Query 025575
Match_columns 250
No_of_seqs 166 out of 1215
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:13:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025575.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025575hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 9E-55 1.9E-59 379.5 24.1 215 5-221 1-220 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 1.1E-52 2.4E-57 361.1 22.8 224 5-230 12-241 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 4.5E-51 9.8E-56 345.0 18.3 191 4-214 2-199 (280)
4 TIGR01293 Kv_beta voltage-depe 100.0 2.2E-49 4.9E-54 347.1 23.6 210 7-220 1-219 (317)
5 PRK09912 L-glyceraldehyde 3-ph 100.0 2.8E-49 6E-54 350.2 23.0 213 4-220 12-236 (346)
6 PRK10625 tas putative aldo-ket 100.0 4.2E-48 9.1E-53 342.9 23.3 211 5-220 1-247 (346)
7 KOG1577 Aldo/keto reductase fa 100.0 2.6E-48 5.7E-53 328.4 17.2 191 1-213 1-215 (300)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 2.7E-47 5.9E-52 329.0 24.0 205 7-217 1-209 (285)
9 PLN02587 L-galactose dehydroge 100.0 3.7E-47 8.1E-52 332.7 21.4 206 7-218 1-216 (314)
10 PRK10376 putative oxidoreducta 100.0 2.5E-45 5.4E-50 317.7 23.1 209 1-211 1-218 (290)
11 PRK11172 dkgB 2,5-diketo-D-glu 100.0 2.7E-44 6E-49 307.8 20.8 179 16-214 2-187 (267)
12 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.8E-44 4E-49 311.0 19.8 195 19-219 1-200 (283)
13 PRK14863 bifunctional regulato 100.0 2.9E-44 6.3E-49 310.9 18.3 189 14-214 2-200 (292)
14 COG4989 Predicted oxidoreducta 100.0 4.8E-44 1E-48 291.4 14.5 209 5-216 1-219 (298)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 2.8E-42 6E-47 296.4 20.1 183 7-212 6-193 (275)
16 COG1453 Predicted oxidoreducta 100.0 4.8E-41 1E-45 287.6 15.0 230 5-247 1-238 (391)
17 KOG1576 Predicted oxidoreducta 100.0 1.2E-40 2.6E-45 273.5 15.7 212 4-218 21-241 (342)
18 KOG3023 Glutamate-cysteine lig 98.3 2.7E-06 5.8E-11 70.1 6.7 71 135-206 155-227 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 93.9 2.9 6.4E-05 36.5 14.2 155 36-211 134-291 (316)
20 COG0635 HemN Coproporphyrinoge 92.4 1 2.2E-05 41.3 9.3 109 17-161 148-276 (416)
21 PRK07945 hypothetical protein; 89.6 12 0.00027 33.1 13.2 151 37-203 110-288 (335)
22 cd03316 MR_like Mandelate race 89.5 15 0.00032 32.6 13.9 154 36-207 139-299 (357)
23 PRK08609 hypothetical protein; 88.5 7.7 0.00017 37.1 11.7 149 39-203 350-522 (570)
24 COG1748 LYS9 Saccharopine dehy 86.0 4.8 0.0001 36.4 8.3 82 37-132 78-159 (389)
25 cd03174 DRE_TIM_metallolyase D 83.9 6.8 0.00015 33.0 8.1 106 99-206 15-135 (265)
26 cd03315 MLE_like Muconate lact 82.8 28 0.00061 29.4 15.2 155 36-211 85-243 (265)
27 PRK06294 coproporphyrinogen II 82.3 11 0.00025 33.7 9.2 61 99-161 166-243 (370)
28 PRK13796 GTPase YqeH; Provisio 82.2 37 0.00081 30.4 13.4 137 19-166 35-178 (365)
29 PRK13958 N-(5'-phosphoribosyl) 82.1 5.8 0.00013 32.6 6.7 66 112-179 16-82 (207)
30 PRK07379 coproporphyrinogen II 82.0 10 0.00022 34.4 8.9 61 99-161 178-255 (400)
31 COG0135 TrpF Phosphoribosylant 82.0 10 0.00023 31.2 8.1 81 114-203 19-102 (208)
32 COG1140 NarY Nitrate reductase 82.0 0.62 1.4E-05 41.5 1.0 54 148-201 263-317 (513)
33 cd00308 enolase_like Enolase-s 81.8 16 0.00034 30.2 9.4 87 121-211 120-208 (229)
34 cd04740 DHOD_1B_like Dihydroor 81.0 35 0.00076 29.4 13.6 151 36-200 100-286 (296)
35 PRK08392 hypothetical protein; 81.0 29 0.00063 28.4 12.8 148 38-203 14-178 (215)
36 PRK14461 ribosomal RNA large s 79.3 19 0.00041 32.4 9.4 91 124-214 232-362 (371)
37 PRK09058 coproporphyrinogen II 77.7 12 0.00027 34.5 8.1 28 99-127 226-253 (449)
38 PRK05660 HemN family oxidoredu 77.3 19 0.00041 32.4 9.1 61 99-161 170-243 (378)
39 PF07021 MetW: Methionine bios 76.9 17 0.00036 29.6 7.6 151 42-213 5-173 (193)
40 cd02070 corrinoid_protein_B12- 76.3 40 0.00086 27.4 10.1 145 36-200 9-162 (201)
41 PRK10550 tRNA-dihydrouridine s 76.0 54 0.0012 28.7 12.8 132 36-178 73-223 (312)
42 PRK08446 coproporphyrinogen II 75.9 41 0.00089 29.9 10.7 61 99-161 161-231 (350)
43 PRK14462 ribosomal RNA large s 75.3 39 0.00084 30.3 10.3 89 126-214 226-348 (356)
44 PRK01222 N-(5'-phosphoribosyl) 75.1 9.6 0.00021 31.4 6.0 66 113-180 19-85 (210)
45 COG2069 CdhD CO dehydrogenase/ 74.8 58 0.0012 28.5 11.0 94 111-209 158-261 (403)
46 PRK00164 moaA molybdenum cofac 74.4 59 0.0013 28.4 13.7 147 35-203 49-227 (331)
47 TIGR00735 hisF imidazoleglycer 73.7 41 0.00089 28.4 9.8 90 110-202 161-253 (254)
48 TIGR02370 pyl_corrinoid methyl 73.7 35 0.00076 27.7 8.9 145 36-200 10-164 (197)
49 TIGR01502 B_methylAsp_ase meth 73.1 75 0.0016 29.1 12.1 87 121-208 264-357 (408)
50 TIGR00190 thiC thiamine biosyn 72.9 20 0.00043 32.5 7.7 136 41-202 80-219 (423)
51 PRK13347 coproporphyrinogen II 71.9 21 0.00045 33.1 8.0 61 99-161 215-291 (453)
52 cd03323 D-glucarate_dehydratas 71.6 79 0.0017 28.7 14.5 149 36-208 168-321 (395)
53 cd06543 GH18_PF-ChiA-like PF-C 70.9 71 0.0015 27.8 14.0 184 19-213 71-267 (294)
54 TIGR01278 DPOR_BchB light-inde 70.3 67 0.0015 30.2 11.2 132 66-209 69-243 (511)
55 cd00739 DHPS DHPS subgroup of 70.2 45 0.00097 28.4 9.1 102 100-207 21-128 (257)
56 KOG0259 Tyrosine aminotransfer 70.1 86 0.0019 28.5 13.1 165 16-214 62-247 (447)
57 PRK05628 coproporphyrinogen II 69.6 39 0.00084 30.3 9.1 28 99-127 171-198 (375)
58 PRK05414 urocanate hydratase; 68.6 17 0.00036 34.0 6.4 123 44-180 118-267 (556)
59 PRK13352 thiamine biosynthesis 68.6 28 0.0006 31.7 7.7 136 41-202 80-222 (431)
60 TIGR01228 hutU urocanate hydra 68.5 16 0.00035 34.0 6.3 123 44-180 109-258 (545)
61 TIGR03247 glucar-dehydr glucar 68.4 1E+02 0.0022 28.6 13.4 85 123-207 252-337 (441)
62 PRK15072 bifunctional D-altron 68.2 61 0.0013 29.4 10.2 83 121-207 232-316 (404)
63 cd03318 MLE Muconate Lactonizi 68.2 37 0.0008 30.2 8.7 68 138-205 227-296 (365)
64 PRK06582 coproporphyrinogen II 67.4 39 0.00085 30.6 8.7 61 99-161 173-250 (390)
65 PLN02363 phosphoribosylanthran 67.2 21 0.00046 30.4 6.5 73 101-179 56-129 (256)
66 cd00423 Pterin_binding Pterin 67.1 74 0.0016 26.9 9.9 104 100-209 21-130 (258)
67 TIGR02534 mucon_cyclo muconate 66.9 36 0.00078 30.4 8.3 71 138-208 226-298 (368)
68 PRK13803 bifunctional phosphor 66.8 37 0.0008 32.8 8.8 67 114-180 20-87 (610)
69 PRK08208 coproporphyrinogen II 66.5 39 0.00084 31.0 8.6 60 99-161 204-275 (430)
70 PRK07259 dihydroorotate dehydr 66.1 87 0.0019 27.0 11.7 153 36-200 102-289 (301)
71 COG2089 SpsE Sialic acid synth 65.7 98 0.0021 27.4 11.4 116 35-167 87-222 (347)
72 PRK04452 acetyl-CoA decarbonyl 65.4 77 0.0017 28.0 9.7 93 111-208 83-184 (319)
73 PF14871 GHL6: Hypothetical gl 65.3 18 0.0004 27.4 5.2 24 186-209 44-67 (132)
74 PRK13361 molybdenum cofactor b 65.1 97 0.0021 27.2 10.8 127 35-183 45-194 (329)
75 cd03322 rpsA The starvation se 65.1 1E+02 0.0022 27.5 15.0 146 36-207 126-273 (361)
76 PRK05799 coproporphyrinogen II 64.8 55 0.0012 29.2 9.1 28 99-127 162-189 (374)
77 TIGR00048 radical SAM enzyme, 64.7 34 0.00073 30.6 7.6 91 124-214 219-343 (355)
78 smart00642 Aamy Alpha-amylase 64.7 9.7 0.00021 30.1 3.7 21 189-209 73-93 (166)
79 PF05690 ThiG: Thiazole biosyn 64.5 48 0.001 27.9 7.8 168 18-206 9-182 (247)
80 TIGR00538 hemN oxygen-independ 63.8 39 0.00084 31.2 8.1 61 99-161 214-290 (455)
81 PF00682 HMGL-like: HMGL-like 63.7 58 0.0013 26.9 8.5 119 36-168 12-143 (237)
82 PF13378 MR_MLE_C: Enolase C-t 63.0 11 0.00023 27.3 3.5 51 157-207 3-54 (111)
83 PRK14463 ribosomal RNA large s 62.9 1.1E+02 0.0023 27.4 10.4 93 124-217 211-337 (349)
84 PRK14459 ribosomal RNA large s 62.7 54 0.0012 29.6 8.5 87 123-209 241-358 (373)
85 PRK08599 coproporphyrinogen II 62.6 59 0.0013 29.1 8.9 61 99-161 163-240 (377)
86 COG0218 Predicted GTPase [Gene 62.2 87 0.0019 25.7 10.3 101 37-148 90-198 (200)
87 cd03314 MAL Methylaspartate am 61.8 78 0.0017 28.5 9.4 84 123-206 229-319 (369)
88 CHL00076 chlB photochlorophyll 61.4 1.4E+02 0.0031 28.1 11.5 89 121-209 117-248 (513)
89 PRK07328 histidinol-phosphatas 61.0 1E+02 0.0022 26.1 13.8 106 38-155 18-159 (269)
90 cd03317 NAAAR N-acylamino acid 60.3 1.2E+02 0.0026 26.7 14.3 148 38-208 139-288 (354)
91 PRK12928 lipoyl synthase; Prov 60.1 1E+02 0.0022 26.8 9.5 77 133-210 185-282 (290)
92 PRK09061 D-glutamate deacylase 60.1 1E+02 0.0023 28.9 10.3 113 39-157 170-283 (509)
93 cd02930 DCR_FMN 2,4-dienoyl-Co 59.9 1.3E+02 0.0027 26.8 13.2 97 79-178 202-305 (353)
94 PRK14457 ribosomal RNA large s 59.8 1.1E+02 0.0024 27.2 10.0 105 105-209 196-329 (345)
95 cd00740 MeTr MeTr subgroup of 59.3 1.1E+02 0.0024 25.9 11.3 106 100-211 23-131 (252)
96 PRK14017 galactonate dehydrata 59.2 97 0.0021 27.8 9.7 83 121-207 203-287 (382)
97 PF01175 Urocanase: Urocanase; 58.7 29 0.00062 32.5 6.0 126 42-181 106-258 (546)
98 PF00682 HMGL-like: HMGL-like 58.3 63 0.0014 26.7 7.8 97 100-202 11-124 (237)
99 PRK05692 hydroxymethylglutaryl 58.2 20 0.00043 31.0 4.9 103 100-205 23-139 (287)
100 PRK14465 ribosomal RNA large s 58.2 1E+02 0.0022 27.5 9.3 86 124-209 216-328 (342)
101 PRK00730 rnpA ribonuclease P; 57.7 70 0.0015 24.6 7.2 63 78-148 46-110 (138)
102 COG3623 SgaU Putative L-xylulo 57.1 10 0.00022 31.9 2.6 76 12-89 65-156 (287)
103 cd03321 mandelate_racemase Man 56.7 1.4E+02 0.0031 26.4 13.5 151 37-205 142-294 (355)
104 PRK14460 ribosomal RNA large s 56.6 1.2E+02 0.0027 27.1 9.7 101 113-214 208-342 (354)
105 cd07943 DRE_TIM_HOA 4-hydroxy- 56.2 1.1E+02 0.0023 26.0 9.0 104 100-205 19-131 (263)
106 TIGR01928 menC_lowGC/arch o-su 56.2 1.4E+02 0.003 26.1 14.5 153 36-211 132-286 (324)
107 PLN00191 enolase 56.2 1.6E+02 0.0034 27.5 10.6 96 101-205 296-394 (457)
108 TIGR00676 fadh2 5,10-methylene 55.3 1.3E+02 0.0029 25.6 11.6 148 38-202 15-186 (272)
109 PRK02901 O-succinylbenzoate sy 55.3 1.4E+02 0.003 26.4 9.8 71 139-211 173-244 (327)
110 PLN02746 hydroxymethylglutaryl 55.2 31 0.00066 30.8 5.6 98 104-206 68-182 (347)
111 TIGR02026 BchE magnesium-proto 54.0 1.4E+02 0.0031 27.9 10.1 67 132-200 319-392 (497)
112 TIGR01927 menC_gamma/gm+ o-suc 53.8 1.2E+02 0.0027 26.3 9.2 72 140-211 196-269 (307)
113 COG2949 SanA Uncharacterized m 53.5 1.3E+02 0.0028 24.9 9.5 97 105-207 78-181 (235)
114 PRK09249 coproporphyrinogen II 53.2 69 0.0015 29.6 7.8 112 41-161 151-290 (453)
115 PRK14466 ribosomal RNA large s 52.7 74 0.0016 28.4 7.6 92 123-214 210-335 (345)
116 PRK14453 chloramphenicol/florf 52.4 1.7E+02 0.0037 26.1 10.8 96 119-214 203-340 (347)
117 PRK06740 histidinol-phosphatas 51.8 1.7E+02 0.0037 25.8 12.4 25 36-60 59-83 (331)
118 PRK09427 bifunctional indole-3 51.8 45 0.00097 31.0 6.3 64 113-180 273-337 (454)
119 TIGR03471 HpnJ hopanoid biosyn 51.7 1.4E+02 0.0031 27.6 9.7 68 133-202 320-394 (472)
120 PRK05588 histidinol-phosphatas 51.4 1.5E+02 0.0032 24.9 9.4 105 37-155 15-143 (255)
121 KOG1185 Thiamine pyrophosphate 51.4 2.2E+02 0.0047 26.9 11.2 54 156-214 199-259 (571)
122 PRK07094 biotin synthase; Prov 51.1 1.1E+02 0.0023 26.7 8.4 115 36-169 71-202 (323)
123 TIGR01496 DHPS dihydropteroate 51.1 1.5E+02 0.0033 25.1 10.5 100 100-206 20-125 (257)
124 PRK06256 biotin synthase; Vali 50.8 1.7E+02 0.0037 25.6 10.1 118 35-168 91-222 (336)
125 PRK00077 eno enolase; Provisio 50.2 2.1E+02 0.0045 26.3 11.3 96 100-204 261-361 (425)
126 TIGR00539 hemN_rel putative ox 49.7 1.6E+02 0.0035 26.1 9.4 28 99-127 163-190 (360)
127 COG1168 MalY Bifunctional PLP- 49.7 2E+02 0.0044 26.0 10.9 140 36-205 39-197 (388)
128 TIGR00126 deoC deoxyribose-pho 49.6 1.2E+02 0.0025 25.0 7.9 72 36-120 130-205 (211)
129 PF03102 NeuB: NeuB family; I 49.5 1.4E+02 0.003 25.2 8.4 110 35-164 53-185 (241)
130 PTZ00413 lipoate synthase; Pro 49.4 2.1E+02 0.0045 26.1 12.1 160 34-211 176-374 (398)
131 PRK08776 cystathionine gamma-s 48.7 2.1E+02 0.0046 26.0 11.0 87 122-212 100-188 (405)
132 COG3215 PilZ Tfp pilus assembl 48.1 87 0.0019 22.7 5.8 54 36-91 18-71 (117)
133 PRK14464 ribosomal RNA large s 47.9 1.5E+02 0.0032 26.5 8.7 83 132-214 222-327 (344)
134 PF05913 DUF871: Bacterial pro 47.6 9.7 0.00021 34.1 1.2 156 36-209 12-179 (357)
135 PF00072 Response_reg: Respons 47.4 74 0.0016 22.0 5.8 61 117-180 40-102 (112)
136 cd03320 OSBS o-Succinylbenzoat 47.3 1.1E+02 0.0024 25.8 7.7 84 121-209 153-237 (263)
137 PRK06015 keto-hydroxyglutarate 47.0 69 0.0015 26.2 6.0 60 138-204 42-102 (201)
138 cd07944 DRE_TIM_HOA_like 4-hyd 46.6 1.8E+02 0.004 24.7 9.5 103 99-204 16-127 (266)
139 PRK14456 ribosomal RNA large s 46.5 1.4E+02 0.003 26.9 8.4 77 133-209 259-352 (368)
140 PLN02438 inositol-3-phosphate 46.3 1.3E+02 0.0028 28.3 8.2 50 102-151 206-259 (510)
141 cd04742 NPD_FabD 2-Nitropropan 46.2 99 0.0022 28.4 7.5 88 113-207 7-103 (418)
142 PLN02389 biotin synthase 46.1 2.3E+02 0.0049 25.6 12.5 101 35-150 116-227 (379)
143 TIGR01290 nifB nitrogenase cof 46.1 2.5E+02 0.0053 26.0 11.0 111 98-211 58-199 (442)
144 cd02801 DUS_like_FMN Dihydrour 46.0 1.6E+02 0.0035 23.9 10.1 133 36-179 65-213 (231)
145 PLN02428 lipoic acid synthase 45.9 1.7E+02 0.0038 26.1 8.8 158 36-211 131-326 (349)
146 COG4464 CapC Capsular polysacc 45.3 1.8E+02 0.004 24.3 9.3 40 36-75 18-60 (254)
147 COG3172 NadR Predicted ATPase/ 44.9 84 0.0018 25.1 5.9 96 49-149 78-185 (187)
148 PRK15440 L-rhamnonate dehydrat 44.9 1.6E+02 0.0034 26.8 8.6 68 138-205 247-318 (394)
149 PF02581 TMP-TENI: Thiamine mo 44.8 1.3E+02 0.0028 23.8 7.3 72 126-206 76-156 (180)
150 PLN02775 Probable dihydrodipic 44.6 1.7E+02 0.0037 25.4 8.4 58 109-170 68-125 (286)
151 TIGR01182 eda Entner-Doudoroff 44.2 74 0.0016 26.1 5.8 88 101-204 18-106 (204)
152 PRK00912 ribonuclease P protei 43.3 1.9E+02 0.0041 23.9 11.5 140 37-204 15-172 (237)
153 cd00405 PRAI Phosphoribosylant 43.1 1.7E+02 0.0036 23.6 7.9 41 120-164 73-113 (203)
154 PRK14455 ribosomal RNA large s 43.0 2E+02 0.0043 25.7 8.9 86 124-209 223-336 (356)
155 PRK08255 salicylyl-CoA 5-hydro 42.9 3.5E+02 0.0076 26.9 13.5 119 79-207 616-743 (765)
156 PTZ00081 enolase; Provisional 42.7 2.8E+02 0.006 25.7 10.3 96 100-204 281-381 (439)
157 PRK11194 ribosomal RNA large s 42.6 2.5E+02 0.0053 25.4 9.4 90 125-214 221-347 (372)
158 PRK02910 light-independent pro 42.2 3E+02 0.0066 26.0 11.0 131 66-209 69-243 (519)
159 cd04734 OYE_like_3_FMN Old yel 42.2 2.5E+02 0.0053 24.9 13.6 40 139-178 274-314 (343)
160 TIGR03597 GTPase_YqeH ribosome 42.1 2.5E+02 0.0055 25.0 11.6 136 18-164 28-170 (360)
161 COG0820 Predicted Fe-S-cluster 41.6 2.6E+02 0.0057 25.0 9.3 85 124-209 216-329 (349)
162 TIGR01060 eno phosphopyruvate 41.6 2.8E+02 0.0061 25.4 11.1 95 101-204 263-362 (425)
163 PRK05904 coproporphyrinogen II 41.2 2.4E+02 0.0051 25.2 9.1 28 99-127 166-193 (353)
164 PRK12331 oxaloacetate decarbox 41.1 2.2E+02 0.0047 26.5 9.0 98 101-204 24-141 (448)
165 PF01053 Cys_Met_Meta_PP: Cys/ 40.9 1.2E+02 0.0025 27.6 7.1 80 135-214 104-186 (386)
166 COG0502 BioB Biotin synthase a 40.9 1.7E+02 0.0036 26.1 7.8 132 36-185 85-233 (335)
167 KOG1576 Predicted oxidoreducta 40.7 81 0.0017 27.4 5.6 138 36-202 118-270 (342)
168 PRK05283 deoxyribose-phosphate 40.7 2.3E+02 0.005 24.2 9.1 78 36-122 144-227 (257)
169 PRK10605 N-ethylmaleimide redu 40.7 2.7E+02 0.0058 24.9 14.4 93 83-178 227-320 (362)
170 TIGR01862 N2-ase-Ialpha nitrog 40.5 2.9E+02 0.0063 25.4 9.8 137 58-208 96-271 (443)
171 cd07943 DRE_TIM_HOA 4-hydroxy- 40.5 2.2E+02 0.0049 24.0 15.5 23 36-58 20-42 (263)
172 KOG0996 Structural maintenance 40.2 28 0.00061 35.8 3.2 75 135-212 599-678 (1293)
173 COG2987 HutU Urocanate hydrata 39.9 68 0.0015 29.7 5.3 103 64-180 148-267 (561)
174 cd01974 Nitrogenase_MoFe_beta 39.9 2.5E+02 0.0053 25.8 9.2 109 57-176 63-191 (435)
175 cd02932 OYE_YqiM_FMN Old yello 39.8 2.6E+02 0.0057 24.5 12.8 94 79-178 219-319 (336)
176 COG0626 MetC Cystathionine bet 39.8 1.7E+02 0.0037 26.7 7.9 80 135-214 112-194 (396)
177 PF01118 Semialdhyde_dh: Semia 39.8 45 0.00096 24.5 3.6 27 36-62 75-101 (121)
178 cd03313 enolase Enolase: Enola 39.7 3E+02 0.0064 25.1 10.9 96 100-204 261-361 (408)
179 COG1751 Uncharacterized conser 39.6 1.9E+02 0.0041 22.8 7.6 83 125-208 3-92 (186)
180 PRK02399 hypothetical protein; 39.2 89 0.0019 28.5 6.0 57 108-170 200-270 (406)
181 TIGR02631 xylA_Arthro xylose i 39.2 2.9E+02 0.0064 24.9 12.7 41 18-58 7-52 (382)
182 PRK07535 methyltetrahydrofolat 39.2 2.4E+02 0.0053 24.0 10.2 99 101-206 23-123 (261)
183 TIGR01861 ANFD nitrogenase iro 39.2 3.4E+02 0.0074 25.7 10.1 138 58-208 106-282 (513)
184 PF01081 Aldolase: KDPG and KH 39.0 76 0.0016 25.9 5.1 59 139-204 47-106 (196)
185 COG3589 Uncharacterized conser 38.9 1.4E+02 0.003 26.6 6.9 159 35-211 13-182 (360)
186 COG1751 Uncharacterized conser 38.8 1.3E+02 0.0027 23.7 5.9 73 36-118 12-84 (186)
187 cd03329 MR_like_4 Mandelate ra 38.8 2.8E+02 0.0062 24.6 14.9 152 36-206 143-299 (368)
188 cd03325 D-galactonate_dehydrat 38.7 2.8E+02 0.0061 24.5 15.3 153 36-206 123-285 (352)
189 cd02803 OYE_like_FMN_family Ol 38.7 2.6E+02 0.0057 24.2 13.1 93 80-178 207-310 (327)
190 PF01207 Dus: Dihydrouridine s 38.7 1.4E+02 0.0029 26.1 7.0 133 36-178 64-212 (309)
191 TIGR01430 aden_deam adenosine 38.7 2.6E+02 0.0057 24.2 13.5 105 101-210 138-243 (324)
192 cd00248 Mth938-like Mth938-lik 38.5 1.2E+02 0.0026 22.0 5.7 51 157-207 37-87 (109)
193 PF01904 DUF72: Protein of unk 38.4 2.3E+02 0.005 23.5 11.5 131 52-207 19-150 (230)
194 KOG0059 Lipid exporter ABCA1 a 38.3 1.9E+02 0.0041 29.4 8.8 71 99-171 669-768 (885)
195 cd03327 MR_like_2 Mandelate ra 38.2 2.8E+02 0.0061 24.4 15.0 153 36-206 120-280 (341)
196 smart00052 EAL Putative diguan 38.0 2.1E+02 0.0046 23.0 7.9 100 103-206 99-210 (241)
197 PRK10551 phage resistance prot 38.0 84 0.0018 29.6 6.0 112 81-206 349-474 (518)
198 cd02933 OYE_like_FMN Old yello 37.9 2.9E+02 0.0062 24.5 14.0 24 36-59 143-173 (338)
199 PRK08247 cystathionine gamma-s 37.7 1.9E+02 0.004 25.7 7.9 64 151-214 116-181 (366)
200 TIGR03217 4OH_2_O_val_ald 4-hy 37.6 2.9E+02 0.0063 24.4 9.6 99 106-205 26-133 (333)
201 PF13407 Peripla_BP_4: Peripla 37.2 2.3E+02 0.0049 23.1 8.5 49 102-156 13-61 (257)
202 PF02679 ComA: (2R)-phospho-3- 37.1 37 0.00081 28.7 3.1 97 107-204 25-131 (244)
203 PRK14469 ribosomal RNA large s 37.1 2.9E+02 0.0062 24.5 9.0 86 124-209 212-324 (343)
204 PRK12581 oxaloacetate decarbox 37.1 3.6E+02 0.0077 25.3 13.6 151 36-200 103-263 (468)
205 PF07994 NAD_binding_5: Myo-in 37.1 1.1E+02 0.0024 26.7 6.1 95 101-204 130-230 (295)
206 TIGR00737 nifR3_yhdG putative 37.1 2.8E+02 0.0061 24.1 12.5 134 36-179 73-222 (319)
207 TIGR03822 AblA_like_2 lysine-2 36.7 2.9E+02 0.0063 24.2 11.4 90 124-213 140-241 (321)
208 COG2055 Malate/L-lactate dehyd 36.6 2.9E+02 0.0062 24.8 8.6 88 99-204 5-113 (349)
209 TIGR02814 pfaD_fam PfaD family 36.5 1.7E+02 0.0036 27.2 7.4 67 140-207 34-108 (444)
210 PRK08195 4-hyroxy-2-oxovalerat 36.3 3.1E+02 0.0067 24.3 10.3 108 96-205 18-134 (337)
211 PRK02083 imidazole glycerol ph 36.2 2.6E+02 0.0056 23.4 9.9 86 114-202 163-251 (253)
212 COG1104 NifS Cysteine sulfinat 36.0 1.1E+02 0.0024 27.8 6.1 77 136-214 102-186 (386)
213 COG1131 CcmA ABC-type multidru 35.9 1.1E+02 0.0023 26.6 5.9 62 105-169 141-205 (293)
214 COG1801 Uncharacterized conser 35.7 2.8E+02 0.0061 23.7 11.6 110 18-133 3-116 (263)
215 PRK09536 btuD corrinoid ABC tr 35.7 1.2E+02 0.0025 27.7 6.3 74 138-211 279-352 (402)
216 COG2896 MoaA Molybdenum cofact 35.4 81 0.0018 27.9 5.0 94 35-150 43-151 (322)
217 cd04731 HisF The cyclase subun 35.4 2.6E+02 0.0056 23.1 12.6 85 111-198 156-243 (243)
218 PHA02128 hypothetical protein 34.9 1.4E+02 0.0029 21.9 5.2 69 137-205 61-150 (151)
219 TIGR02026 BchE magnesium-proto 34.8 3.9E+02 0.0084 25.0 11.2 48 99-149 221-268 (497)
220 COG4992 ArgD Ornithine/acetylo 34.7 2.3E+02 0.005 25.9 7.8 48 161-208 174-227 (404)
221 TIGR02080 O_succ_thio_ly O-suc 34.6 3.4E+02 0.0074 24.3 10.9 87 122-212 91-179 (382)
222 cd02810 DHOD_DHPD_FMN Dihydroo 34.5 2.9E+02 0.0063 23.5 11.8 130 36-178 109-271 (289)
223 TIGR00314 cdhA CO dehydrogenas 34.5 1.7E+02 0.0038 29.1 7.5 73 136-214 247-336 (784)
224 PRK10415 tRNA-dihydrouridine s 34.5 3.2E+02 0.0069 24.0 11.8 134 36-179 75-224 (321)
225 PRK00507 deoxyribose-phosphate 34.4 1.6E+02 0.0035 24.4 6.5 40 36-75 134-174 (221)
226 cd01297 D-aminoacylase D-amino 34.4 3.5E+02 0.0076 24.4 11.6 123 38-170 167-298 (415)
227 TIGR01210 conserved hypothetic 34.1 3.2E+02 0.0069 23.9 14.2 163 36-214 86-260 (313)
228 COG4943 Predicted signal trans 33.9 2.3E+02 0.005 26.6 7.8 138 67-217 341-503 (524)
229 TIGR03849 arch_ComA phosphosul 33.8 1.5E+02 0.0033 25.0 6.2 95 107-203 12-117 (237)
230 COG1179 Dinucleotide-utilizing 33.6 3E+02 0.0066 23.5 9.9 16 189-204 136-151 (263)
231 COG2040 MHT1 Homocysteine/sele 33.5 3.3E+02 0.0071 23.8 10.3 167 37-207 42-241 (300)
232 PF00697 PRAI: N-(5'phosphorib 33.5 45 0.00099 27.0 3.0 82 112-203 14-96 (197)
233 PF05049 IIGP: Interferon-indu 33.3 1.1E+02 0.0024 27.6 5.7 74 57-132 122-202 (376)
234 PF07476 MAAL_C: Methylasparta 33.3 1.5E+02 0.0032 24.9 5.9 102 99-204 85-194 (248)
235 TIGR03822 AblA_like_2 lysine-2 33.0 3.4E+02 0.0073 23.8 11.9 122 36-169 120-252 (321)
236 COG0422 ThiC Thiamine biosynth 32.9 3.4E+02 0.0074 24.7 8.4 102 36-154 76-181 (432)
237 PF05368 NmrA: NmrA-like famil 32.7 1.7E+02 0.0036 23.8 6.4 95 107-212 12-107 (233)
238 PRK14470 ribosomal RNA large s 32.7 3.6E+02 0.0077 24.0 9.2 86 124-209 208-321 (336)
239 PRK15108 biotin synthase; Prov 32.6 3.6E+02 0.0077 23.9 10.5 108 100-211 76-196 (345)
240 TIGR00035 asp_race aspartate r 32.3 2.9E+02 0.0062 22.8 10.2 62 101-163 15-88 (229)
241 KOG2264 Exostosin EXT1L [Signa 32.3 1.6E+02 0.0034 28.3 6.5 57 64-134 632-690 (907)
242 PF04748 Polysacc_deac_2: Dive 32.1 2.6E+02 0.0056 23.0 7.3 51 36-89 72-128 (213)
243 PRK05968 hypothetical protein; 32.1 2.5E+02 0.0055 25.2 7.9 53 160-212 137-190 (389)
244 cd07939 DRE_TIM_NifV Streptomy 31.9 3.1E+02 0.0067 23.0 9.9 96 100-203 17-127 (259)
245 COG2200 Rtn c-di-GMP phosphodi 31.9 3.1E+02 0.0067 23.0 8.7 127 66-206 68-213 (256)
246 PRK06552 keto-hydroxyglutarate 31.8 1.9E+02 0.004 23.9 6.4 58 138-203 51-113 (213)
247 CHL00162 thiG thiamin biosynth 31.8 3.3E+02 0.0072 23.3 9.1 71 99-170 80-157 (267)
248 TIGR01329 cysta_beta_ly_E cyst 31.7 2.7E+02 0.0058 24.9 8.0 54 159-212 119-174 (378)
249 COG2159 Predicted metal-depend 31.7 3.4E+02 0.0074 23.5 9.1 97 113-211 55-169 (293)
250 COG0159 TrpA Tryptophan syntha 31.7 3.3E+02 0.0073 23.3 9.4 69 135-205 78-153 (265)
251 TIGR01305 GMP_reduct_1 guanosi 31.5 1.6E+02 0.0034 26.3 6.1 114 78-198 24-147 (343)
252 COG0135 TrpF Phosphoribosylant 31.2 2E+02 0.0043 23.7 6.4 97 36-160 11-111 (208)
253 PF13380 CoA_binding_2: CoA bi 31.2 2.1E+02 0.0045 20.9 6.7 54 119-204 54-107 (116)
254 COG0352 ThiE Thiamine monophos 31.0 1.3E+02 0.0029 24.8 5.4 76 124-208 83-167 (211)
255 PRK14041 oxaloacetate decarbox 31.0 3E+02 0.0064 25.8 8.2 15 109-123 30-44 (467)
256 KOG0369 Pyruvate carboxylase [ 30.9 3.3E+02 0.0072 26.9 8.5 144 38-211 43-196 (1176)
257 cd07944 DRE_TIM_HOA_like 4-hyd 30.9 3.3E+02 0.0072 23.1 14.8 24 36-59 18-41 (266)
258 cd01573 modD_like ModD; Quinol 30.8 1.9E+02 0.0041 24.8 6.5 38 140-178 172-209 (272)
259 PRK09358 adenosine deaminase; 30.6 3.7E+02 0.008 23.5 13.8 105 102-210 148-253 (340)
260 PRK10128 2-keto-3-deoxy-L-rham 30.5 3.5E+02 0.0075 23.2 10.7 157 11-211 90-265 (267)
261 PRK07535 methyltetrahydrofolat 30.5 3.4E+02 0.0074 23.1 10.0 26 135-160 173-200 (261)
262 COG4626 Phage terminase-like p 30.4 2.4E+02 0.0051 26.9 7.4 73 133-208 410-485 (546)
263 PRK08248 O-acetylhomoserine am 30.3 3E+02 0.0066 25.2 8.2 61 151-211 129-191 (431)
264 PF09989 DUF2229: CoA enzyme a 30.2 1.4E+02 0.0031 24.7 5.5 32 174-205 187-218 (221)
265 TIGR02660 nifV_homocitr homoci 30.0 4E+02 0.0087 23.8 9.1 97 99-203 19-130 (365)
266 PRK05718 keto-hydroxyglutarate 29.8 2.2E+02 0.0048 23.4 6.5 52 36-89 25-76 (212)
267 cd01965 Nitrogenase_MoFe_beta_ 29.8 4.3E+02 0.0094 24.0 9.3 109 58-177 60-187 (428)
268 COG1523 PulA Type II secretory 29.7 30 0.00066 33.9 1.6 78 109-204 205-283 (697)
269 cd07948 DRE_TIM_HCS Saccharomy 29.3 2.5E+02 0.0054 23.9 7.0 99 100-206 19-132 (262)
270 PF09639 YjcQ: YjcQ protein; 29.1 81 0.0018 22.0 3.3 24 136-159 25-48 (88)
271 PLN02681 proline dehydrogenase 29.1 4.8E+02 0.01 24.3 11.5 162 39-210 221-413 (455)
272 TIGR02402 trehalose_TreZ malto 29.1 78 0.0017 30.1 4.2 21 189-209 163-183 (542)
273 COG2874 FlaH Predicted ATPases 28.9 1.8E+02 0.0039 24.4 5.7 112 40-158 45-167 (235)
274 cd03770 SR_TndX_transposase Se 28.7 1.1E+02 0.0024 23.0 4.4 50 107-156 55-105 (140)
275 PF13552 DUF4127: Protein of u 28.7 5E+02 0.011 24.4 12.6 131 36-169 210-368 (497)
276 PF06792 UPF0261: Uncharacteri 28.6 1.6E+02 0.0034 27.0 5.8 57 108-170 199-269 (403)
277 TIGR01428 HAD_type_II 2-haloal 28.6 1.5E+02 0.0032 23.4 5.3 64 105-170 61-128 (198)
278 PRK00941 acetyl-CoA decarbonyl 28.5 3.1E+02 0.0068 27.4 8.2 73 136-214 251-340 (781)
279 PRK08133 O-succinylhomoserine 28.5 3.5E+02 0.0076 24.3 8.2 54 159-212 134-189 (390)
280 PRK07810 O-succinylhomoserine 28.4 3.4E+02 0.0074 24.5 8.2 55 159-213 143-199 (403)
281 COG2875 CobM Precorrin-4 methy 28.3 3.7E+02 0.008 22.8 9.3 104 100-208 59-168 (254)
282 PRK07811 cystathionine gamma-s 28.3 4.4E+02 0.0095 23.6 10.0 101 108-213 88-190 (388)
283 TIGR00321 dhys deoxyhypusine s 28.3 4.1E+02 0.0089 23.3 8.2 75 110-204 104-179 (301)
284 PF04430 DUF498: Protein of un 28.3 1.1E+02 0.0023 22.2 4.0 50 158-207 38-88 (110)
285 PF00809 Pterin_bind: Pterin b 28.2 3.2E+02 0.0069 22.2 7.3 90 115-208 30-125 (210)
286 cd08568 GDPD_TmGDE_like Glycer 28.2 2.6E+02 0.0057 22.8 6.8 21 37-57 13-33 (226)
287 PF03599 CdhD: CO dehydrogenas 27.7 3.4E+02 0.0073 24.7 7.7 83 120-209 69-154 (386)
288 COG0710 AroD 3-dehydroquinate 27.7 3.7E+02 0.008 22.6 14.7 86 36-124 12-99 (231)
289 PRK12570 N-acetylmuramic acid- 27.7 4.1E+02 0.0088 23.1 10.0 57 109-168 116-172 (296)
290 PRK09776 putative diguanylate 27.6 1.3E+02 0.0029 30.7 5.9 101 102-206 939-1051(1092)
291 KOG1549 Cysteine desulfurase N 27.1 5.1E+02 0.011 24.0 9.3 75 137-213 143-225 (428)
292 COG1902 NemA NADH:flavin oxido 27.1 4.7E+02 0.01 23.5 10.6 23 35-57 139-168 (363)
293 PF08671 SinI: Anti-repressor 27.0 75 0.0016 17.5 2.2 16 38-53 3-18 (30)
294 PRK11267 biopolymer transport 26.5 2E+02 0.0044 21.8 5.4 54 100-158 81-134 (141)
295 PRK05339 PEP synthetase regula 26.5 2.6E+02 0.0056 24.1 6.5 73 37-124 15-90 (269)
296 cd00668 Ile_Leu_Val_MetRS_core 26.5 1E+02 0.0022 26.7 4.2 49 102-153 81-131 (312)
297 PLN02951 Molybderin biosynthes 26.5 2.5E+02 0.0054 25.3 6.8 128 35-184 90-240 (373)
298 PRK08084 DNA replication initi 26.4 1.8E+02 0.0039 24.1 5.6 45 120-164 97-145 (235)
299 cd05560 Xcc1710_like Xcc1710_l 26.2 2.5E+02 0.0054 20.4 5.6 50 157-207 38-87 (109)
300 PF04476 DUF556: Protein of un 25.9 4E+02 0.0087 22.4 9.8 145 45-202 14-183 (235)
301 TIGR01660 narH nitrate reducta 25.9 30 0.00066 32.0 0.8 53 149-201 264-317 (492)
302 COG1167 ARO8 Transcriptional r 25.8 5.3E+02 0.012 23.8 13.3 144 36-208 105-269 (459)
303 cd05007 SIS_Etherase N-acetylm 25.7 4.1E+02 0.0089 22.4 10.1 56 110-168 108-163 (257)
304 PRK09613 thiH thiamine biosynt 25.5 5.6E+02 0.012 24.0 10.3 105 99-205 114-238 (469)
305 PRK13015 3-dehydroquinate dehy 25.1 3.3E+02 0.0071 21.1 7.1 80 99-185 25-106 (146)
306 PRK02301 putative deoxyhypusin 25.0 4.5E+02 0.0097 23.2 7.8 17 188-204 174-190 (316)
307 cd00739 DHPS DHPS subgroup of 24.9 4.3E+02 0.0093 22.4 9.4 115 41-160 86-209 (257)
308 cd00466 DHQase_II Dehydroquina 24.9 3.3E+02 0.007 21.0 6.8 80 99-185 23-104 (140)
309 PRK09485 mmuM homocysteine met 24.7 4.6E+02 0.01 22.7 17.5 165 36-205 44-246 (304)
310 PLN02880 tyrosine decarboxylas 24.6 3.5E+02 0.0076 25.3 7.6 25 189-213 259-283 (490)
311 COG1325 Predicted exosome subu 24.5 2.1E+02 0.0046 22.2 5.0 91 14-155 9-103 (149)
312 KOG3380 Actin-related protein 24.4 64 0.0014 25.0 2.2 47 108-154 90-142 (152)
313 cd05125 Mth938_2P1-like Mth938 24.3 2.7E+02 0.0058 20.5 5.5 49 159-207 40-89 (114)
314 PF09370 TIM-br_sig_trns: TIM- 24.3 1.1E+02 0.0023 26.4 3.7 53 101-160 64-116 (268)
315 cd01973 Nitrogenase_VFe_beta_l 24.2 5.8E+02 0.012 23.6 8.9 112 56-178 63-194 (454)
316 cd08583 PI-PLCc_GDPD_SF_unchar 24.1 4E+02 0.0088 21.8 10.1 21 37-57 14-34 (237)
317 PF13653 GDPD_2: Glycerophosph 24.0 72 0.0016 17.5 1.8 18 41-58 10-27 (30)
318 KOG0173 20S proteasome, regula 24.0 69 0.0015 27.1 2.5 37 16-52 158-200 (271)
319 cd08590 PI-PLCc_Rv2075c_like C 24.0 3E+02 0.0064 23.6 6.5 17 43-59 46-62 (267)
320 cd00945 Aldolase_Class_I Class 23.9 3.5E+02 0.0075 21.0 12.6 98 36-148 11-109 (201)
321 cd07937 DRE_TIM_PC_TC_5S Pyruv 23.9 4.6E+02 0.0099 22.3 15.8 24 36-59 19-42 (275)
322 PF01220 DHquinase_II: Dehydro 23.8 3.3E+02 0.0071 21.0 6.0 80 99-185 24-105 (140)
323 PRK07671 cystathionine beta-ly 23.7 4.9E+02 0.011 23.2 8.2 52 160-211 123-176 (377)
324 PF01890 CbiG_C: Cobalamin syn 23.6 2.6E+02 0.0057 20.6 5.4 63 99-168 11-73 (121)
325 PRK15108 biotin synthase; Prov 23.5 5.2E+02 0.011 22.9 12.1 105 35-153 76-188 (345)
326 PF01791 DeoC: DeoC/LacD famil 23.4 4.2E+02 0.0091 21.8 7.3 129 39-181 20-168 (236)
327 TIGR02717 AcCoA-syn-alpha acet 23.4 3.5E+02 0.0075 25.0 7.3 70 119-214 63-134 (447)
328 PRK14468 ribosomal RNA large s 23.4 5.3E+02 0.011 22.9 9.3 81 129-210 223-321 (343)
329 TIGR00381 cdhD CO dehydrogenas 23.3 5.7E+02 0.012 23.3 11.3 105 102-213 127-254 (389)
330 PRK11024 colicin uptake protei 23.3 2.3E+02 0.005 21.4 5.2 52 101-157 86-137 (141)
331 PF00875 DNA_photolyase: DNA p 23.2 2.6E+02 0.0057 21.4 5.7 30 178-207 96-125 (165)
332 PRK05441 murQ N-acetylmuramic 23.2 5E+02 0.011 22.5 9.3 58 108-168 119-176 (299)
333 PF10171 DUF2366: Uncharacteri 23.1 1.8E+02 0.0039 23.2 4.6 50 101-157 65-114 (173)
334 cd08620 PI-PLCXDc_like_1 Catal 23.1 4E+02 0.0088 23.0 7.2 19 43-61 35-53 (281)
335 cd07938 DRE_TIM_HMGL 3-hydroxy 23.0 3.6E+02 0.0078 23.0 6.9 96 104-204 20-132 (274)
336 PLN02444 HMP-P synthase 22.9 3.6E+02 0.0077 26.0 7.0 105 41-166 240-348 (642)
337 PLN02509 cystathionine beta-ly 22.9 4.2E+02 0.0091 24.7 7.7 56 159-214 205-262 (464)
338 PF00388 PI-PLC-X: Phosphatidy 22.7 69 0.0015 24.3 2.2 22 41-62 29-50 (146)
339 cd08556 GDPD Glycerophosphodie 22.6 3.6E+02 0.0078 20.7 10.5 134 37-207 12-168 (189)
340 PRK02714 O-succinylbenzoate sy 22.6 5.2E+02 0.011 22.5 15.3 85 121-211 192-277 (320)
341 PF00762 Ferrochelatase: Ferro 22.6 3E+02 0.0064 24.2 6.4 55 99-154 203-258 (316)
342 PRK06176 cystathionine gamma-s 22.6 4.8E+02 0.011 23.3 7.9 53 160-212 123-177 (380)
343 PRK10200 putative racemase; Pr 22.6 4.5E+02 0.0097 21.8 7.9 63 101-164 15-89 (230)
344 COG3737 Uncharacterized conser 22.5 2.1E+02 0.0046 21.4 4.5 48 160-207 56-104 (127)
345 cd00405 PRAI Phosphoribosylant 22.5 2.7E+02 0.0058 22.3 5.8 66 114-181 16-82 (203)
346 cd01989 STK_N The N-terminal d 22.5 3.2E+02 0.0069 20.0 6.9 28 187-214 91-118 (146)
347 PRK03995 hypothetical protein; 22.5 4.7E+02 0.01 22.5 7.3 64 44-119 197-263 (267)
348 cd07948 DRE_TIM_HCS Saccharomy 22.4 4.8E+02 0.01 22.1 11.8 24 36-59 20-43 (262)
349 PF00148 Oxidored_nitro: Nitro 22.4 5.6E+02 0.012 22.8 10.3 132 66-208 58-226 (398)
350 PRK12558 glutamyl-tRNA synthet 22.4 2E+02 0.0043 26.7 5.4 59 101-167 49-107 (445)
351 PRK15456 universal stress prot 22.4 1.6E+02 0.0034 21.8 4.1 35 177-211 83-117 (142)
352 PRK04820 rnpA ribonuclease P; 22.3 2.7E+02 0.0058 21.5 5.4 31 81-118 87-117 (145)
353 PRK13753 dihydropteroate synth 22.1 5.2E+02 0.011 22.3 9.1 102 100-209 22-129 (279)
354 PRK07027 cobalamin biosynthesi 22.1 2.2E+02 0.0047 21.3 4.7 62 99-167 13-74 (126)
355 PRK08861 cystathionine gamma-s 22.0 5.9E+02 0.013 22.9 11.3 91 120-214 91-183 (388)
356 PRK08045 cystathionine gamma-s 21.9 5.6E+02 0.012 23.0 8.2 88 122-213 92-181 (386)
357 cd01967 Nitrogenase_MoFe_alpha 21.8 5.8E+02 0.013 22.8 11.4 105 58-176 66-190 (406)
358 cd00338 Ser_Recombinase Serine 21.6 1.9E+02 0.0041 21.1 4.4 50 107-157 52-102 (137)
359 cd08570 GDPD_YPL206cp_fungi Gl 21.6 4.5E+02 0.0098 21.5 9.7 22 37-58 12-33 (234)
360 PRK12581 oxaloacetate decarbox 21.6 1.3E+02 0.0028 28.1 4.0 8 51-58 12-19 (468)
361 cd01916 ACS_1 Acetyl-CoA synth 21.5 4.4E+02 0.0096 26.2 7.8 82 124-210 203-299 (731)
362 cd01320 ADA Adenosine deaminas 21.5 5.3E+02 0.011 22.2 14.0 103 101-208 139-242 (325)
363 COG1149 MinD superfamily P-loo 21.5 2.1E+02 0.0045 24.8 4.9 37 171-211 215-251 (284)
364 TIGR01325 O_suc_HS_sulf O-succ 21.4 5.1E+02 0.011 23.1 7.8 52 160-211 128-181 (380)
365 PRK14478 nitrogenase molybdenu 21.3 6.7E+02 0.015 23.3 10.2 107 56-176 96-221 (475)
366 cd01948 EAL EAL domain. This d 21.3 4.3E+02 0.0093 21.1 9.7 117 80-206 82-209 (240)
367 PRK05939 hypothetical protein; 21.2 5E+02 0.011 23.4 7.8 67 145-213 106-175 (397)
368 cd05006 SIS_GmhA Phosphoheptos 21.2 1.2E+02 0.0027 23.7 3.5 47 119-168 100-146 (177)
369 KOG0693 Myo-inositol-1-phospha 21.2 3.9E+02 0.0085 24.2 6.6 30 102-131 206-235 (512)
370 KOG1405 4-aminobutyrate aminot 21.1 3.5E+02 0.0077 24.6 6.3 28 189-217 295-322 (484)
371 cd00814 MetRS_core catalytic c 21.0 1.5E+02 0.0033 25.8 4.3 47 102-151 68-114 (319)
372 PRK08574 cystathionine gamma-s 20.9 3.7E+02 0.008 24.1 6.8 55 160-214 125-182 (385)
373 COG0646 MetH Methionine syntha 20.9 4.9E+02 0.011 22.9 7.1 36 134-169 271-307 (311)
374 PRK13011 formyltetrahydrofolat 20.7 5.5E+02 0.012 22.1 13.9 141 39-206 20-172 (286)
375 cd02742 GH20_hexosaminidase Be 20.7 1.4E+02 0.003 25.9 3.9 16 189-204 75-90 (303)
376 KOG1321 Protoheme ferro-lyase 20.7 5.9E+02 0.013 22.7 7.5 89 78-168 224-318 (395)
377 PRK10508 hypothetical protein; 20.6 2.5E+02 0.0055 24.8 5.6 42 100-146 286-327 (333)
378 TIGR01108 oadA oxaloacetate de 20.6 94 0.002 29.9 3.0 100 106-205 23-137 (582)
379 COG0646 MetH Methionine syntha 20.5 5.9E+02 0.013 22.4 10.5 111 37-147 52-183 (311)
380 cd03324 rTSbeta_L-fuconate_deh 20.3 6.7E+02 0.014 22.9 14.9 150 36-206 196-352 (415)
381 COG1066 Sms Predicted ATP-depe 20.2 1.8E+02 0.0038 26.9 4.5 44 173-217 174-228 (456)
382 PF09391 DUF2000: Protein of u 20.2 2.4E+02 0.0051 21.4 4.6 47 36-82 62-108 (133)
383 PF10087 DUF2325: Uncharacteri 20.2 3E+02 0.0065 19.1 5.0 41 164-206 42-82 (97)
384 PRK14865 rnpA ribonuclease P; 20.1 2.7E+02 0.0059 20.3 4.8 33 81-120 83-115 (116)
385 PRK06084 O-acetylhomoserine am 20.1 4.9E+02 0.011 23.8 7.5 54 159-212 131-186 (425)
386 PRK13523 NADPH dehydrogenase N 20.0 6.1E+02 0.013 22.4 12.0 40 138-177 263-303 (337)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=9e-55 Score=379.52 Aligned_cols=215 Identities=44% Similarity=0.691 Sum_probs=196.0
Q ss_pred CceeecCCCCcccCceeecccccCCCCCCCCChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCC-CCCEE
Q 025575 5 VKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGM-RERVE 83 (250)
Q Consensus 5 m~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~-R~~~~ 83 (250)
|++|+||++|++||+||||||.+|+.+ ...+.+++.++|++|+++|||+||||+.||.|.||+++|++|++.. |++++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~-~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDT-DDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCC-CchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 789999999999999999999998642 2224556778999999999999999999999999999999999865 89999
Q ss_pred EEeeeCcccCC-C-C-CCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCccc
Q 025575 84 LATKFGISFAD-G-G-KIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEAC 160 (250)
Q Consensus 84 i~tK~~~~~~~-~-~-~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 160 (250)
|+||++..+.+ . . ..+.++++|+++++.||+||||||||||++||||+..+.++++++|.+|+++|+||+||+||++
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 99999876542 2 1 2567999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc-CCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEeccCccCcCCCCCCCCC
Q 025575 161 AATIRRAHAV-HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVE 221 (250)
Q Consensus 161 ~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~L~~g~~~~~ 221 (250)
.+++.++++. .+++++|.+||++++..+.+++++|+++||++++||||++|+|+ ||+.+.
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Lt-gk~~~~ 220 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLT-GKYLPG 220 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccC-CCcCCC
Confidence 9999999999 59999999999999877777999999999999999999999999 996654
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=1.1e-52 Score=361.15 Aligned_cols=224 Identities=45% Similarity=0.712 Sum_probs=202.0
Q ss_pred CceeecCCCCcccCceeecccccCCCCCCCCChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCC--CCCCE
Q 025575 5 VKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGG--MRERV 82 (250)
Q Consensus 5 m~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~--~R~~~ 82 (250)
|+++++|++|++||++|||+|.+.. |+...+++++.++|.+|+++|+|+||||++||+|.||.++|++|++. +|+++
T Consensus 12 ~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~~v 90 (336)
T KOG1575|consen 12 MLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRDKV 90 (336)
T ss_pred ceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCCcE
Confidence 8899999999999999999974433 44446889999999999999999999999999999999999999985 79999
Q ss_pred EEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHH
Q 025575 83 ELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAA 162 (250)
Q Consensus 83 ~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~ 162 (250)
+|+||++...........+..++.+.++.|+++|+++|||||++||+|+..|+++++++|.+++++|+|++||+|+++++
T Consensus 91 viaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe~sa~ 170 (336)
T KOG1575|consen 91 VIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSEWSAE 170 (336)
T ss_pred EEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEeccCCHH
Confidence 99999986642223457789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCC--ceEEeeecCcCCcCchh-hhHHHHHHhCCeEEEeccCccCcCCCCC-CCCCCCCCCcccc
Q 025575 163 TIRRAHAVHP--ITAVQLEWSLWSRDVEA-EIVPTCRELGIGIVAYGPLGQGFLSSGP-KLVESFSKYDFRK 230 (250)
Q Consensus 163 ~l~~~~~~~~--~~~~q~~~n~~~~~~~~-~~~~~~~~~gi~via~spl~~G~L~~g~-~~~~~~~~~~~~~ 230 (250)
++.++....+ +.++|++||++.|..++ ++++.|++.||++++||||++|+|| || ...++.+.++.+.
T Consensus 171 ~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Lt-gk~~~~e~~~~~~~~~ 241 (336)
T KOG1575|consen 171 EIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLT-GKYKLGEDSRNGDKRF 241 (336)
T ss_pred HHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceec-cCcccccccccccccc
Confidence 9999999866 99999999999998554 6999999999999999999999999 88 4456667776554
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=4.5e-51 Score=344.98 Aligned_cols=191 Identities=34% Similarity=0.484 Sum_probs=171.6
Q ss_pred CCceeecCCCCcccCceeecccccCCCCCCCCChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCC--CCCC
Q 025575 4 TVKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGG--MRER 81 (250)
Q Consensus 4 ~m~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~--~R~~ 81 (250)
++.+.++ ++|.+||.||||||+++. .+.+.+.+.+|++.|+|+||||..|| ||+.+|+++++. +|++
T Consensus 2 ~~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~Ree 70 (280)
T COG0656 2 MKTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREE 70 (280)
T ss_pred CCceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHH
Confidence 3556778 778889999999999852 23389999999999999999999999 999999999984 8999
Q ss_pred EEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC--CCHHHHHHHHHHHHHcCCcceEecCcc
Q 025575 82 VELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK--IPIEVTIGELKKLVEEGKIKYIGLSEA 159 (250)
Q Consensus 82 ~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~--~~~~~~~~~l~~l~~~G~ir~iGvSn~ 159 (250)
+||+||+|.. +..++.+.+++++||++||+||||||+||||.+. ..+.++|++||+++++|+||+||||||
T Consensus 71 lFittKvw~~-------~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF 143 (280)
T COG0656 71 LFITTKVWPS-------DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNF 143 (280)
T ss_pred eEEEeecCCc-------cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCC
Confidence 9999999986 5678999999999999999999999999999763 337899999999999999999999999
Q ss_pred cHHHHHHHhhc--CCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEeccCccCc-CC
Q 025575 160 CAATIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGF-LS 214 (250)
Q Consensus 160 ~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~-L~ 214 (250)
+.++|+++++. ..|.++|++|||+.++. +++++|+++||.++|||||+.|. +.
T Consensus 144 ~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g~~l~ 199 (280)
T COG0656 144 GVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKGGKLL 199 (280)
T ss_pred CHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCcccccccc
Confidence 99999999877 55899999999999974 59999999999999999999654 44
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=2.2e-49 Score=347.11 Aligned_cols=210 Identities=26% Similarity=0.413 Sum_probs=183.2
Q ss_pred eeecCCCCcccCceeecccccCCCCCCCCChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCC--CCCCEEE
Q 025575 7 RIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGG--MRERVEL 84 (250)
Q Consensus 7 ~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~--~R~~~~i 84 (250)
+|+||++|++||+||||||.+ ++...+.+++.++|+.|+++|||+||||+.||.|.||+++|++|+.. +|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 588999999999999999974 23334678899999999999999999999999999999999999853 6999999
Q ss_pred EeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHH
Q 025575 85 ATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATI 164 (250)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 164 (250)
+||++...........+++.+++++++||++||+||||+|++|||++..+++++|++|++|+++|+||+||||||+.+++
T Consensus 78 aTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~~l 157 (317)
T TIGR01293 78 TTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSMEI 157 (317)
T ss_pred EeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHH
Confidence 99985321101112457999999999999999999999999999998888999999999999999999999999999998
Q ss_pred HHHhhc------CCceEEeeecCcCCcCc-hhhhHHHHHHhCCeEEEeccCccCcCCCCCCCC
Q 025575 165 RRAHAV------HPITAVQLEWSLWSRDV-EAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLV 220 (250)
Q Consensus 165 ~~~~~~------~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~via~spl~~G~L~~g~~~~ 220 (250)
.++... .+++++|++||++.+.. +.+++++|+++||++++|+||++|+|+ |++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Lt-g~~~~ 219 (317)
T TIGR01293 158 MEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVS-GKYDS 219 (317)
T ss_pred HHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccC-CCCCC
Confidence 876432 46789999999999874 568999999999999999999999999 88544
No 5
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=2.8e-49 Score=350.18 Aligned_cols=213 Identities=30% Similarity=0.502 Sum_probs=184.8
Q ss_pred CCceeecCCCCcccCceeecccccCCCCCCCCChHHHHHHHHHHHHcCCCeEeCcCCcCC--CChHHHHHHHhcCC---C
Q 025575 4 TVKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGP--YTNEILVGKALKGG---M 78 (250)
Q Consensus 4 ~m~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g~sE~~lg~~l~~~---~ 78 (250)
.|++|+||++|++||+||||||+. +|...+.+++.++|+.|++.|||+||||+.||+ |.||+.+|++|++. .
T Consensus 12 ~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~ 88 (346)
T PRK09912 12 QMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAY 88 (346)
T ss_pred CcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccCC
Confidence 499999999999999999999973 233335677899999999999999999999995 89999999999863 5
Q ss_pred CCCEEEEeeeCcccCCC-CCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecC
Q 025575 79 RERVELATKFGISFADG-GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS 157 (250)
Q Consensus 79 R~~~~i~tK~~~~~~~~-~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS 157 (250)
|++++|+||++....++ .....+++.+++++++||++||+||||+|++|+|++..+++++|++|++|+++|+|++||||
T Consensus 89 Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iGvS 168 (346)
T PRK09912 89 RDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGIS 168 (346)
T ss_pred CCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEec
Confidence 99999999987421111 11245799999999999999999999999999999888999999999999999999999999
Q ss_pred cccHHHHHHHhhc-----CCceEEeeecCcCCcCch-hhhHHHHHHhCCeEEEeccCccCcCCCCCCCC
Q 025575 158 EACAATIRRAHAV-----HPITAVQLEWSLWSRDVE-AEIVPTCRELGIGIVAYGPLGQGFLSSGPKLV 220 (250)
Q Consensus 158 n~~~~~l~~~~~~-----~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~via~spl~~G~L~~g~~~~ 220 (250)
||++++++++.+. .++.++|++||++++..+ .++++.|+++||++++|+||++|+|+ +++.+
T Consensus 169 n~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt-~~~~~ 236 (346)
T PRK09912 169 SYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLT-GKYLN 236 (346)
T ss_pred CCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCcccc-CCCCC
Confidence 9999988876542 467899999999998654 47999999999999999999999999 87543
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=4.2e-48 Score=342.86 Aligned_cols=211 Identities=29% Similarity=0.411 Sum_probs=182.4
Q ss_pred CceeecCCCCcccCceeecccccCCCCCCCCChHHHHHHHHHHHHcCCCeEeCcCCcC-------CCChHHHHHHHhcCC
Q 025575 5 VKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYG-------PYTNEILVGKALKGG 77 (250)
Q Consensus 5 m~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-------~g~sE~~lg~~l~~~ 77 (250)
|++|+||++|++||+||||||++|. ..+.+++.++|+.|++.|||+||||+.|| .|.||..+|++|+..
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 7899999999999999999999863 23578899999999999999999999998 488999999999854
Q ss_pred -CCCCEEEEeeeCcccCC-C----CCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCC-----------------CCC
Q 025575 78 -MRERVELATKFGISFAD-G----GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT-----------------KIP 134 (250)
Q Consensus 78 -~R~~~~i~tK~~~~~~~-~----~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-----------------~~~ 134 (250)
.|++++|+||++..... + .....+++.+++++++||++||+||||||++|||++ ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 59999999998532110 0 012468999999999999999999999999999965 246
Q ss_pred HHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhc------CCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEeccC
Q 025575 135 IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV------HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPL 208 (250)
Q Consensus 135 ~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~------~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 208 (250)
+.++|++|++|+++|+|++||+|||+.+++++++.. ..+.++|++||++++..+.+++++|+++||++++|+||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 789999999999999999999999999988776532 35788999999999876668999999999999999999
Q ss_pred ccCcCCCCCCCC
Q 025575 209 GQGFLSSGPKLV 220 (250)
Q Consensus 209 ~~G~L~~g~~~~ 220 (250)
++|+|+ |++..
T Consensus 237 ~~G~Lt-g~~~~ 247 (346)
T PRK10625 237 AFGTLT-GKYLN 247 (346)
T ss_pred cCeecc-CCCCC
Confidence 999999 88543
No 7
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=2.6e-48 Score=328.44 Aligned_cols=191 Identities=29% Similarity=0.444 Sum_probs=173.5
Q ss_pred CCCCCceeecCCCCcccCceeecccccCCCCCCCCChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCC---
Q 025575 1 MAGTVKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGG--- 77 (250)
Q Consensus 1 m~~~m~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~--- 77 (250)
||... ..+| ++|.+||.||||||+. +..++.++++.|++.|+|+||||..|| +|+.+|.+|++.
T Consensus 1 M~~~~-~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~ 67 (300)
T KOG1577|consen 1 MSSKT-TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAE 67 (300)
T ss_pred CCccc-eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhh
Confidence 55544 7889 9999999999999984 567899999999999999999999999 899999999953
Q ss_pred ---CCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC----------------CCHHHH
Q 025575 78 ---MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK----------------IPIEVT 138 (250)
Q Consensus 78 ---~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~----------------~~~~~~ 138 (250)
+|+++||+||+|.. .+.++.++.++++||++||+||+|||++|||-.. .+..++
T Consensus 68 ~~v~RediFiTSKlw~~-------~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~t 140 (300)
T KOG1577|consen 68 GGVKREDIFITSKLWPT-------DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIET 140 (300)
T ss_pred CCcchhhheeeeccCcc-------ccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHH
Confidence 89999999999976 4689999999999999999999999999999553 346789
Q ss_pred HHHHHHHHHcCCcceEecCcccHHHHHHHhhc--CCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEeccCccCcC
Q 025575 139 IGELKKLVEEGKIKYIGLSEACAATIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFL 213 (250)
Q Consensus 139 ~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~L 213 (250)
|++||+++++|++|+||||||+..+|+++++. .+|.++|+++||+.++ .+++++|+++||.|.|||||+.+--
T Consensus 141 W~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q--~~L~~fCk~~~I~v~AYSpLg~~~~ 215 (300)
T KOG1577|consen 141 WKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQ--KKLVEFCKSKGIVVTAYSPLGSPGR 215 (300)
T ss_pred HHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcCh--HHHHHHHhhCCcEEEEecCCCCCCC
Confidence 99999999999999999999999999999887 7789999999999886 6899999999999999999996643
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=2.7e-47 Score=328.97 Aligned_cols=205 Identities=43% Similarity=0.657 Sum_probs=187.3
Q ss_pred eeecCCCCcccCceeecccccCCCCCCCCChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCC-CCCEEEE
Q 025575 7 RIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGM-RERVELA 85 (250)
Q Consensus 7 ~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~-R~~~~i~ 85 (250)
+|+||++|++||+||||+|.++..+ .+.+++.++++.|++.|||+||||+.||+|.+|+.+|++|+..+ |++++|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 5789999999999999999987544 36789999999999999999999999999999999999999875 9999999
Q ss_pred eeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCC-HHHHHHHHHHHHHcCCcceEecCcccHHHH
Q 025575 86 TKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP-IEVTIGELKKLVEEGKIKYIGLSEACAATI 164 (250)
Q Consensus 86 tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~-~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 164 (250)
||++...... ...+++.+++++++||++|+++|||+|+||+|+.... ..++|++|++++++|+||+||||||+++.+
T Consensus 78 tK~~~~~~~~--~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l 155 (285)
T cd06660 78 TKVGPRPGDG--RDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQL 155 (285)
T ss_pred eeecCCCCCC--CCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHHH
Confidence 9998653211 2468999999999999999999999999999988766 889999999999999999999999999999
Q ss_pred HHHhhc--CCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEeccCccCcCCCCC
Q 025575 165 RRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGP 217 (250)
Q Consensus 165 ~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~L~~g~ 217 (250)
.+++.. .+|+++|++||++++..+.+++++|+++||++++|+||++|.|+ ++
T Consensus 156 ~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~-~~ 209 (285)
T cd06660 156 EEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLT-GK 209 (285)
T ss_pred HHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceec-CC
Confidence 999888 89999999999999986557999999999999999999999999 65
No 9
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=3.7e-47 Score=332.70 Aligned_cols=206 Identities=31% Similarity=0.480 Sum_probs=177.4
Q ss_pred eeecCCCCcccCceeecccccCCCCCCCCChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCC--CCCCEEE
Q 025575 7 RIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGG--MRERVEL 84 (250)
Q Consensus 7 ~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~--~R~~~~i 84 (250)
||+||++|++||.||||||++|..|+. .+.+++.++|+.|++.|||+||||+.||+|.+|..+|++|++. +|++++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 688999999999999999999865553 3678899999999999999999999999999999999999874 6999999
Q ss_pred EeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC---CCHHHHHHHHHHHHHcCCcceEecCcccH
Q 025575 85 ATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK---IPIEVTIGELKKLVEEGKIKYIGLSEACA 161 (250)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~---~~~~~~~~~l~~l~~~G~ir~iGvSn~~~ 161 (250)
+||++... ++ ...+++.+++++++||++||+||||+|++|+|+.. .+++++|++|++|+++||||+||+|||++
T Consensus 80 ~TK~~~~~-~~--~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~ 156 (314)
T PLN02587 80 STKCGRYG-EG--FDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLPL 156 (314)
T ss_pred EeccccCC-CC--CCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCCH
Confidence 99997421 11 24689999999999999999999999999999643 34678999999999999999999999999
Q ss_pred HHHHHHhhc---C--CceEEeeecCcCCcCchhhhHHHHHHhCCeEEEeccCccCcCCCCCC
Q 025575 162 ATIRRAHAV---H--PITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPK 218 (250)
Q Consensus 162 ~~l~~~~~~---~--~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~L~~g~~ 218 (250)
++++.+... . .+..+|+.||+..+.. .+++++|+++||++++|+||++|+|+ ++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~-~~~ 216 (314)
T PLN02587 157 AIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLT-ENG 216 (314)
T ss_pred HHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccC-CCC
Confidence 988776653 2 2333578888877643 48999999999999999999999999 763
No 10
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.5e-45 Score=317.73 Aligned_cols=209 Identities=26% Similarity=0.407 Sum_probs=178.9
Q ss_pred CCCCCceeecCCCCcccCceeecccccCC--CCCCCCChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCC
Q 025575 1 MAGTVKRIKLGSQGLEVSAQGLGCMAMSC--LYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGM 78 (250)
Q Consensus 1 m~~~m~~~~lg~~g~~vs~lglG~~~~g~--~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~ 78 (250)
||..|...++.-+|++||+||||||++|. .||...+.+++.++|+.|++.|||+||||+.||+|.+|+.+|++++. .
T Consensus 1 ~~~~~~~~~~~l~g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~ 79 (290)
T PRK10376 1 MSTIMSSGTFTLGGRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-Y 79 (290)
T ss_pred CcccccCCceecCCeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-C
Confidence 66667655544459999999999999975 25554467889999999999999999999999999999999999975 6
Q ss_pred CCCEEEEeeeCcccCCC--CCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCC-----CCCHHHHHHHHHHHHHcCCc
Q 025575 79 RERVELATKFGISFADG--GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT-----KIPIEVTIGELKKLVEEGKI 151 (250)
Q Consensus 79 R~~~~i~tK~~~~~~~~--~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-----~~~~~~~~~~l~~l~~~G~i 151 (250)
|++++|+||++...... .....+++.+++++++||++|++||||+|++|+++. ..++.++|++|++|+++|||
T Consensus 80 R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gki 159 (290)
T PRK10376 80 PDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLV 159 (290)
T ss_pred CCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCce
Confidence 99999999986532111 123567999999999999999999999999887421 23578999999999999999
Q ss_pred ceEecCcccHHHHHHHhhcCCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEeccCccC
Q 025575 152 KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQG 211 (250)
Q Consensus 152 r~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G 211 (250)
|+||||||+.++++++.+..+++++|++||++.+.. .+++++|+++||++++|+||+++
T Consensus 160 r~iGvSn~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~ 218 (290)
T PRK10376 160 RHIGLSNVTPTQVAEARKIAEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGF 218 (290)
T ss_pred eEEEecCCCHHHHHHHHhhCCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCC
Confidence 999999999999999988888999999999999763 57999999999999999999744
No 11
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=2.7e-44 Score=307.77 Aligned_cols=179 Identities=26% Similarity=0.388 Sum_probs=162.3
Q ss_pred ccCceeecccccCCCCCCCCChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCC--CCCCEEEEeeeCcccC
Q 025575 16 EVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGG--MRERVELATKFGISFA 93 (250)
Q Consensus 16 ~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~--~R~~~~i~tK~~~~~~ 93 (250)
+||.||||||+++ .+++.++++.|++.|||+||||+.|| +|+.+|++|+.. +|+++||+||++..
T Consensus 2 ~vs~lglGt~~~~--------~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~-- 68 (267)
T PRK11172 2 SIPAFGLGTFRLK--------DQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID-- 68 (267)
T ss_pred CCCCEeeEccccC--------hHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC--
Confidence 6999999999873 46789999999999999999999999 799999999853 69999999998642
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC--CCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhc-
Q 025575 94 DGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK--IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV- 170 (250)
Q Consensus 94 ~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~--~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~- 170 (250)
..+++.+++++++||++||+||||+|++|||++. .+..++|++|++++++||||+||||||+.++++++++.
T Consensus 69 -----~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~ 143 (267)
T PRK11172 69 -----NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAV 143 (267)
T ss_pred -----CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhc
Confidence 4578999999999999999999999999999764 56789999999999999999999999999999988764
Q ss_pred --CCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEeccCccCcCC
Q 025575 171 --HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLS 214 (250)
Q Consensus 171 --~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~L~ 214 (250)
.+++++|++||++.+. .+++++|+++||+|++|+||++|.+.
T Consensus 144 ~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~ 187 (267)
T PRK11172 144 GAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVL 187 (267)
T ss_pred CCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCccc
Confidence 3689999999999875 58999999999999999999999776
No 12
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1.8e-44 Score=311.02 Aligned_cols=195 Identities=32% Similarity=0.490 Sum_probs=169.4
Q ss_pred ceeecccccCCCCCCCCChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcC--CCCCCEEEEeeeCcccCCCC
Q 025575 19 AQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GMRERVELATKFGISFADGG 96 (250)
Q Consensus 19 ~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~--~~R~~~~i~tK~~~~~~~~~ 96 (250)
+||||||++++. ..+.+++.++|+.|++.|||+||||+.||+|.+|+.+|++|++ .+|++++|+||+... ...
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~--~~~ 75 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGD--GKP 75 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESS--SST
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccccccccccccccccccc--ccc
Confidence 589999999753 4588999999999999999999999999888999999999998 599999999999111 112
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCC-HHHHHHHHHHHHHcCCcceEecCcccHHHHHHH--hhcCCc
Q 025575 97 KIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP-IEVTIGELKKLVEEGKIKYIGLSEACAATIRRA--HAVHPI 173 (250)
Q Consensus 97 ~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~-~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~--~~~~~~ 173 (250)
....+++.+++++++||++||+||||+|++|+|+...+ ..++|++|++|+++|+||+||||||+++.++++ ....+|
T Consensus 76 ~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~ 155 (283)
T PF00248_consen 76 EPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIPP 155 (283)
T ss_dssp GGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-E
T ss_pred cccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccccccc
Confidence 24779999999999999999999999999999999988 899999999999999999999999999999999 445789
Q ss_pred eEEeeecCcCCcCchhhhHHHHHHhCCeEEEeccCccCcCCCCCCC
Q 025575 174 TAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKL 219 (250)
Q Consensus 174 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~L~~g~~~ 219 (250)
+++|++||++.+....+++++|+++||++++|+||++|+|+ ++..
T Consensus 156 ~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~-~~~~ 200 (283)
T PF00248_consen 156 DVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLT-GKYK 200 (283)
T ss_dssp SEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGG-TTTT
T ss_pred cccccccccccccccccccccccccccccccccccccCccc-cccc
Confidence 99999999997666689999999999999999999999999 7743
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=2.9e-44 Score=310.94 Aligned_cols=189 Identities=22% Similarity=0.286 Sum_probs=166.8
Q ss_pred CcccCceeecccccCCC-------CCCCCChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEe
Q 025575 14 GLEVSAQGLGCMAMSCL-------YGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELAT 86 (250)
Q Consensus 14 g~~vs~lglG~~~~g~~-------~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~t 86 (250)
+++||+||||||++|.. |+. .+.+++.++|+.|++.|||+||||+.||. ||..+|++|+...+++++|+|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG~--SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGR-TPEAEARDILNIAARAGLSVLDASGLFGR--AETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCC-CCHHHHHHHHHHHHHcCCCEEecchhhhh--HHHHHhhhhccCCceEeeccc
Confidence 57899999999999853 333 47889999999999999999999999985 999999999863346788888
Q ss_pred eeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC-CCH-HHHHHHHHHHHHcCCcceEecCcccHHHH
Q 025575 87 KFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPI-EVTIGELKKLVEEGKIKYIGLSEACAATI 164 (250)
Q Consensus 87 K~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~-~~~-~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 164 (250)
|.. ..+++.+++++++||++||+||||+|++|+|++. .+. +++|++|++|+++||||+||||||+++++
T Consensus 79 k~~---------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~ 149 (292)
T PRK14863 79 VRA---------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDDP 149 (292)
T ss_pred ccc---------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHHH
Confidence 842 2368999999999999999999999999999763 333 57899999999999999999999999999
Q ss_pred HHHhhcCCceEEeeecCcCCcCch-hhhHHHHHHhCCeEEEeccCccCcCC
Q 025575 165 RRAHAVHPITAVQLEWSLWSRDVE-AEIVPTCRELGIGIVAYGPLGQGFLS 214 (250)
Q Consensus 165 ~~~~~~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~via~spl~~G~L~ 214 (250)
.++....+|+++|++||++++..+ .+++++|+++||++++|+||++|+|+
T Consensus 150 ~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~ 200 (292)
T PRK14863 150 VGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLF 200 (292)
T ss_pred HHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCcccc
Confidence 888777889999999999998654 46999999999999999999999998
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=4.8e-44 Score=291.42 Aligned_cols=209 Identities=30% Similarity=0.465 Sum_probs=188.0
Q ss_pred CceeecCCCCcccCceeecccccCCCCCCCCChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCC--CCCCE
Q 025575 5 VKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGG--MRERV 82 (250)
Q Consensus 5 m~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~--~R~~~ 82 (250)
|++.++++.|+++|++.+|+|++.. |+ .+..+....++.|++.||++||-|+.||+|..|+++|.+|+-. .|+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~--~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WN--MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-cc--CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 7889999999999999999999964 33 2457899999999999999999999999999999999999876 79999
Q ss_pred EEEeeeCcccCCC-----CCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecC
Q 025575 83 ELATKFGISFADG-----GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS 157 (250)
Q Consensus 83 ~i~tK~~~~~~~~-----~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS 157 (250)
.|.||++...+.. ..++.+.++|.+++++||++|++||+|+++||+||+-.+.+|+.+++..|+++||||++|||
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVS 157 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVS 157 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecC
Confidence 9999998754322 45788999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHhhc--CCceEEeeecCcCCcCc-hhhhHHHHHHhCCeEEEeccCccCcCCCC
Q 025575 158 EACAATIRRAHAV--HPITAVQLEWSLWSRDV-EAEIVPTCRELGIGIVAYGPLGQGFLSSG 216 (250)
Q Consensus 158 n~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~via~spl~~G~L~~g 216 (250)
||++.+++-+... .++.+||+++|+++... .++.++.|+++.|.++|||||++|.+.+|
T Consensus 158 Nf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g 219 (298)
T COG4989 158 NFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLG 219 (298)
T ss_pred CCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccC
Confidence 9999999877665 45789999999998753 36899999999999999999998877634
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=2.8e-42 Score=296.45 Aligned_cols=183 Identities=31% Similarity=0.362 Sum_probs=164.4
Q ss_pred eeecCCCCcccCceeecccccCCCCCCCCChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCC--CCCCEEE
Q 025575 7 RIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGG--MRERVEL 84 (250)
Q Consensus 7 ~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~--~R~~~~i 84 (250)
+..| ++|+.||.||||||++ +.+++.+++++|++.|||+||||+.|| +|+.+|++|+.. +|++++|
T Consensus 6 ~~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~~~i 73 (275)
T PRK11565 6 VIKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVAREELFI 73 (275)
T ss_pred eEEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCCHHHEEE
Confidence 4667 8999999999999986 457899999999999999999999998 799999999864 5899999
Q ss_pred EeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCC-CHHHHHHHHHHHHHcCCcceEecCcccHHH
Q 025575 85 ATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKIKYIGLSEACAAT 163 (250)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~-~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~ 163 (250)
+||++.. +++.+++++++||++|++||||+|++|+|++.. +..++|++|++|+++|+||+||||||++++
T Consensus 74 ~tK~~~~---------~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~ 144 (275)
T PRK11565 74 TTKLWND---------DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHH 144 (275)
T ss_pred EEEecCc---------chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHHH
Confidence 9998632 578999999999999999999999999998754 467999999999999999999999999999
Q ss_pred HHHHhhc--CCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEeccCccCc
Q 025575 164 IRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGF 212 (250)
Q Consensus 164 l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~ 212 (250)
+++++.. .++.++|++||++.+. .+++++|+++||.+++|+||++|.
T Consensus 145 l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~ 193 (275)
T PRK11565 145 LQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGG 193 (275)
T ss_pred HHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCC
Confidence 9988754 3578999999999874 579999999999999999999773
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=4.8e-41 Score=287.60 Aligned_cols=230 Identities=28% Similarity=0.289 Sum_probs=195.0
Q ss_pred CceeecCCCCcccCceeecccccCCCCCCCCChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEE
Q 025575 5 VKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVEL 84 (250)
Q Consensus 5 m~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i 84 (250)
|.||++|+||.++|.+|||+|++-..++...+.+.+.+++++|++.|||+||||..|..|.||..+|++|++..|+++.+
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 78999999999999999999998765556668889999999999999999999999977889999999999999999999
Q ss_pred EeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHH-----HHHHHHHHHHHcCCcceEecCcc
Q 025575 85 ATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIE-----VTIGELKKLVEEGKIKYIGLSEA 159 (250)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~-----~~~~~l~~l~~~G~ir~iGvSn~ 159 (250)
+||+.... --+++.+++-++++|++|++||+|+|+||..+. ..++ ..++.+++++++|+||++|+|.|
T Consensus 81 aTKlp~~~------~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFSfH 153 (391)
T COG1453 81 ATKLPSWP------VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFSFH 153 (391)
T ss_pred EeecCCcc------ccCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeecCC
Confidence 99997532 457999999999999999999999999999876 3332 35899999999999999999999
Q ss_pred -cHHHHHHHhhcCCceEEeeecCcCCcCch--hhhHHHHHHhCCeEEEeccCccCcCCCCCCCCCCCCCCccccccccCC
Q 025575 160 -CAATIRRAHAVHPITAVQLEWSLWSRDVE--AEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKVFCWNL 236 (250)
Q Consensus 160 -~~~~l~~~~~~~~~~~~q~~~n~~~~~~~--~~~~~~~~~~gi~via~spl~~G~L~~g~~~~~~~~~~~~~~~~~~~~ 236 (250)
+.+.+.+++...+++++|++||.++.... .+.++.|.++|++|+.++|+.+|-|+ . ..+.-...-++. ..+
T Consensus 154 gs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~-~--~vP~~~~~l~~~---~~~ 227 (391)
T COG1453 154 GSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLL-Y--NVPEKLEELCRP---ASP 227 (391)
T ss_pred CCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcc-c--CCCHHHHHHHHh---cCC
Confidence 56788999999999999999999987643 38999999999999999999999998 2 121111222444 444
Q ss_pred CCCCCCccccc
Q 025575 237 SFSSRSKDRCY 247 (250)
Q Consensus 237 ~~~~~~~~~~~ 247 (250)
..++..|+-||
T Consensus 228 ~~sP~~wa~R~ 238 (391)
T COG1453 228 KRSPAEWALRY 238 (391)
T ss_pred CCCcHHHHHHH
Confidence 55666666554
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.2e-40 Score=273.53 Aligned_cols=212 Identities=29% Similarity=0.406 Sum_probs=183.4
Q ss_pred CCceeecCCCCcccCceeecccccCCCCCCCCChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCCCCCEE
Q 025575 4 TVKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVE 83 (250)
Q Consensus 4 ~m~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~ 83 (250)
+|++|.+|++|++||+||||+..++..|+.. +.++....+..|+++|||+|||++.||++++|..+|.++++.||+..|
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd~-~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aYy 99 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGDE-DEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAYY 99 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCCc-chhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhhee
Confidence 4999999999999999999999999888873 667777767779999999999999999999999999999999999999
Q ss_pred EEeeeCcccCCC-CCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC----CCHHHHHHHHHHHHHcCCcceEecCc
Q 025575 84 LATKFGISFADG-GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK----IPIEVTIGELKKLVEEGKIKYIGLSE 158 (250)
Q Consensus 84 i~tK~~~~~~~~-~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~----~~~~~~~~~l~~l~~~G~ir~iGvSn 158 (250)
|+||++....+. ..++++++.+++++++||+||++||+|++++|..+.. ..+.|++.+|++++++||||+||++.
T Consensus 100 IaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGitg 179 (342)
T KOG1576|consen 100 IATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGITG 179 (342)
T ss_pred eeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeecc
Confidence 999998643222 3368899999999999999999999999999987543 34679999999999999999999999
Q ss_pred ccHHHHHHHhhc--CCceEEe--eecCcCCcCchhhhHHHHHHhCCeEEEeccCccCcCCCCCC
Q 025575 159 ACAATIRRAHAV--HPITAVQ--LEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPK 218 (250)
Q Consensus 159 ~~~~~l~~~~~~--~~~~~~q--~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~L~~g~~ 218 (250)
++.+.+.+.++. +.++++- ..|++.+.. .-..+++.+.+|++|+.-++++.|+|+ .+.
T Consensus 180 ypldvl~~~ae~~~G~~dvvlsY~ry~l~d~t-Ll~~~~~~~sk~vgVi~AsalsmgLLt-~~g 241 (342)
T KOG1576|consen 180 YPLDVLTECAERGKGRLDVVLSYCRYTLNDNT-LLRYLKRLKSKGVGVINASALSMGLLT-NQG 241 (342)
T ss_pred cchHHHHHHHhcCCCceeeehhhhhhccccHH-HHHHHHHHHhcCceEEehhhHHHHHhh-cCC
Confidence 999999998876 4466665 466665543 237888889999999999999999999 663
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.25 E-value=2.7e-06 Score=70.05 Aligned_cols=71 Identities=18% Similarity=0.170 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhc--CCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEec
Q 025575 135 IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYG 206 (250)
Q Consensus 135 ~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~s 206 (250)
+.++|..||+++.+|+|..||||.|++.+|+++++. ..|.++|+...-.+.-+ .++.+||.+|+|.+...+
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecC
Confidence 346899999999999999999999999999999887 67889999988888765 599999999999999766
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=93.88 E-value=2.9 Score=36.50 Aligned_cols=155 Identities=14% Similarity=0.061 Sum_probs=95.5
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcCCC-ChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYGPY-TNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g-~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~ 114 (250)
+.++..+.++.+++.|++.|..-- |.. ..+...=+++++.-. ++-|.-+... .++.+... .+-+.|+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v~~lr~~~g-~~~l~vD~n~--------~~~~~~A~-~~~~~l~ 201 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERIRAIREAAP-DARLRVDANQ--------GWTPEEAV-ELLRELA 201 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHHHHHHHhCC-CCeEEEeCCC--------CcCHHHHH-HHHHHHH
Confidence 456677888888999999998643 211 112222234443222 5666666543 23444332 2333444
Q ss_pred HcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcccHHHHHHHhhcCCceEEeeecCcCCc-CchhhhH
Q 025575 115 RLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIV 192 (250)
Q Consensus 115 ~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~ 192 (250)
.+ ++.++..|-+. +-++.+.+|++...|. ..|=+-++.+.+.++++....+++|+..+..-. ....++.
T Consensus 202 ~~-----~l~~iEeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~ 272 (316)
T cd03319 202 EL-----GVELIEQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIA 272 (316)
T ss_pred hc-----CCCEEECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHH
Confidence 44 44555555432 2366777888887776 335556788999999988888999997665422 1125899
Q ss_pred HHHHHhCCeEEEeccCccC
Q 025575 193 PTCRELGIGIVAYGPLGQG 211 (250)
Q Consensus 193 ~~~~~~gi~via~spl~~G 211 (250)
..|+++|+.++..+-+..+
T Consensus 273 ~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 273 DLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHcCCCEEEECchhhH
Confidence 9999999999986554433
No 20
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=92.44 E-value=1 Score=41.26 Aligned_cols=109 Identities=21% Similarity=0.210 Sum_probs=74.2
Q ss_pred cCceeecccccCCC----CCCCCChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCccc
Q 025575 17 VSAQGLGCMAMSCL----YGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISF 92 (250)
Q Consensus 17 vs~lglG~~~~g~~----~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~~ 92 (250)
|-++.+|..+|... -+...+.+++.+++..+.+.|+.-+..--.||-
T Consensus 148 vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIygl----------------------------- 198 (416)
T COG0635 148 VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGL----------------------------- 198 (416)
T ss_pred CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-----------------------------
Confidence 44888888887532 233346677888888888888887777777772
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEe-ecCCCC----------CCH----HHHHHH-HHHHHHcCCcceEec
Q 025575 93 ADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQ-HRVDTK----------IPI----EVTIGE-LKKLVEEGKIKYIGL 156 (250)
Q Consensus 93 ~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~l-h~p~~~----------~~~----~~~~~~-l~~l~~~G~ir~iGv 156 (250)
+.-+.+.+.+.+++.++ |+.|+|.+|.+ |-|... .|. .+.++. .+.|.+.|. +.||+
T Consensus 199 -----P~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yei 271 (416)
T COG0635 199 -----PGQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEI 271 (416)
T ss_pred -----CCCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEee
Confidence 24477888888888776 88999999976 444211 111 134443 445556676 99999
Q ss_pred CcccH
Q 025575 157 SEACA 161 (250)
Q Consensus 157 Sn~~~ 161 (250)
|||..
T Consensus 272 snfa~ 276 (416)
T COG0635 272 SNFAK 276 (416)
T ss_pred chhcC
Confidence 99976
No 21
>PRK07945 hypothetical protein; Provisional
Probab=89.61 E-value=12 Score=33.10 Aligned_cols=151 Identities=14% Similarity=0.058 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHcCCCeEeCcCCcCC-----CChHHHHHHHhcCC------CCC-CEEEEeeeCcccCCCCCCCCCHHH
Q 025575 37 EPDMIALIHHAINSGITLLDTSDIYGP-----YTNEILVGKALKGG------MRE-RVELATKFGISFADGGKIRGDPAY 104 (250)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-----g~sE~~lg~~l~~~------~R~-~~~i~tK~~~~~~~~~~~~~~~~~ 104 (250)
.....++++.|++.|+..+=.+++... +.+..-+-..+... .++ +|.+..-+.... +...+.
T Consensus 110 ~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~Il~GiE~d~~~------~g~~~~ 183 (335)
T PRK07945 110 GSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRILTGIEVDILD------DGSLDQ 183 (335)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEeEecccC------CCCcch
Confidence 445789999999999998776666321 22222232222221 122 223322222211 111222
Q ss_pred HHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCc---------------ccHHHHHHHh-
Q 025575 105 VRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE---------------ACAATIRRAH- 168 (250)
Q Consensus 105 i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn---------------~~~~~l~~~~- 168 (250)
.++.|+. .||+ +.-+|+... .+..+..+.|.++.+.+.+.-||=-. +..+.+.+++
T Consensus 184 ----~~~~l~~--~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~ 255 (335)
T PRK07945 184 ----EPELLDR--LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACR 255 (335)
T ss_pred ----hHHHHHh--CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHH
Confidence 2333443 3555 667787643 33456668888888888888777321 1222333322
Q ss_pred hcCCceEEeeecCcCCcCchhhhHHHHHHhCCeEE
Q 025575 169 AVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIV 203 (250)
Q Consensus 169 ~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi 203 (250)
+... .+.++-+.+...+...+++.|++.|+.++
T Consensus 256 e~g~--~lEINt~~~r~~P~~~il~~a~e~G~~vt 288 (335)
T PRK07945 256 EHGT--AVEINSRPERRDPPTRLLRLALDAGCLFS 288 (335)
T ss_pred HhCC--EEEEeCCCCCCCChHHHHHHHHHcCCeEE
Confidence 2222 22222233333334589999999998864
No 22
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=89.49 E-value=15 Score=32.64 Aligned_cols=154 Identities=13% Similarity=0.109 Sum_probs=91.6
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcCCC-----ChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYGPY-----TNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCE 110 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g-----~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~ 110 (250)
+.++..+.++.+.+.|++.|-.--..+.. .-....=+++++.-.+++.|...... .++.+...
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~--------~~~~~~a~---- 206 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANG--------RWDLAEAI---- 206 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCC--------CCCHHHHH----
Confidence 35667777888889999988753221110 01122223444432345555555432 34554443
Q ss_pred HHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcccHHHHHHHhhcCCceEEeeecCcCCc-Cch
Q 025575 111 ASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVE 188 (250)
Q Consensus 111 ~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~ 188 (250)
+.+++|. ..++.+++.|-+. +.++.+.++++.-.+. ..|=|-++++.+.++++....+++|+...-.-. ..-
T Consensus 207 ~~~~~l~--~~~i~~iEqP~~~----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~ 280 (357)
T cd03316 207 RLARALE--EYDLFWFEEPVPP----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEA 280 (357)
T ss_pred HHHHHhC--ccCCCeEcCCCCc----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHHH
Confidence 3333342 2355566766432 2466777888876665 344455788999999988888899887665432 112
Q ss_pred hhhHHHHHHhCCeEEEecc
Q 025575 189 AEIVPTCRELGIGIVAYGP 207 (250)
Q Consensus 189 ~~~~~~~~~~gi~via~sp 207 (250)
.++...|+++|+.++..+-
T Consensus 281 ~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 281 KKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHcCCeEeccCC
Confidence 5899999999999886553
No 23
>PRK08609 hypothetical protein; Provisional
Probab=88.51 E-value=7.7 Score=37.06 Aligned_cols=149 Identities=13% Similarity=0.109 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHcCCCeEeCcCCcC-----CCChHHHHHHHhcC---C----CCCCEEEEeeeCcccCCCCCCCCCHHHHH
Q 025575 39 DMIALIHHAINSGITLLDTSDIYG-----PYTNEILVGKALKG---G----MRERVELATKFGISFADGGKIRGDPAYVR 106 (250)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~DtA~~Yg-----~g~sE~~lg~~l~~---~----~R~~~~i~tK~~~~~~~~~~~~~~~~~i~ 106 (250)
...++++.|.+.|+..+=.+++.. .|.+...+-..++. . ..=+|++..-+... ++...
T Consensus 350 sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~----------~~g~~ 419 (570)
T PRK08609 350 SIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDIL----------PDGSL 419 (570)
T ss_pred CHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeec----------CCcch
Confidence 367799999999999998888762 22233333333221 1 11133444433322 11112
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCc---------c--cHHHHHHH-hhcCCce
Q 025575 107 ACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE---------A--CAATIRRA-HAVHPIT 174 (250)
Q Consensus 107 ~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn---------~--~~~~l~~~-~~~~~~~ 174 (250)
.-.+..|+. .||+ +.-+|++. ..+.+++++.+.++.+.|.+.-||=-. + ..+.+.++ .+.+ .
T Consensus 420 d~~~~~L~~--~D~v-I~SvH~~~-~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G--~ 493 (570)
T PRK08609 420 DYDDEVLAE--LDYV-IAAIHSSF-SQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN--T 493 (570)
T ss_pred hhcHHHHHh--hCEE-EEEeecCC-CCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC--C
Confidence 223334554 3565 66778753 345667888999999999887765332 1 11233333 2223 3
Q ss_pred EEeeecCcCCcCchhhhHHHHHHhCCeEE
Q 025575 175 AVQLEWSLWSRDVEAEIVPTCRELGIGIV 203 (250)
Q Consensus 175 ~~q~~~n~~~~~~~~~~~~~~~~~gi~vi 203 (250)
++|+.-+++.......++..|.+.|+.++
T Consensus 494 ~lEINa~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 494 ALELNANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred EEEEcCCccccCccHHHHHHHHHcCCEEE
Confidence 45565555543334689999999999754
No 24
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=85.96 E-value=4.8 Score=36.43 Aligned_cols=82 Identities=12% Similarity=0.145 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHc
Q 025575 37 EPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRL 116 (250)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L 116 (250)
......++++|++.|++++|||...- ....+.... .+..+.+..-.+.. +..+--.....+++--+
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDts~~~~---~~~~~~~~a---~~Agit~v~~~G~d------PGi~nv~a~~a~~~~~~-- 143 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDTSYYEE---PPWKLDEEA---KKAGITAVLGCGFD------PGITNVLAAYAAKELFD-- 143 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEcccCCc---hhhhhhHHH---HHcCeEEEcccCcC------cchHHHHHHHHHHHhhc--
Confidence 34566899999999999999998765 322222222 34555555555533 23333333333333333
Q ss_pred CCCcccEEEeecCCCC
Q 025575 117 DIDCIDLYYQHRVDTK 132 (250)
Q Consensus 117 ~~d~iDl~~lh~p~~~ 132 (250)
.+++||+|..+.|+..
T Consensus 144 ~i~si~iy~g~~g~~~ 159 (389)
T COG1748 144 EIESIDIYVGGLGEHG 159 (389)
T ss_pred cccEEEEEEecCCCCC
Confidence 5799999999998776
No 25
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=83.91 E-value=6.8 Score=32.98 Aligned_cols=106 Identities=14% Similarity=0.084 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC-CcceEecCcccHHHHHHHhhcCCceEEe
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG-KIKYIGLSEACAATIRRAHAVHPITAVQ 177 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G-~ir~iGvSn~~~~~l~~~~~~~~~~~~q 177 (250)
..+.+...+ +-+.|..+|+++|.+-..-.+......++.++.++++.+.+ .++...++....+.++.+.+.. ++.++
T Consensus 15 ~~s~e~~~~-i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i~ 92 (265)
T cd03174 15 TFSTEDKLE-IAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEVR 92 (265)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEEE
Confidence 345555544 44457788988888765544322111245678888888888 5666666665566677666654 45566
Q ss_pred eecCcCC--------cC------chhhhHHHHHHhCCeEEEec
Q 025575 178 LEWSLWS--------RD------VEAEIVPTCRELGIGIVAYG 206 (250)
Q Consensus 178 ~~~n~~~--------~~------~~~~~~~~~~~~gi~via~s 206 (250)
+.+.... +. .....++.++++|+.+...-
T Consensus 93 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 93 IFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 6554431 11 11367788888888776544
No 26
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=82.80 E-value=28 Score=29.44 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=93.2
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHH--HHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEI--LVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~--~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL 113 (250)
+.++..+.++.+++.|++.|-.-- |. ..+. ..=+++++.-.+++-|.-.... .++.+...+-+ +.|
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKv--g~-~~~~d~~~v~~vr~~~g~~~~l~vDan~--------~~~~~~a~~~~-~~l 152 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKV--GR-DPARDVAVVAALREAVGDDAELRVDANR--------GWTPKQAIRAL-RAL 152 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEec--CC-CHHHHHHHHHHHHHhcCCCCEEEEeCCC--------CcCHHHHHHHH-HHH
Confidence 345667777888899999887532 11 1222 2223444432334544433321 34554443333 334
Q ss_pred HHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcccHHHHHHHhhcCCceEEeeecCcCCc-Cchhhh
Q 025575 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEI 191 (250)
Q Consensus 114 ~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~ 191 (250)
+.+ ++.++..|-+. +.++.+.++++.-.+. ..|=+-++...+.++++...++++|+..+..-. ....++
T Consensus 153 ~~~-----~i~~iEeP~~~----~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~ 223 (265)
T cd03315 153 EDL-----GLDYVEQPLPA----DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRV 223 (265)
T ss_pred Hhc-----CCCEEECCCCc----ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHH
Confidence 444 44556666433 2356777787776665 444455688889888888888999988665432 112589
Q ss_pred HHHHHHhCCeEEEeccCccC
Q 025575 192 VPTCRELGIGIVAYGPLGQG 211 (250)
Q Consensus 192 ~~~~~~~gi~via~spl~~G 211 (250)
.+.|+++|+.++..+.+..|
T Consensus 224 ~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 224 LAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHcCCcEEecCccchH
Confidence 99999999999976555433
No 27
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=82.29 E-value=11 Score=33.74 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEee-cCCCC-----------CCHH----HH-HHHHHHHHHcCCcceEecCcccH
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQH-RVDTK-----------IPIE----VT-IGELKKLVEEGKIKYIGLSEACA 161 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh-~p~~~-----------~~~~----~~-~~~l~~l~~~G~ir~iGvSn~~~ 161 (250)
..+.+.+++.++..++ |++++|.+|.+. .|... .+.+ +. ..+.+.|.+.|.. ++++|||..
T Consensus 166 gqt~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa~ 243 (370)
T PRK06294 166 TQSLSDFIVDLHQAIT-LPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFT-RYELASYAK 243 (370)
T ss_pred CCCHHHHHHHHHHHHc-cCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCC-eeeeeeeeC
Confidence 4578888888887665 888999998775 22210 0111 11 2355566777764 578888863
No 28
>PRK13796 GTPase YqeH; Provisional
Probab=82.17 E-value=37 Score=30.41 Aligned_cols=137 Identities=13% Similarity=0.153 Sum_probs=87.2
Q ss_pred ceeecccccCCCCC----CCCChHHHHHHHHHHHHcC---CCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCcc
Q 025575 19 AQGLGCMAMSCLYG----PPEPEPDMIALIHHAINSG---ITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGIS 91 (250)
Q Consensus 19 ~lglG~~~~g~~~~----~~~~~~~~~~~l~~A~~~G---i~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~ 91 (250)
.+|-=|.++-. |+ ...+.++..++++...+.- +-.+|..+.-+. -...+.+... .+.-++|.+|....
T Consensus 35 ~~C~RC~~l~h-y~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s--~~~~L~~~~~--~kpviLViNK~DLl 109 (365)
T PRK13796 35 VYCQRCFRLKH-YNEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGS--WIPGLHRFVG--NNPVLLVGNKADLL 109 (365)
T ss_pred eEchhhhhhhc-cCcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCCc--hhHHHHHHhC--CCCEEEEEEchhhC
Confidence 45555554432 32 2235566777777776555 456786664442 3444444443 45678899998653
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHH
Q 025575 92 FADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRR 166 (250)
Q Consensus 92 ~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~ 166 (250)
. .....+.+.+.++...+.+|....|++++.... ...++++++.+.+..+.+.+--+|.+|..-..|-.
T Consensus 110 ~-----~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN 178 (365)
T PRK13796 110 P-----KSVKKNKVKNWLRQEAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLIN 178 (365)
T ss_pred C-----CccCHHHHHHHHHHHHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHH
Confidence 1 123456666667777777786656788776543 34578888888888777888999999997665433
No 29
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=82.06 E-value=5.8 Score=32.60 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=45.1
Q ss_pred HHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecC-cccHHHHHHHhhcCCceEEeee
Q 025575 112 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLE 179 (250)
Q Consensus 112 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~q~~ 179 (250)
.+..+|.|++=+.+.....+..+.+.. ..+.+.. .+.++.+||. |-+++.+.++++...++++|+.
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLH 82 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLH 82 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEEC
Confidence 345599999998754433333444333 3333322 3568899996 7789999999988889999985
No 30
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=82.04 E-value=10 Score=34.44 Aligned_cols=61 Identities=18% Similarity=0.087 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeec-CCCC-----------CC-HHH---H-HHHHHHHHHcCCcceEecCcccH
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHR-VDTK-----------IP-IEV---T-IGELKKLVEEGKIKYIGLSEACA 161 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~-p~~~-----------~~-~~~---~-~~~l~~l~~~G~ir~iGvSn~~~ 161 (250)
..+.+.+++.++..++ |+.++|.+|.+.- |... .+ .++ . ..+.+.|.+.|.. ++++|||..
T Consensus 178 gqt~e~~~~tl~~~~~-l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa~ 255 (400)
T PRK07379 178 HQTLEDWQASLEAAIA-LNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYAK 255 (400)
T ss_pred CCCHHHHHHHHHHHHc-CCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheEC
Confidence 3466777776666554 7778888776642 2110 01 111 2 2456667778875 589999863
No 31
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=82.04 E-value=10 Score=31.21 Aligned_cols=81 Identities=15% Similarity=0.217 Sum_probs=52.0
Q ss_pred HHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCC-cceEecC-cccHHHHHHHhhcCCceEEeeecCcCCcCchhhh
Q 025575 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGK-IKYIGLS-EACAATIRRAHAVHPITAVQLEWSLWSRDVEAEI 191 (250)
Q Consensus 114 ~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~-ir~iGvS-n~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~ 191 (250)
..+|.||+=+++.-...+..+.+ ...++.+.-. ++.+||. |.+.+.+.++++...++.+|+.-. ...+.
T Consensus 19 ~~~gad~iG~If~~~SpR~Vs~~----~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~-----e~~~~ 89 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRYVSPE----QAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGD-----EDPEY 89 (208)
T ss_pred HHcCCCEEEEEEcCCCCCcCCHH----HHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCC-----CCHHH
Confidence 45788888877665322333333 3334444333 8899988 568899999999999999998432 12456
Q ss_pred HHHHHHhC-CeEE
Q 025575 192 VPTCRELG-IGIV 203 (250)
Q Consensus 192 ~~~~~~~g-i~vi 203 (250)
++..++.. +.|+
T Consensus 90 ~~~l~~~~~~~v~ 102 (208)
T COG0135 90 IDQLKEELGVPVI 102 (208)
T ss_pred HHHHHhhcCCceE
Confidence 66666654 5554
No 32
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=82.04 E-value=0.62 Score=41.45 Aligned_cols=54 Identities=17% Similarity=0.297 Sum_probs=38.6
Q ss_pred cCCcceEecCcccHHHHHHHhhcCC-ceEEeeecCcCCcCchhhhHHHHHHhCCe
Q 025575 148 EGKIKYIGLSEACAATIRRAHAVHP-ITAVQLEWSLWSRDVEAEIVPTCRELGIG 201 (250)
Q Consensus 148 ~G~ir~iGvSn~~~~~l~~~~~~~~-~~~~q~~~n~~~~~~~~~~~~~~~~~gi~ 201 (250)
-|+||++||--++++.+.++..... -+..+.+..++....+..+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 4999999999999999999876522 23344444444433345888888888876
No 33
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=81.82 E-value=16 Score=30.25 Aligned_cols=87 Identities=11% Similarity=0.063 Sum_probs=60.4
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcccHHHHHHHhhcCCceEEeeecCcCCc-CchhhhHHHHHHh
Q 025575 121 IDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCREL 198 (250)
Q Consensus 121 iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~ 198 (250)
.++.++..|-+.. .++.+.+|.+...+. ..+=|-++.+.+.++++...++++|+..+..-. ..-.++...|+++
T Consensus 120 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPD----DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCcc----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 5666777765432 356677788877665 344555678888778877778899987665432 1124889999999
Q ss_pred CCeEEEeccCccC
Q 025575 199 GIGIVAYGPLGQG 211 (250)
Q Consensus 199 gi~via~spl~~G 211 (250)
|+.++..+.+..|
T Consensus 196 gi~~~~~~~~~s~ 208 (229)
T cd00308 196 GIRVMVHGTLESS 208 (229)
T ss_pred CCEEeecCCCCCH
Confidence 9999987765444
No 34
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=81.03 E-value=35 Score=29.37 Aligned_cols=151 Identities=11% Similarity=0.127 Sum_probs=91.3
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCc----------CCcCCCChHHHHHHHhcCCCCC-CEEEEeeeCcccCCCCCCCCCHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTS----------DIYGPYTNEILVGKALKGGMRE-RVELATKFGISFADGGKIRGDPAY 104 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg~g~sE~~lg~~l~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~ 104 (250)
+.++..+..+.+.+.|+..||.- ..|+. +.+.+.+.++...+. ++-|..|+.+.. +.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~--~~~~~~eiv~~vr~~~~~Pv~vKl~~~~----------~~ 167 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGT--DPEAVAEIVKAVKKATDVPVIVKLTPNV----------TD 167 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccC--CHHHHHHHHHHHHhccCCCEEEEeCCCc----------hh
Confidence 45677888888888899998862 22332 566666666654222 677888986431 12
Q ss_pred HHHHHHHHHHHcCCCcccEEE------eecCC--C-----------CCCHHHHHHHHHHHHHcCCcceEecCcc-cHHHH
Q 025575 105 VRACCEASLKRLDIDCIDLYY------QHRVD--T-----------KIPIEVTIGELKKLVEEGKIKYIGLSEA-CAATI 164 (250)
Q Consensus 105 i~~~l~~sL~~L~~d~iDl~~------lh~p~--~-----------~~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l 164 (250)
+ ..+-+.++..|.|.|++.= +|.-. + .....-.++.+.++++.=.+.-||+... +++.+
T Consensus 168 ~-~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da 246 (296)
T cd04740 168 I-VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDA 246 (296)
T ss_pred H-HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 2 2334556778887776531 11100 0 0001125677778877667888998886 78899
Q ss_pred HHHhhcCCceEEeeecCcCC-c----CchhhhHHHHHHhCC
Q 025575 165 RRAHAVHPITAVQLEWSLWS-R----DVEAEIVPTCRELGI 200 (250)
Q Consensus 165 ~~~~~~~~~~~~q~~~n~~~-~----~~~~~~~~~~~~~gi 200 (250)
.+++... .+.+|+-=.++. + ....++.++.+++|.
T Consensus 247 ~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 247 LEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHcC-CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 9988765 577876322222 1 122467777777774
No 35
>PRK08392 hypothetical protein; Provisional
Probab=81.02 E-value=29 Score=28.43 Aligned_cols=148 Identities=15% Similarity=0.118 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcC---C-CCCCE--EEEeeeCcccCCCCCCCCCHHHHHHHHHH
Q 025575 38 PDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG---G-MRERV--ELATKFGISFADGGKIRGDPAYVRACCEA 111 (250)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~---~-~R~~~--~i~tK~~~~~~~~~~~~~~~~~i~~~l~~ 111 (250)
....++++.|.+.|++.+=.+++.-.- ...-+-..++. . .+.++ .+..-+... +.. ....++
T Consensus 14 ~~~~e~v~~A~~~Gl~~i~iTdH~~~~-~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~----------~~~-~~~~~~ 81 (215)
T PRK08392 14 GSVRDNIAEAERKGLRLVGISDHIHYF-TPSKFNAYINEIRQWGEESEIVVLAGIEANIT----------PNG-VDITDD 81 (215)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCCcc-chhhHHHHHHHHHHHhhccCceEEEeEEeeec----------CCc-chhHHH
Confidence 347899999999999988666664210 11112222211 1 12233 333333221 111 123334
Q ss_pred HHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCc-------cc-HHHHHHHhhc---CCceEEeeec
Q 025575 112 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE-------AC-AATIRRAHAV---HPITAVQLEW 180 (250)
Q Consensus 112 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn-------~~-~~~l~~~~~~---~~~~~~q~~~ 180 (250)
.++. .||+ +.-+|.........+-.+.+.++.+.+.+.-+|=-. +. .+.++++++. .. ..+++
T Consensus 82 ~~~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g---~~lEi 155 (215)
T PRK08392 82 FAKK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG---KAFEI 155 (215)
T ss_pred HHhh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC---CEEEE
Confidence 4443 3555 556784322223456678888888888876665321 11 1233333322 11 12333
Q ss_pred CcCCcCchhhhHHHHHHhCCeEE
Q 025575 181 SLWSRDVEAEIVPTCRELGIGIV 203 (250)
Q Consensus 181 n~~~~~~~~~~~~~~~~~gi~vi 203 (250)
|-..+.+...+++.|++.|+.++
T Consensus 156 Nt~~~~p~~~~l~~~~~~G~~~~ 178 (215)
T PRK08392 156 SSRYRVPDLEFIRECIKRGIKLT 178 (215)
T ss_pred eCCCCCCCHHHHHHHHHcCCEEE
Confidence 32222233579999999998765
No 36
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=79.27 E-value=19 Score=32.43 Aligned_cols=91 Identities=13% Similarity=0.191 Sum_probs=61.2
Q ss_pred EEeecCCCC-----------CCHHHHHHHHHHHHHcCC----cceEecC--cccHHHHHHHhhc---C------CceEEe
Q 025575 124 YYQHRVDTK-----------IPIEVTIGELKKLVEEGK----IKYIGLS--EACAATIRRAHAV---H------PITAVQ 177 (250)
Q Consensus 124 ~~lh~p~~~-----------~~~~~~~~~l~~l~~~G~----ir~iGvS--n~~~~~l~~~~~~---~------~~~~~q 177 (250)
+-||.|++. .+++++++++.+..++.. +-|+=+. |-+.++..++.+. . +..++-
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNL 311 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNL 311 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEE
Confidence 678999653 467889999988865433 1233222 5566666555443 4 568999
Q ss_pred eecCcCCcC-----ch---hhhHHHHHHhCCeEEEeccCc------cCcCC
Q 025575 178 LEWSLWSRD-----VE---AEIVPTCRELGIGIVAYGPLG------QGFLS 214 (250)
Q Consensus 178 ~~~n~~~~~-----~~---~~~~~~~~~~gi~via~spl~------~G~L~ 214 (250)
++||+.... .. ....+.++++||.+....+.| +|.|.
T Consensus 312 Ip~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~DI~AACGQL~ 362 (371)
T PRK14461 312 IPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVEIAAACGQLA 362 (371)
T ss_pred ecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcChhhcCcccc
Confidence 999996432 11 366777889999999988774 67776
No 37
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=77.70 E-value=12 Score=34.52 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEee
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQH 127 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh 127 (250)
..+.+.+++.++..++ |+.++|++|.+.
T Consensus 226 gqT~e~~~~~l~~~~~-l~~~~is~y~L~ 253 (449)
T PRK09058 226 GQTPEIWQQDLAIVRD-LGLDGVDLYALN 253 (449)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEeccc
Confidence 4578888888877665 899999999775
No 38
>PRK05660 HemN family oxidoreductase; Provisional
Probab=77.34 E-value=19 Score=32.41 Aligned_cols=61 Identities=11% Similarity=0.046 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEee-cCCCC-------CC-HHHHH----HHHHHHHHcCCcceEecCcccH
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQH-RVDTK-------IP-IEVTI----GELKKLVEEGKIKYIGLSEACA 161 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh-~p~~~-------~~-~~~~~----~~l~~l~~~G~ir~iGvSn~~~ 161 (250)
..+.+.+.+.++..++ |++++|.+|.+- .|+.. .+ .++.+ .+.+.|.+.|. ..+++|||..
T Consensus 170 gqt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yei~~fa~ 243 (378)
T PRK05660 170 DQSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGY-QQYETSAYAK 243 (378)
T ss_pred CCCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCC-cEeecccccC
Confidence 4577778777777655 888888888664 22210 11 12222 23445566676 4578888854
No 39
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=76.87 E-value=17 Score=29.60 Aligned_cols=151 Identities=20% Similarity=0.210 Sum_probs=88.8
Q ss_pred HHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHH-----------H
Q 025575 42 ALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACC-----------E 110 (250)
Q Consensus 42 ~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l-----------~ 110 (250)
+++..-++.|-+.+|-....| . +-..|++ . +++.. .+ ...+++.+.+++ +
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG-----~-LL~~L~~-~-k~v~g---~G--------vEid~~~v~~cv~rGv~Viq~Dld 65 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG-----E-LLAYLKD-E-KQVDG---YG--------VEIDPDNVAACVARGVSVIQGDLD 65 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch-----H-HHHHHHH-h-cCCeE---EE--------EecCHHHHHHHHHcCCCEEECCHH
Confidence 455666777888888665444 1 2244443 1 11111 01 123455555554 4
Q ss_pred HHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhh-cC-CceEEeeecCcCCcC--
Q 025575 111 ASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHA-VH-PITAVQLEWSLWSRD-- 186 (250)
Q Consensus 111 ~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~-~~-~~~~~q~~~n~~~~~-- 186 (250)
+-|..+.-+.+|.+.+...= ..+......|+++..-|+--=|++.||.-+...--+- .+ -|..-+++|+-++..
T Consensus 66 ~gL~~f~d~sFD~VIlsqtL--Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNi 143 (193)
T PF07021_consen 66 EGLADFPDQSFDYVILSQTL--QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNI 143 (193)
T ss_pred HhHhhCCCCCccEEehHhHH--HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCc
Confidence 44555555566666554321 1122345567777888887789999998877655433 22 244556676655432
Q ss_pred ---chhhhHHHHHHhCCeEEEeccCccCcC
Q 025575 187 ---VEAEIVPTCRELGIGIVAYGPLGQGFL 213 (250)
Q Consensus 187 ---~~~~~~~~~~~~gi~via~spl~~G~L 213 (250)
...+.-++|++.|+.|.-..++..+.-
T Consensus 144 h~~Ti~DFe~lc~~~~i~I~~~~~~~~~~~ 173 (193)
T PF07021_consen 144 HLCTIKDFEDLCRELGIRIEERVFLDGGRR 173 (193)
T ss_pred ccccHHHHHHHHHHCCCEEEEEEEEcCCCC
Confidence 115889999999999999999887653
No 40
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=76.31 E-value=40 Score=27.35 Aligned_cols=145 Identities=14% Similarity=0.044 Sum_probs=80.6
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCC----CCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGG----MRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~----~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~ 111 (250)
+..++.+++..+++.|+...|. | +..+..+++.. .++++++.-= ....+.+++.+..
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i---~-----~~~l~p~m~~vG~~w~~~~i~va~e-----------~~as~~~~~~l~~ 69 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDI---I-----EEGLAPGMDIVGDKYEEGEIFVPEL-----------LMAADAMKAGLDL 69 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHH---H-----HHHHHHHHHHHHHHHccCCeeHHHH-----------HHHHHHHHHHHHH
Confidence 6788999999999998764442 1 22333333331 3455555321 2234455555555
Q ss_pred HHHHcCCCc---ccEEEeecCCCCCCHHHHHHHHHHHHHcCC-cceEecCcccHHHHHHHhhcCCceEEeeecCcCCcC-
Q 025575 112 SLKRLDIDC---IDLYYQHRVDTKIPIEVTIGELKKLVEEGK-IKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD- 186 (250)
Q Consensus 112 sL~~L~~d~---iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~- 186 (250)
....+.... ---+++-.+..+...-...-.-.-++..|. +.++| .+.+.+.+.+++....++++-+.++.....
T Consensus 70 l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~ 148 (201)
T cd02070 70 LKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTTTMG 148 (201)
T ss_pred HHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEeccccccHH
Confidence 555553322 113444444333222122222234566776 46678 566788888877777788877766544332
Q ss_pred chhhhHHHHHHhCC
Q 025575 187 VEAEIVPTCRELGI 200 (250)
Q Consensus 187 ~~~~~~~~~~~~gi 200 (250)
.-.++++.+++.+.
T Consensus 149 ~~~~~i~~lr~~~~ 162 (201)
T cd02070 149 GMKEVIEALKEAGL 162 (201)
T ss_pred HHHHHHHHHHHCCC
Confidence 12578888888753
No 41
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=76.04 E-value=54 Score=28.75 Aligned_cols=132 Identities=11% Similarity=0.022 Sum_probs=82.2
Q ss_pred ChHHHHHHHHHHHHcCCCeEeC---cC-----CcCCC----ChHHHHHHHhcCC---CCCCEEEEeeeCcccCCCCCCCC
Q 025575 36 PEPDMIALIHHAINSGITLLDT---SD-----IYGPY----TNEILVGKALKGG---MRERVELATKFGISFADGGKIRG 100 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dt---A~-----~Yg~g----~sE~~lg~~l~~~---~R~~~~i~tK~~~~~~~~~~~~~ 100 (250)
+.++..+....+.+.|+..||- .+ .+|.| ..-+.+.+.++.. -..++-|+.|+...+ +
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~------~- 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGW------D- 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCC------C-
Confidence 5566777777888899999983 22 35544 3334455555543 112467888875432 1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHH---HHHHHHHHHHHcCCcceEecCcc-cHHHHHHHhhcCCceEE
Q 025575 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIE---VTIGELKKLVEEGKIKYIGLSEA-CAATIRRAHAVHPITAV 176 (250)
Q Consensus 101 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~---~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~ 176 (250)
+.+.. ..+-+.++..| +|.+-+|.-....... --|+...++++.-.|--||.... +++...++++....+.+
T Consensus 146 ~~~~~-~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgV 221 (312)
T PRK10550 146 SGERK-FEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAV 221 (312)
T ss_pred CchHH-HHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEE
Confidence 11222 35556677776 5777888643322111 13778888888877888888875 88888888876666666
Q ss_pred ee
Q 025575 177 QL 178 (250)
Q Consensus 177 q~ 178 (250)
++
T Consensus 222 mi 223 (312)
T PRK10550 222 MI 223 (312)
T ss_pred EE
Confidence 66
No 42
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=75.90 E-value=41 Score=29.90 Aligned_cols=61 Identities=16% Similarity=0.052 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeec-CCCC--------CCHHHHH-HHHHHHHHcCCcceEecCcccH
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHR-VDTK--------IPIEVTI-GELKKLVEEGKIKYIGLSEACA 161 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~-p~~~--------~~~~~~~-~~l~~l~~~G~ir~iGvSn~~~ 161 (250)
..+.+.+++.++..+ +|+.++|.+|.+.- |... .+.++.+ .+.+.|.+.|. ..+++|||..
T Consensus 161 gqt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 161 LDNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 446777777776654 48888888876642 2110 1112233 44556666776 4688888864
No 43
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=75.30 E-value=39 Score=30.32 Aligned_cols=89 Identities=15% Similarity=0.181 Sum_probs=58.0
Q ss_pred eecCCCC-----------CCHHHHHHHHHHHH-HcCC---cceEecCc--ccHHHHHHHhhc---CCceEEeeecCcCCc
Q 025575 126 QHRVDTK-----------IPIEVTIGELKKLV-EEGK---IKYIGLSE--ACAATIRRAHAV---HPITAVQLEWSLWSR 185 (250)
Q Consensus 126 lh~p~~~-----------~~~~~~~~~l~~l~-~~G~---ir~iGvSn--~~~~~l~~~~~~---~~~~~~q~~~n~~~~ 185 (250)
||.+++. .+++++++++.++. +.|+ |+++=+.. -+.+++.++.+. .+..++-++||++..
T Consensus 226 Lha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~~ 305 (356)
T PRK14462 226 LHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHEG 305 (356)
T ss_pred CCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCCC
Confidence 8988653 34577888887655 4444 46665554 456666665443 456788999998753
Q ss_pred C----ch----hhhHHHHHHhCCeEEEeccCc------cCcCC
Q 025575 186 D----VE----AEIVPTCRELGIGIVAYGPLG------QGFLS 214 (250)
Q Consensus 186 ~----~~----~~~~~~~~~~gi~via~spl~------~G~L~ 214 (250)
. +. ....+..+++|+.+....+.+ +|.|.
T Consensus 306 ~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~dI~aACGQL~ 348 (356)
T PRK14462 306 SKFERPSLEDMIKFQDYLNSKGLLCTIRESKGLDISAACGQLR 348 (356)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCchhhcCccch
Confidence 1 11 245566778899999888774 56665
No 44
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=75.12 E-value=9.6 Score=31.38 Aligned_cols=66 Identities=20% Similarity=0.253 Sum_probs=43.6
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecC-cccHHHHHHHhhcCCceEEeeec
Q 025575 113 LKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEW 180 (250)
Q Consensus 113 L~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~q~~~ 180 (250)
+..+|.|++=+.+.....+..+.+ ..+.+.... .+.+..+||. |-+++.+.++++...++++|+.-
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~~~-~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg 85 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVSPE-QAAELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHG 85 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCCHH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 345899998887433322233333 333333222 3568899987 56889999999888899999853
No 45
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=74.81 E-value=58 Score=28.48 Aligned_cols=94 Identities=15% Similarity=0.183 Sum_probs=64.2
Q ss_pred HHHHHcCCCcccEEEeecCCC-----CCCHHHHHHHHHHHHHcCCcc-eEecCcc---cHHHHHHHhhcCCc-eEEeeec
Q 025575 111 ASLKRLDIDCIDLYYQHRVDT-----KIPIEVTIGELKKLVEEGKIK-YIGLSEA---CAATIRRAHAVHPI-TAVQLEW 180 (250)
Q Consensus 111 ~sL~~L~~d~iDl~~lh~p~~-----~~~~~~~~~~l~~l~~~G~ir-~iGvSn~---~~~~l~~~~~~~~~-~~~q~~~ 180 (250)
...+++| .|++-+|-... +.+..|..+.||++.+.=+|- -||=|.. +++.++++.+...= -|.-...
T Consensus 158 k~Vk~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSa 234 (403)
T COG2069 158 KCVKKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASA 234 (403)
T ss_pred HHHHHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeecc
Confidence 3445566 57888886533 346789999999999888774 5677765 67788888766221 1222223
Q ss_pred CcCCcCchhhhHHHHHHhCCeEEEeccCc
Q 025575 181 SLWSRDVEAEIVPTCRELGIGIVAYGPLG 209 (250)
Q Consensus 181 n~~~~~~~~~~~~~~~~~gi~via~spl~ 209 (250)
|+- .. .+.+.+.+.++|=.|++|+++.
T Consensus 235 nld-lD-y~~ia~AA~ky~H~VLswt~~D 261 (403)
T COG2069 235 NLD-LD-YERIAEAALKYDHVVLSWTQMD 261 (403)
T ss_pred ccc-cC-HHHHHHHHHhcCceEEEeeccC
Confidence 322 22 2589999999999999999874
No 46
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=74.36 E-value=59 Score=28.42 Aligned_cols=147 Identities=15% Similarity=0.123 Sum_probs=80.2
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHH----HHH---hcCC-CCCCEEEEeeeCcccCCCCCCCCCHHHHH
Q 025575 35 EPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILV----GKA---LKGG-MRERVELATKFGISFADGGKIRGDPAYVR 106 (250)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~l----g~~---l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~i~ 106 (250)
.+.+++.++++.+.+.|++.+.-. | | |.++ -+. +++. .-.++.|+|-... +.
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~t---G-G--EPll~~~l~~li~~i~~~~~~~~i~itTNG~l--------------l~ 108 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLT---G-G--EPLLRKDLEDIIAALAALPGIRDLALTTNGYL--------------LA 108 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---C-C--CCcCccCHHHHHHHHHhcCCCceEEEEcCchh--------------HH
Confidence 467888999999999999877632 3 2 2221 222 3321 1235566555321 11
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCC--------CCCHHHHHHHHHHHHHcCC----cceEecCcccHHHHHHHhhc---C
Q 025575 107 ACCEASLKRLDIDCIDLYYQHRVDT--------KIPIEVTIGELKKLVEEGK----IKYIGLSEACAATIRRAHAV---H 171 (250)
Q Consensus 107 ~~l~~sL~~L~~d~iDl~~lh~p~~--------~~~~~~~~~~l~~l~~~G~----ir~iGvSn~~~~~l~~~~~~---~ 171 (250)
+. -+.|...|++.|- +-+|..++ ...+++++++++.+++.|. |..+.+-..+.+++.++++. .
T Consensus 109 ~~-~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~ 186 (331)
T PRK00164 109 RR-AAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDR 186 (331)
T ss_pred HH-HHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhC
Confidence 11 2234444554432 33444332 2357889999999999885 23444445555666665443 4
Q ss_pred CceEEeeecCcCCcC---------chhhhHHHHHHhCCeEE
Q 025575 172 PITAVQLEWSLWSRD---------VEAEIVPTCRELGIGIV 203 (250)
Q Consensus 172 ~~~~~q~~~n~~~~~---------~~~~~~~~~~~~gi~vi 203 (250)
.+.+.-++|.++... ...++++.++++|+.+.
T Consensus 187 gv~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 227 (331)
T PRK00164 187 GIQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQ 227 (331)
T ss_pred CCeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCccc
Confidence 455555666654321 11467788888765443
No 47
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=73.73 E-value=41 Score=28.35 Aligned_cols=90 Identities=17% Similarity=0.086 Sum_probs=53.0
Q ss_pred HHHHHHcCCCcccEEEeecCCCCCCH-HHHHHHHHHHHHcCCcceEecCcc-cHHHHHHHhhcCCceEEeeecCcCCcC-
Q 025575 110 EASLKRLDIDCIDLYYQHRVDTKIPI-EVTIGELKKLVEEGKIKYIGLSEA-CAATIRRAHAVHPITAVQLEWSLWSRD- 186 (250)
Q Consensus 110 ~~sL~~L~~d~iDl~~lh~p~~~~~~-~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~q~~~n~~~~~- 186 (250)
-+.|+.+| +|.+.+|..+..... .--++.+.++++.-.+.-|..... +++.+.++++...++.+.+---+....
T Consensus 161 ~~~l~~~G---~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~ 237 (254)
T TIGR00735 161 AKEVEKLG---AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREI 237 (254)
T ss_pred HHHHHHcC---CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCC
Confidence 33445565 566777765442211 112556666666666666666543 678888888776566655422222222
Q ss_pred chhhhHHHHHHhCCeE
Q 025575 187 VEAEIVPTCRELGIGI 202 (250)
Q Consensus 187 ~~~~~~~~~~~~gi~v 202 (250)
...++.+.|+++|+.+
T Consensus 238 ~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 238 TIGEVKEYLAERGIPV 253 (254)
T ss_pred CHHHHHHHHHHCCCcc
Confidence 1258899999999865
No 48
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=73.68 E-value=35 Score=27.68 Aligned_cols=145 Identities=10% Similarity=-0.013 Sum_probs=80.8
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCC----CCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGG----MRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~----~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~ 111 (250)
+.+++.+++..+++.|+...|.- +..+..+++.. .++++++.-= ....+.+++.+..
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~iG~~w~~gei~va~~-----------~~a~~~~~~~l~~ 70 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELI--------EKGLMAGMGVVGKLFEDGELFLPHV-----------MMSADAMLAGIKV 70 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHcCCCccHHHH-----------HHHHHHHHHHHHH
Confidence 67889999999999998765532 23333333331 3455554211 2234555666655
Q ss_pred HHHHcCCC----cccEEEeecCCCCCCHHHHHHHHHHHHHcCC-cceEecCcccHHHHHHHhhcCCceEEeeecCcCCcC
Q 025575 112 SLKRLDID----CIDLYYQHRVDTKIPIEVTIGELKKLVEEGK-IKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD 186 (250)
Q Consensus 112 sL~~L~~d----~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~ 186 (250)
....+... .---+++-.+..+...-...-.-.-++..|. |.++|. +-+.+.+.+.+....++++.+.+......
T Consensus 71 l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~~~pd~v~lS~~~~~~~ 149 (197)
T TIGR02370 71 LTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKKEKPLMLTGSALMTTTM 149 (197)
T ss_pred HHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHHcCCCEEEEccccccCH
Confidence 55555421 1112344443332222122222334556675 566774 45667777777777788888776654432
Q ss_pred c-hhhhHHHHHHhCC
Q 025575 187 V-EAEIVPTCRELGI 200 (250)
Q Consensus 187 ~-~~~~~~~~~~~gi 200 (250)
. -.++++.+++.|.
T Consensus 150 ~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 150 YGQKDINDKLKEEGY 164 (197)
T ss_pred HHHHHHHHHHHHcCC
Confidence 2 2588899998854
No 49
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=73.14 E-value=75 Score=29.06 Aligned_cols=87 Identities=13% Similarity=-0.001 Sum_probs=61.2
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHc------CCcceEecCcccHHHHHHHhhcCCceEEeeecCcCCcC-chhhhHH
Q 025575 121 IDLYYQHRVDTKIPIEVTIGELKKLVEE------GKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEIVP 193 (250)
Q Consensus 121 iDl~~lh~p~~~~~~~~~~~~l~~l~~~------G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~ 193 (250)
+++ ++..|-+..+.++.++.|.+|++. ..=-..+=|-++.+.+.++++..-.+++|+..+-.-.- .-.++.+
T Consensus 264 ~~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~ 342 (408)
T TIGR01502 264 FHL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIM 342 (408)
T ss_pred CCe-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHH
Confidence 355 788775544334567778888766 22234456667899999998888889999977754321 1258999
Q ss_pred HHHHhCCeEEEeccC
Q 025575 194 TCRELGIGIVAYGPL 208 (250)
Q Consensus 194 ~~~~~gi~via~spl 208 (250)
+|+++||.+...+..
T Consensus 343 lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 343 YCKANGMGAYVGGTC 357 (408)
T ss_pred HHHHcCCEEEEeCCC
Confidence 999999999986554
No 50
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=72.88 E-value=20 Score=32.54 Aligned_cols=136 Identities=19% Similarity=0.158 Sum_probs=71.9
Q ss_pred HHHHHHHHHcCCCe-EeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCcc---cCCCCCCCCCHHHHHHHHHHHHHHc
Q 025575 41 IALIHHAINSGITL-LDTSDIYGPYTNEILVGKALKGGMRERVELATKFGIS---FADGGKIRGDPAYVRACCEASLKRL 116 (250)
Q Consensus 41 ~~~l~~A~~~Gi~~-~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~---~~~~~~~~~~~~~i~~~l~~sL~~L 116 (250)
.+=++.|++.|-.. .|-+ ..| .-..+.+.+-+. ..+-|.|=--+. .......+.+.+.+-+.+++..+
T Consensus 80 ~~K~~~A~~~GADtiMDLS-tGg---dl~~iR~~il~~--s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie~qa~-- 151 (423)
T TIGR00190 80 VEKALIAIKYGADTVMDLS-TGG---DLDEIRKAILDA--VPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIEKQAK-- 151 (423)
T ss_pred HHHHHHHHHcCCCeEeecc-CCC---CHHHHHHHHHHc--CCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHH--
Confidence 34468999999874 4544 334 444444444321 111111100000 00001136778888888888776
Q ss_pred CCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhcCCceEEeeecCcCCcCchhhhHHHHH
Q 025575 117 DIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCR 196 (250)
Q Consensus 117 ~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~ 196 (250)
+=+|.+-+|.- -+.+.++.++++|++ .|+-+-....+...+.... .=||+.... +++++.|+
T Consensus 152 --dGVDfmTiH~G-------i~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~~~------~ENPlye~f-D~lLeI~~ 213 (423)
T TIGR00190 152 --DGVDFMTIHAG-------VLLEYVERLKRSGRI--TGIVSRGGAILAAWMLHHH------KENPLYKNF-DYILEIAK 213 (423)
T ss_pred --hCCCEEEEccc-------hhHHHHHHHHhCCCc--cCeecCcHHHHHHHHHHcC------CcCchHHHH-HHHHHHHH
Confidence 56899999974 367888999999965 5555554444444332211 123333321 35555555
Q ss_pred HhCCeE
Q 025575 197 ELGIGI 202 (250)
Q Consensus 197 ~~gi~v 202 (250)
+++|.+
T Consensus 214 ~yDVtl 219 (423)
T TIGR00190 214 EYDVTL 219 (423)
T ss_pred HhCeee
Confidence 555544
No 51
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=71.87 E-value=21 Score=33.05 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEe-ecCCCC----------C-CHHH----HHHHHHHHHHcCCcceEecCcccH
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQ-HRVDTK----------I-PIEV----TIGELKKLVEEGKIKYIGLSEACA 161 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~l-h~p~~~----------~-~~~~----~~~~l~~l~~~G~ir~iGvSn~~~ 161 (250)
..+.+.+.+.++..+ .|+.+.|.+|.+ |.|... . +.++ ...+.+.|.+.|.. .+|+++|..
T Consensus 215 gqt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~-~~~~~~far 291 (453)
T PRK13347 215 HQTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYV-PIGLDHFAL 291 (453)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCE-EEeccceeC
Confidence 457888888777766 488899888865 333210 1 1122 22456777788875 599999964
No 52
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=71.62 E-value=79 Score=28.66 Aligned_cols=149 Identities=13% Similarity=0.108 Sum_probs=89.6
Q ss_pred ChHHHHHHHHHHHH-cCCCeEeCcCCcCCCChH--HHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHH
Q 025575 36 PEPDMIALIHHAIN-SGITLLDTSDIYGPYTNE--ILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEAS 112 (250)
Q Consensus 36 ~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~g~sE--~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~s 112 (250)
+.++..+.++.+++ .|++.|=.-- |....+ ...=+++++.- .++.|..=.. ..++++.. .+.
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKv--G~~~~~~di~~v~avRea~-~~~~l~vDaN--------~~w~~~~A----~~~ 232 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKG--GVLPGEEEIEAVKALAEAF-PGARLRLDPN--------GAWSLETA----IRL 232 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEec--CCCCHHHHHHHHHHHHHhC-CCCcEEEeCC--------CCcCHHHH----HHH
Confidence 44556666667765 5998775321 111111 11223333322 1333333322 13455443 333
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcccHHHHHHHhhcCCceEEeeecCcCCcC-chhh
Q 025575 113 LKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAE 190 (250)
Q Consensus 113 L~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~ 190 (250)
+++|. - ++.++..|-+ .++.|.+|++...+. ..|=|-++..++.++++...++++|......-.- ...+
T Consensus 233 ~~~l~--~-~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~k 303 (395)
T cd03323 233 AKELE--G-VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVR 303 (395)
T ss_pred HHhcC--c-CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHH
Confidence 44453 3 6667777643 467888888887665 5666677888999998888889998876644321 1258
Q ss_pred hHHHHHHhCCeEEEeccC
Q 025575 191 IVPTCRELGIGIVAYGPL 208 (250)
Q Consensus 191 ~~~~~~~~gi~via~spl 208 (250)
+.+.|+++|+.+...+..
T Consensus 304 ia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 304 VAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHcCCeEEEecCc
Confidence 999999999999987654
No 53
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=70.91 E-value=71 Score=27.79 Aligned_cols=184 Identities=14% Similarity=0.082 Sum_probs=92.0
Q ss_pred ceeecccccCCCCCCCCChHHHHHHHHHHHH-cCCCeEeCcCCcCCCC---hHHHHHHHhcCC--CCCCEEEEeeeCccc
Q 025575 19 AQGLGCMAMSCLYGPPEPEPDMIALIHHAIN-SGITLLDTSDIYGPYT---NEILVGKALKGG--MRERVELATKFGISF 92 (250)
Q Consensus 19 ~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~g~---sE~~lg~~l~~~--~R~~~~i~tK~~~~~ 92 (250)
.|.||.|.-+.......+.++..+.+...++ -|++.+|---.|+.-. +-..+-++|+.+ .+..+.|+.-+....
T Consensus 71 iiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~p 150 (294)
T cd06543 71 IVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKISFTLPVLP 150 (294)
T ss_pred EEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4577776643211122345555556666664 4889888765554311 124455666554 333565655554321
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHcC--CCcccEEEeecCCC--CCCH-HHHHHHHHHHHHcCCcceEecCcccHHHHHHH
Q 025575 93 ADGGKIRGDPAYVRACCEASLKRLD--IDCIDLYYQHRVDT--KIPI-EVTIGELKKLVEEGKIKYIGLSEACAATIRRA 167 (250)
Q Consensus 93 ~~~~~~~~~~~~i~~~l~~sL~~L~--~d~iDl~~lh~p~~--~~~~-~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~ 167 (250)
..+.++.+ .+-+..+.-| +++|-++-...-.. ..+. ..+..+.+.++.+=+--+=+ ++..++-..
T Consensus 151 -----~gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~s~~~~~~~ 220 (294)
T cd06543 151 -----TGLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---LSDAELWAM 220 (294)
T ss_pred -----CCCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---CCHHHHHHH
Confidence 13343332 2344444455 35666655543322 1222 34455555555442221111 344444444
Q ss_pred hhcCCceEEeeecC--cCCcCchhhhHHHHHHhCCeEEEeccCccCcC
Q 025575 168 HAVHPITAVQLEWS--LWSRDVEAEIVPTCRELGIGIVAYGPLGQGFL 213 (250)
Q Consensus 168 ~~~~~~~~~q~~~n--~~~~~~~~~~~~~~~~~gi~via~spl~~G~L 213 (250)
+...|. +-+.... .+....-..+.+|++++||+.+++-.+.+-.=
T Consensus 221 ig~TpM-iG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD~~ 267 (294)
T cd06543 221 IGVTPM-IGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNRDRP 267 (294)
T ss_pred cccccc-ccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccCCCC
Confidence 444331 1111111 22222235899999999999999998876543
No 54
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=70.26 E-value=67 Score=30.22 Aligned_cols=132 Identities=10% Similarity=0.106 Sum_probs=71.2
Q ss_pred hHHHHHHHhcCC----CCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHH-HHHH
Q 025575 66 NEILVGKALKGG----MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIE-VTIG 140 (250)
Q Consensus 66 sE~~lg~~l~~~----~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~-~~~~ 140 (250)
+++.+-+++++. +.+-++|.+-.. ++-|-..++...+.++.+.++++.++.|....... ..-.
T Consensus 69 ~~~~L~~aI~~~~~~~~P~~I~V~sTC~------------selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~ 136 (511)
T TIGR01278 69 SQTRLVDTVRRVDDRFKPDLIVVTPSCT------------SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADR 136 (511)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCCh------------HHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHH
Confidence 677777777654 333344444432 33444445555555655458899999887654322 1122
Q ss_pred HHHHHH--------------HcCCcceEecCcc------cHHHHHHHhhcCCceEEee-e---------------cCcC-
Q 025575 141 ELKKLV--------------EEGKIKYIGLSEA------CAATIRRAHAVHPITAVQL-E---------------WSLW- 183 (250)
Q Consensus 141 ~l~~l~--------------~~G~ir~iGvSn~------~~~~l~~~~~~~~~~~~q~-~---------------~n~~- 183 (250)
+|+.++ +.+.|.-||.++. +..+|.++++...+.++.+ + +|+.
T Consensus 137 al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l~~A~~NIv~ 216 (511)
T TIGR01278 137 TLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLARLPAAWLNICP 216 (511)
T ss_pred HHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhcccCcEEEEe
Confidence 222222 2456888898763 4456777776655555443 2 2222
Q ss_pred CcCchhhhHHHHH-HhCCeEEEeccCc
Q 025575 184 SRDVEAEIVPTCR-ELGIGIVAYGPLG 209 (250)
Q Consensus 184 ~~~~~~~~~~~~~-~~gi~via~spl~ 209 (250)
.+.....+-++++ +.|++++...|++
T Consensus 217 ~~~~g~~~A~~Le~~fGiP~i~~~PiG 243 (511)
T TIGR01278 217 YREIGLMAAEYLKEKFGQPYITTTPIG 243 (511)
T ss_pred chHHHHHHHHHHHHHhCCCcccccccC
Confidence 1111123444443 4499998777875
No 55
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=70.22 E-value=45 Score=28.37 Aligned_cols=102 Identities=21% Similarity=0.109 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEe-ecCCCC-CCHH----HHHHHHHHHHHcCCcceEecCcccHHHHHHHhhcCCc
Q 025575 100 GDPAYVRACCEASLKRLDIDCIDLYYQ-HRVDTK-IPIE----VTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPI 173 (250)
Q Consensus 100 ~~~~~i~~~l~~sL~~L~~d~iDl~~l-h~p~~~-~~~~----~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~ 173 (250)
.+.+.+.+...+.+ .-|-+.||+=.. -+|+.. .+.+ .+...++.+++.-.+- |.+-+++++.++++++.+..
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 35555555544443 458899998532 234432 1222 2334456666653443 78889999999999988643
Q ss_pred eEEeeecCcCCcCchhhhHHHHHHhCCeEEEecc
Q 025575 174 TAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGP 207 (250)
Q Consensus 174 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~sp 207 (250)
-+| ..+..... .++++.++++|..++.+..
T Consensus 99 iIN--disg~~~~--~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 99 IIN--DVSGGSDD--PAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred EEE--eCCCCCCC--hHHHHHHHHcCCCEEEECC
Confidence 232 23333221 5899999999999998543
No 56
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=70.13 E-value=86 Score=28.49 Aligned_cols=165 Identities=16% Similarity=0.176 Sum_probs=83.0
Q ss_pred ccCceeecccccCCCCCCCCChHHHHHHHHHHHHcCCCeEeCcCCcCCC----ChHHHHHHHhcCC-----CCCCEEEEe
Q 025575 16 EVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPY----TNEILVGKALKGG-----MRERVELAT 86 (250)
Q Consensus 16 ~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g----~sE~~lg~~l~~~-----~R~~~~i~t 86 (250)
.|=+++.|==+. |+.-.+..++.+++..|+..| ....|++. .+-+.+.+++.+. ..++||+++
T Consensus 62 ~iipl~~GDPsv---~~~~~ts~~a~~Av~~al~Sg-----k~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~lts 133 (447)
T KOG0259|consen 62 PILPLGHGDPSV---YPCFRTSQEAEQAVVDALRSG-----KGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTS 133 (447)
T ss_pred eeccCCCCCCCc---cccccCCHHHHHHHHHHHhcC-----CCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEec
Confidence 344455543222 333334567888888898886 34567764 4566677775442 678899877
Q ss_pred eeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCc---c--cH
Q 025575 87 KFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE---A--CA 161 (250)
Q Consensus 87 K~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn---~--~~ 161 (250)
-.. ++++-.+..|--..-.+ ++-+|. .++-++.... ..=-||++-+-. | +.
T Consensus 134 GC~-----------------qAIe~~i~~LA~p~aNI-LlPrPG--fp~Y~~~a~~----~~lEVR~ydlLPe~~weIDL 189 (447)
T KOG0259|consen 134 GCS-----------------QAIELAISSLANPGANI-LLPRPG--FPLYDTRAIY----SGLEVRYYDLLPEKDWEIDL 189 (447)
T ss_pred cch-----------------HHHHHHHHHhcCCCCce-ecCCCC--CchHHHhhhh----cCceeEeecccCcccceech
Confidence 643 23333333343222222 233332 2322222111 111234444321 2 23
Q ss_pred HHHHHHhhcCCceEEeeecCcCCc-------CchhhhHHHHHHhCCeEEEeccCccCcCC
Q 025575 162 ATIRRAHAVHPITAVQLEWSLWSR-------DVEAEIVPTCRELGIGIVAYGPLGQGFLS 214 (250)
Q Consensus 162 ~~l~~~~~~~~~~~~q~~~n~~~~-------~~~~~~~~~~~~~gi~via~spl~~G~L~ 214 (250)
+.++.+++.... ..+-.||-++ ...+++.+.|+++||-||+=...+.-.+.
T Consensus 190 ~~veal~DENT~--AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg 247 (447)
T KOG0259|consen 190 DGVEALADENTV--AIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFG 247 (447)
T ss_pred HHHHHhhccCee--EEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecC
Confidence 445555544332 2222333333 23368999999999999975555444444
No 57
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=69.63 E-value=39 Score=30.27 Aligned_cols=28 Identities=21% Similarity=0.219 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEee
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQH 127 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh 127 (250)
..+.+.+++.++..+ .|+.+++.+|.+.
T Consensus 171 gqt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 171 GESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 457778877777655 4888888888765
No 58
>PRK05414 urocanate hydratase; Provisional
Probab=68.65 E-value=17 Score=34.02 Aligned_cols=123 Identities=16% Similarity=0.080 Sum_probs=78.2
Q ss_pred HHHHHHcCCCeEe--CcCCcC--------CCChHHHHHHHhcCC---CCCCEEEEeeeCcccCCC-----------CCCC
Q 025575 44 IHHAINSGITLLD--TSDIYG--------PYTNEILVGKALKGG---MRERVELATKFGISFADG-----------GKIR 99 (250)
Q Consensus 44 l~~A~~~Gi~~~D--tA~~Yg--------~g~sE~~lg~~l~~~---~R~~~~i~tK~~~~~~~~-----------~~~~ 99 (250)
....-+.|+..+- ||..|- .|+-|.++.-+-+.. .+-++||++-++...... ....
T Consensus 118 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vE 197 (556)
T PRK05414 118 FNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLAVE 197 (556)
T ss_pred HHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceEEEEE
Confidence 4444556766442 444331 145565554443322 467788888887543211 0011
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhc---CCceEE
Q 025575 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV---HPITAV 176 (250)
Q Consensus 100 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~---~~~~~~ 176 (250)
.++ .+.-+|+.+.|+|.+- .++++.++..++.+++|+..+||+-..-++.++++++. +.+..-
T Consensus 198 vd~-------~ri~kR~~~gyld~~~-------~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtD 263 (556)
T PRK05414 198 VDE-------SRIDKRLRTGYLDEKA-------DDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTD 263 (556)
T ss_pred ECH-------HHHHHHHhCCcceeEc-------CCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCc
Confidence 233 3445678888988762 45889999999999999999999999999999998876 334444
Q ss_pred eeec
Q 025575 177 QLEW 180 (250)
Q Consensus 177 q~~~ 180 (250)
|...
T Consensus 264 QTSa 267 (556)
T PRK05414 264 QTSA 267 (556)
T ss_pred Cccc
Confidence 6644
No 59
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=68.60 E-value=28 Score=31.74 Aligned_cols=136 Identities=16% Similarity=0.137 Sum_probs=74.7
Q ss_pred HHHHHHHHHcCCCeE-eCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCc------ccCCCCCCCCCHHHHHHHHHHHH
Q 025575 41 IALIHHAINSGITLL-DTSDIYGPYTNEILVGKALKGGMRERVELATKFGI------SFADGGKIRGDPAYVRACCEASL 113 (250)
Q Consensus 41 ~~~l~~A~~~Gi~~~-DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~------~~~~~~~~~~~~~~i~~~l~~sL 113 (250)
.+=++.|++.|-..+ |-+ ..| .-..+.+.+-+. ..+=|.|=--+ ....+...+.+.+.+-..+++..
T Consensus 80 ~~K~~~A~~~GADtiMDLS-tgg---dl~~iR~~il~~--s~vpvGTVPiYqa~~~~~~k~~~~~~mt~d~~~~~ie~qa 153 (431)
T PRK13352 80 LEKAKVAVKYGADTIMDLS-TGG---DLDEIRRAIIEA--SPVPVGTVPIYQAAVEAARKYGSVVDMTEDDLFDVIEKQA 153 (431)
T ss_pred HHHHHHHHHcCCCeEeecc-CCC---CHHHHHHHHHHc--CCCCCcChhHHHHHHHHHhcCCChhhCCHHHHHHHHHHHH
Confidence 344689999998744 544 334 444444444321 11111110000 00001113677888888888777
Q ss_pred HHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhcCCceEEeeecCcCCcCchhhhHH
Q 025575 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVP 193 (250)
Q Consensus 114 ~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~ 193 (250)
+ +=+|.+-+|.- -+.+.++.++++|++ .|+-+-....+...+.... .=||+.... +++++
T Consensus 154 ~----~GVDfmTiHcG-------i~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~n~------~ENPlye~f-D~lLe 213 (431)
T PRK13352 154 K----DGVDFMTIHCG-------VTRETLERLKKSGRI--MGIVSRGGSFLAAWMLHNN------KENPLYEHF-DYLLE 213 (431)
T ss_pred H----hCCCEEEEccc-------hhHHHHHHHHhcCCc--cCeecCCHHHHHHHHHHcC------CcCchHHHH-HHHHH
Confidence 6 56899999984 357788999999865 5665555554444332211 224444332 46666
Q ss_pred HHHHhCCeE
Q 025575 194 TCRELGIGI 202 (250)
Q Consensus 194 ~~~~~gi~v 202 (250)
.|++++|.+
T Consensus 214 I~~~yDVtl 222 (431)
T PRK13352 214 ILKEYDVTL 222 (431)
T ss_pred HHHHhCeee
Confidence 666666655
No 60
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=68.53 E-value=16 Score=33.96 Aligned_cols=123 Identities=17% Similarity=0.107 Sum_probs=77.5
Q ss_pred HHHHHHcCCCeEe--CcCCcC--------CCChHHHHHHHhcCC---CCCCEEEEeeeCcccCCC-----------CCCC
Q 025575 44 IHHAINSGITLLD--TSDIYG--------PYTNEILVGKALKGG---MRERVELATKFGISFADG-----------GKIR 99 (250)
Q Consensus 44 l~~A~~~Gi~~~D--tA~~Yg--------~g~sE~~lg~~l~~~---~R~~~~i~tK~~~~~~~~-----------~~~~ 99 (250)
....-+.|+..+- ||..|- .|+-|.++.-+-+.. -+-.+||++-++...... ....
T Consensus 109 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vE 188 (545)
T TIGR01228 109 FHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSLKGKWVLTAGLGGMGGAQPLAVTMNGGVSIAVE 188 (545)
T ss_pred HHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCCceeEEEEeCCCccccccHHHHHHcCceEEEEE
Confidence 4444556766442 444331 145565554443322 456788888877542211 0011
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhc---CCceEE
Q 025575 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV---HPITAV 176 (250)
Q Consensus 100 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~---~~~~~~ 176 (250)
.++ .+.-+|+.+.|+|.+ ..++++.++..++.+++|+..+||+-..-++.++++++. +.+..-
T Consensus 189 vd~-------~ri~kR~~~gyld~~-------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtD 254 (545)
T TIGR01228 189 VDE-------SRIDKRLETKYCDEQ-------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTD 254 (545)
T ss_pred ECH-------HHHHHHHhcCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCC
Confidence 223 344567788898875 245889999999999999999999999999999998875 334444
Q ss_pred eeec
Q 025575 177 QLEW 180 (250)
Q Consensus 177 q~~~ 180 (250)
|...
T Consensus 255 QTSa 258 (545)
T TIGR01228 255 QTSA 258 (545)
T ss_pred CCcc
Confidence 6644
No 61
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=68.43 E-value=1e+02 Score=28.55 Aligned_cols=85 Identities=7% Similarity=0.060 Sum_probs=56.8
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcccHHHHHHHhhcCCceEEeeecCcCCcCchhhhHHHHHHhCCe
Q 025575 123 LYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIG 201 (250)
Q Consensus 123 l~~lh~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~ 201 (250)
+.++..|-+..+..+-++.|.+|++...|. ..|=+.++...+..+++...++++|......--....++.+.|+.+|+.
T Consensus 252 ~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~ 331 (441)
T TIGR03247 252 LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVAQMCHDWGLT 331 (441)
T ss_pred hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHHHHHHHcCCE
Confidence 445666644322112367788888776663 4466667888999988888888888876322111125899999999999
Q ss_pred EEEecc
Q 025575 202 IVAYGP 207 (250)
Q Consensus 202 via~sp 207 (250)
+..++.
T Consensus 332 v~~h~~ 337 (441)
T TIGR03247 332 WGSHSN 337 (441)
T ss_pred EEEeCC
Confidence 987654
No 62
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=68.24 E-value=61 Score=29.44 Aligned_cols=83 Identities=7% Similarity=0.007 Sum_probs=60.1
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcccHHHHHHHhhcCCceEEeeecCcCCc-CchhhhHHHHHHh
Q 025575 121 IDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCREL 198 (250)
Q Consensus 121 iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~ 198 (250)
.++.++..|-+. +.++.+.+|++.-.+. ..|=|-++...+..+++...++++|+...-.-. ..-.++.+.|+.+
T Consensus 232 ~~l~~iEeP~~~----~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~ 307 (404)
T PRK15072 232 YRLFWLEDPTPA----ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALY 307 (404)
T ss_pred cCCcEEECCCCc----cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHc
Confidence 466666666432 2367788888876665 666777899999999988888999987665422 1125899999999
Q ss_pred CCeEEEecc
Q 025575 199 GIGIVAYGP 207 (250)
Q Consensus 199 gi~via~sp 207 (250)
|+.++..+.
T Consensus 308 gi~~~~h~~ 316 (404)
T PRK15072 308 QVRTGSHGP 316 (404)
T ss_pred CCceeeccC
Confidence 999987644
No 63
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=68.19 E-value=37 Score=30.23 Aligned_cols=68 Identities=10% Similarity=0.075 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCCcc-eEecCcccHHHHHHHhhcCCceEEeeecCcCCc-CchhhhHHHHHHhCCeEEEe
Q 025575 138 TIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAY 205 (250)
Q Consensus 138 ~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~ 205 (250)
.++.+.+|.++..+. ..|=|-++...+.++++...++++|+...-.-. ....++...|+++|+.++..
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~ 296 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGG 296 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeec
Confidence 467778888876664 556666788899998888778888887654422 11258999999999999854
No 64
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=67.35 E-value=39 Score=30.59 Aligned_cols=61 Identities=13% Similarity=0.083 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEee-cCCCC-----------CC-HH---HHH-HHHHHHHHcCCcceEecCcccH
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQH-RVDTK-----------IP-IE---VTI-GELKKLVEEGKIKYIGLSEACA 161 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh-~p~~~-----------~~-~~---~~~-~~l~~l~~~G~ir~iGvSn~~~ 161 (250)
..+.+.+++.++..++ |+.++|.+|.+. .|... .+ .+ +.+ .+.+.|.+.|..+ +++|||..
T Consensus 173 gqt~e~~~~~l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~-yeis~fa~ 250 (390)
T PRK06582 173 GQTLKDWQEELKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFR-YEISNYAK 250 (390)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCce-eeceeeeC
Confidence 5578889999998886 899999999775 33210 01 11 122 3445566677654 78888863
No 65
>PLN02363 phosphoribosylanthranilate isomerase
Probab=67.15 E-value=21 Score=30.41 Aligned_cols=73 Identities=22% Similarity=0.267 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecC-cccHHHHHHHhhcCCceEEeee
Q 025575 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLE 179 (250)
Q Consensus 101 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~q~~ 179 (250)
+++.++.+. ++|.|++=+++.....+....+ ....+.+......++.+||. |-+++.+.++++...++++|+.
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs~e-~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLH 129 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPKSKRSISLS-VAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLH 129 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCCCCCcCCHH-HHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 455554433 4899999887543322333343 33333333333246789986 7789999999888889999985
No 66
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=67.11 E-value=74 Score=26.93 Aligned_cols=104 Identities=19% Similarity=0.113 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEE-eecCCCC-CC----HHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhcCCc
Q 025575 100 GDPAYVRACCEASLKRLDIDCIDLYY-QHRVDTK-IP----IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPI 173 (250)
Q Consensus 100 ~~~~~i~~~l~~sL~~L~~d~iDl~~-lh~p~~~-~~----~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~ 173 (250)
.+.+.+.+..++.+ .-|.|.||+=. --+|+.. .+ .+.....++.+++.-.+ -|.+-+++++.++++++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 35666666655554 46889999863 2344321 11 23355666666655333 388889999999999988643
Q ss_pred eEEeeecCcCCcCchhhhHHHHHHhCCeEEEeccCc
Q 025575 174 TAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLG 209 (250)
Q Consensus 174 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~ 209 (250)
-+ +..+..... .++++.++++|..++....-.
T Consensus 99 iI--Ndis~~~~~--~~~~~l~~~~~~~vV~m~~~~ 130 (258)
T cd00423 99 II--NDVSGGRGD--PEMAPLAAEYGAPVVLMHMDG 130 (258)
T ss_pred EE--EeCCCCCCC--hHHHHHHHHcCCCEEEECcCC
Confidence 22 222333211 579999999999999876443
No 67
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=66.87 E-value=36 Score=30.40 Aligned_cols=71 Identities=13% Similarity=0.020 Sum_probs=51.8
Q ss_pred HHHHHHHHHHcCCcc-eEecCcccHHHHHHHhhcCCceEEeeecCcCCc-CchhhhHHHHHHhCCeEEEeccC
Q 025575 138 TIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAYGPL 208 (250)
Q Consensus 138 ~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~spl 208 (250)
.++.+.+|++...+. ..|=|-++...+.++++...++++|+...-.-. ....++...|+.+|+.++..+.+
T Consensus 226 d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~ 298 (368)
T TIGR02534 226 NREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTML 298 (368)
T ss_pred cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecch
Confidence 366777787776664 667777888888888888778888887665322 11248999999999999875433
No 68
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=66.78 E-value=37 Score=32.78 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=46.2
Q ss_pred HHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecC-cccHHHHHHHhhcCCceEEeeec
Q 025575 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEW 180 (250)
Q Consensus 114 ~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~q~~~ 180 (250)
..+|.|++=+++.....+....+.....+.+......++.+||- |-+++.+.++.+...++++|+.-
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG 87 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHG 87 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 44899999988655444444555423333333333457889996 77899999998888899999854
No 69
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=66.45 E-value=39 Score=31.00 Aligned_cols=60 Identities=12% Similarity=-0.084 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCC--------HH---HHH-HHHHHHHHcCCcceEecCcccH
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP--------IE---VTI-GELKKLVEEGKIKYIGLSEACA 161 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~--------~~---~~~-~~l~~l~~~G~ir~iGvSn~~~ 161 (250)
..+.+.+.+.++..+ +|+.++|.++.+.-. +.++ .+ +.+ .+.+.|.+.|. +.+++|||..
T Consensus 204 ~qt~e~~~~~l~~~~-~l~~~~is~y~L~~~-~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~far 275 (430)
T PRK08208 204 GQTHASWMESLDQAL-VYRPEELFLYPLYVR-PLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFRR 275 (430)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEcccccc-CCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecceec
Confidence 457888888888776 489999998876532 1111 11 222 45566677776 5589999864
No 70
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=66.05 E-value=87 Score=27.01 Aligned_cols=153 Identities=13% Similarity=0.104 Sum_probs=89.3
Q ss_pred ChHHHHHHHHHHHHcC-CCeEeC---cCC-----cCCCChHHHHHHHhcCCC-CCCEEEEeeeCcccCCCCCCCCCHHHH
Q 025575 36 PEPDMIALIHHAINSG-ITLLDT---SDI-----YGPYTNEILVGKALKGGM-RERVELATKFGISFADGGKIRGDPAYV 105 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~G-i~~~Dt---A~~-----Yg~g~sE~~lg~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~i 105 (250)
+.++..+..+.+.+.| +..||- +++ +..+.+.+.+-+.++... .-++-|..|+.+.. +.+
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~----------~~~ 171 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV----------TDI 171 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc----------hhH
Confidence 4677788888888888 898875 111 112235566666666542 22677888987431 222
Q ss_pred HHHHHHHHHHcCCCcccEEE-eecC--CCC-------------C-C--HHHHHHHHHHHHHcCCcceEecCcc-cHHHHH
Q 025575 106 RACCEASLKRLDIDCIDLYY-QHRV--DTK-------------I-P--IEVTIGELKKLVEEGKIKYIGLSEA-CAATIR 165 (250)
Q Consensus 106 ~~~l~~sL~~L~~d~iDl~~-lh~p--~~~-------------~-~--~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~ 165 (250)
..+-+.|+..|+|.|++.= ++.. +.. . + ..-.++.+.++++.=.+--||+... +++.+.
T Consensus 172 -~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~ 250 (301)
T PRK07259 172 -VEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDAI 250 (301)
T ss_pred -HHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHHH
Confidence 2344557778877776531 0110 000 0 0 0124667777777656888999886 788888
Q ss_pred HHhhcCCceEEeeecCcCC-cC----chhhhHHHHHHhCC
Q 025575 166 RAHAVHPITAVQLEWSLWS-RD----VEAEIVPTCRELGI 200 (250)
Q Consensus 166 ~~~~~~~~~~~q~~~n~~~-~~----~~~~~~~~~~~~gi 200 (250)
+++... .+.+|+-=-++. +. ...++-.++.++|.
T Consensus 251 ~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 251 EFIMAG-ASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHcC-CCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 888765 577776222222 11 12466677777775
No 71
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=65.73 E-value=98 Score=27.45 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=70.7
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCcCCcCC----------------C--ChHHHHHHHhcCCCCCCEEEEeeeCcccCCCC
Q 025575 35 EPEPDMIALIHHAINSGITLLDTSDIYGP----------------Y--TNEILVGKALKGGMRERVELATKFGISFADGG 96 (250)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~----------------g--~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~ 96 (250)
.+.+...++.+.|-+.|+-++=|--.+.. | ....++-...+ ..+.+.++|-..
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGma------- 157 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGMA------- 157 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEcccc-------
Confidence 35677789999999999998877554431 0 11222222222 234666666543
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCC-CCCHHHH-HHHHHHHHHcCCcceEecCcccHHHHHHH
Q 025575 97 KIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT-KIPIEVT-IGELKKLVEEGKIKYIGLSEACAATIRRA 167 (250)
Q Consensus 97 ~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-~~~~~~~-~~~l~~l~~~G~ir~iGvSn~~~~~l~~~ 167 (250)
+-+.+.++++..+++=. .|+.++|+... ..+.+++ +.+|..|.+.= ---||+|.|+...+..+
T Consensus 158 ----~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l 222 (347)
T COG2089 158 ----TIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPL 222 (347)
T ss_pred ----cHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHH
Confidence 45677777776655443 39999998743 2344442 45555555443 34699999988755443
No 72
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=65.42 E-value=77 Score=27.99 Aligned_cols=93 Identities=15% Similarity=0.187 Sum_probs=53.4
Q ss_pred HHHHHcCCCcccEEEeec-CCC-CCCHHHHHHHHHHHHHcCCcce-EecCcc---cHHHHHHHhhcC---CceEEeeecC
Q 025575 111 ASLKRLDIDCIDLYYQHR-VDT-KIPIEVTIGELKKLVEEGKIKY-IGLSEA---CAATIRRAHAVH---PITAVQLEWS 181 (250)
Q Consensus 111 ~sL~~L~~d~iDl~~lh~-p~~-~~~~~~~~~~l~~l~~~G~ir~-iGvSn~---~~~~l~~~~~~~---~~~~~q~~~n 181 (250)
+.-+.+|.|+|||-+.-. |+. +...++....++...+.=.+-- |..|.. +++.++++++.. ++-++-+
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSa--- 159 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSA--- 159 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEEC---
Confidence 344578888888875433 221 2233444455555544433333 665533 678888877652 2322222
Q ss_pred cCCcCchhhhHHHHHHhCCeEEEeccC
Q 025575 182 LWSRDVEAEIVPTCRELGIGIVAYGPL 208 (250)
Q Consensus 182 ~~~~~~~~~~~~~~~~~gi~via~spl 208 (250)
.....+.+.+.|+++|..|++.+|.
T Consensus 160 --t~en~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 160 --EEDNYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred --CHHHHHHHHHHHHHhCCeEEEEcHH
Confidence 2211358999999999999988854
No 73
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=65.31 E-value=18 Score=27.42 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=20.7
Q ss_pred CchhhhHHHHHHhCCeEEEeccCc
Q 025575 186 DVEAEIVPTCRELGIGIVAYGPLG 209 (250)
Q Consensus 186 ~~~~~~~~~~~~~gi~via~spl~ 209 (250)
....++++.|+++||.|++|-.+.
T Consensus 44 Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 44 DLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CHHHHHHHHHHHCCCEEEEEEeee
Confidence 334699999999999999998876
No 74
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=65.09 E-value=97 Score=27.19 Aligned_cols=127 Identities=14% Similarity=0.072 Sum_probs=67.9
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHH----H---HhcCCC-CCCEEEEeeeCcccCCCCCCCCCHHHHH
Q 025575 35 EPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVG----K---ALKGGM-RERVELATKFGISFADGGKIRGDPAYVR 106 (250)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg----~---~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~i~ 106 (250)
.+.++...+++.+.+.|+..|--+ | | |.++- + .+++.. ..++-|+|-.. .+.
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~t---G-G--EPllr~dl~~li~~i~~~~~l~~i~itTNG~--------------ll~ 104 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLT---G-G--EPLVRRGCDQLVARLGKLPGLEELSLTTNGS--------------RLA 104 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---C-c--CCCccccHHHHHHHHHhCCCCceEEEEeChh--------------HHH
Confidence 467888999999999999877532 3 2 32222 2 222211 12444544421 122
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCCC--------CCHHHHHHHHHHHHHcCC--c--ceEecCcccHHHHHHHhhc---C
Q 025575 107 ACCEASLKRLDIDCIDLYYQHRVDTK--------IPIEVTIGELKKLVEEGK--I--KYIGLSEACAATIRRAHAV---H 171 (250)
Q Consensus 107 ~~l~~sL~~L~~d~iDl~~lh~p~~~--------~~~~~~~~~l~~l~~~G~--i--r~iGvSn~~~~~l~~~~~~---~ 171 (250)
+ .-+.|...|++++- +-|+.+++. ..++.+++.++.+++.|. | ..+.+...+.+++.++++. .
T Consensus 105 ~-~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~ 182 (329)
T PRK13361 105 R-FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRER 182 (329)
T ss_pred H-HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhc
Confidence 2 33445566766654 344544321 246788999999988875 2 2333444555666555443 3
Q ss_pred CceEEeeecCcC
Q 025575 172 PITAVQLEWSLW 183 (250)
Q Consensus 172 ~~~~~q~~~n~~ 183 (250)
.+++.-+++-|+
T Consensus 183 gi~~~~ie~mP~ 194 (329)
T PRK13361 183 GLDIAFIEEMPL 194 (329)
T ss_pred CCeEEEEecccC
Confidence 344444444443
No 75
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=65.06 E-value=1e+02 Score=27.46 Aligned_cols=146 Identities=11% Similarity=0.067 Sum_probs=89.6
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~ 115 (250)
+.++..+.+..+++.|++.|=.-- .+. =+++++.-.+++.|..-.. ..++.+.. .+.++.
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiKv-------~~~-v~avre~~G~~~~l~vDaN--------~~w~~~~A----~~~~~~ 185 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQL-------PKL-FEAVREKFGFEFHLLHDVH--------HRLTPNQA----ARFGKD 185 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeCH-------HHH-HHHHHhccCCCceEEEECC--------CCCCHHHH----HHHHHH
Confidence 345566677777888988764311 122 2334433223444433222 13455443 223333
Q ss_pred cCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcccHHHHHHHhhcCCceEEeeecCcCCc-CchhhhHH
Q 025575 116 LDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVP 193 (250)
Q Consensus 116 L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~ 193 (250)
|. .+++.++..|-+. +-++.+.+|++...+. ..|=|-++...+..+++...++++|+...-.-. ..-.++.+
T Consensus 186 l~--~~~l~~iEeP~~~----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~ 259 (361)
T cd03322 186 VE--PYRLFWMEDPTPA----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIAD 259 (361)
T ss_pred hh--hcCCCEEECCCCc----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHH
Confidence 42 3466777776432 3367788888887775 667777889999999888888999987664332 11248999
Q ss_pred HHHHhCCeEEEecc
Q 025575 194 TCRELGIGIVAYGP 207 (250)
Q Consensus 194 ~~~~~gi~via~sp 207 (250)
.|+++|+.+...+.
T Consensus 260 ~A~~~gi~~~~h~~ 273 (361)
T cd03322 260 LASLYGVRTGWHGP 273 (361)
T ss_pred HHHHcCCeeeccCC
Confidence 99999999986543
No 76
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=64.85 E-value=55 Score=29.24 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEee
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQH 127 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh 127 (250)
..+.+.+++.++..+ .|+.+++.+|.+.
T Consensus 162 gqt~e~~~~~l~~~~-~l~~~~is~y~l~ 189 (374)
T PRK05799 162 NQTLEDWKETLEKVV-ELNPEHISCYSLI 189 (374)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEeccE
Confidence 446777777777665 4788888887654
No 77
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=64.72 E-value=34 Score=30.63 Aligned_cols=91 Identities=13% Similarity=0.229 Sum_probs=57.9
Q ss_pred EEeecCCCC-----------CCHHHHHHHHHHHHH-cCC---cceEecCc--ccHHHHHHHh---hcCCceEEeeecCcC
Q 025575 124 YYQHRVDTK-----------IPIEVTIGELKKLVE-EGK---IKYIGLSE--ACAATIRRAH---AVHPITAVQLEWSLW 183 (250)
Q Consensus 124 ~~lh~p~~~-----------~~~~~~~~~l~~l~~-~G~---ir~iGvSn--~~~~~l~~~~---~~~~~~~~q~~~n~~ 183 (250)
+-||.+++. .+++++++++.++.+ .|. |+++=+.+ -+.+++.++. ...++.++-++||++
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~ 298 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPF 298 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccC
Confidence 668988642 246788888877654 342 34444433 3456655554 334567888999986
Q ss_pred CcC----ch----hhhHHHHHHhCCeEEEeccCc------cCcCC
Q 025575 184 SRD----VE----AEIVPTCRELGIGIVAYGPLG------QGFLS 214 (250)
Q Consensus 184 ~~~----~~----~~~~~~~~~~gi~via~spl~------~G~L~ 214 (250)
... +. ....+..+++|+.|......+ +|.|.
T Consensus 299 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~di~aaCGqL~ 343 (355)
T TIGR00048 299 PEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGDDIDAACGQLR 343 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcchhhcCCcch
Confidence 531 11 245667778999999888774 66776
No 78
>smart00642 Aamy Alpha-amylase domain.
Probab=64.67 E-value=9.7 Score=30.09 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=17.2
Q ss_pred hhhHHHHHHhCCeEEEeccCc
Q 025575 189 AEIVPTCRELGIGIVAYGPLG 209 (250)
Q Consensus 189 ~~~~~~~~~~gi~via~spl~ 209 (250)
..+++.|+++||.|+.=-++.
T Consensus 73 ~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 73 KELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHCCCEEEEEECCC
Confidence 589999999999999655443
No 79
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=64.48 E-value=48 Score=27.94 Aligned_cols=168 Identities=13% Similarity=0.003 Sum_probs=80.5
Q ss_pred CceeecccccCCCCCCCCChHHHHHHHHHHHH-cCCCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCcccCCCC
Q 025575 18 SAQGLGCMAMSCLYGPPEPEPDMIALIHHAIN-SGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGG 96 (250)
Q Consensus 18 s~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~ 96 (250)
|+|-+||..+. + .+++..|++ .|-..+=.|----+-.....-...+.-.+++.+.+.--..
T Consensus 9 SRL~lGTgky~-------s----~~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i~~~~~~lLPNTa------- 70 (247)
T PF05690_consen 9 SRLILGTGKYP-------S----PEVMREAIEASGAEVVTVALRRVNLGSKPGGDNILDYIDRSGYTLLPNTA------- 70 (247)
T ss_dssp -SEEEE-STSS-------S----HHHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCTTCCTSEEEEE-T-------
T ss_pred cceEEecCCCC-------C----HHHHHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHhcccCCEECCcCC-------
Confidence 79999997762 2 345555554 3655554432111100100001122222556665543322
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCC-CHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhcCCceE
Q 025575 97 KIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITA 175 (250)
Q Consensus 97 ~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~-~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~ 175 (250)
...+.+...+-.+-..+.++++.|-|=.+..+..-. +..+++++-+.|+++|-+- +=.++-++-..+++.+.+ ...
T Consensus 71 -Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~akrL~d~G-caa 147 (247)
T PF05690_consen 71 -GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEDAG-CAA 147 (247)
T ss_dssp -T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EE-EEEE-S-HHHHHHHHHTT--SE
T ss_pred -CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEE-eecCCCCHHHHHHHHHCC-CCE
Confidence 245778888888889999999888877666554432 4569999999999999753 222333443344444432 122
Q ss_pred EeeecCcCCcC--c--hhhhHHHHHHhCCeEEEec
Q 025575 176 VQLEWSLWSRD--V--EAEIVPTCRELGIGIVAYG 206 (250)
Q Consensus 176 ~q~~~n~~~~~--~--~~~~~~~~~~~gi~via~s 206 (250)
++--=+|+-.. . ...+-..+++.+|+||.=.
T Consensus 148 vMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDA 182 (247)
T PF05690_consen 148 VMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDA 182 (247)
T ss_dssp BEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES
T ss_pred EEecccccccCcCCCCHHHHHHHHHhcCCcEEEeC
Confidence 22222222110 0 0234444556688888644
No 80
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=63.77 E-value=39 Score=31.24 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEe-ecCC----------CCC-CHHH---HH-HHHHHHHHcCCcceEecCcccH
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQ-HRVD----------TKI-PIEV---TI-GELKKLVEEGKIKYIGLSEACA 161 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~l-h~p~----------~~~-~~~~---~~-~~l~~l~~~G~ir~iGvSn~~~ 161 (250)
..+.+.+.+.++..++ |+.++|.+|.+ +.|. ... +.++ .+ .+.+.|.+.|. ..++++||..
T Consensus 214 gqt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 214 KQTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 4578888888886655 89999999866 2221 001 1222 22 34455566675 5699999864
No 81
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=63.71 E-value=58 Score=26.87 Aligned_cols=119 Identities=12% Similarity=0.093 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCc-CCcCCCChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTS-DIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA-~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~ 114 (250)
+.++..++++.-.+.||..|++. +..+. ...+.+.+..+..+...+ .+-.. ...+.++..++.. .
T Consensus 12 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~~~~--~~~~~----------~~~~~i~~~~~~~-~ 77 (237)
T PF00682_consen 12 STEEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPNARL--QALCR----------ANEEDIERAVEAA-K 77 (237)
T ss_dssp -HHHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHSSEE--EEEEE----------SCHHHHHHHHHHH-H
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhccccc--ceeee----------ehHHHHHHHHHhh-H
Confidence 56788888888889999999999 33331 122334443333233222 22221 2355666666544 4
Q ss_pred HcCCCcccEEEeecCC-----CCCC----HHHHHHHHHHHHHcCCcceEecC---cccHHHHHHHh
Q 025575 115 RLDIDCIDLYYQHRVD-----TKIP----IEVTIGELKKLVEEGKIKYIGLS---EACAATIRRAH 168 (250)
Q Consensus 115 ~L~~d~iDl~~lh~p~-----~~~~----~~~~~~~l~~l~~~G~ir~iGvS---n~~~~~l~~~~ 168 (250)
..|.+.+.++.--++. .... ++.+.+.++.+++.|....+++- .++++.+.++.
T Consensus 78 ~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~ 143 (237)
T PF00682_consen 78 EAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELA 143 (237)
T ss_dssp HTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHH
T ss_pred hccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHH
Confidence 5677766665322210 0011 33445666666777877777764 34555554443
No 82
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=63.02 E-value=11 Score=27.31 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=38.1
Q ss_pred CcccHHHHHHHhhcCCceEEeeecCcCCc-CchhhhHHHHHHhCCeEEEecc
Q 025575 157 SEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAYGP 207 (250)
Q Consensus 157 Sn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~sp 207 (250)
|.++...+.++++...++++|+...-.-. ..-..+.+.|+++|+.+...+.
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 45678888888888888999987554321 1125899999999999998886
No 83
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=62.85 E-value=1.1e+02 Score=27.44 Aligned_cols=93 Identities=13% Similarity=0.173 Sum_probs=60.4
Q ss_pred EEeecCCCC-----------CCHHHHHHHHHHHHHcC--C--cceEecC--cccHHHHHHHhhc---CCceEEeeecCcC
Q 025575 124 YYQHRVDTK-----------IPIEVTIGELKKLVEEG--K--IKYIGLS--EACAATIRRAHAV---HPITAVQLEWSLW 183 (250)
Q Consensus 124 ~~lh~p~~~-----------~~~~~~~~~l~~l~~~G--~--ir~iGvS--n~~~~~l~~~~~~---~~~~~~q~~~n~~ 183 (250)
+-+|.+++. .+++++++++.+..+.+ + ++++=+. |-+.+++.++.+. .+..++-++||+.
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~ 290 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEH 290 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCC
Confidence 558887542 24567788887776654 2 2445444 4455666665543 4567888999987
Q ss_pred CcC----ch----hhhHHHHHHhCCeEEEeccCc------cCcCCCCC
Q 025575 184 SRD----VE----AEIVPTCRELGIGIVAYGPLG------QGFLSSGP 217 (250)
Q Consensus 184 ~~~----~~----~~~~~~~~~~gi~via~spl~------~G~L~~g~ 217 (250)
... +. ....+.++++||.+....+.+ +|.|. .+
T Consensus 291 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di~aaCGqL~-~~ 337 (349)
T PRK14463 291 EGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGSDISAACGQLK-GK 337 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcchhhccCccc-cc
Confidence 431 11 356677888999999988774 77887 44
No 84
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=62.74 E-value=54 Score=29.62 Aligned_cols=87 Identities=11% Similarity=0.087 Sum_probs=57.7
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHHH-cCC---cceEecC--cccHHHHHH---HhhcC---CceEEeee
Q 025575 123 LYYQHRVDTK-----------IPIEVTIGELKKLVE-EGK---IKYIGLS--EACAATIRR---AHAVH---PITAVQLE 179 (250)
Q Consensus 123 l~~lh~p~~~-----------~~~~~~~~~l~~l~~-~G~---ir~iGvS--n~~~~~l~~---~~~~~---~~~~~q~~ 179 (250)
.+-||.+++. .+++++++++.++.+ .|+ |+++=+. |-+.+++.+ ++... +..++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 3668988653 357888999888764 454 4555555 334444444 44434 56789999
Q ss_pred cCcCCcC-----ch---hhhHHHHHHhCCeEEEeccCc
Q 025575 180 WSLWSRD-----VE---AEIVPTCRELGIGIVAYGPLG 209 (250)
Q Consensus 180 ~n~~~~~-----~~---~~~~~~~~~~gi~via~spl~ 209 (250)
||+.... .. ....+..+++||.+....+.+
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G 358 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRG 358 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCC
Confidence 9996431 11 357778889999999988775
No 85
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=62.60 E-value=59 Score=29.12 Aligned_cols=61 Identities=13% Similarity=0.045 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEee-cCCCC-----------CC-HH---H-HHHHHHHHHHcCCcceEecCcccH
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQH-RVDTK-----------IP-IE---V-TIGELKKLVEEGKIKYIGLSEACA 161 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh-~p~~~-----------~~-~~---~-~~~~l~~l~~~G~ir~iGvSn~~~ 161 (250)
..+.+.+++.++.. .+|+++.+.++.+. .|... .+ .+ + .-.+++.|.+.|.. .+++|||..
T Consensus 163 gqt~~~~~~~l~~~-~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~-~~~~~~fa~ 240 (377)
T PRK08599 163 GQTIEDFKESLAKA-LALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFH-QYEISNFAK 240 (377)
T ss_pred CCCHHHHHHHHHHH-HccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-EeeeeeeeC
Confidence 45777887777664 55888888887543 22110 01 11 1 22466667777764 688888863
No 86
>COG0218 Predicted GTPase [General function prediction only]
Probab=62.18 E-value=87 Score=25.66 Aligned_cols=101 Identities=12% Similarity=-0.066 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHc------CCCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHH
Q 025575 37 EPDMIALIHHAINS------GITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCE 110 (250)
Q Consensus 37 ~~~~~~~l~~A~~~------Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~ 110 (250)
.+...+++...++. .+-.+|.-..--. .+..+=+++......=+++.||... .......+.+.
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~--~D~em~~~l~~~~i~~~vv~tK~DK---------i~~~~~~k~l~ 158 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPKD--LDREMIEFLLELGIPVIVVLTKADK---------LKKSERNKQLN 158 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCCcH--HHHHHHHHHHHcCCCeEEEEEcccc---------CChhHHHHHHH
Confidence 34566677666643 4557886654443 6778888888878888999999864 35566778888
Q ss_pred HHHHHcCCCcccE--EEeecCCCCCCHHHHHHHHHHHHHc
Q 025575 111 ASLKRLDIDCIDL--YYQHRVDTKIPIEVTIGELKKLVEE 148 (250)
Q Consensus 111 ~sL~~L~~d~iDl--~~lh~p~~~~~~~~~~~~l~~l~~~ 148 (250)
...+.|+.+..|- +++........+++++..+.+....
T Consensus 159 ~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 159 KVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 9999998877776 5555555555688888888776553
No 87
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=61.76 E-value=78 Score=28.52 Aligned_cols=84 Identities=18% Similarity=0.058 Sum_probs=57.9
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHc------CCcceEecCcccHHHHHHHhhcCCceEEeeecCcCCcC-chhhhHHHH
Q 025575 123 LYYQHRVDTKIPIEVTIGELKKLVEE------GKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEIVPTC 195 (250)
Q Consensus 123 l~~lh~p~~~~~~~~~~~~l~~l~~~------G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~ 195 (250)
++++..|-+..+.++-++.+.++.+. +.=-..|=|.++.+.+.++++....+++|+..+-.-.- .-.++.+.|
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA 308 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYC 308 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHH
Confidence 35666664433322346777777766 22235566678899999998888889999887754321 125899999
Q ss_pred HHhCCeEEEec
Q 025575 196 RELGIGIVAYG 206 (250)
Q Consensus 196 ~~~gi~via~s 206 (250)
+.+||.++..+
T Consensus 309 ~a~Gi~~~~h~ 319 (369)
T cd03314 309 KEHGVGAYLGG 319 (369)
T ss_pred HHcCCcEEEeC
Confidence 99999999754
No 88
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=61.36 E-value=1.4e+02 Score=28.09 Aligned_cols=89 Identities=16% Similarity=0.225 Sum_probs=49.9
Q ss_pred ccEEEeecCCCCCCHH-HHHHHHHHHH------------------HcCCcceEecCc------ccHHHHHHHhhcCCceE
Q 025575 121 IDLYYQHRVDTKIPIE-VTIGELKKLV------------------EEGKIKYIGLSE------ACAATIRRAHAVHPITA 175 (250)
Q Consensus 121 iDl~~lh~p~~~~~~~-~~~~~l~~l~------------------~~G~ir~iGvSn------~~~~~l~~~~~~~~~~~ 175 (250)
++++.+|.|....... ..-.+++.++ ..++|.-||.++ .+..+|.++++...+.+
T Consensus 117 ~pVi~v~t~~f~g~~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~v 196 (513)
T CHL00076 117 SDVILADVNHYRVNELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEI 196 (513)
T ss_pred CCEEEeCCCCCcccHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeE
Confidence 6899999986653221 1112233332 235688888774 24566777777655555
Q ss_pred Eee----------------ecCcCC-cCchhhhHHHHH-HhCCeEEEeccCc
Q 025575 176 VQL----------------EWSLWS-RDVEAEIVPTCR-ELGIGIVAYGPLG 209 (250)
Q Consensus 176 ~q~----------------~~n~~~-~~~~~~~~~~~~-~~gi~via~spl~ 209 (250)
+.+ .+|+.. +.....+-++++ +.|++.+...|++
T Consensus 197 n~v~~~g~sl~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 197 NQIIPEGGSVEDLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred EEEECCCCCHHHHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 422 223322 221234555555 4699998878875
No 89
>PRK07328 histidinol-phosphatase; Provisional
Probab=60.97 E-value=1e+02 Score=26.12 Aligned_cols=106 Identities=12% Similarity=0.050 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCcCC------------CChHHHHHHHhcCC-------CCCCEEEEeeeCcccCCCCCC
Q 025575 38 PDMIALIHHAINSGITLLDTSDIYGP------------YTNEILVGKALKGG-------MRERVELATKFGISFADGGKI 98 (250)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~------------g~sE~~lg~~l~~~-------~R~~~~i~tK~~~~~~~~~~~ 98 (250)
....++++.|++.|+..+=.+++.-. +.+..-+-..++.. .+=+|.+..-+...
T Consensus 18 ~~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~~~------- 90 (269)
T PRK07328 18 GTPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEADYH------- 90 (269)
T ss_pred CCHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEeccc-------
Confidence 34789999999999997766555321 01112222232221 11234444443322
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC-------------CCHHHHH----HHHHHHHHcCCcceEe
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-------------IPIEVTI----GELKKLVEEGKIKYIG 155 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~-------------~~~~~~~----~~l~~l~~~G~ir~iG 155 (250)
+ .....+++.|+.-..||+ +.-+|+.+.. .+.++.+ +.+.++.+.|.+.-||
T Consensus 91 ---~-~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlg 159 (269)
T PRK07328 91 ---P-GTEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIG 159 (269)
T ss_pred ---C-CcHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEee
Confidence 1 123445666777666666 6677986421 1222333 3577778888887776
No 90
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=60.34 E-value=1.2e+02 Score=26.75 Aligned_cols=148 Identities=18% Similarity=0.126 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcC
Q 025575 38 PDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD 117 (250)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~ 117 (250)
++..+.+..+.+.|++.|=.-- +.....+.+ +++++.-. ++-|.-=.. ..++.+... .+++|
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d~~~l-~~vr~~~g-~~~l~lDaN--------~~~~~~~a~-----~~~~l- 200 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWDVEPL-KAVRERFP-DIPLMADAN--------SAYTLADIP-----LLKRL- 200 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHHHHHH-HHHHHHCC-CCeEEEECC--------CCCCHHHHH-----HHHHh-
Confidence 5667777888899998763321 221123333 34443211 332322211 134554432 23444
Q ss_pred CCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCc-ceEecCcccHHHHHHHhhcCCceEEeeecCcCCc-CchhhhHHHH
Q 025575 118 IDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI-KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTC 195 (250)
Q Consensus 118 ~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i-r~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~ 195 (250)
+..++.++..|-+. +-++.+.++++.-.+ -..|=|-++...+..+++...++++|+..+-.-. ....++...|
T Consensus 201 -~~~~i~~iEeP~~~----~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A 275 (354)
T cd03317 201 -DEYGLLMIEQPLAA----DDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLC 275 (354)
T ss_pred -hcCCccEEECCCCh----hHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHH
Confidence 23466667766432 346677777766543 3566777899999999988888899987654432 1125899999
Q ss_pred HHhCCeEEEeccC
Q 025575 196 RELGIGIVAYGPL 208 (250)
Q Consensus 196 ~~~gi~via~spl 208 (250)
+.+|+.++..+..
T Consensus 276 ~~~gi~~~~g~~~ 288 (354)
T cd03317 276 QEHGIPVWCGGML 288 (354)
T ss_pred HHcCCcEEecCcc
Confidence 9999999865443
No 91
>PRK12928 lipoyl synthase; Provisional
Probab=60.13 E-value=1e+02 Score=26.75 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHHcC---Ccc---eEecCcccHHHHHHHhhc---CCceEEee-ecCc-------CCc----Cchhhh
Q 025575 133 IPIEVTIGELKKLVEEG---KIK---YIGLSEACAATIRRAHAV---HPITAVQL-EWSL-------WSR----DVEAEI 191 (250)
Q Consensus 133 ~~~~~~~~~l~~l~~~G---~ir---~iGvSn~~~~~l~~~~~~---~~~~~~q~-~~n~-------~~~----~~~~~~ 191 (250)
...++.++.++.+++.| .++ -+|+ .-+.+++.+.+.. ..++.+.+ +|.. ..+ ...+.+
T Consensus 185 ~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~ 263 (290)
T PRK12928 185 ADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEAL 263 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHH
Confidence 45678889999999988 333 3477 6676666554433 44444433 4422 111 122578
Q ss_pred HHHHHHhCCeEEEeccCcc
Q 025575 192 VPTCRELGIGIVAYGPLGQ 210 (250)
Q Consensus 192 ~~~~~~~gi~via~spl~~ 210 (250)
-+.+.+.|...++.+||..
T Consensus 264 ~~~~~~~g~~~~~~~p~~r 282 (290)
T PRK12928 264 GQIARELGFSHVRSGPLVR 282 (290)
T ss_pred HHHHHHcCCceeEecCccc
Confidence 8888899999999999864
No 92
>PRK09061 D-glutamate deacylase; Validated
Probab=60.12 E-value=1e+02 Score=28.94 Aligned_cols=113 Identities=13% Similarity=0.060 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCC
Q 025575 39 DMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDI 118 (250)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~ 118 (250)
+..++++.|++.|+..|=+...|-++.+...+-+.++...+-+..|........ ..++.....++++.++....
T Consensus 170 ~m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~------~~~~~~e~~av~~~i~lA~~ 243 (509)
T PRK09061 170 EILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLS------NVDPRSSVDAYQELIAAAAE 243 (509)
T ss_pred HHHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcc------cCCchhHHHHHHHHHHHHHH
Confidence 367788889999999998766675555666666666655555666666554220 01122223334444433321
Q ss_pred CcccEEEeecCCC-CCCHHHHHHHHHHHHHcCCcceEecC
Q 025575 119 DCIDLYYQHRVDT-KIPIEVTIGELKKLVEEGKIKYIGLS 157 (250)
Q Consensus 119 d~iDl~~lh~p~~-~~~~~~~~~~l~~l~~~G~ir~iGvS 157 (250)
.-.-+.+.|-... ..+..+.++.+++++++|.--..-++
T Consensus 244 ~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~ 283 (509)
T PRK09061 244 TGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAY 283 (509)
T ss_pred hCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEec
Confidence 1233666675432 12456788999999999854433444
No 93
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=59.95 E-value=1.3e+02 Score=26.80 Aligned_cols=97 Identities=13% Similarity=-0.018 Sum_probs=52.6
Q ss_pred CCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEE-Eeec-CCCC----CCHHHHHHHHHHHHHcCCcc
Q 025575 79 RERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLY-YQHR-VDTK----IPIEVTIGELKKLVEEGKIK 152 (250)
Q Consensus 79 R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~-~lh~-p~~~----~~~~~~~~~l~~l~~~G~ir 152 (250)
..++.|..|+.... ......+.+... .+-+.|+.+|+|+|++- -.|. +.+. .+........+++++.=.+-
T Consensus 202 G~d~~v~iRi~~~D--~~~~g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iP 278 (353)
T cd02930 202 GEDFIIIYRLSMLD--LVEGGSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIP 278 (353)
T ss_pred CCCceEEEEecccc--cCCCCCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCC
Confidence 35677777876431 000123444443 34455777888887772 1231 1111 11111234455666665666
Q ss_pred eEecCcc-cHHHHHHHhhcCCceEEee
Q 025575 153 YIGLSEA-CAATIRRAHAVHPITAVQL 178 (250)
Q Consensus 153 ~iGvSn~-~~~~l~~~~~~~~~~~~q~ 178 (250)
-+++-.. +++.++++++....+.+++
T Consensus 279 Vi~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 279 VIASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred EEEcCCCCCHHHHHHHHHCCCCChhHh
Confidence 6666554 7788888887766666655
No 94
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=59.83 E-value=1.1e+02 Score=27.22 Aligned_cols=105 Identities=13% Similarity=0.202 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHcC-CCcccEEEeecCCCC-----------CCHHHHHHHHHH-HHHcCC---cceEecC--cccHHHHHH
Q 025575 105 VRACCEASLKRLD-IDCIDLYYQHRVDTK-----------IPIEVTIGELKK-LVEEGK---IKYIGLS--EACAATIRR 166 (250)
Q Consensus 105 i~~~l~~sL~~L~-~d~iDl~~lh~p~~~-----------~~~~~~~~~l~~-l~~~G~---ir~iGvS--n~~~~~l~~ 166 (250)
+++-.+.-+++|+ .+....+-||.+++. .+++++++++.+ +.+.|+ ++++=+. |-+.+++++
T Consensus 196 i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~ 275 (345)
T PRK14457 196 IPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEE 275 (345)
T ss_pred HHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHH
Confidence 4443343344443 234567889998653 346777877766 445553 4565554 445566655
Q ss_pred Hhhc---CCceEEeeecCcCCcC----ch----hhhHHHHHHhCCeEEEeccCc
Q 025575 167 AHAV---HPITAVQLEWSLWSRD----VE----AEIVPTCRELGIGIVAYGPLG 209 (250)
Q Consensus 167 ~~~~---~~~~~~q~~~n~~~~~----~~----~~~~~~~~~~gi~via~spl~ 209 (250)
+.+. .+..++-++||++... +. ....+.++++|+.+....+.+
T Consensus 276 La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G 329 (345)
T PRK14457 276 LANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRG 329 (345)
T ss_pred HHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCC
Confidence 5443 4457888999987431 11 245667778899999887774
No 95
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=59.29 E-value=1.1e+02 Score=25.91 Aligned_cols=106 Identities=13% Similarity=0.010 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhc--CCceEEe
Q 025575 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV--HPITAVQ 177 (250)
Q Consensus 100 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~--~~~~~~q 177 (250)
.+++.+.+...+.++ -|.|+||+=. .|......++.-+.+..+++.-. .-|.|-+++++.++++++. +..-++
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~iIN- 97 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKCVVN- 97 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCcEEE-
Confidence 456677777777665 5999999864 23321222333333333333212 2377889999999999886 433232
Q ss_pred eecCcCCc-CchhhhHHHHHHhCCeEEEeccCccC
Q 025575 178 LEWSLWSR-DVEAEIVPTCRELGIGIVAYGPLGQG 211 (250)
Q Consensus 178 ~~~n~~~~-~~~~~~~~~~~~~gi~via~spl~~G 211 (250)
..+.... ....++++.++++|..++.+..-..|
T Consensus 98 -sIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 98 -SINLEDGEERFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred -eCCCCCCccccHHHHHHHHHhCCCEEEeccCCCC
Confidence 3333321 11257889999999999987653333
No 96
>PRK14017 galactonate dehydratase; Provisional
Probab=59.17 E-value=97 Score=27.84 Aligned_cols=83 Identities=10% Similarity=0.049 Sum_probs=59.6
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcccHHHHHHHhhcCCceEEeeecCcCCc-CchhhhHHHHHHh
Q 025575 121 IDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCREL 198 (250)
Q Consensus 121 iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~ 198 (250)
+++.++..|-+.. .++.+.+|.+...+. ..|=|.++...+..+++...++++|+..+-.-. ..-.++.+.|+++
T Consensus 203 ~~~~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~ 278 (382)
T PRK14017 203 YRPMFIEEPVLPE----NAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAY 278 (382)
T ss_pred cCCCeEECCCCcC----CHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHc
Confidence 4555666664322 356788888887765 556677899999999888888899887664422 1125899999999
Q ss_pred CCeEEEecc
Q 025575 199 GIGIVAYGP 207 (250)
Q Consensus 199 gi~via~sp 207 (250)
||.++..+.
T Consensus 279 gi~~~~h~~ 287 (382)
T PRK14017 279 DVALAPHCP 287 (382)
T ss_pred CCeEeecCC
Confidence 999997654
No 97
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=58.69 E-value=29 Score=32.52 Aligned_cols=126 Identities=17% Similarity=0.115 Sum_probs=69.5
Q ss_pred HHHHHHHHcCCCeEe--CcCCcC---C-----CChHHHHHHHhcC---CCCCCEEEEeeeCcccCCC-----------CC
Q 025575 42 ALIHHAINSGITLLD--TSDIYG---P-----YTNEILVGKALKG---GMRERVELATKFGISFADG-----------GK 97 (250)
Q Consensus 42 ~~l~~A~~~Gi~~~D--tA~~Yg---~-----g~sE~~lg~~l~~---~~R~~~~i~tK~~~~~~~~-----------~~ 97 (250)
+-.....+.|+..+- ||..|- + |+-|.++.-+-+. ..+-++||++-++...... ..
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~ 185 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGLI 185 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEEE
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEEE
Confidence 345555677877553 444441 1 3444444333222 2577899999887542111 01
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhc---CCce
Q 025575 98 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV---HPIT 174 (250)
Q Consensus 98 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~---~~~~ 174 (250)
...++ ++.-+|+.+.|+|.+. .++++.++..++.+++|+..+||+-..-++.++++++. +.+.
T Consensus 186 vEvd~-------~ri~kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~ 251 (546)
T PF01175_consen 186 VEVDP-------SRIEKRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLV 251 (546)
T ss_dssp EES-H-------HHHHHHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE
T ss_pred EEECH-------HHHHHHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcc
Confidence 12233 3444567778998762 34889999999999999999999999888999998876 3344
Q ss_pred EEeeecC
Q 025575 175 AVQLEWS 181 (250)
Q Consensus 175 ~~q~~~n 181 (250)
.-|...|
T Consensus 252 tDQTS~H 258 (546)
T PF01175_consen 252 TDQTSAH 258 (546)
T ss_dssp ---SSTT
T ss_pred cCCCccc
Confidence 5576553
No 98
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=58.32 E-value=63 Score=26.66 Aligned_cols=97 Identities=16% Similarity=0.110 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhh---cCCceEE
Q 025575 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHA---VHPITAV 176 (250)
Q Consensus 100 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~---~~~~~~~ 176 (250)
++.+. +..+-+.|.++|+++|++- .|.......+.++.+.+.... .+-.+++......++.+++ ...++.+
T Consensus 11 ~~~~~-k~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEE-KLEIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHH-HHHHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHH-HHHHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 34444 4556667999999888887 332222223445555555555 4444555556666666443 2334444
Q ss_pred eeecCcCC--------------cCchhhhHHHHHHhCCeE
Q 025575 177 QLEWSLWS--------------RDVEAEIVPTCRELGIGI 202 (250)
Q Consensus 177 q~~~n~~~--------------~~~~~~~~~~~~~~gi~v 202 (250)
.+..+.-. ...-.+.+++++++|..+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 44332222 111147888999999888
No 99
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=58.24 E-value=20 Score=31.04 Aligned_cols=103 Identities=11% Similarity=0.051 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhcCCceEEeee
Q 025575 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLE 179 (250)
Q Consensus 100 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~ 179 (250)
.+.+.. ..+-+.|.++|+++|.+=....|...-...+.++.+..+.+...++...+. .+...++.+++... +.+.+-
T Consensus 23 ~s~e~k-~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g~-~~v~i~ 99 (287)
T PRK05692 23 IPTADK-IALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAGA-DEVAVF 99 (287)
T ss_pred cCHHHH-HHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcCC-CEEEEE
Confidence 344443 456677999999999886444443111122345666666554445555554 47778888877632 233322
Q ss_pred cCc--C------CcCc------hhhhHHHHHHhCCeEEEe
Q 025575 180 WSL--W------SRDV------EAEIVPTCRELGIGIVAY 205 (250)
Q Consensus 180 ~n~--~------~~~~------~~~~~~~~~~~gi~via~ 205 (250)
++. . .... -.+.+++++++|+.+.++
T Consensus 100 ~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~ 139 (287)
T PRK05692 100 ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGY 139 (287)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 221 1 0111 136899999999988643
No 100
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=58.20 E-value=1e+02 Score=27.52 Aligned_cols=86 Identities=13% Similarity=0.132 Sum_probs=55.5
Q ss_pred EEeecCCCC-----------CCHHHHHHHHHHHHHc-CC---cceEecC--cccHHHHHHHh---hcCCceEEeeecCcC
Q 025575 124 YYQHRVDTK-----------IPIEVTIGELKKLVEE-GK---IKYIGLS--EACAATIRRAH---AVHPITAVQLEWSLW 183 (250)
Q Consensus 124 ~~lh~p~~~-----------~~~~~~~~~l~~l~~~-G~---ir~iGvS--n~~~~~l~~~~---~~~~~~~~q~~~n~~ 183 (250)
+-||.|+.. .+++++++++.++.++ |+ ++++=+. |-+.++++++. ...+..++-++||+.
T Consensus 216 iSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~ 295 (342)
T PRK14465 216 ISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTE 295 (342)
T ss_pred EEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCC
Confidence 568888643 3567889999887754 22 2344443 34555555544 334577889999985
Q ss_pred CcC---ch----hhhHHHHHHhCCeEEEeccCc
Q 025575 184 SRD---VE----AEIVPTCRELGIGIVAYGPLG 209 (250)
Q Consensus 184 ~~~---~~----~~~~~~~~~~gi~via~spl~ 209 (250)
... +. ....+.++++||.+....+.+
T Consensus 296 ~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G 328 (342)
T PRK14465 296 FFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPG 328 (342)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCC
Confidence 321 11 356677788899999988775
No 101
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=57.73 E-value=70 Score=24.57 Aligned_cols=63 Identities=6% Similarity=0.169 Sum_probs=44.9
Q ss_pred CCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcC--CCcccEEEeecCCCCCCHHHHHHHHHHHHHc
Q 025575 78 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD--IDCIDLYYQHRVDTKIPIEVTIGELKKLVEE 148 (250)
Q Consensus 78 ~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~--~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~ 148 (250)
.|=-+.|+-|++. ...+..+++.+.++.+.+. +...|++++.......+.+++...|..+.++
T Consensus 46 ~RlG~sVSKKvg~--------AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGK--------AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEeccccc--------chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 3445677777663 4567888888888888763 4578999999887766677777666666543
No 102
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=57.14 E-value=10 Score=31.88 Aligned_cols=76 Identities=18% Similarity=0.317 Sum_probs=47.5
Q ss_pred CCCcccCceeecccccCCCCCCC--CChHHHHHHHHHHH----HcCCCeEeCcC--C-cCCCChHHHHHHHhcCC-----
Q 025575 12 SQGLEVSAQGLGCMAMSCLYGPP--EPEPDMIALIHHAI----NSGITLLDTSD--I-YGPYTNEILVGKALKGG----- 77 (250)
Q Consensus 12 ~~g~~vs~lglG~~~~g~~~~~~--~~~~~~~~~l~~A~----~~Gi~~~DtA~--~-Yg~g~sE~~lg~~l~~~----- 77 (250)
.+|+.+|.+||.+.+=- .+|+. ...+++.+++..|+ +.|||.|--|. . |..+ ++....+++...
T Consensus 65 etgv~ipSmClSaHRRf-PfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~-d~eT~~rFi~g~~~a~~ 142 (287)
T COG3623 65 ETGVRIPSMCLSAHRRF-PFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEA-DEETRQRFIEGLKWAVE 142 (287)
T ss_pred HhCCCccchhhhhhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccC-CHHHHHHHHHHHHHHHH
Confidence 68999999999986521 12333 23455666666655 78999998775 2 3332 444455555442
Q ss_pred --CCCCEEEEeeeC
Q 025575 78 --MRERVELATKFG 89 (250)
Q Consensus 78 --~R~~~~i~tK~~ 89 (250)
.+.+|.++--+.
T Consensus 143 lA~~aqV~lAvEiM 156 (287)
T COG3623 143 LAARAQVMLAVEIM 156 (287)
T ss_pred HHHhhccEEEeeec
Confidence 677777777664
No 103
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=56.74 E-value=1.4e+02 Score=26.42 Aligned_cols=151 Identities=9% Similarity=0.024 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHc
Q 025575 37 EPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRL 116 (250)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L 116 (250)
.++..+.+..+++.|++.|=.--...+-..+...=+++++.-.+++.|..-.. ..++.+...+-++ .|+.
T Consensus 142 ~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN--------~~~~~~~A~~~~~-~l~~- 211 (355)
T cd03321 142 AKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYN--------QSLTVPEAIERGQ-ALDQ- 211 (355)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCC--------CCcCHHHHHHHHH-HHHc-
Confidence 34555666666777877553211111000222333455543334555544332 1345554333222 2333
Q ss_pred CCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcccHHHHHHHhhcCCceEEeeecCcCCc-CchhhhHHH
Q 025575 117 DIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPT 194 (250)
Q Consensus 117 ~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~ 194 (250)
+++.++..|-.. +.++.+.++++.-.|. ..|=+.++...+.++++...++++|+..+-.-. ....++.+.
T Consensus 212 ----~~i~~iEeP~~~----~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~ 283 (355)
T cd03321 212 ----EGLTWIEEPTLQ----HDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASAL 283 (355)
T ss_pred ----CCCCEEECCCCC----cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHH
Confidence 355666766432 2466777888775543 456666889999999888888898887665432 112489999
Q ss_pred HHHhCCeEEEe
Q 025575 195 CRELGIGIVAY 205 (250)
Q Consensus 195 ~~~~gi~via~ 205 (250)
|+++|+.++..
T Consensus 284 A~~~gi~~~~h 294 (355)
T cd03321 284 AEQAGIPMSSH 294 (355)
T ss_pred HHHcCCeeccc
Confidence 99999998754
No 104
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=56.60 E-value=1.2e+02 Score=27.07 Aligned_cols=101 Identities=14% Similarity=0.122 Sum_probs=61.0
Q ss_pred HHHcCCCcccEEEeecCCCC-----------CCHHHHHHHHHHHHHc-CC---cceEecC--cccHHHHHHHhhc---CC
Q 025575 113 LKRLDIDCIDLYYQHRVDTK-----------IPIEVTIGELKKLVEE-GK---IKYIGLS--EACAATIRRAHAV---HP 172 (250)
Q Consensus 113 L~~L~~d~iDl~~lh~p~~~-----------~~~~~~~~~l~~l~~~-G~---ir~iGvS--n~~~~~l~~~~~~---~~ 172 (250)
|...+...+++ -||.+++. .+++++++++.+...+ |+ |+++=+. |-+.++++++.+. .+
T Consensus 208 L~~~~l~~L~i-SLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~~ 286 (354)
T PRK14460 208 LGESGLAFLAV-SLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRTK 286 (354)
T ss_pred HHhCCCcEEEE-eCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 44455434443 47777543 3567788888766443 22 3344333 4555666555443 44
Q ss_pred ceEEeeecCcCCcC----ch----hhhHHHHHHhCCeEEEeccCc------cCcCC
Q 025575 173 ITAVQLEWSLWSRD----VE----AEIVPTCRELGIGIVAYGPLG------QGFLS 214 (250)
Q Consensus 173 ~~~~q~~~n~~~~~----~~----~~~~~~~~~~gi~via~spl~------~G~L~ 214 (250)
..++-++||+.... +. ....+..+++|+.+....+.+ +|.|.
T Consensus 287 ~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~~~Gi~vtir~~~G~di~aaCGqL~ 342 (354)
T PRK14460 287 CKLNLIVYNPAEGLPYSAPTEERILAFEKYLWSKGITAIIRKSKGQDIKAACGQLK 342 (354)
T ss_pred CcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCchHhccccch
Confidence 57888999986432 11 246677788899999888774 56666
No 105
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=56.21 E-value=1.1e+02 Score=25.99 Aligned_cols=104 Identities=14% Similarity=0.132 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCC-----CCCCHHHHHHHHHHHHHc-CCcceEecC---cccHHHHHHHhhc
Q 025575 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVD-----TKIPIEVTIGELKKLVEE-GKIKYIGLS---EACAATIRRAHAV 170 (250)
Q Consensus 100 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~-----~~~~~~~~~~~l~~l~~~-G~ir~iGvS---n~~~~~l~~~~~~ 170 (250)
.+.+.. ..+-+.|.++|+++|.+-+..... ...+....++.++.+++. +.++...++ ....+.++.+.+.
T Consensus 19 ~~~~~k-~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~ 97 (263)
T cd07943 19 FTLEQV-RAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAADL 97 (263)
T ss_pred cCHHHH-HHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHHc
Confidence 344444 445566888999988886442110 001111245555666443 335555543 2235666666554
Q ss_pred CCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEe
Q 025575 171 HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 205 (250)
Q Consensus 171 ~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~ 205 (250)
.++.+.+-++.-......+.++.++++|+.+...
T Consensus 98 -g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 98 -GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred -CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 3455544333322222247888888888776543
No 106
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=56.20 E-value=1.4e+02 Score=26.14 Aligned_cols=153 Identities=16% Similarity=0.127 Sum_probs=91.9
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~ 115 (250)
+.++..+.+....+.|++.|=.-- +. ..+...=+++++.- .++-|.-=.. ..++++..+ . ++.
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~-~~d~~~v~~vr~~~-~~~~l~vDaN--------~~~~~~~a~--~---~~~ 194 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP-QIMHQLVKLRRLRF-PQIPLVIDAN--------ESYDLQDFP--R---LKE 194 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC-chhHHHHHHHHHhC-CCCcEEEECC--------CCCCHHHHH--H---HHH
Confidence 345666777778889999773221 11 12323334444422 2322222211 134554431 1 333
Q ss_pred cCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcccHHHHHHHhhcCCceEEeeecCcCCc-CchhhhHH
Q 025575 116 LDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVP 193 (250)
Q Consensus 116 L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~ 193 (250)
|. ..++.++..|-+ .+.++.+.++++.-.+. ..|=|.++...+..+++...++++|+...-.-. ....++..
T Consensus 195 l~--~~~~~~iEeP~~----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~ 268 (324)
T TIGR01928 195 LD--RYQLLYIEEPFK----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIE 268 (324)
T ss_pred Hh--hCCCcEEECCCC----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHH
Confidence 42 245666666632 24467788888876664 667778899999999988888999987664332 11258999
Q ss_pred HHHHhCCeEEEeccCccC
Q 025575 194 TCRELGIGIVAYGPLGQG 211 (250)
Q Consensus 194 ~~~~~gi~via~spl~~G 211 (250)
.|+++|+.++..+.+..|
T Consensus 269 ~A~~~gi~~~~~~~~es~ 286 (324)
T TIGR01928 269 TCREHGAKVWIGGMLETG 286 (324)
T ss_pred HHHHcCCeEEEcceEccc
Confidence 999999999876555444
No 107
>PLN00191 enolase
Probab=56.16 E-value=1.6e+02 Score=27.46 Aligned_cols=96 Identities=10% Similarity=0.025 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEec--CcccHHHHHHHhhcCCceEEee
Q 025575 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGL--SEACAATIRRAHAVHPITAVQL 178 (250)
Q Consensus 101 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGv--Sn~~~~~l~~~~~~~~~~~~q~ 178 (250)
+++.+.+-+...++ ..++.+|..|-+. +-|+.+.+|.+..+|.-+|= ...+++.+.++++....+++++
T Consensus 296 s~~e~i~~~~~L~~-----~y~I~~IEDPl~~----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~i 366 (457)
T PLN00191 296 SGDELIDLYKEFVS-----DYPIVSIEDPFDQ----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLL 366 (457)
T ss_pred CHHHHHHHHHHHhh-----cCCcEEEECCCCc----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEe
Confidence 55555444444433 3457778877443 34777788888888876661 2356888999988888888888
Q ss_pred ecCcCCcC-chhhhHHHHHHhCCeEEEe
Q 025575 179 EWSLWSRD-VEAEIVPTCRELGIGIVAY 205 (250)
Q Consensus 179 ~~n~~~~~-~~~~~~~~~~~~gi~via~ 205 (250)
..|-+-.- ...++.+.|+++|+.++.-
T Consensus 367 Kl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 367 KVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred cccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 77754322 2248999999999999764
No 108
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=55.27 E-value=1.3e+02 Score=25.61 Aligned_cols=148 Identities=14% Similarity=0.062 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHH--HHHhcC-CCCCC-EEEEeeeCcccCCCCCCCCCHHHHHHHHHHHH
Q 025575 38 PDMIALIHHAINSGITLLDTSDIYGPYTNEILV--GKALKG-GMRER-VELATKFGISFADGGKIRGDPAYVRACCEASL 113 (250)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~l--g~~l~~-~~R~~-~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL 113 (250)
+...+.++.--+.|+.+|..++.=+.+..+..+ ...|++ ..-+- ..++.. +.++..+...+...
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r-----------~~n~~~l~~~L~~~- 82 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCI-----------GATREEIREILREY- 82 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeec-----------CCCHHHHHHHHHHH-
Confidence 445555555557789999998765533333333 233332 11111 122222 34677777777654
Q ss_pred HHcCCCcccEEEee-cCC------CCCCHHHHHHHHHHHHHcCCcceEecCccc--------H-HHHHHHhhc----CCc
Q 025575 114 KRLDIDCIDLYYQH-RVD------TKIPIEVTIGELKKLVEEGKIKYIGLSEAC--------A-ATIRRAHAV----HPI 173 (250)
Q Consensus 114 ~~L~~d~iDl~~lh-~p~------~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~--------~-~~l~~~~~~----~~~ 173 (250)
..+|++ +++.|- .|. .........+-++.+++...--+||+..++ . ++++.+.+. ..+
T Consensus 83 ~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f 160 (272)
T TIGR00676 83 RELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADY 160 (272)
T ss_pred HHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCe
Confidence 777753 233332 121 112223345455555554223578877642 1 234444332 335
Q ss_pred eEEeeecCcCCcCchhhhHHHHHHhCCeE
Q 025575 174 TAVQLEWSLWSRDVEAEIVPTCRELGIGI 202 (250)
Q Consensus 174 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~v 202 (250)
-+-|.-|++ ....++++.|++.|+.+
T Consensus 161 ~iTQ~~fd~---~~~~~~~~~~~~~gi~~ 186 (272)
T TIGR00676 161 AITQLFFDN---DDYYRFVDRCRAAGIDV 186 (272)
T ss_pred EeeccccCH---HHHHHHHHHHHHcCCCC
Confidence 555665554 22357899999997654
No 109
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=55.26 E-value=1.4e+02 Score=26.37 Aligned_cols=71 Identities=14% Similarity=0.100 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCcc-eEecCcccHHHHHHHhhcCCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEeccCccC
Q 025575 139 IGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQG 211 (250)
Q Consensus 139 ~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G 211 (250)
++.|.+++++-.+. ..|=|-++...+.++++....+++|+..+.+-. ..++++.|+++||.++..|.+..+
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GG--it~~lkiA~~~gi~v~v~s~~es~ 244 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGG--VRAALDIAEQIGLPVVVSSALDTS 244 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCC--HHHHHHHHHHcCCcEEEeCCcccH
Confidence 45566666554332 334445677778888777788888887766543 257888999999999987666444
No 110
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=55.20 E-value=31 Score=30.85 Aligned_cols=98 Identities=11% Similarity=0.026 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHcCCCcccEEEeecCCC--C-CCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhcCCceEEeee-
Q 025575 104 YVRACCEASLKRLDIDCIDLYYQHRVDT--K-IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLE- 179 (250)
Q Consensus 104 ~i~~~l~~sL~~L~~d~iDl~~lh~p~~--~-~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~- 179 (250)
.-+..+-+.|.++|+++|++=..-+|.. . .+.++.++.+ ++...++..++. .+...++.+++... +.+.+-
T Consensus 68 e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i---~~~~~~~~~~l~-~n~~die~A~~~g~-~~v~i~~ 142 (347)
T PLN02746 68 SVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAV---RNLEGARFPVLT-PNLKGFEAAIAAGA-KEVAVFA 142 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHH---HhccCCceeEEc-CCHHHHHHHHHcCc-CEEEEEE
Confidence 3445677779999999999864444421 1 1223444444 333335554553 47888888887632 222222
Q ss_pred -cCcC------CcCch------hhhHHHHHHhCCeEEEec
Q 025575 180 -WSLW------SRDVE------AEIVPTCRELGIGIVAYG 206 (250)
Q Consensus 180 -~n~~------~~~~~------~~~~~~~~~~gi~via~s 206 (250)
.|.. ....+ .+++++++++|+.|.++-
T Consensus 143 s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~i 182 (347)
T PLN02746 143 SASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYV 182 (347)
T ss_pred ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 1111 11111 378899999999986444
No 111
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=54.02 E-value=1.4e+02 Score=27.91 Aligned_cols=67 Identities=7% Similarity=0.064 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcce----EecCcccHHHHHHHhhc---CCceEEeeecCcCCcCchhhhHHHHHHhCC
Q 025575 132 KIPIEVTIGELKKLVEEGKIKY----IGLSEACAATIRRAHAV---HPITAVQLEWSLWSRDVEAEIVPTCRELGI 200 (250)
Q Consensus 132 ~~~~~~~~~~l~~l~~~G~ir~----iGvSn~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi 200 (250)
....++..++++.+++.|.... +|+-+.+.+.+++.++. .+++ ++.++++.+.+..++.+.+++.+.
T Consensus 319 ~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~--~~~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 319 GTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPD--QANWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCC--ceEEEEecCCCCcHHHHHHHhhcc
Confidence 3456788899999999986432 47777788877665443 3333 334456666555678888887764
No 112
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=53.76 E-value=1.2e+02 Score=26.31 Aligned_cols=72 Identities=10% Similarity=0.007 Sum_probs=49.1
Q ss_pred HHHHHHHHcCCc-ceEecCcccHHHHHHHhhcCCceEEeeecCcCCc-CchhhhHHHHHHhCCeEEEeccCccC
Q 025575 140 GELKKLVEEGKI-KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAYGPLGQG 211 (250)
Q Consensus 140 ~~l~~l~~~G~i-r~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~spl~~G 211 (250)
+.+.++.+.-.+ -..|=|-++...+..+++...++++|+.....-. ....++.+.|+.+|+.++..+.+..|
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~ 269 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESS 269 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchH
Confidence 455566555433 2445556778888888877777888887664332 11258999999999999987666555
No 113
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=53.46 E-value=1.3e+02 Score=24.95 Aligned_cols=97 Identities=11% Similarity=0.212 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCc------ceEecCcc-cHHHHHHHhhcCCceEEe
Q 025575 105 VRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI------KYIGLSEA-CAATIRRAHAVHPITAVQ 177 (250)
Q Consensus 105 i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i------r~iGvSn~-~~~~l~~~~~~~~~~~~q 177 (250)
....++..-+--+...|+-+++-..+.....+|-+...++|.+.|-- .+-|+++. +.-...+......+.++-
T Consensus 78 y~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftIIt 157 (235)
T COG2949 78 YTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTIIT 157 (235)
T ss_pred HHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEEEe
Confidence 44455666666666789999998877777788889999999999863 45577765 333444555556777666
Q ss_pred eecCcCCcCchhhhHHHHHHhCCeEEEecc
Q 025575 178 LEWSLWSRDVEAEIVPTCRELGIGIVAYGP 207 (250)
Q Consensus 178 ~~~n~~~~~~~~~~~~~~~~~gi~via~sp 207 (250)
-+||. +..+=.|+.+||.-+++..
T Consensus 158 Q~FHc------eRAlfiA~~~gIdAic~~a 181 (235)
T COG2949 158 QRFHC------ERALFIARQMGIDAICFAA 181 (235)
T ss_pred ccccc------HHHHHHHHHhCCceEEecC
Confidence 56663 5778899999999998763
No 114
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=53.18 E-value=69 Score=29.56 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCCCeEeCcCCcC---------CCChHHHHHHHhcCCCC---CCEEEEeeeCcccCCCCCCCCCHHHHHHH
Q 025575 41 IALIHHAINSGITLLDTSDIYG---------PYTNEILVGKALKGGMR---ERVELATKFGISFADGGKIRGDPAYVRAC 108 (250)
Q Consensus 41 ~~~l~~A~~~Gi~~~DtA~~Yg---------~g~sE~~lg~~l~~~~R---~~~~i~tK~~~~~~~~~~~~~~~~~i~~~ 108 (250)
.+.++...+.|+|.+-.+-.-. .+.+...+-++++...+ +.+.+.-=++. +..+.+.+++.
T Consensus 151 ~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~Gl-------Pgqt~e~~~~~ 223 (453)
T PRK09249 151 LEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGL-------PKQTPESFART 223 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccC-------CCCCHHHHHHH
Confidence 3455555666888876443222 22233333344433211 12222222232 24578888887
Q ss_pred HHHHHHHcCCCcccEEEee-cCC----------CCC-CHHH---HH-HHHHHHHHcCCcceEecCcccH
Q 025575 109 CEASLKRLDIDCIDLYYQH-RVD----------TKI-PIEV---TI-GELKKLVEEGKIKYIGLSEACA 161 (250)
Q Consensus 109 l~~sL~~L~~d~iDl~~lh-~p~----------~~~-~~~~---~~-~~l~~l~~~G~ir~iGvSn~~~ 161 (250)
++..++ ++++++.++.+- .|. ... +.++ .+ .+.+.|.+.|..+ +++|||..
T Consensus 224 l~~~~~-l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~-ye~s~far 290 (453)
T PRK09249 224 LEKVLE-LRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQY-IGMDHFAL 290 (453)
T ss_pred HHHHHh-cCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEE-EeccceeC
Confidence 777664 888998888653 111 001 1111 22 3445566667654 88888864
No 115
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=52.74 E-value=74 Score=28.40 Aligned_cols=92 Identities=13% Similarity=0.076 Sum_probs=60.2
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHHHcC--Cc--ceEecC--cccHHHHHHHhhc---CCceEEeeecCc
Q 025575 123 LYYQHRVDTK-----------IPIEVTIGELKKLVEEG--KI--KYIGLS--EACAATIRRAHAV---HPITAVQLEWSL 182 (250)
Q Consensus 123 l~~lh~p~~~-----------~~~~~~~~~l~~l~~~G--~i--r~iGvS--n~~~~~l~~~~~~---~~~~~~q~~~n~ 182 (250)
.+-||.|++. .+++++++++++..++. +| -++=+. |-+.+++.++.+. .+..++-++||+
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Confidence 4678988542 35788889988875543 22 234333 5566666665443 557788999997
Q ss_pred CCc-----Cch---hhhHHHHHHhCCeEEEeccCc------cCcCC
Q 025575 183 WSR-----DVE---AEIVPTCRELGIGIVAYGPLG------QGFLS 214 (250)
Q Consensus 183 ~~~-----~~~---~~~~~~~~~~gi~via~spl~------~G~L~ 214 (250)
... ... ....+..+++|+.+....+.+ +|.|.
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~dI~aACGQL~ 335 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGEDIFAACGMLS 335 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCCchhhcCccch
Confidence 533 111 356677788999999888774 56666
No 116
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=52.42 E-value=1.7e+02 Score=26.07 Aligned_cols=96 Identities=16% Similarity=0.247 Sum_probs=59.7
Q ss_pred CcccEE-EeecCCCC-----------CCHHHHHHHHHHHHH-cCC---cceEecC--cccHHHHHHHhhc---C-----C
Q 025575 119 DCIDLY-YQHRVDTK-----------IPIEVTIGELKKLVE-EGK---IKYIGLS--EACAATIRRAHAV---H-----P 172 (250)
Q Consensus 119 d~iDl~-~lh~p~~~-----------~~~~~~~~~l~~l~~-~G~---ir~iGvS--n~~~~~l~~~~~~---~-----~ 172 (250)
.++||. -||.+++. .+++++++++.+..+ .|. |+++=+. |.+.+++.++.+. . .
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~ 282 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHL 282 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCc
Confidence 458875 47877442 346677777666655 343 3444333 4455666665543 2 3
Q ss_pred ceEEeeecCcCCcC------ch----hhhHHHHHHhCCeEEEeccCc------cCcCC
Q 025575 173 ITAVQLEWSLWSRD------VE----AEIVPTCRELGIGIVAYGPLG------QGFLS 214 (250)
Q Consensus 173 ~~~~q~~~n~~~~~------~~----~~~~~~~~~~gi~via~spl~------~G~L~ 214 (250)
..++-++||++... +. ....+..+++|+.+....+.+ +|.|.
T Consensus 283 ~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~di~aaCGqL~ 340 (347)
T PRK14453 283 YHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGSDISAACGQLY 340 (347)
T ss_pred ceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCchhhccccch
Confidence 56888899986432 11 356777888999999888775 55555
No 117
>PRK06740 histidinol-phosphatase; Validated
Probab=51.85 E-value=1.7e+02 Score=25.85 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=19.9
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCC
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDI 60 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~ 60 (250)
......+.+++|++.|+..|=-+++
T Consensus 59 ~~~~~e~yv~~Ai~~G~~~ig~SdH 83 (331)
T PRK06740 59 TTKWIDLYLEEALRKGIKEVGIVDH 83 (331)
T ss_pred ccchHHHHHHHHHHCCCcEEEECCC
Confidence 3456899999999999997766655
No 118
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=51.76 E-value=45 Score=30.99 Aligned_cols=64 Identities=16% Similarity=0.135 Sum_probs=42.2
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecC-cccHHHHHHHhhcCCceEEeeec
Q 025575 113 LKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEW 180 (250)
Q Consensus 113 L~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~q~~~ 180 (250)
...+|.|++=+.+.....+..+.+..-+....+. ++.+||- |-+++.+.++++...++++|+.-
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG 337 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQLSLAAVQLHG 337 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCC
Confidence 3447888888864333223344433332222222 8899987 77899999998888899999854
No 119
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=51.67 E-value=1.4e+02 Score=27.58 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHcCCcce----EecCcccHHHHHHHhhc---CCceEEeeecCcCCcCchhhhHHHHHHhCCeE
Q 025575 133 IPIEVTIGELKKLVEEGKIKY----IGLSEACAATIRRAHAV---HPITAVQLEWSLWSRDVEAEIVPTCRELGIGI 202 (250)
Q Consensus 133 ~~~~~~~~~l~~l~~~G~ir~----iGvSn~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v 202 (250)
...++..++++.+++.|.--. +|+-+.+.+.+.+.++. ..++. +.++++.+-+...+.+.++++|.-.
T Consensus 320 ~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~--~~~~~l~P~PGT~l~~~~~~~g~~~ 394 (472)
T TIGR03471 320 LTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHT--IQVSLAAPYPGTELYDQAKQNGWIT 394 (472)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCc--eeeeecccCCCcHHHHHHHHCCCcC
Confidence 345678888888888886432 36667777777765543 33333 3345555555568888888887643
No 120
>PRK05588 histidinol-phosphatase; Provisional
Probab=51.42 E-value=1.5e+02 Score=24.91 Aligned_cols=105 Identities=12% Similarity=0.150 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHcCCCeEeCcCCcCCC---------ChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHH
Q 025575 37 EPDMIALIHHAINSGITLLDTSDIYGPY---------TNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRA 107 (250)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g---------~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~ 107 (250)
.....+.++.|++.|+..+ .+++.... .-+..+ +.++..+..+|.+.--++.. +. ...
T Consensus 15 ~~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~~~~I~~GiE~~~~----------~~-~~~ 81 (255)
T PRK05588 15 KMKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYRNNKLLLGIELGME----------KD-LIE 81 (255)
T ss_pred ccCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHhcCCcceEEEeccc----------CC-CHH
Confidence 3457899999999999998 66663110 011111 11222222455555555432 22 245
Q ss_pred HHHHHHHHcCCCcccEEEeecCCCCC----------CHHH----HHHHHHHHHH-cCCcceEe
Q 025575 108 CCEASLKRLDIDCIDLYYQHRVDTKI----------PIEV----TIGELKKLVE-EGKIKYIG 155 (250)
Q Consensus 108 ~l~~sL~~L~~d~iDl~~lh~p~~~~----------~~~~----~~~~l~~l~~-~G~ir~iG 155 (250)
.+++.|++...||+ +.-+|+.+... +.++ -++.+.++.+ .+++.-||
T Consensus 82 ~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlg 143 (255)
T PRK05588 82 ENKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLG 143 (255)
T ss_pred HHHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 56777777777776 67889854211 2233 3466677666 46555444
No 121
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=51.37 E-value=2.2e+02 Score=26.89 Aligned_cols=54 Identities=19% Similarity=0.424 Sum_probs=34.4
Q ss_pred cCcccHHHHHHHhhc-----CCceEE--eeecCcCCcCchhhhHHHHHHhCCeEEEeccCccCcCC
Q 025575 156 LSEACAATIRRAHAV-----HPITAV--QLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLS 214 (250)
Q Consensus 156 vSn~~~~~l~~~~~~-----~~~~~~--q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~L~ 214 (250)
++--.+++++++.+. .|..++ |.-|+. .++++..+.+..|++++. .|++.|+|.
T Consensus 199 i~~p~~s~i~~av~llk~AKrPLlvvGkgAa~~~----ae~~l~~~Ve~~glPflp-tpMgKGll~ 259 (571)
T KOG1185|consen 199 IPGPPPSQIQKAVQLLKSAKRPLLVVGKGAAYAP----AEDQLRKFVETTGLPFLP-TPMGKGLLP 259 (571)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcEEEEecccccCc----cHHHHHHHHHhcCCCccc-CcccccCCC
Confidence 334456666665543 222221 334443 346888899999999885 789999887
No 122
>PRK07094 biotin synthase; Provisional
Probab=51.08 E-value=1.1e+02 Score=26.67 Aligned_cols=115 Identities=16% Similarity=0.158 Sum_probs=62.1
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCc----CCcCCCChHHHHHHHhcCCCC-CCEEEEeeeCcccCCCCCCCCCHHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTS----DIYGPYTNEILVGKALKGGMR-ERVELATKFGISFADGGKIRGDPAYVRACCE 110 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA----~~Yg~g~sE~~lg~~l~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~ 110 (250)
+.++..+.++.+.+.|++.|--. ..| ....+-+.++...+ ..+.+..-.+ ..+.+.+
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~gG~~~~~----~~~~l~~l~~~i~~~~~l~i~~~~g---------~~~~e~l----- 132 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQSGEDPYY----TDEKIADIIKEIKKELDVAITLSLG---------ERSYEEY----- 132 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCC----CHHHHHHHHHHHHccCCceEEEecC---------CCCHHHH-----
Confidence 56778888888889999876422 222 22333444443222 3443332111 1233332
Q ss_pred HHHHHcCCCcccEEEeecC--------CCCCCHHHHHHHHHHHHHcCCcc----eEecCcccHHHHHHHhh
Q 025575 111 ASLKRLDIDCIDLYYQHRV--------DTKIPIEVTIGELKKLVEEGKIK----YIGLSEACAATIRRAHA 169 (250)
Q Consensus 111 ~sL~~L~~d~iDl~~lh~p--------~~~~~~~~~~~~l~~l~~~G~ir----~iGvSn~~~~~l~~~~~ 169 (250)
+.|+..|++.+-+ =+... ......++.+++++.+++.|.-- -+|+...+.+++.+.+.
T Consensus 133 ~~Lk~aG~~~v~~-glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~ 202 (323)
T PRK07094 133 KAWKEAGADRYLL-RHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDIL 202 (323)
T ss_pred HHHHHcCCCEEEe-ccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHH
Confidence 2455567654432 11111 12345678899999999998621 25666777777666443
No 123
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=51.07 E-value=1.5e+02 Score=25.09 Aligned_cols=100 Identities=18% Similarity=0.121 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEE-eecCCCC-CCHH-H---HHHHHHHHHHcCCcceEecCcccHHHHHHHhhcCCc
Q 025575 100 GDPAYVRACCEASLKRLDIDCIDLYY-QHRVDTK-IPIE-V---TIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPI 173 (250)
Q Consensus 100 ~~~~~i~~~l~~sL~~L~~d~iDl~~-lh~p~~~-~~~~-~---~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~ 173 (250)
.+++.+.+..++.+ .-|.++||+=- --+|+.. .+.+ | +...++.+++.-.+ -|.+-+++++.++++++.+..
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~-plsiDT~~~~vi~~al~~G~~ 97 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV-PISVDTYRAEVARAALEAGAD 97 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCCHHHHHHHHHcCCC
Confidence 45666666655554 46889999932 1233322 1222 2 45555666655222 378889999999999988544
Q ss_pred eEEeeecCcCCcCchhhhHHHHHHhCCeEEEec
Q 025575 174 TAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYG 206 (250)
Q Consensus 174 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~s 206 (250)
-++-+ +... .+++++.++++|..++.+.
T Consensus 98 iINsi--s~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 98 IINDV--SGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred EEEEC--CCCC---CchhHHHHHHcCCcEEEEe
Confidence 33333 2222 3589999999999999854
No 124
>PRK06256 biotin synthase; Validated
Probab=50.81 E-value=1.7e+02 Score=25.57 Aligned_cols=118 Identities=18% Similarity=0.112 Sum_probs=59.8
Q ss_pred CChHHHHHHHHHHHHcCCC-eEeCcCCcCCCCh-HHHHHHHhcCCC-CCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHH
Q 025575 35 EPEPDMIALIHHAINSGIT-LLDTSDIYGPYTN-EILVGKALKGGM-RERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (250)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~-~~DtA~~Yg~g~s-E~~lg~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~ 111 (250)
.+.++..+.++.+.+.|++ +.-.+..+++... -..+-+.++... +-.+-+.+-.+ ..+++.+ +
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g---------~l~~e~l-----~ 156 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLG---------LLTEEQA-----E 156 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCC---------cCCHHHH-----H
Confidence 3678888888888999985 3322333333111 123444444321 12232322222 1234333 3
Q ss_pred HHHHcCCCcccEEEeec-------CCCCCCHHHHHHHHHHHHHcCCcce----EecCcccHHHHHHHh
Q 025575 112 SLKRLDIDCIDLYYQHR-------VDTKIPIEVTIGELKKLVEEGKIKY----IGLSEACAATIRRAH 168 (250)
Q Consensus 112 sL~~L~~d~iDl~~lh~-------p~~~~~~~~~~~~l~~l~~~G~ir~----iGvSn~~~~~l~~~~ 168 (250)
.|+..|++.+-+- +.. ..+....++.+++++.+++.|.--. +|+ +.+.+++.+.+
T Consensus 157 ~LkeaG~~~v~~~-lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~ 222 (336)
T PRK06256 157 RLKEAGVDRYNHN-LETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHA 222 (336)
T ss_pred HHHHhCCCEEecC-CccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHH
Confidence 4666776544321 111 1122346788899999999986322 344 45666555543
No 125
>PRK00077 eno enolase; Provisional
Probab=50.19 E-value=2.1e+02 Score=26.31 Aligned_cols=96 Identities=7% Similarity=0.017 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC--CcceEecC--cccHHHHHHHhhcCCceE
Q 025575 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG--KIKYIGLS--EACAATIRRAHAVHPITA 175 (250)
Q Consensus 100 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G--~ir~iGvS--n~~~~~l~~~~~~~~~~~ 175 (250)
.+++.+...+.+.++. .++.++..|-+.. -|+.+.+|.+.- +|.-.|== ..+++.+.++++....++
T Consensus 261 ~s~~e~~~~~~~l~e~-----y~i~~iEdPl~~~----D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDK-----YPIVSIEDGLDEN----DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhh-----CCcEEEEcCCCCc----cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 4555665555555554 4577788775433 356666676653 55544422 236899999988888888
Q ss_pred EeeecCcCCcC-chhhhHHHHHHhCCeEEE
Q 025575 176 VQLEWSLWSRD-VEAEIVPTCRELGIGIVA 204 (250)
Q Consensus 176 ~q~~~n~~~~~-~~~~~~~~~~~~gi~via 204 (250)
+|+..+-+-.- ...++...|+++|+.++.
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 88877754321 124899999999997664
No 126
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=49.75 E-value=1.6e+02 Score=26.14 Aligned_cols=28 Identities=11% Similarity=0.081 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEee
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQH 127 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh 127 (250)
..+.+.+.+.++..++ |+.+++.++.+-
T Consensus 163 gqt~~~~~~~l~~~~~-l~~~~is~y~l~ 190 (360)
T TIGR00539 163 LQTLNSLKEELKLAKE-LPINHLSAYALS 190 (360)
T ss_pred CCCHHHHHHHHHHHHc-cCCCEEEeecce
Confidence 3466777776666553 777777776543
No 127
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=49.71 E-value=2e+02 Score=26.05 Aligned_cols=140 Identities=12% Similarity=0.105 Sum_probs=68.6
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCC-----CCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGG-----MRERVELATKFGISFADGGKIRGDPAYVRACCE 110 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~-----~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~ 110 (250)
...+..+.|+.++++|+- ...|++..--..+-.+.++. +.+.++++.- +...+.
T Consensus 39 ~pp~i~~Al~~rvdhGvf----GY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~-----------------VVpgi~ 97 (388)
T COG1168 39 TPPEIIEALRERVDHGVF----GYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPG-----------------VVPGIS 97 (388)
T ss_pred CCHHHHHHHHHHHhcCCC----CCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCc-----------------chHhHH
Confidence 346788999999999853 33455311123344454442 2333333222 223445
Q ss_pred HHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCc-ceE----ecCcc--cHHHHHHHhhcCCceEEeeecCcC
Q 025575 111 ASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI-KYI----GLSEA--CAATIRRAHAVHPITAVQLEWSLW 183 (250)
Q Consensus 111 ~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i-r~i----GvSn~--~~~~l~~~~~~~~~~~~q~~~n~~ 183 (250)
..++.|- +.=|-+.++.|-.. |...+. +..|+- -.. +=..| +.+++++++..... ...+-+||-
T Consensus 98 ~~I~~~T-~~gd~Vvi~tPvY~-PF~~~i------~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~v-kl~iLCnPH 168 (388)
T COG1168 98 LAIRALT-KPGDGVVIQTPVYP-PFYNAI------KLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERV-KLFILCNPH 168 (388)
T ss_pred HHHHHhC-cCCCeeEecCCCch-HHHHHH------hhcCcEEEeccccccCCcEEecHHHHHHHHhcCCc-cEEEEeCCC
Confidence 5555552 45577788877331 111111 111110 000 11112 45566665544321 122334444
Q ss_pred CcC-------chhhhHHHHHHhCCeEEEe
Q 025575 184 SRD-------VEAEIVPTCRELGIGIVAY 205 (250)
Q Consensus 184 ~~~-------~~~~~~~~~~~~gi~via~ 205 (250)
++. ...++.+.|++|||.||+=
T Consensus 169 NP~Grvwt~eeL~~i~elc~kh~v~VISD 197 (388)
T COG1168 169 NPTGRVWTKEELRKIAELCLRHGVRVISD 197 (388)
T ss_pred CCCCccccHHHHHHHHHHHHHcCCEEEee
Confidence 431 1147999999999999973
No 128
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=49.62 E-value=1.2e+02 Score=25.05 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcC-CCChH---HHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYG-PYTNE---ILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-~g~sE---~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~ 111 (250)
++++...+.+.|.+.|..|+=|+.-|+ .|.+. +++.+.++. + +-.|...- -.+.+...+-++.
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~----~--v~IKaaGG-------irt~~~a~~~i~a 196 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGD----T--IGVKASGG-------VRTAEDAIAMIEA 196 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhcc----C--CeEEEeCC-------CCCHHHHHHHHHH
Confidence 557788999999999999999998886 33333 334444432 2 33343211 1267888888888
Q ss_pred HHHHcCCCc
Q 025575 112 SLKRLDIDC 120 (250)
Q Consensus 112 sL~~L~~d~ 120 (250)
--.|+|++.
T Consensus 197 Ga~riGts~ 205 (211)
T TIGR00126 197 GASRIGASA 205 (211)
T ss_pred hhHHhCcch
Confidence 888998864
No 129
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=49.45 E-value=1.4e+02 Score=25.19 Aligned_cols=110 Identities=18% Similarity=0.085 Sum_probs=60.8
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHH---------------------HHHhcCCCCCCEEEEeeeCcccC
Q 025575 35 EPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILV---------------------GKALKGGMRERVELATKFGISFA 93 (250)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~l---------------------g~~l~~~~R~~~~i~tK~~~~~~ 93 (250)
.+.++..++.+.|-+.||.|+=|.-.-. +-..+ -..-+ ....++|+|-..
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~---s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~--tgkPvIlSTG~s---- 123 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE---SVDFLEELGVPAYKIASGDLTNLPLLEYIAK--TGKPVILSTGMS---- 123 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH---HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT--T-S-EEEE-TT-----
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH---HHHHHHHcCCCEEEeccccccCHHHHHHHHH--hCCcEEEECCCC----
Confidence 3678899999999999999997765432 22222 11111 345566666533
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCC-CCCHHH-HHHHHHHHHHcCCcceEecCcccHHHH
Q 025575 94 DGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT-KIPIEV-TIGELKKLVEEGKIKYIGLSEACAATI 164 (250)
Q Consensus 94 ~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-~~~~~~-~~~~l~~l~~~G~ir~iGvSn~~~~~l 164 (250)
+-+.|+++++...++- ..++.++|+... ..+.++ -+..|..|++.=- --||.|.|+....
T Consensus 124 -------tl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~~ 185 (241)
T PF03102_consen 124 -------TLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDGIE 185 (241)
T ss_dssp --------HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSSSH
T ss_pred -------CHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCCcH
Confidence 4567777766654444 468999998743 233433 4677777775533 5789999976543
No 130
>PTZ00413 lipoate synthase; Provisional
Probab=49.44 E-value=2.1e+02 Score=26.11 Aligned_cols=160 Identities=17% Similarity=0.213 Sum_probs=82.6
Q ss_pred CCChHHHHHHHHHHHHcCCCeEeCcCCcCC----CChHHHHHHHhcCCC--CCCEEEEeeeCcccCCCCCCCCCHHHHHH
Q 025575 34 PEPEPDMIALIHHAINSGITLLDTSDIYGP----YTNEILVGKALKGGM--RERVELATKFGISFADGGKIRGDPAYVRA 107 (250)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~----g~sE~~lg~~l~~~~--R~~~~i~tK~~~~~~~~~~~~~~~~~i~~ 107 (250)
..+.++..++-+.+.+.|++|+=.+...++ |..+ .+.++++... ..++-|..=++-. ..+.+.+
T Consensus 176 ~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~-~~a~~I~~Ir~~~p~~~IevligDf-------~g~~e~l-- 245 (398)
T PTZ00413 176 PLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGAS-HVARCVELIKESNPELLLEALVGDF-------HGDLKSV-- 245 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHH-HHHHHHHHHHccCCCCeEEEcCCcc-------ccCHHHH--
Confidence 347788888888888999987654444442 2233 3444554432 1244444443311 1133222
Q ss_pred HHHHHHHHcCCCcccEEEeecCCC-----------CCCHHHHHHHHHHHHHc--CCcc-----eEecCcccHHHHHHHhh
Q 025575 108 CCEASLKRLDIDCIDLYYQHRVDT-----------KIPIEVTIGELKKLVEE--GKIK-----YIGLSEACAATIRRAHA 169 (250)
Q Consensus 108 ~l~~sL~~L~~d~iDl~~lh~p~~-----------~~~~~~~~~~l~~l~~~--G~ir-----~iGvSn~~~~~l~~~~~ 169 (250)
+.|.---+|.| -|+.+. ...+++.|+.|+.+++. +.|. -+|+..- .+++.+++.
T Consensus 246 ------~~L~eAG~dvy-nHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET-~eEvie~m~ 317 (398)
T PTZ00413 246 ------EKLANSPLSVY-AHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGET-EEEVRQTLR 317 (398)
T ss_pred ------HHHHhcCCCEE-ecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCC-HHHHHHHHH
Confidence 22322234444 355422 23577889999988874 3332 2454443 333333322
Q ss_pred -c--CCceEEee-ec-------CcCC----cCchhhhHHHHHHhCCeEEEeccCccC
Q 025575 170 -V--HPITAVQL-EW-------SLWS----RDVEAEIVPTCRELGIGIVAYGPLGQG 211 (250)
Q Consensus 170 -~--~~~~~~q~-~~-------n~~~----~~~~~~~~~~~~~~gi~via~spl~~G 211 (250)
. ..++++.+ +| .+.. +...+.+-+.+.+.|...++.+||..-
T Consensus 318 dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVRS 374 (398)
T PTZ00413 318 DLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVRS 374 (398)
T ss_pred HHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCcccc
Confidence 2 22333222 11 1111 112247778888999999999999654
No 131
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=48.68 E-value=2.1e+02 Score=25.96 Aligned_cols=87 Identities=10% Similarity=0.004 Sum_probs=54.0
Q ss_pred cEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhc-CCceEEeeecCcCCcCc-hhhhHHHHHHhC
Q 025575 122 DLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV-HPITAVQLEWSLWSRDV-EAEIVPTCRELG 199 (250)
Q Consensus 122 Dl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~g 199 (250)
|-+++..|.. ..++..++.+.+.+.++.+-+...+.+.+++++.. .++.++..+-||.-... ..++.+.|+++|
T Consensus 100 D~Vvv~~p~Y----~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~g 175 (405)
T PRK08776 100 DTLVVPHDAY----GGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVG 175 (405)
T ss_pred CEEEEccCCc----hHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcC
Confidence 5566654432 34555555655555566666655577888777643 34445555666654322 258999999999
Q ss_pred CeEEEeccCccCc
Q 025575 200 IGIVAYGPLGQGF 212 (250)
Q Consensus 200 i~via~spl~~G~ 212 (250)
+.++.=...+.+.
T Consensus 176 i~vIvD~a~a~~~ 188 (405)
T PRK08776 176 ALTVVDNTFLSPA 188 (405)
T ss_pred CEEEEECCCcccc
Confidence 9999766665443
No 132
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=48.07 E-value=87 Score=22.75 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=38.3
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCcc
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGIS 91 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~ 91 (250)
|........--++++|--|+-|-..|.-| .|.++---|-+ ..+++++++|+.+-
T Consensus 18 D~a~LYsaYMpfl~nGglFVpTnk~y~iG-~evfl~l~lld-~pekl~vagkVaWi 71 (117)
T COG3215 18 DMALLYSAYMPFLENGGLFVPTNKVYSIG-EEVFLLLELLD-FPEKLPVAGKVAWI 71 (117)
T ss_pred hHHHHHHHHhHHHhcCcEEcccCCccccc-hhhhhhhhhcC-chhhccccceEEEE
Confidence 34445566666789999999999999765 55555544443 45789999998643
No 133
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=47.90 E-value=1.5e+02 Score=26.55 Aligned_cols=83 Identities=10% Similarity=0.049 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHHc-CC---cceEecC--cccHHHHHHHhhc---CCceEEeeecCcCCc-----Cch---hhhHHH
Q 025575 132 KIPIEVTIGELKKLVEE-GK---IKYIGLS--EACAATIRRAHAV---HPITAVQLEWSLWSR-----DVE---AEIVPT 194 (250)
Q Consensus 132 ~~~~~~~~~~l~~l~~~-G~---ir~iGvS--n~~~~~l~~~~~~---~~~~~~q~~~n~~~~-----~~~---~~~~~~ 194 (250)
..+++++.+++.++.+. |+ +-++=+. |-+.+++.++.+. .+..++-++||+... ... ....+.
T Consensus 222 ~~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~ 301 (344)
T PRK14464 222 RIAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARY 301 (344)
T ss_pred CCCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHH
Confidence 34678888888877654 32 1233222 5677777666554 456788889998543 122 356677
Q ss_pred HHHhCCeEEEeccCc------cCcCC
Q 025575 195 CRELGIGIVAYGPLG------QGFLS 214 (250)
Q Consensus 195 ~~~~gi~via~spl~------~G~L~ 214 (250)
.+++||.+....+.+ +|.|.
T Consensus 302 L~~~gi~~tiR~~~G~di~aACGqL~ 327 (344)
T PRK14464 302 LHRRGVLTKVRNSAGQDVDGGCGQLR 327 (344)
T ss_pred HHHCCceEEEECCCCCchhhcCcchh
Confidence 788999999988874 67776
No 134
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=47.64 E-value=9.7 Score=34.13 Aligned_cols=156 Identities=17% Similarity=0.070 Sum_probs=71.9
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHH---HHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVG---KALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEAS 112 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg---~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~s 112 (250)
+.++..+.++.|.+.|+..+-|+-+...+..+..+. +.++......+.|+.=+.+..-.. ...+++.+ ..
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~--lg~~~~dl-----~~ 84 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKK--LGISYDDL-----SF 84 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHT--TT-BTTBT-----HH
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHH--cCCCHHHH-----HH
Confidence 578899999999999999999998875432232222 222222445566655554321000 00111111 12
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhcCC-ceEEeeecCcCCcCch---
Q 025575 113 LKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHP-ITAVQLEWSLWSRDVE--- 188 (250)
Q Consensus 113 L~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~-~~~~q~~~n~~~~~~~--- 188 (250)
++.||++. += .|..... +.+.+|-++|.--.+=.|+.+.+.+..+++... ++-+..-.| +.+.++
T Consensus 85 ~~~lGi~~---lR---lD~Gf~~----~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HN-fYPr~~TGL 153 (357)
T PF05913_consen 85 FKELGIDG---LR---LDYGFSG----EEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHN-FYPRPYTGL 153 (357)
T ss_dssp HHHHT-SE---EE---ESSS-SC----HHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE----B-STT-SB
T ss_pred HHHcCCCE---EE---ECCCCCH----HHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEec-ccCCCCCCC
Confidence 34455432 21 2333332 233344444665566778878888888877632 332222223 233222
Q ss_pred -----hhhHHHHHHhCCeEEEeccCc
Q 025575 189 -----AEIVPTCRELGIGIVAYGPLG 209 (250)
Q Consensus 189 -----~~~~~~~~~~gi~via~spl~ 209 (250)
.+.=.+.++.|+.+.|+-|--
T Consensus 154 s~~~f~~~n~~~k~~gi~~~AFI~g~ 179 (357)
T PF05913_consen 154 SEEFFIEKNQLLKEYGIKTAAFIPGD 179 (357)
T ss_dssp -HHHHHHHHHHHHHTT-EEEEEE--S
T ss_pred CHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 356677889999999988765
No 135
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=47.43 E-value=74 Score=22.05 Aligned_cols=61 Identities=10% Similarity=-0.051 Sum_probs=37.8
Q ss_pred CCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC-CcceEecCcc-cHHHHHHHhhcCCceEEeeec
Q 025575 117 DIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG-KIKYIGLSEA-CAATIRRAHAVHPITAVQLEW 180 (250)
Q Consensus 117 ~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G-~ir~iGvSn~-~~~~l~~~~~~~~~~~~q~~~ 180 (250)
....+|++++....+..... +.++.+++.+ .++-|-+++. +.....++++.+-..++.-++
T Consensus 40 ~~~~~d~iiid~~~~~~~~~---~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~ 102 (112)
T PF00072_consen 40 KKHPPDLIIIDLELPDGDGL---ELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPF 102 (112)
T ss_dssp HHSTESEEEEESSSSSSBHH---HHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSS
T ss_pred cccCceEEEEEeeecccccc---ccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCC
Confidence 33459999998765555444 4445555555 7788888865 556677777665444444433
No 136
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=47.27 E-value=1.1e+02 Score=25.82 Aligned_cols=84 Identities=19% Similarity=0.115 Sum_probs=53.8
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhcCCceEEeeecCcCCc-CchhhhHHHHHHhC
Q 025575 121 IDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELG 199 (250)
Q Consensus 121 iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~g 199 (250)
.++.++..|-+ .+.++.+.++. .+.=-..|=|-++...+.++++...++++|+.....-. ..-.++.+.|+++|
T Consensus 153 ~~i~~iEqP~~----~~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~g 227 (263)
T cd03320 153 GRIEYIEQPLP----PDDLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARG 227 (263)
T ss_pred cCCceEECCCC----hHHHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcC
Confidence 45556666543 23456666665 22223455556677778888887778898887664322 11258999999999
Q ss_pred CeEEEeccCc
Q 025575 200 IGIVAYGPLG 209 (250)
Q Consensus 200 i~via~spl~ 209 (250)
+.++..+-+.
T Consensus 228 i~~~~~~~~e 237 (263)
T cd03320 228 IPAVVSSALE 237 (263)
T ss_pred CCEEEEcchh
Confidence 9998754443
No 137
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=46.98 E-value=69 Score=26.23 Aligned_cols=60 Identities=10% Similarity=0.169 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCcceEecCcc-cHHHHHHHhhcCCceEEeeecCcCCcCchhhhHHHHHHhCCeEEE
Q 025575 138 TIGELKKLVEEGKIKYIGLSEA-CAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVA 204 (250)
Q Consensus 138 ~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via 204 (250)
..+.+++++++..=-.||..+. +.++++++++.+- |.-.+|.. ..+++++|+++||.++.
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA----~FivSP~~---~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS----RFIVSPGT---TQELLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC----CEEECCCC---CHHHHHHHHHcCCCEeC
Confidence 4555666665533346888775 7888888877632 12234433 36899999999998883
No 138
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=46.58 E-value=1.8e+02 Score=24.69 Aligned_cols=103 Identities=12% Similarity=0.146 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCC------CHHHHHHHHHHHHHcCCcceEecCccc---HHHHHHHhh
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI------PIEVTIGELKKLVEEGKIKYIGLSEAC---AATIRRAHA 169 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~------~~~~~~~~l~~l~~~G~ir~iGvSn~~---~~~l~~~~~ 169 (250)
.++.+.. ..+-+.|.++|+++|++=+........ ...+.++.+..+.+ +..+-.+++... .+.+..+.+
T Consensus 16 ~f~~~~~-~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 16 DFGDEFV-KAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASG 93 (266)
T ss_pred cCCHHHH-HHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhc
Confidence 4455554 456667999999999987654432110 11345555555443 235555555433 455555443
Q ss_pred cCCceEEeeecCcCCcCchhhhHHHHHHhCCeEEE
Q 025575 170 VHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVA 204 (250)
Q Consensus 170 ~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via 204 (250)
. .++.+.+.+..-....-.+.++.++++|+.|..
T Consensus 94 ~-gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~ 127 (266)
T cd07944 94 S-VVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFF 127 (266)
T ss_pred C-CcCEEEEecccccHHHHHHHHHHHHHCCCeEEE
Confidence 3 244444443332222224778888888876664
No 139
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=46.51 E-value=1.4e+02 Score=26.91 Aligned_cols=77 Identities=10% Similarity=0.144 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHH-HHcCC---cceEecC--cccHHHHHHHhhc---CCceEEeeecCcCCcCc--------hhhhHHHH
Q 025575 133 IPIEVTIGELKKL-VEEGK---IKYIGLS--EACAATIRRAHAV---HPITAVQLEWSLWSRDV--------EAEIVPTC 195 (250)
Q Consensus 133 ~~~~~~~~~l~~l-~~~G~---ir~iGvS--n~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~--------~~~~~~~~ 195 (250)
.+++++++++.+. .+.|+ |+++=+. |.+.+++.++.+. .+..++-++||++.... .....+.+
T Consensus 259 ~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L 338 (368)
T PRK14456 259 YPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTRERFRDRL 338 (368)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHHHHHHHHH
Confidence 3678888888764 44552 3444444 3455555554443 45678888999875421 13677778
Q ss_pred HHhCCeEEEeccCc
Q 025575 196 RELGIGIVAYGPLG 209 (250)
Q Consensus 196 ~~~gi~via~spl~ 209 (250)
+++|+.|....+.+
T Consensus 339 ~~~Gi~vtvR~~~G 352 (368)
T PRK14456 339 LDAGLQVTVRKSYG 352 (368)
T ss_pred HHCCCcEEeeCCCC
Confidence 89999999988775
No 140
>PLN02438 inositol-3-phosphate synthase
Probab=46.34 E-value=1.3e+02 Score=28.28 Aligned_cols=50 Identities=10% Similarity=0.115 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeecCCCCC----CHHHHHHHHHHHHHcCCc
Q 025575 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKI----PIEVTIGELKKLVEEGKI 151 (250)
Q Consensus 102 ~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~----~~~~~~~~l~~l~~~G~i 151 (250)
-+.|++.+++-.++-++|.+=++..-+-++.. +..+++++|++..+++.-
T Consensus 206 ve~ir~DIr~Fk~~n~ld~vVVlwtAsTEr~~~~~~~~~~t~~~l~~ai~~~~~ 259 (510)
T PLN02438 206 MDQIRKDIREFKEKNKVDKVVVLWTANTERYSNVVVGLNDTMENLLASIEKDEA 259 (510)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcCCCcccCCHHHHHHHHhcCCC
Confidence 46677777888888888886666666555443 334788999999888753
No 141
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=46.16 E-value=99 Score=28.41 Aligned_cols=88 Identities=13% Similarity=0.144 Sum_probs=54.7
Q ss_pred HHHcCCCcccEEEeecCCC-CCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhc--------CCceEEeeecCcC
Q 025575 113 LKRLDIDCIDLYYQHRVDT-KIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV--------HPITAVQLEWSLW 183 (250)
Q Consensus 113 L~~L~~d~iDl~~lh~p~~-~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~--------~~~~~~q~~~n~~ 183 (250)
++.||++|. ++..|-. ... ..+-...+-+.|-+..+|..+.+++++++.+.. .|+-+|-+ .++-
T Consensus 7 ~~~lgiryP---ii~gpMa~Gis---s~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~ 79 (418)
T cd04742 7 KEDYGLRYA---YVAGAMARGIA---SAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPD 79 (418)
T ss_pred HHHhCCCcc---EECCcccCCCC---CHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCC
Confidence 455776654 3333332 111 223344566789999999999999988776543 24555443 2333
Q ss_pred CcCchhhhHHHHHHhCCeEEEecc
Q 025575 184 SRDVEAEIVPTCRELGIGIVAYGP 207 (250)
Q Consensus 184 ~~~~~~~~~~~~~~~gi~via~sp 207 (250)
.+..+..+++.|.++||.++.-+.
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEecc
Confidence 333345799999999999886654
No 142
>PLN02389 biotin synthase
Probab=46.10 E-value=2.3e+02 Score=25.64 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=54.1
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCcCCc-CCCC---hHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHH
Q 025575 35 EPEPDMIALIHHAINSGITLLDTSDIY-GPYT---NEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCE 110 (250)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Y-g~g~---sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~ 110 (250)
.+.+++.+.++.+.+.|++.|--.... +.+. .-..+-+.++..+...+.|....+. .+.+.+
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~---------l~~E~l----- 181 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGM---------LEKEQA----- 181 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCC---------CCHHHH-----
Confidence 367888888888889999977432111 1111 1234444555433233445433332 233333
Q ss_pred HHHHHcCCCcccEEEeec-C------CCCCCHHHHHHHHHHHHHcCC
Q 025575 111 ASLKRLDIDCIDLYYQHR-V------DTKIPIEVTIGELKKLVEEGK 150 (250)
Q Consensus 111 ~sL~~L~~d~iDl~~lh~-p------~~~~~~~~~~~~l~~l~~~G~ 150 (250)
+.|+..|+|.+-+-+ .. + -....+++.++.++.+++.|.
T Consensus 182 ~~LkeAGld~~~~~L-eTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 182 AQLKEAGLTAYNHNL-DTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHHHHcCCCEEEeee-cCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 234445766543321 11 1 012356788999999999985
No 143
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=46.07 E-value=2.5e+02 Score=26.01 Aligned_cols=111 Identities=14% Similarity=0.011 Sum_probs=69.5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEeecCC-CCCCHHHHHHHHHHHHHcCCcceEecCccc---HHHHHHHhhcCCc
Q 025575 98 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVD-TKIPIEVTIGELKKLVEEGKIKYIGLSEAC---AATIRRAHAVHPI 173 (250)
Q Consensus 98 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~-~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~---~~~l~~~~~~~~~ 173 (250)
..++++.+.+.+++....+. .++.+-+-.|. +....+.+++.+..++++..=..+.+|+.. ++.++++.+.. +
T Consensus 58 ~~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~g-v 134 (442)
T TIGR01290 58 ELLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLG-V 134 (442)
T ss_pred ccCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCC-C
Confidence 35789999998888877662 35666666643 333445688899999988311256666543 57777776642 4
Q ss_pred eEEeeecCcCCcCch---------------------------hhhHHHHHHhCCeEEEeccCccC
Q 025575 174 TAVQLEWSLWSRDVE---------------------------AEIVPTCRELGIGIVAYGPLGQG 211 (250)
Q Consensus 174 ~~~q~~~n~~~~~~~---------------------------~~~~~~~~~~gi~via~spl~~G 211 (250)
+.+.+.++-.++..- .+-++.+.+.|+.+....++--|
T Consensus 135 d~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpG 199 (442)
T TIGR01290 135 GHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPG 199 (442)
T ss_pred CeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCC
Confidence 555555554432110 13356677889988777777655
No 144
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=45.96 E-value=1.6e+02 Score=23.91 Aligned_cols=133 Identities=10% Similarity=0.059 Sum_probs=72.4
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCc----------CCcCCC--ChHHHHHHHhcCCC-CCCEEEEeeeCcccCCCCCCCCCH
Q 025575 36 PEPDMIALIHHAINSGITLLDTS----------DIYGPY--TNEILVGKALKGGM-RERVELATKFGISFADGGKIRGDP 102 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg~g--~sE~~lg~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~ 102 (250)
+.++..+..+.+.+.|+..+|-- ..||.. ..-+.+-+.++... .-.+-|+.|+...+ ...
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~------~~~- 137 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGW------DDE- 137 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeecc------CCc-
Confidence 46778888888888999988853 235431 13344444444421 11145666664322 111
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeecCCCCC--CHHHHHHHHHHHHHcCCcceEecCcc-cHHHHHHHhhcCCceEEeee
Q 025575 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTKI--PIEVTIGELKKLVEEGKIKYIGLSEA-CAATIRRAHAVHPITAVQLE 179 (250)
Q Consensus 103 ~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~--~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~q~~ 179 (250)
+...+ +-+.|+..|+ |.+.+|...... .....|+.+.++++.-.+.-++.... +.+.+.++++....+.+++-
T Consensus 138 ~~~~~-~~~~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 138 EETLE-LAKALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred hHHHH-HHHHHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 12322 3334555665 555667543211 11124666677777666666666654 67777777766556666653
No 145
>PLN02428 lipoic acid synthase
Probab=45.89 E-value=1.7e+02 Score=26.15 Aligned_cols=158 Identities=14% Similarity=0.189 Sum_probs=83.3
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCc-C---CcCCCChHHHHHHHhcCCCC--CCEEEEeeeCcccCCCCCCCCCHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTS-D---IYGPYTNEILVGKALKGGMR--ERVELATKFGISFADGGKIRGDPAYVRACC 109 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA-~---~Yg~g~sE~~lg~~l~~~~R--~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l 109 (250)
+.++..++.+.+.+.|++++=-. . .|-++..+ .+.+.++...+ ..+.|.. +.+.. ..+
T Consensus 131 d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~-~~~elir~Ir~~~P~i~Ie~-L~pdf------~~d-------- 194 (349)
T PLN02428 131 DPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSG-HFAETVRRLKQLKPEILVEA-LVPDF------RGD-------- 194 (349)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHH-HHHHHHHHHHHhCCCcEEEE-eCccc------cCC--------
Confidence 45566778888888898755432 1 23333233 33334433211 1333322 11110 112
Q ss_pred HHHHHHcCCCcccEEEeecCCC-----------CCCHHHHHHHHHHHHHc--CCcc----eEecCcccHHHHHHHhhc--
Q 025575 110 EASLKRLDIDCIDLYYQHRVDT-----------KIPIEVTIGELKKLVEE--GKIK----YIGLSEACAATIRRAHAV-- 170 (250)
Q Consensus 110 ~~sL~~L~~d~iDl~~lh~p~~-----------~~~~~~~~~~l~~l~~~--G~ir----~iGvSn~~~~~l~~~~~~-- 170 (250)
++.|+.|.-.-+|.+ -|+++. ....++.++.|+.+++. |..- -+|+ .-+.+++.+.+..
T Consensus 195 ~elL~~L~eAG~d~i-~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~Lr 272 (349)
T PLN02428 195 LGAVETVATSGLDVF-AHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMEDLR 272 (349)
T ss_pred HHHHHHHHHcCCCEE-ccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHHHH
Confidence 223333322235663 466653 23457788999999987 7653 2466 4566666665433
Q ss_pred -CCceEEee-----------ecCcCCc-CchhhhHHHHHHhCCeEEEeccCccC
Q 025575 171 -HPITAVQL-----------EWSLWSR-DVEAEIVPTCRELGIGIVAYGPLGQG 211 (250)
Q Consensus 171 -~~~~~~q~-----------~~n~~~~-~~~~~~~~~~~~~gi~via~spl~~G 211 (250)
..++.+.+ +.+.+.. ...+.+-+.+.+.|...++.+||..-
T Consensus 273 elgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vrs 326 (349)
T PLN02428 273 AAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVRS 326 (349)
T ss_pred HcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCcccc
Confidence 33333322 2232222 22257888889999999999999643
No 146
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=45.27 E-value=1.8e+02 Score=24.29 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=28.3
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcCCC---ChHHHHHHHhc
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYGPY---TNEILVGKALK 75 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g---~sE~~lg~~l~ 75 (250)
+.++..++++.|.++||+-+=..++|-.| .++..+.+.+.
T Consensus 18 s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~ 60 (254)
T COG4464 18 SLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKAN 60 (254)
T ss_pred cHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHH
Confidence 67889999999999999966555555444 24555555544
No 147
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=44.90 E-value=84 Score=25.08 Aligned_cols=96 Identities=11% Similarity=0.044 Sum_probs=64.2
Q ss_pred HcCCCeEeCcC--------CcCCCChHHHHHHHhcCCCCCCEEEEeeeCcccCCC----CCCCCCHHHHHHHHHHHHHHc
Q 025575 49 NSGITLLDTSD--------IYGPYTNEILVGKALKGGMRERVELATKFGISFADG----GKIRGDPAYVRACCEASLKRL 116 (250)
Q Consensus 49 ~~Gi~~~DtA~--------~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~----~~~~~~~~~i~~~l~~sL~~L 116 (250)
..+|-++||-. .|- |+.+..+-..|.+ .|=++.|.++---.|.++ .....++..+.+-+++.|++-
T Consensus 78 a~~v~fiDTD~itT~~~~~~y~-gr~~P~~~~~i~~-~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~ 155 (187)
T COG3172 78 ANKVAFIDTDFLTTQAFCKKYE-GREHPFLQALIAE-YRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEEN 155 (187)
T ss_pred CCceEEEeccHHHHHHHHHHHc-ccCCchHHHHHhh-cccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHh
Confidence 35999999954 332 3345566667766 777888877754444333 223346888888899999998
Q ss_pred CCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC
Q 025575 117 DIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG 149 (250)
Q Consensus 117 ~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G 149 (250)
+..| +.|..++.........++.+++..++
T Consensus 156 ~~~~---v~i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 156 NIPF---VVIEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred CCcE---EEEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 7665 44566655555667788888887765
No 148
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=44.88 E-value=1.6e+02 Score=26.82 Aligned_cols=68 Identities=15% Similarity=0.064 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCCc--c-eEecCcccHHHHHHHhhcCCceEEeeecCcCCc-CchhhhHHHHHHhCCeEEEe
Q 025575 138 TIGELKKLVEEGKI--K-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAY 205 (250)
Q Consensus 138 ~~~~l~~l~~~G~i--r-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~ 205 (250)
-++.+.+|++.-.+ . .-|-+.++...+..+++....+++|....-.-. ....++.+.|+.+|+.++..
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 46777788776542 2 236777889999999988888999987665432 11248999999999998864
No 149
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=44.83 E-value=1.3e+02 Score=23.77 Aligned_cols=72 Identities=21% Similarity=0.133 Sum_probs=42.8
Q ss_pred eecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhcCCceEEeeecCcCCcC---------chhhhHHHHH
Q 025575 126 QHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD---------VEAEIVPTCR 196 (250)
Q Consensus 126 lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~---------~~~~~~~~~~ 196 (250)
+|-+..+.+..+.. .+. +.=..||+|.++.++++++.+... ++ +-++++... ..+.+-++++
T Consensus 76 vHl~~~~~~~~~~r----~~~--~~~~~ig~S~h~~~e~~~a~~~g~-dY--v~~gpvf~T~sk~~~~~~g~~~l~~~~~ 146 (180)
T PF02581_consen 76 VHLGQSDLPPAEAR----KLL--GPDKIIGASCHSLEEAREAEELGA-DY--VFLGPVFPTSSKPGAPPLGLDGLREIAR 146 (180)
T ss_dssp EEEBTTSSSHHHHH----HHH--TTTSEEEEEESSHHHHHHHHHCTT-SE--EEEETSS--SSSSS-TTCHHHHHHHHHH
T ss_pred EEecccccchHHhh----hhc--ccceEEEeecCcHHHHHHhhhcCC-CE--EEECCccCCCCCccccccCHHHHHHHHH
Confidence 56665555443322 222 334579999999999888765422 33 223444321 1146777888
Q ss_pred HhCCeEEEec
Q 025575 197 ELGIGIVAYG 206 (250)
Q Consensus 197 ~~gi~via~s 206 (250)
...++|+|.+
T Consensus 147 ~~~~pv~AlG 156 (180)
T PF02581_consen 147 ASPIPVYALG 156 (180)
T ss_dssp HTSSCEEEES
T ss_pred hCCCCEEEEc
Confidence 8889999764
No 150
>PLN02775 Probable dihydrodipicolinate reductase
Probab=44.62 E-value=1.7e+02 Score=25.38 Aligned_cols=58 Identities=10% Similarity=0.041 Sum_probs=41.1
Q ss_pred HHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhc
Q 025575 109 CEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 170 (250)
Q Consensus 109 l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 170 (250)
+++.|..+.-++.|++++..- ..+.+.+.++.+.+.|+--=+|.+.|+.+++.++.+.
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT----~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~ 125 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYT----LPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEE 125 (286)
T ss_pred HHHHHHHhhccCCCEEEEECC----ChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhc
Confidence 344454444457898888763 3456778888888888888888888888887766554
No 151
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=44.17 E-value=74 Score=26.12 Aligned_cols=88 Identities=16% Similarity=0.174 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcc-cHHHHHHHhhcCCceEEeee
Q 025575 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEA-CAATIRRAHAVHPITAVQLE 179 (250)
Q Consensus 101 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~q~~ 179 (250)
+++...+ +-+.|-.-|+..+-+=+ +. ...++.+++++++..=-.||..+. +.++++++++.+- +++
T Consensus 18 ~~e~a~~-~~~al~~~Gi~~iEit~-~t-------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA-~Fi--- 84 (204)
T TIGR01182 18 DVDDALP-LAKALIEGGLRVLEVTL-RT-------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA-QFI--- 84 (204)
T ss_pred CHHHHHH-HHHHHHHcCCCEEEEeC-CC-------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-CEE---
Confidence 4444433 44555566765444332 11 245566666666543356888875 8889988887642 111
Q ss_pred cCcCCcCchhhhHHHHHHhCCeEEE
Q 025575 180 WSLWSRDVEAEIVPTCRELGIGIVA 204 (250)
Q Consensus 180 ~n~~~~~~~~~~~~~~~~~gi~via 204 (250)
.+|.. ..+++++|+++||.++.
T Consensus 85 vsP~~---~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 VSPGL---TPELAKHAQDHGIPIIP 106 (204)
T ss_pred ECCCC---CHHHHHHHHHcCCcEEC
Confidence 33433 36999999999998884
No 152
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=43.30 E-value=1.9e+02 Score=23.93 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHcCCCeEeCcCCcCCC-ChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHH
Q 025575 37 EPDMIALIHHAINSGITLLDTSDIYGPY-TNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (250)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g-~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~ 115 (250)
.....+++..|.+.|+..+=.+++.... .... ....+. ++-|-+-+-.. ...++.+..-++ +
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~-~~~~~~-----~i~Il~GiEi~-------~~~~~~~~~~~~----~ 77 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSDKYPESKP-ELEDLL-----GFEIFRGVEIV-------ASNPSKLRGLVG----K 77 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcccccchhH-HHHHhc-----CCcEEeeEEEe-------cCCHHHHHHHHH----h
Confidence 4568899999999999977666654210 0111 112221 23332222111 123444433333 3
Q ss_pred cCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcc-------cHHHHHHHhhcCCceEEeeecCcCCcC--
Q 025575 116 LDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEA-------CAATIRRAHAVHPITAVQLEWSLWSRD-- 186 (250)
Q Consensus 116 L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~-------~~~~l~~~~~~~~~~~~q~~~n~~~~~-- 186 (250)
. ...+|++.+| |.. +++ ...+.+.+.|.-||-... ....+..+.+.. ..+.+.++++...
T Consensus 78 ~-~~~~d~v~v~-~~~----~~~---~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~g--v~lEIn~s~~~~~~~ 146 (237)
T PRK00912 78 F-RKKVDVLAVH-GGD----EKV---NRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNN--VAIEFNLRDILKSRG 146 (237)
T ss_pred c-cCcccEEEEe-CCC----HHH---HHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCC--eEEEEEchHhhhhcc
Confidence 2 1357888888 222 122 235778888887775432 222333333333 2445556554221
Q ss_pred --------chhhhHHHHHHhCCeEEE
Q 025575 187 --------VEAEIVPTCRELGIGIVA 204 (250)
Q Consensus 187 --------~~~~~~~~~~~~gi~via 204 (250)
....++..|++.|+.++.
T Consensus 147 ~~r~~~~~~~~~~~~~~~~~g~piii 172 (237)
T PRK00912 147 GRRARTLSNFRDNLALARKYDFPLVL 172 (237)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 114799999999988874
No 153
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=43.08 E-value=1.7e+02 Score=23.56 Aligned_cols=41 Identities=15% Similarity=0.074 Sum_probs=25.7
Q ss_pred cccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHH
Q 025575 120 CIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATI 164 (250)
Q Consensus 120 ~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 164 (250)
.+|.++||..++ . +..+.+.+......++.+|++......+
T Consensus 73 ~~d~Vqlhg~e~---~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDES---P-EYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCCC---H-HHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 368899998642 2 2333443333346788999998765544
No 154
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.04 E-value=2e+02 Score=25.73 Aligned_cols=86 Identities=12% Similarity=0.125 Sum_probs=56.2
Q ss_pred EEeecCCCC-----------CCHHHHHHHHHHHHHcCC----cceEecC--cccHHHHHHHhhc---CCceEEeeecCcC
Q 025575 124 YYQHRVDTK-----------IPIEVTIGELKKLVEEGK----IKYIGLS--EACAATIRRAHAV---HPITAVQLEWSLW 183 (250)
Q Consensus 124 ~~lh~p~~~-----------~~~~~~~~~l~~l~~~G~----ir~iGvS--n~~~~~l~~~~~~---~~~~~~q~~~n~~ 183 (250)
+-||.+++. .++++++++++++.+.+. ++++=+. |-+.++++++.+. .+..++-++||++
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~ 302 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPV 302 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcC
Confidence 567777543 346889999998877542 3344343 4455666665443 4456788899987
Q ss_pred CcC-----ch---hhhHHHHHHhCCeEEEeccCc
Q 025575 184 SRD-----VE---AEIVPTCRELGIGIVAYGPLG 209 (250)
Q Consensus 184 ~~~-----~~---~~~~~~~~~~gi~via~spl~ 209 (250)
... .. ....+.++++|+.+....+.+
T Consensus 303 ~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g 336 (356)
T PRK14455 303 PERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHG 336 (356)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 531 11 256667889999999887764
No 155
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=42.91 E-value=3.5e+02 Score=26.90 Aligned_cols=119 Identities=14% Similarity=0.091 Sum_probs=65.3
Q ss_pred CCCEEEEeeeCcc-cCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCC----CH--HHHHHHHHHHHHcCCc
Q 025575 79 RERVELATKFGIS-FADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI----PI--EVTIGELKKLVEEGKI 151 (250)
Q Consensus 79 R~~~~i~tK~~~~-~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~----~~--~~~~~~l~~l~~~G~i 151 (250)
.+++-|..|+... +.. ...+.+... .+-+.|+..|+|+||+ |...... .. .-......++++.=++
T Consensus 616 ~~~~~v~~ri~~~~~~~---~g~~~~~~~-~~~~~l~~~g~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~ 688 (765)
T PRK08255 616 PAEKPMSVRISAHDWVE---GGNTPDDAV-EIARAFKAAGADLIDV---SSGQVSKDEKPVYGRMYQTPFADRIRNEAGI 688 (765)
T ss_pred CCCCeeEEEEccccccC---CCCCHHHHH-HHHHHHHhcCCcEEEe---CCCCCCcCCCCCcCccccHHHHHHHHHHcCC
Confidence 4577888998753 111 134455443 3445567788766654 4221100 00 0011223455665566
Q ss_pred ceEecCcc-cHHHHHHHhhcCCceEEeeecC-cCCcCchhhhHHHHHHhCCeEEEecc
Q 025575 152 KYIGLSEA-CAATIRRAHAVHPITAVQLEWS-LWSRDVEAEIVPTCRELGIGIVAYGP 207 (250)
Q Consensus 152 r~iGvSn~-~~~~l~~~~~~~~~~~~q~~~n-~~~~~~~~~~~~~~~~~gi~via~sp 207 (250)
--|++.+. +++.++++++....|.+.+-=. +.++ +=+...+++.++.-+.+.+
T Consensus 689 pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP---~~~~~~~~~~~~~~~~~~~ 743 (765)
T PRK08255 689 ATIAVGAISEADHVNSIIAAGRADLCALARPHLADP---AWTLHEAAEIGYRDVAWPK 743 (765)
T ss_pred EEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCc---cHHHHHHHHcCCCCCCCch
Confidence 67777776 7888999998877777665211 2222 2456667777776344433
No 156
>PTZ00081 enolase; Provisional
Probab=42.73 E-value=2.8e+02 Score=25.69 Aligned_cols=96 Identities=13% Similarity=0.054 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC--CcceEec--CcccHHHHHHHhhcCCceE
Q 025575 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG--KIKYIGL--SEACAATIRRAHAVHPITA 175 (250)
Q Consensus 100 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G--~ir~iGv--Sn~~~~~l~~~~~~~~~~~ 175 (250)
.+++.+.+-+.+.++.+ +++++..|-+. +-|+.+.+|.+.- .+.-+|= +..+++.+.++++....++
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl~~----~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPFDQ----DDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCCc----ccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 46666666666666655 45677766443 3466666776653 5655543 3456899999998888888
Q ss_pred EeeecCcCCc-CchhhhHHHHHHhCCeEEE
Q 025575 176 VQLEWSLWSR-DVEAEIVPTCRELGIGIVA 204 (250)
Q Consensus 176 ~q~~~n~~~~-~~~~~~~~~~~~~gi~via 204 (250)
+|+..|-+-. ....+++..|+++|+.++.
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 8888875432 1224899999999999886
No 157
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.62 E-value=2.5e+02 Score=25.41 Aligned_cols=90 Identities=13% Similarity=0.278 Sum_probs=55.3
Q ss_pred EeecCCCC-----------CCHHHHHHHHHHHHHcC-------CcceEecC--cccHHHHHHHhhc---CCceEEeeecC
Q 025575 125 YQHRVDTK-----------IPIEVTIGELKKLVEEG-------KIKYIGLS--EACAATIRRAHAV---HPITAVQLEWS 181 (250)
Q Consensus 125 ~lh~p~~~-----------~~~~~~~~~l~~l~~~G-------~ir~iGvS--n~~~~~l~~~~~~---~~~~~~q~~~n 181 (250)
.||.+++. .++++.++++.+..++- .|+++=+. |-+.++++++.+. .+..++-++||
T Consensus 221 SLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~~~VnLIPYN 300 (372)
T PRK11194 221 SLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWN 300 (372)
T ss_pred eccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEecCC
Confidence 38988653 24566776666655433 14555555 4456666655443 44578889999
Q ss_pred cCCcC----ch----hhhHHHHHHhCCeEEEeccC------ccCcCC
Q 025575 182 LWSRD----VE----AEIVPTCRELGIGIVAYGPL------GQGFLS 214 (250)
Q Consensus 182 ~~~~~----~~----~~~~~~~~~~gi~via~spl------~~G~L~ 214 (250)
++... +. ..+.+..+++|+.+....+. ++|.|.
T Consensus 301 ~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~di~aaCGQL~ 347 (372)
T PRK11194 301 PFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLA 347 (372)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEecCCCCcchhcCcCcH
Confidence 86531 11 24666777889999876554 356666
No 158
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=42.22 E-value=3e+02 Score=25.95 Aligned_cols=131 Identities=14% Similarity=0.146 Sum_probs=68.3
Q ss_pred hHHHHHHHhcCC----CCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCC----HHH
Q 025575 66 NEILVGKALKGG----MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP----IEV 137 (250)
Q Consensus 66 sE~~lg~~l~~~----~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~----~~~ 137 (250)
+|+.+-+++++. +.+-++|.+-.. ++-|-..++...+.++. -++++.++.|..... .+.
T Consensus 69 ~~ekL~~aI~~~~~~~~P~~I~V~sTC~------------seiIGdDi~~v~~~~~~-~~~Vi~v~t~gf~~~~~~G~~~ 135 (519)
T PRK02910 69 TAELLKDTLRRADERFQPDLIVVGPSCT------------AELLQEDLGGLAKHAGL-PIPVLPLELNAYRVKENWAADE 135 (519)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCcH------------HHHhccCHHHHHHHhCC-CCCEEEEecCCcccccchHHHH
Confidence 565666676654 233345554432 33344445555555554 367999998866543 222
Q ss_pred HHHHHH-HHH-----------HcCCcceEecCcc------cHHHHHHHhhcCCceEEee----------------ecCcC
Q 025575 138 TIGELK-KLV-----------EEGKIKYIGLSEA------CAATIRRAHAVHPITAVQL----------------EWSLW 183 (250)
Q Consensus 138 ~~~~l~-~l~-----------~~G~ir~iGvSn~------~~~~l~~~~~~~~~~~~q~----------------~~n~~ 183 (250)
++..+- .+. +.+.|.-||.++. +..++.++++...+.++.+ .+|+.
T Consensus 136 al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~~l~~A~~niv 215 (519)
T PRK02910 136 TFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLGASPADLKRLPAAWFNVV 215 (519)
T ss_pred HHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCcEEEE
Confidence 332222 121 2345888887642 3456777776655555443 12222
Q ss_pred -CcCchhhhHHHHH-HhCCeEEEeccCc
Q 025575 184 -SRDVEAEIVPTCR-ELGIGIVAYGPLG 209 (250)
Q Consensus 184 -~~~~~~~~~~~~~-~~gi~via~spl~ 209 (250)
.+.....+-++++ +.|++++...|++
T Consensus 216 l~~~~g~~~A~~Lee~fGiP~i~~~PiG 243 (519)
T PRK02910 216 LYREIGESAARYLEREFGQPYVKTVPIG 243 (519)
T ss_pred eCHHHHHHHHHHHHHHhCCccccccccc
Confidence 1111123444444 4589988777875
No 159
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=42.16 E-value=2.5e+02 Score=24.91 Aligned_cols=40 Identities=10% Similarity=0.033 Sum_probs=22.8
Q ss_pred HHHHHHHHHcCCcceEecCcc-cHHHHHHHhhcCCceEEee
Q 025575 139 IGELKKLVEEGKIKYIGLSEA-CAATIRRAHAVHPITAVQL 178 (250)
Q Consensus 139 ~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~q~ 178 (250)
|+....+++.=++--|++.+. +++.++++++....+.+.+
T Consensus 274 ~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 274 LPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred HHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeee
Confidence 444455555445555666653 6677777766655555443
No 160
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=42.06 E-value=2.5e+02 Score=25.01 Aligned_cols=136 Identities=12% Similarity=0.171 Sum_probs=81.4
Q ss_pred CceeecccccCCCCC----CCCChHHHHHHHHHHHHcC---CCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCc
Q 025575 18 SAQGLGCMAMSCLYG----PPEPEPDMIALIHHAINSG---ITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGI 90 (250)
Q Consensus 18 s~lglG~~~~g~~~~----~~~~~~~~~~~l~~A~~~G---i~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~ 90 (250)
..+|-=|.++-. |+ ...+.++..+++....+.- +-.+|..+..+. -...+-+.+. ...-++|.+|...
T Consensus 28 ~~~C~RC~~l~h-y~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s--~~~~l~~~~~--~~piilV~NK~DL 102 (360)
T TIGR03597 28 EVYCQRCFRLKH-YNEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGS--LIPELKRFVG--GNPVLLVGNKIDL 102 (360)
T ss_pred Ceeecchhhhhc-cCccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCC--ccHHHHHHhC--CCCEEEEEEchhh
Confidence 345555555421 22 2235556667666554321 236676554442 1222333332 4566889999875
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHH
Q 025575 91 SFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATI 164 (250)
Q Consensus 91 ~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 164 (250)
.. .....+.+.+.+++.++.++....|++++-.- ....++++++.+.++.+.+.+--+|.+|..-..+
T Consensus 103 l~-----k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk-~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 103 LP-----KSVNLSKIKEWMKKRAKELGLKPVDIILVSAK-KGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred CC-----CCCCHHHHHHHHHHHHHHcCCCcCcEEEecCC-CCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 32 13345667777777777787654566666543 3456888898888887667888999999976544
No 161
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=41.65 E-value=2.6e+02 Score=25.04 Aligned_cols=85 Identities=9% Similarity=0.144 Sum_probs=54.1
Q ss_pred EEeecCCCC-----------CCHHHHHHHHHHHHHcCCcceEec-------CcccHHHHHHHhh---cCCceEEeeecCc
Q 025575 124 YYQHRVDTK-----------IPIEVTIGELKKLVEEGKIKYIGL-------SEACAATIRRAHA---VHPITAVQLEWSL 182 (250)
Q Consensus 124 ~~lh~p~~~-----------~~~~~~~~~l~~l~~~G~ir~iGv-------Sn~~~~~l~~~~~---~~~~~~~q~~~n~ 182 (250)
+-||.|+.. .++++.+++.+...+... +.|-+ -|-+.++..++.+ -.+-.++-++|||
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np 294 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNP 294 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCC
Confidence 568998653 346777888777776544 33322 1444555555444 3555899999999
Q ss_pred CCcCc-----h---hhhHHHHHHhCCeEEEeccCc
Q 025575 183 WSRDV-----E---AEIVPTCRELGIGIVAYGPLG 209 (250)
Q Consensus 183 ~~~~~-----~---~~~~~~~~~~gi~via~spl~ 209 (250)
+.... . ....+..+++||.+....+-+
T Consensus 295 ~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g 329 (349)
T COG0820 295 VPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRG 329 (349)
T ss_pred CCCCCccCCcHHHHHHHHHHHHhCCeeEEeccccc
Confidence 86532 1 245566667889998877664
No 162
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=41.56 E-value=2.8e+02 Score=25.42 Aligned_cols=95 Identities=8% Similarity=0.041 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC--CcceEecCc--ccHHHHHHHhhcCCceEE
Q 025575 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG--KIKYIGLSE--ACAATIRRAHAVHPITAV 176 (250)
Q Consensus 101 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G--~ir~iGvSn--~~~~~l~~~~~~~~~~~~ 176 (250)
+++...+-+++.++. .++.++..|-+. +-|+.+.+|.+.- .+.-.|==. .+++.+.++++....+++
T Consensus 263 s~~eai~~~~~lle~-----~~i~~iEdPl~~----~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v 333 (425)
T TIGR01060 263 TSEEMIEYYKELVEK-----YPIVSIEDGLSE----EDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSI 333 (425)
T ss_pred CHHHHHHHHHHHHhc-----CCcEEEEcCCCc----ccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEE
Confidence 444444444444433 456777777543 3466677776654 554434222 258999999888888888
Q ss_pred eeecCcCCcC-chhhhHHHHHHhCCeEEE
Q 025575 177 QLEWSLWSRD-VEAEIVPTCRELGIGIVA 204 (250)
Q Consensus 177 q~~~n~~~~~-~~~~~~~~~~~~gi~via 204 (250)
|+..|-.-.- ...++.+.|+++|+.++.
T Consensus 334 ~ik~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 334 LIKPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred EecccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 8877754321 124899999999998654
No 163
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=41.18 E-value=2.4e+02 Score=25.15 Aligned_cols=28 Identities=11% Similarity=0.014 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEee
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQH 127 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh 127 (250)
..+.+.+++.++.. .+++.+++.+|.+-
T Consensus 166 gqt~e~~~~tl~~~-~~l~p~~is~y~L~ 193 (353)
T PRK05904 166 ILKLKDLDEVFNFI-LKHKINHISFYSLE 193 (353)
T ss_pred CCCHHHHHHHHHHH-HhcCCCEEEEEeeE
Confidence 45677777777754 45888888888665
No 164
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=41.06 E-value=2.2e+02 Score=26.46 Aligned_cols=98 Identities=11% Similarity=0.081 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCC------CHHHHHHHHHHHHHc-CCcc---------eEecCcccHHHH
Q 025575 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI------PIEVTIGELKKLVEE-GKIK---------YIGLSEACAATI 164 (250)
Q Consensus 101 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~------~~~~~~~~l~~l~~~-G~ir---------~iGvSn~~~~~l 164 (250)
+.+... .+-+.|.++|++.|.+. ..... .-++.|+.++.+++. ..++ .+|.+++..+.+
T Consensus 24 ~t~dkl-~ia~~Ld~~Gv~~IE~~----ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv 98 (448)
T PRK12331 24 TTEEML-PILEKLDNAGYHSLEMW----GGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVV 98 (448)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEec----CCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhH
Confidence 344443 35555788888888872 11100 011246667776665 2233 245666544433
Q ss_pred H----HHhhcCCceEEeeecCcCCcCchhhhHHHHHHhCCeEEE
Q 025575 165 R----RAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVA 204 (250)
Q Consensus 165 ~----~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via 204 (250)
. .+.+. .++++.+-.++-....-.+.+++++++|..+.+
T Consensus 99 ~~~v~~A~~~-Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 99 ESFVQKSVEN-GIDIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHHHHHC-CCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 3 33332 345555544333222224688888888876543
No 165
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=40.94 E-value=1.2e+02 Score=27.56 Aligned_cols=80 Identities=11% Similarity=0.024 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhc-CCceEEeeecCcCCcCch-hhhHHHHHHhC-CeEEEeccCccC
Q 025575 135 IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV-HPITAVQLEWSLWSRDVE-AEIVPTCRELG-IGIVAYGPLGQG 211 (250)
Q Consensus 135 ~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~g-i~via~spl~~G 211 (250)
...+.+.++++....-|...=+-..+.+.++++++. .+..+++.+-||...-.+ ..+.+.|+++| +.++.=+.++.+
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 446677777655555555444444567777777654 456677888888766433 58999999999 999999999888
Q ss_pred cCC
Q 025575 212 FLS 214 (250)
Q Consensus 212 ~L~ 214 (250)
.+.
T Consensus 184 ~~~ 186 (386)
T PF01053_consen 184 YNQ 186 (386)
T ss_dssp TTC
T ss_pred eee
Confidence 766
No 166
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=40.90 E-value=1.7e+02 Score=26.08 Aligned_cols=132 Identities=16% Similarity=0.182 Sum_probs=75.5
Q ss_pred ChHHHHHHHHHHHHcC-CCeEeCcCCcCCCChHHHHHHHhcCCC-CCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSG-ITLLDTSDIYGPYTNEILVGKALKGGM-RERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~G-i~~~DtA~~Yg~g~sE~~lg~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL 113 (250)
+.++..+.-+.|-+.| .++...|..++.|..-..+-++++... --.+-+..-++ ..+.+.. +-|
T Consensus 85 ~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG---------~l~~eq~-----~~L 150 (335)
T COG0502 85 EVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLG---------MLTEEQA-----EKL 150 (335)
T ss_pred CHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccC---------CCCHHHH-----HHH
Confidence 4566777777777889 889999988874445555555555421 11233333333 2234333 335
Q ss_pred HHcCCCcccEEEeecCCC----------CCCHHHHHHHHHHHHHcCCcce----EecCcccHHHHHHHhhcCCce-EEee
Q 025575 114 KRLDIDCIDLYYQHRVDT----------KIPIEVTIGELKKLVEEGKIKY----IGLSEACAATIRRAHAVHPIT-AVQL 178 (250)
Q Consensus 114 ~~L~~d~iDl~~lh~p~~----------~~~~~~~~~~l~~l~~~G~ir~----iGvSn~~~~~l~~~~~~~~~~-~~q~ 178 (250)
+.-|+|+ +-|+.+. ...+++-++.++.+++.|.--. +|+.+-..+.+.-+....... +..+
T Consensus 151 ~~aGvd~----ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsV 226 (335)
T COG0502 151 ADAGVDR----YNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPDSV 226 (335)
T ss_pred HHcChhh----eecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCCCee
Confidence 5567664 3565543 3457889999999999987443 345554444454443331111 4456
Q ss_pred ecCcCCc
Q 025575 179 EWSLWSR 185 (250)
Q Consensus 179 ~~n~~~~ 185 (250)
++|.+.+
T Consensus 227 PIn~l~P 233 (335)
T COG0502 227 PINFLNP 233 (335)
T ss_pred eeeeecC
Confidence 6666655
No 167
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=40.71 E-value=81 Score=27.35 Aligned_cols=138 Identities=13% Similarity=0.207 Sum_probs=77.4
Q ss_pred ChHHHHHHHHHHHH-cCCCeEeCcCC----cCCCChHHHHHHHhcCC-----CCCCEEEEeeeCcccCCCCCCCCCHHHH
Q 025575 36 PEPDMIALIHHAIN-SGITLLDTSDI----YGPYTNEILVGKALKGG-----MRERVELATKFGISFADGGKIRGDPAYV 105 (250)
Q Consensus 36 ~~~~~~~~l~~A~~-~Gi~~~DtA~~----Yg~g~sE~~lg~~l~~~-----~R~~~~i~tK~~~~~~~~~~~~~~~~~i 105 (250)
+.+.+++.++..++ .+.+++|.=.. +++. -...+-++|..+ .-+-=||..- .+.-+.+
T Consensus 118 sadkvreSv~rSlerLqldyvDilqiHDvefap~-ld~vl~Etlp~Le~lk~~Gk~RfiGit-----------gypldvl 185 (342)
T KOG1576|consen 118 SADKVRESVKRSLERLQLDYVDILQIHDVEFAPN-LDIVLNETLPALEELKQEGKIRFIGIT-----------GYPLDVL 185 (342)
T ss_pred hHHHHHHHHHHHHHHhCCceeEEEEeeccccccc-ccHHHHHHHHHHHHHHhcCceeEeeec-----------ccchHHH
Confidence 45677888888885 47777775221 1210 123333444322 1111122211 1223444
Q ss_pred HHHHHHHHHHcCCCcccEEE--eecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhcCCceEEeeecCcC
Q 025575 106 RACCEASLKRLDIDCIDLYY--QHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLW 183 (250)
Q Consensus 106 ~~~l~~sL~~L~~d~iDl~~--lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~ 183 (250)
...+ +-+..++|+++ +|.-- .-...++.|+.++.+| +||.|-++-.+--+.+..|+ ++||.
T Consensus 186 ~~~a-----e~~~G~~dvvlsY~ry~l---~d~tLl~~~~~~~sk~----vgVi~AsalsmgLLt~~gp~-----~wHPa 248 (342)
T KOG1576|consen 186 TECA-----ERGKGRLDVVLSYCRYTL---NDNTLLRYLKRLKSKG----VGVINASALSMGLLTNQGPP-----PWHPA 248 (342)
T ss_pred HHHH-----hcCCCceeeehhhhhhcc---ccHHHHHHHHHHHhcC----ceEEehhhHHHHHhhcCCCC-----CCCCC
Confidence 4444 44667899987 55421 1235678888888655 79988876666555555554 56777
Q ss_pred CcCch---hhhHHHHHHhCCeE
Q 025575 184 SRDVE---AEIVPTCRELGIGI 202 (250)
Q Consensus 184 ~~~~~---~~~~~~~~~~gi~v 202 (250)
.+... ....+.|+++||.+
T Consensus 249 S~Elk~~a~~aa~~Cq~rnv~l 270 (342)
T KOG1576|consen 249 SDELKEAAKAAAEYCQSRNVEL 270 (342)
T ss_pred CHHHHHHHHHHHHHHHHcCccH
Confidence 66321 46788899998764
No 168
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=40.71 E-value=2.3e+02 Score=24.18 Aligned_cols=78 Identities=13% Similarity=0.034 Sum_probs=51.4
Q ss_pred ChH-HHHHHHHHHHHcCCCeEeCcCCcCC-CChH---HHHHHHhcCC-CCCCEEEEeeeCcccCCCCCCCCCHHHHHHHH
Q 025575 36 PEP-DMIALIHHAINSGITLLDTSDIYGP-YTNE---ILVGKALKGG-MRERVELATKFGISFADGGKIRGDPAYVRACC 109 (250)
Q Consensus 36 ~~~-~~~~~l~~A~~~Gi~~~DtA~~Yg~-g~sE---~~lg~~l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l 109 (250)
+++ +...+.+.|++.|..|+=|+.-|+. |.+. +++-+.+++. ...+ +.-|...- -.+.+...+-+
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~--vgIKAsGG-------Irt~~~A~~~i 214 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKT--VGFKPAGG-------VRTAEDAAQYL 214 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCC--eeEEccCC-------CCCHHHHHHHH
Confidence 445 4888999999999999999999974 4333 3333444321 0122 33343211 23678888889
Q ss_pred HHHHHHcCCCccc
Q 025575 110 EASLKRLDIDCID 122 (250)
Q Consensus 110 ~~sL~~L~~d~iD 122 (250)
+.--+.||.++++
T Consensus 215 ~ag~~~lg~~~~~ 227 (257)
T PRK05283 215 ALADEILGADWAD 227 (257)
T ss_pred HHHHHHhChhhcC
Confidence 9999999987754
No 169
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=40.69 E-value=2.7e+02 Score=24.93 Aligned_cols=93 Identities=11% Similarity=-0.037 Sum_probs=43.0
Q ss_pred EEEeeeCcccC-CCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccH
Q 025575 83 ELATKFGISFA-DGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACA 161 (250)
Q Consensus 83 ~i~tK~~~~~~-~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~ 161 (250)
+|..|+.+... ++.....+.+..-..+-+-|+..|+|+|++---++... .+.. ....+.+++.=.+--+++..+++
T Consensus 227 ~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~-~~~~--~~~~~~ik~~~~~pv~~~G~~~~ 303 (362)
T PRK10605 227 RIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGG-EPYS--DAFREKVRARFHGVIIGAGAYTA 303 (362)
T ss_pred eEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCC-cccc--HHHHHHHHHHCCCCEEEeCCCCH
Confidence 47778765310 01111234444223444556667777777643221111 1111 11112333322223444455677
Q ss_pred HHHHHHhhcCCceEEee
Q 025575 162 ATIRRAHAVHPITAVQL 178 (250)
Q Consensus 162 ~~l~~~~~~~~~~~~q~ 178 (250)
+..+++++....+.+-+
T Consensus 304 ~~ae~~i~~G~~D~V~~ 320 (362)
T PRK10605 304 EKAETLIGKGLIDAVAF 320 (362)
T ss_pred HHHHHHHHcCCCCEEEE
Confidence 77777777766555543
No 170
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=40.54 E-value=2.9e+02 Score=25.45 Aligned_cols=137 Identities=13% Similarity=0.043 Sum_probs=71.8
Q ss_pred cCCcCCCChHHHHHHHhcCC----CC-CCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC
Q 025575 58 SDIYGPYTNEILVGKALKGG----MR-ERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK 132 (250)
Q Consensus 58 A~~Yg~g~sE~~lg~~l~~~----~R-~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~ 132 (250)
.-.|| .|.-|-++|++. ++ +-++|.+-.... .--+.+..-+++.-++++ +.++.+|.|+..
T Consensus 96 d~V~G---g~~~L~~aI~~~~~~~~p~~~I~V~~tC~~~--------liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~ 161 (443)
T TIGR01862 96 DIVFG---GEKKLKKLIHEAFTEFPLIKAISVYATCPTG--------LIGDDIEAVAKEVSKEIG---KDVVAVNCPGFA 161 (443)
T ss_pred ceeeC---cHHHHHHHHHHHHHhCCccceEEEECCChHH--------HhccCHHHHHHHHHHhcC---CCEEEEecCCcc
Confidence 44677 566777777654 43 456666654322 223334444444434443 689999988654
Q ss_pred CC-----HHHHHHH-HHHHH--------HcCCcceEecCcc--cHHHHHHHhhcCCceEEe-e---------------ec
Q 025575 133 IP-----IEVTIGE-LKKLV--------EEGKIKYIGLSEA--CAATIRRAHAVHPITAVQ-L---------------EW 180 (250)
Q Consensus 133 ~~-----~~~~~~~-l~~l~--------~~G~ir~iGvSn~--~~~~l~~~~~~~~~~~~q-~---------------~~ 180 (250)
.. ...+.++ ++.+. ++++|.-||-.++ +.+++.++++...+.++- + ..
T Consensus 162 g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~t~eei~~~~~A~l 241 (443)
T TIGR01862 162 GVSQSKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVVATFTGDGTYDEIRLMHKAKL 241 (443)
T ss_pred CCccchHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcccCCE
Confidence 32 1223332 33443 2467888885554 445677777664444331 1 12
Q ss_pred CcC-CcCchhhhHHHHH-HhCCeEEEeccC
Q 025575 181 SLW-SRDVEAEIVPTCR-ELGIGIVAYGPL 208 (250)
Q Consensus 181 n~~-~~~~~~~~~~~~~-~~gi~via~spl 208 (250)
|+. .+.......++.+ +.|++.+...|+
T Consensus 242 niv~~~~~~~~~A~~L~er~GiP~~~~~p~ 271 (443)
T TIGR01862 242 NLVHCARSANYIANELEERYGIPWMKIDFF 271 (443)
T ss_pred EEEEChHHHHHHHHHHHHHhCCCeEecccC
Confidence 222 1111123444444 459999987664
No 171
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=40.53 E-value=2.2e+02 Score=23.96 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=20.1
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCc
Q 025575 36 PEPDMIALIHHAINSGITLLDTS 58 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA 58 (250)
+.++..++++.-.+.||..++..
T Consensus 20 ~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 20 TLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred CHHHHHHHHHHHHHcCCCEEEee
Confidence 56788888888889999999997
No 172
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=40.16 E-value=28 Score=35.79 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCCcceE-ec-Cccc--HHHHHHHhhcCCceEEeeecCcCCcCch-hhhHHHHHHhCCeEEEeccCc
Q 025575 135 IEVTIGELKKLVEEGKIKYI-GL-SEAC--AATIRRAHAVHPITAVQLEWSLWSRDVE-AEIVPTCRELGIGIVAYGPLG 209 (250)
Q Consensus 135 ~~~~~~~l~~l~~~G~ir~i-Gv-Sn~~--~~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~via~spl~ 209 (250)
-.+++++|.++++.|+|..| |= +.-. ....+-|+.+ .+-++.|.+...... ...+.+|++++++..++-+|-
T Consensus 599 ~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~kYDvAIsT---ac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LD 675 (1293)
T KOG0996|consen 599 RNKVLDALMRLKESGRIPGFYGRLGDLGAIDEKYDVAIST---ACARLDYIVVDTIETAQECINFLKKNNLGRATFIILD 675 (1293)
T ss_pred hhHHHHHHHHHHHcCCCCccccccccccccchHHHHHHHH---hccccceEEeccHHHHHHHHHHHHHcCCCceeEEehH
Confidence 34789999999999999654 21 1110 1122223332 344555655554322 489999999999999999996
Q ss_pred cCc
Q 025575 210 QGF 212 (250)
Q Consensus 210 ~G~ 212 (250)
.=.
T Consensus 676 ki~ 678 (1293)
T KOG0996|consen 676 KIK 678 (1293)
T ss_pred hhh
Confidence 543
No 173
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=39.92 E-value=68 Score=29.72 Aligned_cols=103 Identities=15% Similarity=0.026 Sum_probs=66.4
Q ss_pred CChHHHHHHHhcCC---CCCCEEEEeeeCcccCCC-----------CCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecC
Q 025575 64 YTNEILVGKALKGG---MRERVELATKFGISFADG-----------GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRV 129 (250)
Q Consensus 64 g~sE~~lg~~l~~~---~R~~~~i~tK~~~~~~~~-----------~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p 129 (250)
|.=|.++.-+-+.. -+-.+++++-++...... .....+. .+.-.||.+.|+|..
T Consensus 148 GTyeT~~~~~r~h~~gdL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~-------srI~~Rl~t~y~d~~----- 215 (561)
T COG2987 148 GTYETFAEAGRQHFGGDLKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDE-------SRIDKRLRTGYLDEI----- 215 (561)
T ss_pred chHHHHHHHHHHhcCCCccceEEEecCCCcccccchHHHHhcCceEEEEEeCH-------HHHHHHHhcchhhhh-----
Confidence 44555544443322 567788888877542211 0011112 233456777888753
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhc-CCceE--Eeeec
Q 025575 130 DTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV-HPITA--VQLEW 180 (250)
Q Consensus 130 ~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-~~~~~--~q~~~ 180 (250)
...++|.+...++..+.|+-.+||+-..-++.+.++++. ..|++ -|...
T Consensus 216 --a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsa 267 (561)
T COG2987 216 --AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSA 267 (561)
T ss_pred --cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceecccccc
Confidence 245889999999999999999999999999999998876 33443 35543
No 174
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=39.89 E-value=2.5e+02 Score=25.79 Aligned_cols=109 Identities=12% Similarity=0.112 Sum_probs=54.9
Q ss_pred CcCCcCCCChHHHHHHHhcCC----CCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCC-CcccEEEeecCCC
Q 025575 57 TSDIYGPYTNEILVGKALKGG----MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDI-DCIDLYYQHRVDT 131 (250)
Q Consensus 57 tA~~Yg~g~sE~~lg~~l~~~----~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~-d~iDl~~lh~p~~ 131 (250)
..-.|| .|+-|-++|++. +.+=++|.|-.-+. .--+.+..-+++.-++... ..+.++.++.|..
T Consensus 63 ~d~V~G---g~~~L~~ai~~~~~~~~p~~I~v~ttC~~~--------iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf 131 (435)
T cd01974 63 DAAVFG---GQNNLIDGLKNAYAVYKPDMIAVSTTCMAE--------VIGDDLNAFIKNAKNKGSIPADFPVPFANTPSF 131 (435)
T ss_pred CceEEC---cHHHHHHHHHHHHHhcCCCEEEEeCCchHh--------hhhccHHHHHHHHHHhccCCCCCeEEEecCCCC
Confidence 445777 577777887764 33445666554322 1223333333333333211 1378888988865
Q ss_pred CCCH----HHHHHHHH-HHHH-------cCCcceEe-cCcc-c-HHHHHHHhhcCCceEE
Q 025575 132 KIPI----EVTIGELK-KLVE-------EGKIKYIG-LSEA-C-AATIRRAHAVHPITAV 176 (250)
Q Consensus 132 ~~~~----~~~~~~l~-~l~~-------~G~ir~iG-vSn~-~-~~~l~~~~~~~~~~~~ 176 (250)
.... +.++++|- .+.. .+.|.-|| ..+. . .+++.++++...+.++
T Consensus 132 ~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 132 VGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 4332 23333333 2222 23455565 2222 2 5677777776544444
No 175
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=39.80 E-value=2.6e+02 Score=24.53 Aligned_cols=94 Identities=17% Similarity=0.076 Sum_probs=51.9
Q ss_pred CCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCC--C--CCH--HHHHHHHHHHHHcCCcc
Q 025575 79 RERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT--K--IPI--EVTIGELKKLVEEGKIK 152 (250)
Q Consensus 79 R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~--~--~~~--~~~~~~l~~l~~~G~ir 152 (250)
.+++.|..|+.+... .....+.+... .+-+.|+..|+|+|+ +|.... . .+. ...++.++++++.-.|-
T Consensus 219 G~d~~v~vri~~~~~--~~~g~~~~e~~-~ia~~Le~~gvd~ie---v~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iP 292 (336)
T cd02932 219 PEDKPLFVRISATDW--VEGGWDLEDSV-ELAKALKELGVDLID---VSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIP 292 (336)
T ss_pred CCCceEEEEEccccc--CCCCCCHHHHH-HHHHHHHHcCCCEEE---ECCCCCCcccccCCCccccHHHHHHHHhhCCCC
Confidence 456778888774310 01123444433 334456667765554 332110 0 011 12345666777766677
Q ss_pred eEecCcc-cHHHHHHHhhcCCceEEee
Q 025575 153 YIGLSEA-CAATIRRAHAVHPITAVQL 178 (250)
Q Consensus 153 ~iGvSn~-~~~~l~~~~~~~~~~~~q~ 178 (250)
-++..+. +++.++++++....+.+++
T Consensus 293 Vi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 293 VIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 7777775 7788888887766666665
No 176
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=39.77 E-value=1.7e+02 Score=26.71 Aligned_cols=80 Identities=9% Similarity=0.029 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhh--cCCceEEeeecCcCCcCch-hhhHHHHHHhCCeEEEeccCccC
Q 025575 135 IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHA--VHPITAVQLEWSLWSRDVE-AEIVPTCRELGIGIVAYGPLGQG 211 (250)
Q Consensus 135 ~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~--~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~via~spl~~G 211 (250)
...+.+.++.+.++.-|....+-.-+.+.+.+++. ..+...+..+-||...-.+ ..+.+.|+++|+.++.=+.++.+
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 45678888888888777777777666656655553 4667788888998887543 58999999999999988899888
Q ss_pred cCC
Q 025575 212 FLS 214 (250)
Q Consensus 212 ~L~ 214 (250)
.+.
T Consensus 192 ~~q 194 (396)
T COG0626 192 VLQ 194 (396)
T ss_pred ccc
Confidence 777
No 177
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=39.77 E-value=45 Score=24.48 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=24.1
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcC
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYG 62 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg 62 (250)
+...+.+....+++.|++.||.+..|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 566788999999999999999999985
No 178
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=39.70 E-value=3e+02 Score=25.12 Aligned_cols=96 Identities=11% Similarity=0.063 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC--CcceEec--CcccHHHHHHHhhcCCceE
Q 025575 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG--KIKYIGL--SEACAATIRRAHAVHPITA 175 (250)
Q Consensus 100 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G--~ir~iGv--Sn~~~~~l~~~~~~~~~~~ 175 (250)
.+++...+-+.+.++. .+++++..|-+..+ |+.+.+|.+.- .+.-.|= ..+++..+.++++....++
T Consensus 261 ~t~~eai~~~~~l~e~-----~~i~~iEdPl~~~D----~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~ 331 (408)
T cd03313 261 LTSEELIDYYKELVKK-----YPIVSIEDPFDEDD----WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANA 331 (408)
T ss_pred cCHHHHHHHHHHHHHh-----CCcEEEEeCCCCcC----HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 4555554444444443 45777887755443 55666666663 4443332 2247899999988888888
Q ss_pred EeeecCcCCcC-chhhhHHHHHHhCCeEEE
Q 025575 176 VQLEWSLWSRD-VEAEIVPTCRELGIGIVA 204 (250)
Q Consensus 176 ~q~~~n~~~~~-~~~~~~~~~~~~gi~via 204 (250)
+|+..+-+-.- ...++...|+++|+.++.
T Consensus 332 v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 332 LLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred EEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 88877754321 124899999999999864
No 179
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=39.64 E-value=1.9e+02 Score=22.80 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=51.2
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhc--CCceEEeeecCcCCcC-----chhhhHHHHHH
Q 025575 125 YQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV--HPITAVQLEWSLWSRD-----VEAEIVPTCRE 197 (250)
Q Consensus 125 ~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~--~~~~~~q~~~n~~~~~-----~~~~~~~~~~~ 197 (250)
++..|.... -+++++.--+=-++.-|++|=|.+-+.....++++. ..+.++-+.|+..... .++++-+.+++
T Consensus 3 yf~~pG~eN-T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 3 YFEKPGKEN-TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred cccCCcccc-hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 445554433 345666555555667788888776655555555443 2244555666654432 33689999999
Q ss_pred hCCeEEEeccC
Q 025575 198 LGIGIVAYGPL 208 (250)
Q Consensus 198 ~gi~via~spl 208 (250)
+|..|..-|-.
T Consensus 82 rGa~v~~~sHa 92 (186)
T COG1751 82 RGAKVLTQSHA 92 (186)
T ss_pred cCceeeeehhh
Confidence 99999876543
No 180
>PRK02399 hypothetical protein; Provisional
Probab=39.24 E-value=89 Score=28.55 Aligned_cols=57 Identities=21% Similarity=0.327 Sum_probs=41.2
Q ss_pred HHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceE--------------ecCcccHHHHHHHhhc
Q 025575 108 CCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYI--------------GLSEACAATIRRAHAV 170 (250)
Q Consensus 108 ~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~i--------------GvSn~~~~~l~~~~~~ 170 (250)
+++...++|.-...|++.+|.-...- ++||+|.++|.+..+ |+-+..++++..+.+.
T Consensus 200 ~v~~~~~~Le~~GyEvlVFHATG~GG------raME~Li~~G~~~gVlDlTttEv~d~l~GGv~sagp~Rl~Aa~~~ 270 (406)
T PRK02399 200 CVQAAREELEARGYEVLVFHATGTGG------RAMEKLIDSGLIAGVLDLTTTEVCDELFGGVLAAGPDRLEAAART 270 (406)
T ss_pred HHHHHHHHHHhCCCeEEEEcCCCCch------HHHHHHHHcCCceEEEEcchHHHHHHHhCcCccCCccHHHHHHHc
Confidence 44444445544447999999865533 589999999999876 6777778888887665
No 181
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=39.21 E-value=2.9e+02 Score=24.94 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=31.3
Q ss_pred CceeecccccCCC----CCCC-CChHHHHHHHHHHHHcCCCeEeCc
Q 025575 18 SAQGLGCMAMSCL----YGPP-EPEPDMIALIHHAINSGITLLDTS 58 (250)
Q Consensus 18 s~lglG~~~~g~~----~~~~-~~~~~~~~~l~~A~~~Gi~~~DtA 58 (250)
.+.+||.|.+||. ||.. .+.....+.++.+-+.|+..+...
T Consensus 7 ~~f~~~~w~~~~~~~~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~ 52 (382)
T TIGR02631 7 DRFTFGLWTVGWVGRDPFGDATRTALDPVEAVHKLAELGAYGVTFH 52 (382)
T ss_pred CceEEEeeccCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCEEEec
Confidence 4789999999863 5544 234456788999999999998865
No 182
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=39.20 E-value=2.4e+02 Score=23.97 Aligned_cols=99 Identities=14% Similarity=0.111 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhc--CCceEEee
Q 025575 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV--HPITAVQL 178 (250)
Q Consensus 101 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~--~~~~~~q~ 178 (250)
+.+.+.+...+.. .-|.+.||+=.- +......+.....++.+++.-.+ -|.+-+++++.++++++. +..-+|-
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iINs- 97 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLINS- 97 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEEe-
Confidence 3444444444433 457788887642 11112233444555555544222 367778888888888876 4333322
Q ss_pred ecCcCCcCchhhhHHHHHHhCCeEEEec
Q 025575 179 EWSLWSRDVEAEIVPTCRELGIGIVAYG 206 (250)
Q Consensus 179 ~~n~~~~~~~~~~~~~~~~~gi~via~s 206 (250)
.+..... .+++++.++++|+.++...
T Consensus 98 -Is~~~~~-~~~~~~l~~~~g~~vv~m~ 123 (261)
T PRK07535 98 -VSAEGEK-LEVVLPLVKKYNAPVVALT 123 (261)
T ss_pred -CCCCCcc-CHHHHHHHHHhCCCEEEEe
Confidence 2222211 2467888888888888644
No 183
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=39.18 E-value=3.4e+02 Score=25.68 Aligned_cols=138 Identities=13% Similarity=0.119 Sum_probs=73.7
Q ss_pred cCCcCCCChHHHHH----HHhcCCC-CCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC
Q 025575 58 SDIYGPYTNEILVG----KALKGGM-RERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK 132 (250)
Q Consensus 58 A~~Yg~g~sE~~lg----~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~ 132 (250)
.-.|| .|+-|- ++++..+ .+-++|.|-.... .--+.+..-+++.-++.. -+.++.+|.|+..
T Consensus 106 diVfG---Ge~kL~~~I~ea~~~~~~p~~I~V~tTC~t~--------lIGDDi~av~k~~~~~~~--~~pVi~v~tpGF~ 172 (513)
T TIGR01861 106 HVVFG---AEKLLKQNIIEAFKAFPHIKRMTIYQTCATA--------LIGDDIAAIAKEVMEEMP--DVDIFVCNSPGFA 172 (513)
T ss_pred ceEeC---cHHHHHHHHHHHHHhCCCCCeEEEEccCchh--------hccCCHHHHHHHHHHhcC--CCcEEEEeCCCcc
Confidence 44677 566444 4444443 4567887776532 234455555555555441 2689999999765
Q ss_pred CCH-----HHHHHH-HHHHHH--------cCCcceEecCcc--cHHHHHHHhhcCCceEEee----------------ec
Q 025575 133 IPI-----EVTIGE-LKKLVE--------EGKIKYIGLSEA--CAATIRRAHAVHPITAVQL----------------EW 180 (250)
Q Consensus 133 ~~~-----~~~~~~-l~~l~~--------~G~ir~iGvSn~--~~~~l~~~~~~~~~~~~q~----------------~~ 180 (250)
... ..+.++ ++++.. .+.|.-||-.|+ +.+++.++++...+.++.+ ..
T Consensus 173 G~~~~gg~~~a~~ali~~~v~~~~~~~~~~~~VNliG~~n~~gD~~eik~lLe~~Gl~v~~~~~gg~t~~ei~~~~~A~l 252 (513)
T TIGR01861 173 GPSQSGGHHKINIAWINQKVGTVEPEIKGKHVINYVGEYNIQGDQEVMVDYFQRMGIQVLSTFTGNGSYDDLRGMHRAHL 252 (513)
T ss_pred CccccchHHHHHHHHHHHhhcccCcccCCCCeEEEeCCCCCccCHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhccCCE
Confidence 421 112222 233331 256888886565 5567777777644444322 12
Q ss_pred CcC-CcCchhhhHHHHH-HhCCeEEEeccC
Q 025575 181 SLW-SRDVEAEIVPTCR-ELGIGIVAYGPL 208 (250)
Q Consensus 181 n~~-~~~~~~~~~~~~~-~~gi~via~spl 208 (250)
|+. .......+-++++ +.||+.+-.+|+
T Consensus 253 niv~~~~~~~~~A~~Leer~GiP~~~~~~~ 282 (513)
T TIGR01861 253 NVLECARSAEYICNELRKRYGIPRLDIDGF 282 (513)
T ss_pred EEEECHHHHHHHHHHHHHHhCCCeEecCcC
Confidence 222 1111123444444 569999887775
No 184
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=38.99 E-value=76 Score=25.89 Aligned_cols=59 Identities=22% Similarity=0.202 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCcceEecCcc-cHHHHHHHhhcCCceEEeeecCcCCcCchhhhHHHHHHhCCeEEE
Q 025575 139 IGELKKLVEEGKIKYIGLSEA-CAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVA 204 (250)
Q Consensus 139 ~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via 204 (250)
++.++.++++--=-.||..+. +.++++++++.+- +.-.+|.. ..+++++|+++|+.++.
T Consensus 47 ~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA----~FivSP~~---~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 47 LEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGA----QFIVSPGF---DPEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-----SEEEESS-----HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCC----CEEECCCC---CHHHHHHHHHcCCcccC
Confidence 344444443322245888875 8888888887642 11223332 36999999999999984
No 185
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=38.89 E-value=1.4e+02 Score=26.61 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=80.7
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHH---hcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHH
Q 025575 35 EPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKA---LKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (250)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~---l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~ 111 (250)
...++..+.++.|.+.|+..+-|+-.++.+..|..+..+ ++...+..+.+..-+.+..-.. -..|...+ .
T Consensus 13 ~~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~~~~~~~~ell~~Anklg~~vivDvnPsil~~--l~~S~~~l-----~ 85 (360)
T COG3589 13 SPKEKDIAYIDRMHKYGFKRIFTSLLIPEEDAELYFHRFKELLKEANKLGLRVIVDVNPSILKE--LNISLDNL-----S 85 (360)
T ss_pred CcchhHHHHHHHHHHcCccceeeecccCCchHHHHHHHHHHHHHHHHhcCcEEEEEcCHHHHhh--cCCChHHH-----H
Confidence 356778999999999999999999999987665444333 2222555665555544321000 01111111 2
Q ss_pred HHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhcCC----ceEEe----eecCcC
Q 025575 112 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHP----ITAVQ----LEWSLW 183 (250)
Q Consensus 112 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~----~~~~q----~~~n~~ 183 (250)
.++.+|++- + +.|...+ .++..++-+++.--.+-.|+-+- .+..+++..+ +..+. .+|.=+
T Consensus 86 ~f~e~G~~g---l---RlD~gfS----~eei~~ms~~~lkieLN~S~it~-~l~~l~~~~an~~nl~~cHNyYPr~yTGL 154 (360)
T COG3589 86 RFQELGVDG---L---RLDYGFS----GEEIAEMSKNPLKIELNASTITE-LLDSLLAYKANLENLEGCHNYYPRPYTGL 154 (360)
T ss_pred HHHHhhhhh---e---eecccCC----HHHHHHHhcCCeEEEEchhhhHH-HHHHHHHhccchhhhhhcccccCCcccCc
Confidence 223333211 0 1122222 23334444555333444555443 4555544311 11111 122223
Q ss_pred CcCchhhhHHHHHHhCCeEEEeccCccC
Q 025575 184 SRDVEAEIVPTCRELGIGIVAYGPLGQG 211 (250)
Q Consensus 184 ~~~~~~~~~~~~~~~gi~via~spl~~G 211 (250)
.+....+.=++.+++|+.+.|+-+--++
T Consensus 155 S~e~f~~kn~~fk~~~i~t~AFis~~~~ 182 (360)
T COG3589 155 SREHFKRKNEIFKEYNIKTAAFISSDGA 182 (360)
T ss_pred cHHHHHHHHHHHHhcCCceEEEEecCCc
Confidence 3333346678888999999998765443
No 186
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=38.78 E-value=1.3e+02 Score=23.74 Aligned_cols=73 Identities=12% Similarity=0.062 Sum_probs=45.5
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~ 115 (250)
.++..+-.++.|-+.||.+|=.|..||. +-..+-+.+.. . =++++.|--.... ..+...+.+.+++-|+.
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~--tA~k~lemveg-~-lkvVvVthh~Gf~------e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGY--TALKALEMVEG-D-LKVVVVTHHAGFE------EKGTQEMDEEVRKELKE 81 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccH--HHHHHHHhccc-C-ceEEEEEeecccc------cCCceecCHHHHHHHHH
Confidence 4455667777888899999999999985 44433333332 1 2355555433221 22344566778888888
Q ss_pred cCC
Q 025575 116 LDI 118 (250)
Q Consensus 116 L~~ 118 (250)
.|.
T Consensus 82 rGa 84 (186)
T COG1751 82 RGA 84 (186)
T ss_pred cCc
Confidence 885
No 187
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=38.76 E-value=2.8e+02 Score=24.64 Aligned_cols=152 Identities=10% Similarity=0.041 Sum_probs=85.2
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcCCCChH--HHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNE--ILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE--~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL 113 (250)
+.++..+.++.+.+.|++.|=.- .++...-+ ...=+++++.--+++-|.-=.. ..++.+...+ +-+.|
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan--------~~~~~~~A~~-~~~~l 212 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRRDLKACLAVREAVGPDMRLMHDGA--------HWYSRADALR-LGRAL 212 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHHHHHHHHHHHHHhCCCCeEEEECC--------CCcCHHHHHH-HHHHh
Confidence 45667778888899999988652 12210011 1122334432122333322211 1334443322 22233
Q ss_pred HHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCccc-HHHHHHHhhcCCceEEeeecCcCCc-Cchhh
Q 025575 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEAC-AATIRRAHAVHPITAVQLEWSLWSR-DVEAE 190 (250)
Q Consensus 114 ~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~-~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~ 190 (250)
+.+ ++.++..|-+ .. .++.+.+|+++-.+. ..|=+-++ ..++.++++...++++|+..+..-. ..-.+
T Consensus 213 ~~~-----~l~~iEeP~~---~~-d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ 283 (368)
T cd03329 213 EEL-----GFFWYEDPLR---EA-SISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAMK 283 (368)
T ss_pred hhc-----CCCeEeCCCC---ch-hHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHH
Confidence 333 4555555532 22 347777888876664 22333456 8888888888888999987765422 11258
Q ss_pred hHHHHHHhCCeEEEec
Q 025575 191 IVPTCRELGIGIVAYG 206 (250)
Q Consensus 191 ~~~~~~~~gi~via~s 206 (250)
+...|+++|+.+...+
T Consensus 284 ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 284 TAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHcCCEEEEEC
Confidence 9999999999997643
No 188
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=38.71 E-value=2.8e+02 Score=24.54 Aligned_cols=153 Identities=10% Similarity=0.070 Sum_probs=88.5
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcCCC--------ChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYGPY--------TNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRA 107 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g--------~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~ 107 (250)
+.++..+.+..+.+.|++.|=.--....+ ..+...=+++++.-..++-|..=... .++.+..
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~--------~~~~~~A-- 192 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFHG--------RVSKPMA-- 192 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCC--------CCCHHHH--
Confidence 34556666777778999877643211100 01222223444422233333222211 2344332
Q ss_pred HHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcccHHHHHHHhhcCCceEEeeecCcCCc-
Q 025575 108 CCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR- 185 (250)
Q Consensus 108 ~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~- 185 (250)
.+.++.|. ..++.++..|-+. +.++.+.+|++..-+. ..|=|.++...+..+++...++++|......-.
T Consensus 193 --~~~~~~l~--~~~i~~iEeP~~~----~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGi 264 (352)
T cd03325 193 --KDLAKELE--PYRLLFIEEPVLP----ENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGI 264 (352)
T ss_pred --HHHHHhcc--ccCCcEEECCCCc----cCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCH
Confidence 33333442 3456666666432 2477888888876664 555666788999998887778899987654321
Q ss_pred CchhhhHHHHHHhCCeEEEec
Q 025575 186 DVEAEIVPTCRELGIGIVAYG 206 (250)
Q Consensus 186 ~~~~~~~~~~~~~gi~via~s 206 (250)
..-.++.+.|+++|+.++..+
T Consensus 265 t~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 265 TELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred HHHHHHHHHHHHcCCcEeccC
Confidence 112589999999999998654
No 189
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=38.70 E-value=2.6e+02 Score=24.21 Aligned_cols=93 Identities=11% Similarity=-0.007 Sum_probs=49.5
Q ss_pred CCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCC----------CHHHHHHHHHHHHHcC
Q 025575 80 ERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI----------PIEVTIGELKKLVEEG 149 (250)
Q Consensus 80 ~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~----------~~~~~~~~l~~l~~~G 149 (250)
+++-|..|+...... ....+.+... .+-+.|+.+|+|+|++ +...... .....++.+..+++.=
T Consensus 207 ~d~~i~vris~~~~~--~~g~~~~e~~-~la~~l~~~G~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~ 280 (327)
T cd02803 207 PDFPVGVRLSADDFV--PGGLTLEEAI-EIAKALEEAGVDALHV---SGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV 280 (327)
T ss_pred CCceEEEEechhccC--CCCCCHHHHH-HHHHHHHHcCCCEEEe---CCCCCcccccccCCCCCCcchhHHHHHHHHHHC
Confidence 467788888653210 0123444443 3344556677665543 3221111 1123345556666655
Q ss_pred CcceEecCcc-cHHHHHHHhhcCCceEEee
Q 025575 150 KIKYIGLSEA-CAATIRRAHAVHPITAVQL 178 (250)
Q Consensus 150 ~ir~iGvSn~-~~~~l~~~~~~~~~~~~q~ 178 (250)
.+--++..+. +++.++++++....+.+++
T Consensus 281 ~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 281 KIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred CCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 5666666665 4777888777656666665
No 190
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=38.66 E-value=1.4e+02 Score=26.12 Aligned_cols=133 Identities=12% Similarity=0.095 Sum_probs=73.6
Q ss_pred ChHHHHHHHHHHHHcCCCeEeC----------cCCcCCC--ChHHHHHHHhcCC-CCCCEEEEeeeCcccCCCCCCCCCH
Q 025575 36 PEPDMIALIHHAINSGITLLDT----------SDIYGPY--TNEILVGKALKGG-MRERVELATKFGISFADGGKIRGDP 102 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dt----------A~~Yg~g--~sE~~lg~~l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~ 102 (250)
+.+...+..+.+.+.|+..||- ...+|.+ .+-..+.+.++.. ..-++=|+.|+...+ +.+.
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~------~~~~ 137 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGW------DDSP 137 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESEC------T--C
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccccc------ccch
Confidence 5667777777777789999994 2334432 3445566665553 112355666665432 2233
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeecCCCCCCH--HHHHHHHHHHHHcCCcceEecCc-ccHHHHHHHhhcCCceEEee
Q 025575 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTKIPI--EVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQL 178 (250)
Q Consensus 103 ~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~--~~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~~~~~~q~ 178 (250)
+...+ +-+.|+..| +|.+.+|.-...... ..-|+.+.++++.=.|--||=.+ ++.+.+.+.++....+-+++
T Consensus 138 ~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 138 EETIE-FARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMI 212 (309)
T ss_dssp HHHHH-HHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEE
T ss_pred hHHHH-HHHHhhhcc---cceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEE
Confidence 44433 445666676 789999975443322 45688899998887776666554 47788888777645555655
No 191
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=38.66 E-value=2.6e+02 Score=24.22 Aligned_cols=105 Identities=12% Similarity=0.004 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcc-cHHHHHHHhhcCCceEEeee
Q 025575 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEA-CAATIRRAHAVHPITAVQLE 179 (250)
Q Consensus 101 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~q~~ 179 (250)
+++.+++.++..++ .+-+.+--+-++..+...+.+.....++.+++.|.--.+=++.. +...+..++.....+.+-
T Consensus 138 ~~~~~~~~~~~~~~-~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~ri~-- 214 (324)
T TIGR01430 138 QPEAAEETLELAKP-YKEQTIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGATRIG-- 214 (324)
T ss_pred CHHHHHHHHHHHHh-hccCcEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCchhcc--
Confidence 46777777776665 32222222233433333445667778888888887655544433 233444443221111111
Q ss_pred cCcCCcCchhhhHHHHHHhCCeEEEeccCcc
Q 025575 180 WSLWSRDVEAEIVPTCRELGIGIVAYGPLGQ 210 (250)
Q Consensus 180 ~n~~~~~~~~~~~~~~~~~gi~via~spl~~ 210 (250)
|.......++.++.++++||.+.. .|...
T Consensus 215 -Hg~~l~~~~~~i~~l~~~gi~v~~-cP~Sn 243 (324)
T TIGR01430 215 -HGVRALEDPELLKRLAQENITLEV-CPTSN 243 (324)
T ss_pred -hhhhhccCHHHHHHHHHcCceEEE-CCccc
Confidence 111111124689999999988763 44443
No 192
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=38.51 E-value=1.2e+02 Score=22.03 Aligned_cols=51 Identities=12% Similarity=0.032 Sum_probs=29.0
Q ss_pred CcccHHHHHHHhhcCCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEecc
Q 025575 157 SEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGP 207 (250)
Q Consensus 157 Sn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~sp 207 (250)
+..+.+.+..++...+|+++-+--..-.+....++.+.++++||++..+..
T Consensus 37 ~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 37 SDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred ccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 344556666655433345544432222222235788999999998887653
No 193
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=38.37 E-value=2.3e+02 Score=23.46 Aligned_cols=131 Identities=13% Similarity=0.102 Sum_probs=68.9
Q ss_pred CCeEeC-cCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCC
Q 025575 52 ITLLDT-SDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVD 130 (250)
Q Consensus 52 i~~~Dt-A~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~ 130 (250)
.+.++. +..|+. -+++.+.++.++ -.+++..+-|......-...-....+.+.+.+-+.++-|+ +.+..+++.-|.
T Consensus 19 F~~VEvn~TFY~~-P~~~t~~~W~~~-~p~~F~F~vK~~~~iTH~~~l~~~~~~~~~~F~~~~~~L~-~klg~iL~Q~Pp 95 (230)
T PF01904_consen 19 FNTVEVNSTFYRI-PSPETVARWREQ-TPEGFRFSVKAPQLITHERRLRDCAEELWRRFLEALEPLG-EKLGPILFQFPP 95 (230)
T ss_dssp -SEEEE-HHCCSS-S-HHHHHHHHCT-S-TT-EEEEE--CCCCCCCHCGSSHHHHHHHHHHHCHHHH-T-EEEEEEE--T
T ss_pred CCeEEECcccCCC-CCHHHHHHHHhh-CCCCeEEEEeccHHheecccccccHHHHHHHHHHHHHHHh-hcceEEEEEcCC
Confidence 555554 445653 277888888877 5578999999875432000001235566455566899998 899999999886
Q ss_pred CCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhcCCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEecc
Q 025575 131 TKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGP 207 (250)
Q Consensus 131 ~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~sp 207 (250)
....-.+.++.|..+.+.-. ......+.+.---+. .++++++++++|+..+.-..
T Consensus 96 sf~~~~~~~~~l~~~l~~~~-------------------~~~~~avE~R~~sW~---~~~~~~~l~~~~~~~v~~d~ 150 (230)
T PF01904_consen 96 SFRFTPENLERLDAFLDRLP-------------------RGFRYAVEFRHPSWF---TEEVFELLREHGVALVIADS 150 (230)
T ss_dssp T--S-HHHHHHHHHHHHHTT--------------------TS-EEEE--BGGGG---CHHHHHHHHHTT-EEEEEE-
T ss_pred CcCCCHHHHHHHHHHHhhcc-------------------cccceEEecCCcchh---hHHHHHHHHHcCCEEEEeCC
Confidence 54444455555554443321 011233444322233 26899999999999885443
No 194
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=38.32 E-value=1.9e+02 Score=29.41 Aligned_cols=71 Identities=11% Similarity=0.035 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHHHHHcCC--------------------------CcccEEEeecCCCCCCH---HHHHHHHHHHHHcC
Q 025575 99 RGDPAYVRACCEASLKRLDI--------------------------DCIDLYYQHRVDTKIPI---EVTIGELKKLVEEG 149 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~--------------------------d~iDl~~lh~p~~~~~~---~~~~~~l~~l~~~G 149 (250)
+..+..+.+.++.+|+.++. ....++++..|....++ ...|+...++++.|
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 44567788888888887753 24677888888766654 46899999999999
Q ss_pred CcceEecCcccHHHHHHHhhcC
Q 025575 150 KIKYIGLSEACAATIRRAHAVH 171 (250)
Q Consensus 150 ~ir~iGvSn~~~~~l~~~~~~~ 171 (250)
+ +|=+.+|+.++.+.+....
T Consensus 749 ~--aiiLTSHsMeE~EaLCtR~ 768 (885)
T KOG0059|consen 749 K--AIILTSHSMEEAEALCTRT 768 (885)
T ss_pred C--EEEEEcCCHHHHHHHhhhh
Confidence 9 8999999999988876553
No 195
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=38.15 E-value=2.8e+02 Score=24.40 Aligned_cols=153 Identities=13% Similarity=0.117 Sum_probs=87.9
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcCCCC------hHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYGPYT------NEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACC 109 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~------sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l 109 (250)
+.++..+.++.+++.|++.|=.--..+... .....=+++++.-.+++-|..=.. ..++++...
T Consensus 120 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~~g~~~~l~vDan--------~~~~~~~A~--- 188 (341)
T cd03327 120 DLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREAVGYDVDLMLDCY--------MSWNLNYAI--- 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcEEEECC--------CCCCHHHHH---
Confidence 445566777788899999775421111100 111112333332122333322211 133454432
Q ss_pred HHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCcccHHHHHHHhhcCCceEEeeecCcCCc-Cc
Q 025575 110 EASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DV 187 (250)
Q Consensus 110 ~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~ 187 (250)
+.+++| +.+++.++..|-+. +.++.+.+|++...+. ..|=|.++...+.++++...++++|...+-.-. ..
T Consensus 189 -~~~~~l--~~~~~~~iEeP~~~----~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~ 261 (341)
T cd03327 189 -KMARAL--EKYELRWIEEPLIP----DDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITE 261 (341)
T ss_pred -HHHHHh--hhcCCccccCCCCc----cCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence 233333 23455666665432 3466778888887775 556667789999999988888999987665422 11
Q ss_pred hhhhHHHHHHhCCeEEEec
Q 025575 188 EAEIVPTCRELGIGIVAYG 206 (250)
Q Consensus 188 ~~~~~~~~~~~gi~via~s 206 (250)
..++.+.|+++|+.++..+
T Consensus 262 ~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 262 LKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHHHHHHHHcCCeecccc
Confidence 2589999999999988653
No 196
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=37.97 E-value=2.1e+02 Score=22.96 Aligned_cols=100 Identities=16% Similarity=0.191 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeecCCC--CCCHHHHHHHHHHHHHcCCcceEecCcccH--HHHHHHhhcCCceEEee
Q 025575 103 AYVRACCEASLKRLDIDCIDLYYQHRVDT--KIPIEVTIGELKKLVEEGKIKYIGLSEACA--ATIRRAHAVHPITAVQL 178 (250)
Q Consensus 103 ~~i~~~l~~sL~~L~~d~iDl~~lh~p~~--~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~--~~l~~~~~~~~~~~~q~ 178 (250)
......+.+.++..+... +-+.+--.+. ..........++.|++.|- .+.+.+|+. ..+.. +...+++.+=+
T Consensus 99 ~~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~-l~~l~~d~iKl 174 (241)
T smart00052 99 PDLVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSY-LKRLPVDLLKI 174 (241)
T ss_pred chHHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHH-HHhCCCCeEEE
Confidence 334566777777766542 2333332221 1233445588999999996 355555533 22232 22334666555
Q ss_pred ecCcCCc--------CchhhhHHHHHHhCCeEEEec
Q 025575 179 EWSLWSR--------DVEAEIVPTCRELGIGIVAYG 206 (250)
Q Consensus 179 ~~n~~~~--------~~~~~~~~~~~~~gi~via~s 206 (250)
..+.... .....++..|+..|+.|++-+
T Consensus 175 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 210 (241)
T smart00052 175 DKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEG 210 (241)
T ss_pred CHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEec
Confidence 5443321 112478899999999999754
No 197
>PRK10551 phage resistance protein; Provisional
Probab=37.97 E-value=84 Score=29.64 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=63.4
Q ss_pred CEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCC-CHHHHHHHHHHHHHcCCcceEecCcc
Q 025575 81 RVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKIKYIGLSEA 159 (250)
Q Consensus 81 ~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~-~~~~~~~~l~~l~~~G~ir~iGvSn~ 159 (250)
...|+-.+.+. ......+...+.+.++.++.+..- +.+.-.+... ...+..+.++.|++.|- .|.+.+|
T Consensus 349 ~~~lsINis~~-------~l~~~~f~~~l~~~l~~~~~~~~~-LvlEItE~~~~~~~~~~~~l~~Lr~~G~--~ialDDF 418 (518)
T PRK10551 349 GAKLGINISPA-------HLHSDSFKADVQRLLASLPADHFQ-IVLEITERDMVQEEEATKLFAWLHSQGI--EIAIDDF 418 (518)
T ss_pred CcEEEEEeCHH-------HHCCchHHHHHHHHHHhCCCCcce-EEEEEechHhcCCHHHHHHHHHHHHCCC--EEEEECC
Confidence 45565566543 233445667788888888865433 3333322211 22346678899999997 3444444
Q ss_pred -----cHHHHHHHhhcCCceEEeeecCcCC--------cCchhhhHHHHHHhCCeEEEec
Q 025575 160 -----CAATIRRAHAVHPITAVQLEWSLWS--------RDVEAEIVPTCRELGIGIVAYG 206 (250)
Q Consensus 160 -----~~~~l~~~~~~~~~~~~q~~~n~~~--------~~~~~~~~~~~~~~gi~via~s 206 (250)
+...+.. .+++.+=+.-+... ......+++.|++.|+.++|-+
T Consensus 419 Gtg~ssl~~L~~----l~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAEG 474 (518)
T PRK10551 419 GTGHSALIYLER----FTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAEG 474 (518)
T ss_pred CCCchhHHHHHh----CCCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 3333333 34455444432221 1122468999999999999755
No 198
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=37.90 E-value=2.9e+02 Score=24.46 Aligned_cols=24 Identities=13% Similarity=0.358 Sum_probs=14.9
Q ss_pred ChHHHHHHH-------HHHHHcCCCeEeCcC
Q 025575 36 PEPDMIALI-------HHAINSGITLLDTSD 59 (250)
Q Consensus 36 ~~~~~~~~l-------~~A~~~Gi~~~DtA~ 59 (250)
+.++..+++ +.|.++|+..++--.
T Consensus 143 t~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ 173 (338)
T cd02933 143 TTEEIPGIVADFRQAARNAIEAGFDGVEIHG 173 (338)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 455554444 455678999888643
No 199
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=37.69 E-value=1.9e+02 Score=25.74 Aligned_cols=64 Identities=11% Similarity=0.154 Sum_probs=39.0
Q ss_pred cceEecCcccHHHHHHHhhc-CCceEEeeecCcCCcCc-hhhhHHHHHHhCCeEEEeccCccCcCC
Q 025575 151 IKYIGLSEACAATIRRAHAV-HPITAVQLEWSLWSRDV-EAEIVPTCRELGIGIVAYGPLGQGFLS 214 (250)
Q Consensus 151 ir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~via~spl~~G~L~ 214 (250)
++..-+...+.+.+++++.. .+..++..+.||..... .+++.+.|+++|+.++.=...+.+.+.
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~ 181 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQ 181 (366)
T ss_pred ceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccccc
Confidence 33334444466777766543 34445556777754322 258999999999999876666544443
No 200
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=37.59 E-value=2.9e+02 Score=24.43 Aligned_cols=99 Identities=17% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCcccEE--------EeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcc-cHHHHHHHhhcCCceEE
Q 025575 106 RACCEASLKRLDIDCIDLY--------YQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEA-CAATIRRAHAVHPITAV 176 (250)
Q Consensus 106 ~~~l~~sL~~L~~d~iDl~--------~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~ 176 (250)
...+-+.|.+.|+++|.+- .++.-.+..+..+.++.+.+..+.-++..+-+... +.+.++.+.+. .++.+
T Consensus 26 ~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~-gvd~i 104 (333)
T TIGR03217 26 VRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDA-GARTV 104 (333)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHC-CCCEE
Q ss_pred eeecCcCCcCchhhhHHHHHHhCCeEEEe
Q 025575 177 QLEWSLWSRDVEAEIVPTCRELGIGIVAY 205 (250)
Q Consensus 177 q~~~n~~~~~~~~~~~~~~~~~gi~via~ 205 (250)
.+-.+.-.-....+.+++++++|..+...
T Consensus 105 ri~~~~~e~d~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 105 RVATHCTEADVSEQHIGMARELGMDTVGF 133 (333)
T ss_pred EEEeccchHHHHHHHHHHHHHcCCeEEEE
No 201
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=37.19 E-value=2.3e+02 Score=23.07 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEec
Q 025575 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGL 156 (250)
Q Consensus 102 ~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGv 156 (250)
...+.+.+++.++.+|.+ +.++ .+...+.++..+.++.+.++| +..|=+
T Consensus 13 ~~~~~~g~~~~a~~~g~~---~~~~--~~~~~d~~~q~~~i~~~i~~~-~d~Iiv 61 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYE---VEIV--FDAQNDPEEQIEQIEQAISQG-VDGIIV 61 (257)
T ss_dssp HHHHHHHHHHHHHHHTCE---EEEE--EESTTTHHHHHHHHHHHHHTT-ESEEEE
T ss_pred HHHHHHHHHHHHHHcCCE---EEEe--CCCCCCHHHHHHHHHHHHHhc-CCEEEe
Confidence 455777888888888753 2222 233344566777777777766 444433
No 202
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=37.13 E-value=37 Score=28.70 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHc-CCcceEecCcc-------cHHHHHHHhhcCCceEEee
Q 025575 107 ACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE-GKIKYIGLSEA-------CAATIRRAHAVHPITAVQL 178 (250)
Q Consensus 107 ~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~-G~ir~iGvSn~-------~~~~l~~~~~~~~~~~~q~ 178 (250)
..++..|+..+ +|||.+=+-|-......+++++..-++..+ |---+.|=.-+ ..++..+.+....|+++.+
T Consensus 25 ~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEi 103 (244)
T PF02679_consen 25 RYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIEI 103 (244)
T ss_dssp HHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE
T ss_pred HHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEEe
Confidence 56778888888 899999999865544334444443333333 32233332111 1122222222344555555
Q ss_pred ecCcCCcCch--hhhHHHHHHhCCeEEE
Q 025575 179 EWSLWSRDVE--AEIVPTCRELGIGIVA 204 (250)
Q Consensus 179 ~~n~~~~~~~--~~~~~~~~~~gi~via 204 (250)
.=..+....+ ..+++.++++|..|++
T Consensus 104 SdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 104 SDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp --SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred cCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 4333333222 2677777777776664
No 203
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.11 E-value=2.9e+02 Score=24.48 Aligned_cols=86 Identities=14% Similarity=0.084 Sum_probs=54.7
Q ss_pred EEeecCCCC-----------CCHHHHHHHHHHHHHc-CC---cceEecC--cccHHHHHHHhhc---CCceEEeeecCcC
Q 025575 124 YYQHRVDTK-----------IPIEVTIGELKKLVEE-GK---IKYIGLS--EACAATIRRAHAV---HPITAVQLEWSLW 183 (250)
Q Consensus 124 ~~lh~p~~~-----------~~~~~~~~~l~~l~~~-G~---ir~iGvS--n~~~~~l~~~~~~---~~~~~~q~~~n~~ 183 (250)
+-||.+++. .++++++++++++.+. +. ++++-+. |.+.++++++.+. .+..++-++||+.
T Consensus 212 iSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~VnLIpynp~ 291 (343)
T PRK14469 212 LSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKVFVNLIPVNPT 291 (343)
T ss_pred EEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCcEEEEEecCCC
Confidence 457777542 3567888888887765 32 3444444 4555666665543 4456778899986
Q ss_pred CcC---ch----hhhHHHHHHhCCeEEEeccCc
Q 025575 184 SRD---VE----AEIVPTCRELGIGIVAYGPLG 209 (250)
Q Consensus 184 ~~~---~~----~~~~~~~~~~gi~via~spl~ 209 (250)
... +. ..+.+..+++|+.+....+.+
T Consensus 292 ~~~~~~ps~e~l~~f~~~l~~~gi~vtvr~~~g 324 (343)
T PRK14469 292 VPGLEKPSRERIERFKEILLKNGIEAEIRREKG 324 (343)
T ss_pred CccCCCCCHHHHHHHHHHHHHCCCeEEEeCCCC
Confidence 532 11 256667778899999876664
No 204
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=37.10 E-value=3.6e+02 Score=25.28 Aligned_cols=151 Identities=11% Similarity=0.055 Sum_probs=74.7
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCCC-CCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMR-ERVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~ 114 (250)
+++-....++.|.+.||..|=..++-.+-++-+..-++.++... -++.|+-... +.++.+.+.+.+++ +.
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~s--------p~~t~~y~~~~a~~-l~ 173 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTS--------PVHTLNYYLSLVKE-LV 173 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeC--------CcCcHHHHHHHHHH-HH
Confidence 34567788999999999888777766532222222233333211 1233333322 13456666665555 45
Q ss_pred HcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccH-----HHHHHHhhcCCceEEeeecCcCCcC---
Q 025575 115 RLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACA-----ATIRRAHAVHPITAVQLEWSLWSRD--- 186 (250)
Q Consensus 115 ~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~-----~~l~~~~~~~~~~~~q~~~n~~~~~--- 186 (250)
.+|.+ .+.|-..--.....++.+.+..+++...+ -||+=.|+- .....+++.+ .+.+..-.+++-..
T Consensus 174 ~~Gad---~I~IkDtaG~l~P~~v~~Lv~alk~~~~~-pi~~H~Hnt~GlA~An~laAieAG-ad~vD~ai~g~g~gagN 248 (468)
T PRK12581 174 EMGAD---SICIKDMAGILTPKAAKELVSGIKAMTNL-PLIVHTHATSGISQMTYLAAVEAG-ADRIDTALSPFSEGTSQ 248 (468)
T ss_pred HcCCC---EEEECCCCCCcCHHHHHHHHHHHHhccCC-eEEEEeCCCCccHHHHHHHHHHcC-CCEEEeeccccCCCcCC
Confidence 67764 34443322223345566666666664433 466655532 2222233332 34444444444332
Q ss_pred -chhhhHHHHHHhCC
Q 025575 187 -VEAEIVPTCRELGI 200 (250)
Q Consensus 187 -~~~~~~~~~~~~gi 200 (250)
..+.++..++..|+
T Consensus 249 ~~tE~lv~~L~~~g~ 263 (468)
T PRK12581 249 PATESMYLALKEAGY 263 (468)
T ss_pred hhHHHHHHHHHhcCC
Confidence 11456666665544
No 205
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=37.07 E-value=1.1e+02 Score=26.72 Aligned_cols=95 Identities=15% Similarity=0.130 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCC----CHHHHHHHHHHHHHcCCcceEecCcccHHHHHH--HhhcCCce
Q 025575 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI----PIEVTIGELKKLVEEGKIKYIGLSEACAATIRR--AHAVHPIT 174 (250)
Q Consensus 101 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~----~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~--~~~~~~~~ 174 (250)
..+.+++.+.+-+++.++|++=++.+-.-++.. ....++++|++..+++.-. -++..+-. ++.. ...
T Consensus 130 ~~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AAl~~-g~~ 202 (295)
T PF07994_consen 130 QVEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE------ISASMLYAYAALEA-GVP 202 (295)
T ss_dssp HHHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHHHHT-TEE
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc------CChHHHHHHHHHHC-CCC
Confidence 356678889999999998754444333322211 2335788888888876542 22222221 1221 211
Q ss_pred EEeeecCcCCcCchhhhHHHHHHhCCeEEE
Q 025575 175 AVQLEWSLWSRDVEAEIVPTCRELGIGIVA 204 (250)
Q Consensus 175 ~~q~~~n~~~~~~~~~~~~~~~~~gi~via 204 (250)
-+.+.|-.-.....+.+.++++|+.+..
T Consensus 203 --fvN~tP~~~a~~P~l~ela~~~gvpi~G 230 (295)
T PF07994_consen 203 --FVNGTPSNIADDPALVELAEEKGVPIAG 230 (295)
T ss_dssp --EEE-SSSTTTTSHHHHHHHHHHTEEEEE
T ss_pred --eEeccCccccCCHHHHHHHHHcCCCeec
Confidence 2333443332235889999999998874
No 206
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=37.05 E-value=2.8e+02 Score=24.11 Aligned_cols=134 Identities=12% Similarity=0.075 Sum_probs=78.1
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcC---------CcCCC---ChHHHHHHHhcCC-CCCCEEEEeeeCcccCCCCCCCCCH
Q 025575 36 PEPDMIALIHHAINSGITLLDTSD---------IYGPY---TNEILVGKALKGG-MRERVELATKFGISFADGGKIRGDP 102 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~---------~Yg~g---~sE~~lg~~l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~ 102 (250)
+.++..+..+.+.+.|+..||.-- .|+.. ...+++.+.++.. .+-.+-|+.|+...+.. ..
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~------~~ 146 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD------AH 146 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC------Cc
Confidence 567788888888889999888632 22210 1234555555543 12235577787432211 11
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeecCCCCC--CHHHHHHHHHHHHHcCCcceEecCcc-cHHHHHHHhhcCCceEEeee
Q 025575 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTKI--PIEVTIGELKKLVEEGKIKYIGLSEA-CAATIRRAHAVHPITAVQLE 179 (250)
Q Consensus 103 ~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~--~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~q~~ 179 (250)
..+ ..+-+.|+..|+ |.+.+|...... .-...|+.+.++++.=.+--|+.... +++.+.++++....+.+++-
T Consensus 147 ~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 147 INA-VEAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIG 222 (319)
T ss_pred chH-HHHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEC
Confidence 112 234555667775 555667532211 11235788888888766777777764 77888888866666777763
No 207
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=36.73 E-value=2.9e+02 Score=24.18 Aligned_cols=90 Identities=13% Similarity=0.043 Sum_probs=51.4
Q ss_pred EEeecCCCCC-CHHHHHHHHHHHHHcCCcceEecCc---------ccHHHHHHHhhcCCceEEeeecCcCC--cCchhhh
Q 025575 124 YYQHRVDTKI-PIEVTIGELKKLVEEGKIKYIGLSE---------ACAATIRRAHAVHPITAVQLEWSLWS--RDVEAEI 191 (250)
Q Consensus 124 ~~lh~p~~~~-~~~~~~~~l~~l~~~G~ir~iGvSn---------~~~~~l~~~~~~~~~~~~q~~~n~~~--~~~~~~~ 191 (250)
+++-.-|+.. +...+.+.++.+++-+.++.|.+.+ .+.+.++.+.+......+.+..|-.. .....+.
T Consensus 140 VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~~~~a 219 (321)
T TIGR03822 140 VILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHARELTAEARAA 219 (321)
T ss_pred EEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHHHHHH
Confidence 4444334433 2346777788888888776444432 23444554544443233344443111 0111367
Q ss_pred HHHHHHhCCeEEEeccCccCcC
Q 025575 192 VPTCRELGIGIVAYGPLGQGFL 213 (250)
Q Consensus 192 ~~~~~~~gi~via~spl~~G~L 213 (250)
++.+++.||.+...+++..|.-
T Consensus 220 i~~L~~~Gi~v~~q~vLl~gvN 241 (321)
T TIGR03822 220 CARLIDAGIPMVSQSVLLRGVN 241 (321)
T ss_pred HHHHHHcCCEEEEEeeEeCCCC
Confidence 8888899999999899988753
No 208
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=36.57 E-value=2.9e+02 Score=24.79 Aligned_cols=88 Identities=10% Similarity=0.061 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhc--------
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV-------- 170 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-------- 170 (250)
..+++.++.-+.+.|.+.|++. +..++..+..-.+- .-|+.+|...++...++.
T Consensus 5 ~~~~e~L~~~~~~vl~~~G~~e----------------e~A~~vA~~lv~ad--~~G~~SHGv~r~p~yi~~l~~G~i~~ 66 (349)
T COG2055 5 KVSAEELKALIEEVLRKAGVPE----------------EDARAVADVLVAAD--LRGVDSHGVGRLPGYVRRLKAGKINP 66 (349)
T ss_pred EecHHHHHHHHHHHHHHcCCCH----------------HHHHHHHHHHHHHH--hcCCcccchHHHHHHHHHHHcCCcCC
Confidence 4578999999999999999742 22222222221111 246777777666655432
Q ss_pred -CCc-------eEEeeecCcCCcC-----chhhhHHHHHHhCCeEEE
Q 025575 171 -HPI-------TAVQLEWSLWSRD-----VEAEIVPTCRELGIGIVA 204 (250)
Q Consensus 171 -~~~-------~~~q~~~n~~~~~-----~~~~~~~~~~~~gi~via 204 (250)
..+ .+.++.=+-...+ .-+..++.|+++||++++
T Consensus 67 ~a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~va 113 (349)
T COG2055 67 DAEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVA 113 (349)
T ss_pred CCceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEE
Confidence 112 2223322211111 115789999999999986
No 209
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=36.53 E-value=1.7e+02 Score=27.21 Aligned_cols=67 Identities=15% Similarity=0.116 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCcceEecCcccHHHHHHHhhc-------CC-ceEEeeecCcCCcCchhhhHHHHHHhCCeEEEecc
Q 025575 140 GELKKLVEEGKIKYIGLSEACAATIRRAHAV-------HP-ITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGP 207 (250)
Q Consensus 140 ~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-------~~-~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~sp 207 (250)
+-...+-+.|-...+|....+++++++.+.. .+ +-+|-+ .++-.+..+..+++.|.+++|.++..+.
T Consensus 34 eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~e~~~v~l~l~~~V~~veasa 108 (444)
T TIGR02814 34 ELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPALEWGLVDLLLRHGVRIVEASA 108 (444)
T ss_pred HHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCcccHHHHHHHHHHcCCCEEEecc
Confidence 3344566789999999999999998876543 23 555443 2222222335789999999999886653
No 210
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=36.28 E-value=3.1e+02 Score=24.31 Aligned_cols=108 Identities=19% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccEE--------EeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcc-cHHHHHH
Q 025575 96 GKIRGDPAYVRACCEASLKRLDIDCIDLY--------YQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEA-CAATIRR 166 (250)
Q Consensus 96 ~~~~~~~~~i~~~l~~sL~~L~~d~iDl~--------~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~ 166 (250)
....++.+.+.+-++. |.+.|+++|.+- .++.-....+..+.++.+.+....-++..+-+-++ +.+.++.
T Consensus 18 ~~~~f~~~~~~~i~~~-L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~ 96 (337)
T PRK08195 18 VRHQYTLEQVRAIARA-LDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKM 96 (337)
T ss_pred CCCccCHHHHHHHHHH-HHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHH
Q ss_pred HhhcCCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEe
Q 025575 167 AHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 205 (250)
Q Consensus 167 ~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~ 205 (250)
+.+. .++.+.+..+.-......+.+++++++|..+...
T Consensus 97 a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 97 AYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
No 211
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=36.19 E-value=2.6e+02 Score=23.38 Aligned_cols=86 Identities=10% Similarity=0.014 Sum_probs=46.4
Q ss_pred HHcCCCcccEEEeecCCCCCC-HHHHHHHHHHHHHcCCcceEecCc-ccHHHHHHHhhcCCceEEeeecCcCCcC-chhh
Q 025575 114 KRLDIDCIDLYYQHRVDTKIP-IEVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQLEWSLWSRD-VEAE 190 (250)
Q Consensus 114 ~~L~~d~iDl~~lh~p~~~~~-~~~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~ 190 (250)
..+| +|-+++|..+.... -.--|+.+.++.+.-.+.-|.-.. .+.+.+.++++....+.+.+-=-+.... ...+
T Consensus 163 ~~~g---~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~ 239 (253)
T PRK02083 163 EELG---AGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGE 239 (253)
T ss_pred HHcC---CCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHH
Confidence 4455 55667766543211 011256666666665566665443 3677787777654444444411111111 1257
Q ss_pred hHHHHHHhCCeE
Q 025575 191 IVPTCRELGIGI 202 (250)
Q Consensus 191 ~~~~~~~~gi~v 202 (250)
+++.|++.||.+
T Consensus 240 ~~~~~~~~~~~~ 251 (253)
T PRK02083 240 LKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHCCCcc
Confidence 889999888865
No 212
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=36.03 E-value=1.1e+02 Score=27.76 Aligned_cols=77 Identities=17% Similarity=0.216 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHcC-CcceEecCcc---cHHHHHHHhhcCC-ceEEee---ecCcCCcCchhhhHHHHHHhCCeEEEecc
Q 025575 136 EVTIGELKKLVEEG-KIKYIGLSEA---CAATIRRAHAVHP-ITAVQL---EWSLWSRDVEAEIVPTCRELGIGIVAYGP 207 (250)
Q Consensus 136 ~~~~~~l~~l~~~G-~ir~iGvSn~---~~~~l~~~~~~~~-~~~~q~---~~n~~~~~~~~~~~~~~~~~gi~via~sp 207 (250)
..+++.++.|..+| .|.++.|-+. ++++|++++.-.. ...+|. +...+. +..++-+.|+++|+.+..=..
T Consensus 102 ~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQ--pI~ei~~i~k~~~i~fHvDAv 179 (386)
T COG1104 102 PAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQ--PIAEIGEICKERGILFHVDAV 179 (386)
T ss_pred HHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecc--cHHHHHHHHHHcCCeEEEehh
Confidence 46888889997778 6899999865 6788888876422 223332 222222 246999999999988876665
Q ss_pred CccCcCC
Q 025575 208 LGQGFLS 214 (250)
Q Consensus 208 l~~G~L~ 214 (250)
-+-|.+.
T Consensus 180 Qa~Gkip 186 (386)
T COG1104 180 QAVGKIP 186 (386)
T ss_pred hhcCcee
Confidence 5555554
No 213
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=35.87 E-value=1.1e+02 Score=26.57 Aligned_cols=62 Identities=16% Similarity=0.083 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCCCcccEEEeecCCCCCCH---HHHHHHHHHHHHcCCcceEecCcccHHHHHHHhh
Q 025575 105 VRACCEASLKRLDIDCIDLYYQHRVDTKIPI---EVTIGELKKLVEEGKIKYIGLSEACAATIRRAHA 169 (250)
Q Consensus 105 i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~---~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~ 169 (250)
.++.+.-.+.-++ ..+++++..|....+. .++++.|.++.++|. +.|=+|+|..+.++.+.+
T Consensus 141 ~kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~d 205 (293)
T COG1131 141 MKQRLSIALALLH--DPELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHILEEAEELCD 205 (293)
T ss_pred HHHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhCC
Confidence 4444444444443 4689999998777664 478999999999997 678899999999988754
No 214
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=35.74 E-value=2.8e+02 Score=23.70 Aligned_cols=110 Identities=11% Similarity=-0.026 Sum_probs=62.4
Q ss_pred CceeecccccCCCCCCCCChHHHHHHHHHHHHcCCCeEeCcC-CcCCCChHHHHHHHhcCCCCCCEEEEeeeCcccCCCC
Q 025575 18 SAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSD-IYGPYTNEILVGKALKGGMRERVELATKFGISFADGG 96 (250)
Q Consensus 18 s~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~-~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~ 96 (250)
..||.+.|......+...+.....+-....+....|.++.-. .|.. .+++.+-++.+. ..+++..+-|.....+
T Consensus 3 i~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~-p~~~t~~~W~~~-~p~~FrFsvK~~~~iT--- 77 (263)
T COG1801 3 IYIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAP-PSPETVLRWAEE-TPDDFRFSVKAPRAIT--- 77 (263)
T ss_pred eEEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCC-CCHHHHHHHHHh-CCCCeEEEEEeccccc---
Confidence 356777776643222222222222323344455677766533 3432 378888888875 7899999999875421
Q ss_pred CCCCCH---HHHHHHHHHHHHHcCCCcccEEEeecCCCCC
Q 025575 97 KIRGDP---AYVRACCEASLKRLDIDCIDLYYQHRVDTKI 133 (250)
Q Consensus 97 ~~~~~~---~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~ 133 (250)
+..... ..+.+.+.+-++.|+ +.+..+++.-|....
T Consensus 78 H~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf~ 116 (263)
T COG1801 78 HQRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSFK 116 (263)
T ss_pred chhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCccc
Confidence 011122 234444444455666 589999999886543
No 215
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=35.67 E-value=1.2e+02 Score=27.71 Aligned_cols=74 Identities=12% Similarity=0.007 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcCCcceEecCcccHHHHHHHhhcCCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEeccCccC
Q 025575 138 TIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQG 211 (250)
Q Consensus 138 ~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G 211 (250)
.-+.+..|.++|.--..|+.+-+-...+.+....-..+.+-+|+++......+..+..++.++.|.+--|++.+
T Consensus 279 ~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~ 352 (402)
T PRK09536 279 AARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAAR 352 (402)
T ss_pred HHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCC
Confidence 45778889999999999999876555555444444456677899988766678889999999999988888744
No 216
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=35.35 E-value=81 Score=27.87 Aligned_cols=94 Identities=19% Similarity=0.198 Sum_probs=56.7
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCC----C---CCCEEEEeeeCcccCCCCCCCCCHHHHHH
Q 025575 35 EPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGG----M---RERVELATKFGISFADGGKIRGDPAYVRA 107 (250)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~----~---R~~~~i~tK~~~~~~~~~~~~~~~~~i~~ 107 (250)
.+.++...+++.|++.|++=+=- -| -|.++.+-|... . -.++-++|-.. +.+
T Consensus 43 Ls~eei~~~~~~~~~~Gv~kvRl---TG---GEPllR~dl~eIi~~l~~~~~~~islTTNG~---------------~L~ 101 (322)
T COG2896 43 LSLEEIRRLVRAFAELGVEKVRL---TG---GEPLLRKDLDEIIARLARLGIRDLSLTTNGV---------------LLA 101 (322)
T ss_pred CCHHHHHHHHHHHHHcCcceEEE---eC---CCchhhcCHHHHHHHHhhcccceEEEecchh---------------hHH
Confidence 36889999999999999987652 34 455555444332 2 24555555532 233
Q ss_pred HHHHHHHHcCCCcccEEEeecCCCC--------CCHHHHHHHHHHHHHcCC
Q 025575 108 CCEASLKRLDIDCIDLYYQHRVDTK--------IPIEVTIGELKKLVEEGK 150 (250)
Q Consensus 108 ~l~~sL~~L~~d~iDl~~lh~p~~~--------~~~~~~~~~l~~l~~~G~ 150 (250)
.....|+.-|++.|-+ -||..+++ ..+.++++.++++++.|.
T Consensus 102 ~~a~~Lk~AGl~rVNV-SLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl 151 (322)
T COG2896 102 RRAADLKEAGLDRVNV-SLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGL 151 (322)
T ss_pred HHHHHHHHcCCcEEEe-ecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 4455566666555432 23444332 235677888888888776
No 217
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=35.35 E-value=2.6e+02 Score=23.13 Aligned_cols=85 Identities=12% Similarity=-0.010 Sum_probs=44.7
Q ss_pred HHHHHcCCCcccEEEeecCCCCCCH-HHHHHHHHHHHHcCCcceEecCcc-cHHHHHHHhhcCCceEEeeecCcCCcCc-
Q 025575 111 ASLKRLDIDCIDLYYQHRVDTKIPI-EVTIGELKKLVEEGKIKYIGLSEA-CAATIRRAHAVHPITAVQLEWSLWSRDV- 187 (250)
Q Consensus 111 ~sL~~L~~d~iDl~~lh~p~~~~~~-~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~q~~~n~~~~~~- 187 (250)
+.++.+| +|.+.+|..+..... .--++.++++++.-.+.-|..... +++.+.++++....+.+++---+.....
T Consensus 156 ~~l~~~G---~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~ 232 (243)
T cd04731 156 KEVEELG---AGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYT 232 (243)
T ss_pred HHHHHCC---CCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCC
Confidence 3345555 556667665432111 013555666666556666655543 6778887777655555555322222211
Q ss_pred hhhhHHHHHHh
Q 025575 188 EAEIVPTCREL 198 (250)
Q Consensus 188 ~~~~~~~~~~~ 198 (250)
..++.+.|++|
T Consensus 233 ~~~~~~~~~~~ 243 (243)
T cd04731 233 IAELKEYLAER 243 (243)
T ss_pred HHHHHHHHhhC
Confidence 14566666654
No 218
>PHA02128 hypothetical protein
Probab=34.87 E-value=1.4e+02 Score=21.90 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHcCCcceEecCcccHHHHHHHhhc------------------CCceEE---eeecCcCCcCchhhhHHHH
Q 025575 137 VTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV------------------HPITAV---QLEWSLWSRDVEAEIVPTC 195 (250)
Q Consensus 137 ~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~------------------~~~~~~---q~~~n~~~~~~~~~~~~~~ 195 (250)
..+..-.++..+|-+|-|-....+..++..+... +.+... ..+|.+-.+....++.+|+
T Consensus 61 gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydwa 140 (151)
T PHA02128 61 GLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDWA 140 (151)
T ss_pred hHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhhc
Confidence 4566667888888888888776666665554322 112222 3467776665557999999
Q ss_pred HHhCCeEEEe
Q 025575 196 RELGIGIVAY 205 (250)
Q Consensus 196 ~~~gi~via~ 205 (250)
-.||+.++.+
T Consensus 141 gthgvefvim 150 (151)
T PHA02128 141 GTHGVEFVIM 150 (151)
T ss_pred ccCceEEEEe
Confidence 9999998764
No 219
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=34.78 E-value=3.9e+02 Score=25.01 Aligned_cols=48 Identities=8% Similarity=0.027 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG 149 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G 149 (250)
..+++.+.+.++...++.|+..+ .+...+...+...+.+.++++++.|
T Consensus 221 ~rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~~~~~~~l~~~l~~~~ 268 (497)
T TIGR02026 221 HRDPKKFVDEIEWLVRTHGVGFF---ILADEEPTINRKKFQEFCEEIIARN 268 (497)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEE---EEEecccccCHHHHHHHHHHHHhcC
Confidence 34788899999998888886543 3333333334455666777777776
No 220
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=34.65 E-value=2.3e+02 Score=25.90 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=29.2
Q ss_pred HHHHHHHhhc----CCceEEeeecCcCCcCch--hhhHHHHHHhCCeEEEeccC
Q 025575 161 AATIRRAHAV----HPITAVQLEWSLWSRDVE--AEIVPTCRELGIGIVAYGPL 208 (250)
Q Consensus 161 ~~~l~~~~~~----~~~~~~q~~~n~~~~~~~--~~~~~~~~~~gi~via~spl 208 (250)
.+.++++++. .-+..+|-+-.+.-...+ ..+.+.|.++|+-+|.=..-
T Consensus 174 i~al~~ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQ 227 (404)
T COG4992 174 IEALEAAIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQ 227 (404)
T ss_pred HHHHHHHhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccc
Confidence 4555555544 123445666655554433 58888999999888864443
No 221
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=34.57 E-value=3.4e+02 Score=24.32 Aligned_cols=87 Identities=17% Similarity=0.104 Sum_probs=52.3
Q ss_pred cEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhc-CCceEEeeecCcCCcCc-hhhhHHHHHHhC
Q 025575 122 DLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV-HPITAVQLEWSLWSRDV-EAEIVPTCRELG 199 (250)
Q Consensus 122 Dl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~g 199 (250)
|-+++-.|.. ..+...+..+...+.++-.-+...+.+.++++++. .++.++..+-||.-... .+++.+.|+++|
T Consensus 91 D~Vl~~~p~y----~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g 166 (382)
T TIGR02080 91 DLLVAPHDCY----GGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVG 166 (382)
T ss_pred CEEEEcCCCc----HHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcC
Confidence 6566655533 23444555555555555444445567888877643 34445555666654322 258999999999
Q ss_pred CeEEEeccCccCc
Q 025575 200 IGIVAYGPLGQGF 212 (250)
Q Consensus 200 i~via~spl~~G~ 212 (250)
+.++.=...+.+.
T Consensus 167 ~~vvvD~a~~~~~ 179 (382)
T TIGR02080 167 AVVVVDNTFLSPA 179 (382)
T ss_pred CEEEEECCCcccc
Confidence 9998666655443
No 222
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=34.53 E-value=2.9e+02 Score=23.47 Aligned_cols=130 Identities=18% Similarity=0.159 Sum_probs=75.4
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCc---CCcCCC----ChHHHHHHHhcCCCC-CCEEEEeeeCcccCCCCCCCCCHHHHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTS---DIYGPY----TNEILVGKALKGGMR-ERVELATKFGISFADGGKIRGDPAYVRA 107 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA---~~Yg~g----~sE~~lg~~l~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~i~~ 107 (250)
+.++..+..+.+.+.|+..|+.- +....+ ...+.+.+.++...+ -++-|..|+... .+.+.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~--------~~~~~~~~ 180 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY--------FDLEDIVE 180 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC--------CCHHHHHH
Confidence 45678888888888899998853 222211 234555555554321 156688898753 34455544
Q ss_pred HHHHHHHHcCCCcccEEEeecCCC-------------CC--------CH-HHHHHHHHHHHHcC--CcceEecCcc-cHH
Q 025575 108 CCEASLKRLDIDCIDLYYQHRVDT-------------KI--------PI-EVTIGELKKLVEEG--KIKYIGLSEA-CAA 162 (250)
Q Consensus 108 ~l~~sL~~L~~d~iDl~~lh~p~~-------------~~--------~~-~~~~~~l~~l~~~G--~ir~iGvSn~-~~~ 162 (250)
.++ .++..|.|. +.+|.-.. .. +. .-.++.+.++++.= .+.-||+... +.+
T Consensus 181 ~a~-~l~~~Gad~---i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~ 256 (289)
T cd02810 181 LAK-AAERAGADG---LTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGE 256 (289)
T ss_pred HHH-HHHHcCCCE---EEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHH
Confidence 433 466677554 44443110 00 00 12466777777654 6778888776 577
Q ss_pred HHHHHhhcCCceEEee
Q 025575 163 TIRRAHAVHPITAVQL 178 (250)
Q Consensus 163 ~l~~~~~~~~~~~~q~ 178 (250)
.+.+++... .+.+|+
T Consensus 257 da~~~l~~G-Ad~V~v 271 (289)
T cd02810 257 DVLEMLMAG-ASAVQV 271 (289)
T ss_pred HHHHHHHcC-ccHheE
Confidence 787777654 566665
No 223
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=34.48 E-value=1.7e+02 Score=29.15 Aligned_cols=73 Identities=14% Similarity=0.184 Sum_probs=49.0
Q ss_pred HHHHHHHH--HHHHcCCcceEecCcccHHHH---------------HHHhhcCCceEEeeecCcCCcCchhhhHHHHHHh
Q 025575 136 EVTIGELK--KLVEEGKIKYIGLSEACAATI---------------RRAHAVHPITAVQLEWSLWSRDVEAEIVPTCREL 198 (250)
Q Consensus 136 ~~~~~~l~--~l~~~G~ir~iGvSn~~~~~l---------------~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~ 198 (250)
+.+.++++ +|.++ |.-+|++--..+.+ +.++.++-++++-+.++-..+ .+.+.|+..
T Consensus 247 ~~iv~~~~~~~l~~~--I~l~GiCCTg~e~~R~~~gv~~~Gn~~~qe~~i~TGavD~~VvD~QCi~p----~l~~~a~c~ 320 (784)
T TIGR00314 247 RPIADYLEENGMEDE--VELCGICCTAIDMTRYNAKAKIVGPLSRQLRVIRAGVADVIIVDEQCIRA----DILEECKKM 320 (784)
T ss_pred HHHHHHHhChhHHHH--hceeeeeccccHHhhhccCCcccCcHHHHHHHHHcCCCcEEEEecccCcc----cHHHHHHhc
Confidence 45566666 45554 77777775443322 223445777888887776654 789999999
Q ss_pred CCeEEEeccCccCcCC
Q 025575 199 GIGIVAYGPLGQGFLS 214 (250)
Q Consensus 199 gi~via~spl~~G~L~ 214 (250)
++.+|+.++.+.--|-
T Consensus 321 ~tklItTs~ka~~gl~ 336 (784)
T TIGR00314 321 GIPLIATNDKACLGLP 336 (784)
T ss_pred CCeEEEcchHHhcCCC
Confidence 9999999998754344
No 224
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=34.47 E-value=3.2e+02 Score=23.96 Aligned_cols=134 Identities=13% Similarity=0.072 Sum_probs=77.2
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCc----------CCC--ChHHHHHHHhcCC-CCCCEEEEeeeCcccCCCCCCCCCH
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIY----------GPY--TNEILVGKALKGG-MRERVELATKFGISFADGGKIRGDP 102 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Y----------g~g--~sE~~lg~~l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~ 102 (250)
+.++..++.+.+.+.|+..||.--.. |.. .+-..+.+.++.. .--++-|+.|+..-+. .+.
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~------~~~ 148 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWA------PEH 148 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcccc------CCc
Confidence 56677777777788999999953222 210 1233444444332 1113457777643221 111
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeecCCCCCCH--HHHHHHHHHHHHcCCcceEecCcc-cHHHHHHHhhcCCceEEeee
Q 025575 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTKIPI--EVTIGELKKLVEEGKIKYIGLSEA-CAATIRRAHAVHPITAVQLE 179 (250)
Q Consensus 103 ~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~--~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~q~~ 179 (250)
.... .+-+.++..|+ |.+.+|.-...... ..-|+.+.++++.=.|--||...- +++.+.++++....+.+|+-
T Consensus 149 ~~~~-~~a~~le~~G~---d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 149 RNCV-EIAQLAEDCGI---QALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred chHH-HHHHHHHHhCC---CEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 1121 23344666774 66778864322111 124778888888777888887765 78888888877667777773
No 225
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=34.40 E-value=1.6e+02 Score=24.41 Aligned_cols=40 Identities=13% Similarity=0.050 Sum_probs=29.7
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcC-CCChHHHHHHHhc
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYG-PYTNEILVGKALK 75 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-~g~sE~~lg~~l~ 75 (250)
++++..++.+.+++.|..|+=|+..|+ .|.+.+.+....+
T Consensus 134 ~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~ 174 (221)
T PRK00507 134 TDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRE 174 (221)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHH
Confidence 567788899999999999999988885 3555555554433
No 226
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=34.40 E-value=3.5e+02 Score=24.44 Aligned_cols=123 Identities=14% Similarity=0.054 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCcCC--CChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHH
Q 025575 38 PDMIALIHHAINSGITLLDTSDIYGP--YTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (250)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~ 115 (250)
++..++++.|++.|+.-|=+...|.+ +.++..+-+.++...+-...|....-... ....+.+++.++.+. .
T Consensus 167 ~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~------~~e~~av~~~~~~a~-~ 239 (415)
T cd01297 167 AKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEG------DSILEALDELLRLGR-E 239 (415)
T ss_pred HHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccc------ccHHHHHHHHHHHHH-H
Confidence 34567788889999987766555643 45777777777654344555655543210 112333444443332 2
Q ss_pred cCCCcccEEEeecCCCC----CCHHHHHHHHHHHHHcCCcceEecCccc---HHHHHHHhhc
Q 025575 116 LDIDCIDLYYQHRVDTK----IPIEVTIGELKKLVEEGKIKYIGLSEAC---AATIRRAHAV 170 (250)
Q Consensus 116 L~~d~iDl~~lh~p~~~----~~~~~~~~~l~~l~~~G~ir~iGvSn~~---~~~l~~~~~~ 170 (250)
.+. =+.+.|-.... ....++++.+++++++|.--...++.+. ...+.++++.
T Consensus 240 ~g~---r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~~~~~~~l~~~ 298 (415)
T cd01297 240 TGR---PVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGAGSEDDVRRIMAH 298 (415)
T ss_pred hCC---CEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCcHHHHHHHHcC
Confidence 343 35666654322 2456678888888888854344444432 4455555554
No 227
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=34.06 E-value=3.2e+02 Score=23.85 Aligned_cols=163 Identities=10% Similarity=0.095 Sum_probs=89.5
Q ss_pred ChHHHHHHHHHHHHcC-CC--eEeCcCCcCCCChHHHHHHHhcCCCCC-CEEEEeeeCcccCC--CCCCCCCHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSG-IT--LLDTSDIYGPYTNEILVGKALKGGMRE-RVELATKFGISFAD--GGKIRGDPAYVRACC 109 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~G-i~--~~DtA~~Yg~g~sE~~lg~~l~~~~R~-~~~i~tK~~~~~~~--~~~~~~~~~~i~~~l 109 (250)
+.+...++++...+.+ +. .+.|-+.+- +++.+.. +++..-. .|.|..-....... .....++.+.+.+++
T Consensus 86 ~~~~~~~i~~~l~~~~~~~~i~~esrpd~i---~~e~L~~-l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai 161 (313)
T TIGR01210 86 PKETRNYIFEKIAQRDNLKEVVVESRPEFI---DEEKLEE-LRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAA 161 (313)
T ss_pred CHHHHHHHHHHHHhcCCcceEEEEeCCCcC---CHHHHHH-HHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHH
Confidence 4555667777776665 32 445555444 5666655 4543322 45554443322111 123456788888887
Q ss_pred HHHHHHcCCCcccEEEeecCCC---CCCHHHHHHHHHHHHHcCCcceEecCcccHH---HHHHHhhcCCceEEeeecCcC
Q 025575 110 EASLKRLDIDCIDLYYQHRVDT---KIPIEVTIGELKKLVEEGKIKYIGLSEACAA---TIRRAHAVHPITAVQLEWSLW 183 (250)
Q Consensus 110 ~~sL~~L~~d~iDl~~lh~p~~---~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~---~l~~~~~~~~~~~~q~~~n~~ 183 (250)
+.. +..|+. +-.++|-.+.. ...+++..+.++.+..-+ .+|.+...++. .+.++...+. |.+.
T Consensus 162 ~~~-~~~Gi~-v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~--~~vs~~~l~v~~gT~l~~~~~~G~-------~~pp 230 (313)
T TIGR01210 162 ELA-RKYGAG-VKAYLLFKPPFLSEKEAIADMISSIRKCIPVT--DTVSINPTNVQKGTLVEFLWNRGL-------YRPP 230 (313)
T ss_pred HHH-HHcCCc-EEEEEEecCCCCChhhhHHHHHHHHHHHHhcC--CcEEEECCEEeCCCHHHHHHHcCC-------CCCC
Confidence 764 556876 55555554421 123455556667666665 67777665432 4555544332 2222
Q ss_pred CcCchhhhHHHHHHhCCeEEEeccCccCcCC
Q 025575 184 SRDVEAEIVPTCRELGIGIVAYGPLGQGFLS 214 (250)
Q Consensus 184 ~~~~~~~~~~~~~~~gi~via~spl~~G~L~ 214 (250)
..+...+++..+++.++.|+. -|.+.|.-.
T Consensus 231 ~lws~~e~l~e~~~~~~~~~~-d~~g~~~~r 260 (313)
T TIGR01210 231 WLWSVAEVLKEAKKIGAEVLS-DPVGAGSDR 260 (313)
T ss_pred CHHHHHHHHHHHHhhCCeEEe-cCCCCCCcC
Confidence 222235788888888876554 688877555
No 228
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=33.92 E-value=2.3e+02 Score=26.62 Aligned_cols=138 Identities=17% Similarity=0.176 Sum_probs=76.5
Q ss_pred HHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC-CCHHHHHHHHHHH
Q 025575 67 EILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPIEVTIGELKKL 145 (250)
Q Consensus 67 E~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~-~~~~~~~~~l~~l 145 (250)
-+-+|.+|+. +.+++|+-.+... +.....+..-+.+.+++-++. .--+-+.--+.. .+.......+..+
T Consensus 341 ~~dlG~~L~~--~~~l~VsINl~a~-------Dl~s~rli~~~~~~l~~~~v~-pqQI~lElTER~f~D~~~~~~iI~r~ 410 (524)
T COG4943 341 FRDLGDLLRQ--HRDLHVSINLSAS-------DLASPRLIDRLNRKLAQYQVR-PQQIALELTERTFADPKKMTPIILRL 410 (524)
T ss_pred HHHhHHHHHh--CcceEEEEeeeeh-------hhcCchHHHHHHHHHHhcCcC-hHHheeehhhhhhcCchhhhHHHHHH
Confidence 3445666664 6677787777654 444455666677777776653 222222221111 2344567788999
Q ss_pred HHcCCcceE-----ecCcccHHHHHHH----hhcCCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEec----------
Q 025575 146 VEEGKIKYI-----GLSEACAATIRRA----HAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYG---------- 206 (250)
Q Consensus 146 ~~~G~ir~i-----GvSn~~~~~l~~~----~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~s---------- 206 (250)
++.|.--+| |-|| ..-|.++ +++.+-=+--+.++.........+++.+|.+|+.+++=+
T Consensus 411 ReaG~~IyIDDFGTGYSn--L~YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaEGVEteeQ~~~L 488 (524)
T COG4943 411 REAGHEIYIDDFGTGYSN--LHYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAEGVETEEQVDWL 488 (524)
T ss_pred HhcCCeEEEccCcCcchh--HHHHhhCCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEeecccHHHHHHHH
Confidence 999985554 3443 3333332 111110011123333333334678888888888888643
Q ss_pred -----cCccCcCCCCC
Q 025575 207 -----PLGQGFLSSGP 217 (250)
Q Consensus 207 -----pl~~G~L~~g~ 217 (250)
++|+|=|. +|
T Consensus 489 R~~Gv~~gQGW~f-sk 503 (524)
T COG4943 489 RKRGVHYGQGWLF-SK 503 (524)
T ss_pred HHcCCcccccccc-CC
Confidence 67888777 55
No 229
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=33.79 E-value=1.5e+02 Score=24.96 Aligned_cols=95 Identities=14% Similarity=0.084 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHH-HHHcCCcceEecCcc-c----HHHHHHHh---hcCCceEEe
Q 025575 107 ACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKK-LVEEGKIKYIGLSEA-C----AATIRRAH---AVHPITAVQ 177 (250)
Q Consensus 107 ~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~-l~~~G~ir~iGvSn~-~----~~~l~~~~---~~~~~~~~q 177 (250)
+.++..|+-+| +|||.+=+-|-......++.++..-+ +++.|---+.| ..+ . ...+++.+ ....++++.
T Consensus 12 ~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf~~IE 89 (237)
T TIGR03849 12 KFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGFEAVE 89 (237)
T ss_pred HHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCCCEEE
Confidence 55677888888 79999988886554444444444333 34444444445 111 1 11122221 123455555
Q ss_pred eecCcCCcCch--hhhHHHHHHhCCeEE
Q 025575 178 LEWSLWSRDVE--AEIVPTCRELGIGIV 203 (250)
Q Consensus 178 ~~~n~~~~~~~--~~~~~~~~~~gi~vi 203 (250)
+.=..+.-..+ ..+++.++++|..+.
T Consensus 90 iS~G~~~i~~~~~~rlI~~~~~~g~~v~ 117 (237)
T TIGR03849 90 ISDGSMEISLEERCNLIERAKDNGFMVL 117 (237)
T ss_pred EcCCccCCCHHHHHHHHHHHHhCCCeEe
Confidence 54333333222 257777777777666
No 230
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=33.64 E-value=3e+02 Score=23.46 Aligned_cols=16 Identities=19% Similarity=0.555 Sum_probs=14.6
Q ss_pred hhhHHHHHHhCCeEEE
Q 025575 189 AEIVPTCRELGIGIVA 204 (250)
Q Consensus 189 ~~~~~~~~~~gi~via 204 (250)
-.++.+|+.+++.||+
T Consensus 136 v~Li~~c~~~ki~vIs 151 (263)
T COG1179 136 VALIAYCRRNKIPVIS 151 (263)
T ss_pred HHHHHHHHHcCCCEEe
Confidence 4899999999999996
No 231
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=33.54 E-value=3.3e+02 Score=23.79 Aligned_cols=167 Identities=13% Similarity=0.105 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHcCCCeEeCcCCcCC---CChH----HHHHHHhcCC-----------CCCCEEEEeeeCcccC--C-C
Q 025575 37 EPDMIALIHHAINSGITLLDTSDIYGP---YTNE----ILVGKALKGG-----------MRERVELATKFGISFA--D-G 95 (250)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~---g~sE----~~lg~~l~~~-----------~R~~~~i~tK~~~~~~--~-~ 95 (250)
++..+++-..++++|-+.++|+. |.- |-+| +.+.+.++.. ..+...|+.-+++... . .
T Consensus 42 peiv~~vh~df~~aGa~ii~T~T-Yqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~a~E 120 (300)
T COG2040 42 PEIVRNVHADFLRAGADIITTAT-YQATPEGFAERVSEDEAKQLIRRSVELARAARDAYGEENQNIAGSLGPYGAALADE 120 (300)
T ss_pred HHHHHHHHHHHHHhcCcEEeehh-hhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccccccceeccchhhhcChh
Confidence 45667888888999999999874 432 1122 2222222221 3344445666655321 1 1
Q ss_pred --CCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCccc------HHHHHHH
Q 025575 96 --GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEAC------AATIRRA 167 (250)
Q Consensus 96 --~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~------~~~l~~~ 167 (250)
.....+.+.+.+-.+.-++.|.-.-+|++.+.....-...+.+.+.+++. ++=-.|+++-.+ ...+.++
T Consensus 121 y~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~Ea~Aiv~l~~~~---s~p~wISfT~~d~~~lr~Gt~l~ea 197 (300)
T COG2040 121 YRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNITEAEAIVQLVQEF---SKPAWISFTLNDDTRLRDGTPLSEA 197 (300)
T ss_pred hcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCChHHHHHHHHHHHHh---CCceEEEEEeCCCCccCCCccHHHH
Confidence 22345667666777788888877779999998764433334455555555 777788887542 1224444
Q ss_pred hhc--CCceEEeeecCcCCcCchhhhHHHH--HHhCCeEEEecc
Q 025575 168 HAV--HPITAVQLEWSLWSRDVEAEIVPTC--RELGIGIVAYGP 207 (250)
Q Consensus 168 ~~~--~~~~~~q~~~n~~~~~~~~~~~~~~--~~~gi~via~sp 207 (250)
... .-+.+.-+.+|-..++....+++.+ +-.++++++|--
T Consensus 198 a~~~~~~~~iaa~gvNC~~p~~~~a~i~~l~~~~~~~piivYPN 241 (300)
T COG2040 198 AAILAGLPNIAALGVNCCHPDHIPAAIEELSKLLTGKPIIVYPN 241 (300)
T ss_pred HHHHhcCcchhheeeccCChhhhHHHHHHHHhcCCCCceEEcCC
Confidence 332 1112333444555554345777777 344888888865
No 232
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=33.51 E-value=45 Score=26.96 Aligned_cols=82 Identities=17% Similarity=0.197 Sum_probs=47.1
Q ss_pred HHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecC-cccHHHHHHHhhcCCceEEeeecCcCCcCchhh
Q 025575 112 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEWSLWSRDVEAE 190 (250)
Q Consensus 112 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~ 190 (250)
.+..++.||+=+.+ +|.... .-..+...++.+.-.-+.+||. |-+.+.+.++.+...++++|+.-+. ..+
T Consensus 14 ~~~~~g~d~~Gfi~--~~~S~R--~v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e-----~~e 84 (197)
T PF00697_consen 14 LAAELGADYLGFIF--YPKSPR--YVSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE-----SPE 84 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTT--B--HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG------HH
T ss_pred HHHHcCCCEEeeec--CCCCCC--ccCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC-----CHH
Confidence 45568888887763 343222 1234445555555555588876 4578888888888999999985332 124
Q ss_pred hHHHHHHhCCeEE
Q 025575 191 IVPTCRELGIGIV 203 (250)
Q Consensus 191 ~~~~~~~~gi~vi 203 (250)
..+..+ .++.++
T Consensus 85 ~~~~l~-~~~~vi 96 (197)
T PF00697_consen 85 YIKLLR-AGLPVI 96 (197)
T ss_dssp HHHHHH-TTSEEE
T ss_pred HHHHhh-cCceEE
Confidence 444444 345554
No 233
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=33.32 E-value=1.1e+02 Score=27.64 Aligned_cols=74 Identities=12% Similarity=0.150 Sum_probs=43.6
Q ss_pred CcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCccc-------CCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecC
Q 025575 57 TSDIYGPYTNEILVGKALKGGMRERVELATKFGISF-------ADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRV 129 (250)
Q Consensus 57 tA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~~-------~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p 129 (250)
++.-+.. ++..+.+.++.....=+||-||+...- +......-.-+.|++.+.+.|++-|+....+|++-+.
T Consensus 122 ~s~rf~~--ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~ 199 (376)
T PF05049_consen 122 SSERFTE--NDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSF 199 (376)
T ss_dssp ESSS--H--HHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TT
T ss_pred eCCCCch--hhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCC
Confidence 3444543 888889999987667788999986411 0001111224567777888899999999999999887
Q ss_pred CCC
Q 025575 130 DTK 132 (250)
Q Consensus 130 ~~~ 132 (250)
+..
T Consensus 200 dl~ 202 (376)
T PF05049_consen 200 DLS 202 (376)
T ss_dssp TTT
T ss_pred Ccc
Confidence 654
No 234
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=33.28 E-value=1.5e+02 Score=24.91 Aligned_cols=102 Identities=20% Similarity=0.122 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcce----EecCcc--cHHHHHHHhhcCC
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKY----IGLSEA--CAATIRRAHAVHP 172 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~----iGvSn~--~~~~l~~~~~~~~ 172 (250)
+.+++.+..-+.+.-+.-. ..+ +.+..|-.....++.+++|.+|++.=+-+. |=.-.| +.+.+.++.+...
T Consensus 85 ~~d~~~~adYl~~l~~aA~--P~~-L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A 161 (248)
T PF07476_consen 85 DNDPDRMADYLAELEEAAA--PFK-LRIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKA 161 (248)
T ss_dssp TT-HHHHHHHHHHHHHHHT--TS--EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHHHhcC--CCe-eeeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCC
Confidence 3466666666655555543 233 446777555566777777777765433232 333345 6788888888877
Q ss_pred ceEEeeecCcCCcCch--hhhHHHHHHhCCeEEE
Q 025575 173 ITAVQLEWSLWSRDVE--AEIVPTCRELGIGIVA 204 (250)
Q Consensus 173 ~~~~q~~~n~~~~~~~--~~~~~~~~~~gi~via 204 (250)
-+.+|+.--- ..... -+.+-+|+++||+..-
T Consensus 162 ~dmVQIKtPD-LGgi~ntieAvlyCk~~gvgaY~ 194 (248)
T PF07476_consen 162 ADMVQIKTPD-LGGINNTIEAVLYCKEHGVGAYL 194 (248)
T ss_dssp SSEEEE-GGG-GSSTHHHHHHHHHHHHTT-EEEE
T ss_pred cCEEEecCCC-ccchhhHHHHHHHHHhcCCceee
Confidence 8889984221 11111 3788899999998763
No 235
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=33.00 E-value=3.4e+02 Score=23.79 Aligned_cols=122 Identities=14% Similarity=0.053 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHHc-CCCeEeCcCCcCCCChHHHHHHHh---cCC-CCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHH
Q 025575 36 PEPDMIALIHHAINS-GITLLDTSDIYGPYTNEILVGKAL---KGG-MRERVELATKFGISFADGGKIRGDPAYVRACCE 110 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~g~sE~~lg~~l---~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~ 110 (250)
+.++..++++...+. ||+-+--+..-..=.+.+.+.+.+ ++. ..+.+-|.|+.... .+..+...+-
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~---------~p~rit~ell 190 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVA---------DPARVTPALI 190 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCccc---------ChhhcCHHHH
Confidence 446677777766544 887542111000001222233333 332 23345666665322 2333444455
Q ss_pred HHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceE------ecCcccHHHHHHHhh
Q 025575 111 ASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYI------GLSEACAATIRRAHA 169 (250)
Q Consensus 111 ~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~i------GvSn~~~~~l~~~~~ 169 (250)
+.|.+.|.. ..+-+|...+..-.++++++++.|++.|..-.+ |+ |.+.+.+.++.+
T Consensus 191 ~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~ 252 (321)
T TIGR03822 191 AALKTSGKT--VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMR 252 (321)
T ss_pred HHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHH
Confidence 566666632 356778754433357899999999999962211 33 567766666543
No 236
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=32.90 E-value=3.4e+02 Score=24.71 Aligned_cols=102 Identities=15% Similarity=0.068 Sum_probs=55.7
Q ss_pred ChHHHHHHHHHHHHcCCC-eEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCcc---cCCCCCCCCCHHHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSGIT-LLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGIS---FADGGKIRGDPAYVRACCEA 111 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~-~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~---~~~~~~~~~~~~~i~~~l~~ 111 (250)
+-++=.+=+..|.+-|.. ..|-+. .| .-..+.+++-+. ..+=|.|=--+. ...+...+.+.+.+...+++
T Consensus 76 ~i~~EveK~~~A~~~GADtvMDLSt-Gg---dl~eiR~~ii~~--s~vPvGTVPIYqA~~~~~~~~~~~t~d~~~~~v~~ 149 (432)
T COG0422 76 DIDEEVEKAVWAIKWGADTVMDLST-GG---DLHEIREWIIRN--SPVPVGTVPIYQALEEVNGKVEDLTEDDFFDTVEK 149 (432)
T ss_pred CHHHHHHHHHHHHHhCcceeEeccc-CC---CHHHHHHHHHhc--CCCCcCCchHHHHHHHHhcchhhCCHHHHHHHHHH
Confidence 333334456788899975 445443 34 455555555431 111111100000 00001135667777777766
Q ss_pred HHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceE
Q 025575 112 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYI 154 (250)
Q Consensus 112 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~i 154 (250)
..+ +-+|.+-||.- -+++.++.+++.|++-.|
T Consensus 150 qa~----~GVdfmTIHaG-------V~~~~~~~~~~~~R~~gi 181 (432)
T COG0422 150 QAE----QGVDFMTIHAG-------VLLEYVPRTKRSGRVTGI 181 (432)
T ss_pred HHH----hCCcEEEeehh-------hhHHHHHHHHhcCceeee
Confidence 665 45788999963 367889999999987443
No 237
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=32.67 E-value=1.7e+02 Score=23.79 Aligned_cols=95 Identities=8% Similarity=0.020 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhcCCceEEeeecC-cCCc
Q 025575 107 ACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWS-LWSR 185 (250)
Q Consensus 107 ~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n-~~~~ 185 (250)
..+-+.|.. .-..+..+.++. .-+...+|.+.|- ..+-+.-.+.+.|.++++-....+.-+... .-..
T Consensus 12 ~~v~~~L~~---~~~~V~~l~R~~-------~~~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~ 80 (233)
T PF05368_consen 12 RSVVRALLS---AGFSVRALVRDP-------SSDRAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSHPSEL 80 (233)
T ss_dssp HHHHHHHHH---TTGCEEEEESSS-------HHHHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHH
T ss_pred HHHHHHHHh---CCCCcEEEEecc-------chhhhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcchhhhh
Confidence 334444444 345677776653 1223445666666 355555557788888876444333333222 1111
Q ss_pred CchhhhHHHHHHhCCeEEEeccCccCc
Q 025575 186 DVEAEIVPTCRELGIGIVAYGPLGQGF 212 (250)
Q Consensus 186 ~~~~~~~~~~~~~gi~via~spl~~G~ 212 (250)
.....+++.|++.||..+.+|.++...
T Consensus 81 ~~~~~li~Aa~~agVk~~v~ss~~~~~ 107 (233)
T PF05368_consen 81 EQQKNLIDAAKAAGVKHFVPSSFGADY 107 (233)
T ss_dssp HHHHHHHHHHHHHT-SEEEESEESSGT
T ss_pred hhhhhHHHhhhccccceEEEEEecccc
Confidence 122589999999999999999987665
No 238
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.65 E-value=3.6e+02 Score=23.96 Aligned_cols=86 Identities=9% Similarity=0.053 Sum_probs=53.4
Q ss_pred EEeecCCCC-----------CCHHHHHHHHHHHHHcCC---cceEecC--cccHHHHHHHhhc---CCceEEeeecCcCC
Q 025575 124 YYQHRVDTK-----------IPIEVTIGELKKLVEEGK---IKYIGLS--EACAATIRRAHAV---HPITAVQLEWSLWS 184 (250)
Q Consensus 124 ~~lh~p~~~-----------~~~~~~~~~l~~l~~~G~---ir~iGvS--n~~~~~l~~~~~~---~~~~~~q~~~n~~~ 184 (250)
+-||.++++ .+++++++++.++.+.++ ++++=+. |.+.++++++.+. .+..++-++||+..
T Consensus 208 iSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~~ 287 (336)
T PRK14470 208 ISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDAT 287 (336)
T ss_pred EecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCCC
Confidence 457887542 357788899988887654 2333333 3455555555443 45678899999854
Q ss_pred cC----chh---hhHHHH--HHhCCeEEEeccCc
Q 025575 185 RD----VEA---EIVPTC--RELGIGIVAYGPLG 209 (250)
Q Consensus 185 ~~----~~~---~~~~~~--~~~gi~via~spl~ 209 (250)
.. .++ ...+.+ +++|+.+......+
T Consensus 288 ~~~~~p~~~~i~~f~~~l~~~~~g~~~~~R~~~G 321 (336)
T PRK14470 288 GRYRPPDEDEWNAFRDALARELPGTPVVRRYSGG 321 (336)
T ss_pred CCccCCCHHHHHHHHHHHHHccCCeEEEEECCCC
Confidence 32 122 445555 35699998887764
No 239
>PRK15108 biotin synthase; Provisional
Probab=32.55 E-value=3.6e+02 Score=23.94 Aligned_cols=108 Identities=9% Similarity=0.030 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCC-CCCHHHHHHHHHHHHHcCCcceEecCc--ccHHHHHHHhhcCC----
Q 025575 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDT-KIPIEVTIGELKKLVEEGKIKYIGLSE--ACAATIRRAHAVHP---- 172 (250)
Q Consensus 100 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-~~~~~~~~~~l~~l~~~G~ir~iGvSn--~~~~~l~~~~~~~~---- 172 (250)
.+++.|.+.++. ...+|+..+ .....+.++ ...++.+.+.++.+++.|. .+.+|+ .+.+.+.++.+.+-
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i-~i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRF-CMGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEE-EEEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 688888887765 456898887 333333233 2345667777777777664 344554 56777777755411
Q ss_pred --ceEEeeecCcCCc--Cch--hhhHHHHHHhCCeEEEeccCccC
Q 025575 173 --ITAVQLEWSLWSR--DVE--AEIVPTCRELGIGIVAYGPLGQG 211 (250)
Q Consensus 173 --~~~~q~~~n~~~~--~~~--~~~~~~~~~~gi~via~spl~~G 211 (250)
++...--|.-+.. ..+ -+.++.+++.|+.+-+-.-+|-|
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg 196 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG 196 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC
Confidence 1111111111111 111 37888888889866544444433
No 240
>TIGR00035 asp_race aspartate racemase.
Probab=32.35 E-value=2.9e+02 Score=22.75 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCC------------CCHHHHHHHHHHHHHcCCcceEecCcccHHH
Q 025575 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTK------------IPIEVTIGELKKLVEEGKIKYIGLSEACAAT 163 (250)
Q Consensus 101 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~------------~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~ 163 (250)
+.+.+++-++.+-.+.+.++++.+++++|+-. .+...+.+.++.|.+.| +..|-++..+...
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~ 88 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHH
Confidence 45566666667767788899999999998531 12234566666666654 7889888877655
No 241
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=32.34 E-value=1.6e+02 Score=28.31 Aligned_cols=57 Identities=23% Similarity=0.157 Sum_probs=41.4
Q ss_pred CChHHHHHHHhcCC-CCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHc-CCCcccEEEeecCCCCCC
Q 025575 64 YTNEILVGKALKGG-MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRL-DIDCIDLYYQHRVDTKIP 134 (250)
Q Consensus 64 g~sE~~lg~~l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L-~~d~iDl~~lh~p~~~~~ 134 (250)
|-+-+.++++|-.. +|+++.|.--.. .++ +-+..||+|| |+.|+.=+.+-|-.+..+
T Consensus 632 gGsGkEF~~aLGGN~pREQFTvVmLTY-----------ERe---~VLm~sLeRL~gLPYLnKvvVVWNspk~P 690 (907)
T KOG2264|consen 632 GGSGKEFSKALGGNRPREQFTVVMLTY-----------ERE---AVLMGSLERLHGLPYLNKVVVVWNSPKDP 690 (907)
T ss_pred CCchHHHHHHhcCCCccceEEEEEEEe-----------hHH---HHHHHHHHHhhCCcccceEEEEeCCCCCC
Confidence 45888899999876 899988765432 233 4478899999 689998888877655433
No 242
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=32.10 E-value=2.6e+02 Score=23.00 Aligned_cols=51 Identities=12% Similarity=0.036 Sum_probs=30.2
Q ss_pred ChHHHHHHHHHHHHc-----CCCeEeCcCCcCCCChHHHHHHHhcCC-CCCCEEEEeeeC
Q 025575 36 PEPDMIALIHHAINS-----GITLLDTSDIYGPYTNEILVGKALKGG-MRERVELATKFG 89 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~-----Gi~~~DtA~~Yg~g~sE~~lg~~l~~~-~R~~~~i~tK~~ 89 (250)
++++..+.+..|++. |+|---.+.... ++..+...++.. .|.-+||=++..
T Consensus 72 ~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~---~~~~m~~vl~~l~~~gl~FvDS~T~ 128 (213)
T PF04748_consen 72 SEEEIRKRLEAALARVPGAVGVNNHMGSRFTS---DREAMRWVLEVLKERGLFFVDSRTT 128 (213)
T ss_dssp -HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC----HHHHHHHHHHHHHTT-EEEE-S--
T ss_pred CHHHHHHHHHHHHHHCCCcEEEecCCCccccC---CHHHHHHHHHHHHHcCCEEEeCCCC
Confidence 788999999999975 555544444444 677777776665 455666645544
No 243
>PRK05968 hypothetical protein; Provisional
Probab=32.07 E-value=2.5e+02 Score=25.18 Aligned_cols=53 Identities=8% Similarity=-0.037 Sum_probs=34.3
Q ss_pred cHHHHHHHhhcCCceEEeeecCcCCcCc-hhhhHHHHHHhCCeEEEeccCccCc
Q 025575 160 CAATIRRAHAVHPITAVQLEWSLWSRDV-EAEIVPTCRELGIGIVAYGPLGQGF 212 (250)
Q Consensus 160 ~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~via~spl~~G~ 212 (250)
+.+.+++++...++.+++.+.|+..... .+++.+.|+++|+.++.=...+.+.
T Consensus 137 d~~~l~~~i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~ 190 (389)
T PRK05968 137 DEEAVAKALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPV 190 (389)
T ss_pred CHHHHHHhcccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchh
Confidence 5667776664445555666666554422 2578899999999888666555443
No 244
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=31.92 E-value=3.1e+02 Score=23.03 Aligned_cols=96 Identities=18% Similarity=0.142 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC-CcceEecCcccHHHHHHHhhcCCceEEee
Q 025575 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG-KIKYIGLSEACAATIRRAHAVHPITAVQL 178 (250)
Q Consensus 100 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G-~ir~iGvSn~~~~~l~~~~~~~~~~~~q~ 178 (250)
++.+.. ..+-+.|.++|+++|++-+ |.. -+.-++.++.+.+.+ .++..+.+..+.+.++.+.+.. ++.+.+
T Consensus 17 ~~~~~k-~~i~~~L~~~Gv~~iE~g~---p~~---~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g-~~~i~i 88 (259)
T cd07939 17 FSREEK-LAIARALDEAGVDEIEVGI---PAM---GEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCG-VTAVHI 88 (259)
T ss_pred CCHHHH-HHHHHHHHHcCCCEEEEec---CCC---CHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCC-cCEEEE
Confidence 444444 4566669999999988852 321 123356677777643 4667777767788888877652 233333
Q ss_pred ec--CcCC------cCc------hhhhHHHHHHhCCeEE
Q 025575 179 EW--SLWS------RDV------EAEIVPTCRELGIGIV 203 (250)
Q Consensus 179 ~~--n~~~------~~~------~~~~~~~~~~~gi~vi 203 (250)
-+ |..+ ... ..+.++.|+++|+.|.
T Consensus 89 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 89 SIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 22 2111 110 1368889999998765
No 245
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=31.86 E-value=3.1e+02 Score=23.03 Aligned_cols=127 Identities=17% Similarity=0.207 Sum_probs=72.1
Q ss_pred hHHHHHHHhcCC--CCC--CEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC--CCHHHHH
Q 025575 66 NEILVGKALKGG--MRE--RVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK--IPIEVTI 139 (250)
Q Consensus 66 sE~~lg~~l~~~--~R~--~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~--~~~~~~~ 139 (250)
.+.++.++++.. .+. .+.++..+.+. ......+...+.+.+++.+++.- -+.+.-.+.. ...+.+.
T Consensus 68 ~~~v~~~a~~~~~~~~~~~~~~l~iNis~~-------~l~~~~~~~~l~~~l~~~~~~~~-~l~lEitE~~~~~~~~~~~ 139 (256)
T COG2200 68 GRWVLEEACRQLRTWPRAGPLRLAVNLSPV-------QLRSPGLVDLLLRLLARLGLPPH-RLVLEITESALIDDLDTAL 139 (256)
T ss_pred HHHHHHHHHHHHHhhhhcCCceEEEEcCHH-------HhCCchHHHHHHHHHHHhCCCcc-eEEEEEeCchhhcCHHHHH
Confidence 345555555543 122 37777777653 22334555677788888876432 2223222222 2344678
Q ss_pred HHHHHHHHcCCcceEecCcc-----cHHHHHHHhhcCCceEEeeecCcCC--------cCchhhhHHHHHHhCCeEEEec
Q 025575 140 GELKKLVEEGKIKYIGLSEA-----CAATIRRAHAVHPITAVQLEWSLWS--------RDVEAEIVPTCRELGIGIVAYG 206 (250)
Q Consensus 140 ~~l~~l~~~G~ir~iGvSn~-----~~~~l~~~~~~~~~~~~q~~~n~~~--------~~~~~~~~~~~~~~gi~via~s 206 (250)
..+++|++.|- .|.+..| +...+.+ .+++++=+.-+... ......++..|++.|+.|+|-.
T Consensus 140 ~~l~~L~~~G~--~ialDDFGtG~ssl~~L~~----l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEG 213 (256)
T COG2200 140 ALLRQLRELGV--RIALDDFGTGYSSLSYLKR----LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEG 213 (256)
T ss_pred HHHHHHHHCCC--eEEEECCCCCHHHHHHHhh----CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEee
Confidence 89999999992 3444444 3333333 44555544333322 1123579999999999999765
No 246
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.84 E-value=1.9e+02 Score=23.87 Aligned_cols=58 Identities=26% Similarity=0.134 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcCC---cceEecCcc-cHHHHHHHhhcCC-ceEEeeecCcCCcCchhhhHHHHHHhCCeEE
Q 025575 138 TIGELKKLVEEGK---IKYIGLSEA-CAATIRRAHAVHP-ITAVQLEWSLWSRDVEAEIVPTCRELGIGIV 203 (250)
Q Consensus 138 ~~~~l~~l~~~G~---ir~iGvSn~-~~~~l~~~~~~~~-~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi 203 (250)
..+.+++++++-. =-.||..+. +.++++.+++.+- |. .+|.. ..+++++|+++||.++
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi-----vsP~~---~~~v~~~~~~~~i~~i 113 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI-----VSPSF---NRETAKICNLYQIPYL 113 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE-----ECCCC---CHHHHHHHHHcCCCEE
Confidence 4555666655421 135887775 7888888877632 21 23333 3688888888888887
No 247
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=31.79 E-value=3.3e+02 Score=23.33 Aligned_cols=71 Identities=10% Similarity=-0.049 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHHHc------CCCcccEEEeecCCCCC-CHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhc
Q 025575 99 RGDPAYVRACCEASLKRL------DIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 170 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L------~~d~iDl~~lh~p~~~~-~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 170 (250)
..+.+...+-.+-+.+-+ +++.|-|=.+..+..-. +..+++++-+.|.++|-+- +=.++-++-..+++.+.
T Consensus 80 c~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~a~rLed~ 157 (267)
T CHL00162 80 CQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTV-LPYINADPMLAKHLEDI 157 (267)
T ss_pred CCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEE-eecCCCCHHHHHHHHHc
Confidence 445555555555556655 56666665555443333 3568999999999999753 22333344444444443
No 248
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=31.72 E-value=2.7e+02 Score=24.92 Aligned_cols=54 Identities=6% Similarity=-0.051 Sum_probs=33.1
Q ss_pred ccHHHHHHHhhc-CCceEEeeecCcCCcC-chhhhHHHHHHhCCeEEEeccCccCc
Q 025575 159 ACAATIRRAHAV-HPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYGPLGQGF 212 (250)
Q Consensus 159 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~spl~~G~ 212 (250)
.+++.++++++. .+..++..+.|+.-.- ..+++.+.|+++|+.++.=...+.+.
T Consensus 119 ~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~ 174 (378)
T TIGR01329 119 TDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPL 174 (378)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccc
Confidence 356667666542 3344455556654432 12578899999999888666554443
No 249
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=31.71 E-value=3.4e+02 Score=23.46 Aligned_cols=97 Identities=20% Similarity=0.203 Sum_probs=60.3
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHH-----HHHHHHHHHcCCcceEecCcccHH-------HHHHHhhcCCceEEeeec
Q 025575 113 LKRLDIDCIDLYYQHRVDTKIPIEVT-----IGELKKLVEEGKIKYIGLSEACAA-------TIRRAHAVHPITAVQLEW 180 (250)
Q Consensus 113 L~~L~~d~iDl~~lh~p~~~~~~~~~-----~~~l~~l~~~G~ir~iGvSn~~~~-------~l~~~~~~~~~~~~q~~~ 180 (250)
+.-++-.++|++.+..+.......+. -+.+.++.++--=|++|+.+.++. ++++...... ++++..
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~g--f~g~~l 132 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELG--FVGVKL 132 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcC--ceEEEe
Confidence 66777789999988841111112222 256778888888889999887654 3333333333 344444
Q ss_pred CcCCcC------chhhhHHHHHHhCCeEEEeccCccC
Q 025575 181 SLWSRD------VEAEIVPTCRELGIGIVAYGPLGQG 211 (250)
Q Consensus 181 n~~~~~------~~~~~~~~~~~~gi~via~spl~~G 211 (250)
++..+. ....+.++|+++|+.|+-......+
T Consensus 133 ~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~ 169 (293)
T COG2159 133 HPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPG 169 (293)
T ss_pred cccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 444332 1146999999999999986555433
No 250
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=31.66 E-value=3.3e+02 Score=23.35 Aligned_cols=69 Identities=13% Similarity=0.067 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHcCCcceEecCcc-------cHHHHHHHhhcCCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEe
Q 025575 135 IEVTIGELKKLVEEGKIKYIGLSEA-------CAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 205 (250)
Q Consensus 135 ~~~~~~~l~~l~~~G~ir~iGvSn~-------~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~ 205 (250)
++.+++.+++.++++.---|++=.| ..+.+.+.++...++-+-++==|.+. ..++.+.|+++||..|-.
T Consensus 78 ~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee--~~~~~~~~~~~gi~~I~l 153 (265)
T COG0159 78 LEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEE--SDELLKAAEKHGIDPIFL 153 (265)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHH--HHHHHHHHHHcCCcEEEE
Confidence 3556777777776644333333322 22332222222333333332112221 147889999999988843
No 251
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=31.51 E-value=1.6e+02 Score=26.33 Aligned_cols=114 Identities=14% Similarity=-0.006 Sum_probs=58.0
Q ss_pred CCCCEEEEeeeCcccCCC------CCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHH-cCC
Q 025575 78 MRERVELATKFGISFADG------GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVE-EGK 150 (250)
Q Consensus 78 ~R~~~~i~tK~~~~~~~~------~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~-~G~ 150 (250)
+|+++-+++++...+.+. .-...=.......+...|.+.|. ++.+|..- ++++..+..+.... .+.
T Consensus 24 sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv~~~~mA~~la~~g~----~~~iHk~~---~~e~~~~~v~~~~~~~~~ 96 (343)
T TIGR01305 24 SRADVELERTFTFRNSKQTYSGVPIIAANMDTVGTFEMAAALSQHSI----FTAIHKHY---SVDEWKAFATNSSPDCLQ 96 (343)
T ss_pred cHHHceeeEEEccccCCceeeCCceEecCCCcccCHHHHHHHHHCCC----eEEEeeCC---CHHHHHHHHHhhcccccc
Confidence 688899999887432211 00011122344556777777763 56678742 23333333333222 122
Q ss_pred --cceEecCcccHHHHHHHhhcC-CceEEeeecCcCCcCchhhhHHHHHHh
Q 025575 151 --IKYIGLSEACAATIRRAHAVH-PITAVQLEWSLWSRDVEAEIVPTCREL 198 (250)
Q Consensus 151 --ir~iGvSn~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~~~~~~~~~~~ 198 (250)
.-++|++..+.+.+.++++.. .++++.+...-.+....-+.+++.++.
T Consensus 97 ~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~ 147 (343)
T TIGR01305 97 NVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREA 147 (343)
T ss_pred eEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhh
Confidence 126677777777777777653 455555544333322223445555543
No 252
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=31.20 E-value=2e+02 Score=23.71 Aligned_cols=97 Identities=18% Similarity=0.121 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHHHH-cCCCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHH
Q 025575 36 PEPDMIALIHHAIN-SGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (250)
Q Consensus 36 ~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~ 114 (250)
+.+++..+.+...+ .|+-|...++=|= +-+...+..+..+. .++++-. .+.+.+.+ .+.++
T Consensus 11 ~~eda~~a~~~gad~iG~If~~~SpR~V---s~~~a~~i~~~v~~-----~~~VgVf------~n~~~~~i----~~i~~ 72 (208)
T COG0135 11 RLEDAKAAAKAGADYIGFIFVPKSPRYV---SPEQAREIASAVPK-----VKVVGVF------VNESIEEI----LEIAE 72 (208)
T ss_pred CHHHHHHHHHcCCCEEEEEEcCCCCCcC---CHHHHHHHHHhCCC-----CCEEEEE------CCCCHHHH----HHHHH
Confidence 34444444444222 3555666677665 45555555555332 1133322 13345444 34444
Q ss_pred HcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHc---CCcceEecCccc
Q 025575 115 RLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE---GKIKYIGLSEAC 160 (250)
Q Consensus 115 ~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~---G~ir~iGvSn~~ 160 (250)
.+ .+|++|||...+ .+..+++++. .-++.|.++.-.
T Consensus 73 ~~---~ld~VQlHG~e~-------~~~~~~l~~~~~~~v~kai~v~~~~ 111 (208)
T COG0135 73 EL---GLDAVQLHGDED-------PEYIDQLKEELGVPVIKAISVSEEG 111 (208)
T ss_pred hc---CCCEEEECCCCC-------HHHHHHHHhhcCCceEEEEEeCCcc
Confidence 45 479999998743 3344455554 567888887643
No 253
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=31.17 E-value=2.1e+02 Score=20.85 Aligned_cols=54 Identities=20% Similarity=0.233 Sum_probs=30.9
Q ss_pred CcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhcCCceEEeeecCcCCcCchhhhHHHHHHh
Q 025575 119 DCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCREL 198 (250)
Q Consensus 119 d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~ 198 (250)
+.+|+..+--| .+.+.+.++++.+.| ++.+ ++|.. ...+++++.|+++
T Consensus 54 ~~iDlavv~~~-----~~~~~~~v~~~~~~g-~~~v--------------------~~~~g------~~~~~~~~~a~~~ 101 (116)
T PF13380_consen 54 EPIDLAVVCVP-----PDKVPEIVDEAAALG-VKAV--------------------WLQPG------AESEELIEAAREA 101 (116)
T ss_dssp ST-SEEEE-S------HHHHHHHHHHHHHHT--SEE--------------------EE-TT------S--HHHHHHHHHT
T ss_pred CCCCEEEEEcC-----HHHHHHHHHHHHHcC-CCEE--------------------EEEcc------hHHHHHHHHHHHc
Confidence 56777766644 456677777777776 3222 11211 2236899999999
Q ss_pred CCeEEE
Q 025575 199 GIGIVA 204 (250)
Q Consensus 199 gi~via 204 (250)
|+.++.
T Consensus 102 gi~vig 107 (116)
T PF13380_consen 102 GIRVIG 107 (116)
T ss_dssp T-EEEE
T ss_pred CCEEEe
Confidence 999985
No 254
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=31.03 E-value=1.3e+02 Score=24.80 Aligned_cols=76 Identities=24% Similarity=0.208 Sum_probs=43.6
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhcCCceEEeeecCcCCcC--------chhhhHHHH
Q 025575 124 YYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD--------VEAEIVPTC 195 (250)
Q Consensus 124 ~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~--------~~~~~~~~~ 195 (250)
.-+|-...+.+..+. .++...++ -||+|+++.+++.++.+.. ++++ -+.++.+. ..-+.+.+.
T Consensus 83 dGVHlGq~D~~~~~a----r~~~~~~~--iIG~S~h~~eea~~A~~~g-~DYv--~~GpifpT~tK~~~~~~G~~~l~~~ 153 (211)
T COG0352 83 DGVHLGQDDMPLAEA----RELLGPGL--IIGLSTHDLEEALEAEELG-ADYV--GLGPIFPTSTKPDAPPLGLEGLREI 153 (211)
T ss_pred CEEEcCCcccchHHH----HHhcCCCC--EEEeecCCHHHHHHHHhcC-CCEE--EECCcCCCCCCCCCCccCHHHHHHH
Confidence 346766555544332 33444444 5999999999999987664 3332 23333332 113556666
Q ss_pred HHhC-CeEEEeccC
Q 025575 196 RELG-IGIVAYGPL 208 (250)
Q Consensus 196 ~~~g-i~via~spl 208 (250)
++.. +++++.+-+
T Consensus 154 ~~~~~iP~vAIGGi 167 (211)
T COG0352 154 RELVNIPVVAIGGI 167 (211)
T ss_pred HHhCCCCEEEEcCC
Confidence 6665 888876543
No 255
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=30.95 E-value=3e+02 Score=25.77 Aligned_cols=15 Identities=7% Similarity=0.317 Sum_probs=10.2
Q ss_pred HHHHHHHcCCCcccE
Q 025575 109 CEASLKRLDIDCIDL 123 (250)
Q Consensus 109 l~~sL~~L~~d~iDl 123 (250)
+-+.|.++|++.|.+
T Consensus 30 Ia~~Ld~~Gv~~IE~ 44 (467)
T PRK14041 30 ALEAFDRMGFYSMEV 44 (467)
T ss_pred HHHHHHHcCCCEEEe
Confidence 445577778777777
No 256
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=30.92 E-value=3.3e+02 Score=26.94 Aligned_cols=144 Identities=15% Similarity=0.096 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcC
Q 025575 38 PDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD 117 (250)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~ 117 (250)
+-+..++++|-+.|++.+- .| ||+--...=+. +-++-|++.|..+.. ...-.+++..+--+
T Consensus 43 EIaIRvFRa~tEL~~~tvA---iY----seqD~~sMHRq-KADEaY~iGk~l~PV-----------~AYL~ideii~iak 103 (1176)
T KOG0369|consen 43 EIAIRVFRAATELSMRTVA---IY----SEQDRLSMHRQ-KADEAYLIGKGLPPV-----------GAYLAIDEIISIAK 103 (1176)
T ss_pred cchhHHHHHHhhhcceEEE---EE----eccchhhhhhh-ccccceecccCCCch-----------hhhhhHHHHHHHHH
Confidence 4468899999999998775 67 44433333222 668889999974331 11122233222222
Q ss_pred CCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHH----------hhcCCceEEeeecCcCCcCc
Q 025575 118 IDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRA----------HAVHPITAVQLEWSLWSRDV 187 (250)
Q Consensus 118 ~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~----------~~~~~~~~~q~~~n~~~~~~ 187 (250)
-.-+|.+ | |.... +.|--+.-....+.| |+.||=|. +.+..+ ++..-+ ++--.=.|+..
T Consensus 104 ~~~vdav--H-PGYGF-LSErsdFA~av~~AG-i~fiGPsp---eVi~~mGDKv~AR~~Ai~agVp-vVPGTpgPitt-- 172 (1176)
T KOG0369|consen 104 KHNVDAV--H-PGYGF-LSERSDFAQAVQDAG-IRFIGPSP---EVIDSMGDKVAARAIAIEAGVP-VVPGTPGPITT-- 172 (1176)
T ss_pred HcCCCee--c-CCccc-cccchHHHHHHHhcC-ceEeCCCH---HHHHHhhhHHHHHHHHHHcCCC-ccCCCCCCccc--
Confidence 2334543 4 33221 222233333444444 78999874 333222 122211 11111112221
Q ss_pred hhhhHHHHHHhCCeEEEeccCccC
Q 025575 188 EAEIVPTCRELGIGIVAYGPLGQG 211 (250)
Q Consensus 188 ~~~~~~~~~~~gi~via~spl~~G 211 (250)
.++.++||+++|.+||--...++|
T Consensus 173 ~~EA~eF~k~yG~PvI~KAAyGGG 196 (1176)
T KOG0369|consen 173 VEEALEFVKEYGLPVIIKAAYGGG 196 (1176)
T ss_pred HHHHHHHHHhcCCcEEEeecccCC
Confidence 268999999999999998888877
No 257
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=30.86 E-value=3.3e+02 Score=23.09 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=20.0
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcC
Q 025575 36 PEPDMIALIHHAINSGITLLDTSD 59 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~ 59 (250)
+.++..++.+..-+.||..|+...
T Consensus 18 ~~~~~~~ia~~L~~~GVd~IEvG~ 41 (266)
T cd07944 18 GDEFVKAIYRALAAAGIDYVEIGY 41 (266)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeec
Confidence 567788888888899999999874
No 258
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=30.85 E-value=1.9e+02 Score=24.82 Aligned_cols=38 Identities=18% Similarity=0.075 Sum_probs=19.9
Q ss_pred HHHHHHHHcCCcceEecCcccHHHHHHHhhcCCceEEee
Q 025575 140 GELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQL 178 (250)
Q Consensus 140 ~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~ 178 (250)
++++++++...-+.|||+.++.+++.++.+.. .+++++
T Consensus 172 ~av~~~R~~~~~~~IgVev~t~eea~~A~~~g-aD~I~l 209 (272)
T cd01573 172 KALARLRATAPEKKIVVEVDSLEEALAAAEAG-ADILQL 209 (272)
T ss_pred HHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcC-CCEEEE
Confidence 44444444322235677777777766665432 345544
No 259
>PRK09358 adenosine deaminase; Provisional
Probab=30.63 E-value=3.7e+02 Score=23.49 Aligned_cols=105 Identities=11% Similarity=-0.017 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcc-cHHHHHHHhhcCCceEEeeec
Q 025575 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEA-CAATIRRAHAVHPITAVQLEW 180 (250)
Q Consensus 102 ~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~q~~~ 180 (250)
++...+.+++.++...-+.+-=+=++.+....+.+.....++.+++.|.--.+=++.. +.+.+..+++...++.+---+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~lg~~ri~Hg~ 227 (340)
T PRK09358 148 EEAAARELEALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDELGAERIGHGV 227 (340)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHcCCcccchhh
Confidence 4555556666665422122211123334333455667788888888886555544433 234455555421222211111
Q ss_pred CcCCcCchhhhHHHHHHhCCeEEEeccCcc
Q 025575 181 SLWSRDVEAEIVPTCRELGIGIVAYGPLGQ 210 (250)
Q Consensus 181 n~~~~~~~~~~~~~~~~~gi~via~spl~~ 210 (250)
++ ...+++++..+++||.+. ..|...
T Consensus 228 ~l---~~~~~~~~~l~~~gi~v~-~cP~Sn 253 (340)
T PRK09358 228 RA---IEDPALMARLADRRIPLE-VCPTSN 253 (340)
T ss_pred hh---ccCHHHHHHHHHcCCeEE-ECCCcc
Confidence 11 112478999999998876 345544
No 260
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=30.54 E-value=3.5e+02 Score=23.18 Aligned_cols=157 Identities=13% Similarity=0.152 Sum_probs=0.0
Q ss_pred CCCCcccCceeecccccCCCCCCCCChHHHHHHHHHHH--HcCCCeEe----CcCCcCCCChHHHHHHHhcCCCCCCEEE
Q 025575 11 GSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAI--NSGITLLD----TSDIYGPYTNEILVGKALKGGMRERVEL 84 (250)
Q Consensus 11 g~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~--~~Gi~~~D----tA~~Yg~g~sE~~lg~~l~~~~R~~~~i 84 (250)
|..|+-||.+- +.++++++++.+. -.|.|-+. -+..|| . ..+++.. ..+++++
T Consensus 90 GA~GIivP~V~--------------saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg---~---~~~y~~~-an~~~~v 148 (267)
T PRK10128 90 GAQTLLIPMVD--------------TAEQARQVVSATRYPPYGERGVGASVARAARWG---R---IENYMAQ-ANDSLCL 148 (267)
T ss_pred CCCeeEecCcC--------------CHHHHHHHHHhcCCCCCCCCCCCCccchhhccC---C---hHHHHHH-hccccEE
Q ss_pred EeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEee--------cCCCCCCHHHHHHHHHH----HHHcCCcc
Q 025575 85 ATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQH--------RVDTKIPIEVTIGELKK----LVEEGKIK 152 (250)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh--------~p~~~~~~~~~~~~l~~----l~~~G~ir 152 (250)
.--+-.. +.+++.=+-+.++.||.+++- .......-.++.+++++ +++.||
T Consensus 149 i~qiEt~---------------~a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk-- 211 (267)
T PRK10128 149 LVQVESK---------------TALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGK-- 211 (267)
T ss_pred EEEECCH---------------HHHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCC--
Q ss_pred eEecCcccHHHHHHHhhc-CCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEeccCccC
Q 025575 153 YIGLSEACAATIRRAHAV-HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQG 211 (250)
Q Consensus 153 ~iGvSn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G 211 (250)
.+|+...+++...++++. ..+.++..+..++.+.. ...+...++ ....|-+.|
T Consensus 212 ~~G~~~~~~~~a~~~~~~G~~~v~~g~D~~~l~~~~-~~~~~~~~~-----~~~~~~~~~ 265 (267)
T PRK10128 212 AAGFLAVDPDMAQKCLAWGANFVAVGVDTMLYTDAL-DQRLAMFKS-----GKNGPRAKG 265 (267)
T ss_pred eEEEcCCCHHHHHHHHHcCCcEEEEChHHHHHHHHH-HHHHHHHhc-----cccCccccc
No 261
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=30.50 E-value=3.4e+02 Score=23.07 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHc--CCcceEecCccc
Q 025575 135 IEVTIGELKKLVEE--GKIKYIGLSEAC 160 (250)
Q Consensus 135 ~~~~~~~l~~l~~~--G~ir~iGvSn~~ 160 (250)
..++++.++.+++. |.=-.+|+||-+
T Consensus 173 ~~~~l~~i~~l~~~~pg~p~l~G~Sn~S 200 (261)
T PRK07535 173 GPEVLETIRRIKELYPKVHTTCGLSNIS 200 (261)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCc
Confidence 34678888888888 887889999865
No 262
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=30.41 E-value=2.4e+02 Score=26.94 Aligned_cols=73 Identities=22% Similarity=0.151 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhcCCceEE---eeecCcCCcCchhhhHHHHHHhCCeEEEeccC
Q 025575 133 IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAV---QLEWSLWSRDVEAEIVPTCRELGIGIVAYGPL 208 (250)
Q Consensus 133 ~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~---q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 208 (250)
.+.+++.+.+.+.++..+|+.||+-.+...++..+++...+.++ |.-.++-.+ ..-++..-.+|.-+..-.|+
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~---~k~~e~~~~~g~i~~~dnp~ 485 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGA---IKTIERKLAEGVLVHGDNPL 485 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCch---hHHHHHHHhcCcEEECCCcH
Confidence 45678899999999999999999999999998888876444332 332222221 24455555555555555554
No 263
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=30.32 E-value=3e+02 Score=25.20 Aligned_cols=61 Identities=8% Similarity=-0.054 Sum_probs=35.5
Q ss_pred cceEecCcccHHHHHHHhhc-CCceEEeeecCcCCcC-chhhhHHHHHHhCCeEEEeccCccC
Q 025575 151 IKYIGLSEACAATIRRAHAV-HPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYGPLGQG 211 (250)
Q Consensus 151 ir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~spl~~G 211 (250)
++-+-+...+++.+++++.. .+..++..+-||.-.. ...++.++|+++|+.++.=..++.+
T Consensus 129 v~v~~vd~~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~ 191 (431)
T PRK08248 129 ITVKFVDPSDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASP 191 (431)
T ss_pred EEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCcc
Confidence 33333333467777776643 3344444445553322 2258899999999988865555433
No 264
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=30.19 E-value=1.4e+02 Score=24.70 Aligned_cols=32 Identities=13% Similarity=0.289 Sum_probs=25.7
Q ss_pred eEEeeecCcCCcCchhhhHHHHHHhCCeEEEe
Q 025575 174 TAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 205 (250)
Q Consensus 174 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~ 205 (250)
.+.=-+||++++....++.+..++.|+.|+..
T Consensus 187 vl~GrpY~~~D~~in~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 187 VLLGRPYNIYDPFINMGIPDKLRSLGVPVITE 218 (221)
T ss_pred EEEcCCCcCCCcccCCchHHHHHHCCCeeeCc
Confidence 33344899988877779999999999999864
No 265
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=30.04 E-value=4e+02 Score=23.77 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCC-cceEecCcccHHHHHHHhhcCCceEEe
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGK-IKYIGLSEACAATIRRAHAVHPITAVQ 177 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~q 177 (250)
.++.+.. ..+-+.|.++|+++|.+- +|... +.-++.++.+.+.+. .+..+++....+.++.+.+.. ++.+.
T Consensus 19 ~~s~~~k-~~ia~~L~~~Gv~~IEvG---~p~~~---~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g-~~~i~ 90 (365)
T TIGR02660 19 AFTAAEK-LAIARALDEAGVDELEVG---IPAMG---EEERAVIRAIVALGLPARLMAWCRARDADIEAAARCG-VDAVH 90 (365)
T ss_pred CCCHHHH-HHHHHHHHHcCCCEEEEe---CCCCC---HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCC-cCEEE
Confidence 3445444 446666999999888874 34321 233666777776643 666777777788888877653 23333
Q ss_pred eecCcC--C------cCch------hhhHHHHHHhCCeEE
Q 025575 178 LEWSLW--S------RDVE------AEIVPTCRELGIGIV 203 (250)
Q Consensus 178 ~~~n~~--~------~~~~------~~~~~~~~~~gi~vi 203 (250)
+-...- + ...+ .+.+++++++|..|.
T Consensus 91 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 91 ISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 322211 1 1111 368889999998765
No 266
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.82 E-value=2.2e+02 Score=23.42 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=35.7
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeC
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFG 89 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~ 89 (250)
+.+++.++.+..++.|++.++-.-.... ..+.+...-+..++--+-.-|++.
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iEitl~~~~--~~~~I~~l~~~~p~~~IGAGTVl~ 76 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVTLRTPA--ALEAIRLIAKEVPEALIGAGTVLN 76 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCcc--HHHHHHHHHHHCCCCEEEEeeccC
Confidence 6789999999999999999998754433 566665554444543344555554
No 267
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=29.82 E-value=4.3e+02 Score=24.05 Aligned_cols=109 Identities=12% Similarity=0.036 Sum_probs=55.6
Q ss_pred cCCcCCCChHHHHHHHhcCC----CCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcC-CCcccEEEeecCCCC
Q 025575 58 SDIYGPYTNEILVGKALKGG----MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD-IDCIDLYYQHRVDTK 132 (250)
Q Consensus 58 A~~Yg~g~sE~~lg~~l~~~----~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~-~d~iDl~~lh~p~~~ 132 (250)
.-.|| .|+.+-+++++. +.+-++|.|-..+. .--+.++.-+++.-++.. -.-+.++.++.|...
T Consensus 60 d~V~G---g~~~L~~~i~~~~~~~~p~~I~v~~tC~~~--------liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~ 128 (428)
T cd01965 60 AAVFG---GEDNLIEALKNLLSRYKPDVIGVLTTCLTE--------TIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFK 128 (428)
T ss_pred CeeEC---cHHHHHHHHHHHHHhcCCCEEEEECCcchh--------hcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCC
Confidence 34566 467777777764 33445665554322 122233333333322210 013567778887655
Q ss_pred CCH----HHHHHHHHHH-------HHcCCcceEecCcc---cHHHHHHHhhcCCceEEe
Q 025575 133 IPI----EVTIGELKKL-------VEEGKIKYIGLSEA---CAATIRRAHAVHPITAVQ 177 (250)
Q Consensus 133 ~~~----~~~~~~l~~l-------~~~G~ir~iGvSn~---~~~~l~~~~~~~~~~~~q 177 (250)
... +.++++|-+. ++.++|.-||-++. +.+++.++++...+.++.
T Consensus 129 g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 129 GSHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPII 187 (428)
T ss_pred CcHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 322 2233333322 23456777876654 357788877765454444
No 268
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=29.71 E-value=30 Score=33.88 Aligned_cols=78 Identities=15% Similarity=0.073 Sum_probs=49.5
Q ss_pred HHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhcCCceEEeeecCcCCcCch
Q 025575 109 CEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVE 188 (250)
Q Consensus 109 l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~ 188 (250)
+=.-|+.||+.+|-|+=+|....... +.+.|+.-+||-.....-.++... .-.+. |..+-.|
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~----------l~~~gl~n~WGYdP~~fFAp~~~Y-------ss~p~-p~~~i~E 266 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPH----------LDKSGLNNNWGYDPLNFFAPEGRY-------ASNPE-PATRIKE 266 (697)
T ss_pred HHHHHHHhCCceEEEecceEEecccc----------ccccccccccCCCcccccCCCccc-------cCCCC-cchHHHH
Confidence 35678899999999998876544332 227888888887654422221111 11111 2333222
Q ss_pred -hhhHHHHHHhCCeEEE
Q 025575 189 -AEIVPTCRELGIGIVA 204 (250)
Q Consensus 189 -~~~~~~~~~~gi~via 204 (250)
+.++..++++||.||-
T Consensus 267 fK~mV~~lHkaGI~VIL 283 (697)
T COG1523 267 FKDMVKALHKAGIEVIL 283 (697)
T ss_pred HHHHHHHHHHcCCEEEE
Confidence 6899999999999994
No 269
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=29.26 E-value=2.5e+02 Score=23.87 Aligned_cols=99 Identities=15% Similarity=0.136 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCC-cceEecCcccHHHHHHHhhcCCceEEee
Q 025575 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGK-IKYIGLSEACAATIRRAHAVHPITAVQL 178 (250)
Q Consensus 100 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~q~ 178 (250)
++.+... .+-+.|.++|++.|.+-. |.. ..+.++..+.+.+.++ .+-.+....+.+.++.+.+... +.+-+
T Consensus 19 ~s~~~k~-~i~~~L~~~Gv~~IEvG~---P~~---~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~-~~i~i 90 (262)
T cd07948 19 FDTEDKI-EIAKALDAFGVDYIELTS---PAA---SPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGV-DGVDL 90 (262)
T ss_pred CCHHHHH-HHHHHHHHcCCCEEEEEC---CCC---CHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCc-CEEEE
Confidence 4444444 455558899987777653 433 2344555555555444 3334555667778888877632 23322
Q ss_pred ec--Cc------CCcCch------hhhHHHHHHhCCeEEEec
Q 025575 179 EW--SL------WSRDVE------AEIVPTCRELGIGIVAYG 206 (250)
Q Consensus 179 ~~--n~------~~~~~~------~~~~~~~~~~gi~via~s 206 (250)
-+ |. +....+ .+++++++++|+.|...-
T Consensus 91 ~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 91 VFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 22 11 111111 356788888898766543
No 270
>PF09639 YjcQ: YjcQ protein; InterPro: IPR018597 YjcQ is a protein of approx. 100 residues containing four alpha helices and three beta strands. It is found in bacteria and also in the Lactococcus phage Tuc2009. In bacteria it appears to be under the regulation of SigD RNA polymerase which is responsible for the expression of many genes encoding cell-surface proteins related to flagellar assembly, motility, chemotaxis and autolysis in the late exponential growth phase. The exact function of YjcQ is unknown []. However, it is thought to be the major head protein in viruses [] and is found in prophage in bacteria. ; PDB: 2HGC_A.
Probab=29.14 E-value=81 Score=21.96 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCcceEecCcc
Q 025575 136 EVTIGELKKLVEEGKIKYIGLSEA 159 (250)
Q Consensus 136 ~~~~~~l~~l~~~G~ir~iGvSn~ 159 (250)
....+.|+.|+++|.|..+-+.+.
T Consensus 25 ~~~~~il~~L~d~GyI~G~~~~~~ 48 (88)
T PF09639_consen 25 SYWSDILRMLQDEGYIKGVSVVRY 48 (88)
T ss_dssp HHHHHHHHHHHHHTSEE--EESSS
T ss_pred HHHHHHHHHHHHCCCccceEEEec
Confidence 567799999999999987777665
No 271
>PLN02681 proline dehydrogenase
Probab=29.14 E-value=4.8e+02 Score=24.31 Aligned_cols=162 Identities=15% Similarity=0.047 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCCC-eEeCcCCcCCCChHHHHHHHhcCCC----CCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHH
Q 025575 39 DMIALIHHAINSGIT-LLDTSDIYGPYTNEILVGKALKGGM----RERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (250)
Q Consensus 39 ~~~~~l~~A~~~Gi~-~~DtA~~Yg~g~sE~~lg~~l~~~~----R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL 113 (250)
...++++.|.+.|++ .||.=+.|=...-..+.-+..+... +.-|+++-.... .-+++.+...++.+.
T Consensus 221 rl~~i~~~A~~~gv~l~IDAE~s~~q~aid~l~~~l~~~yN~~~~~~~V~~T~QaYL--------k~t~~~l~~~l~~a~ 292 (455)
T PLN02681 221 RLQKLCERAAQLGVPLLIDAEYTSLQPAIDYITYDLAREFNKGKDRPIVYGTYQAYL--------KDARERLRLDLERSE 292 (455)
T ss_pred HHHHHHHHHHHCCCEEEEeCCcccchhHHHHHHHHHHHHhccccCCCcEEEEEeCcc--------ccCHHHHHHHHHHHH
Confidence 356788999999998 6786554432222333333444333 344555555443 235677777666654
Q ss_pred HH---cCC-----CcccE-----EEeecCCCCC-CHHHH----HHHHHHHHH---cCCcceEecCcccHHHHHHHhhc--
Q 025575 114 KR---LDI-----DCIDL-----YYQHRVDTKI-PIEVT----IGELKKLVE---EGKIKYIGLSEACAATIRRAHAV-- 170 (250)
Q Consensus 114 ~~---L~~-----d~iDl-----~~lh~p~~~~-~~~~~----~~~l~~l~~---~G~ir~iGvSn~~~~~l~~~~~~-- 170 (250)
+. +|+ -|.|- -...||++-. ..+++ ...++.+.+ .+. -++.|.+|+.+-+..+.+.
T Consensus 293 ~~g~~~gvKLVRGAY~e~E~~~a~~~g~~~pi~~~k~~Td~~Y~~~~~~lL~~~~~~~-~~~~vATHN~~Si~~a~~~~~ 371 (455)
T PLN02681 293 REGVPLGAKLVRGAYLSLERRLAASLGVPSPVHDTIQDTHACYNRCAEFLLEKASNGD-GEVMLATHNVESGELAAAKMN 371 (455)
T ss_pred hcCCCcceEEEecCCcchhhhhHHhcCCCCCCcCCHHHHHHHHHHHHHHHhhhhccCC-eeeEEecCCHHHHHHHHHHHH
Confidence 42 121 22221 1122332221 12222 233334443 244 4788999998876665443
Q ss_pred ---CCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEeccCcc
Q 025575 171 ---HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQ 210 (250)
Q Consensus 171 ---~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~ 210 (250)
.+..-..++|-.+..-. +.+-....+.|..|.-|-|.|.
T Consensus 372 ~~gi~~~~~~veF~qL~GM~-d~ls~~L~~~G~~V~kYvPyG~ 413 (455)
T PLN02681 372 ELGLHKGDPRVQFAQLLGMS-DNLSFGLGNAGFRVSKYLPYGP 413 (455)
T ss_pred HcCCCCCCCCEEEeccCCCC-HHHHHHHHhcCCCEEEEeeccC
Confidence 11111233444444332 4666677788999999999863
No 272
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=29.12 E-value=78 Score=30.10 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=17.9
Q ss_pred hhhHHHHHHhCCeEEEeccCc
Q 025575 189 AEIVPTCRELGIGIVAYGPLG 209 (250)
Q Consensus 189 ~~~~~~~~~~gi~via~spl~ 209 (250)
.++++.|+++||.||-=.++.
T Consensus 163 k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 163 KALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred HHHHHHHHHCCCEEEEEEccC
Confidence 689999999999999765554
No 273
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.93 E-value=1.8e+02 Score=24.35 Aligned_cols=112 Identities=12% Similarity=0.010 Sum_probs=68.9
Q ss_pred HHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCC-----CCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHH
Q 025575 40 MIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGG-----MRERVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (250)
Q Consensus 40 ~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~-----~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~ 114 (250)
+..++.-+++.|.+..= +. +|..+.+++++. +-.+.++.-++...+..-......++..+.-++..++
T Consensus 45 sqr~~YG~L~~g~~v~y----vs---Te~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~ 117 (235)
T COG2874 45 SQRFAYGFLMNGYRVTY----VS---TELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLE 117 (235)
T ss_pred HHHHHHHHHhCCceEEE----EE---echhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccChHHHHHHHHHHHh
Confidence 45677778899988653 22 777788888764 2233333333322110000124456667777777777
Q ss_pred HcCCCcccEEEeecCCCCC------CHHHHHHHHHHHHHcCCcceEecCc
Q 025575 115 RLDIDCIDLYYQHRVDTKI------PIEVTIGELKKLVEEGKIKYIGLSE 158 (250)
Q Consensus 115 ~L~~d~iDl~~lh~p~~~~------~~~~~~~~l~~l~~~G~ir~iGvSn 158 (250)
....-.-|++++...+.-. .+.+.+..+..+.++||+--+-+..
T Consensus 118 ~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp 167 (235)
T COG2874 118 FIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHP 167 (235)
T ss_pred hHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeCh
Confidence 7777778999999875421 2345666777777899987666654
No 274
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=28.73 E-value=1.1e+02 Score=23.03 Aligned_cols=50 Identities=8% Similarity=0.075 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCCCC-CHHHHHHHHHHHHHcCCcceEec
Q 025575 107 ACCEASLKRLDIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKIKYIGL 156 (250)
Q Consensus 107 ~~l~~sL~~L~~d~iDl~~lh~p~~~~-~~~~~~~~l~~l~~~G~ir~iGv 156 (250)
..+.+.|+.+....+|+++++..+.-. ...++...++.|.+.-.|+-+-+
T Consensus 55 p~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~~gv~l~~~ 105 (140)
T cd03770 55 PGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPKKGVRFIAI 105 (140)
T ss_pred HHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhhcCcEEEEe
Confidence 455666666666789999999887654 34566777777777633444433
No 275
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=28.69 E-value=5e+02 Score=24.44 Aligned_cols=131 Identities=10% Similarity=0.075 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcCCCChH---HHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNE---ILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEAS 112 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE---~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~s 112 (250)
+.-+...+....-+.|+ -|-...|. |..| .++.+++.+.....-.|.........+...+.+.-..+.++++.-
T Consensus 210 ~~~e~~~L~~~~~~~~l--~~rv~i~p-GADEvg~~LlaRa~n~~~~~~P~v~v~Ys~~~g~~~vp~YEd~pl~esv~~h 286 (497)
T PF13552_consen 210 TAMEQRELEAYIEELGL--SDRVMIYP-GADEVGLLLLARAYNEYKGYKPRVYVRYSSGNGADTVPPYEDRPLGESVKEH 286 (497)
T ss_pred CHHHHHHHHHHHHhcCC--CCceeeeC-ChhHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCccCCCCCCCCHHHHHHHH
Confidence 34456666666667775 34455553 3333 556677665422222222222211111223344556788899999
Q ss_pred HHHcCCCc------ccE-EEeecCCCCC---------------CHHHHHHHHHHHHHcCCcceE---ecCcccHHHHHHH
Q 025575 113 LKRLDIDC------IDL-YYQHRVDTKI---------------PIEVTIGELKKLVEEGKIKYI---GLSEACAATIRRA 167 (250)
Q Consensus 113 L~~L~~d~------iDl-~~lh~p~~~~---------------~~~~~~~~l~~l~~~G~ir~i---GvSn~~~~~l~~~ 167 (250)
+...|..- -|+ +.+|.|.... ...+..+.++++.++|+.-.| ..+|-.-..+.+.
T Consensus 287 I~aaGg~~~~~~~~AD~vL~Vntp~~~~~~~~~~~~~~~~~~~~~~~f~~~I~~~l~~G~~VaiaDva~~NGad~~L~~~ 366 (497)
T PF13552_consen 287 IRAAGGVLVDSPEEADLVLAVNTPGDGMTEESEQFANDDTPYRNLREFVDRIEEYLAKGKPVAIADVAYANGADNALMEL 366 (497)
T ss_pred HHhcCCEEcCCCCCCCEEEEEecCCCccccccccccccccccccHHHHHHHHHHHHHcCCcEEEEEcCcCCCccHHHHHH
Confidence 99998644 444 5678874432 346788899999999986553 3445444454444
Q ss_pred hh
Q 025575 168 HA 169 (250)
Q Consensus 168 ~~ 169 (250)
+.
T Consensus 367 L~ 368 (497)
T PF13552_consen 367 LL 368 (497)
T ss_pred HH
Confidence 43
No 276
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=28.64 E-value=1.6e+02 Score=26.99 Aligned_cols=57 Identities=21% Similarity=0.362 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceE--------------ecCcccHHHHHHHhhc
Q 025575 108 CCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYI--------------GLSEACAATIRRAHAV 170 (250)
Q Consensus 108 ~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~i--------------GvSn~~~~~l~~~~~~ 170 (250)
++++..+.|.-.-.+++.+|.-... =++||+|.++|.+..+ |+..-.+++++.+.+.
T Consensus 199 ~V~~~~~~Le~~G~Ev~VFHAtG~G------G~aME~Li~~G~~~~VlDlTttEl~d~l~GGv~sagp~Rl~AA~~~ 269 (403)
T PF06792_consen 199 CVDAIRERLEEEGYEVLVFHATGTG------GRAMERLIREGQFDGVLDLTTTELADELFGGVLSAGPDRLEAAARA 269 (403)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCCCc------hHHHHHHHHcCCcEEEEECcHHHHHHHHhCCCCCCCchHHHHHHHc
Confidence 3444444444334789999986543 2589999999999876 7777778888877655
No 277
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=28.58 E-value=1.5e+02 Score=23.44 Aligned_cols=64 Identities=20% Similarity=0.148 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCCCc----ccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhc
Q 025575 105 VRACCEASLKRLDIDC----IDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 170 (250)
Q Consensus 105 i~~~l~~sL~~L~~d~----iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 170 (250)
.++.++..++.+|++. ++.+.-.+ .......++.+.|+.|++.| ++-.-+||.+...+...++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAY-LRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 3455666777776541 11111111 11123456788899999887 45566788777776665554
No 278
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=28.54 E-value=3.1e+02 Score=27.44 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=48.7
Q ss_pred HHHHHHHH--HHHHcCCcceEecCcccHHHH---------------HHHhhcCCceEEeeecCcCCcCchhhhHHHHHHh
Q 025575 136 EVTIGELK--KLVEEGKIKYIGLSEACAATI---------------RRAHAVHPITAVQLEWSLWSRDVEAEIVPTCREL 198 (250)
Q Consensus 136 ~~~~~~l~--~l~~~G~ir~iGvSn~~~~~l---------------~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~ 198 (250)
+.+.++++ ++.+ .|.-+|++--..+.+ +.++.++-++++-+.++-..+ .+.+.|++.
T Consensus 251 ~~iv~~~~~~el~~--gI~~~GiCCTg~e~~R~~~g~~~~Gn~~~qe~~i~TGavD~~VvD~QCi~p----~L~eiA~~y 324 (781)
T PRK00941 251 TYIIDYLEENGLTD--KVEVCGICCTAIDITRYSEKAKVVGPLSKQLKFIRSGIPDVIVVDEQCVRT----DILEEAKKL 324 (781)
T ss_pred HHHHHHHhCcchhh--CceEEEEecccchHhhhccCCcccCcHHHHHHHHHcCCCcEEEEecccCcc----cHHHHHHHh
Confidence 45566655 4444 666667765433322 223445777888888776654 789999999
Q ss_pred CCeEEEeccCccCcCC
Q 025575 199 GIGIVAYGPLGQGFLS 214 (250)
Q Consensus 199 gi~via~spl~~G~L~ 214 (250)
|.++|+.++-.+=-|-
T Consensus 325 gt~lItTs~k~~~eLP 340 (781)
T PRK00941 325 GIPVIATNDKICLGLP 340 (781)
T ss_pred CCCEEEecccccccCC
Confidence 9999999988754444
No 279
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=28.51 E-value=3.5e+02 Score=24.28 Aligned_cols=54 Identities=9% Similarity=-0.089 Sum_probs=35.2
Q ss_pred ccHHHHHHHhhc-CCceEEeeecCcCCcC-chhhhHHHHHHhCCeEEEeccCccCc
Q 025575 159 ACAATIRRAHAV-HPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYGPLGQGF 212 (250)
Q Consensus 159 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~spl~~G~ 212 (250)
.+.+.+++++.. .+..++..+.||.-.. ..+++.+.|+++|+.++.=...+.+.
T Consensus 134 ~d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~ 189 (390)
T PRK08133 134 TDLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPA 189 (390)
T ss_pred CCHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 356777776643 3455555566765432 23689999999999998655554443
No 280
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=28.42 E-value=3.4e+02 Score=24.53 Aligned_cols=55 Identities=13% Similarity=0.056 Sum_probs=36.9
Q ss_pred ccHHHHHHHhhc-CCceEEeeecCcCCcCch-hhhHHHHHHhCCeEEEeccCccCcC
Q 025575 159 ACAATIRRAHAV-HPITAVQLEWSLWSRDVE-AEIVPTCRELGIGIVAYGPLGQGFL 213 (250)
Q Consensus 159 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~via~spl~~G~L 213 (250)
.+.+.+++++.. .+..++..+.|+.-.-.+ +++.+.|+++|+.++.=...+.+.+
T Consensus 143 ~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~ 199 (403)
T PRK07810 143 EDLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLL 199 (403)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCcccc
Confidence 467777777643 445555667777654322 5899999999999996555555544
No 281
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=28.33 E-value=3.7e+02 Score=22.78 Aligned_cols=104 Identities=15% Similarity=0.055 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceE--ecCcccHHHHHHHhhcCCceEEe
Q 025575 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYI--GLSEACAATIRRAHAVHPITAVQ 177 (250)
Q Consensus 100 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~i--GvSn~~~~~l~~~~~~~~~~~~q 177 (250)
.+-+.|...+.+.-+ +--|+.=||+-|+.. ...+++.|++|.+.|-=-.+ |||.|......-=.+..-+.+.|
T Consensus 59 ~tLeeIi~~m~~a~~----~Gk~VvRLhSGDpsi-YgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vsQ 133 (254)
T COG2875 59 LTLEEIIDLMVDAVR----EGKDVVRLHSGDPSI-YGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVSQ 133 (254)
T ss_pred CCHHHHHHHHHHHHH----cCCeEEEeecCChhH-HHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCcce
Confidence 345555554444433 456889999877643 56788999999999864444 88887654332222333343444
Q ss_pred e----ecCcCCcCchhhhHHHHHHhCCeEEEeccC
Q 025575 178 L----EWSLWSRDVEAEIVPTCRELGIGIVAYGPL 208 (250)
Q Consensus 178 ~----~~n~~~~~~~~~~~~~~~~~gi~via~spl 208 (250)
. ..+--.+.++.+-++...++|..+..|-..
T Consensus 134 tvilTR~sgrt~vpe~e~l~~la~~~aTm~I~L~v 168 (254)
T COG2875 134 TVILTRPSGRTPVPEKESLAALAKHGATMVIFLGV 168 (254)
T ss_pred eEEEEccccCCCCCchhHHHHHHhcCceeEeeehh
Confidence 3 444444444568888888888877766443
No 282
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=28.31 E-value=4.4e+02 Score=23.63 Aligned_cols=101 Identities=12% Similarity=0.061 Sum_probs=54.3
Q ss_pred HHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhc-CCceEEeeecCcCCcC
Q 025575 108 CCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV-HPITAVQLEWSLWSRD 186 (250)
Q Consensus 108 ~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~ 186 (250)
++...+..| +..=|-+++..|.. ..++..+..+...-.++..-+...+.+.+++++.. .+..++..+.||.-..
T Consensus 88 Ai~~~l~al-l~~Gd~Vl~~~~~y----~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie~p~NPtg~~ 162 (388)
T PRK07811 88 ATDCLLRAV-LRPGDHIVIPNDAY----GGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVETPTNPLLSI 162 (388)
T ss_pred HHHHHHHHH-hCCCCEEEEcCCCc----hHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEECCCCCccee
Confidence 344444444 23346666655433 23333333332221222222333467788777643 3445555666764332
Q ss_pred -chhhhHHHHHHhCCeEEEeccCccCcC
Q 025575 187 -VEAEIVPTCRELGIGIVAYGPLGQGFL 213 (250)
Q Consensus 187 -~~~~~~~~~~~~gi~via~spl~~G~L 213 (250)
..+++.+.|+++|+.++.=...+.+..
T Consensus 163 ~dl~~I~~la~~~gi~lIvD~a~a~~~~ 190 (388)
T PRK07811 163 TDIAALAELAHDAGAKVVVDNTFASPYL 190 (388)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCCcccc
Confidence 226899999999999997666655543
No 283
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=28.29 E-value=4.1e+02 Score=23.29 Aligned_cols=75 Identities=11% Similarity=0.032 Sum_probs=39.2
Q ss_pred HHHHHHcCCCcccEEEeecCCCCCCHHHH-HHHHHHHHHcCCcceEecCcccHHHHHHHhhcCCceEEeeecCcCCcCch
Q 025575 110 EASLKRLDIDCIDLYYQHRVDTKIPIEVT-IGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVE 188 (250)
Q Consensus 110 ~~sL~~L~~d~iDl~~lh~p~~~~~~~~~-~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~ 188 (250)
+.-|+..|+++|==+++-. +.....++. .+.++++.++.+ .|++.++...+.. +.+. .+
T Consensus 104 d~~Lr~~ginRI~dv~ip~-e~y~~~E~~i~~i~~~~~~~~~-------~~s~~e~i~~lGk--------~i~~----~e 163 (301)
T TIGR00321 104 DKKLREEGINRIGDVFVPN-ENFEVFEEWLVEIFSEMLGEQP-------IITPSEFIDEIGK--------RIND----KR 163 (301)
T ss_pred hHHHHHcCCCccceecCCH-HHHHHHHHHHHHHHHHHHhcCC-------CcCHHHHHHHHHh--------hcCC----cc
Confidence 5566667766654444432 111122222 234455444333 3566655443322 0110 24
Q ss_pred hhhHHHHHHhCCeEEE
Q 025575 189 AEIVPTCRELGIGIVA 204 (250)
Q Consensus 189 ~~~~~~~~~~gi~via 204 (250)
..++-+|.++||+|.+
T Consensus 164 ~Sil~~Ayk~~VPIf~ 179 (301)
T TIGR00321 164 SSIRYAAYKRKIPIFC 179 (301)
T ss_pred chHHHHHHHcCCCEEC
Confidence 6899999999999985
No 284
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=28.28 E-value=1.1e+02 Score=22.17 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=30.3
Q ss_pred cccHHHHHHHhhc-CCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEecc
Q 025575 158 EACAATIRRAHAV-HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGP 207 (250)
Q Consensus 158 n~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~sp 207 (250)
..+.+.+..+... ++|+++-+--.--......++.++++++||.+..+..
T Consensus 38 ~l~~~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T 88 (110)
T PF04430_consen 38 DLTPEDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDT 88 (110)
T ss_dssp CEETHHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-H
T ss_pred cCCHHHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECH
Confidence 3456777777665 4566655533322222336899999999999987753
No 285
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=28.19 E-value=3.2e+02 Score=22.22 Aligned_cols=90 Identities=17% Similarity=0.163 Sum_probs=52.4
Q ss_pred HcCCCcccEEEee-cCCCC-CCHH----HHHHHHHHHHHcCCcceEecCcccHHHHHHHhhcCCceEEeeecCcCCcCch
Q 025575 115 RLDIDCIDLYYQH-RVDTK-IPIE----VTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVE 188 (250)
Q Consensus 115 ~L~~d~iDl~~lh-~p~~~-~~~~----~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~ 188 (250)
.-|.++||+=.-- +|... .+.+ .+...++.+++..-=--|.+-++.++.++++++. ..+++ +..+-+.. .
T Consensus 30 ~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~-g~~~i-nd~~~~~~--~ 105 (210)
T PF00809_consen 30 EAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKA-GADII-NDISGFED--D 105 (210)
T ss_dssp HTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH-TSSEE-EETTTTSS--S
T ss_pred HhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHc-CcceE-Eecccccc--c
Confidence 3488888886332 23211 1222 3445555555411112467778999999999887 33322 11122221 3
Q ss_pred hhhHHHHHHhCCeEEEeccC
Q 025575 189 AEIVPTCRELGIGIVAYGPL 208 (250)
Q Consensus 189 ~~~~~~~~~~gi~via~spl 208 (250)
+++++.++++|..++++..-
T Consensus 106 ~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 106 PEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp TTHHHHHHHHTSEEEEESES
T ss_pred chhhhhhhcCCCEEEEEecc
Confidence 68999999999999987655
No 286
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=28.18 E-value=2.6e+02 Score=22.80 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHcCCCeEeC
Q 025575 37 EPDMIALIHHAINSGITLLDT 57 (250)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~Dt 57 (250)
++.....++.|++.|.+.+++
T Consensus 13 pENTl~af~~A~~~Gad~iE~ 33 (226)
T cd08568 13 PENTLEAFKKAIEYGADGVEL 33 (226)
T ss_pred CcchHHHHHHHHHcCcCEEEE
Confidence 467888999999999998874
No 287
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=27.70 E-value=3.4e+02 Score=24.72 Aligned_cols=83 Identities=13% Similarity=0.154 Sum_probs=44.8
Q ss_pred cccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhc---CCceEEeeecCcCCcCchhhhHHHHH
Q 025575 120 CIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV---HPITAVQLEWSLWSRDVEAEIVPTCR 196 (250)
Q Consensus 120 ~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~~~~~~~ 196 (250)
.+|++-++.-..+ |.++..+..++..+.-.+ -+=+...+++.++++++. .++-. |..-..+ -+++.+.|+
T Consensus 69 ~~D~Ialr~~S~D-Pae~fa~~vk~V~~a~~~-PLIL~~~D~evl~aale~~~~~kpLL----~aAt~eN-yk~m~~lA~ 141 (386)
T PF03599_consen 69 GADMIALRLESGD-PAEEFAKAVKKVAEAVDV-PLILCGCDPEVLKAALEACAGKKPLL----YAATEEN-YKAMAALAK 141 (386)
T ss_dssp E-SEEEEE-GGGS-THHHHHHHHHHHHHC-SS-EEEEESSHHHHHHHHHHHTTTS--EE----EEEBTTT-HHHHHHHHH
T ss_pred cccEEEEEecCCC-hHHHHHHHHHHHHHhcCC-CEEEEeCCHHHHHHHHHHhCcCCcEE----eEcCHHH-HHHHHHHHH
Confidence 5677777764322 145666666666654333 333334478888877665 22211 2222222 258888888
Q ss_pred HhCCeEEEeccCc
Q 025575 197 ELGIGIVAYGPLG 209 (250)
Q Consensus 197 ~~gi~via~spl~ 209 (250)
++|..+++.+|..
T Consensus 142 ~y~~pl~v~sp~D 154 (386)
T PF03599_consen 142 EYGHPLIVSSPID 154 (386)
T ss_dssp HCT-EEEEE-SSC
T ss_pred HcCCeEEEEeccc
Confidence 9999988888763
No 288
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=27.68 E-value=3.7e+02 Score=22.56 Aligned_cols=86 Identities=12% Similarity=0.044 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcCCCC-hHHHHHHHhcCCCCC-CEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYGPYT-NEILVGKALKGGMRE-RVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~-sE~~lg~~l~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL 113 (250)
+.+++.+.+..+...+.+.++---.|=... +...+-..+.....+ .+.++-+.... |.....+.+.-.+-+....
T Consensus 12 ~~~~~~e~~~~~~~~~~Di~E~RvD~l~~~~~~~~~~~~~~e~~~~~~~IfT~R~~~E---GG~~~~~~~~~i~ll~~la 88 (231)
T COG0710 12 DIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLIFTFRTVKE---GGEFPGSEEEYIELLKKLA 88 (231)
T ss_pred CHHHHHHHHHHhhccCCCEEEEeechhcccchHHHHHHHHHHhccCCceEEEEeehhh---cCCCCCCHHHHHHHHHHHH
Confidence 567788888888888888777654443211 233333444443333 45555553211 1112345666666677777
Q ss_pred HHcCCCcccEE
Q 025575 114 KRLDIDCIDLY 124 (250)
Q Consensus 114 ~~L~~d~iDl~ 124 (250)
+.-+.+|+|+=
T Consensus 89 ~~~~~d~iDiE 99 (231)
T COG0710 89 ELNGPDYIDIE 99 (231)
T ss_pred hhcCCCEEEEE
Confidence 76678999973
No 289
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=27.65 E-value=4.1e+02 Score=23.06 Aligned_cols=57 Identities=19% Similarity=0.185 Sum_probs=40.9
Q ss_pred HHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHh
Q 025575 109 CEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAH 168 (250)
Q Consensus 109 l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~ 168 (250)
..+.+...+...=|+++.-...-.. .+++.+++.+++.| ++-|++++.....+.+..
T Consensus 116 ~~~~l~a~~l~~~DvvI~IS~SG~T--~~vi~al~~Ak~~G-a~~IaIT~~~~s~La~~a 172 (296)
T PRK12570 116 GAQDLKAIGLTADDVVVGIAASGRT--PYVIGALEYAKQIG-ATTIALSCNPDSPIAKIA 172 (296)
T ss_pred HHHHHHHcCCCCCCEEEEEeCCCCC--HHHHHHHHHHHHCC-CeEEEEECCCCChhHHhC
Confidence 3444555665666999887765443 36899999999998 677999988766665543
No 290
>PRK09776 putative diguanylate cyclase; Provisional
Probab=27.65 E-value=1.3e+02 Score=30.68 Aligned_cols=101 Identities=16% Similarity=0.064 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeecCCCC--CCHHHHHHHHHHHHHcCCcceEecCcccH--HHHHHHhhcCCceEEe
Q 025575 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTK--IPIEVTIGELKKLVEEGKIKYIGLSEACA--ATIRRAHAVHPITAVQ 177 (250)
Q Consensus 102 ~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~--~~~~~~~~~l~~l~~~G~ir~iGvSn~~~--~~l~~~~~~~~~~~~q 177 (250)
...+...+.+.|++.++. .+-+.+.-.+.. .+.+.+...++.|++.|- .|.+.+|.. ..+..+.+ .+++.+=
T Consensus 939 ~~~~~~~~~~~l~~~~~~-~~~l~~Ei~e~~~~~~~~~~~~~~~~l~~~G~--~~~lddfg~g~~~~~~l~~-~~~d~iK 1014 (1092)
T PRK09776 939 SPTLLPFLLEQLENSPLP-PRLLHLEITETALLNHAESASRLVQKLRLAGC--RVVLSDFGRGLSSFNYLKA-FMADYLK 1014 (1092)
T ss_pred CchHHHHHHHHHHhcCCC-HHHeEEEEecHHhhcCHHHHHHHHHHHHHCCc--EEEEcCCCCCchHHHHHHh-CCCCEEE
Confidence 344556677777777653 344444443332 356678899999999996 344444422 12222222 2344443
Q ss_pred eecCcC--------CcCchhhhHHHHHHhCCeEEEec
Q 025575 178 LEWSLW--------SRDVEAEIVPTCRELGIGIVAYG 206 (250)
Q Consensus 178 ~~~n~~--------~~~~~~~~~~~~~~~gi~via~s 206 (250)
+.-+.. .+.....++..|++.|+.++|-+
T Consensus 1015 id~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iaeg 1051 (1092)
T PRK09776 1015 LDGELVANLHGNLMDEMLISIIQGHAQRLGMKTIAGP 1051 (1092)
T ss_pred ECHHHHHhHhcChhhHHHHHHHHHHHHHcCCcEEecc
Confidence 332222 22222578889999999999754
No 291
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=27.09 E-value=5.1e+02 Score=23.96 Aligned_cols=75 Identities=24% Similarity=0.365 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCC-cceEecCccc---HHHHHHHhhc-CC---ceEEeeecCcCCcCchhhhHHHHHHhCCeEEEeccC
Q 025575 137 VTIGELKKLVEEGK-IKYIGLSEAC---AATIRRAHAV-HP---ITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPL 208 (250)
Q Consensus 137 ~~~~~l~~l~~~G~-ir~iGvSn~~---~~~l~~~~~~-~~---~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 208 (250)
-+....+.++++|. ++++.|.+-. .+.++++++. .. ++.+..+.... .+-+++...|++.||.|.+=..-
T Consensus 143 ~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~--~Pv~EI~~icr~~~v~v~~DaAQ 220 (428)
T KOG1549|consen 143 CVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVL--QPVKEIVKICREEGVQVHVDAAQ 220 (428)
T ss_pred chhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCcccc--ccHHHHHHHhCcCCcEEEeehhh
Confidence 35667778888885 4788887543 4445555543 22 22222232232 33479999999999988876665
Q ss_pred ccCcC
Q 025575 209 GQGFL 213 (250)
Q Consensus 209 ~~G~L 213 (250)
+-|..
T Consensus 221 avG~i 225 (428)
T KOG1549|consen 221 AVGKI 225 (428)
T ss_pred hcCCc
Confidence 55543
No 292
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=27.09 E-value=4.7e+02 Score=23.55 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=15.0
Q ss_pred CChHHHHHHHH-------HHHHcCCCeEeC
Q 025575 35 EPEPDMIALIH-------HAINSGITLLDT 57 (250)
Q Consensus 35 ~~~~~~~~~l~-------~A~~~Gi~~~Dt 57 (250)
.+.+++.++++ .|.++|+.-++-
T Consensus 139 mt~~eI~~ii~~f~~AA~rA~~AGFDgVEI 168 (363)
T COG1902 139 LTEEEIEEVIEDFARAARRAKEAGFDGVEI 168 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 45666655554 456789987774
No 293
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=27.01 E-value=75 Score=17.52 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHcCCC
Q 025575 38 PDMIALIHHAINSGIT 53 (250)
Q Consensus 38 ~~~~~~l~~A~~~Gi~ 53 (250)
++..+++..|.+.|+.
T Consensus 3 ~EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 3 EEWVELIKEAKESGLS 18 (30)
T ss_dssp HHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHcCCC
Confidence 5688999999999975
No 294
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=26.55 E-value=2e+02 Score=21.78 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCc
Q 025575 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE 158 (250)
Q Consensus 100 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn 158 (250)
.+.+.+...+++.++. .-+.-.+=..|...+...+.+.|..+++.| +..|++..
T Consensus 81 v~~~~L~~~L~~~~~~----~~~~~V~I~aD~~~~~~~vv~vmd~l~~aG-~~~v~l~t 134 (141)
T PRK11267 81 VTDETMITALDALTEG----KKDTTIFFRADKTVDYETLMKVMDTLHQAG-YLKIGLVG 134 (141)
T ss_pred ccHHHHHHHHHHHHhc----CCCceEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEe
Confidence 4555555555554432 223333344577788999999999999999 45577754
No 295
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=26.48 E-value=2.6e+02 Score=24.10 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHc--CCCeEeCcCCcCCCChHHHHHHHhcCCC-CCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHH
Q 025575 37 EPDMIALIHHAINS--GITLLDTSDIYGPYTNEILVGKALKGGM-RERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (250)
Q Consensus 37 ~~~~~~~l~~A~~~--Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL 113 (250)
-+.+..+.++|+.+ |+.+.-. .|..=.++..+-+.+.... ..-+++.|=+. ..+++.+++..
T Consensus 15 GeTAe~v~~A~l~QF~~~~~~~~--~~p~v~~~~~~~~i~~~~~~~~~iV~~Tlv~-------------~elr~~l~~~~ 79 (269)
T PRK05339 15 GETAETVGRAALSQFPNVEFEEH--RYPFVRTEEKADEVLEEINAERPIVFYTLVD-------------PELREILEERC 79 (269)
T ss_pred HHHHHHHHHHHHHhCCCCCeeEE--EeCCcCCHHHHHHHHHHHHhcCCEEEEeCCC-------------HHHHHHHHHHH
Confidence 35667777777754 4543211 2222226777777776653 34455555443 35889999999
Q ss_pred HHcCCCcccEE
Q 025575 114 KRLDIDCIDLY 124 (250)
Q Consensus 114 ~~L~~d~iDl~ 124 (250)
+.+++.++|++
T Consensus 80 ~~~~i~~vdll 90 (269)
T PRK05339 80 AEFGIPCIDIL 90 (269)
T ss_pred HHcCCCEEecc
Confidence 99999999997
No 296
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=26.46 E-value=1e+02 Score=26.75 Aligned_cols=49 Identities=18% Similarity=0.116 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHcCCCcc--cEEEeecCCCCCCHHHHHHHHHHHHHcCCcce
Q 025575 102 PAYVRACCEASLKRLDIDCI--DLYYQHRVDTKIPIEVTIGELKKLVEEGKIKY 153 (250)
Q Consensus 102 ~~~i~~~l~~sL~~L~~d~i--Dl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~ 153 (250)
.+...+.+.+.+++||+.+- .-+.-+.| ...+.+++.+++|+++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~---~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEP---EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCH---HHHHHHHHHHHHHHHCCCEEe
Confidence 56677888999999998532 22222222 235678999999999999843
No 297
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=26.46 E-value=2.5e+02 Score=25.27 Aligned_cols=128 Identities=11% Similarity=0.105 Sum_probs=65.4
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHH----HH---hcCC-CCCCEEEEeeeCcccCCCCCCCCCHHHHH
Q 025575 35 EPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVG----KA---LKGG-MRERVELATKFGISFADGGKIRGDPAYVR 106 (250)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg----~~---l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~i~ 106 (250)
.+.++..++++.+.+.|++.|-- .| | |.++- +. +++. .-..+.|+|-... +.
T Consensus 90 ls~eei~~~i~~~~~~Gv~~I~~---tG-G--EPllr~dl~eli~~l~~~~gi~~i~itTNG~l--------------L~ 149 (373)
T PLN02951 90 LSQDEIVRLAGLFVAAGVDKIRL---TG-G--EPTLRKDIEDICLQLSSLKGLKTLAMTTNGIT--------------LS 149 (373)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE---EC-C--CCcchhhHHHHHHHHHhcCCCceEEEeeCcch--------------HH
Confidence 35678888888888999987753 33 2 33322 22 2221 1123445443211 11
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCC--------CCCHHHHHHHHHHHHHcCCc----ceEecCcccHHHHHHHhhc---C
Q 025575 107 ACCEASLKRLDIDCIDLYYQHRVDT--------KIPIEVTIGELKKLVEEGKI----KYIGLSEACAATIRRAHAV---H 171 (250)
Q Consensus 107 ~~l~~sL~~L~~d~iDl~~lh~p~~--------~~~~~~~~~~l~~l~~~G~i----r~iGvSn~~~~~l~~~~~~---~ 171 (250)
+.+ ..|...|++.|- +-|+..++ ....+.+++.++.+++.|.. ..+-+-.++.+++.++++. .
T Consensus 150 ~~~-~~L~~aGld~Vn-ISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~~~ 227 (373)
T PLN02951 150 RKL-PRLKEAGLTSLN-ISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTRDK 227 (373)
T ss_pred HHH-HHHHhCCCCeEE-EeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHHhC
Confidence 222 233344544332 12233322 12356788999999988852 1223334566666665443 4
Q ss_pred CceEEeeecCcCC
Q 025575 172 PITAVQLEWSLWS 184 (250)
Q Consensus 172 ~~~~~q~~~n~~~ 184 (250)
++.+.-++|.|+.
T Consensus 228 gi~vr~ie~mP~~ 240 (373)
T PLN02951 228 PINVRFIEFMPFD 240 (373)
T ss_pred CCeEEEEEcccCC
Confidence 4555556666554
No 298
>PRK08084 DNA replication initiation factor; Provisional
Probab=26.40 E-value=1.8e+02 Score=24.07 Aligned_cols=45 Identities=7% Similarity=0.132 Sum_probs=32.8
Q ss_pred cccEEEeecCCCCC---C-HHHHHHHHHHHHHcCCcceEecCcccHHHH
Q 025575 120 CIDLYYQHRVDTKI---P-IEVTIGELKKLVEEGKIKYIGLSEACAATI 164 (250)
Q Consensus 120 ~iDl~~lh~p~~~~---~-~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 164 (250)
..|+++|...+... . -++..+.+..+++.|+++-|+.|+..+..+
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQL 145 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHc
Confidence 35888887664422 1 234568888999999999999999877764
No 299
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=26.22 E-value=2.5e+02 Score=20.36 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=28.2
Q ss_pred CcccHHHHHHHhhcCCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEecc
Q 025575 157 SEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGP 207 (250)
Q Consensus 157 Sn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~sp 207 (250)
+..+.+.++.++... |+++-+--.--......++.+.++++||++..+..
T Consensus 38 ~~l~~e~l~~l~~~~-peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T 87 (109)
T cd05560 38 EDLTAAHFEALLALQ-PEVILLGTGERQRFPPPALLAPLLARGIGVEVMDT 87 (109)
T ss_pred ccCCHHHHHHHHhcC-CCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECH
Confidence 344566666665542 34443322211111125788999999999987653
No 300
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=25.90 E-value=4e+02 Score=22.42 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=78.4
Q ss_pred HHHHHcCCCeEeCcCC-cCC-C-ChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 025575 45 HHAINSGITLLDTSDI-YGP-Y-TNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCI 121 (250)
Q Consensus 45 ~~A~~~Gi~~~DtA~~-Yg~-g-~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~i 121 (250)
..|++.|..+||.=+- -|. | .....+. .++..-..+.-|+..++-. ...|..+..+....- .-|+|||
T Consensus 14 ~~a~~~gaDiID~K~P~~GaLGA~~~~vi~-~i~~~~~~~~pvSAtiGDl-------p~~p~~~~~aa~~~a-~~Gvdyv 84 (235)
T PF04476_consen 14 EEALAGGADIIDLKNPAEGALGALFPWVIR-EIVAAVPGRKPVSATIGDL-------PMKPGTASLAALGAA-ATGVDYV 84 (235)
T ss_pred HHHHhCCCCEEEccCCCCCCCCCCCHHHHH-HHHHHcCCCCceEEEecCC-------CCCchHHHHHHHHHH-hcCCCEE
Confidence 4567899999997432 221 2 2333443 3333333336677777643 234555655444433 3588887
Q ss_pred cEEEeecCCCCCCHHHHHHHHHHH-------HHcCCcceEecCcc------cHHHHHHHhhcCCceEEeeec------Cc
Q 025575 122 DLYYQHRVDTKIPIEVTIGELKKL-------VEEGKIKYIGLSEA------CAATIRRAHAVHPITAVQLEW------SL 182 (250)
Q Consensus 122 Dl~~lh~p~~~~~~~~~~~~l~~l-------~~~G~ir~iGvSn~------~~~~l~~~~~~~~~~~~q~~~------n~ 182 (250)
-+=+.-..+ .++..+.|+.+ ..+.++-..+.+.+ ++..+.++.....++.+++.- ++
T Consensus 85 KvGl~g~~~----~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L 160 (235)
T PF04476_consen 85 KVGLFGCKD----YDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKDGGSL 160 (235)
T ss_pred EEecCCCCC----HHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCCCCch
Confidence 776553322 33333333333 22345667787776 345555555444567777643 23
Q ss_pred CCcCc---hhhhHHHHHHhCCeE
Q 025575 183 WSRDV---EAEIVPTCRELGIGI 202 (250)
Q Consensus 183 ~~~~~---~~~~~~~~~~~gi~v 202 (250)
+..-. ..+.++.|+++|+.+
T Consensus 161 ~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 161 FDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred hhcCCHHHHHHHHHHHHHccchh
Confidence 32211 146888888888754
No 301
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=25.88 E-value=30 Score=32.05 Aligned_cols=53 Identities=19% Similarity=0.332 Sum_probs=33.3
Q ss_pred CCcceEecCcccHHHHHHHhhcCC-ceEEeeecCcCCcCchhhhHHHHHHhCCe
Q 025575 149 GKIKYIGLSEACAATIRRAHAVHP-ITAVQLEWSLWSRDVEAEIVPTCRELGIG 201 (250)
Q Consensus 149 G~ir~iGvSn~~~~~l~~~~~~~~-~~~~q~~~n~~~~~~~~~~~~~~~~~gi~ 201 (250)
+.++.+|+..++.+.+.++..... -+.++....++.-..+.++++.+++.||.
T Consensus 264 ~~Ar~fG~ll~d~d~i~eaa~~~~~~~~y~~~~~~~ldp~dp~v~~~A~~~gi~ 317 (492)
T TIGR01660 264 GRIRYLGVLLYDADKIEEAASTENEKDLYHRQLDVFLDPNDPEVIAQAKKDGIP 317 (492)
T ss_pred hhhhhhhhhccCcHHHHHHHhcccchhHHHHhhceecCCCCHHHHHHHHHcCCC
Confidence 567889999888888877765522 23444444444433345677777777664
No 302
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=25.75 E-value=5.3e+02 Score=23.78 Aligned_cols=144 Identities=15% Similarity=0.093 Sum_probs=76.9
Q ss_pred ChHHHHHHHHHHHHc-CCCeEeCcCCcCC--CChH--HHHHHHhc-CC----CCCCEEEEeeeCcccCCCCCCCCCHHHH
Q 025575 36 PEPDMIALIHHAINS-GITLLDTSDIYGP--YTNE--ILVGKALK-GG----MRERVELATKFGISFADGGKIRGDPAYV 105 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~--g~sE--~~lg~~l~-~~----~R~~~~i~tK~~~~~~~~~~~~~~~~~i 105 (250)
+.+...+.+..+++. +-.. +..|+. |..+ ..+.+.+. .. ..++|+|++=.
T Consensus 105 p~~~~~~~~~~~~~~~~~~~---~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~----------------- 164 (459)
T COG1167 105 PLEALRRALARVLRNYGASL---ALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGA----------------- 164 (459)
T ss_pred CHHHHHHHHHHHHhhcchhh---hhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCH-----------------
Confidence 455666777666642 2221 223333 2122 23444444 21 45677775532
Q ss_pred HHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecC----cccHHHHHHHhhcCCceEE-----
Q 025575 106 RACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS----EACAATIRRAHAVHPITAV----- 176 (250)
Q Consensus 106 ~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS----n~~~~~l~~~~~~~~~~~~----- 176 (250)
..+++-.++-| ++.=|.+.+..|... .+..+.+.=-++.++|. +.+++.++++++..++..+
T Consensus 165 q~al~l~~~~l-~~pGd~v~vE~PtY~--------~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~ 235 (459)
T COG1167 165 QQALDLLLRLL-LDPGDTVLVEDPTYP--------GALQALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPT 235 (459)
T ss_pred HHHHHHHHHHh-CCCCCEEEEcCCCcH--------HHHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCC
Confidence 23455444444 345588888888542 22233333345677776 3467888887765333332
Q ss_pred -eeecCcCCcCc-hhhhHHHHHHhCCeEEEeccC
Q 025575 177 -QLEWSLWSRDV-EAEIVPTCRELGIGIVAYGPL 208 (250)
Q Consensus 177 -q~~~n~~~~~~-~~~~~~~~~~~gi~via~spl 208 (250)
|++........ -..++++|+++++.+|-=-+.
T Consensus 236 ~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y 269 (459)
T COG1167 236 FQNPTGVTMSLERRKALLALAEKYDVLIIEDDYY 269 (459)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcc
Confidence 33333222211 158999999999999954444
No 303
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=25.66 E-value=4.1e+02 Score=22.43 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=41.6
Q ss_pred HHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHh
Q 025575 110 EASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAH 168 (250)
Q Consensus 110 ~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~ 168 (250)
.+.+...+...=|+++.-...-.. .+++.+++.+++.| +.-|++++.....+.+..
T Consensus 108 ~~~l~a~~l~~~DvvI~IS~SG~T--~~vi~al~~Ak~~G-a~~I~It~~~~s~L~~~a 163 (257)
T cd05007 108 AADLQAINLTERDVVIGIAASGRT--PYVLGALRYARARG-ALTIGIACNPGSPLLQLA 163 (257)
T ss_pred HHHHHHcCCCCCCEEEEEeCCCCC--HHHHHHHHHHHHCC-CeEEEEECCCCChhHHhC
Confidence 344455666678999887765444 36999999999998 778999988777776654
No 304
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=25.53 E-value=5.6e+02 Score=23.96 Aligned_cols=105 Identities=14% Similarity=0.187 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHH----cCCcceEecC--cccHHHHHHHhhcC-
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVE----EGKIKYIGLS--EACAATIRRAHAVH- 171 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~----~G~ir~iGvS--n~~~~~l~~~~~~~- 171 (250)
.++.+.|.+.++. +...|...+-|+.=..| +..+++-+.+.++.+++ .|.++.|+|+ ..+.+++.++.+.+
T Consensus 114 ~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaGv 191 (469)
T PRK09613 114 KLTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAGI 191 (469)
T ss_pred ECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcCC
Confidence 4678889888875 46788776655421222 33467767777777775 5777767664 45778888877663
Q ss_pred -CceEEeeecC--------cCCc--Cch--hhhHHHHHHhCCeEEEe
Q 025575 172 -PITAVQLEWS--------LWSR--DVE--AEIVPTCRELGIGIVAY 205 (250)
Q Consensus 172 -~~~~~q~~~n--------~~~~--~~~--~~~~~~~~~~gi~via~ 205 (250)
.+.+.|=-|| |.-+ ..+ -+.++.+++.|+.-++.
T Consensus 192 ~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~ 238 (469)
T PRK09613 192 GTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGI 238 (469)
T ss_pred CEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCe
Confidence 3444554443 2211 112 37889999999874443
No 305
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=25.07 E-value=3.3e+02 Score=21.13 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHc--CCcceEecCcccHHHHHHHhhcCCceEE
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE--GKIKYIGLSEACAATIRRAHAVHPITAV 176 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~--G~ir~iGvSn~~~~~l~~~~~~~~~~~~ 176 (250)
..+-+.+.+.+++.-+.+|++ ++.+|-.. ..++++.+.+..+. |.|-.=|--+|+.-.+..++....+.++
T Consensus 25 ~~tl~~i~~~~~~~a~~~g~~-~~~~QSN~------EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~V 97 (146)
T PRK13015 25 HETLADVEALCRAAAEALGLE-VEFRQSNH------EGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELPVI 97 (146)
T ss_pred CCCHHHHHHHHHHHHHHcCCE-EEEEeeCc------HHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCCEE
Confidence 457888999999999999873 66665433 45788888887543 4444445556666667777776666677
Q ss_pred eeecCcCCc
Q 025575 177 QLEWSLWSR 185 (250)
Q Consensus 177 q~~~n~~~~ 185 (250)
.+..+-...
T Consensus 98 EVHiSNi~a 106 (146)
T PRK13015 98 EVHISNVHA 106 (146)
T ss_pred EEEcCCccc
Confidence 776664443
No 306
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=25.02 E-value=4.5e+02 Score=23.22 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=14.8
Q ss_pred hhhhHHHHHHhCCeEEE
Q 025575 188 EAEIVPTCRELGIGIVA 204 (250)
Q Consensus 188 ~~~~~~~~~~~gi~via 204 (250)
+..++-+|.++||+|++
T Consensus 174 e~Sil~~Ay~~~VPIf~ 190 (316)
T PRK02301 174 DSGILAAAYECDVPVYC 190 (316)
T ss_pred CCcHHHHHHHcCCCEEC
Confidence 36899999999999985
No 307
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=24.93 E-value=4.3e+02 Score=22.38 Aligned_cols=115 Identities=12% Similarity=0.002 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCcccCCC--CCCCCCHHHHHHHHHHH---HHH
Q 025575 41 IALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADG--GKIRGDPAYVRACCEAS---LKR 115 (250)
Q Consensus 41 ~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~--~~~~~~~~~i~~~l~~s---L~~ 115 (250)
.++++.|++.|..+|.--..-. + .++ +-..+++ ..-.+++...-+...... ..+..-.+.+.+.+++. +++
T Consensus 86 ~~v~e~al~~G~~iINdisg~~-~-~~~-~~~l~~~-~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 161 (257)
T cd00739 86 AEVARAALEAGADIINDVSGGS-D-DPA-MLEVAAE-YGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAES 161 (257)
T ss_pred HHHHHHHHHhCCCEEEeCCCCC-C-ChH-HHHHHHH-cCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHH
Confidence 3566777777877776332221 1 122 3344444 233455543322110000 00011123444445543 445
Q ss_pred cCCC----cccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCccc
Q 025575 116 LDID----CIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEAC 160 (250)
Q Consensus 116 L~~d----~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 160 (250)
.|++ ++|-.+- .......--++++.++.+++.|.=-.+|+||-+
T Consensus 162 ~Gi~~~~Ii~DPg~g-f~ks~~~~~~~l~~i~~l~~~~~pil~G~SrkS 209 (257)
T cd00739 162 AGVARNRIILDPGIG-FGKTPEHNLELLRRLDELKQLGLPVLVGASRKS 209 (257)
T ss_pred cCCCHHHEEEecCCC-cccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 5665 4444211 111111123578888888888877789999865
No 308
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=24.89 E-value=3.3e+02 Score=21.00 Aligned_cols=80 Identities=15% Similarity=0.165 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHH--cCCcceEecCcccHHHHHHHhhcCCceEE
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVE--EGKIKYIGLSEACAATIRRAHAVHPITAV 176 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~--~G~ir~iGvSn~~~~~l~~~~~~~~~~~~ 176 (250)
..+-+.+.+.+++.-+.+|++ ++.+|-.. ..++++.+.+..+ +|.|-.=|--+|+.-.+..++....+.++
T Consensus 23 ~~tl~~i~~~l~~~a~~~g~~-v~~~QSN~------Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~~~P~V 95 (140)
T cd00466 23 TTTLADIEALLRELAAELGVE-VEFFQSNH------EGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAVSIPVI 95 (140)
T ss_pred cCCHHHHHHHHHHHHHHcCCE-EEEEeeCc------HHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcCCCCEE
Confidence 457888999999999999973 67766443 4578888888754 24443335556666667777776666677
Q ss_pred eeecCcCCc
Q 025575 177 QLEWSLWSR 185 (250)
Q Consensus 177 q~~~n~~~~ 185 (250)
.+..+-...
T Consensus 96 EVHiSNi~a 104 (140)
T cd00466 96 EVHISNIHA 104 (140)
T ss_pred EEecCCccc
Confidence 777665443
No 309
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=24.75 E-value=4.6e+02 Score=22.71 Aligned_cols=165 Identities=15% Similarity=0.117 Sum_probs=93.4
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcCC-------CCh----HHHHHHHhc-------CCCCCCEEEEeeeCcccC---C
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYGP-------YTN----EILVGKALK-------GGMRERVELATKFGISFA---D 94 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-------g~s----E~~lg~~l~-------~~~R~~~~i~tK~~~~~~---~ 94 (250)
+++...++-+..+++|-+.+.|.....+ |.+ +++...+++ +..+.+++|+.-+++... +
T Consensus 44 ~Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~~l~~ 123 (304)
T PRK09485 44 NPELIYQVHLDYFRAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSVGPYGAYLAD 123 (304)
T ss_pred ChHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCcccccCC
Confidence 4455577778888999999998765432 222 233333332 112335888888887431 1
Q ss_pred C--C--CCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHc--CCcceEecCc---------c
Q 025575 95 G--G--KIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE--GKIKYIGLSE---------A 159 (250)
Q Consensus 95 ~--~--~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~--G~ir~iGvSn---------~ 159 (250)
+ . ....+.+.+++...+..+.|--.-+|++++.-... +.|...+++.+++. ++--.+.++- .
T Consensus 124 ~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~~---~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~~G~ 200 (304)
T PRK09485 124 GSEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETIPN---LDEAEALVELLKEEFPGVPAWLSFTLRDGTHISDGT 200 (304)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEeccCC---HHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCCCCC
Confidence 1 0 11357888888888888888556699999986533 56666666666644 4433333331 2
Q ss_pred cHHHHHHHh-hcCCceEEeeecCcCCcCchhhhHHHHHHh-CCeEEEe
Q 025575 160 CAATIRRAH-AVHPITAVQLEWSLWSRDVEAEIVPTCREL-GIGIVAY 205 (250)
Q Consensus 160 ~~~~l~~~~-~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~-gi~via~ 205 (250)
+.+.....+ +...++.+-+++. .+..-..+++...+. +..+++|
T Consensus 201 ~~~~~~~~l~~~~~~~~iGiNC~--~p~~~~~~l~~~~~~~~~pl~~~ 246 (304)
T PRK09485 201 PLAEAAALLAASPQVVAVGVNCT--APELVTAAIAALRAVTDKPLVVY 246 (304)
T ss_pred CHHHHHHHHhcCCCceEEEecCC--CHHHHHHHHHHHHhccCCcEEEE
Confidence 233333333 2234666666554 333223555555443 5566655
No 310
>PLN02880 tyrosine decarboxylase
Probab=24.59 E-value=3.5e+02 Score=25.30 Aligned_cols=25 Identities=8% Similarity=-0.006 Sum_probs=15.1
Q ss_pred hhhHHHHHHhCCeEEEeccCccCcC
Q 025575 189 AEIVPTCRELGIGIVAYGPLGQGFL 213 (250)
Q Consensus 189 ~~~~~~~~~~gi~via~spl~~G~L 213 (250)
.++.+.|+++|+-+..=..++++.+
T Consensus 259 ~eI~~i~~~~~iwlHVDaA~gg~~~ 283 (490)
T PLN02880 259 LELGKIAKSNGMWFHVDAAYAGSAC 283 (490)
T ss_pred HHHHHHHHHcCCEEEEehhhHHHHH
Confidence 4666666666666665555555533
No 311
>COG1325 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=24.50 E-value=2.1e+02 Score=22.20 Aligned_cols=91 Identities=15% Similarity=0.180 Sum_probs=57.9
Q ss_pred CcccCceeecccccCCCCCCCCChHHHHHHHHHHHHc-C---CCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeC
Q 025575 14 GLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINS-G---ITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFG 89 (250)
Q Consensus 14 g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~-G---i~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~ 89 (250)
-+.++.+...| .+.+...++|..++-. + +....+=.+||+ .=.++.+++-
T Consensus 9 ~i~~rv~iHaT----------ED~~kV~eAL~~~~p~~~~~e~ev~~aeGhyGN----------------pI~il~~~l~ 62 (149)
T COG1325 9 YIEIRVIIHAT----------EDEEKVLEALENFFPEAIDVEIEVTEAEGHYGN----------------PITILEVRLE 62 (149)
T ss_pred eEEEEEEEEcc----------CCHHHHHHHHHHhcCcccccceEEEEeecccCC----------------eEEEEEEEec
Confidence 34678888777 2677888888888844 3 477777778884 1234556654
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEe
Q 025575 90 ISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIG 155 (250)
Q Consensus 90 ~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iG 155 (250)
.+..+++-++..++.|+.+ +.+..|..|++=++..-+-|+=
T Consensus 63 -----------~~~~~~~flk~i~e~l~~e--------------d~~~l~~~le~rvD~~g~lylR 103 (149)
T COG1325 63 -----------RSREARKFLKKLRELLGEE--------------DREYLLETLEERVDENGVLYLR 103 (149)
T ss_pred -----------CcHHHHHHHHHHHHhcChH--------------HHHHHHHhhHhccCCCceEEEE
Confidence 2356778888888888643 2344555555555554344443
No 312
>KOG3380 consensus Actin-related protein Arp2/3 complex, subunit ARPC5 [Cytoskeleton]
Probab=24.43 E-value=64 Score=25.02 Aligned_cols=47 Identities=21% Similarity=0.205 Sum_probs=33.4
Q ss_pred HHHHHHHHcCCCcccEEE------eecCCCCCCHHHHHHHHHHHHHcCCcceE
Q 025575 108 CCEASLKRLDIDCIDLYY------QHRVDTKIPIEVTIGELKKLVEEGKIKYI 154 (250)
Q Consensus 108 ~l~~sL~~L~~d~iDl~~------lh~p~~~~~~~~~~~~l~~l~~~G~ir~i 154 (250)
.++++.+.|.++++|+++ +..|.....-...+.+.|++.+.+-+.+|
T Consensus 90 dI~~~v~~Ls~e~~DiLmKYiYkGm~~p~d~~s~~~LL~WHEk~~~~~GvG~I 142 (152)
T KOG3380|consen 90 DIEAAVKKLSTEEIDILMKYIYKGMEIPSDNSSCVSLLQWHEKLVAKSGVGCI 142 (152)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHhcCCceE
Confidence 578889999999999974 22344333334578888999988766655
No 313
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=24.27 E-value=2.7e+02 Score=20.47 Aligned_cols=49 Identities=12% Similarity=0.113 Sum_probs=27.6
Q ss_pred ccHHHHHHHhhc-CCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEecc
Q 025575 159 ACAATIRRAHAV-HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGP 207 (250)
Q Consensus 159 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~sp 207 (250)
.+.+.+..+... .+++++-+--..-.+....++.+.++++||.+..+..
T Consensus 40 l~~~~l~~l~~~~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T 89 (114)
T cd05125 40 ITEESLSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDT 89 (114)
T ss_pred CCHHHHHHHHhccCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECH
Confidence 345555555443 3445544433322222235788888888888887654
No 314
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=24.27 E-value=1.1e+02 Score=26.36 Aligned_cols=53 Identities=17% Similarity=0.041 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCccc
Q 025575 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEAC 160 (250)
Q Consensus 101 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 160 (250)
+-+.+.+-.++.|-..+ +..=+.=+..-||. ...-..|++|++.| +-||.||+
T Consensus 64 aN~iv~em~~eiLp~v~-~tPViaGv~atDP~---~~~~~fl~~lk~~G---f~GV~NfP 116 (268)
T PF09370_consen 64 ANEIVMEMAREILPVVK-DTPVIAGVCATDPF---RDMDRFLDELKELG---FSGVQNFP 116 (268)
T ss_dssp HHHHHHHHHHHHGGG-S-SS-EEEEE-TT-TT-----HHHHHHHHHHHT----SEEEE-S
T ss_pred HhHHHHHHHHhhhhhcc-CCCEEEEecCcCCC---CcHHHHHHHHHHhC---CceEEECC
Confidence 44445555567776665 33333444444443 45667788888888 47899985
No 315
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=24.25 E-value=5.8e+02 Score=23.64 Aligned_cols=112 Identities=12% Similarity=0.035 Sum_probs=58.4
Q ss_pred eCcCCcCCCChHHHHHHHhcCC----CC-CCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCC----cccEEEe
Q 025575 56 DTSDIYGPYTNEILVGKALKGG----MR-ERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDID----CIDLYYQ 126 (250)
Q Consensus 56 DtA~~Yg~g~sE~~lg~~l~~~----~R-~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d----~iDl~~l 126 (250)
+..-.|| .|+-+-++|++. +. +=++|.|-..+. .--+.+..-+++.-+.++-+ .+.++.+
T Consensus 63 E~d~VfG---G~~~L~~~I~~~~~~~~~p~~I~V~tTC~~e--------iIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v 131 (454)
T cd01973 63 EDSAVFG---GAKRVEEGVLVLARRYPDLRVIPIITTCSTE--------IIGDDIEGVIRKLNEALKEEFPDREVHLIPV 131 (454)
T ss_pred CCceEEC---cHHHHHHHHHHHHHhcCCCCEEEEECCchHh--------hhccCHHHHHHHHHhhhhhccCCCCCeEEEe
Confidence 3345788 677777787764 22 336666665432 12223333333332222111 3678899
Q ss_pred ecCCCCCCHH-HHHHHHHHHHH--------cCCcceEecCc--ccHHHHHHHhhcCCceEEee
Q 025575 127 HRVDTKIPIE-VTIGELKKLVE--------EGKIKYIGLSE--ACAATIRRAHAVHPITAVQL 178 (250)
Q Consensus 127 h~p~~~~~~~-~~~~~l~~l~~--------~G~ir~iGvSn--~~~~~l~~~~~~~~~~~~q~ 178 (250)
|.|+...... ....+++.+.+ +++|.-||-.+ .+.++|.++++...+.++.+
T Consensus 132 ~tpgF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 132 HTPSFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEe
Confidence 9987764332 22233333332 46677776433 24466777776655555544
No 316
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=24.15 E-value=4e+02 Score=21.83 Aligned_cols=21 Identities=10% Similarity=0.303 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHcCCCeEeC
Q 025575 37 EPDMIALIHHAINSGITLLDT 57 (250)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~Dt 57 (250)
.+.....++.|++.|++.|++
T Consensus 14 pENTl~Af~~A~~~G~d~iE~ 34 (237)
T cd08583 14 YTNSLDAFEHNYKKGYRVFEV 34 (237)
T ss_pred CccHHHHHHHHHHhCCCEEEE
Confidence 467888999999999998875
No 317
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=24.01 E-value=72 Score=17.54 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=14.0
Q ss_pred HHHHHHHHHcCCCeEeCc
Q 025575 41 IALIHHAINSGITLLDTS 58 (250)
Q Consensus 41 ~~~l~~A~~~Gi~~~DtA 58 (250)
.+.++.++++|+..|-|-
T Consensus 10 ~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHHcCCCEeeCC
Confidence 567899999999998764
No 318
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.00 E-value=69 Score=27.12 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=27.5
Q ss_pred ccCceeecccccCC------CCCCCCChHHHHHHHHHHHHcCC
Q 025575 16 EVSAQGLGCMAMSC------LYGPPEPEPDMIALIHHAINSGI 52 (250)
Q Consensus 16 ~vs~lglG~~~~g~------~~~~~~~~~~~~~~l~~A~~~Gi 52 (250)
+.|-..+|..+++. .|....+++++.+++..|+++||
T Consensus 158 ~~Pf~alGSGslaAmsvlEsr~k~dlt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 158 KLPFTALGSGSLAAMSVLESRWKPDLTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred ccceeeeccchHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhh
Confidence 34555666544442 37777799999999999999997
No 319
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=23.95 E-value=3e+02 Score=23.55 Aligned_cols=17 Identities=18% Similarity=0.301 Sum_probs=13.2
Q ss_pred HHHHHHHcCCCeEeCcC
Q 025575 43 LIHHAINSGITLLDTSD 59 (250)
Q Consensus 43 ~l~~A~~~Gi~~~DtA~ 59 (250)
.+...++.|||+||---
T Consensus 46 sI~~QL~~GvR~LdLdv 62 (267)
T cd08590 46 SITDQLDLGARFLELDV 62 (267)
T ss_pred CHHHHHhhCCcEEEEee
Confidence 46778899999999433
No 320
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=23.88 E-value=3.5e+02 Score=20.96 Aligned_cols=98 Identities=19% Similarity=0.147 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCCCC-CEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRE-RVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~ 114 (250)
+.+...++++.+++.|++-+-+.. ..+..+.+. ..+ ++-|..+++.... ....+...+.+++..
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~-~~~~~~~v~~~v~~~~~-----~~~~~~~~~~a~~a~- 75 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADA-LAGSDVPVIVVVGFPTG-----LTTTEVKVAEVEEAI- 75 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHH-hCCCCCeEEEEecCCCC-----CCcHHHHHHHHHHHH-
Confidence 567889999999999999877553 223333222 233 5667777764310 112444555555543
Q ss_pred HcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHc
Q 025575 115 RLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE 148 (250)
Q Consensus 115 ~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~ 148 (250)
++|.|.+.+..-+...+....+++.+.++++.+.
T Consensus 76 ~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~ 109 (201)
T cd00945 76 DLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEA 109 (201)
T ss_pred HcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHH
Confidence 4575544443222111111245667777777665
No 321
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=23.87 E-value=4.6e+02 Score=22.34 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=19.4
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcC
Q 025575 36 PEPDMIALIHHAINSGITLLDTSD 59 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~ 59 (250)
+.++..++.....+.||..||...
T Consensus 19 ~~~~~~~ia~~L~~~Gv~~iE~G~ 42 (275)
T cd07937 19 RTEDMLPIAEALDEAGFFSLEVWG 42 (275)
T ss_pred cHHHHHHHHHHHHHcCCCEEEccC
Confidence 566777787888899999999874
No 322
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=23.82 E-value=3.3e+02 Score=20.98 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHc--CCcceEecCcccHHHHHHHhhcCCceEE
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE--GKIKYIGLSEACAATIRRAHAVHPITAV 176 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~--G~ir~iGvSn~~~~~l~~~~~~~~~~~~ 176 (250)
..+-+.+++.+++....+|++ +|++|-.. ..++++.+.+..++ |.|-.=|--+++.-.+..++......++
T Consensus 24 ~~tl~~i~~~~~~~a~~~g~~-v~~~QSN~------EGelid~I~~a~~~~dgiIINpga~thtS~Ai~DAl~~~~~P~v 96 (140)
T PF01220_consen 24 TTTLEDIEQKCKETAAELGVE-VEFFQSNH------EGELIDWIHEARDDVDGIIINPGAYTHTSIAIRDALKAISIPVV 96 (140)
T ss_dssp SSHHHHHHHHHHHHHHHTTEE-EEEEE-SS------HHHHHHHHHHHTCTTSEEEEE-GGGGHT-HHHHHHHHCCTS-EE
T ss_pred cCCHHHHHHHHHHHHHHCCCe-EEEEecCC------HHHHHHHHHHHHhhCCEEEEccchhccccHHHHHHHHcCCCCEE
Confidence 446788999999999999863 66665433 56788888888654 4454446666666677777777665677
Q ss_pred eeecCcCCc
Q 025575 177 QLEWSLWSR 185 (250)
Q Consensus 177 q~~~n~~~~ 185 (250)
.+..+-...
T Consensus 97 EVHiSNi~~ 105 (140)
T PF01220_consen 97 EVHISNIHA 105 (140)
T ss_dssp EEESS-GGG
T ss_pred EEEcCCccc
Confidence 777765544
No 323
>PRK07671 cystathionine beta-lyase; Provisional
Probab=23.71 E-value=4.9e+02 Score=23.21 Aligned_cols=52 Identities=10% Similarity=-0.041 Sum_probs=31.4
Q ss_pred cHHHHHHHhhc-CCceEEeeecCcCCcC-chhhhHHHHHHhCCeEEEeccCccC
Q 025575 160 CAATIRRAHAV-HPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYGPLGQG 211 (250)
Q Consensus 160 ~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~spl~~G 211 (250)
+.+.+++++.. .++.++..+-||.-.. ..+++.+.|+++|+.++.=...+.+
T Consensus 123 d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~ 176 (377)
T PRK07671 123 NLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTP 176 (377)
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 55666665532 3444555566664332 2257888899999888865555433
No 324
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=23.64 E-value=2.6e+02 Score=20.64 Aligned_cols=63 Identities=13% Similarity=0.057 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHh
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAH 168 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~ 168 (250)
+.+.+.+.+.+++.|+..+++.-++-.|-.++...+...+.+.-+++ . +-+-.|+.++|....
T Consensus 11 ~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l----~---~~~~~~~~eeL~~~~ 73 (121)
T PF01890_consen 11 GAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEEL----G---IPLRFFSAEELNAVE 73 (121)
T ss_dssp S--HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHC----T---SEEEEE-HHHHHCHH
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHh----C---CCeEEECHHHHhcCC
Confidence 56899999999999999999888888888887766544333333322 1 444456777777654
No 325
>PRK15108 biotin synthase; Provisional
Probab=23.46 E-value=5.2e+02 Score=22.88 Aligned_cols=105 Identities=12% Similarity=0.115 Sum_probs=54.7
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCcCCc-CC-CChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHH
Q 025575 35 EPEPDMIALIHHAINSGITLLDTSDIY-GP-YTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEAS 112 (250)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Y-g~-g~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~s 112 (250)
.+.+++.+..+.+.+.|++-|-..... ++ ...-+.+.+.++..+...+.++.-.+ ..+.+.+ +-
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G---------~ls~e~l-----~~ 141 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLG---------TLSESQA-----QR 141 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCC---------cCCHHHH-----HH
Confidence 366778888888888999988432221 11 11224455555543222233332222 2233333 23
Q ss_pred HHHcCCCcccEEEeecC------CCCCCHHHHHHHHHHHHHcCCcce
Q 025575 113 LKRLDIDCIDLYYQHRV------DTKIPIEVTIGELKKLVEEGKIKY 153 (250)
Q Consensus 113 L~~L~~d~iDl~~lh~p------~~~~~~~~~~~~l~~l~~~G~ir~ 153 (250)
|+..|+|++.+-+=-.| -.....++.++.++.+++.|.--.
T Consensus 142 LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~ 188 (345)
T PRK15108 142 LANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 188 (345)
T ss_pred HHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 55567665433211111 112357788999999999997433
No 326
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=23.42 E-value=4.2e+02 Score=21.79 Aligned_cols=129 Identities=22% Similarity=0.149 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHH-----HHHHHHHH
Q 025575 39 DMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYV-----RACCEASL 113 (250)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i-----~~~l~~sL 113 (250)
+..+.++.|++.|++-+=+.+.|. ....+.+.. .+-.+-++.++... ....+.- ...+++.+
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p~~~-----~~~~~~~~~-~~~~~~~vi~fp~g-------~~~~~~k~~~~~~~~ve~A~ 86 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTPGYV-----KPAAELLAG-SGVKVGLVIGFPFG-------TSTTEPKGYDQIVAEVEEAI 86 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEGGGH-----HHHHHHSTT-STSEEEEEESTTTS-------SSTHHHHTCEEEHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCEEEECHHHH-----HHHHHHhhc-cccccceEEEeCCC-------CCccccccccchHHHHHHHH
Confidence 789999999999999888888774 223333333 22355555554322 2223333 46677764
Q ss_pred HHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHc---CCcceEecCcccH---------HHHHHHhhc---CCceEEee
Q 025575 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE---GKIKYIGLSEACA---------ATIRRAHAV---HPITAVQL 178 (250)
Q Consensus 114 ~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~---G~ir~iGvSn~~~---------~~l~~~~~~---~~~~~~q~ 178 (250)
++|.|-||+++-..+..........+.+.+++++ --+..|--+-... +.+..+.+. ...+++-+
T Consensus 87 -~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt 165 (236)
T PF01791_consen 87 -RLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKT 165 (236)
T ss_dssp -HTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEE
T ss_pred -HcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEe
Confidence 4899999999887443333344555555555543 2223333222122 234444332 55677777
Q ss_pred ecC
Q 025575 179 EWS 181 (250)
Q Consensus 179 ~~n 181 (250)
.+.
T Consensus 166 ~tg 168 (236)
T PF01791_consen 166 STG 168 (236)
T ss_dssp E-S
T ss_pred cCC
Confidence 666
No 327
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=23.42 E-value=3.5e+02 Score=24.99 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=41.7
Q ss_pred CcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceE-ecCc-ccHHHHHHHhhcCCceEEeeecCcCCcCchhhhHHHHH
Q 025575 119 DCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYI-GLSE-ACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCR 196 (250)
Q Consensus 119 d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~i-GvSn-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~ 196 (250)
+.+|+..+--| .+.+.+.++++.+.| |+.+ =+|. |.....+ -...+.++++.|+
T Consensus 63 ~~~Dlavi~vp-----~~~~~~~l~e~~~~g-v~~~vi~s~gf~e~g~~------------------g~~~~~~l~~~a~ 118 (447)
T TIGR02717 63 DPVDLAVIVVP-----AKYVPQVVEECGEKG-VKGAVVITAGFKEVGEE------------------GAELEQELVEIAR 118 (447)
T ss_pred CCCCEEEEecC-----HHHHHHHHHHHHhcC-CCEEEEECCCccccCcc------------------hHHHHHHHHHHHH
Confidence 46888887765 446777888888877 4433 1111 1100000 0001257889999
Q ss_pred HhCCeEEEeccCccCcCC
Q 025575 197 ELGIGIVAYGPLGQGFLS 214 (250)
Q Consensus 197 ~~gi~via~spl~~G~L~ 214 (250)
++||.++. |-|-|++.
T Consensus 119 ~~girvlG--Pnc~G~~~ 134 (447)
T TIGR02717 119 KYGMRLLG--PNCLGIIN 134 (447)
T ss_pred HcCCEEEe--cCeeeEec
Confidence 99999885 66667666
No 328
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.40 E-value=5.3e+02 Score=22.91 Aligned_cols=81 Identities=6% Similarity=0.062 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcceEecC-------cccHHHHHHHhhc---CCceEEeeecCcCCcCch--------hh
Q 025575 129 VDTKIPIEVTIGELKKLVEEGKIKYIGLS-------EACAATIRRAHAV---HPITAVQLEWSLWSRDVE--------AE 190 (250)
Q Consensus 129 p~~~~~~~~~~~~l~~l~~~G~ir~iGvS-------n~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~--------~~ 190 (250)
+....+++++++++.++.++.. +.|-+- |-+.+++.++.+. ....++-++||++..... ..
T Consensus 223 ~~~~~~l~~ll~~l~~~~~~~~-~~V~ieyvLI~GvNDs~e~~~~L~~ll~~~~~~VnLIPynp~~~~~~~~ps~e~i~~ 301 (343)
T PRK14468 223 TAHRYSIAEIMAAVRHYQAVTG-RRVTLEYTMLKGVNDHLWQAELLADLLRGLVSHVNLIPFNPWEGSPFQSSPRAQILA 301 (343)
T ss_pred ccccCCHHHHHHHHHHHHHhcC-CeEEEEEEEeCCCcCCHHHHHHHHHHHhcCCcEEEEEcCCCCCCCCCCCCCHHHHHH
Q ss_pred hHHHHHHhCCeEEEeccCcc
Q 025575 191 IVPTCRELGIGIVAYGPLGQ 210 (250)
Q Consensus 191 ~~~~~~~~gi~via~spl~~ 210 (250)
..+..+++|+.+....+.+.
T Consensus 302 f~~~L~~~Gi~vtiR~~~g~ 321 (343)
T PRK14468 302 FADVLERRGVPVSVRWSRGR 321 (343)
T ss_pred HHHHHHHCCCeEEEeCCCCc
No 329
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=23.31 E-value=5.7e+02 Score=23.28 Aligned_cols=105 Identities=16% Similarity=0.170 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHH-----------HHcCCCcccEEEeecCCCC-----CCHHHHHHHHHHHHHcCCc-ceEecC---cccH
Q 025575 102 PAYVRACCEASL-----------KRLDIDCIDLYYQHRVDTK-----IPIEVTIGELKKLVEEGKI-KYIGLS---EACA 161 (250)
Q Consensus 102 ~~~i~~~l~~sL-----------~~L~~d~iDl~~lh~p~~~-----~~~~~~~~~l~~l~~~G~i-r~iGvS---n~~~ 161 (250)
++.+++.+++.. +.++ +|++-||.-..+ .+.++..+..++..+.=.+ --|+=| ..++
T Consensus 127 ~~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~ 203 (389)
T TIGR00381 127 PKPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDP 203 (389)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCH
Confidence 466777776655 5554 688888864321 3455677777776454333 233333 4588
Q ss_pred HHHHHHhhc--C-CceEEeeecCcCCcCchhhhHHHHHHhCCeEEEeccCccCcC
Q 025575 162 ATIRRAHAV--H-PITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFL 213 (250)
Q Consensus 162 ~~l~~~~~~--~-~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~L 213 (250)
+.++++++. . ++-++-. |.-. ..+.+.+.|+++|..|++++|..-+.+
T Consensus 204 eVLeaaLe~~~G~kpLL~SA--t~e~--Ny~~ia~lAk~yg~~Vvv~s~~Din~a 254 (389)
T TIGR00381 204 LVLEKAAEVAEGERCLLASA--NLDL--DYEKIANAAKKYGHVVLSWTIMDINMQ 254 (389)
T ss_pred HHHHHHHHHhCCCCcEEEec--Cchh--hHHHHHHHHHHhCCeEEEEcCCcHHHH
Confidence 889888776 2 3322221 1110 236899999999999999998876543
No 330
>PRK11024 colicin uptake protein TolR; Provisional
Probab=23.28 E-value=2.3e+02 Score=21.44 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecC
Q 025575 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS 157 (250)
Q Consensus 101 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS 157 (250)
+.+.+...++..+.. .-|...+=..|...+...+.+.|+.+++.|- ..+++.
T Consensus 86 ~~~~L~~~l~~~~~~----~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~-~~v~l~ 137 (141)
T PRK11024 86 PEEQVVAEAKSRFKA----NPKTVFLIGGAKDVPYDEIIKALNLLHSAGV-KSVGLM 137 (141)
T ss_pred CHHHHHHHHHHHHhh----CCCceEEEEcCCCCCHHHHHHHHHHHHHcCC-CeEEEE
Confidence 455555555554442 2344444456788899999999999999984 446654
No 331
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=23.20 E-value=2.6e+02 Score=21.42 Aligned_cols=30 Identities=13% Similarity=0.348 Sum_probs=18.5
Q ss_pred eecCcCCcCchhhhHHHHHHhCCeEEEecc
Q 025575 178 LEWSLWSRDVEAEIVPTCRELGIGIVAYGP 207 (250)
Q Consensus 178 ~~~n~~~~~~~~~~~~~~~~~gi~via~sp 207 (250)
-+|.+..+..+..+.+.|.++||.+..+..
T Consensus 96 ~~~~~~~~~rd~~v~~~l~~~~i~~~~~~~ 125 (165)
T PF00875_consen 96 EEYTPYERRRDERVRKALKKHGIKVHTFDD 125 (165)
T ss_dssp ---SHHHHHHHHHHHHHHHHTTSEEEEE--
T ss_pred cccCHHHHHHHHHHHHHHHhcceEEEEECC
Confidence 345555554456888999999999886553
No 332
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=23.19 E-value=5e+02 Score=22.53 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHh
Q 025575 108 CCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAH 168 (250)
Q Consensus 108 ~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~ 168 (250)
...+.++..+...=|+++.-...-.+ .+++.+++.+++.| ++-|++++.....+.+..
T Consensus 119 ~~~~~l~~~~l~~~DvvI~IS~SG~T--~~vi~al~~Ak~~G-a~tI~IT~~~~s~La~~a 176 (299)
T PRK05441 119 LGAADLKAINLTAKDVVVGIAASGRT--PYVIGALEYARERG-ALTIGISCNPGSPLSKEA 176 (299)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCC--HHHHHHHHHHHHCC-CeEEEEECCCCChhhHhC
Confidence 34455666666777998887654443 46999999999998 678999988766666643
No 333
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=23.14 E-value=1.8e+02 Score=23.23 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecC
Q 025575 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS 157 (250)
Q Consensus 101 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS 157 (250)
+....+.++.++- -+|++++.........+-++.|+.+..+|++|++-+.
T Consensus 65 de~~f~~~L~e~s-------n~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG 114 (173)
T PF10171_consen 65 DEQSFEDALLEAS-------NDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLG 114 (173)
T ss_pred CHHHHHHHHHHHh-------CceeccChhhcCchHHHHHHHHHHHhcCCceEEeeee
Confidence 4455555555433 4566666544444456788999999999999987544
No 334
>cd08620 PI-PLCXDc_like_1 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=23.06 E-value=4e+02 Score=22.99 Aligned_cols=19 Identities=16% Similarity=0.217 Sum_probs=13.5
Q ss_pred HHHHHHHcCCCeEeCcCCc
Q 025575 43 LIHHAINSGITLLDTSDIY 61 (250)
Q Consensus 43 ~l~~A~~~Gi~~~DtA~~Y 61 (250)
-+..=++.|||+||--..|
T Consensus 35 ~i~~QL~~GiRyfDlRv~~ 53 (281)
T cd08620 35 NVSTQLALGARYFDFRPGY 53 (281)
T ss_pred cHHHHHhcCcEEEEEEeee
Confidence 3556678999999874433
No 335
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=23.00 E-value=3.6e+02 Score=23.03 Aligned_cols=96 Identities=13% Similarity=0.090 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCCCcccEEEeecCC--CC-CCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhcCCceEEeeec
Q 025575 104 YVRACCEASLKRLDIDCIDLYYQHRVD--TK-IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEW 180 (250)
Q Consensus 104 ~i~~~l~~sL~~L~~d~iDl~~lh~p~--~~-~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~ 180 (250)
.-+..+-+.|.++|+++|++=..-.|. +. .+.++....+.. ...++..+++ -+...++.+++.. ++.+.+..
T Consensus 20 e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~---~~~~~~~~~~-~~~~dv~~A~~~g-~~~i~i~~ 94 (274)
T cd07938 20 EDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPR---RPGVRYSALV-PNLRGAERALAAG-VDEVAVFV 94 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhccc---CCCCEEEEEC-CCHHHHHHHHHcC-cCEEEEEE
Confidence 344556677999999999886332232 11 233344444433 2346666665 4667788887763 23333322
Q ss_pred CcCC--------cCc------hhhhHHHHHHhCCeEEE
Q 025575 181 SLWS--------RDV------EAEIVPTCRELGIGIVA 204 (250)
Q Consensus 181 n~~~--------~~~------~~~~~~~~~~~gi~via 204 (250)
+.-. ... ..+.+++++++|+.+..
T Consensus 95 ~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~ 132 (274)
T cd07938 95 SASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRG 132 (274)
T ss_pred ecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 2111 110 13678899999998864
No 336
>PLN02444 HMP-P synthase
Probab=22.94 E-value=3.6e+02 Score=25.97 Aligned_cols=105 Identities=12% Similarity=0.005 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCCe-EeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCcc---cCCCCCCCCCHHHHHHHHHHHHHHc
Q 025575 41 IALIHHAINSGITL-LDTSDIYGPYTNEILVGKALKGGMRERVELATKFGIS---FADGGKIRGDPAYVRACCEASLKRL 116 (250)
Q Consensus 41 ~~~l~~A~~~Gi~~-~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~---~~~~~~~~~~~~~i~~~l~~sL~~L 116 (250)
.+=+..|++.|-.. .|-+ ..| .-..+.+++-+. ..+=|.|=--+. ...+...+.+.+.+...+++..+
T Consensus 240 veK~~~A~~~GADTvMDLS-TGg---di~~iR~~Il~~--spvPVGTVPIYqA~~~~~~~~~~lt~d~~~d~ieeQae-- 311 (642)
T PLN02444 240 VYKLQWATMWGADTVMDLS-TGR---HIHETREWILRN--SPVPVGTVPIYQALEKVDGIAENLTWEVFRETLIEQAE-- 311 (642)
T ss_pred HHHHHHHHHcCCCeEeecc-CCC---CHHHHHHHHHHc--CCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHH--
Confidence 34468889999764 4544 233 455555555331 111111100000 00001135677777777777766
Q ss_pred CCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHH
Q 025575 117 DIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRR 166 (250)
Q Consensus 117 ~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~ 166 (250)
+=+|.+-||.- -+.+.++.++ + |-.|+-+-....+..
T Consensus 312 --qGVDfmTIH~G-------v~~~~v~~~~--~--R~tgIVSRGGSi~a~ 348 (642)
T PLN02444 312 --QGVDYFTIHAG-------VLLRYIPLTA--K--RMTGIVSRGGSIHAK 348 (642)
T ss_pred --hCCCEEEEChh-------hHHHHHHHHh--C--cccCceeCCcHHHHH
Confidence 45888999974 2455555554 3 556666554444433
No 337
>PLN02509 cystathionine beta-lyase
Probab=22.88 E-value=4.2e+02 Score=24.65 Aligned_cols=56 Identities=9% Similarity=0.014 Sum_probs=38.0
Q ss_pred ccHHHHHHHhhc-CCceEEeeecCcCCcCch-hhhHHHHHHhCCeEEEeccCccCcCC
Q 025575 159 ACAATIRRAHAV-HPITAVQLEWSLWSRDVE-AEIVPTCRELGIGIVAYGPLGQGFLS 214 (250)
Q Consensus 159 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~via~spl~~G~L~ 214 (250)
.+.+.+++++.. .+..++..+.|+.-...+ +++.+.|+++|+.++.=..++.|.+.
T Consensus 205 ~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~ 262 (464)
T PLN02509 205 TNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLS 262 (464)
T ss_pred CCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccC
Confidence 346677766643 344555667777554322 58999999999999987777666543
No 338
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=22.68 E-value=69 Score=24.33 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=14.8
Q ss_pred HHHHHHHHHcCCCeEeCcCCcC
Q 025575 41 IALIHHAINSGITLLDTSDIYG 62 (250)
Q Consensus 41 ~~~l~~A~~~Gi~~~DtA~~Yg 62 (250)
...+...++.|||+||---.++
T Consensus 29 ~~~i~~QL~~GiR~lDlrv~~~ 50 (146)
T PF00388_consen 29 SWSIREQLESGIRYLDLRVWDG 50 (146)
T ss_dssp SHHHHHHHHTT--EEEEEEEEE
T ss_pred hHhHHHHHhccCceEEEEEEcC
Confidence 3568899999999999654443
No 339
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=22.62 E-value=3.6e+02 Score=20.72 Aligned_cols=134 Identities=12% Similarity=0.092 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHc
Q 025575 37 EPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRL 116 (250)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L 116 (250)
++...+.++.|++.|.+.+++--.. .++..+|..-- .-.+++.|+.+
T Consensus 12 pent~~a~~~a~~~g~~~iE~Dv~~----------------tkDg~~vv~Hd-----------------i~tL~e~l~~~ 58 (189)
T cd08556 12 PENTLAAFRKALEAGADGVELDVQL----------------TKDGVLVVIHD-----------------IPTLEEVLELV 58 (189)
T ss_pred CchHHHHHHHHHHcCCCEEEEEeeE----------------cCCCCEEEEcC-----------------CCCHHHHHHhc
Confidence 4678899999999999988854322 12222222211 11244555555
Q ss_pred CCCcccE-EEeecCCCCCCHHHHHHHH-HHHHHcCCcceEecCcccHHHHHHHhhcCC-ceEEeeecC------------
Q 025575 117 DIDCIDL-YYQHRVDTKIPIEVTIGEL-KKLVEEGKIKYIGLSEACAATIRRAHAVHP-ITAVQLEWS------------ 181 (250)
Q Consensus 117 ~~d~iDl-~~lh~p~~~~~~~~~~~~l-~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~-~~~~q~~~n------------ 181 (250)
.- ++ +.+.--++.. ..+.++.+ +.+++-|.-+.+=++.|+.+.+..+.+..| +.+..+..+
T Consensus 59 ~~---~~~i~leiK~~~~-~~~~~~~l~~~i~~~~~~~~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 134 (189)
T cd08556 59 KG---GVGLNIELKEPTR-YPGLEAKVAELLREYGLEERVVVSSFDHEALRALKELDPEVPTGLLVDKPPLDPLLAELAR 134 (189)
T ss_pred cc---CcEEEEEECCCCC-chhHHHHHHHHHHHcCCcCCEEEEeCCHHHHHHHHHhCCCCcEEEEeecCcccchhhhHHH
Confidence 42 33 3333222211 12333333 333444566777777787777666654411 111111000
Q ss_pred --------cCCcCchhhhHHHHHHhCCeEEEecc
Q 025575 182 --------LWSRDVEAEIVPTCRELGIGIVAYGP 207 (250)
Q Consensus 182 --------~~~~~~~~~~~~~~~~~gi~via~sp 207 (250)
+-......++++.|+++|+.+.+|..
T Consensus 135 ~~~~~~v~~~~~~~~~~~i~~~~~~g~~v~~wtv 168 (189)
T cd08556 135 ALGADAVNPHYKLLTPELVRAAHAAGLKVYVWTV 168 (189)
T ss_pred hcCCeEEccChhhCCHHHHHHHHHcCCEEEEEcC
Confidence 00001125889999999999999864
No 340
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=22.60 E-value=5.2e+02 Score=22.52 Aligned_cols=85 Identities=8% Similarity=0.011 Sum_probs=59.5
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCc-ceEecCcccHHHHHHHhhcCCceEEeeecCcCCcCchhhhHHHHHHhC
Q 025575 121 IDLYYQHRVDTKIPIEVTIGELKKLVEEGKI-KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELG 199 (250)
Q Consensus 121 iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i-r~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~g 199 (250)
.++.++..|-+.. .++.+.+|.+.-.+ -..|=|-++...+..+++....+++|+...-.-. ..++++.|+.+|
T Consensus 192 ~~i~~iEqP~~~~----~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GG--i~~~~~~a~~~g 265 (320)
T PRK02714 192 GKIEFIEQPLPPD----QFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGS--PSRLRQFCQQHP 265 (320)
T ss_pred CCccEEECCCCcc----cHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCC--HHHHHHHHHHhC
Confidence 5777777775432 35667777765544 3556667788888888887778888887665432 247889999999
Q ss_pred CeEEEeccCccC
Q 025575 200 IGIVAYGPLGQG 211 (250)
Q Consensus 200 i~via~spl~~G 211 (250)
|.++..+.+..|
T Consensus 266 i~~~~~~~~es~ 277 (320)
T PRK02714 266 LDAVFSSVFETA 277 (320)
T ss_pred CCEEEEechhhH
Confidence 999976554444
No 341
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=22.58 E-value=3e+02 Score=24.16 Aligned_cols=55 Identities=24% Similarity=0.254 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCH-HHHHHHHHHHHHcCCcceE
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPI-EVTIGELKKLVEEGKIKYI 154 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~-~~~~~~l~~l~~~G~ir~i 154 (250)
+.-++.+++..+...++|+...+.+-+.-...+..-+ ..+-+.|++|.++| ++.|
T Consensus 203 dpY~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G-~~~V 258 (316)
T PF00762_consen 203 DPYPAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEG-VKRV 258 (316)
T ss_dssp -SHHHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT--SEE
T ss_pred CChHHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcC-CCeE
Confidence 3457788888888889998776555444323221111 24788999999999 5544
No 342
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=22.58 E-value=4.8e+02 Score=23.31 Aligned_cols=53 Identities=8% Similarity=0.034 Sum_probs=31.4
Q ss_pred cHHHHHHHhhc-CCceEEeeecCcCCcC-chhhhHHHHHHhCCeEEEeccCccCc
Q 025575 160 CAATIRRAHAV-HPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYGPLGQGF 212 (250)
Q Consensus 160 ~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~spl~~G~ 212 (250)
+.+.+++++.. .+..+++.+-||.-.. ..+++.+.|+++|+.++.=...+.+.
T Consensus 123 d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~ 177 (380)
T PRK06176 123 DLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPY 177 (380)
T ss_pred CHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccc
Confidence 56666665532 2334444555554332 22588999999999888665555443
No 343
>PRK10200 putative racemase; Provisional
Probab=22.56 E-value=4.5e+02 Score=21.76 Aligned_cols=63 Identities=19% Similarity=0.087 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCC------------CCCHHHHHHHHHHHHHcCCcceEecCcccHHHH
Q 025575 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDT------------KIPIEVTIGELKKLVEEGKIKYIGLSEACAATI 164 (250)
Q Consensus 101 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~------------~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 164 (250)
+.+..++-++..-.+.+.++++.+.+|+++- ..+.....+.++.|.+.| +..|-+...++...
T Consensus 15 T~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~ 89 (230)
T PRK10200 15 TIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKV 89 (230)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHH
Confidence 4566666677777788889999999998742 123445667777777777 68888887766543
No 344
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=22.53 E-value=2.1e+02 Score=21.41 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=30.1
Q ss_pred cHHHHHHHhhc-CCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEecc
Q 025575 160 CAATIRRAHAV-HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGP 207 (250)
Q Consensus 160 ~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~sp 207 (250)
+++.+++.++. ..+.++-+--..-.+-+-..+.+.|++.||++-.++.
T Consensus 56 t~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve~Mst 104 (127)
T COG3737 56 TPEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVEPMST 104 (127)
T ss_pred CHHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCccccccc
Confidence 45666666554 3355554443333333336899999999999887664
No 345
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=22.49 E-value=2.7e+02 Score=22.33 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=38.6
Q ss_pred HHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecC-cccHHHHHHHhhcCCceEEeeecC
Q 025575 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEWS 181 (250)
Q Consensus 114 ~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~q~~~n 181 (250)
.++|++++-+..-....+..+ .+....|.++... .+..+||- |-+.+.+.++.....++.+|+.-+
T Consensus 16 ~~~Gvd~ig~i~~~~s~R~v~-~~~a~~l~~~~~~-~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 16 AEAGADAIGFIFAPKSPRYVS-PEQAREIVAALPP-FVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred HHcCCCEEEEecCCCCCCCCC-HHHHHHHHHhCCC-CCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 357766655543322222222 3444444444433 36778875 667888888877778899998543
No 346
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=22.48 E-value=3.2e+02 Score=20.04 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=22.4
Q ss_pred chhhhHHHHHHhCCeEEEeccCccCcCC
Q 025575 187 VEAEIVPTCRELGIGIVAYGPLGQGFLS 214 (250)
Q Consensus 187 ~~~~~~~~~~~~gi~via~spl~~G~L~ 214 (250)
+.+.++++++++++.+|..+.-+.+.+.
T Consensus 91 ~~~~I~~~a~~~~~dlIV~Gs~g~~~l~ 118 (146)
T cd01989 91 VAKAIVEYVADHGITKLVMGASSDNHFS 118 (146)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCCCcee
Confidence 3468999999999999988887766543
No 347
>PRK03995 hypothetical protein; Provisional
Probab=22.45 E-value=4.7e+02 Score=22.46 Aligned_cols=64 Identities=16% Similarity=0.007 Sum_probs=32.6
Q ss_pred HHHHHHcCCCeEeCcCCcCCC-ChHHHHHHHhcCC-CCCCEEEEe-eeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCC
Q 025575 44 IHHAINSGITLLDTSDIYGPY-TNEILVGKALKGG-MRERVELAT-KFGISFADGGKIRGDPAYVRACCEASLKRLDID 119 (250)
Q Consensus 44 l~~A~~~Gi~~~DtA~~Yg~g-~sE~~lg~~l~~~-~R~~~~i~t-K~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d 119 (250)
-+.|++.++.+=...+.|.-. .++..+-+++.+. .+-+..+.- |. .+...++.+.+.|+.+|++
T Consensus 197 T~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~ks~~~~~~~~id~K~------------~k~~~r~~i~~~le~~gi~ 263 (267)
T PRK03995 197 TKLALESEYCFGHIIPKYALDHLSEEVLIQAIEKSTPEIDRIVIDWKG------------VKSEDRERIIEFLEELGIE 263 (267)
T ss_pred HHHHhhCCeeEEeEccccchhcCCHHHHHHHHHhccCCCCEEEEecCC------------CCHHHHHHHHHHHHHCCCe
Confidence 344555555555555555432 3555666666653 232333332 22 1234556667777777754
No 348
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=22.43 E-value=4.8e+02 Score=22.11 Aligned_cols=24 Identities=13% Similarity=0.219 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcC
Q 025575 36 PEPDMIALIHHAINSGITLLDTSD 59 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~ 59 (250)
+.++..++++.-.+.||..++...
T Consensus 20 s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 20 DTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEC
Confidence 557788888988899999999863
No 349
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=22.40 E-value=5.6e+02 Score=22.83 Aligned_cols=132 Identities=13% Similarity=0.040 Sum_probs=69.6
Q ss_pred hHHHHHHHhcCC----CCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCC----HHH
Q 025575 66 NEILVGKALKGG----MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP----IEV 137 (250)
Q Consensus 66 sE~~lg~~l~~~----~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~----~~~ 137 (250)
.|+.+-+++++. ..+-++|.|-..+.. --+.+..-+++.-++.+. .++.+|.+..... .+.
T Consensus 58 ~~~kL~~~i~~~~~~~~P~~i~v~~sC~~~i--------IGdD~~~v~~~~~~~~~~---~vi~v~~~gf~~~~~~G~~~ 126 (398)
T PF00148_consen 58 GEEKLREAIKEIAEKYKPKAIFVVTSCVPEI--------IGDDIEAVARELQEEYGI---PVIPVHTPGFSGSYSQGYDA 126 (398)
T ss_dssp SHHHHHHHHHHHHHHHSTSEEEEEE-HHHHH--------TTTTHHHHHHHHHHHHSS---EEEEEE--TTSSSHHHHHHH
T ss_pred chhhHHHHHHHHHhcCCCcEEEEECCCCHHH--------hCCCHHHHHHHhhcccCC---cEEEEECCCccCCccchHHH
Confidence 566666666654 456677776654321 223344444444445543 7888888766333 234
Q ss_pred HHHHHHHHH-H------cCCcceEecCccc---HHHHHHHhhcCCceEEee----------------ecCcCCcCchh-h
Q 025575 138 TIGELKKLV-E------EGKIKYIGLSEAC---AATIRRAHAVHPITAVQL----------------EWSLWSRDVEA-E 190 (250)
Q Consensus 138 ~~~~l~~l~-~------~G~ir~iGvSn~~---~~~l~~~~~~~~~~~~q~----------------~~n~~~~~~~~-~ 190 (250)
++.+|-+.. + ++.|.-||.++.. ..++.++++...+.++.+ .+|+....... .
T Consensus 127 a~~~l~~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~~~~~~~ 206 (398)
T PF00148_consen 127 ALRALAEQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAALNIVLCPEGGPY 206 (398)
T ss_dssp HHHHHHHHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSEEEESSCCHHHH
T ss_pred HHHHHHhhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcEEEEeccchhhH
Confidence 555555444 2 3677788998765 345666666655544443 23433332212 3
Q ss_pred hHHHHHHh-CCeEEE-eccC
Q 025575 191 IVPTCREL-GIGIVA-YGPL 208 (250)
Q Consensus 191 ~~~~~~~~-gi~via-~spl 208 (250)
+.++.+++ |++.+. -.|+
T Consensus 207 ~a~~L~e~~giP~~~~~~p~ 226 (398)
T PF00148_consen 207 AAEWLEERFGIPYLYFPSPY 226 (398)
T ss_dssp HHHHHHHHHT-EEEEEC-SB
T ss_pred HHHHHHHHhCCCeeeccccc
Confidence 66666664 999997 3443
No 350
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=22.38 E-value=2e+02 Score=26.73 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHH
Q 025575 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRA 167 (250)
Q Consensus 101 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~ 167 (250)
+.+...+.+.++|+.||++ .|-+ .......+..-+++++|+++|++ +...|+ .+++++.
T Consensus 49 s~~~~~~~I~e~L~wLGI~-~De~----y~QSer~~~y~~~~e~L~e~G~A-Y~C~Ct--~eel~~~ 107 (445)
T PRK12558 49 SKQEYADAIAEDLKWLGIN-WDRT----FRQSDRFDRYDEAAEKLKAAGRL-YPCYET--PEELELK 107 (445)
T ss_pred chHHHHHHHHHHHHHcCCC-CCcc----ccHHHHHHHHHHHHHHHHHCCCE-EEecCc--hHHHHHH
Confidence 4577888999999999997 3632 11122234457889999999996 555544 5555543
No 351
>PRK15456 universal stress protein UspG; Provisional
Probab=22.36 E-value=1.6e+02 Score=21.82 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=26.4
Q ss_pred eeecCcCCcCchhhhHHHHHHhCCeEEEeccCccC
Q 025575 177 QLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQG 211 (250)
Q Consensus 177 q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G 211 (250)
+++..+....+.+.++++++++++.+|..+.-+.|
T Consensus 83 ~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~ 117 (142)
T PRK15456 83 RIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPS 117 (142)
T ss_pred ceEEEEcCCChHHHHHHHHhhcCCCEEEEcCCCCC
Confidence 34444555555578999999999999999887766
No 352
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=22.34 E-value=2.7e+02 Score=21.50 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=19.4
Q ss_pred CEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCC
Q 025575 81 RVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDI 118 (250)
Q Consensus 81 ~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~ 118 (250)
+++|..|-+.. ..+.+.+++++...|+++++
T Consensus 87 DiVviar~~~~-------~~~~~~l~~~l~~LL~k~~~ 117 (145)
T PRK04820 87 DYVVVARSAAA-------KASNPQLRDAFLRLLRRAGA 117 (145)
T ss_pred CEEEEEeCCcc-------cCCHHHHHHHHHHHHHHhCc
Confidence 55555555432 45667777777777777654
No 353
>PRK13753 dihydropteroate synthase; Provisional
Probab=22.10 E-value=5.2e+02 Score=22.35 Aligned_cols=102 Identities=16% Similarity=0.108 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEe-ecCCCC-CCH----HHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhcCCc
Q 025575 100 GDPAYVRACCEASLKRLDIDCIDLYYQ-HRVDTK-IPI----EVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPI 173 (250)
Q Consensus 100 ~~~~~i~~~l~~sL~~L~~d~iDl~~l-h~p~~~-~~~----~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~ 173 (250)
.+++.+.+..++.+ .-|.|-||+=-- .+|... .+. ..+...++.+++.+. .|.|-++.++.++++++.+-
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aGa- 97 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRGV- 97 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcCC-
Confidence 35566666655544 346777777432 335432 222 234467777777653 48899999999999998743
Q ss_pred eEEeeecCcCCcCchhhhHHHHHHhCCeEEEeccCc
Q 025575 174 TAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLG 209 (250)
Q Consensus 174 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~ 209 (250)
++ -+..+-+. ...+.+.+.+.+++++.+...+
T Consensus 98 di-INDVsg~~---d~~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 98 GY-LNDIQGFP---DPALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred CE-EEeCCCCC---chHHHHHHHHcCCCEEEEecCC
Confidence 22 12223332 3578899999999999877654
No 354
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=22.06 E-value=2.2e+02 Score=21.25 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHH
Q 025575 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRA 167 (250)
Q Consensus 99 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~ 167 (250)
+.+++.+.+.+++.|+..+++.-++-.+..++...+-..+++.-+++ | +-+--|+.++|+..
T Consensus 13 ~~~~e~i~~ai~~~L~~~~l~~~si~~lasi~~K~~E~~L~~~A~~l---g----~pl~~~~~~eL~~~ 74 (126)
T PRK07027 13 GVPAEQIEAAIRAALAQRPLASADVRVVATLDLKADEAGLLALCARH---G----WPLRAFSAAQLAAS 74 (126)
T ss_pred CCCHHHHHHHHHHHHHHcCCCHHHhheeEehhhhcCCHHHHHHHHHh---C----CCeEEeCHHHHHhc
Confidence 56899999999999999999877777788777655443344333332 1 23334566776653
No 355
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=21.97 E-value=5.9e+02 Score=22.94 Aligned_cols=91 Identities=15% Similarity=0.035 Sum_probs=52.9
Q ss_pred cccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhc-CCceEEeeecCcCCcC-chhhhHHHHHH
Q 025575 120 CIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV-HPITAVQLEWSLWSRD-VEAEIVPTCRE 197 (250)
Q Consensus 120 ~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~~~~~~~~ 197 (250)
.=|.+++..|.. ..+...+..+...+.++-.-+...+.+.+++++.. .+..++..+-||.-.- ...++.+.|++
T Consensus 91 ~Gd~Il~~~~~y----~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~ 166 (388)
T PRK08861 91 PDDLIVAPHDCY----GGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKA 166 (388)
T ss_pred CCCEEEEcCCch----HHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHH
Confidence 346666654432 23444444443344344444444567777776643 4445555566664332 22589999999
Q ss_pred hCCeEEEeccCccCcCC
Q 025575 198 LGIGIVAYGPLGQGFLS 214 (250)
Q Consensus 198 ~gi~via~spl~~G~L~ 214 (250)
+|+.++.=...+.|.+.
T Consensus 167 ~gi~vIvDea~~~~~~~ 183 (388)
T PRK08861 167 VGALVAVDNTFLTPVLQ 183 (388)
T ss_pred cCCEEEEECCccccccC
Confidence 99999977776666544
No 356
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=21.85 E-value=5.6e+02 Score=23.01 Aligned_cols=88 Identities=18% Similarity=0.062 Sum_probs=47.0
Q ss_pred cEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHhhc-CCceEEeeecCcCCcC-chhhhHHHHHHhC
Q 025575 122 DLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV-HPITAVQLEWSLWSRD-VEAEIVPTCRELG 199 (250)
Q Consensus 122 Dl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~~~~~~~~~g 199 (250)
|-+++..|.. ..+...+..+...+-+.-.-+...+.+.+++++.. .++.++..+-||.-.- ..+++.+.|+++|
T Consensus 92 D~Vl~~~~~y----~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g 167 (386)
T PRK08045 92 DLLVAPHDCY----GGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAG 167 (386)
T ss_pred CEEEEcCCCc----HHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcC
Confidence 5555554432 22333444444444333222334566777766543 3344455555554321 2358999999999
Q ss_pred CeEEEeccCccCcC
Q 025575 200 IGIVAYGPLGQGFL 213 (250)
Q Consensus 200 i~via~spl~~G~L 213 (250)
+.++.=...+.+.+
T Consensus 168 ~~vivDeay~~~~~ 181 (386)
T PRK08045 168 AVSVVDNTFLSPAL 181 (386)
T ss_pred CEEEEECCCCcccc
Confidence 98886666555533
No 357
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=21.83 E-value=5.8e+02 Score=22.83 Aligned_cols=105 Identities=13% Similarity=0.044 Sum_probs=57.8
Q ss_pred cCCcCCCChHHHHHHHhcCC----CCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCC
Q 025575 58 SDIYGPYTNEILVGKALKGG----MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI 133 (250)
Q Consensus 58 A~~Yg~g~sE~~lg~~l~~~----~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~ 133 (250)
.-.|| .|..+-+++++. +.+=++|.|-..+. .--+.++.-+++.-++.+ +.++.+|.|....
T Consensus 66 d~V~G---g~~~L~~~i~~~~~~~~P~~i~v~~tC~~~--------~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g 131 (406)
T cd01967 66 DIVFG---GEKKLKKAIKEAYERFPPKAIFVYSTCPTG--------LIGDDIEAVAKEASKELG---IPVIPVNCEGFRG 131 (406)
T ss_pred ceeeC---cHHHHHHHHHHHHHhCCCCEEEEECCCchh--------hhccCHHHHHHHHHHhhC---CCEEEEeCCCeeC
Confidence 34566 477777777764 33445665554322 122334444444333443 7889999885433
Q ss_pred -C----HHHHHHHHHHHH---------HcCCcceEecCcc--cHHHHHHHhhcCCceEE
Q 025575 134 -P----IEVTIGELKKLV---------EEGKIKYIGLSEA--CAATIRRAHAVHPITAV 176 (250)
Q Consensus 134 -~----~~~~~~~l~~l~---------~~G~ir~iGvSn~--~~~~l~~~~~~~~~~~~ 176 (250)
. .+.++++|-+.. +++.|.-||..++ +..++.++++...+.++
T Consensus 132 ~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~ 190 (406)
T cd01967 132 VSQSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVN 190 (406)
T ss_pred CcccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEE
Confidence 2 334555544433 2355788887765 34677777766444443
No 358
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=21.62 E-value=1.9e+02 Score=21.15 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCCCC-CHHHHHHHHHHHHHcCCcceEecC
Q 025575 107 ACCEASLKRLDIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKIKYIGLS 157 (250)
Q Consensus 107 ~~l~~sL~~L~~d~iDl~~lh~p~~~~-~~~~~~~~l~~l~~~G~ir~iGvS 157 (250)
..+++.|+.+....+|.+++..++.-. ...+....++.|...| |+-+-++
T Consensus 52 ~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~g-i~l~~~~ 102 (137)
T cd00338 52 PGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHG-VRVVTAD 102 (137)
T ss_pred HHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCC-CEEEEec
Confidence 455556666655689999999987754 3446677777777665 4544443
No 359
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=21.60 E-value=4.5e+02 Score=21.47 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHcCCCeEeCc
Q 025575 37 EPDMIALIHHAINSGITLLDTS 58 (250)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~DtA 58 (250)
++...+.++.|++.|++.+++-
T Consensus 12 pENT~~af~~a~~~g~d~vE~D 33 (234)
T cd08570 12 PENTLLAFEKAVEAGADAIETD 33 (234)
T ss_pred CccHHHHHHHHHHhCCCEEEEE
Confidence 4678899999999999988753
No 360
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=21.56 E-value=1.3e+02 Score=28.11 Aligned_cols=8 Identities=13% Similarity=0.351 Sum_probs=4.6
Q ss_pred CCCeEeCc
Q 025575 51 GITLLDTS 58 (250)
Q Consensus 51 Gi~~~DtA 58 (250)
.|.+.||.
T Consensus 12 ~v~i~DtT 19 (468)
T PRK12581 12 QVAITETV 19 (468)
T ss_pred ceEEEECC
Confidence 45566665
No 361
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=21.54 E-value=4.4e+02 Score=26.22 Aligned_cols=82 Identities=15% Similarity=0.077 Sum_probs=51.5
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHH---------------HHHhhcCCceEEeeecCcCCcCch
Q 025575 124 YYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATI---------------RRAHAVHPITAVQLEWSLWSRDVE 188 (250)
Q Consensus 124 ~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l---------------~~~~~~~~~~~~q~~~n~~~~~~~ 188 (250)
+++|.+.+ .....+.+++++-.-+..|.-.|++--..+.. +.++..+-++++-+.++-..
T Consensus 203 Ivv~GHnp-~l~~~iv~~~ee~~l~~~i~~~G~cCt~~d~~R~~~~~~~~g~~~~qe~~i~tG~~D~~vvD~qCi~---- 277 (731)
T cd01916 203 ILVIGHNV-APGAEIMDYLEENGLEDKVEVGGICCTAIDLTRYNEKAKVVGPLSRQLKVVRSGIADVVVVDEQCIR---- 277 (731)
T ss_pred EEEECCCC-ccHHHHHHHHhccchhhCceEEEEecccchHhhhccCCCccCcHHHHHHHHHcCCCcEEEEecccCc----
Confidence 34454433 22445666666443344676677775433322 12344567787777776555
Q ss_pred hhhHHHHHHhCCeEEEeccCcc
Q 025575 189 AEIVPTCRELGIGIVAYGPLGQ 210 (250)
Q Consensus 189 ~~~~~~~~~~gi~via~spl~~ 210 (250)
..+.+.|++.|.++|+.++-.+
T Consensus 278 ~~I~eiA~kyG~g~I~tt~r~~ 299 (731)
T cd01916 278 ADILEEAQKLGIPVIATNDKIM 299 (731)
T ss_pred ccHHHHHHHhCCCEEEechhhh
Confidence 3799999999999999998765
No 362
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=21.53 E-value=5.3e+02 Score=22.22 Aligned_cols=103 Identities=17% Similarity=0.089 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcc-cHHHHHHHhhcCCceEEeee
Q 025575 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEA-CAATIRRAHAVHPITAVQLE 179 (250)
Q Consensus 101 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~q~~ 179 (250)
.++.+++.++...+. +-+.+.=+-+...+...+.++....++.+++.|.--.+=++.. +.+.+..+++...++.+
T Consensus 139 ~~~~~~~~~~~~~~~-~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~~~i--- 214 (325)
T cd01320 139 SPESAQETLELALKY-RDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGAERI--- 214 (325)
T ss_pred CHHHHHHHHHHHHhc-cCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCCccc---
Confidence 455666666655543 2222222222323333355667777788888876544444322 33445555542222211
Q ss_pred cCcCCcCchhhhHHHHHHhCCeEEEeccC
Q 025575 180 WSLWSRDVEAEIVPTCRELGIGIVAYGPL 208 (250)
Q Consensus 180 ~n~~~~~~~~~~~~~~~~~gi~via~spl 208 (250)
-|...-...++.++..++.||.+. ..|.
T Consensus 215 ~H~~~l~~~~~~~~~l~~~gi~v~-~~P~ 242 (325)
T cd01320 215 GHGIRAIEDPELVKRLAERNIPLE-VCPT 242 (325)
T ss_pred chhhccCccHHHHHHHHHcCCeEE-ECCC
Confidence 111111112468899999998876 3444
No 363
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=21.50 E-value=2.1e+02 Score=24.79 Aligned_cols=37 Identities=30% Similarity=0.378 Sum_probs=28.4
Q ss_pred CCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEeccCccC
Q 025575 171 HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQG 211 (250)
Q Consensus 171 ~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G 211 (250)
.+..++-+.||+.. .++-++|++.|+.+++--|+..-
T Consensus 215 ip~~iViNr~~~g~----s~ie~~~~e~gi~il~~IPyd~~ 251 (284)
T COG1149 215 IPTGIVINRYNLGD----SEIEEYCEEEGIPILGEIPYDKD 251 (284)
T ss_pred CceEEEEecCCCCc----hHHHHHHHHcCCCeeEECCcchh
Confidence 45567777786544 27999999999999998888543
No 364
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=21.40 E-value=5.1e+02 Score=23.10 Aligned_cols=52 Identities=10% Similarity=-0.045 Sum_probs=32.3
Q ss_pred cHHHHHHHhhc-CCceEEeeecCcCCcC-chhhhHHHHHHhCCeEEEeccCccC
Q 025575 160 CAATIRRAHAV-HPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYGPLGQG 211 (250)
Q Consensus 160 ~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~spl~~G 211 (250)
+.+.+++++.. .+..++..+.|+.-.. ..+++.+.|+++|+.++.=...+.+
T Consensus 128 d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~ 181 (380)
T TIGR01325 128 DLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATP 181 (380)
T ss_pred CHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccc
Confidence 45666665532 3344555566654332 2258999999999999965555444
No 365
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=21.30 E-value=6.7e+02 Score=23.33 Aligned_cols=107 Identities=13% Similarity=0.055 Sum_probs=56.2
Q ss_pred eCcCCcCCCChHHHHHHHhcCC----CCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCC
Q 025575 56 DTSDIYGPYTNEILVGKALKGG----MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT 131 (250)
Q Consensus 56 DtA~~Yg~g~sE~~lg~~l~~~----~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~ 131 (250)
+..-.|| .|+.|-++|.+. +.+-++|.|-..+. .--+.+..-+++.-++++ +.++.++.+..
T Consensus 96 E~dvVfG---g~~kL~~~I~ei~~~~~P~~I~V~tTC~~~--------lIGdDi~~v~~~~~~~~~---~pvi~v~t~Gf 161 (475)
T PRK14478 96 ETDVVFG---GEKKLFKAIDEIIEKYAPPAVFVYQTCVVA--------LIGDDIDAVCKRAAEKFG---IPVIPVNSPGF 161 (475)
T ss_pred cCceeeC---CHHHHHHHHHHHHHhcCCCEEEEeCCChHH--------HhccCHHHHHHHHHHhhC---CCEEEEECCCc
Confidence 3344577 566777777654 33445665554322 122233333333333443 67888888765
Q ss_pred CCC----HHHHHHHHHH-HH--------HcCCcceEecCcc--cHHHHHHHhhcCCceEE
Q 025575 132 KIP----IEVTIGELKK-LV--------EEGKIKYIGLSEA--CAATIRRAHAVHPITAV 176 (250)
Q Consensus 132 ~~~----~~~~~~~l~~-l~--------~~G~ir~iGvSn~--~~~~l~~~~~~~~~~~~ 176 (250)
... ....+++|-+ +. +.+.|.-||-.++ +.++|.++++...+.++
T Consensus 162 ~g~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~~gd~~elk~lL~~~Gl~v~ 221 (475)
T PRK14478 162 VGNKNLGNKLAGEALLDHVIGTVEPEDTTPYDINILGEYNLAGELWQVKPLLDRLGIRVV 221 (475)
T ss_pred ccchhhhHHHHHHHHHHHHhccCCccCCCCCeEEEEeCCCCCCCHHHHHHHHHHcCCeEE
Confidence 432 2333433332 32 2356888886665 34577777776444444
No 366
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=21.27 E-value=4.3e+02 Score=21.08 Aligned_cols=117 Identities=15% Similarity=0.177 Sum_probs=66.4
Q ss_pred CCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEe-ecCCCCCCHHHHHHHHHHHHHcCCcceEecCc
Q 025575 80 ERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQ-HRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE 158 (250)
Q Consensus 80 ~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~l-h~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn 158 (250)
....+.-.+.+. ....+.....+...++..+...-.+++- .............+.++.+++.|- .+++.+
T Consensus 82 ~~~~l~ini~~~-------~l~~~~~~~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~ 152 (240)
T cd01948 82 PDLRLSVNLSAR-------QLRDPDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGV--RIALDD 152 (240)
T ss_pred CCeEEEEECCHH-------HhCCcHHHHHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeC
Confidence 445555555543 2233445577788888887754233322 222222344567899999999997 466665
Q ss_pred ccH--HHHHHHhhcCCceEEeeecCcCCc--------CchhhhHHHHHHhCCeEEEec
Q 025575 159 ACA--ATIRRAHAVHPITAVQLEWSLWSR--------DVEAEIVPTCRELGIGIVAYG 206 (250)
Q Consensus 159 ~~~--~~l~~~~~~~~~~~~q~~~n~~~~--------~~~~~~~~~~~~~gi~via~s 206 (250)
+.. ..++.+ ...+|+++=+..+.... .....++..|+..|+.|++-+
T Consensus 153 ~g~~~~~~~~l-~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 209 (240)
T cd01948 153 FGTGYSSLSYL-KRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEG 209 (240)
T ss_pred CCCcHhhHHHH-HhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEe
Confidence 532 223332 22345665554433322 112478899999999999754
No 367
>PRK05939 hypothetical protein; Provisional
Probab=21.22 E-value=5e+02 Score=23.42 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=39.3
Q ss_pred HHHcC-CcceEecCcccHHHHHHHhhc-CCceEEeeecCcCCcCc-hhhhHHHHHHhCCeEEEeccCccCcC
Q 025575 145 LVEEG-KIKYIGLSEACAATIRRAHAV-HPITAVQLEWSLWSRDV-EAEIVPTCRELGIGIVAYGPLGQGFL 213 (250)
Q Consensus 145 l~~~G-~ir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~via~spl~~G~L 213 (250)
+...| .++.+-+ .+.+.+++++.. .+..++..+.|+.-.-. .+++.+.|+++|+.++.=...+.+..
T Consensus 106 l~~~G~~v~~v~~--~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~~ 175 (397)
T PRK05939 106 LRGLGVEVTMVDA--TDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWL 175 (397)
T ss_pred HHhcCCEEEEECC--CCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccccc
Confidence 44444 2344433 356777776643 33444555566544322 25899999999999987666554433
No 368
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=21.20 E-value=1.2e+02 Score=23.66 Aligned_cols=47 Identities=15% Similarity=0.108 Sum_probs=35.2
Q ss_pred CcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCcccHHHHHHHh
Q 025575 119 DCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAH 168 (250)
Q Consensus 119 d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~ 168 (250)
+.=|++++-+.... -.++.++++.+++.| ++-|++++.....+.+..
T Consensus 100 ~~~Dv~I~iS~SG~--t~~~i~~~~~ak~~G-a~vI~IT~~~~s~La~~a 146 (177)
T cd05006 100 QPGDVLIGISTSGN--SPNVLKALEAAKERG-MKTIALTGRDGGKLLELA 146 (177)
T ss_pred CCCCEEEEEeCCCC--CHHHHHHHHHHHHCC-CEEEEEeCCCCCchhhhC
Confidence 44588777665443 348999999999999 899999988766666553
No 369
>KOG0693 consensus Myo-inositol-1-phosphate synthase [Lipid transport and metabolism]
Probab=21.17 E-value=3.9e+02 Score=24.19 Aligned_cols=30 Identities=7% Similarity=0.065 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeecCCC
Q 025575 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDT 131 (250)
Q Consensus 102 ~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~ 131 (250)
.++|++.+++-.++-++|.+=+++-.+-++
T Consensus 206 le~Ir~Dir~Fke~~~ldkViVLWTANTER 235 (512)
T KOG0693|consen 206 LEQIRKDIREFKEENKLDKVIVLWTANTER 235 (512)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEecCcce
Confidence 455666666666666766655555444443
No 370
>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]
Probab=21.10 E-value=3.5e+02 Score=24.56 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=24.5
Q ss_pred hhhHHHHHHhCCeEEEeccCccCcCCCCC
Q 025575 189 AEIVPTCRELGIGIVAYGPLGQGFLSSGP 217 (250)
Q Consensus 189 ~~~~~~~~~~gi~via~spl~~G~L~~g~ 217 (250)
.++.+.|++|||.++.=..-.+|--| |+
T Consensus 295 ~kLrdi~~Kh~v~fivDEVQTGgGaT-Gk 322 (484)
T KOG1405|consen 295 RKLRDITKKHGVAFIVDEVQTGGGAT-GK 322 (484)
T ss_pred HHHHHHHHhcCeEEEeeeeecCCCcc-Cc
Confidence 58999999999999998888777777 77
No 371
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=21.03 E-value=1.5e+02 Score=25.81 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCc
Q 025575 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI 151 (250)
Q Consensus 102 ~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i 151 (250)
.+...+.+++.+++||++ .|.+.-. ........+.+.+++|+++|.+
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~t--t~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRT--TSPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeC--CCHHHHHHHHHHHHHHHHCCCE
Confidence 556778889999999986 5754221 1111234678899999999998
No 372
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=20.93 E-value=3.7e+02 Score=24.14 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=35.4
Q ss_pred cHHHHHHHhhc--CCceEEeeecCcCCcC-chhhhHHHHHHhCCeEEEeccCccCcCC
Q 025575 160 CAATIRRAHAV--HPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYGPLGQGFLS 214 (250)
Q Consensus 160 ~~~~l~~~~~~--~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~spl~~G~L~ 214 (250)
+.+.+++++.. .+..++..+.||.-.. ..+++.+.|+++|+.++.=...+.|...
T Consensus 125 d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~ 182 (385)
T PRK08574 125 STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLY 182 (385)
T ss_pred CHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccC
Confidence 46677776653 3344455566654322 1258999999999999977776666443
No 373
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=20.90 E-value=4.9e+02 Score=22.86 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHHcCCcceEe-cCcccHHHHHHHhh
Q 025575 134 PIEVTIGELKKLVEEGKIKYIG-LSEACAATIRRAHA 169 (250)
Q Consensus 134 ~~~~~~~~l~~l~~~G~ir~iG-vSn~~~~~l~~~~~ 169 (250)
..++..+.++.+.++|.++-|| .|.-++++|+.+.+
T Consensus 271 ~p~~~a~~~~~f~~~g~vnIvGGCCGTTPeHIraia~ 307 (311)
T COG0646 271 TPEYMAEALAEFAEEGGVNIVGGCCGTTPEHIRAIAE 307 (311)
T ss_pred CHHHHHHHHHHHHHhCCceeeccccCCCHHHHHHHHH
Confidence 3567889999999999999996 66789999988754
No 374
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=20.72 E-value=5.5e+02 Score=22.14 Aligned_cols=141 Identities=15% Similarity=0.172 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCC
Q 025575 39 DMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDI 118 (250)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~ 118 (250)
-..++-....++|+|..|.+..-. . ....++....+... ...+.+.+++.++...+.|++
T Consensus 20 IVa~VT~~La~~~vNI~dls~~~~---~-----------~~~~F~m~~~~~~p------~~~~~~~L~~~L~~l~~~l~l 79 (286)
T PRK13011 20 IVAAVTGFLAEHGCYITELHSFDD---R-----------LSGRFFMRVEFHSE------EGLDEDALRAGFAPIAARFGM 79 (286)
T ss_pred HHHHHHHHHHhCCCCEEEeeeeec---C-----------CCCeEEEEEEEecC------CCCCHHHHHHHHHHHHHHhCc
Confidence 345555666689999999876511 0 12233333333211 134688999999999999987
Q ss_pred CcccEEEeecCCCCC-------CHHHHHHHHHHHHHcCCc--ceEe-cCccc-HHHHHHHhhcCCceEEeeecCcCCcC-
Q 025575 119 DCIDLYYQHRVDTKI-------PIEVTIGELKKLVEEGKI--KYIG-LSEAC-AATIRRAHAVHPITAVQLEWSLWSRD- 186 (250)
Q Consensus 119 d~iDl~~lh~p~~~~-------~~~~~~~~l~~l~~~G~i--r~iG-vSn~~-~~~l~~~~~~~~~~~~q~~~n~~~~~- 186 (250)
+ .-++.+.... .-...+++|-+..+.|.+ .-.+ +||.. ...+ .+...+.+.+++.....+.
T Consensus 80 ~----i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~~~~~l---A~~~gIp~~~~~~~~~~~~~ 152 (286)
T PRK13011 80 Q----WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPL---AAWHGIPFHHFPITPDTKPQ 152 (286)
T ss_pred E----EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCccHHHH---HHHhCCCEEEeCCCcCchhh
Confidence 5 2334333321 123457788888888864 3334 36653 3333 3333444555554442222
Q ss_pred chhhhHHHHHHhCCeEEEec
Q 025575 187 VEAEIVPTCRELGIGIVAYG 206 (250)
Q Consensus 187 ~~~~~~~~~~~~gi~via~s 206 (250)
.+..++++.++.++.++.-.
T Consensus 153 ~~~~~~~~l~~~~~Dlivla 172 (286)
T PRK13011 153 QEAQVLDVVEESGAELVVLA 172 (286)
T ss_pred hHHHHHHHHHHhCcCEEEEe
Confidence 23468899999988887544
No 375
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=20.68 E-value=1.4e+02 Score=25.94 Aligned_cols=16 Identities=19% Similarity=0.439 Sum_probs=14.8
Q ss_pred hhhHHHHHHhCCeEEE
Q 025575 189 AEIVPTCRELGIGIVA 204 (250)
Q Consensus 189 ~~~~~~~~~~gi~via 204 (250)
.+++++|+++||.||.
T Consensus 75 ~elv~yA~~rgI~viP 90 (303)
T cd02742 75 KDIIEYAAARGIEVIP 90 (303)
T ss_pred HHHHHHHHHcCCEEEE
Confidence 6999999999999994
No 376
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=20.66 E-value=5.9e+02 Score=22.71 Aligned_cols=89 Identities=15% Similarity=0.083 Sum_probs=52.0
Q ss_pred CCCCEEEEeeeCcccCCC-CCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCH----HHHHHHHHHHHHcCCcc
Q 025575 78 MRERVELATKFGISFADG-GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPI----EVTIGELKKLVEEGKIK 152 (250)
Q Consensus 78 ~R~~~~i~tK~~~~~~~~-~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~----~~~~~~l~~l~~~G~ir 152 (250)
.|++|+|.---...+... ...+..+..+.+.++...++|+- -.-|-+-|...-.|+ ..+-+.++.|-++|.=.
T Consensus 224 ~r~~VVIlFSAHslPms~Vn~GDpY~~Ei~atv~~iMeeL~~--~N~y~lawQSkVGP~pWL~p~Tde~i~~lgk~g~kn 301 (395)
T KOG1321|consen 224 VRDDVVILFSAHSLPMSVVNAGDPYPAEIAATVDLIMEELKY--KNPYRLAWQSKVGPLPWLGPATDEVIEGLGKKGVKN 301 (395)
T ss_pred ccccEEEEEecCCCcHHHHhcCCCcHHHHHHHHHHHHHHhcc--CCcchhhhhcccCCccccccchHHHHHHHHhhcccc
Confidence 578887754432211000 12356789999999999999973 244444443322221 24667788888888755
Q ss_pred eEecC-cccHHHHHHHh
Q 025575 153 YIGLS-EACAATIRRAH 168 (250)
Q Consensus 153 ~iGvS-n~~~~~l~~~~ 168 (250)
-+-|- .|..++|+-+.
T Consensus 302 ll~VPIaFvSeHIETL~ 318 (395)
T KOG1321|consen 302 LLLVPIAFVSEHIETLH 318 (395)
T ss_pred eEEEeehhhhHHHHHHH
Confidence 44443 34556665544
No 377
>PRK10508 hypothetical protein; Provisional
Probab=20.59 E-value=2.5e+02 Score=24.76 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHH
Q 025575 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLV 146 (250)
Q Consensus 100 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~ 146 (250)
-+++.+.+.+.+..+++|+|.+ +++.+. .+.++.++.++-|.
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del---~~~~~~--~~~e~~~~S~~lla 327 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI---MVNGQI--FDHQARLHSFELAM 327 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE---EEECCC--CCHHHHHHHHHHHH
Confidence 4789999999999999998776 333332 34555555555444
No 378
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=20.59 E-value=94 Score=29.90 Aligned_cols=100 Identities=7% Similarity=-0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCcccE---------EEeecCCCCCCHHHHHHHHHHHHHcCCcce---EecCcccHHHHHHHhhc---
Q 025575 106 RACCEASLKRLDIDCIDL---------YYQHRVDTKIPIEVTIGELKKLVEEGKIKY---IGLSEACAATIRRAHAV--- 170 (250)
Q Consensus 106 ~~~l~~sL~~L~~d~iDl---------~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~---iGvSn~~~~~l~~~~~~--- 170 (250)
+-.+-+.|.+.|++.|++ +-...+++...+..+-+.+....-..++|. +|..++..+.+++.++.
T Consensus 23 kl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~ 102 (582)
T TIGR01108 23 MLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVE 102 (582)
T ss_pred HHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHHHHHH
Q ss_pred CCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEe
Q 025575 171 HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 205 (250)
Q Consensus 171 ~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~ 205 (250)
..++++.+-.++-....-...+++++++|..+.+.
T Consensus 103 ~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~ 137 (582)
T TIGR01108 103 NGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGT 137 (582)
T ss_pred CCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEE
No 379
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=20.47 E-value=5.9e+02 Score=22.37 Aligned_cols=111 Identities=11% Similarity=0.002 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHcCCCeEeCcCCcCCC------ChHHHH----------HHHhcC-C-CCCCEEEEeeeCcccC-CCCC
Q 025575 37 EPDMIALIHHAINSGITLLDTSDIYGPY------TNEILV----------GKALKG-G-MRERVELATKFGISFA-DGGK 97 (250)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g------~sE~~l----------g~~l~~-~-~R~~~~i~tK~~~~~~-~~~~ 97 (250)
++...++=+..+++|-+.+.|-..-++- .-|..+ .+...+ . .+++.||..-+++... ....
T Consensus 52 Pd~I~~IH~aY~eAGADiIeTNTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~~~~~ 131 (311)
T COG0646 52 PDVIEAIHRAYIEAGADIIETNTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKTLSIS 131 (311)
T ss_pred cHHHHHHHHHHHhccCcEEEecCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEeccCcCCcCCcC
Confidence 4556666666779999999997543321 022211 111111 1 1257888888887642 1122
Q ss_pred C--CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHH
Q 025575 98 I--RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVE 147 (250)
Q Consensus 98 ~--~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~ 147 (250)
+ ..+.+.++++..++.+-|--.=+|++++.-..+.......+.+.++..+
T Consensus 132 ~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~ 183 (311)
T COG0646 132 PDFAVTFDELVEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFE 183 (311)
T ss_pred CcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHH
Confidence 2 5788999999999999997677999999876443333344555555544
No 380
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.32 E-value=6.7e+02 Score=22.92 Aligned_cols=150 Identities=12% Similarity=0.071 Sum_probs=85.1
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHH--HHHHHhcCCCCCCEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHH
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEI--LVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~--~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL 113 (250)
+.++..+..+.+++.|++.|=.-- |.. .+. ..=+++++.-.+++.|..=... .++++...+ .+
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKv--g~~-~~~d~~~v~avRe~vG~~~~L~vDaN~--------~w~~~~A~~----~~ 260 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKV--GAD-LEDDIRRCRLAREVIGPDNKLMIDANQ--------RWDVPEAIE----WV 260 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeC--CCC-HHHHHHHHHHHHHhcCCCCeEEEECCC--------CCCHHHHHH----HH
Confidence 345566667777788998765321 110 111 1223344322233333332221 335544333 23
Q ss_pred HHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC---Cc-ceEecCcccHHHHHHHhhcCCceEEeeecCcCCc-Cch
Q 025575 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG---KI-KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVE 188 (250)
Q Consensus 114 ~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G---~i-r~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~ 188 (250)
++| +-+++.++..|-+.. -++.+.+|++.. .+ -..|=|.++...+.++++...++++|....-.-. ...
T Consensus 261 ~~L--~~~~l~~iEEP~~~~----d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit~~ 334 (415)
T cd03324 261 KQL--AEFKPWWIEEPTSPD----DILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVNEN 334 (415)
T ss_pred HHh--hccCCCEEECCCCCC----cHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHH
Confidence 333 234566677764432 355666776654 23 2345456788899999888888999987664432 112
Q ss_pred hhhHHHHHHhCCeEEEec
Q 025575 189 AEIVPTCRELGIGIVAYG 206 (250)
Q Consensus 189 ~~~~~~~~~~gi~via~s 206 (250)
.++.+.|+++|+.+...+
T Consensus 335 ~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 335 LAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred HHHHHHHHHcCCeEEEcC
Confidence 589999999999998763
No 381
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=20.24 E-value=1.8e+02 Score=26.89 Aligned_cols=44 Identities=27% Similarity=0.385 Sum_probs=30.4
Q ss_pred ceEEeeecCcCCcC----------chhhhHHHHHHhCCeEEEec-cCccCcCCCCC
Q 025575 173 ITAVQLEWSLWSRD----------VEAEIVPTCRELGIGIVAYG-PLGQGFLSSGP 217 (250)
Q Consensus 173 ~~~~q~~~n~~~~~----------~~~~~~~~~~~~gi~via~s-pl~~G~L~~g~ 217 (250)
+|.+|.-|++-... ...+++.+||++||.++--. .---|.+. |+
T Consensus 174 IDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTKeG~IA-GP 228 (456)
T COG1066 174 IDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTKEGAIA-GP 228 (456)
T ss_pred EeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEccccccc-Cc
Confidence 57789888876332 12489999999999987533 33456666 54
No 382
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=20.22 E-value=2.4e+02 Score=21.43 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCcCCcCCCChHHHHHHHhcCCCCCCE
Q 025575 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERV 82 (250)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lg~~l~~~~R~~~ 82 (250)
+.++..++...|++.|+.++|-...=-...++....+.++..+.+++
T Consensus 62 ~~~~L~~l~~~a~~~~i~~~~F~~~aq~~~~y~e~~~~~~~~~~~~l 108 (133)
T PF09391_consen 62 NSEQLRELRQKALEREITVVDFTDEAQSTGHYEEYRAAVAATPEEDL 108 (133)
T ss_dssp -HHHHHHHHHHHHHTT---EEEEGGGGG---HHHHHHHHTT--TTT-
T ss_pred CHHHHHHHHHHHHHCCCeEEeChHHHhhCCCHHHHHHHHhcCChhhc
Confidence 57889999999999999877643322111255556666666554544
No 383
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.15 E-value=3e+02 Score=19.15 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=26.1
Q ss_pred HHHHhhcCCceEEeeecCcCCcCchhhhHHHHHHhCCeEEEec
Q 025575 164 IRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYG 206 (250)
Q Consensus 164 l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~s 206 (250)
+...+....+.++.+ +......-..+.+.|+++|++++--.
T Consensus 42 l~~~i~~aD~VIv~t--~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 42 LPSKIKKADLVIVFT--DYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHhcCCCCEEEEEe--CCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 555554444444444 44454444689999999999988543
No 384
>PRK14865 rnpA ribonuclease P; Provisional
Probab=20.08 E-value=2.7e+02 Score=20.34 Aligned_cols=33 Identities=18% Similarity=0.145 Sum_probs=20.8
Q ss_pred CEEEEeeeCcccCCCCCCCCCHHHHHHHHHHHHHHcCCCc
Q 025575 81 RVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDC 120 (250)
Q Consensus 81 ~~~i~tK~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~ 120 (250)
+++|..|.+.. ..+.+.+.+++...|++++..|
T Consensus 83 divii~r~~~~-------~~~~~~l~~~l~~ll~~~~~~~ 115 (116)
T PRK14865 83 DYNIIAKKGAE-------QLDFQQISRELANALERLRKKY 115 (116)
T ss_pred CEEEEEeCCcc-------cCCHHHHHHHHHHHHHHHHhhc
Confidence 45555554432 4567778888888877776443
No 385
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=20.06 E-value=4.9e+02 Score=23.79 Aligned_cols=54 Identities=4% Similarity=-0.085 Sum_probs=35.2
Q ss_pred ccHHHHHHHhhc-CCceEEeeecCcCCcC-chhhhHHHHHHhCCeEEEeccCccCc
Q 025575 159 ACAATIRRAHAV-HPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYGPLGQGF 212 (250)
Q Consensus 159 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~spl~~G~ 212 (250)
.+.+.+++++.. .+..++..+.||.-.. ..+++.+.|+++|+.++.=...+.|.
T Consensus 131 ~d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~ 186 (425)
T PRK06084 131 DDIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPV 186 (425)
T ss_pred CCHHHHHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 367777777653 3444555555665432 22689999999999999766665443
No 386
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=20.03 E-value=6.1e+02 Score=22.39 Aligned_cols=40 Identities=8% Similarity=-0.020 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCCcceEecCcc-cHHHHHHHhhcCCceEEe
Q 025575 138 TIGELKKLVEEGKIKYIGLSEA-CAATIRRAHAVHPITAVQ 177 (250)
Q Consensus 138 ~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~q 177 (250)
.+...+++++.-++--+++... +++..+++++....|.+.
T Consensus 263 ~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~ 303 (337)
T PRK13523 263 QVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIF 303 (337)
T ss_pred cHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHH
Confidence 3455566666666666666664 677777777765555543
Done!