BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025576
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DO8|A Chain A, The Crystal Structure Of The Protein With Unknown Function
From Archaeoglobus Fulgidus
pdb|3DO8|B Chain B, The Crystal Structure Of The Protein With Unknown Function
From Archaeoglobus Fulgidus
Length = 148
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 215 KIILSGSFNPLHDGHLKLLEVATR 238
K+ L G+F PLH+GH KL++VA +
Sbjct: 2 KVALGGTFEPLHEGHKKLIDVAIK 25
>pdb|1COZ|A Chain A, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
Bacillus Subtilis
pdb|1COZ|B Chain B, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
Bacillus Subtilis
pdb|1N1D|A Chain A, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
pdb|1N1D|B Chain B, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
pdb|1N1D|C Chain C, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
pdb|1N1D|D Chain D, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
Length = 129
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 214 RKIILSGSFNPLHDGHLKLLEVATR 238
+K+I G+F+ LH GH+KLLE A +
Sbjct: 2 KKVITYGTFDLLHWGHIKLLERAKQ 26
>pdb|1OD6|A Chain A, The Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Thermus Thermophilus In Complex
With 4'-Phosphopantetheine
Length = 160
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 216 IILSGSFNPLHDGHLKLLEVATR 238
++ GSF+PL +GHL +++ A+R
Sbjct: 3 VVYPGSFDPLTNGHLDVIQRASR 25
>pdb|1SVC|P Chain P, Nfkb P50 Homodimer Bound To Dna
Length = 365
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 1 MTDACIRGVVEAIHASPTQAVVYIAGGASQALG 33
MT+ACIRG + P A + GG + LG
Sbjct: 157 MTEACIRGYNPGLLVHPDLAYLQAEGGGDRQLG 189
>pdb|2O61|B Chain B, Crystal Structure Of Nfkb, Irf7, Irf3 Bound To The
Interferon-B Enhancer
Length = 314
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 1 MTDACIRGVVEAIHASPTQAVVYIAGGASQALG 33
MT+ACIRG + P A + GG + LG
Sbjct: 119 MTEACIRGYNPGLLVHPDLAYLQAEGGGDRQLG 151
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 19/139 (13%)
Query: 82 YNRALKLSRPGAPVLGVGFTGALASTHPKLGDHR------FHLSTRTSDRLWVSTVTLSK 135
Y A+ ++ GA + GV + + + P +G +++ +DR + T+TL
Sbjct: 181 YEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLGN 240
Query: 136 GLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQQFSEDQELEQIINGE 195
GL+ R L A A P +N L+D + E+ S+ + E I
Sbjct: 241 GLKIRGWS-------LFPARAFVRDSPVIYNKTLSDCSS----EELLSQVENPENTI--V 287
Query: 196 ICFKVYPFLNETQVFNEER 214
IC F ++ ++ R
Sbjct: 288 ICDDNGDFSDQMRIITRAR 306
>pdb|1GZU|A Chain A, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
pdb|1GZU|B Chain B, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
pdb|1GZU|C Chain C, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
Length = 290
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 216 IILSGSFNPLHDGHLKLLEVA 236
++ GSFNP+ + HL+L E+A
Sbjct: 22 LLACGSFNPITNXHLRLFELA 42
>pdb|3MUE|A Chain A, Crystal Structure Of Pantoate-Beta-Alanine Ligase From
Salmo Typhimurium
pdb|3MUE|B Chain B, Crystal Structure Of Pantoate-Beta-Alanine Ligase From
Salmo Typhimurium
pdb|3MUE|C Chain C, Crystal Structure Of Pantoate-Beta-Alanine Ligase From
Salmo Typhimurium
pdb|3MUE|D Chain D, Crystal Structure Of Pantoate-Beta-Alanine Ligase From
Salmo Typhimurium
Length = 287
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 193 NGEICFKVYPFLNE--TQVFNEERKIILSGSFNPLHDGHLKLLEVA 236
N + + P L + ++ E +++ L + LHDGH+KL++ A
Sbjct: 2 NAMLIIETLPLLRQHIRRLRQEGKRVALVPTMGNLHDGHMKLVDEA 47
>pdb|1FJ6|A Chain A, Fructose-1,6-Bisphosphatase (Mutant Y57w) ProductZN
COMPLEX (R-State)
pdb|1FJ9|A Chain A, Fructose-1,6-Bisphosphatase (Mutant Y57w) ProductsZNAMP
COMPLEX (T- State)
pdb|1FJ9|B Chain B, Fructose-1,6-Bisphosphatase (Mutant Y57w) ProductsZNAMP
COMPLEX (T- State)
Length = 337
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 191 IINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVA 236
++NG CF + P + E + + + KI GS +++G+ K + A
Sbjct: 177 MVNGVNCFMLDPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPA 222
>pdb|2F3B|A Chain A, Mechanism Of Displacement Of A Catalytically Essential
Loop From The Active Site Of Fructose-1,6-bisphosphatase
pdb|2F3D|A Chain A, Mechanism Of Displacement Of A Catalytically Essential
Loop From The Active Site Of Fructose-1,6-Bisphosphatase
pdb|2F3H|A Chain A, Mechanism Of Displacement Of A Catalytically Essential
Loop From The Active Site Of Fructose-1,6-Bisphosphatase
pdb|2F3H|B Chain B, Mechanism Of Displacement Of A Catalytically Essential
Loop From The Active Site Of Fructose-1,6-Bisphosphatase
Length = 338
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 191 IINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVA 236
++NG CF + P + E + + + KI GS +++G+ K + A
Sbjct: 178 MVNGVNCFMLDPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPA 223
>pdb|1LEV|A Chain A, Porcine Kidney Fructose-1,6-bisphosphatase Complexed With
An Amp-site Inhibitor
pdb|1LEV|F Chain F, Porcine Kidney Fructose-1,6-bisphosphatase Complexed With
An Amp-site Inhibitor
Length = 337
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 191 IINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVA 236
++NG CF + P + E + + + KI GS +++G+ K + A
Sbjct: 177 MVNGVNCFMLDPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPA 222
>pdb|1CNQ|A Chain A, Fructose-1,6-Bisphosphatase Complexed With
Fructose-6-Phosphate And Zinc Ions
pdb|1EYI|A Chain A, Fructose-1,6-Bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate And Phosphate (R-State)
pdb|1EYJ|A Chain A, Fructose-1,6-Bisphosphatase Complex With Amp, Magnesium,
Fructose-6- Phosphate And Phosphate (T-State)
pdb|1EYJ|B Chain B, Fructose-1,6-Bisphosphatase Complex With Amp, Magnesium,
Fructose-6- Phosphate And Phosphate (T-State)
pdb|1EYK|A Chain A, Fructose-1,6-Bisphosphatase Complex With Amp, Zinc,
Fructose-6- Phosphate And Phosphate (T-State)
pdb|1EYK|B Chain B, Fructose-1,6-Bisphosphatase Complex With Amp, Zinc,
Fructose-6- Phosphate And Phosphate (T-State)
pdb|1NUW|A Chain A, Fructose-1,6-Bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate And Phosphate At Ph 9.6
pdb|1NUX|A Chain A, Fructose-1,6-Bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate, Phosphate And Inhibitory
Concentrations Of Potassium (200mm)
pdb|1NUY|A Chain A, Fructose-1,6-Bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate, And Phosphate
pdb|1NUZ|A Chain A, Fructose-1,6-Bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate And Phosphate
pdb|1NV0|A Chain A, Fructose-1,6-Bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate, Phosphate And 1 Mm Thallium
pdb|1NV1|A Chain A, Fructose-1,6-Bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate, Phosphate And Thallium (5 Mm)
pdb|1NV2|A Chain A, Fructose-1,6-Bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate, Phosphate And Thallium (20 Mm)
pdb|1NV3|A Chain A, Fructose-1,6-Bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate, Phosphate And Thallium (100 Mm)
pdb|1NV4|A Chain A, Fructose-1,6-Bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate, Phosphate, Edta And Thallium (1
Mm)
pdb|1NV5|A Chain A, Fructose-1,6-Bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate, Phosphate, Edta And Thallium (5
Mm)
pdb|1NV6|A Chain A, Fructose-1,6-bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate, Phosphate, Edta And Thallium (20
Mm)
pdb|1NV7|A Chain A, Fructose-1,6-Bisphosphatase Complex With Amp, Magnesium,
Fructose-6-Phosphate, Phosphate And Thallium (20 Mm)
pdb|1NV7|B Chain B, Fructose-1,6-Bisphosphatase Complex With Amp, Magnesium,
Fructose-6-Phosphate, Phosphate And Thallium (20 Mm)
pdb|1Q9D|A Chain A, Fructose-1,6-Bisphosphatase Complexed With A New
Allosteric Site Inhibitor (I-State)
pdb|1Q9D|B Chain B, Fructose-1,6-Bisphosphatase Complexed With A New
Allosteric Site Inhibitor (I-State)
pdb|2QVU|A Chain A, Porcine Liver Fructose-1,6-Bisphosphatase Cocrystallized
With Fru-2,6- P2 And Mg2+, I(T)-State
pdb|2QVU|B Chain B, Porcine Liver Fructose-1,6-Bisphosphatase Cocrystallized
With Fru-2,6- P2 And Mg2+, I(T)-State
pdb|2QVV|A Chain A, Porcine Liver Fructose-1,6-Bisphosphatase Cocrystallized
With Fru-2,6- P2 And Zn2+, I(T)-State
pdb|2QVV|B Chain B, Porcine Liver Fructose-1,6-Bisphosphatase Cocrystallized
With Fru-2,6- P2 And Zn2+, I(T)-State
Length = 337
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 191 IINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVA 236
++NG CF + P + E + + + KI GS +++G+ K + A
Sbjct: 177 MVNGVNCFMLDPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPA 222
>pdb|1YXI|A Chain A, R-State Amp Complex Reveals Initial Steps Of The
Quaternary Transition Of Fructose-1,6-Bisphosphatase
pdb|1YYZ|A Chain A, R-State Amp Complex Reveals Initial Steps Of The
Quaternary Transition Of Fructose-1,6-Bisphosphatase
pdb|1YZ0|A Chain A, R-State Amp Complex Reveals Initial Steps Of The
Quaternary Transition Of Fructose-1,6-Bisphosphatase
pdb|1YZ0|B Chain B, R-State Amp Complex Reveals Initial Steps Of The
Quaternary Transition Of Fructose-1,6-Bisphosphatase
Length = 337
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 191 IINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVA 236
++NG CF + P + E + + + KI GS +++G+ K + A
Sbjct: 177 MVNGVNCFMLDPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPA 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,725,265
Number of Sequences: 62578
Number of extensions: 242334
Number of successful extensions: 614
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 13
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)