... ... .+.+..+|+|||-
T Consensus 13 g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~aD~ii~g 75 (198)
T 3b6i_A 13 GHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVAT-PQELADYDAIIFG 75 (198)
T ss_dssp SHHHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCC-GGGGGGCSEEEEE
T ss_pred cHHHHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhh-HHHHHHCCEEEEE
Confidence 3466778888888988 8988887765431 001 2347789998873
No 213
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=27.81 E-value=1.3e+02 Score=22.08 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=29.0
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCCC-hhhHHHhcc-cCCEEEEC
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNEP-EDVLFEKLE-LVNGVLYT 126 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~~-~~~l~~~l~-~~dgvIlp 126 (250)
+....++..+.+.+++.|..+.++..... .+ .+. .+|.|||-
T Consensus 13 GnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~----~l~~~~d~ii~g 56 (148)
T 3f6r_A 13 GNTESIAQKLEELIAAGGHEVTLLNAADASAE----NLADGYDAVLFG 56 (148)
T ss_dssp SHHHHHHHHHHHHHHTTTCEEEEEETTTBCCT----TTTTTCSEEEEE
T ss_pred chHHHHHHHHHHHHHhCCCeEEEEehhhCCHh----HhcccCCEEEEE
Confidence 34667888888888888988887775431 22 255 78887764
No 214
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=27.78 E-value=2.1e+02 Score=23.01 Aligned_cols=52 Identities=17% Similarity=-0.021 Sum_probs=31.9
Q ss_pred EEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHH---HhcccCCEEEECC
Q 025574 63 IGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLF---EKLELVNGVLYTG 127 (250)
Q Consensus 63 IGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~---~~l~~~dgvIlpG 127 (250)
|||++...+ +....+++++++.|.+++.+..+...-.+. ..+..+|.++++.
T Consensus 2 I~il~~~~~-------------~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 56 (280)
T 1uc8_A 2 LAILYDRIR-------------PDERMLFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERC 56 (280)
T ss_dssp EEEEESSCC-------------HHHHHHHHHHHHHTCCEEEEEGGGCCEETTBCCGGGTTCCEEEECC
T ss_pred EEEEecCCC-------------HHHHHHHHHHHHcCCcEEEEehhhceeeccCCCcccCCCCEEEECC
Confidence 788875432 334567889999999998886543211110 1134678677765
No 215
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=27.70 E-value=1.4e+02 Score=25.64 Aligned_cols=60 Identities=12% Similarity=0.074 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCeEEEeecCCChhhHHHhcc-----cCCEEEECCCCCCCccchHHHHHHHHHHHHhC
Q 025574 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLE-----LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~-----~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~ 150 (250)
++...++..|++++.++.+ +.+.+.+.++ +...|+++......+.... .+++.+.+.+.+
T Consensus 144 ~~~~~~~~~g~~~~~v~~~-d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~-l~~i~~l~~~~~ 208 (401)
T 2bwn_A 144 SMIEGIKRNAGPKRIFRHN-DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP-IKEICDIAEEFG 208 (401)
T ss_dssp HHHHHHHHSCCCEEEECTT-CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC-HHHHHHHHHHHT
T ss_pred HHHHHHHHcCCeEEEEcCC-CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCC-HHHHHHHHHHcC
Confidence 3455677889999988875 5666666554 3456777654332221111 356666666665
No 216
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=27.62 E-value=81 Score=25.70 Aligned_cols=60 Identities=12% Similarity=0.177 Sum_probs=35.6
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeE--EEeecCCChhhHHHhcccCC----EEEECC
Q 025574 57 LNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARV--IPLIYNEPEDVLFEKLELVN----GVLYTG 127 (250)
Q Consensus 57 ~~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~--v~i~~~~~~~~l~~~l~~~d----gvIlpG 127 (250)
..++|+|||++-.. .+.-+.+...+.|++.|... .++....+++.+.++.+.+. .||+.|
T Consensus 19 ~~mkp~V~IimGS~-----------SD~~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~ 84 (181)
T 4b4k_A 19 SHMKSLVGVIMGST-----------SDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAG 84 (181)
T ss_dssp ---CCSEEEEESSG-----------GGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEE
T ss_pred CCCCccEEEEECCH-----------hHHHHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEe
Confidence 36899999988431 23335666778999999643 44444556777766554331 355555
No 217
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=26.74 E-value=1.2e+02 Score=24.33 Aligned_cols=43 Identities=9% Similarity=0.089 Sum_probs=28.2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHc--CCeEEEeec
Q 025574 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA--GARVIPLIY 106 (250)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~--G~~~v~i~~ 106 (250)
+|..++.|.++|.... .....-+.+.+++.+++. |+++..+..
T Consensus 3 mM~kiLiI~gSpr~~~------~S~s~~l~~~~~~~~~~~~~g~ev~~~dL 47 (211)
T 3p0r_A 3 AMTKVLFVKANNRPAE------QAVSVKLYEAFLASYKEAHPNDTVVELDL 47 (211)
T ss_dssp -CCEEEEEECCCSCTT------TCHHHHHHHHHHHHHHHHCTTSEEEEEEG
T ss_pred ccCEEEEEEeCCCCCC------CCHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 3566888888886111 123445667788888887 888877654
No 218
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=26.69 E-value=1.3e+02 Score=25.32 Aligned_cols=61 Identities=10% Similarity=0.012 Sum_probs=37.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhhHHH---h--cccCCEEEECCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFE---K--LELVNGVLYTGG 128 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~---~--l~~~dgvIlpGG 128 (250)
....||++..... .....-+...+.+.+++.|..+++..... .+...+ . -.++||||+.+.
T Consensus 63 ~~~~Igvi~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 63 RSALVGVIVPDLS--------NEYYSESLQTIQQDLKAAGYQMLVAEANS-VQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp -CCEEEEEESCSS--------SHHHHHHHHHHHHHHHHHTCEEEEEECCS-HHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCCEEEEEeCCCc--------ChHHHHHHHHHHHHHHHCCCEEEEECCCC-hHHHHHHHHHHHhCCCCEEEEcch
Confidence 4568999875421 11223345567778888899988776544 332111 1 147999999875
No 219
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=25.96 E-value=29 Score=28.25 Aligned_cols=44 Identities=7% Similarity=-0.065 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHcCCeEEEeecCCCh----hhHHHhc-ccCCEEEECCCC
Q 025574 86 IAASYVKFVESAGARVIPLIYNEPE----DVLFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~----~~l~~~l-~~~dgvIlpGG~ 129 (250)
+...+.+.+++.|..++......+. +.+.... .++||||+.+..
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 65 (276)
T 2h0a_A 17 LVEGIEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYD 65 (276)
T ss_dssp HHHHHHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecCC
Confidence 4455667778889988765433221 1222222 468999998754
No 220
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=25.04 E-value=1.7e+02 Score=24.68 Aligned_cols=62 Identities=19% Similarity=0.145 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCeEEEeecC-------CChhhHHHhcc--cCCEEEECCCCCCCccc-h-HHHHHHHHHHHHhC
Q 025574 89 SYVKFVESAGARVIPLIYN-------EPEDVLFEKLE--LVNGVLYTGGWAKDGLY-Y-AIVEKVFKKILEKN 150 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~-------~~~~~l~~~l~--~~dgvIlpGG~~~~~~~-~-~~~~~li~~~~~~~ 150 (250)
++...++..|++++.++.+ .+.+.+.+.++ +...|+++-.....+.. . ...+++.+.+.+.+
T Consensus 121 ~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~ 193 (391)
T 3dzz_A 121 MFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQ 193 (391)
T ss_dssp HHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCC
Confidence 3666788999999988763 35666666554 45566664432211111 1 23457777776665
No 221
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=24.82 E-value=97 Score=23.36 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=12.3
Q ss_pred HHHHHHHHHcCCeEEEee
Q 025574 88 ASYVKFVESAGARVIPLI 105 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~ 105 (250)
..+.+++.+.|.++.++.
T Consensus 31 ~~~~~~L~~~G~~V~~vn 48 (138)
T 1y81_A 31 NIILKDLLSKGFEVLPVN 48 (138)
T ss_dssp HHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHCCCEEEEeC
Confidence 345667888899866553
No 222
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=24.60 E-value=2.4e+02 Score=21.64 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCeEEEeecCC--------Chh-----hHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHh-CCCC
Q 025574 88 ASYVKFVESAGARVIPLIYNE--------PED-----VLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEK-NDAG 153 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~--------~~~-----~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~-~~~g 153 (250)
..+.++|+..|.+++..|... ..+ +..+....+|.++|--|- .++. .+++.+.++ +
T Consensus 64 ~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD---~DF~----plv~~lr~~~G--- 133 (165)
T 2qip_A 64 RQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGD---GDFS----LLVERIQQRYN--- 133 (165)
T ss_dssp HHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEECCC---GGGH----HHHHHHHHHHC---
T ss_pred HHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEEECC---hhHH----HHHHHHHHHcC---
Confidence 567889999999887555321 101 112234678887665552 2333 456777775 8
Q ss_pred CCceEEcccc
Q 025574 154 DHFPLYAHCL 163 (250)
Q Consensus 154 ~~~PILGICl 163 (250)
+.|.+++.
T Consensus 134 --~~V~v~g~ 141 (165)
T 2qip_A 134 --KKVTVYGV 141 (165)
T ss_dssp --CEEEEEEC
T ss_pred --cEEEEEeC
Confidence 89988874
No 223
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=24.58 E-value=1.2e+02 Score=24.01 Aligned_cols=76 Identities=12% Similarity=0.053 Sum_probs=40.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCC----------------------hhhHHHhccc
Q 025574 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP----------------------EDVLFEKLEL 119 (250)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~----------------------~~~l~~~l~~ 119 (250)
++.|.++|..+ ....-+++.+++.+ +.|.++..+..... .+.+.+.+..
T Consensus 3 iLiI~gspr~~--------s~t~~l~~~~~~~~-~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 73 (196)
T 3lcm_A 3 ILIVYTHPNPT--------SFNAEILKQVQTNL-SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTW 73 (196)
T ss_dssp EEEEECCSCTT--------SHHHHHHHHHHHHS-CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHH
T ss_pred EEEEEeCCCCC--------ChHHHHHHHHHHHh-cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHh
Confidence 56677777531 22334555555555 56888887765321 1233445677
Q ss_pred CCEEEECCCCCCCccchHHHHHHHHHHH
Q 025574 120 VNGVLYTGGWAKDGLYYAIVEKVFKKIL 147 (250)
Q Consensus 120 ~dgvIlpGG~~~~~~~~~~~~~li~~~~ 147 (250)
+|+|||. -|.....+....+.+++.+.
T Consensus 74 AD~iV~~-~P~y~~~~pa~LK~~iD~v~ 100 (196)
T 3lcm_A 74 ADHLIFI-FPIWWSGMPAILKGFIDRVF 100 (196)
T ss_dssp CSEEEEE-EECBTTBCCHHHHHHHHHHS
T ss_pred CCEEEEE-CchhhccccHHHHHHHHHHc
Confidence 8988874 22211122234456666653
No 224
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=24.35 E-value=1.6e+02 Score=24.38 Aligned_cols=61 Identities=3% Similarity=-0.072 Sum_probs=33.9
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCC----eEEE--eecCCChhhHH----Hhc-ccCCEEEECC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA----RVIP--LIYNEPEDVLF----EKL-ELVNGVLYTG 127 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~----~~v~--i~~~~~~~~l~----~~l-~~~dgvIlpG 127 (250)
....|||+. ... +...+-+.+.+.+.+++.|. .+.+ .....+.+... .+. +++||||+.|
T Consensus 7 ~t~~IGvi~-~~~--------~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~ 77 (302)
T 2qh8_A 7 KTAKVAVSQ-IVE--------HPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIA 77 (302)
T ss_dssp CCEEEEEEE-SSC--------CHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEES
T ss_pred CCcEEEEEE-ecc--------ChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC
Confidence 457899983 211 11233355667788888998 4433 33233333221 222 4699999986
Q ss_pred C
Q 025574 128 G 128 (250)
Q Consensus 128 G 128 (250)
.
T Consensus 78 ~ 78 (302)
T 2qh8_A 78 T 78 (302)
T ss_dssp H
T ss_pred h
Confidence 3
No 225
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=24.15 E-value=1.6e+02 Score=21.56 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=38.5
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHH-HHHHHHHHcCCeEEEeecC-------CChhhHHHhcccCCEEEECCCCCC
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAA-SYVKFVESAGARVIPLIYN-------EPEDVLFEKLELVNGVLYTGGWAK 131 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~-s~v~~le~~G~~~v~i~~~-------~~~~~l~~~l~~~dgvIlpGG~~~ 131 (250)
..+++|++.|.. -..+|+++ .+.++-++.|.++.+-... .+.+ .++.+|.||+.+.-.+
T Consensus 3 mkivaVtaCptG---------iAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~----~I~~AD~VIia~d~~v 69 (106)
T 2m1z_A 3 RKIIAVTACATG---------VAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEK----DVNIGEVVIFAVDTKV 69 (106)
T ss_dssp CEEEEEEECSSC---------HHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCCHH----HHHHCSEEEEEESSCC
T ss_pred ccEEEEEECCCc---------HHHHHHHHHHHHHHHHHCCCEEEEEEecCccccCCCCHH----HHhhCCEEEEeccccc
Confidence 468999998842 34678744 5667778889876543221 1223 3568999999876553
No 226
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=24.00 E-value=2.1e+02 Score=23.93 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHcCCeEEEeecCC-------------ChhhHHHhcccCCEEEECCCCC
Q 025574 84 SYIAASYVKFVESAGARVIPLIYNE-------------PEDVLFEKLELVNGVLYTGGWA 130 (250)
Q Consensus 84 ~~i~~s~v~~le~~G~~~v~i~~~~-------------~~~~l~~~l~~~dgvIlpGG~~ 130 (250)
.||...+++.|.+.|.+|+.+.... +.+.+.+.++.+|.||-..+..
T Consensus 29 G~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~ 88 (347)
T 4id9_A 29 GRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFM 88 (347)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCCC
T ss_pred ChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCccc
Confidence 4788889999999999887764321 3455666778999999988765
No 227
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=23.65 E-value=75 Score=26.78 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=27.9
Q ss_pred HHHHHHHHcCCeEEEeecCC----ChhhHHHh---cccCCEEEECCCCC
Q 025574 89 SYVKFVESAGARVIPLIYNE----PEDVLFEK---LELVNGVLYTGGWA 130 (250)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~----~~~~l~~~---l~~~dgvIlpGG~~ 130 (250)
.+.+.|++.|++++.+|.-. +.+.+... +..+|.|||+-..+
T Consensus 39 ~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~na 87 (286)
T 1jr2_A 39 PYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRA 87 (286)
T ss_dssp HHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHHH
T ss_pred HHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCHHH
Confidence 46678999999988766421 22333322 36789999996654
No 228
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=23.39 E-value=1.6e+02 Score=24.70 Aligned_cols=60 Identities=20% Similarity=0.033 Sum_probs=34.7
Q ss_pred HHHHHHHcCCeEEEee--cCC----ChhhHHHhcc------cCCEEEECCCCCCCccchHHHHHHHHHHHHhC
Q 025574 90 YVKFVESAGARVIPLI--YNE----PEDVLFEKLE------LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~--~~~----~~~~l~~~l~------~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~ 150 (250)
+...++..|++++.++ .+. +.+.+.+.++ +...|+++......+.... .+++.+.+.+.+
T Consensus 106 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~-~~~i~~~~~~~~ 177 (371)
T 2e7j_A 106 SYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD-VKKIAKVCSEYD 177 (371)
T ss_dssp HHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC-HHHHHHHHHTTT
T ss_pred HHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCC-HHHHHHHHHHcC
Confidence 4455788999999888 543 4566665554 4556777655321111111 256666665555
No 229
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=23.29 E-value=1.1e+02 Score=26.34 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=37.0
Q ss_pred chhhHHHHHHHHHHcCC-eEEEeecCCChhhHHHhcccCCEEEECCCC
Q 025574 83 ASYIAASYVKFVESAGA-RVIPLIYNEPEDVLFEKLELVNGVLYTGGW 129 (250)
Q Consensus 83 ~~~i~~s~v~~le~~G~-~~v~i~~~~~~~~l~~~l~~~dgvIlpGG~ 129 (250)
..+|.+.+++.|.+.|. +++.+....+.+.+.+.++++|.||-..|.
T Consensus 9 tG~iG~~l~~~L~~~g~~~v~~~d~~~d~~~l~~~~~~~d~Vih~a~~ 56 (369)
T 3st7_A 9 KGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALLKADFIVHLAGV 56 (369)
T ss_dssp TSHHHHHHHHHHHHHCCCEEEECCTTCCHHHHHHHHHHCSEEEECCCS
T ss_pred CCHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHhccCCEEEECCcC
Confidence 34788888899988898 888776534677888888899999987764
No 230
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=23.11 E-value=1.1e+02 Score=24.81 Aligned_cols=62 Identities=10% Similarity=0.014 Sum_probs=36.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCCC
Q 025574 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (250)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG~ 129 (250)
....||++... . . ....-+...+.+.+++.|..+++.....+.+. +.... .++||||+.+..
T Consensus 7 ~~~~Igvi~~~-~-~-------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 7 RSNIIAFIVPD-Q-N-------PFFTEVLTEISHECQKHHLHVAVASSEENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp CEEEEEEEESS-C-C-------HHHHHHHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CCCEEEEEECC-C-C-------chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 34689998743 2 1 11223444566777888998877665444332 22222 468999998764
No 231
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=22.91 E-value=2.9e+02 Score=22.89 Aligned_cols=63 Identities=11% Similarity=0.038 Sum_probs=33.7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcchhhHHHHHHHHHHcCCeEEEeecCCChhh----HHHhc-ccCCEEEECCC
Q 025574 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGG 128 (250)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~~~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dgvIlpGG 128 (250)
...||++....- .+....+-+.....+..++.|..+.......+.+. +.... +++||||+.|.
T Consensus 5 ~~~Ig~v~~~~~------~d~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~ 72 (296)
T 2hqb_A 5 GGMVGLLVEDTI------DDQGWNRKAYEGLLNIHSNLDVDVVLEEGVNSEQKAHRRIKELVDGGVNLIFGHGH 72 (296)
T ss_dssp -CEEEEECCCC----------CCTHHHHHHHHHHHHHSCCEEEEECCCCSHHHHHHHHHHHHHTTCCEEEECST
T ss_pred CcEEEEEECCCC------CCCcHHHHHHHHHHHHHHHhCCeEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEcCH
Confidence 357999874111 01122233445567788889988776543222222 22222 36999999864
No 232
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=22.72 E-value=1.9e+02 Score=25.03 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=31.2
Q ss_pred CcchhhHHHHHHHHHHcCCeEEEeecCC-ChhhHHHhcccCCEEEEC
Q 025574 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYT 126 (250)
Q Consensus 81 ~~~~~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dgvIlp 126 (250)
+....++..+.+.+++.|..+..+.... +.+.+.+.+..+|+|+|.
T Consensus 263 GnT~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~g 309 (398)
T 1ycg_A 263 LSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVG 309 (398)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEEE
T ss_pred cHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHCCEEEEE
Confidence 3456677778888888888777665532 234444456789999885
No 233
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=22.55 E-value=74 Score=27.59 Aligned_cols=68 Identities=12% Similarity=0.073 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHcCCeEEEee-cCCChhhHH----HhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhCCCCCCceEE
Q 025574 85 YIAASYVKFVESAGARVIPLI-YNEPEDVLF----EKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (250)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~-~~~~~~~l~----~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~~~g~~~PIL 159 (250)
-+.+.+.+.+++.|++++... |... .+.. +...++|.|+++|.+. .. .++...++.. |...|++
T Consensus 137 ~~~~~F~~~~~~~Gg~vv~~~~y~~~-~d~~~~l~~i~~~pDaV~~~~~~~-------~~-~~i~~~~~~~--g~~~pl~ 205 (325)
T 2h4a_A 137 RVGNAFNVRWQQLAGTDANIRYYNLP-ADVTYFVQENNSNTTALYAVASPT-------EL-AEXKGYLTNI--VPNLAIY 205 (325)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEEESST-THHHHHHHHSTTCCCEEEECCCHH-------HH-HHHHHHHTTT--CTTCEEE
T ss_pred HHHHHHHHHHHHcCCCcceeEecCCH-HHHHHHHHhcCCCCCEEEEeCCHH-------HH-hhhhhhHhhc--CCCCCEE
Confidence 356667888888888776443 3332 2332 2224689999986532 12 2333333322 4459999
Q ss_pred cccc
Q 025574 160 AHCL 163 (250)
Q Consensus 160 GICl 163 (250)
|.=.
T Consensus 206 ~~~~ 209 (325)
T 2h4a_A 206 ASSR 209 (325)
T ss_dssp ECGG
T ss_pred Eecc
Confidence 8754
No 234
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=22.52 E-value=2.5e+02 Score=24.33 Aligned_cols=12 Identities=25% Similarity=0.089 Sum_probs=8.9
Q ss_pred cCCEEEECCCCC
Q 025574 119 LVNGVLYTGGWA 130 (250)
Q Consensus 119 ~~dgvIlpGG~~ 130 (250)
.+|.|+-+|+..
T Consensus 179 GvdrILTSG~~~ 190 (287)
T 3iwp_A 179 GFERVLTSGCDS 190 (287)
T ss_dssp TCSEEEECTTSS
T ss_pred CCCEEECCCCCC
Confidence 678888888744
No 235
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.50 E-value=83 Score=23.08 Aligned_cols=29 Identities=38% Similarity=0.646 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCeEEEeecCCChhhHHH
Q 025574 87 AASYVKFVESAGARVIPLIYNEPEDVLFE 115 (250)
Q Consensus 87 ~~s~v~~le~~G~~~v~i~~~~~~~~l~~ 115 (250)
+...+++++++|+.+.++.|+.+...+.+
T Consensus 64 aekairfvkslgaqvliiiydqdqnrlee 92 (134)
T 2l69_A 64 AEKAIRFVKSLGAQVLIIIYDQDQNRLEE 92 (134)
T ss_dssp HHHHHHHHHHHCCCCEEEEECSCHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEEEeCchhHHHH
Confidence 34467899999999999999987666554
No 236
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=22.43 E-value=1.6e+02 Score=25.06 Aligned_cols=39 Identities=15% Similarity=-0.056 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCeEEEeecCCChhhHHHhcccCCEEEECC
Q 025574 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTG 127 (250)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dgvIlpG 127 (250)
..+.++|+..|..|..++...-.++. ..|+++|.||++-
T Consensus 20 ~~l~~aL~~~g~~V~~i~~~~~~~~~-~~L~~yDvIIl~d 58 (259)
T 3rht_A 20 GYLAGLMTSWQWEFDYIPSHVGLDVG-ELLAKQDLVILSD 58 (259)
T ss_dssp HHHHHHHHHTTCCCEEECTTSCBCSS-HHHHTCSEEEEES
T ss_pred HHHHHHHHhCCceEEEecccccccCh-hHHhcCCEEEEcC
Confidence 34556899999999888754322211 2377899999984
No 237
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=21.88 E-value=2.2e+02 Score=23.86 Aligned_cols=60 Identities=25% Similarity=0.265 Sum_probs=36.7
Q ss_pred HHHHHHHcCCeEEEeecC----CChhhHHHhc---ccCCEEEECCCCCCCccchHHHHHHHHHHHHhC
Q 025574 90 YVKFVESAGARVIPLIYN----EPEDVLFEKL---ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~~~----~~~~~l~~~l---~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~ 150 (250)
+.+.++..|++++.++.+ .+.+.+.+.+ ++...|+++......+... ..+++.+.+.+.+
T Consensus 110 ~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~ 176 (386)
T 2dr1_A 110 YKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLN-PLPELAKVAKEHD 176 (386)
T ss_dssp HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEEC-CHHHHHHHHHHTT
T ss_pred HHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhC-CHHHHHHHHHHcC
Confidence 667788899999988864 3456666555 3567888874322111111 2356667776655
No 238
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=21.86 E-value=3.5e+02 Score=23.04 Aligned_cols=12 Identities=0% Similarity=-0.305 Sum_probs=9.0
Q ss_pred cCCEEEECCCCC
Q 025574 119 LVNGVLYTGGWA 130 (250)
Q Consensus 119 ~~dgvIlpGG~~ 130 (250)
.+|-||.+.|-.
T Consensus 66 ~~d~vV~Spgi~ 77 (326)
T 3eag_A 66 KADVYVIGNVAK 77 (326)
T ss_dssp CCSEEEECTTCC
T ss_pred CCCEEEECCCcC
Confidence 578888877654
No 239
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=21.46 E-value=1.4e+02 Score=23.92 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=27.6
Q ss_pred HHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHH--hCCCCCCceEEcccc
Q 025574 113 LFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILE--KNDAGDHFPLYAHCL 163 (250)
Q Consensus 113 l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~--~~~~g~~~PILGICl 163 (250)
+.+.++.+||+|+. -|.+...+....+.+++++-. ....=..||++=++.
T Consensus 61 l~~~i~~aD~~ii~-tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~ 112 (190)
T 3u7r_A 61 LKDRIEHSDAVLAI-TPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGT 112 (190)
T ss_dssp HHHHHHTSSEEEEE-CCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEE
T ss_pred HHHHHHhCCcEEEe-chhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEe
Confidence 34567889999885 233333444555666776521 111223489876653
No 240
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=26.96 E-value=20 Score=29.10 Aligned_cols=14 Identities=7% Similarity=0.299 Sum_probs=9.6
Q ss_pred HHHhcccCCEEEEC
Q 025574 113 LFEKLELVNGVLYT 126 (250)
Q Consensus 113 l~~~l~~~dgvIlp 126 (250)
+.+.+..+|+|||.
T Consensus 67 ~~~~i~~AD~iIi~ 80 (199)
T 3s2y_A 67 MAQQIATADAVVIV 80 (199)
Confidence 34456788988873
No 241
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=20.94 E-value=88 Score=25.12 Aligned_cols=51 Identities=4% Similarity=-0.023 Sum_probs=26.9
Q ss_pred hHHHhcccCCEEEECCCCCCCccchHHHHHHHHHHHHhC-CCCCCceEEcccc
Q 025574 112 VLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN-DAGDHFPLYAHCL 163 (250)
Q Consensus 112 ~l~~~l~~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~-~~g~~~PILGICl 163 (250)
.+.+.+..+|+|||. -|.+...+....+.+++++...+ ..=..||++=++-
T Consensus 66 ~~~~~i~~AD~iVi~-tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~t 117 (199)
T 4hs4_A 66 TMAQQIATADAVVIV-TPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTA 117 (199)
T ss_dssp HHHHHHHHSSEEEEE-ECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEE
T ss_pred HHHHHHHhCCEEEEE-cCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEe
Confidence 344567889998884 22222333345566677664311 1112377765554
No 242
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=20.49 E-value=2.2e+02 Score=23.95 Aligned_cols=61 Identities=13% Similarity=0.055 Sum_probs=35.4
Q ss_pred HHHHHHHcCCeEEEeecC--------CChhhHHHhcccCCEEEECCCCCCCccc-h-HHHHHHHHHHHHhC
Q 025574 90 YVKFVESAGARVIPLIYN--------EPEDVLFEKLELVNGVLYTGGWAKDGLY-Y-AIVEKVFKKILEKN 150 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~~~--------~~~~~l~~~l~~~dgvIlpGG~~~~~~~-~-~~~~~li~~~~~~~ 150 (250)
+...++..|++++.++.+ .+.+.+.+.++....|+++-.....+.. . ...+++.+.+.+.+
T Consensus 127 ~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~ 197 (391)
T 4dq6_A 127 FNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKDVKLFILCNPHNPVGRVWTKDELKKLGDICLKHN 197 (391)
T ss_dssp HHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhcCCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcC
Confidence 556788899999988765 2556666666554555554321111111 1 23456777776665
No 243
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=20.41 E-value=2.4e+02 Score=23.64 Aligned_cols=60 Identities=23% Similarity=0.183 Sum_probs=36.3
Q ss_pred HHHHHHHcCCeEEEeecCC----ChhhHHHhcc--cCCEEEECCCCCCCccchHHHHHHHHHHHHhC
Q 025574 90 YVKFVESAGARVIPLIYNE----PEDVLFEKLE--LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (250)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~----~~~~l~~~l~--~~dgvIlpGG~~~~~~~~~~~~~li~~~~~~~ 150 (250)
+.+.++..|++++.++.+. +.+.+.+.++ +...|++.-.....+... ..+++.+.+.+.+
T Consensus 136 ~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~ 201 (397)
T 3f9t_A 136 FEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTID-NIEELSKIAKENN 201 (397)
T ss_dssp HHHHHHHHTCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBC-CHHHHHHHHHHHT
T ss_pred HHHHHHHcCceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCC-CHHHHHHHHHHhC
Confidence 5567788899999988763 4556655554 466777655433222111 2446677776666
Done!