BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025576
(250 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A9HC14|NADD_GLUDA Probable nicotinate-nucleotide adenylyltransferase
OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 /
DSM 5601 / PAl5) GN=nadD PE=3 SV=1
Length = 215
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 217 ILSGSFNPLHDGHLKLLEVATRN 239
+L GSFNP+HDGHL+L A R+
Sbjct: 17 VLGGSFNPVHDGHLQLARRALRH 39
>sp|O28077|COAD_ARCFU Phosphopantetheine adenylyltransferase OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=coaD PE=1 SV=1
Length = 148
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 215 KIILSGSFNPLHDGHLKLLEVATR 238
K+ L G+F PLH+GH KL++VA +
Sbjct: 2 KVALGGTFEPLHEGHKKLIDVAIK 25
>sp|Q8ZY96|COAD_PYRAE Phosphopantetheine adenylyltransferase OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=coaD PE=3 SV=1
Length = 155
Score = 34.3 bits (77), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 214 RKIILSGSFNPLHDGHLKLLEVAT 237
R ++L G+F+ LH GH+KLL AT
Sbjct: 6 RNVVLGGTFDTLHSGHVKLLATAT 29
>sp|Q6AK10|NADD_DESPS Probable nicotinate-nucleotide adenylyltransferase OS=Desulfotalea
psychrophila (strain LSv54 / DSM 12343) GN=nadD PE=3
SV=2
Length = 211
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Query: 214 RKI-ILSGSFNPLHDGHLKLLEVA 236
+KI + G+FNPLH+GHL+L E A
Sbjct: 2 KKIGLFGGTFNPLHNGHLQLAEFA 25
>sp|P27726|G3P_PSEAE Glyceraldehyde-3-phosphate dehydrogenase OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=gap PE=3 SV=3
Length = 334
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 16 SPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPNQFCSQQTAV 75
S TQ+++ GA++A+G+++ T L VP +S++ L Q+ ++ T+V
Sbjct: 202 SATQSMIPTKTGAAEAVGLVLPELAGKLTGLAVRVPVINVSLVDLTVQV-----ARDTSV 256
Query: 76 NMALLAYNRALKLSRPGAPVLG 97
+ NR L+ + G+PVLG
Sbjct: 257 D----EVNRLLREASEGSPVLG 274
>sp|Q6APL9|Y976_DESPS Uncharacterized transporter DP0976 OS=Desulfotalea psychrophila
(strain LSv54 / DSM 12343) GN=DP0976 PE=3 SV=1
Length = 541
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 84 RALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLSTRTSDRLWVSTVTLSKGL 137
R LKLS ++G+GF LA+T + FH S TS ++ +T + GL
Sbjct: 87 RGLKLSLGTVAIIGIGFLTTLATT------YLFHFSAGTSAGIFTGALTSTPGL 134
>sp|Q9H6D3|XKR8_HUMAN XK-related protein 8 OS=Homo sapiens GN=XKR8 PE=1 SV=1
Length = 395
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 69 CSQQTAVNMALLAYNRALKLSRPGAPVLGVG 99
C+ ++ ALL Y+RAL+ P P+LG+G
Sbjct: 168 CTSFLGISWALLDYHRALRTCLPSKPLLGLG 198
>sp|Q2JWZ1|NADD_SYNJA Probable nicotinate-nucleotide adenylyltransferase OS=Synechococcus
sp. (strain JA-3-3Ab) GN=nadD PE=3 SV=1
Length = 207
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 212 EERKI-ILSGSFNPLHDGHLKLLEVA 236
++R+I IL G+FNP+H GHL + E A
Sbjct: 7 QQRRIGILGGTFNPVHHGHLIMAEQA 32
>sp|Q49LS0|XKR8_PANTR XK-related protein 8 OS=Pan troglodytes GN=XKR8 PE=2 SV=1
Length = 395
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 69 CSQQTAVNMALLAYNRALKLSRPGAPVLGVG 99
C+ ++ ALL Y+RAL+ P P+LG+G
Sbjct: 168 CTSFLGISWALLDYHRALRTCLPSRPLLGLG 198
>sp|Q1IJZ0|HLDE_KORVE Bifunctional protein HldE OS=Koribacter versatilis (strain
Ellin345) GN=hldE PE=3 SV=1
Length = 486
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 211 NEERKIILSGSFNPLHDGHLKLLEVA 236
N+ER ++ +G F+ LH GH+ LLE A
Sbjct: 352 NDERIVVTNGCFDLLHVGHISLLEQA 377
>sp|A1VBE8|MURG_DESVV UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Desulfovibrio vulgaris subsp. vulgaris
(strain DP4) GN=murG PE=3 SV=1
Length = 365
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 37 SIPGATNTVLEAVVPYSRMSMIQLLGQIPNQ 67
S+PG TN VL VVP +S+ LG P Q
Sbjct: 125 SVPGVTNRVLSRVVPRVFLSLPDTLGAFPPQ 155
>sp|P57767|PAAD_THAAR Probable aromatic acid decarboxylase OS=Thauera aromatica PE=3 SV=1
Length = 194
Score = 31.2 bits (69), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 210 FNEERKIILSGSFNPLHDGHLKLLEVATRN 239
E RK++L PLH GHL+L+ AT N
Sbjct: 110 LKERRKLVLMLRETPLHLGHLRLMTQATEN 139
>sp|Q728U8|MURG_DESVH UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=murG PE=3
SV=1
Length = 365
Score = 31.2 bits (69), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 37 SIPGATNTVLEAVVPYSRMSMIQLLGQIPNQ 67
S+PG TN VL VVP +S+ LG P Q
Sbjct: 125 SVPGLTNRVLSRVVPRVFLSLPDTLGAFPPQ 155
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,512,816
Number of Sequences: 539616
Number of extensions: 3255232
Number of successful extensions: 10175
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 10162
Number of HSP's gapped (non-prelim): 17
length of query: 250
length of database: 191,569,459
effective HSP length: 115
effective length of query: 135
effective length of database: 129,513,619
effective search space: 17484338565
effective search space used: 17484338565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)