BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025577
(250 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/251 (86%), Positives = 231/251 (92%), Gaps = 6/251 (2%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAA-NATSKYAMSADWMPGEPRPPYL 59
MASNTLMSCGIATTAFPSVLSSSKSKF V + A NA+S+++MSA+WMPG+PRPPYL
Sbjct: 1 MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119
DGSAPGDFGFDPL LGEVPENLER+KESELIHCRWAMLAV ILVPEALGLGNWV
Sbjct: 61 DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPG-----ILVPEALGLGNWV 115
Query: 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFD 179
+AQEWAAVPGGQATYLG PVPWGTLPTILVIEFL+IAFVEHQRSMEKDPEKKKYPGGAFD
Sbjct: 116 KAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFD 175
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
PLG+SKDP+K +EYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI
Sbjct: 176 PLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 235
Query: 240 GDVIIPRGIVP 250
GD+IIPR I P
Sbjct: 236 GDIIIPRTISP 246
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/246 (83%), Positives = 224/246 (91%), Gaps = 8/246 (3%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPA-AANATSKYAMSADWMPGEPRPPYL 59
MASNTLMS I +AFPS+LSSSKS+F TA L NA+S+++M+ADWMPG+PRPPYL
Sbjct: 1 MASNTLMSSAI--SAFPSLLSSSKSRFATAAPLSCFGTNASSRFSMTADWMPGQPRPPYL 58
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119
DGSAPGDFGFDPLRLGEVPENLER+KESELIHCRWAMLAV ILVPEALGLGNWV
Sbjct: 59 DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPG-----ILVPEALGLGNWV 113
Query: 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFD 179
+AQEWAA+PGGQATYLG PVPWGTLPT+L IEFL+I+FVEHQRSMEKDPEKKKYPGGAFD
Sbjct: 114 KAQEWAALPGGQATYLGNPVPWGTLPTVLAIEFLAISFVEHQRSMEKDPEKKKYPGGAFD 173
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
PLG+SKDP+KF EYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI
Sbjct: 174 PLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
Query: 240 GDVIIP 245
G+V+IP
Sbjct: 234 GNVLIP 239
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Glycine max]
Length = 246
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/253 (82%), Positives = 227/253 (89%), Gaps = 10/253 (3%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPA--AANATS-KYAMSADWMPGEPRPP 57
MA+NTLMS I +AFPS+LSSSKS+F AV L + NA+S +++MSADWMPG+PRPP
Sbjct: 1 MAANTLMSSAI--SAFPSLLSSSKSRFAAAVPLSSFVVTNASSSRFSMSADWMPGQPRPP 58
Query: 58 YLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGN 117
YLDGSAPGDFGFDPLRLGEVPENLER+KESELIHCRWAMLAV ILVPEALGLGN
Sbjct: 59 YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPG-----ILVPEALGLGN 113
Query: 118 WVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA 177
WV+AQEWAAVPGGQATYLG PVPWGTLPTIL IEFL+I+FVEHQRSMEKDPEKKKYPGGA
Sbjct: 114 WVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQRSMEKDPEKKKYPGGA 173
Query: 178 FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 237
FDPLG+SKDP+ F EYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA HLADPWHN
Sbjct: 174 FDPLGYSKDPKTFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAAHLADPWHN 233
Query: 238 NIGDVIIPRGIVP 250
NIG+VIIP+ I+P
Sbjct: 234 NIGNVIIPQSILP 246
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/251 (82%), Positives = 221/251 (88%), Gaps = 7/251 (2%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLP-AAANATSKYAMSADWMPGEPRPPYL 59
MASNTLMSCGI PS LSS+KSKF A+ + A N+ S+++MSADWMPG+PRP YL
Sbjct: 1 MASNTLMSCGIPAVC-PSFLSSTKSKFAAAMPVSVGATNSMSRFSMSADWMPGQPRPSYL 59
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119
DGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAV I+VPEALGLGNWV
Sbjct: 60 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG-----IIVPEALGLGNWV 114
Query: 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFD 179
+AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKD EKKKYPGGAFD
Sbjct: 115 KAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFD 174
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
PLG+SKDP KFEE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI
Sbjct: 175 PLGYSKDPAKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
Query: 240 GDVIIPRGIVP 250
GDVIIP+GI P
Sbjct: 235 GDVIIPKGIFP 245
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/246 (82%), Positives = 223/246 (90%), Gaps = 8/246 (3%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPA-AANATSKYAMSADWMPGEPRPPYL 59
MASNTLMS I +AFPS+LSSSKS+F TA L NA+S+++M+ADWMPG+PRPPYL
Sbjct: 1 MASNTLMSSAI--SAFPSLLSSSKSRFATAAPLSCFGTNASSRFSMTADWMPGQPRPPYL 58
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119
DGSAPGDFGFDPLRLGEVPENLER+KESELIHCRWAMLAV ILVPEALGLGNWV
Sbjct: 59 DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPG-----ILVPEALGLGNWV 113
Query: 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFD 179
+AQEWAA+PGGQATYLG PVP GTLPT+L IEFL+I+FVEHQRSMEKDPEKKKYPGGAFD
Sbjct: 114 KAQEWAALPGGQATYLGNPVPRGTLPTVLAIEFLAISFVEHQRSMEKDPEKKKYPGGAFD 173
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
PLG+SKDP+KF EYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI
Sbjct: 174 PLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
Query: 240 GDVIIP 245
G+V+IP
Sbjct: 234 GNVLIP 239
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/249 (84%), Positives = 229/249 (91%), Gaps = 7/249 (2%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDG 61
A+NTLMSCGIAT AFPS+LSSSKSKF +++ LP+ N TS+ MSADW+PG+PRPPYLDG
Sbjct: 3 ATNTLMSCGIAT-AFPSLLSSSKSKFASSIPLPSV-NGTSRVTMSADWLPGQPRPPYLDG 60
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQA 121
SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV IL+PEALGLGNWV+A
Sbjct: 61 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPG-----ILIPEALGLGNWVKA 115
Query: 122 QEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPL 181
QEWAA PGGQATYLG PVPWGTLPT+L IEF++IAFVEHQRSMEKDPEKKKYPGGAFDPL
Sbjct: 116 QEWAAAPGGQATYLGQPVPWGTLPTVLAIEFVAIAFVEHQRSMEKDPEKKKYPGGAFDPL 175
Query: 182 GFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 241
GFSKDP+KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD
Sbjct: 176 GFSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 235
Query: 242 VIIPRGIVP 250
+I+PR + P
Sbjct: 236 IIVPRTLSP 244
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 244
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 212/250 (84%), Positives = 226/250 (90%), Gaps = 6/250 (2%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLD 60
MA+NTLMSCGIAT AFPS+LSSSKSKF ++V LP ++S+ MSADWMPG+PRPPYLD
Sbjct: 1 MATNTLMSCGIAT-AFPSLLSSSKSKFASSVPLPCVNGSSSRITMSADWMPGQPRPPYLD 59
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQ 120
GSAPGDFGFDPLRLGEVPENLER+KESELIHCRWAMLAV ILVPEALGLGNWV+
Sbjct: 60 GSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPG-----ILVPEALGLGNWVK 114
Query: 121 AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDP 180
AQEWAA+PGGQATYLG PVPWGTLPTILVIEFL+IAFVEHQRSMEKDPEKKKYPGGAFDP
Sbjct: 115 AQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDP 174
Query: 181 LGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 240
LG+SKDP KF EYKVKEIKNGRLALLAFVG CVQQSAYPGTGPLENLATHLADPWHNNIG
Sbjct: 175 LGYSKDPAKFHEYKVKEIKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNIG 234
Query: 241 DVIIPRGIVP 250
D+IIP P
Sbjct: 235 DIIIPTSFSP 244
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic
isoform 1 [Vitis vinifera]
gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera]
Length = 244
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/250 (83%), Positives = 224/250 (89%), Gaps = 6/250 (2%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLD 60
MAS L SCG+A A PS+LSSSKSKF T++ LP AA +++ MSADWMPG+PRPPYLD
Sbjct: 1 MASTVLRSCGVAAVA-PSLLSSSKSKFATSLPLPNAAAGSARVTMSADWMPGQPRPPYLD 59
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQ 120
GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV +LVPEALGLGNWVQ
Sbjct: 60 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPG-----VLVPEALGLGNWVQ 114
Query: 121 AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDP 180
AQEWAA+PGGQATYLG PVPWG LPTIL IEFL+IAFVEHQRSMEKD EKKKYPGGAFDP
Sbjct: 115 AQEWAAIPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDP 174
Query: 181 LGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 240
LG+SKDP KFEEYKVKEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLA+HLADPWHNNIG
Sbjct: 175 LGYSKDPVKFEEYKVKEIKNGRLAILAFVGFCVQQSAYPGTGPLENLASHLADPWHNNIG 234
Query: 241 DVIIPRGIVP 250
DVIIPR I+P
Sbjct: 235 DVIIPRSIMP 244
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/250 (84%), Positives = 227/250 (90%), Gaps = 7/250 (2%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLD 60
MA+NTLMSCGIAT AFPS+LSSSKSKF +++ LP+ N TS+ MSA+WMPG+PRPPYLD
Sbjct: 1 MATNTLMSCGIAT-AFPSLLSSSKSKFASSIPLPSV-NGTSRVTMSANWMPGQPRPPYLD 58
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQ 120
GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV ILVPEALGLGNWV+
Sbjct: 59 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPG-----ILVPEALGLGNWVK 113
Query: 121 AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDP 180
AQEWAA PGGQATYLG PVPWGTLP IL IEF++IAFVEHQRSMEKD EKKKYPGGAFDP
Sbjct: 114 AQEWAATPGGQATYLGQPVPWGTLPIILAIEFVAIAFVEHQRSMEKDTEKKKYPGGAFDP 173
Query: 181 LGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 240
LG+SKDPQKFEEYKVKEIKNGRLALLAFVG CVQQ+AYPGTGPLENLATHLADPWHNNIG
Sbjct: 174 LGYSKDPQKFEEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIG 233
Query: 241 DVIIPRGIVP 250
DV+IPR + P
Sbjct: 234 DVLIPRSVSP 243
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum
lycopersicum]
gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic;
AltName: Full=LHCI type I CAB-6A; AltName:
Full=Light-harvesting complex I 26 kDa protein; Flags:
Precursor
gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum]
Length = 246
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/251 (81%), Positives = 217/251 (86%), Gaps = 7/251 (2%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSL-PAAANATSKYAMSADWMPGEPRPPYL 59
MASNTLMSCGI PS LSS+KSKF A+ + A N S+++MSADWMPG+PRP YL
Sbjct: 1 MASNTLMSCGIPAVC-PSFLSSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYL 59
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119
DGSAPGDFGFD L LGEVP NLERYKESELIHCRWAMLAV I+VPEALGLGNWV
Sbjct: 60 DGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPG-----IIVPEALGLGNWV 114
Query: 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFD 179
+AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKD EKKKYPGGAFD
Sbjct: 115 KAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFD 174
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
PLG+SKDP KFEE KVKEIKNGRLALLA VGFCVQQSAY GTGPLENLATHLADPWHNNI
Sbjct: 175 PLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNI 234
Query: 240 GDVIIPRGIVP 250
GDVIIP+GI P
Sbjct: 235 GDVIIPKGIFP 245
>gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlorophyll a/b-binding protein
[Nicotiana tabacum]
Length = 245
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/251 (83%), Positives = 224/251 (89%), Gaps = 7/251 (2%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAA-NATSKYAMSADWMPGEPRPPYL 59
MASNTLMSCGIA + SVLSSS SKF AV + A + S+++MSA+WMPG+PRPPYL
Sbjct: 1 MASNTLMSCGIAAVSP-SVLSSSYSKFAVAVPVCVGAVSGNSRFSMSAEWMPGQPRPPYL 59
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119
DGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAV ILVPEALGLGNWV
Sbjct: 60 DGSAPGDFGFDPLGLGEVPSNLERYKESELIHCRWAMLAVPG-----ILVPEALGLGNWV 114
Query: 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFD 179
+AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFD
Sbjct: 115 KAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFD 174
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
PLG+SKDP+KFEE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI
Sbjct: 175 PLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
Query: 240 GDVIIPRGIVP 250
GDVII RGI+P
Sbjct: 235 GDVIILRGILP 245
>gi|351734432|ref|NP_001235996.1| uncharacterized protein LOC100305992 [Glycine max]
gi|255627211|gb|ACU13950.1| unknown [Glycine max]
Length = 240
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/242 (81%), Positives = 218/242 (90%), Gaps = 8/242 (3%)
Query: 12 ATTAFPSVLSSSKSKFFTAVSLPA--AANATS-KYAMSADWMPGEPRPPYLDGSAPGDFG 68
A +AFPS+LSSSKS+F TAV L + NA+S +++MSADWMPG+PRPPYLDGSAPGDFG
Sbjct: 4 AISAFPSLLSSSKSRFATAVPLSSFGVTNASSSRFSMSADWMPGQPRPPYLDGSAPGDFG 63
Query: 69 FDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVP 128
FDPLRLGEVPENLER+KESELIHC WAMLAV ILVPEALGLGNWV+AQEWAAVP
Sbjct: 64 FDPLRLGEVPENLERFKESELIHCGWAMLAVPG-----ILVPEALGLGNWVKAQEWAAVP 118
Query: 129 GGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQ 188
GGQATYLG PVPWGTLPTIL IEFL+I+FVEHQRSM KDPEKKKYPGGAFDPLG+SKDP+
Sbjct: 119 GGQATYLGNPVPWGTLPTILAIEFLAISFVEHQRSMGKDPEKKKYPGGAFDPLGYSKDPK 178
Query: 189 KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGI 248
F EYKVKE+KNGRLALLAFVGFCVQQSAYPGTGPLENLA HLADPWHNNIG++IIP+ I
Sbjct: 179 TFHEYKVKELKNGRLALLAFVGFCVQQSAYPGTGPLENLAAHLADPWHNNIGNIIIPQSI 238
Query: 249 VP 250
+P
Sbjct: 239 LP 240
>gi|297820242|ref|XP_002878004.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
gi|297323842|gb|EFH54263.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 206/246 (83%), Positives = 218/246 (88%), Gaps = 8/246 (3%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTA-VSLPAAANATSKYAMSADWMPGEPRPPYL 59
MASN+LMSCGIA +PS+LSSSKSKF +A V LP A N + M+A WMPGEPRP YL
Sbjct: 1 MASNSLMSCGIAAV-YPSLLSSSKSKFVSAGVPLPNAGN-VGRIRMAAHWMPGEPRPAYL 58
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119
DGSAPGDFGFDPL LGEVPENLERYKESELIHCRWAMLAV ILVPEALG GNWV
Sbjct: 59 DGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPG-----ILVPEALGYGNWV 113
Query: 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFD 179
+AQEWAAVPGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFD
Sbjct: 114 KAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFD 173
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
PLG+SKDP+K EE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI
Sbjct: 174 PLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
Query: 240 GDVIIP 245
GD++IP
Sbjct: 234 GDIVIP 239
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/246 (83%), Positives = 218/246 (88%), Gaps = 8/246 (3%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTA-VSLPAAANATSKYAMSADWMPGEPRPPYL 59
MASN+LMSCGIA +PS+LSSSKSKF +A V LP A N + M+A WMPGEPRP YL
Sbjct: 1 MASNSLMSCGIAAV-YPSLLSSSKSKFVSAGVPLPNAGN-VGRIRMAAHWMPGEPRPAYL 58
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119
DGSAPGDFGFDPL LGEVPENLERYKESELIHCRWAMLAV ILVPEALG GNWV
Sbjct: 59 DGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPG-----ILVPEALGYGNWV 113
Query: 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFD 179
+AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFD
Sbjct: 114 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFD 173
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
PLG+SKDP+KFEE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH NI
Sbjct: 174 PLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHKNI 233
Query: 240 GDVIIP 245
GD++IP
Sbjct: 234 GDIVIP 239
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/244 (81%), Positives = 219/244 (89%), Gaps = 9/244 (3%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLP--AAANATSKYAMSADWMPGEPRPPY 58
MA NTLMS I +AFPS+LSSSKS+F T++ LP A+ NA+S++ M++DWMPG+PRP Y
Sbjct: 1 MACNTLMSSAI--SAFPSLLSSSKSRFSTSLPLPCTASTNASSRFTMTSDWMPGQPRPSY 58
Query: 59 LDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNW 118
LDGSAPGDFGFDPLRLGEVPENLER+KESELIHCRWAMLAV ILVPEALGLGNW
Sbjct: 59 LDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPG-----ILVPEALGLGNW 113
Query: 119 VQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF 178
V+AQEWAA+PGGQATYLG PVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF
Sbjct: 114 VKAQEWAALPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF 173
Query: 179 DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
DPLG+SKDP+KF EYK+KE+KNGRLALLAFVG VQQ+AYPGTGPLENLATHLADPWHNN
Sbjct: 174 DPLGYSKDPKKFHEYKIKEVKNGRLALLAFVGIVVQQTAYPGTGPLENLATHLADPWHNN 233
Query: 239 IGDV 242
IG
Sbjct: 234 IGKC 237
>gi|15233115|ref|NP_191049.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|75220543|sp|Q01667.1|CAB6_ARATH RecName: Full=Chlorophyll a-b binding protein 6, chloroplastic;
AltName: Full=LHCI-730; AltName: Full=LHCII type III
CAB-6; AltName: Full=Light-harvesting complex protein
Lhca1; Flags: Precursor
gi|268612158|pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612176|pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612194|pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890 [Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1 AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|16207|emb|CAA39534.1| chlorophyll A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|20453135|gb|AAM19809.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130 [Arabidopsis thaliana]
gi|332645785|gb|AEE79306.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 241
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/246 (82%), Positives = 217/246 (88%), Gaps = 8/246 (3%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTA-VSLPAAANATSKYAMSADWMPGEPRPPYL 59
MASN+LMSCGIA +PS+LSSSKSKF +A V LP A N + M+A WMPGEPRP YL
Sbjct: 1 MASNSLMSCGIAAV-YPSLLSSSKSKFVSAGVPLPNAGN-VGRIRMAAHWMPGEPRPAYL 58
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119
DGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAV ILVPEALG GNWV
Sbjct: 59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG-----ILVPEALGYGNWV 113
Query: 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFD 179
+AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFD
Sbjct: 114 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFD 173
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
PLG+SKDP+K EE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI
Sbjct: 174 PLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
Query: 240 GDVIIP 245
GD++IP
Sbjct: 234 GDIVIP 239
>gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 203/246 (82%), Positives = 216/246 (87%), Gaps = 8/246 (3%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTA-VSLPAAANATSKYAMSADWMPGEPRPPYL 59
MASN+LMSCG A +PS+LSSSKSKF +A V LP A N + M+A WMPGEPRP YL
Sbjct: 1 MASNSLMSCGKAAV-YPSLLSSSKSKFVSAGVPLPNAGN-VGRIKMAAHWMPGEPRPAYL 58
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119
DGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAV ILVPEALG GNWV
Sbjct: 59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG-----ILVPEALGYGNWV 113
Query: 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFD 179
+AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFD
Sbjct: 114 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFD 173
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
PLG+SKDP+K EE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI
Sbjct: 174 PLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
Query: 240 GDVIIP 245
GD++IP
Sbjct: 234 GDIVIP 239
>gi|296086034|emb|CBI31475.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/206 (89%), Positives = 193/206 (93%), Gaps = 5/206 (2%)
Query: 45 MSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKF 104
MSADWMPG+PRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV
Sbjct: 1 MSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPG--- 57
Query: 105 FWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSM 164
+LVPEALGLGNWVQAQEWAA+PGGQATYLG PVPWG LPTIL IEFL+IAFVEHQRSM
Sbjct: 58 --VLVPEALGLGNWVQAQEWAAIPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSM 115
Query: 165 EKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
EKD EKKKYPGGAFDPLG+SKDP KFEEYKVKEIKNGRLA+LAFVGFCVQQSAYPGTGPL
Sbjct: 116 EKDTEKKKYPGGAFDPLGYSKDPVKFEEYKVKEIKNGRLAILAFVGFCVQQSAYPGTGPL 175
Query: 225 ENLATHLADPWHNNIGDVIIPRGIVP 250
ENLA+HLADPWHNNIGDVIIPR I+P
Sbjct: 176 ENLASHLADPWHNNIGDVIIPRSIMP 201
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/249 (74%), Positives = 210/249 (84%), Gaps = 8/249 (3%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDG 61
+S+ L SC + PS+L+ S S++ + + A A + + MSA+WMPG+PRP +LDG
Sbjct: 5 SSSGLRSC--SAVGVPSLLAPS-SRWSSRLPFCANATTSGRVTMSAEWMPGQPRPAHLDG 61
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQA 121
S+PGDFGFDPL L VPEN ER+KESE+ HCRWAMLAV ILVPEALGLGNWV+A
Sbjct: 62 SSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPG-----ILVPEALGLGNWVKA 116
Query: 122 QEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPL 181
QEWAAVPGGQATYLG PVPWG+LPTILVIEF++IAF EHQR+MEKDPEKKKYPGGAFDPL
Sbjct: 117 QEWAAVPGGQATYLGNPVPWGSLPTILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPL 176
Query: 182 GFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 241
GFSKDP KFEEYK+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD
Sbjct: 177 GFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 236
Query: 242 VIIPRGIVP 250
+IIPR I P
Sbjct: 237 IIIPRSISP 245
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/251 (74%), Positives = 209/251 (83%), Gaps = 12/251 (4%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATS--KYAMSADWMPGEPRPPYL 59
+S+ L SC + PS+L+ S A P ANAT+ + MSA+WMPG+PRP +L
Sbjct: 5 SSSGLRSC--SAVGVPSLLAPSSRSGRLA---PFCANATTSGRVTMSAEWMPGQPRPAHL 59
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119
DGS+PGDFGFDPL L VPEN ER+KESE+ HCRWAMLAV ILVPEALGLGNWV
Sbjct: 60 DGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPG-----ILVPEALGLGNWV 114
Query: 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFD 179
+AQEWAAVPGGQATYLG PVPWGTLPTILVIEF++IAF EHQR+MEKDPEKKKYPGGAFD
Sbjct: 115 KAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFD 174
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
PLGFSKDP KFEEYK+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLA+HLADPWHNNI
Sbjct: 175 PLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWHNNI 234
Query: 240 GDVIIPRGIVP 250
GD+IIPR I P
Sbjct: 235 GDIIIPRSISP 245
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/252 (73%), Positives = 210/252 (83%), Gaps = 13/252 (5%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATS--KYAMSADWMPGEPRPPY 58
MA++ L SC + PS+L+ S ++ LP A AT+ + MSA+WMPG+PRP +
Sbjct: 1 MATSGLRSC--SAVGVPSLLAPSSNR----SRLPVCAYATTSGRVTMSAEWMPGQPRPAH 54
Query: 59 LDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNW 118
LDGS+PGDFGFDPL L VPEN ER+KESE+ HCRWAMLAV +LVPEALGLGNW
Sbjct: 55 LDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPG-----VLVPEALGLGNW 109
Query: 119 VQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF 178
VQAQEWAA PGGQATYLG PVPWGTLPTILVIEF++IAF EHQR+MEKDPEKKKYPGGAF
Sbjct: 110 VQAQEWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAF 169
Query: 179 DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
DPLGFSKDP KFEEYK+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLA+HL+DPWHNN
Sbjct: 170 DPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWHNN 229
Query: 239 IGDVIIPRGIVP 250
IGD+IIPR I P
Sbjct: 230 IGDIIIPRTIYP 241
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/252 (73%), Positives = 209/252 (82%), Gaps = 13/252 (5%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATS--KYAMSADWMPGEPRPPY 58
MA++ L SC + PS+L+ S ++ LP A AT+ + MSA+WMPG+PRP +
Sbjct: 1 MATSGLRSC--SAVGVPSLLAPSSNR----SRLPVCAYATTSGRVTMSAEWMPGQPRPAH 54
Query: 59 LDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNW 118
LDGS+PGDFGFDPL L VPEN ER+KESE+ HCRWAMLAV +LVPEALGLGNW
Sbjct: 55 LDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPG-----VLVPEALGLGNW 109
Query: 119 VQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF 178
VQAQEWAA PGGQATYLG PVPWGTLPTILVIEF++IAF EHQR+MEKDPEKKKYPGGAF
Sbjct: 110 VQAQEWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAF 169
Query: 179 DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
DPLGFSKDP KFEEYK+KEIKNGRLA+LAFV FCVQQSAYPGTGPLENLA+HL+DPWHNN
Sbjct: 170 DPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVAFCVQQSAYPGTGPLENLASHLSDPWHNN 229
Query: 239 IGDVIIPRGIVP 250
IGD+IIPR I P
Sbjct: 230 IGDIIIPRTIYP 241
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/249 (71%), Positives = 202/249 (81%), Gaps = 7/249 (2%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDG 61
+S+ L SC + PS+L+ S + + A A + + MSA+W PG+PRP +LDG
Sbjct: 5 SSSGLRSC--SAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWFPGQPRPAHLDG 62
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQA 121
S+PGDFGFDPL LG VPEN ER+KESE+ HCRWAML V +LVPEALGLGNWV+A
Sbjct: 63 SSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPG-----VLVPEALGLGNWVKA 117
Query: 122 QEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPL 181
QEWAAVPGGQATY G PVPWG LPTIL IEFL+IAF EHQR+MEKDPEKKKYPGGAFDPL
Sbjct: 118 QEWAAVPGGQATYFGVPVPWGNLPTILAIEFLAIAFAEHQRTMEKDPEKKKYPGGAFDPL 177
Query: 182 GFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 241
GFSKDP K EEYK+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLA+HLADPWHNNIGD
Sbjct: 178 GFSKDPVKLEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWHNNIGD 237
Query: 242 VIIPRGIVP 250
V+IPR I P
Sbjct: 238 VVIPRSIYP 246
>gi|116784661|gb|ABK23427.1| unknown [Picea sitchensis]
gi|116785117|gb|ABK23601.1| unknown [Picea sitchensis]
Length = 247
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/251 (72%), Positives = 205/251 (81%), Gaps = 6/251 (2%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAV-SLPAAANATSKYAMSADWMPGEPRPPYL 59
MA+ S +A F SS+KS+FF+ SL S+ +MSA+WMPG+PRPP+L
Sbjct: 1 MATAVGCSHVVAPVVFAGAFSSAKSRFFSPTNSLSLGVCNGSRVSMSAEWMPGQPRPPHL 60
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119
DGSAPGDFGFDPLRLG VPENLERYKESELIHCRWAMLAV +L+PEALGLGNWV
Sbjct: 61 DGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPG-----VLIPEALGLGNWV 115
Query: 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFD 179
+AQ+WAA+PG QATYLG PVPWG LP IL +EFLSIAFVE QR+ E DPEK+KYPGGAFD
Sbjct: 116 EAQKWAAIPGNQATYLGAPVPWGYLPVILAVEFLSIAFVESQRNGEPDPEKRKYPGGAFD 175
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
PLGFSKDP KF+EYKVKEIKNGRLALLAFVGFCVQ SA PGTGPLENLATHL+DPWH NI
Sbjct: 176 PLGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHLSDPWHKNI 235
Query: 240 GDVIIPRGIVP 250
++IIPR ++P
Sbjct: 236 AEIIIPRSVMP 246
>gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 246
Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/250 (70%), Positives = 203/250 (81%), Gaps = 5/250 (2%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLD 60
MA+ S +A AF SS+KS+FF+ S S+ +MSA+WMPG+PRPP+LD
Sbjct: 1 MATAVGCSPAVAPVAFAGAFSSAKSRFFSPTSSLVGRRHGSRVSMSAEWMPGQPRPPHLD 60
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQ 120
GSAPGDFGFDPLRLG +PENLERYKESELIHCRWAMLAV +L+PEALGLGNWV+
Sbjct: 61 GSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPG-----MLIPEALGLGNWVE 115
Query: 121 AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDP 180
AQ+WAA+PG QATY G PVPWG LP +L +EFL+IAFVE QR+ E DPEK+KYPGGAFDP
Sbjct: 116 AQKWAAIPGSQATYFGVPVPWGYLPIVLAVEFLAIAFVESQRNGEPDPEKRKYPGGAFDP 175
Query: 181 LGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 240
LGFSKDP KF+EYKVKEIKNGRLALLAFVGFCVQ SA PGTGPLENLATHL+DPWH NI
Sbjct: 176 LGFSKDPVKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHLSDPWHRNIA 235
Query: 241 DVIIPRGIVP 250
++IIPR + P
Sbjct: 236 EIIIPRSLFP 245
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965, partial
[Zea mays]
Length = 273
Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/244 (75%), Positives = 204/244 (83%), Gaps = 12/244 (4%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATS--KYAMSADWMPGEPRPPYL 59
+S+ L SC + PS+L+ S A P ANAT+ + MSA+WMPG+PRP +L
Sbjct: 5 SSSGLRSC--SAVGVPSLLAPSSRSGRLA---PFCANATTSGRVTMSAEWMPGQPRPAHL 59
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119
DGS+PGDFGFDPL L VPEN ER+KESE+ HCRWAMLAV ILVPEALGLGNWV
Sbjct: 60 DGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPG-----ILVPEALGLGNWV 114
Query: 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFD 179
+AQEWAAVPGGQATYLG PVPWGTLPTILVIEF++IAF EHQR+MEKDPEKKKYPGGAFD
Sbjct: 115 KAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFD 174
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
PLGFSKDP KFEEYK+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLA+HLADPWHNNI
Sbjct: 175 PLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWHNNI 234
Query: 240 GDVI 243
GD+I
Sbjct: 235 GDII 238
>gi|116794024|gb|ABK26977.1| unknown [Picea sitchensis]
Length = 247
Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/251 (71%), Positives = 204/251 (81%), Gaps = 6/251 (2%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAV-SLPAAANATSKYAMSADWMPGEPRPPYL 59
MA+ S +A F SS+KS+FF+ SL S+ +MS +WMPG+PRPP+L
Sbjct: 1 MATAVGCSHVVAPVVFAGAFSSAKSRFFSPTNSLSLGVCNGSRVSMSDEWMPGQPRPPHL 60
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119
DGSAPGDFGFDPLRLG VPENLERYKESELIHCRWAMLAV +L+PEALGLGNWV
Sbjct: 61 DGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPG-----VLIPEALGLGNWV 115
Query: 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFD 179
+AQ+WAA+PG QATYLG PVPWG LP IL +EFLSIAFVE QR+ E DPEK+KYPGGAFD
Sbjct: 116 EAQKWAAIPGNQATYLGAPVPWGYLPVILAVEFLSIAFVESQRNGEPDPEKRKYPGGAFD 175
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
PLGFSKDP KF+EYKVKEIKNGRLALLAFVGFCVQ SA PGTGPLENLATHL+DPWH NI
Sbjct: 176 PLGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHLSDPWHKNI 235
Query: 240 GDVIIPRGIVP 250
++IIPR ++P
Sbjct: 236 AEIIIPRSVMP 246
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 368 bits (945), Expect = e-99, Method: Compositional matrix adjust.
Identities = 179/236 (75%), Positives = 201/236 (85%), Gaps = 7/236 (2%)
Query: 17 PSVLSSSKSKFFTAVSLPAAANATS--KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRL 74
PS+L+ S S + LP A+AT+ + MSA+WMPG+PRP +LDGS+PGDFGFDPL L
Sbjct: 19 PSLLAPSTSSSSRSGRLPFCAHATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPLGL 78
Query: 75 GEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATY 134
VPEN ER+KESE+ HCRWAMLAV +LVPEALGLGNWV+AQEWAAVPGGQATY
Sbjct: 79 ATVPENFERFKESEVYHCRWAMLAVPG-----VLVPEALGLGNWVKAQEWAAVPGGQATY 133
Query: 135 LGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYK 194
LG PVPWGTLPTIL +EF++IAF EHQR+MEKDPEKKKYPGGAFDPLGFS+DP K EEYK
Sbjct: 134 LGAPVPWGTLPTILAVEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFSRDPAKLEEYK 193
Query: 195 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP 250
+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLA HLADPWHNNIGD+IIPR I P
Sbjct: 194 LKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLAAHLADPWHNNIGDIIIPRSISP 249
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21, chloroplastic;
AltName: Full=LHCI type I CAB-1B-21; AltName:
Full=LHCI-730 chlorophyll a/b binding protein; AltName:
Full=Light-harvesting complex I 21 kDa protein; Flags:
Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 363 bits (931), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 175/247 (70%), Positives = 199/247 (80%), Gaps = 7/247 (2%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDG 61
+S+ L SC + PS+L+ S + + A A + + MSA+W PG+PRP +LDG
Sbjct: 3 SSSGLRSC--SAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWFPGQPRPAHLDG 60
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQA 121
S+PGDFGFDPL L VPEN ER+KESE+ HCRWAML V +LVPEALGLGNWV+A
Sbjct: 61 SSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPG-----VLVPEALGLGNWVKA 115
Query: 122 QEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPL 181
QEWAA+P GQATYLG PVPWG LPTIL IEFL+IAF E QR+MEKDPEKKKYPGGAFDPL
Sbjct: 116 QEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPL 175
Query: 182 GFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 241
GFSKDP KFEE K+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD
Sbjct: 176 GFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 235
Query: 242 VIIPRGI 248
++IPR I
Sbjct: 236 IVIPRNI 242
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 360 bits (923), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 172/249 (69%), Positives = 207/249 (83%), Gaps = 9/249 (3%)
Query: 5 TLMSCG--IATTAFPSVLSSSKSKFF-TAVSLPAAANAT-SKYAMSADWMPGEPRPPYLD 60
T M+C +A P++ + KSKFF +A++ P AA + S+ +MSA+W+PG+PRP YLD
Sbjct: 3 TAMACSQLVAAAVAPTLAGTQKSKFFGSAITTPGAAFSNGSRVSMSAEWLPGQPRPAYLD 62
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQ 120
GSAPGDFGFDPL LGEVP+NLER+KESELIHCRWAMLAV L+PEALGLGNWV+
Sbjct: 63 GSAPGDFGFDPLGLGEVPDNLERFKESELIHCRWAMLAVPGC-----LIPEALGLGNWVE 117
Query: 121 AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDP 180
AQ+WAA PGGQATYLGTPVPWGTLP I+ IEF++IAFVE +R EK+KYPGGAFDP
Sbjct: 118 AQQWAATPGGQATYLGTPVPWGTLPVIIAIEFVAIAFVESRRIGVPSAEKRKYPGGAFDP 177
Query: 181 LGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 240
LGFSKDP+KFEE+K+KE+KNGRLALLAF+GFC Q +AYPGTGPL+NLATHLADPWHNNI
Sbjct: 178 LGFSKDPKKFEEFKLKEVKNGRLALLAFLGFCAQAAAYPGTGPLQNLATHLADPWHNNIA 237
Query: 241 DVIIPRGIV 249
++IIPR ++
Sbjct: 238 NIIIPRSVM 246
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 357 bits (917), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 171/247 (69%), Positives = 196/247 (79%), Gaps = 7/247 (2%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDG 61
+S+ L SC + PS+L+ S + + A A + + MSA+W PG+PRP +LDG
Sbjct: 5 SSSGLRSC--SAVGVPSLLAPSSRSGRSGLPFCAFATTSGRVTMSAEWFPGQPRPAHLDG 62
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQA 121
S+PGDFGFDPL L VPEN ER+KESE+ HCRWAML V +LVPEALGLGNWV+A
Sbjct: 63 SSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPG-----VLVPEALGLGNWVKA 117
Query: 122 QEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPL 181
QEWAA+P GQATY G PVPWG LPTIL IEFL+IAF E QR+MEKDPEKKKYPGGAFDPL
Sbjct: 118 QEWAALPDGQATYFGVPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPL 177
Query: 182 GFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 241
GFSKDP KFEE K+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENL HLADPWHNNIGD
Sbjct: 178 GFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLGAHLADPWHNNIGD 237
Query: 242 VIIPRGI 248
+++PR I
Sbjct: 238 IVVPRNI 244
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 356 bits (914), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 170/201 (84%), Positives = 183/201 (91%), Gaps = 5/201 (2%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
MPG+PRP +LDGS+PGDFGFDPL L VPEN ER+KESE+ HCRWAMLAV ILV
Sbjct: 1 MPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPG-----ILV 55
Query: 110 PEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPE 169
PEALGLGNWV+AQEWAAVPGGQATYLG PVPWGTLPTILVIEF++IAF EHQR+MEKDPE
Sbjct: 56 PEALGLGNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPE 115
Query: 170 KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 229
KKKYPGGAFDPLGFSKDP KFEEYK+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLA+
Sbjct: 116 KKKYPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLAS 175
Query: 230 HLADPWHNNIGDVIIPRGIVP 250
HLADPWHNNIGD+IIPR I P
Sbjct: 176 HLADPWHNNIGDIIIPRSISP 196
>gi|116784586|gb|ABK23400.1| unknown [Picea sitchensis]
gi|148907739|gb|ABR16996.1| unknown [Picea sitchensis]
gi|224284102|gb|ACN39788.1| unknown [Picea sitchensis]
Length = 247
Score = 356 bits (914), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 175/241 (72%), Positives = 196/241 (81%), Gaps = 6/241 (2%)
Query: 11 IATTAFPSVLSSSKSKFFTAV-SLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGF 69
+A AF SS+KS+FF+ SL S+ +MSA+WMPG+PRP +LDGSAPGDFGF
Sbjct: 11 VAPVAFAGTFSSAKSRFFSPTNSLSLGVCNGSRVSMSAEWMPGQPRPAHLDGSAPGDFGF 70
Query: 70 DPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPG 129
DPL LG VPENLERYKESELIHCRWAMLAV +L+PEALGLGNWV+AQ+WAA+PG
Sbjct: 71 DPLGLGVVPENLERYKESELIHCRWAMLAVPG-----VLIPEALGLGNWVEAQKWAAIPG 125
Query: 130 GQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQK 189
GQATYLG PVPWG P IL I FL +AF E QR+ E D EK+KYPGGAFDPLGFSKDP K
Sbjct: 126 GQATYLGVPVPWGYFPIILSIFFLKMAFAESQRNGEPDLEKRKYPGGAFDPLGFSKDPAK 185
Query: 190 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIV 249
FEEYKVKEIKNGRLALLAFVGFCVQ SA PGTGPLENLATHL+DPWH NI ++IIPR I+
Sbjct: 186 FEEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHLSDPWHKNIAEIIIPRSIL 245
Query: 250 P 250
P
Sbjct: 246 P 246
>gi|149242540|pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 352 bits (904), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 172/192 (89%), Positives = 177/192 (92%), Gaps = 5/192 (2%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
MPGEPRP YLDGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAV ILV
Sbjct: 1 MPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG-----ILV 55
Query: 110 PEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPE 169
PEALG GNWV+AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPE
Sbjct: 56 PEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPE 115
Query: 170 KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 229
KKKYPGGAFDPLG+SKDP+K EE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT
Sbjct: 116 KKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 175
Query: 230 HLADPWHNNIGD 241
HLADPWHNNIGD
Sbjct: 176 HLADPWHNNIGD 187
>gi|20790|emb|CAA41405.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 207
Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 164/210 (78%), Positives = 185/210 (88%), Gaps = 5/210 (2%)
Query: 41 SKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVV 100
S+ +MSA+WMPG+PRPP+LDGSAPGDFGFDPLRLG +PENLERYKESELIHCRWAMLAV
Sbjct: 2 SRVSMSAEWMPGQPRPPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVP 61
Query: 101 SSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEH 160
+L+PEALGLGNWV+AQ+WAA+PG QATY G PVPWG LP +L +EFL+IAFVE
Sbjct: 62 G-----MLIPEALGLGNWVEAQKWAAIPGSQATYFGVPVPWGYLPIVLAVEFLAIAFVES 116
Query: 161 QRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
QR+ E DPEK+KYPGGAFDPLGFSKDP KF+EYKVKEIKNGRLALLAFVGFCVQ SA PG
Sbjct: 117 QRNGEPDPEKRKYPGGAFDPLGFSKDPVKFKEYKVKEIKNGRLALLAFVGFCVQASANPG 176
Query: 221 TGPLENLATHLADPWHNNIGDVIIPRGIVP 250
TGPLENLATHL+DPWH NI ++IIPR + P
Sbjct: 177 TGPLENLATHLSDPWHRNIAEIIIPRSLFP 206
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 169/249 (67%), Positives = 192/249 (77%), Gaps = 7/249 (2%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDG 61
+S+ L SC + PS+L+ S + + A A + + MSA+W PG+PRP +LDG
Sbjct: 28 SSSGLRSC--SAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWFPGQPRPAHLDG 85
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQA 121
S+PGDFGFDPL L VPEN ER+KESE+ HCRWAML V +LVPEALGLGNWV+A
Sbjct: 86 SSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPG-----VLVPEALGLGNWVKA 140
Query: 122 QEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPL 181
QEWAA+P GQATYLG PVPWG LPTIL IEFL+IAF E QR+MEKDPEKKKYPGGAFDPL
Sbjct: 141 QEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPL 200
Query: 182 GFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 241
GFSKDP KFEE K+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLATHLADPWHN
Sbjct: 201 GFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNTSAT 260
Query: 242 VIIPRGIVP 250
P + P
Sbjct: 261 SSSPEYLRP 269
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 347 bits (890), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 164/206 (79%), Positives = 180/206 (87%), Gaps = 5/206 (2%)
Query: 35 AAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRW 94
A A + + MSA+W PG+PRP +LDGS+PGDFGFDPL LG VPEN ER+KESE+ HCRW
Sbjct: 4 AYATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRW 63
Query: 95 AMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLS 154
AML V +LVPEALGLGNWV+AQEWAAVPGGQATY G PVPWG LPTIL IEF++
Sbjct: 64 AMLCVPG-----VLVPEALGLGNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFVA 118
Query: 155 IAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
IAF EHQR+MEKDPEKKKYPGGAFDPLGFSKDP KFEEYK+KEIKNGRLA+LAFVGFCVQ
Sbjct: 119 IAFAEHQRTMEKDPEKKKYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQ 178
Query: 215 QSAYPGTGPLENLATHLADPWHNNIG 240
QSAYPGTGPLENLA+HLADPWHNNIG
Sbjct: 179 QSAYPGTGPLENLASHLADPWHNNIG 204
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 340 bits (872), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 165/251 (65%), Positives = 202/251 (80%), Gaps = 10/251 (3%)
Query: 1 MASNTLMSCGIATTAFPSVLS-SSKSKFFTA-VSLPAAANATSKYAMSADWMPGEPRPPY 58
MA+ T+ G++ P++LS + ++KFF+ VS + + S+ +MS++WMPG+PRP Y
Sbjct: 1 MAAATMACVGLSA---PALLSGAQRTKFFSGHVSSLSTVSNGSRVSMSSEWMPGQPRPAY 57
Query: 59 LDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNW 118
LDGS+PGDFGFDPL L EVPEN RYKESELIHCRWAMLAV +L+PEALGLGNW
Sbjct: 58 LDGSSPGDFGFDPLGLAEVPENFARYKESELIHCRWAMLAVPG-----VLIPEALGLGNW 112
Query: 119 VQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF 178
V AQ+WAA PGGQATYLG PVPWGTLP IL IEFL++AFVE +R E D EK+KYPGG F
Sbjct: 113 VSAQQWAATPGGQATYLGNPVPWGTLPIILAIEFLAVAFVEAKRGEEPDHEKRKYPGGPF 172
Query: 179 DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
DPLGF+KDP+K EEYK+KE+KNGRLALLAF+GF VQ AYPGTGPLENLA+HL++PW NN
Sbjct: 173 DPLGFAKDPKKLEEYKLKELKNGRLALLAFLGFSVQAIAYPGTGPLENLASHLSNPWANN 232
Query: 239 IGDVIIPRGIV 249
I ++IIPR ++
Sbjct: 233 IANIIIPRSVL 243
>gi|225690794|gb|ACO06083.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 252
Score = 340 bits (872), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 167/249 (67%), Positives = 190/249 (76%), Gaps = 7/249 (2%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDG 61
+S+ L SC + PS+L+ S + + A A + + MSA+W PG+PRP +LDG
Sbjct: 5 SSSGLRSC--SAVGVPSLLAPSSLSGRSGLPFCAYATTSGRVTMSAEWFPGQPRPAHLDG 62
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQA 121
S+PGDFGFDPL L VPEN ER+KESE+ HCRWAML V +LVPEALGLGNWV+A
Sbjct: 63 SSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPG-----VLVPEALGLGNWVKA 117
Query: 122 QEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPL 181
QEWAA+P GQATYLG PVPWG LPTIL IEFL+IAF E QR+MEKDPEKKKYPGGAFDPL
Sbjct: 118 QEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPL 177
Query: 182 GFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 241
GFSKDP KFEE K+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLEN THLADPWHN
Sbjct: 178 GFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENPGTHLADPWHNTSAT 237
Query: 242 VIIPRGIVP 250
P + P
Sbjct: 238 SSFPEYLPP 246
>gi|187609486|gb|ACD13266.1| chlorophyll a/b binding protein precursor [Phyllostachys
iridescens]
Length = 205
Score = 335 bits (858), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 161/207 (77%), Positives = 177/207 (85%), Gaps = 6/207 (2%)
Query: 35 AAANATSKYAMS-ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCR 93
A A + + MS A+W PG+PRP +LDGS+PGDFGFDPL L VPEN ER+KESE+ HCR
Sbjct: 4 AYATTSGRVTMSSAEWFPGQPRPVHLDGSSPGDFGFDPLGLATVPENSERFKESEVYHCR 63
Query: 94 WAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFL 153
WAML V +LVPEALGLGNWV+AQEWAAVPGGQATY G PVPWG LPTIL IEFL
Sbjct: 64 WAMLCVPG-----VLVPEALGLGNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFL 118
Query: 154 SIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 213
+IAF EHQR+MEKDPEKKKYPGGAFDPLGFSKDP K EEYK+KEI+NGRLA+LAFVGFCV
Sbjct: 119 AIAFAEHQRTMEKDPEKKKYPGGAFDPLGFSKDPVKLEEYKLKEIRNGRLAMLAFVGFCV 178
Query: 214 QQSAYPGTGPLENLATHLADPWHNNIG 240
QQS YPGTGPLENLA+HLADPWHNNIG
Sbjct: 179 QQSPYPGTGPLENLASHLADPWHNNIG 205
>gi|544700|gb|AAB29485.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 221
Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 160/214 (74%), Positives = 177/214 (82%), Gaps = 5/214 (2%)
Query: 35 AAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRW 94
A A + + MSA+W PG+PRP +L GS+P PL L VPEN ER+KESE+ HCRW
Sbjct: 10 AYATTSGRVTMSAEWFPGQPRPAHLAGSSPRGLRVRPLGLATVPENFERFKESEIYHCRW 69
Query: 95 AMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLS 154
AML V +LVPEALGLGNWV+AQEWAA+P GQATYLG PVPWG LPTIL IEFL+
Sbjct: 70 AMLCVPG-----VLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLA 124
Query: 155 IAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
IAF E QR+MEKDPEKKKYPGGAFDPLGFSKDP KFEE K+KEIKNGRLA+LAFVGFCVQ
Sbjct: 125 IAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQ 184
Query: 215 QSAYPGTGPLENLATHLADPWHNNIGDVIIPRGI 248
QSAYPGTGPLENLATHLADPWHNNIGD++IPR I
Sbjct: 185 QSAYPGTGPLENLATHLADPWHNNIGDIVIPRNI 218
>gi|168041250|ref|XP_001773105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675652|gb|EDQ62145.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 241
Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 164/234 (70%), Positives = 184/234 (78%), Gaps = 11/234 (4%)
Query: 19 VLSSSKSKFF---TAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLG 75
V ++ KS FF ++VSL +N S+ M A+W+PG PRP YLDGSAPGDFGFDPL LG
Sbjct: 16 VATAQKSSFFAGSSSVSLLGCSNG-SRVCM-AEWLPGNPRPSYLDGSAPGDFGFDPLGLG 73
Query: 76 EVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYL 135
EVPENLER+KESELIH RWAMLAV +L+PEALG GNWV AQ+WAA PGGQATYL
Sbjct: 74 EVPENLERFKESELIHARWAMLAVPG-----VLIPEALGYGNWVSAQKWAATPGGQATYL 128
Query: 136 GTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKV 195
G PVPWG LP IL IEFL+IAF E QR+ E DPEK+KYPGGAFDPLGFSK EE K+
Sbjct: 129 GNPVPWGNLPVILAIEFLAIAFAESQRNGEPDPEKRKYPGGAFDPLGFSKG-ANLEELKL 187
Query: 196 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIV 249
KEIKNGRLAL+AF+GF VQ AYPGTGPLENL THLADPWHN I VIIPR ++
Sbjct: 188 KEIKNGRLALVAFLGFAVQAIAYPGTGPLENLKTHLADPWHNTIAHVIIPRSVL 241
>gi|7271945|gb|AAF44702.1|AF241524_1 chlorophyll a/b-binding protein type I [Asarina barclaiana]
Length = 169
Score = 322 bits (825), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 157/174 (90%), Positives = 162/174 (93%), Gaps = 5/174 (2%)
Query: 65 GDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEW 124
GDFGFDPL LGEVPENLERYKESELIHCRWAMLAV ILVPEALG GNWV+AQEW
Sbjct: 1 GDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPG-----ILVPEALGFGNWVKAQEW 55
Query: 125 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 184
AAVPGGQATYLG PVPWGTLPTILVIEFL+IAFVEHQRSMEKDPEK+KYPGGAFDPLG+S
Sbjct: 56 AAVPGGQATYLGNPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKRKYPGGAFDPLGYS 115
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
KDP+KFEE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN
Sbjct: 116 KDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNK 169
>gi|303324978|pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 156/175 (89%), Positives = 161/175 (92%), Gaps = 5/175 (2%)
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQA 121
SAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAV ILVPEALG GNWV+A
Sbjct: 1 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG-----ILVPEALGYGNWVKA 55
Query: 122 QEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPL 181
QEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPL
Sbjct: 56 QEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPL 115
Query: 182 GFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 236
G+SKDP+K EE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH
Sbjct: 116 GYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 170
>gi|168052965|ref|XP_001778909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669663|gb|EDQ56245.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 148/203 (72%), Positives = 169/203 (83%), Gaps = 6/203 (2%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFW 106
A+W+PG PRP YLDGSAPGDFGFDPL LGEVPENLER+KESELIH RWAMLAV
Sbjct: 2 AEWLPGNPRPSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPG----- 56
Query: 107 ILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK 166
+L+PEALG GNWV AQ+WAA PGGQATYLG PVPWGTLP IL +EF++IAF E QR+ E
Sbjct: 57 VLIPEALGYGNWVSAQKWAATPGGQATYLGNPVPWGTLPVILAVEFIAIAFAESQRNGES 116
Query: 167 DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
DPEK+KYPGGAFDP+GFSK EE K+KEIKNGRLAL+AF+GF +Q AYPGTGPLEN
Sbjct: 117 DPEKRKYPGGAFDPMGFSKG-ANLEELKLKEIKNGRLALVAFLGFAIQAIAYPGTGPLEN 175
Query: 227 LATHLADPWHNNIGDVIIPRGIV 249
L THLADPWHN I +++IPR ++
Sbjct: 176 LKTHLADPWHNTIANILIPRSVL 198
>gi|168041643|ref|XP_001773300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675342|gb|EDQ61838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 149/203 (73%), Positives = 167/203 (82%), Gaps = 6/203 (2%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFW 106
A+W+PG PRP YLDGSAPGDFGFDPL LGEVPENLER+KESELIH RWAMLA+
Sbjct: 2 AEWLPGNPRPSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAIPG----- 56
Query: 107 ILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK 166
+L+PEALG GNWV AQ+WAA PGGQATYLG PVPWG LP IL +EF++IAFVE QR+ E
Sbjct: 57 VLIPEALGYGNWVSAQKWAATPGGQATYLGNPVPWGNLPIILAVEFIAIAFVESQRNGES 116
Query: 167 DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
DPEK+KYPGG FDPLGFSK EE K+KEIKNGRLAL+AF+GF VQ AYPGTGPLEN
Sbjct: 117 DPEKRKYPGGPFDPLGFSKG-ANLEELKLKEIKNGRLALVAFLGFVVQAVAYPGTGPLEN 175
Query: 227 LATHLADPWHNNIGDVIIPRGIV 249
L THLADPWHN I V+IPR ++
Sbjct: 176 LKTHLADPWHNTIAHVLIPRSVL 198
>gi|30694146|ref|NP_850705.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645784|gb|AEE79305.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 207
Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 173/246 (70%), Positives = 184/246 (74%), Gaps = 42/246 (17%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTA-VSLPAAANATSKYAMSADWMPGEPRPPYL 59
MASN+LMSCGIA +PS+LSSSKSKF +A V LP A N + M+A WMPGEPRP YL
Sbjct: 1 MASNSLMSCGIAAV-YPSLLSSSKSKFVSAGVPLPNAGN-VGRIRMAAHWMPGEPRPAYL 58
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119
DGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAV ILVPEALG GNWV
Sbjct: 59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG-----ILVPEALGYGNWV 113
Query: 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFD 179
+AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAF
Sbjct: 114 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAF---------------------- 151
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
E KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI
Sbjct: 152 ------------ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 199
Query: 240 GDVIIP 245
GD++IP
Sbjct: 200 GDIVIP 205
>gi|145332845|ref|NP_001078288.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645787|gb|AEE79308.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 213
Score = 303 bits (776), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 162/203 (79%), Positives = 174/203 (85%), Gaps = 8/203 (3%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTA-VSLPAAANATSKYAMSADWMPGEPRPPYL 59
MASN+LMSCGIA +PS+LSSSKSKF +A V LP A N + M+A WMPGEPRP YL
Sbjct: 1 MASNSLMSCGIAAV-YPSLLSSSKSKFVSAGVPLPNAGN-VGRIRMAAHWMPGEPRPAYL 58
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119
DGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAV ILVPEALG GNWV
Sbjct: 59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG-----ILVPEALGYGNWV 113
Query: 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFD 179
+AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFD
Sbjct: 114 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFD 173
Query: 180 PLGFSKDPQKFEEYKVKEIKNGR 202
PLG+SKDP+K EE KVKEIKNG+
Sbjct: 174 PLGYSKDPKKLEELKVKEIKNGK 196
>gi|222424528|dbj|BAH20219.1| AT3G54890 [Arabidopsis thaliana]
Length = 159
Score = 297 bits (760), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 143/162 (88%), Positives = 150/162 (92%), Gaps = 5/162 (3%)
Query: 84 YKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGT 143
YKESELIHCRWAMLAV ILVPEALG GNWV+AQEWAA+PGGQATYLG PVPWGT
Sbjct: 1 YKESELIHCRWAMLAVPG-----ILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGT 55
Query: 144 LPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRL 203
LPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLG+SKDP+K EE KVKEIKNGRL
Sbjct: 56 LPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRL 115
Query: 204 ALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 245
ALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD++IP
Sbjct: 116 ALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 157
>gi|413935744|gb|AFW70295.1| hypothetical protein ZEAMMB73_802965 [Zea mays]
Length = 150
Score = 280 bits (715), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 131/144 (90%), Positives = 139/144 (96%)
Query: 107 ILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK 166
ILVPEALGLGNWV+AQEWAAVPGGQATYLG PVPWGTLPTILVIEF++IAF EHQR+MEK
Sbjct: 7 ILVPEALGLGNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQRTMEK 66
Query: 167 DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
DPEKKKYPGGAFDPLGFSKDP KFEEYK+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLEN
Sbjct: 67 DPEKKKYPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLEN 126
Query: 227 LATHLADPWHNNIGDVIIPRGIVP 250
LA+HLADPWHNNIGD+IIPR I P
Sbjct: 127 LASHLADPWHNNIGDIIIPRSISP 150
>gi|388506626|gb|AFK41379.1| unknown [Lotus japonicus]
Length = 147
Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 127/139 (91%), Positives = 136/139 (97%)
Query: 107 ILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK 166
ILVPEALGLGNWV+AQEWAA+PGGQATYLG PVPWGTLPT+L IEFL+I+FVEHQRSMEK
Sbjct: 7 ILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGTLPTVLAIEFLAISFVEHQRSMEK 66
Query: 167 DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
DPEKKKYPGGAFDPLG+SKDP+KF EYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN
Sbjct: 67 DPEKKKYPGGAFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 126
Query: 227 LATHLADPWHNNIGDVIIP 245
LATHLADPWHNNIG+V+IP
Sbjct: 127 LATHLADPWHNNIGNVLIP 145
>gi|33772151|gb|AAQ54512.1| chlorophyll a/b-binding protein type I [Malus x domestica]
Length = 147
Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 131/152 (86%), Positives = 139/152 (91%), Gaps = 7/152 (4%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFT-AVSLPA-AANATSKYAMSADWMPGEPRPPY 58
MASNTLMSCGIATTAFPSVLSSSKSKF T AV LP+ ANA+S+++MSA+WMPGEPRPPY
Sbjct: 1 MASNTLMSCGIATTAFPSVLSSSKSKFATSAVQLPSIGANASSRFSMSAEWMPGEPRPPY 60
Query: 59 LDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNW 118
LDGSAPGDFGFDPLRLGEVPENLER+KESELIHCRWAMLAV ILVPEALGLGNW
Sbjct: 61 LDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPG-----ILVPEALGLGNW 115
Query: 119 VQAQEWAAVPGGQATYLGTPVPWGTLPTILVI 150
V+AQEWAAVPGGQATYLG PVPWGTLPTILVI
Sbjct: 116 VKAQEWAAVPGGQATYLGNPVPWGTLPTILVI 147
>gi|110224748|emb|CAL07974.1| chlorophyll a/b-binding protein, photosystem I [Platanus x
acerifolia]
Length = 167
Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/173 (77%), Positives = 147/173 (84%), Gaps = 7/173 (4%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLP-AAANATSKYAMSADWMPGEPRPPYL 59
MAS L SCG+A FPS+LSSSKSKF TAV+LP A +NA++++ MSADWMPG+PRPPYL
Sbjct: 1 MASTALRSCGVAAV-FPSLLSSSKSKFATAVALPGACSNASTRFTMSADWMPGQPRPPYL 59
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119
DGSAPGDFGFDPL LG VPENLER+KESELIHCRWAMLAV ILVPEALGLGNWV
Sbjct: 60 DGSAPGDFGFDPLLLGAVPENLERFKESELIHCRWAMLAVPG-----ILVPEALGLGNWV 114
Query: 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK 172
+AQEWAAVPGGQATYLG PVPWG LPTILVIEFL+IAFVEHQ + PEKKK
Sbjct: 115 KAQEWAAVPGGQATYLGNPVPWGYLPTILVIEFLAIAFVEHQSEHGERPEKKK 167
>gi|384247026|gb|EIE20514.1| light harvesting complex protein I-20 [Coccomyxa subellipsoidea
C-169]
Length = 229
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/210 (55%), Positives = 139/210 (66%), Gaps = 10/210 (4%)
Query: 30 AVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESEL 89
A LP + N + + +W+PG P YLDG PG FGFDP LG P NL+R++E+EL
Sbjct: 19 ATKLPKS-NGSRVVMKAGNWLPGSDTPAYLDG-LPGSFGFDPFGLGSTPANLQRFQEAEL 76
Query: 90 IHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILV 149
+H RWAM V + L E LG G+W QA WA V GG TYLG PVP+ L T+L
Sbjct: 77 VHSRWAMAGVAGA-----LGAELLGQGDWYQAPLWA-VNGGAPTYLGIPVPF-NLSTLLA 129
Query: 150 IEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFV 209
IEF++IA E QR+ E D EK+KYPGGAFDPLGFSKD + EE K+KE+KNGRLA+LAFV
Sbjct: 130 IEFVAIAGAEAQRNAEPDAEKRKYPGGAFDPLGFSKDSKVLEENKLKELKNGRLAMLAFV 189
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GF Q +A G GPLE L HLADPW N
Sbjct: 190 GFIAQHAAT-GKGPLEALKLHLADPWGANF 218
>gi|30694148|ref|NP_850706.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645786|gb|AEE79307.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 164
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 120/165 (72%), Positives = 134/165 (81%), Gaps = 9/165 (5%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTA-VSLPAAANATSKYAMSADWMPGEPRPPYL 59
MASN+LMSCGIA +PS+LSSSKSKF +A V LP A N + M+A WMPGEPRP YL
Sbjct: 1 MASNSLMSCGIAAV-YPSLLSSSKSKFVSAGVPLPNAGN-VGRIRMAAHWMPGEPRPAYL 58
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119
DGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAV ILVPEALG GNWV
Sbjct: 59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG-----ILVPEALGYGNWV 113
Query: 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLS-IAFVEHQRS 163
+AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+ + ++ +R+
Sbjct: 114 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAHLTLLDTRRT 158
>gi|87313163|gb|ABD37878.1| light-harvesting chlorophyll-a/b binding protein Lhca1 [Mesostigma
viride]
gi|145079752|tpg|DAA05929.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Mesostigma viride]
Length = 225
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/191 (52%), Positives = 131/191 (68%), Gaps = 13/191 (6%)
Query: 49 WMPGEPRPP-YLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWI 107
W PG + P +LDGS PGDFG+DPL L + P +L RY+E+E+++ RWAML V +
Sbjct: 41 WAPGLVKAPAHLDGSLPGDFGYDPLGLAKDPVSLARYREAEVMNGRWAMLGVAG-----M 95
Query: 108 LVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKD 167
L PE +G G W+ AQ+W AV GG+ TYLG +P+G T+L +EF +++VE R +EKD
Sbjct: 96 LAPELVGQGTWLSAQDW-AVTGGKPTYLGNELPYG-FGTVLAVEFFCLSWVEISRGLEKD 153
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
P K+ YPGGAFDPLGF KD E KVKE++NGRLA++AFVG Q + G GP+ NL
Sbjct: 154 PMKRIYPGGAFDPLGFGKD----EVNKVKELRNGRLAMVAFVGMWC-QGIHVGGGPVSNL 208
Query: 228 ATHLADPWHNN 238
HLADP HNN
Sbjct: 209 MDHLADPLHNN 219
>gi|255070015|ref|XP_002507089.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226522364|gb|ACO68347.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 227
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 102/201 (50%), Positives = 126/201 (62%), Gaps = 12/201 (5%)
Query: 38 NATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAML 97
N TSK +M A WMPG P YLDGS P D+GFDPL LG+ P+NL R++E+ELIH RWAML
Sbjct: 28 NGTSKVSMRATWMPGSAPPSYLDGSMPCDYGFDPLGLGKEPDNLARFQEAELIHARWAML 87
Query: 98 AVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAF 157
V + I+ G+ NWV+A + Q TYLG +P+ LP I IE +A+
Sbjct: 88 GVSGAAGAEIIT----GI-NWVEAPVQS-----QQTYLGNTIPF-PLPAIAAIEVFVMAY 136
Query: 158 VEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSA 217
VE +R E D K+ YPGGAFDP GFSK FE+ K KE+ NGR+A+LAF G + A
Sbjct: 137 VESKRGSETDRSKRMYPGGAFDPAGFSKG-ADFEKLKRKELANGRVAMLAFAGIIGEAQA 195
Query: 218 YPGTGPLENLATHLADPWHNN 238
GP+ LA HLADPWH N
Sbjct: 196 NNLEGPVAALARHLADPWHVN 216
>gi|302854202|ref|XP_002958611.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300256072|gb|EFJ40348.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 228
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 101/212 (47%), Positives = 130/212 (61%), Gaps = 11/212 (5%)
Query: 28 FTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
F + A +N + +W+PG P +L PG++GFDPL LG+ P +L+R+ ES
Sbjct: 18 FAGRRVAAVSNGCRVVMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKDPASLKRFTES 77
Query: 88 ELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTI 147
E+IH RWAML V + L E LG GNW A W AV GG+AT+ G VP+ L T+
Sbjct: 78 EVIHGRWAMLGVAGA-----LAVELLGYGNWYDAPLW-AVTGGKATWFGIEVPF-DLNTL 130
Query: 148 LVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLA 207
L EF+++A E QR+ D YPGGAFDPLGF+KD K E K+KEIKNGRLA++A
Sbjct: 131 LAFEFVAMAAAEGQRN---DAGGVIYPGGAFDPLGFAKDSSKAGELKLKEIKNGRLAMVA 187
Query: 208 FVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
F+GF Q +A G GPL L HLA+PW N
Sbjct: 188 FLGFIAQHAA-TGKGPLAALGEHLANPWGANF 218
>gi|4139222|gb|AAD03734.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
gi|40714519|dbj|BAD06923.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 228
Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 100/212 (47%), Positives = 130/212 (61%), Gaps = 11/212 (5%)
Query: 28 FTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
F+ + A +N + + +W+PG P +L PG++GFDPL LG+ P +L+R+ ES
Sbjct: 18 FSGRRVAAVSNGSRVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTES 77
Query: 88 ELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTI 147
E+IH RWAML V S L E LG GNW A W AV GG+AT+ G VP+ L +
Sbjct: 78 EVIHGRWAMLGVAGS-----LAVELLGYGNWYDAPLW-AVNGGKATWFGIEVPF-DLNAL 130
Query: 148 LVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLA 207
L EF+++A E QR D YPGGAFDPLGF+KD K E K+KEIKNGRLA++A
Sbjct: 131 LAFEFVAMAAAEGQRG---DAGGVVYPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVA 187
Query: 208 FVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
F+GF Q +A G GP+ L HLA+PW N
Sbjct: 188 FLGFVAQHAA-TGKGPIAALGEHLANPWGANF 218
>gi|18125|emb|CAA46235.1| light harvesting complex protein I-20 [Chlamydomonas reinhardtii]
Length = 224
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/212 (47%), Positives = 130/212 (61%), Gaps = 11/212 (5%)
Query: 28 FTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
F+ + A +N + + +W+PG P +L PG++GFDPL LG+ P +L+R+ ES
Sbjct: 14 FSGRRVAAVSNGSRVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTES 73
Query: 88 ELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTI 147
E+IH RWAML V S L E LG GNW A W AV GG+AT+ G VP+ L +
Sbjct: 74 EVIHGRWAMLGVAGS-----LAVELLGYGNWYDAPLW-AVNGGKATWFGIEVPF-DLNAL 126
Query: 148 LVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLA 207
L EF+++A E QR D YPGGAFDPLGF+KD K E K+KEIKNGRLA++A
Sbjct: 127 LAFEFVAMAAAEGQRG---DAGGVVYPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVA 183
Query: 208 FVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
F+GF Q +A G GP+ L HLA+PW N
Sbjct: 184 FLGFVAQHAA-TGKGPIAALGEHLANPWGANF 214
>gi|145079882|tpg|DAA05946.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Micromonas sp. CCMP490]
Length = 223
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/207 (49%), Positives = 124/207 (59%), Gaps = 16/207 (7%)
Query: 36 AANATS----KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIH 91
A NAT+ K + A WMPG P +L G+ P D+GFDPL LG+ P NL R++E+E+IH
Sbjct: 23 ATNATNGTVGKVSARAVWMPGSTPPAHLTGTLPCDYGFDPLGLGKEPANLARFQEAEIIH 82
Query: 92 CRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIE 151
RWAML V + EA+ W++A V Q TYLG P+ LP ++ IE
Sbjct: 83 SRWAMLGVAGAAG-----QEAITGVTWIEAP----VQDSQ-TYLGAESPF-PLPVVVAIE 131
Query: 152 FLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGF 211
+AFVE QRS EKDP K+ YPGGAFDP GFSK FE K KEI NGR+A+LAF G
Sbjct: 132 VFVMAFVEQQRSNEKDPAKRLYPGGAFDPAGFSKG-ADFETLKKKEIANGRVAMLAFAGL 190
Query: 212 CVQQSAYPGTGPLENLATHLADPWHNN 238
Q A GPL L H+ADPWH N
Sbjct: 191 IGQAQATNLEGPLSALGRHVADPWHVN 217
>gi|87313223|gb|ABD37908.1| light-harvesting chlorophyll-a/b binding protein Lhca6
[Chlamydomonas incerta]
Length = 192
Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 96/193 (49%), Positives = 123/193 (63%), Gaps = 11/193 (5%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFW 106
+W+PG P +L PG++GFDPL LG+ P +L+R+ ESE+IH RWAML V S
Sbjct: 1 GNWLPGSDAPAWLPEDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGS---- 56
Query: 107 ILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK 166
L E LG GNW A W AV GG+AT+ G VP+ L T+L EF+++A E QR
Sbjct: 57 -LAVELLGYGNWYDAPLW-AVNGGKATWFGIDVPF-DLNTLLAFEFVAMAAAEGQRG--- 110
Query: 167 DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
D YPGGAFDPLGF+KD K E K+KE+KNGRLA++AF+GF Q +A G GP+
Sbjct: 111 DAGGVVYPGGAFDPLGFAKDASKSGELKLKEVKNGRLAMVAFLGFVAQHAA-TGKGPIAA 169
Query: 227 LATHLADPWHNNI 239
L HL++PW N
Sbjct: 170 LGEHLSNPWGANF 182
>gi|11066109|gb|AAG28464.1|AF195794_1 chlorophyll A-B binding protein of LHCI [Chlamydomonas reinhardtii]
Length = 239
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/210 (46%), Positives = 131/210 (62%), Gaps = 11/210 (5%)
Query: 26 KFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYK 85
+ F+ + A +N + + +W+PG P +L PG++GFDPL LG+ P +L+R+
Sbjct: 16 RGFSGRRVAAVSNGSRVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFT 75
Query: 86 ESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLP 145
ESE+IH RWAML V S L E LG GNW A W AV GG+AT+ G VP+ L
Sbjct: 76 ESEVIHGRWAMLGVAGS-----LAVELLGYGNWYDAPLW-AVNGGKATWFGIEVPF-DLN 128
Query: 146 TILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLAL 205
+L EF+++A E QR + +++ PGGAFDPLGF+KD K E K+KEIKNGRLA+
Sbjct: 129 ALLAFEFVAMAAAEGQRRRCR---RRRLPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAM 185
Query: 206 LAFVGFCVQQSAYPGTGPLENLATHLADPW 235
+AF+GF Q +A G PL L HLA+PW
Sbjct: 186 VAFLGFVAQHAAT-GKAPLAALGEHLANPW 214
>gi|225580691|gb|ACN94453.1| photosystem I light-harvesting cholrophyll-a/b protein 2
[Dunaliella salina]
Length = 228
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 124/194 (63%), Gaps = 9/194 (4%)
Query: 46 SADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFF 105
+ ++ PG YL+ PG+F FDPL LG+ L+RY+E+ELIHCRWAML
Sbjct: 34 AGNFAPGSEPKEYLN-DLPGNFNFDPLELGKEKGTLQRYREAELIHCRWAMLGAAGC--- 89
Query: 106 WILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME 165
L E LGLGNW A WA V G + T+ G VP+ + TIL +E +++A E R+
Sbjct: 90 --LAVEVLGLGNWYDAPLWA-VTGDKPTWFGIEVPF-DIATILGVEVVAMAVAEGLRNDN 145
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+D EK+ YPGGAFDPLGFSKDP+ FE+ K+KE+KNGRLA++A +GF Q +A G LE
Sbjct: 146 QDMEKRLYPGGAFDPLGFSKDPKSFEDKKLKELKNGRLAMVACLGFAGQHAA-TGKPILE 204
Query: 226 NLATHLADPWHNNI 239
L HL+ P+ NN
Sbjct: 205 ALGDHLSSPFFNNF 218
>gi|159474444|ref|XP_001695335.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158275818|gb|EDP01593.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 239
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 125/204 (61%), Gaps = 11/204 (5%)
Query: 26 KFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYK 85
+ F+ + A +N + + +W+PG P +L PG++GFDPL LG+ P +L+R+
Sbjct: 16 RGFSGRRVAAVSNGSRVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFT 75
Query: 86 ESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLP 145
ESE+IH RWAML V S L E LG GNW A W AV GG+AT+ G VP+ L
Sbjct: 76 ESEVIHGRWAMLGVAGS-----LAVELLGYGNWYDAPLW-AVNGGKATWFGIEVPF-DLN 128
Query: 146 TILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLAL 205
+L EF+++A E QR D YPGGAFDPLGF+KD K E K+KEIKNGRLA+
Sbjct: 129 ALLAFEFVAMAAAEGQRG---DAGGVVYPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAM 185
Query: 206 LAFVGFCVQQSAYPGTGPLENLAT 229
+AF+GF Q +A G GP+ A+
Sbjct: 186 VAFLGFVAQHAAT-GKGPIAAWAS 208
>gi|308801082|ref|XP_003075322.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029299|gb|AAY27548.1| chloroplast light-harvesting complex I protein precursor Lhca1
[Ostreococcus tauri]
gi|116061876|emb|CAL52594.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 225
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 120/212 (56%), Gaps = 15/212 (7%)
Query: 31 VSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELI 90
S+ A A T++ + W PG P +L G P D+GFDPL LGE P+NL RY+E+EL+
Sbjct: 16 TSVKARARVTARASARPMWFPGAEAPAHLRGDLPCDYGFDPLNLGEKPDNLARYREAELM 75
Query: 91 HCRWAMLAVVSSKFFWILVPEALGLGNWVQAQ--EWAAVPGGQATYLGTPVPWGTLPTIL 148
H RWAM+ V + + E G G+W AQ W A A YLG L ++
Sbjct: 76 HARWAMMGVAGA-----VGVEIAGQGDWASAQPTTWDAT----AKYLGNETH-APLFAVI 125
Query: 149 VIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAF 208
+ + +AF E QR E + YPGG+FDP G SK + FE K KE+ NGR+A++AF
Sbjct: 126 GVNGVLVAFAESQRQAATG-EARLYPGGSFDPAGLSKG-KDFETLKRKELANGRVAMMAF 183
Query: 209 VGFCVQQSAYP-GTGPLENLATHLADPWHNNI 239
G Q A P G GP++ LA HLADPWH N+
Sbjct: 184 FGIMAQHQADPSGPGPVKQLANHLADPWHVNV 215
>gi|219362417|ref|NP_001136606.1| uncharacterized protein LOC100216729 [Zea mays]
gi|194696340|gb|ACF82254.1| unknown [Zea mays]
Length = 291
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/256 (39%), Positives = 134/256 (52%), Gaps = 56/256 (21%)
Query: 35 AAANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE------------ 79
A +K ++S+D W PG P YLDGS GD+GFDP LG+ E
Sbjct: 41 AVPKKVAKTSISSDRPLWFPGAVAPDYLDGSLVGDYGFDPFGLGKPVEYLQFELDSLDQN 100
Query: 80 -------------------------------NLERYKESELIHCRWAMLAVVSSKFFWIL 108
L+R++E ELIH RWAMLA + + L
Sbjct: 101 LAKNEAGGIIGTRFESSDVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATLGA-----L 155
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDP 168
E L W A + V G ++YLG P+P+ T+ T++ IE L I ++E QR+ E DP
Sbjct: 156 TVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-TISTLIWIEVLVIGYIEFQRNAELDP 212
Query: 169 EKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
EK+ YPGG+ FDPL + DP+K E ++ EIK+ RLA++AF+GF VQ +A G GPL N
Sbjct: 213 EKRLYPGGSYFDPLALAADPEKKERLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNW 271
Query: 228 ATHLADPWHNNIGDVI 243
ATHL+DP H I D
Sbjct: 272 ATHLSDPLHTTIFDTF 287
>gi|162458005|ref|NP_001105502.1| photosystem II subunit29 [Zea mays]
gi|2326947|emb|CAA90681.1| Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
gi|195639374|gb|ACG39155.1| hypothetical protein [Zea mays]
gi|414887094|tpg|DAA63108.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 1 [Zea
mays]
gi|414887095|tpg|DAA63109.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 2 [Zea
mays]
Length = 291
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/255 (39%), Positives = 134/255 (52%), Gaps = 56/255 (21%)
Query: 36 AANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE------------- 79
A +K + S+D W PG P YLDGS GD+GFDP LG+ E
Sbjct: 42 APKKVAKTSTSSDRPLWFPGAVAPDYLDGSLVGDYGFDPFGLGKPVEYLQFELDSLDQNL 101
Query: 80 ------------------------------NLERYKESELIHCRWAMLAVVSSKFFWILV 109
L+R++E ELIH RWAMLA + + L
Sbjct: 102 AKNEAGGIIGTRFESSEVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATLGA-----LS 156
Query: 110 PEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPE 169
E L W A + V G ++YLG P+P+ ++ T++ IE L I ++E QR+ E DPE
Sbjct: 157 VEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDPE 213
Query: 170 KKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
K+ YPGG+ FDPLG + DP+K E ++ EIK+ RLA++AF+GF VQ +A G GPL N A
Sbjct: 214 KRLYPGGSYFDPLGLAADPEKKERLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWA 272
Query: 229 THLADPWHNNIGDVI 243
THL+DP H I D
Sbjct: 273 THLSDPLHTTIFDTF 287
>gi|412990175|emb|CCO19493.1| unknown [Bathycoccus prasinos]
Length = 184
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 108/174 (62%), Gaps = 12/174 (6%)
Query: 66 DFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
D+GFDPL LGEVP NLER++E+EL++ RWAML V W + EA G G W +A A
Sbjct: 11 DYGFDPLGLGEVPANLERFREAELLNARWAMLGVAGC---WGV--EAGGFGTWQEAPLAA 65
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSK 185
Q ++ G +P + T++ E L +AF E QR E D K+ YPGG+FDP G SK
Sbjct: 66 -----QQSWGGIDLPISNMSTLVGFEILLMAFAEQQRISETDVSKRMYPGGSFDPAGLSK 120
Query: 186 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP-GTGPLENLATHLADPWHNN 238
FE K KEI NGRLA++AF+G Q AYP G GP++ L H+ADPWH N
Sbjct: 121 G-DGFESLKRKEIANGRLAMVAFLGILAQNQAYPDGLGPVQALLNHVADPWHVN 173
>gi|115472753|ref|NP_001059975.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|3075488|gb|AAC14566.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|34394009|dbj|BAC84033.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|113611511|dbj|BAF21889.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|125558786|gb|EAZ04322.1| hypothetical protein OsI_26463 [Oryza sativa Indica Group]
gi|215704418|dbj|BAG93852.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737393|dbj|BAG96322.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737709|dbj|BAG96839.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764955|dbj|BAG86652.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767447|dbj|BAG99675.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 290
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 127/239 (53%), Gaps = 53/239 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDP LG+ E
Sbjct: 57 WFPGAVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGEIIGTRFETG 116
Query: 80 --------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
L+R++E ELIH RWAMLA + + L E L W A +
Sbjct: 117 EVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGA-----LSVEWLTGVTWQDAGKVE 171
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFS 184
V G ++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG+ FDPLG +
Sbjct: 172 LVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLA 228
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
DP+K E ++ EIK+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 229 SDPEKKERLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIFDTF 286
>gi|357122377|ref|XP_003562892.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Brachypodium distachyon]
Length = 288
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 127/239 (53%), Gaps = 53/239 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDG+ GD+GFDP LG+ E
Sbjct: 57 WFPGAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDPDSLDQNLAQNLAGEVIGTRFEDA 116
Query: 80 --------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
L+R++E ELIH RWAMLA + + L E L W A +
Sbjct: 117 DIKSTPLQPYAEVFGLQRFRECELIHGRWAMLATLGA-----LTVEWLTGVTWQDAGKVE 171
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFS 184
V G ++YLG P+P+ T+ T++ IE L I ++E QR+ E DPEK+ YPGG+ FDPLG +
Sbjct: 172 LVDG--SSYLGQPLPF-TITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLA 228
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
DP+K E ++ EIK+ RLA++ F+GF VQ +A G GPL N ATHL+DP H I D +
Sbjct: 229 ADPEKKERLQLAEIKHARLAMVGFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIFDTL 286
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 95/235 (40%), Positives = 130/235 (55%), Gaps = 37/235 (15%)
Query: 22 SSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENL 81
+SK++ V AAA T W+PG P P +LDG+ P D+GFDPL LG PENL
Sbjct: 26 ASKARASVRVGAVAAARPT--------WLPGSPAPAHLDGTLPCDYGFDPLNLGADPENL 77
Query: 82 ERYKESELIHCRWAMLAVVSSKFFWILVPEAL------GLGNWVQAQEWAAVPGGQATYL 135
+ + ++EL+HCRWAML + ++ PE L L NW+ A +W +L
Sbjct: 78 KWFVQAELMHCRWAMLGLAG-----MVGPELLTKIGMADLPNWIDAGKW------DGYWL 126
Query: 136 GT-PVPWGTLPTILVIEFLSIAFVEHQRSMEKDP----------EKKKYPGGAFDPLGFS 184
G P+ + + + E ++ +M +DP YP G FDP+G++
Sbjct: 127 GAGPLFFVQMAMMNWAEVRRWQDMKAPGTMNEDPLTGANKGDTNTDVGYPKGLFDPMGYA 186
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
KDP+K EE K KEI NGRLA++A VG C Q+ GTGP++NL THLADP HNNI
Sbjct: 187 KDPKKAEELKRKEIANGRLAMVAIVG-CFAQAISTGTGPVDNLFTHLADPGHNNI 240
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 130/244 (53%), Gaps = 44/244 (18%)
Query: 22 SSKSKFFTAVS---------LPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPL 72
+SKS+F T S P +++ A +W+PG P YLDGS PGD GFDPL
Sbjct: 17 ASKSRFLTGSSGKLGREVSVKPMTSSSFKVEAKKGEWLPGLSSPSYLDGSLPGDNGFDPL 76
Query: 73 RLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQA 132
L E PENL+ Y ++EL++ RWAML V +L+PE + A +W G+A
Sbjct: 77 GLAEDPENLKWYVQAELVNSRWAMLGVAG-----MLLPEVFTKIGIINAPQW--YDAGKA 129
Query: 133 TYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPG 175
Y + T+ VIEF+ +VE +R S+ +DP K YPG
Sbjct: 130 EYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKNYSLPPNEVGYPG 183
Query: 176 GAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPW 235
G F+PL F+ EE K KE+ NGRLA+LAF+GF VQ + G GP +NL H++DPW
Sbjct: 184 GIFNPLNFAPT----EEAKEKELANGRLAMLAFLGFIVQHNV-TGKGPFDNLLQHISDPW 238
Query: 236 HNNI 239
HN I
Sbjct: 239 HNTI 242
>gi|242050544|ref|XP_002463016.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
gi|241926393|gb|EER99537.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
Length = 288
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 127/239 (53%), Gaps = 53/239 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDG+ GD+GFDP LG+ E
Sbjct: 55 WFPGAVAPDYLDGTLVGDYGFDPFGLGKPVEYLQFDLDSLDQNLAKNEPGVVIGTRFESS 114
Query: 80 --------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
L+R++E ELIH RWAMLA + + L E L W A +
Sbjct: 115 DVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATLGA-----LSVEWLTGVTWQDAGKVE 169
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFS 184
V G ++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG+ FDPLG +
Sbjct: 170 LVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLA 226
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
DP+K E ++ EIK+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 227 ADPEKKERLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIFDTF 284
>gi|226358411|gb|ACO51068.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 285
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/288 (36%), Positives = 143/288 (49%), Gaps = 56/288 (19%)
Query: 3 SNTLMSCGIATTAFPSVLSSSK---SKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYL 59
+N + T FP V +SS ++F A A+ + + W PG P +L
Sbjct: 5 TNAAATSSFMGTRFPDVYTSSGRFVARFGFGGKKAAPKKASKQTSDRPLWYPGAVAPDWL 64
Query: 60 DGSAPGDFGFDPLRLGEVPE---------------------------------------- 79
DGS GD+GFDP LG+ E
Sbjct: 65 DGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNMAGEIIGTRTEVADVKATPFQPYS 124
Query: 80 ---NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLG 136
L+R++E ELIH RWAMLA + + L E L W A + V G ++YLG
Sbjct: 125 EVFGLQRFRECELIHGRWAMLATLGA-----LTVEWLTGVTWQDAGKVELVEG--SSYLG 177
Query: 137 TPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQKFEEYKV 195
P+P+ ++ T++ IE L I F+E QR+ E DPEK+ YPGG FDPLG + DP+K ++
Sbjct: 178 QPLPF-SMTTLIWIEVLVIGFIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQL 236
Query: 196 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
EIK+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 237 AEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDTF 283
>gi|449439279|ref|XP_004137413.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449522871|ref|XP_004168449.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 250
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 128/241 (53%), Gaps = 39/241 (16%)
Query: 20 LSSSKSKFFTAVSLPAAA----NATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLG 75
LS S KF A+S+ NA A +W+PG P P YLDGS PGD GFDPL L
Sbjct: 23 LSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGLPSPTYLDGSLPGDNGFDPLGLA 82
Query: 76 EVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYL 135
E PENL Y ++EL++ RWAML V +++PE L + +W G+A Y
Sbjct: 83 EDPENLRWYTQAELVNGRWAMLGVAG-----MVLPEVLTNYGIINVPKW--YDAGKAEYF 135
Query: 136 GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAF 178
+ T+ VIEF+ +VE +R S+ +DP K+ YPGG F
Sbjct: 136 ASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIF 189
Query: 179 DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
+PL F + E + KEI NGRLA+LAF+GF VQ + G GP +N H++DPWHN
Sbjct: 190 NPLNF----EPTLEAREKEIANGRLAMLAFLGFIVQHNV-TGKGPFDNFMQHISDPWHNT 244
Query: 239 I 239
I
Sbjct: 245 I 245
>gi|307106821|gb|EFN55066.1| hypothetical protein CHLNCDRAFT_35848 [Chlorella variabilis]
Length = 219
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/194 (45%), Positives = 115/194 (59%), Gaps = 12/194 (6%)
Query: 46 SADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFF 105
+ +W+PG P YL+ + P +GFDPL L + +L+R+KESE+IH RWAML
Sbjct: 28 AGNWLPGSDTPAYLE-NLPASYGFDPLGLAKEAPSLQRFKESEVIHGRWAMLGAAG---- 82
Query: 106 WILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME 165
+L E LG GNW A V GG ATY G +P+ L T+ IEF ++A E R
Sbjct: 83 -VLGVEVLGYGNWYDA-PLPLVQGGSATYFGASIPF-DLGTLAAIEFAAMAGAESFRG-A 138
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+PEK+ YPGG FDP G SK Q +E + KEIKNGRLA++A +GF Q +A G PLE
Sbjct: 139 AEPEKRVYPGGPFDPAGMSKGNQ--DELRTKEIKNGRLAMIACLGFVAQHAAT-GASPLE 195
Query: 226 NLATHLADPWHNNI 239
L HLA+P N
Sbjct: 196 ALGAHLANPMVANF 209
>gi|356503628|ref|XP_003520609.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 125/239 (52%), Gaps = 53/239 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDP LG+ E
Sbjct: 57 WYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELA 116
Query: 80 --------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
L+R++E ELIH RWAMLA + + L E L W A +
Sbjct: 117 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGA-----LTVEWLTGVTWQDAGKVE 171
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFS 184
V G ++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG+ FDPLG +
Sbjct: 172 LVEG--SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLA 228
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
DP+K ++ EIK+ RLA++ F+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 229 SDPEKKATLQLAEIKHARLAMVGFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDTF 286
>gi|356496185|ref|XP_003516950.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 125/239 (52%), Gaps = 53/239 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDP LG+ E
Sbjct: 57 WYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELA 116
Query: 80 --------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
L+R++E ELIH RWAMLA + + L E L W A +
Sbjct: 117 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGA-----LTVEWLTGVTWQDAGKVE 171
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFS 184
V G ++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG+ FDPLG +
Sbjct: 172 LVEG--SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLA 228
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
DP+K ++ EIK+ RLA++ F+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 229 SDPEKKATLQLAEIKHARLAMVGFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDTF 286
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/247 (39%), Positives = 132/247 (53%), Gaps = 47/247 (19%)
Query: 22 SSKSKFFTAVS---------LPAAANATSKYAMSA---DWMPGEPRPPYLDGSAPGDFGF 69
+SKS+F T S P +++ + + A +W+PG P YLDGS PGD GF
Sbjct: 17 ASKSRFLTGSSGKLGREVSVKPMTSSSYRSFKVEAKKGEWLPGLSSPSYLDGSLPGDNGF 76
Query: 70 DPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPG 129
DPL L E PENL+ Y ++EL++ RWAML V +L+PE + A +W
Sbjct: 77 DPLGLAEDPENLKWYVQAELVNSRWAMLGVAG-----MLLPEVFTKIGIINAPQW--YDA 129
Query: 130 GQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK--------- 172
G+A Y + T+ VIEF+ +VE +R S+ +DP K
Sbjct: 130 GKAEYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKNYSLPPNEVG 183
Query: 173 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 232
YPGG F+PL F+ EE K KE+ NGRLA+LAF+GF VQ + G GP +NL H++
Sbjct: 184 YPGGIFNPLNFAPT----EEAKEKELANGRLAMLAFLGFIVQHNV-TGKGPFDNLLQHIS 238
Query: 233 DPWHNNI 239
DPWHN I
Sbjct: 239 DPWHNTI 245
>gi|445116|prf||1908421A light-harvesting complex IIa protein
Length = 286
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 126/239 (52%), Gaps = 53/239 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDG+ GD+GFDP LG+ E
Sbjct: 54 WFPGAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAGEIIGTRFEDA 113
Query: 80 --------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
L+R++E ELIH RWAMLA + + L E L W A +
Sbjct: 114 DVKSTPFQPYAEVFGLQRFRECELIHGRWAMLATLGA-----LTVEWLTGVTWQDAGKVE 168
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFS 184
V G ++YLG P+P+ T+ T++ IE L I ++E QR+ E DPE++ YPGG+ FDPLG +
Sbjct: 169 LVDG--SSYLGQPLPF-TITTLIWIEVLVIGYIEFQRNAELDPERRLYPGGSYFDPLGLA 225
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
DP+K E ++ EIK+ RLA++AF+GF VQ +A G G L N ATHL+DP H I D
Sbjct: 226 ADPEKKETLQLAEIKHARLAMVAFLGFAVQAAA-TGKGRLNNWATHLSDPLHTTIFDTF 283
>gi|255639053|gb|ACU19827.1| unknown [Glycine max]
Length = 290
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 125/239 (52%), Gaps = 53/239 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDP LG+ E
Sbjct: 57 WYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELA 116
Query: 80 --------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
L+R++E ELIH RWAMLA + + L E L W A +
Sbjct: 117 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGA-----LTVEWLTGVTWQDAGKVE 171
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFS 184
V G ++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG+ FDPLG +
Sbjct: 172 LVEG--SSYLGQPLPF-SITTLIWIEALVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLA 228
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
DP+K ++ EIK+ RLA++ F+GF V Q+A G GPL N ATHL+DP H I D
Sbjct: 229 SDPEKKATLQLAEIKHARLAMVGFLGFAV-QAAVTGKGPLNNWATHLSDPLHTTIIDTF 286
>gi|255574383|ref|XP_002528105.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223532494|gb|EEF34284.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 285
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 106/278 (38%), Positives = 142/278 (51%), Gaps = 62/278 (22%)
Query: 14 TAFPSVLSSS-----KSKFFTAVSLPA-AANATSKYAMSADWMPGEPRPPYLDGSAPGDF 67
T P V S+S + F T S P +A TS + W PG P +LDGS GD+
Sbjct: 16 TRLPDVYSNSGRVQARFGFGTKKSAPKRSAKPTSDRPL---WYPGAKAPEWLDGSLVGDY 72
Query: 68 GFDPLRLGEVPE-------------------------------------------NLERY 84
GFDP LG+ E L+R+
Sbjct: 73 GFDPFGLGKPAEYLQFELDSLDQNLAKNIAGDIIGTRTEAADVKSTPFQPYSEVFGLQRF 132
Query: 85 KESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTL 144
+E ELIH RWAMLA + + L E L W A + V G ++YLG P+P+ ++
Sbjct: 133 RECELIHGRWAMLATLGA-----LTVEWLTGVTWQDAGKVELVEG--SSYLGQPLPF-SI 184
Query: 145 PTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRL 203
T++ IE L I ++E QR+ E DPEK+ YPGG F DPLG ++DP+K ++ EIK+ RL
Sbjct: 185 TTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAEDPEKKATLQLAEIKHARL 244
Query: 204 ALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 241
A++AF+GF V Q+A G GPL N ATHL+DP H I D
Sbjct: 245 AMVAFLGFAV-QAAVTGKGPLNNWATHLSDPLHTTIID 281
>gi|322812534|pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 127/252 (50%), Gaps = 55/252 (21%)
Query: 39 ATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE---------------- 79
A K S D W PG P YLDGS GD+GFDP LG+ E
Sbjct: 1 AQPKSGFSTDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKN 60
Query: 80 ---------------------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
L+R++E ELIH RWAMLA + + L E
Sbjct: 61 LAGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGA-----LTVEG 115
Query: 113 LGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK 172
L W A + + G ++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+
Sbjct: 116 LTGITWQDAGKVELIEG--SSYLGQPLPF-SMTTLIWIEVLVIGYIEFQRNAELDTEKRL 172
Query: 173 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 232
YPGG FDPLG + DP+K ++ EIK+ RLA++ F+GF V Q+A G GPL N THL+
Sbjct: 173 YPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAV-QAAVTGKGPLNNWVTHLS 231
Query: 233 DPWHNNIGDVII 244
DP H I D +
Sbjct: 232 DPLHTTILDRFL 243
>gi|159147191|gb|ABW90990.1| LHCB4 [Bambusa oldhamii]
Length = 287
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 126/239 (52%), Gaps = 53/239 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDP+ LG+ E
Sbjct: 54 WFPGAVAPEYLDGSLVGDYGFDPIGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFEPG 113
Query: 80 --------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
L+R++E ELIH RWAMLA + + L E L W A +
Sbjct: 114 EVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGA-----LSVEWLTGVTWQDAGKVE 168
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFS 184
G ++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG+ FDPLG +
Sbjct: 169 LENG--SSYLGQPLPF-SMTTLIWIEVLLIGYIEFQRNAELDPEKRLYPGGSYFDPLGLA 225
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
DP+K E ++ EIK+ RLA++ F+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 226 SDPEKKERLQLAEIKHARLAMVGFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIFDTF 283
>gi|357147885|ref|XP_003574529.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 128/240 (53%), Gaps = 39/240 (16%)
Query: 21 SSSKSKFFTAVSLPAAANATSKYAM----SADWMPGEPRPPYLDGSAPGDFGFDPLRLGE 76
+S S F S A++TS+ ++ +W+PG P P YLDG PGD GFDPL L E
Sbjct: 17 ASLNSGFLGHSSRLGLASSTSRRSLRVEAKGEWLPGLPSPAYLDGKLPGDNGFDPLGLAE 76
Query: 77 VPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLG 136
PENL Y ++EL++ RWAML V +L PE L + A EW G++TY
Sbjct: 77 DPENLRWYVQAELVNGRWAMLGVAG-----MLTPELLTKIGLINAPEW--YDAGKSTYFA 129
Query: 137 TPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFD 179
+ T+ V+EF+ +VE +R + +DP K YPG F+
Sbjct: 130 SS------STLFVVEFILFHYVEIRRWQDIKEPGCVNQDPIFKSYSLPPHECGYPGSVFN 183
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
PL F+ E K KEI NGRLA+LA++GF VQ A G GPL+NL HL+DPWHN I
Sbjct: 184 PLNFAPT----LEAKEKEIANGRLAMLAYLGFSVQH-AVTGKGPLDNLFQHLSDPWHNTI 238
>gi|160713961|gb|ABX47016.1| chloroplast chlorophyll a/b binding protein cab-PhE7 [Phyllostachys
edulis]
Length = 287
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 125/239 (52%), Gaps = 53/239 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDP LG+ E
Sbjct: 54 WFPGAVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNDAGDIIGTRFEPG 113
Query: 80 --------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
L+R++E ELIH RWAMLA + + L E L W A +
Sbjct: 114 EVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGA-----LSVEWLTGVTWQDAGKVE 168
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFS 184
V G ++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG+ FDPLG +
Sbjct: 169 LVDG--SSYLGQPLPF-SMTTLIWIEVLLIGYIEFQRNAELDSEKRLYPGGSYFDPLGLA 225
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
DP+K E ++ EIK+ RLA++ F+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 226 SDPEKKERLQLAEIKHARLAMVGFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIFDTF 283
>gi|224140409|ref|XP_002323575.1| predicted protein [Populus trichocarpa]
gi|222868205|gb|EEF05336.1| predicted protein [Populus trichocarpa]
Length = 283
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 125/239 (52%), Gaps = 53/239 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDP LG E
Sbjct: 52 WYPGAKAPEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSLDQNLAKNLAGDIIGTRTEVS 111
Query: 80 --------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
L+R++E ELIH RWAMLA + + L E L W A +
Sbjct: 112 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGA-----LSVEWLTGVTWQDAGKVE 166
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFS 184
V G ++YLG P+P+ ++ T+++IE L I ++E QR+ E DPEK+ YPGG F DPLG +
Sbjct: 167 LVEG--SSYLGQPLPF-SITTLILIEVLVIGYIEFQRNAELDPEKRLYPGGNFFDPLGLA 223
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
DP+K ++ EIK+ RLA++AF+GF V Q+ G GPL N ATHL+DP H I D +
Sbjct: 224 ADPEKKATLQLAEIKHARLAMVAFLGFAV-QAWVTGKGPLNNWATHLSDPLHTTIIDTL 281
>gi|118489398|gb|ABK96503.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 283
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 125/239 (52%), Gaps = 53/239 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDP LG E
Sbjct: 52 WYPGAKAPEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSLDQNLAKNLAGDIIGTRTEVS 111
Query: 80 --------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
L+R++E ELIH RWAMLA + + L E L W A +
Sbjct: 112 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGA-----LSVEWLTGVTWQDAGKVE 166
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFS 184
V G ++YLG P+P+ ++ T+++IE L I ++E QR+ E DPEK+ YPGG F DPLG +
Sbjct: 167 LVEG--SSYLGQPLPF-SITTLILIEVLVIGYIEFQRNAELDPEKRLYPGGNFFDPLGLA 223
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
DP+K ++ EIK+ RLA++AF+GF V Q+ G GPL N ATHL+DP H I D +
Sbjct: 224 ADPEKKATLQLAEIKHARLAMVAFLGFAV-QAWVTGKGPLNNWATHLSDPLHTTIIDTL 281
>gi|217072728|gb|ACJ84724.1| unknown [Medicago truncatula]
gi|388501002|gb|AFK38567.1| unknown [Medicago truncatula]
Length = 289
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 124/239 (51%), Gaps = 53/239 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P +LDGS GD+GFDP LG+ E
Sbjct: 57 WFPGAKSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFA 116
Query: 80 --------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
L+R++E ELIH RWAMLA + + L E L W A +
Sbjct: 117 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGA-----LTVEWLTGVTWQDAGKVE 171
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFS 184
V G +TYLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG +
Sbjct: 172 LVEG--STYLGQPLPF-SITTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLA 228
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
DP+K ++ EIK+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 229 SDPEKKATLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDTF 286
>gi|346987811|gb|AEO51756.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 286
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 102/278 (36%), Positives = 138/278 (49%), Gaps = 57/278 (20%)
Query: 14 TAFPSVLSSSKSKFFTAVSLPAAANATSKYAM-SAD---WMPGEPRPPYLDGSAPGDFGF 69
T P+ + S + A K++ SAD W PG P YLDGS GD+GF
Sbjct: 16 TRLPADVYSKSGRVQARFGFRTKKAAPKKFSKPSADRPLWYPGAKAPEYLDGSLVGDYGF 75
Query: 70 DPLRLGEVPE-------------------------------------------NLERYKE 86
DP LG+ E L+R++E
Sbjct: 76 DPFGLGKPVEYLQYDLDSLDQNLAKNMAGDIIGTRVESSEVKSTPFQPYTEVFGLQRFRE 135
Query: 87 SELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPT 146
ELIH RWAMLA + + L E L W A + V G ++YLG P+P+ ++ T
Sbjct: 136 CELIHGRWAMLATLGA-----LSVEWLTGVTWQDAGKVELVEG--SSYLGQPLPF-SIST 187
Query: 147 ILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLAL 205
++ IE L I ++E QR+ E DPEK+ YPGG F DPLG + DP+K ++ EIK+ RLA+
Sbjct: 188 LIWIEVLLIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAM 247
Query: 206 LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
+ F+GF V Q+A G GPL N ATHL+DP H I D +
Sbjct: 248 VGFLGFAV-QAAVTGKGPLNNWATHLSDPLHTTIIDTL 284
>gi|449460307|ref|XP_004147887.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
gi|449516143|ref|XP_004165107.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
Length = 284
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 94/237 (39%), Positives = 126/237 (53%), Gaps = 53/237 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P +LDGS GD+GFDP LG+ E
Sbjct: 53 WFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESA 112
Query: 80 --------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
L+R++E ELIH RWAMLA + + L E L W A +
Sbjct: 113 EVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGA-----LSVEWLTGVTWQDAGKVE 167
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFS 184
V G ++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG F DPLG +
Sbjct: 168 LVEG--SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLA 224
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 241
+DP+K ++ EIK+ RLA++AF+GF V Q+A G GPL N ATHL+DP H I D
Sbjct: 225 EDPEKKAVLQLAEIKHARLAMVAFLGFAV-QAAVTGKGPLNNWATHLSDPLHTTIID 280
>gi|398313945|emb|CCI55399.1| PSI antenna protein Lhca4 [Marchantia polymorpha]
Length = 249
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 100/251 (39%), Positives = 130/251 (51%), Gaps = 36/251 (14%)
Query: 7 MSCGIATTAFPSVLSSSK-SKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPG 65
+S + T+F S SS++ S+ + P ++ + A +W+PG P P YL+GS G
Sbjct: 11 VSSAVCKTSFLSGTSSTRFSRNVQVAAAPISSQSLKVEAKKGEWLPGLPSPAYLNGSLAG 70
Query: 66 DFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
D GFDPL L E P L Y ++EL + RWAML V +LVPE L + A W
Sbjct: 71 DNGFDPLGLAEDPAALNWYVQAELQNGRWAMLGVAG-----MLVPEVLTKIGLINAPLW- 124
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK----- 172
G+ Y T+ VIEF+ +VE +R S+ +DP K
Sbjct: 125 -YDAGKVEYFAPA------STLFVIEFILFHYVEIRRWQDIKYPGSVSQDPFFKSYKLPP 177
Query: 173 ----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
YPGG F+PL F + +EYK KEI NGRLA+LAF+G V QS G GP ENL
Sbjct: 178 GDVGYPGGIFNPLKFPAN----QEYKEKEIANGRLAMLAFLGMLV-QSKLTGAGPFENLL 232
Query: 229 THLADPWHNNI 239
THLADPWH I
Sbjct: 233 THLADPWHTTI 243
>gi|357468737|ref|XP_003604653.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355505708|gb|AES86850.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 347
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 124/239 (51%), Gaps = 53/239 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P +LDGS GD+GFDP LG+ E
Sbjct: 115 WFPGAKSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFA 174
Query: 80 --------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
L+R++E ELIH RWAMLA + + L E L W A +
Sbjct: 175 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGA-----LTVEWLTGVTWQDAGKVE 229
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFS 184
V G +TYLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG +
Sbjct: 230 LVEG--STYLGQPLPF-SITTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLA 286
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
DP+K ++ EIK+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 287 SDPEKKATLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDTF 344
>gi|15231990|ref|NP_187506.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
gi|38503262|sp|Q9XF88.1|CB4B_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.2,
chloroplastic; AltName: Full=LHCB4.2; AltName:
Full=LHCII protein 4.2; Flags: Precursor
gi|4741954|gb|AAD28774.1|AF134127_1 Lhcb4.2 protein [Arabidopsis thaliana]
gi|6403491|gb|AAF07831.1|AC010871_7 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17473745|gb|AAL38316.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148559|gb|AAM10170.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332641177|gb|AEE74698.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
Length = 287
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/271 (37%), Positives = 134/271 (49%), Gaps = 58/271 (21%)
Query: 22 SSKSKFFTAVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGE 76
SS S FTA A+ K A + W PG P YLDGS GD+GFDP LG+
Sbjct: 23 SSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGK 82
Query: 77 VPE-------------------------------------------NLERYKESELIHCR 93
E L+R++E ELIH R
Sbjct: 83 PAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGR 142
Query: 94 WAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFL 153
WAMLA + + + E L W A + V G ++YLG P+P+ ++ T++ IE L
Sbjct: 143 WAMLATLGA-----ITVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVL 194
Query: 154 SIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFC 212
I ++E QR+ E D EK+ YPGG F DPLG + DP K + ++ EIK+ RLA++ F+GF
Sbjct: 195 VIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFA 254
Query: 213 VQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
VQ +A G GPL N ATHL+DP H I D
Sbjct: 255 VQAAA-TGKGPLNNWATHLSDPLHTTIIDTF 284
>gi|169930144|gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Capsicum annuum]
Length = 250
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 128/239 (53%), Gaps = 37/239 (15%)
Query: 20 LSSSKSKFFTAVSL-PAAANATSKY-AMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77
L+ S K VS P+ +N + K A +W+PG P YLDGS PGD GFDPL L E
Sbjct: 23 LTGSSGKLNREVSFRPSTSNNSFKVEAKKGEWLPGLASPAYLDGSLPGDNGFDPLGLAED 82
Query: 78 PENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGT 137
PENL+ Y ++EL++ RWAML V +L+PE + +W G+A Y +
Sbjct: 83 PENLKWYIQAELVNGRWAMLGVAG-----MLLPEVFTSIGILNVPKW--YDAGKAEYFAS 135
Query: 138 PVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFDP 180
T+ VIEF+ +VE +R + +DP K YPGG F+P
Sbjct: 136 S------STLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKNYSLPPNECGYPGGIFNP 189
Query: 181 LGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
L F+ EE K KE+ NGRLA+LAF+GF VQ + G GP +NL HL+DPWHN I
Sbjct: 190 LNFAAT----EEAKEKELANGRLAMLAFLGFIVQHNV-TGKGPFDNLLQHLSDPWHNTI 243
>gi|297829418|ref|XP_002882591.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
gi|297328431|gb|EFH58850.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
Length = 287
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 124/239 (51%), Gaps = 53/239 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDP LG+ E
Sbjct: 55 WFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEAV 114
Query: 80 --------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
L+R++E ELIH RWAMLA + + + E L W A +
Sbjct: 115 DPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGA-----ITVEWLTGVTWQDAGKVE 169
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFS 184
V G ++YLG P+P+ ++ T++ IE L + ++E QR+ E D EK+ YPGG F DPLG +
Sbjct: 170 LVDG--SSYLGQPLPF-SISTLIWIEVLVVGYIEFQRNAELDSEKRLYPGGKFFDPLGLA 226
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
DP+K + ++ EIK+ RLA++ F+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 227 SDPEKKAQLQLAEIKHARLAMVGFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDTF 284
>gi|4689382|gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [Vigna radiata]
Length = 290
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 125/239 (52%), Gaps = 53/239 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P +LDGS GD+GFDP LG+ E
Sbjct: 57 WYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNEAGIIIGTRTEVA 116
Query: 80 --------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
L+R++E ELIH RWAMLA + + L E L W A +
Sbjct: 117 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGA-----LSVEWLTGVTWQDAGKVE 171
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFS 184
V G ++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG+ FDPLG +
Sbjct: 172 LVEG--SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLA 228
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
DP+K ++ EIK+ RLA++ F+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 229 SDPEKKATLQLAEIKHARLAMVGFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDTF 286
>gi|110377766|gb|ABG73415.1| chloroplast pigment-binding protein CP29 [Nicotiana tabacum]
Length = 285
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 126/240 (52%), Gaps = 54/240 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDP LG+ E
Sbjct: 51 WYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTELA 110
Query: 80 --------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
L+R++E ELIH RWAMLA + + L E L W A +
Sbjct: 111 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGA-----LTVEWLTGITWQDAGKVE 165
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAF-VEHQRSMEKDPEKKKYPGGAF-DPLGF 183
V G ++YLG P+P+ ++ T++ IE L I + VE QR+ E DPEK+ YPGG+F DPLG
Sbjct: 166 LVEG--SSYLGQPLPF-SITTLIWIEVLVIGYIVEFQRNAELDPEKRLYPGGSFFDPLGL 222
Query: 184 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
+ DP+K ++ EIK+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 223 AADPEKKATLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIFDTF 281
>gi|312281599|dbj|BAJ33665.1| unnamed protein product [Thellungiella halophila]
Length = 288
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 125/239 (52%), Gaps = 53/239 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W PG P +LDGS GD+GFDP LG+ E L+
Sbjct: 55 WFPGAKSPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEEA 114
Query: 83 -----------------RYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
R++E ELIH RWAMLA + + L E L W A +
Sbjct: 115 APKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGA-----LSVEWLTGVTWQDAGKVE 169
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFS 184
V G ++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG +
Sbjct: 170 LVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLA 226
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
DP+K + ++ EIK+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 227 SDPEKTAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDTF 284
>gi|225440674|ref|XP_002279834.1| PREDICTED: chlorophyll a-b binding protein CP29.2, chloroplastic
[Vitis vinifera]
gi|147784938|emb|CAN77492.1| hypothetical protein VITISV_010727 [Vitis vinifera]
Length = 288
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 126/240 (52%), Gaps = 53/240 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P +LDG+ GD+GFDP LG+ E
Sbjct: 56 WFPGAVAPEWLDGTLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNIAGDVIGTRFEGG 115
Query: 80 --------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
L+R++E ELIH RWAMLA + + L E+L W A +
Sbjct: 116 EVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGA-----LAVESLTGVTWQDAGKVE 170
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFS 184
+ G ++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG F DPLG +
Sbjct: 171 LIEG--SSYLGQPLPF-SMTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLA 227
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 244
DP+K ++ EIK+ RLA++ F+GF V Q+A G GPL N ATHL+DP H I D +
Sbjct: 228 ADPEKKAVLQLAEIKHARLAMIGFLGFAV-QAAVTGKGPLNNWATHLSDPLHTTIIDNVF 286
>gi|374412430|gb|AEZ49173.1| chlorophyll a/b binding protein 4 [Wolffia australiana]
Length = 250
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/262 (37%), Positives = 136/262 (51%), Gaps = 47/262 (17%)
Query: 7 MSCGIATTAFPSVLSSSKSKFFTAVS---------LPAAANATSKYAMSA---DWMPGEP 54
M+ A T+ + S+S+F T S P+A+ A + +SA +W+PG
Sbjct: 1 MASVTAQTSLAVIRPCSRSRFLTGSSPAKLRPVSRNPSASRAVPAFRVSAKKGEWLPGLA 60
Query: 55 RPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALG 114
P YL+GS PGD GFDPL L E PENL+ + ++EL + RWAML V +L+PE
Sbjct: 61 SPDYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELQNGRWAMLGVAG-----MLLPEVFT 115
Query: 115 LGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEK 166
+ A +W G+ Y + T+ VIEF+ +VE +R S+ +
Sbjct: 116 KIGIINAPQW--YDAGKQEYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQ 167
Query: 167 DPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSA 217
DP K YPGG F+PL F+ E K KEI NGRLA+LAF+GF +Q +
Sbjct: 168 DPIFKSYRLPPNEVGYPGGIFNPLNFAPS----LEAKEKEIANGRLAMLAFLGFLIQHN- 222
Query: 218 YPGTGPLENLATHLADPWHNNI 239
G GP +NL HL+DPWHN I
Sbjct: 223 LTGKGPFDNLLQHLSDPWHNTI 244
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 114/196 (58%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL+G PGD+G+DP L + PEN ++Y+ ELIH RWAML +KF
Sbjct: 105 PEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYC 164
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + GG +Y G +P + + V E + + E+ R+ D
Sbjct: 165 GPEAV----WFKTGALL-LDGGTLSYFGASIPINLIAAV-VAEVILVGGAEYYRATNGLD 218
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG +KDP +F KVKEIKNGRLA+ + +GF V Q+ G GP+ENL
Sbjct: 219 FEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFV-QAYVTGEGPVENL 277
Query: 228 ATHLADPWHNNIGDVI 243
A HL+DP+ NN+ V+
Sbjct: 278 AAHLSDPFGNNLLTVL 293
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 114/196 (58%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL+G PGD+G+DP L + PEN ++Y+ ELIH RWAML +KF
Sbjct: 105 PEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIMPEAFNKFGAYC 164
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + GG +Y G +P + + V E + + E+ R+ D
Sbjct: 165 GPEAV----WFKTGALL-LDGGTLSYFGASIPINLIAAV-VAEVILVGGAEYYRATNGLD 218
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG +KDP +F KVKEIKNGRLA+ + +GF V Q+ G GP+ENL
Sbjct: 219 FEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFV-QAYVTGEGPVENL 277
Query: 228 ATHLADPWHNNIGDVI 243
A HL+DP+ NN+ V+
Sbjct: 278 AAHLSDPFGNNLLTVL 293
>gi|15241005|ref|NP_195773.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
gi|38502901|sp|Q07473.1|CB4A_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.1,
chloroplastic; AltName: Full=LHCB4.1; AltName:
Full=LHCII protein 4.1; Flags: Precursor
gi|298036|emb|CAA50712.1| CP29 [Arabidopsis thaliana]
gi|7327812|emb|CAB82269.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|15081815|gb|AAK82562.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16323075|gb|AAL15272.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16648983|gb|AAL24343.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|20148703|gb|AAM10242.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|22137102|gb|AAM91396.1| At5g01530/F7A7_50 [Arabidopsis thaliana]
gi|110741014|dbj|BAE98601.1| Lhcb4- protein [Arabidopsis thaliana]
gi|332002974|gb|AED90357.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
Length = 290
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 125/238 (52%), Gaps = 53/238 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W PG P +LDGS GD+GFDP LG+ E L+
Sbjct: 58 WYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAA 117
Query: 83 -----------------RYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
R++E ELIH RWAMLA + + L E L W A +
Sbjct: 118 DAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGA-----LSVEWLTGVTWQDAGKVE 172
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFS 184
V G ++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG +
Sbjct: 173 LVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLA 229
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDV 242
DP+K + ++ EIK+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 230 ADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDT 286
>gi|20260162|gb|AAM12979.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 125/238 (52%), Gaps = 53/238 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W PG P +LDGS GD+GFDP LG+ E L+
Sbjct: 58 WYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAA 117
Query: 83 -----------------RYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
R++E ELIH RWAMLA + + L E L W A +
Sbjct: 118 DAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGA-----LSVEWLTGVTWQDAGKVE 172
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFS 184
V G ++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG +
Sbjct: 173 LVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLA 229
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDV 242
DP+K + ++ EIK+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 230 ADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDT 286
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
Length = 251
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 131/240 (54%), Gaps = 38/240 (15%)
Query: 20 LSSSKSKFFTAVSLPAAANATSKYAMSA---DWMPGEPRPPYLDGSAPGDFGFDPLRLGE 76
L+ + SK +S+ A+++ + + A +W+PG P P YL+GS PGD GFDPL L E
Sbjct: 23 LAGAPSKLNRELSIKPMASSSPSFKVEAKKGEWLPGLPSPSYLNGSLPGDNGFDPLGLAE 82
Query: 77 VPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLG 136
PENL + ++EL++ RWAML V +L+PE + A +W G+A Y
Sbjct: 83 DPENLRWFVQAELVNGRWAMLGVAG-----MLLPEVFTKIGIINAPQW--YDAGKAEYFA 135
Query: 137 TPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFD 179
+ T+ VIEF+ +VE +R + +DP K+ YPGG F+
Sbjct: 136 SS------STLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFN 189
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
PL F+ E K KE+ NGRLA+LAF+GF +Q + G GP ENL H++DPWHN I
Sbjct: 190 PLNFAPT----IEAKEKELANGRLAMLAFLGFVIQHNV-TGKGPFENLLQHISDPWHNTI 244
>gi|413922346|gb|AFW62278.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 244
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 116/215 (53%), Gaps = 35/215 (16%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS 101
K +W+PG P P YLDGS PGD GFDPL L E PENL Y ++EL++ RWAML V
Sbjct: 42 KAEAKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAG 101
Query: 102 SKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQ 161
+L+PE L + A +W G++ Y + T+ VIEF+ +VE +
Sbjct: 102 -----MLIPEVLTKAGLINAPQW--YDAGKSEYFASS------STLFVIEFILFHYVEIR 148
Query: 162 R--------SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLA 204
R S+ +DP K YPG F+PL F+ E K KE+ NGRLA
Sbjct: 149 RWQDIKNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAPT----LEAKEKELANGRLA 204
Query: 205 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+LAF+ F +Q + G GP +NL HL+DPWHN I
Sbjct: 205 MLAFLAFLIQHNVT-GKGPFDNLLQHLSDPWHNTI 238
>gi|30692874|ref|NP_190331.3| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
gi|115385|sp|P27521.1|CA4_ARATH RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCI type III CAB-4; Flags: Precursor
gi|166646|gb|AAA32760.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog [Arabidopsis
thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|332644764|gb|AEE78285.1| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
Length = 251
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 129/248 (52%), Gaps = 40/248 (16%)
Query: 14 TAFPSVLSSSKSKF-----FTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFG 68
T+ P L+ S + FT++ A ++ A +W+PG P YL GS GD G
Sbjct: 17 TSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNG 76
Query: 69 FDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVP 128
FDPL L E PENL+ + ++EL++ RWAML V +L+PE + EW
Sbjct: 77 FDPLGLAEDPENLKWFVQAELVNGRWAMLGVAG-----MLLPEVFTKIGIINVPEW--YD 129
Query: 129 GGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK-------- 172
G+ Y + T+ VIEF+ +VE +R S+ +DP K+
Sbjct: 130 AGKEQYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEV 183
Query: 173 -YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 231
YPGG F+PL F+ +E K KE+ NGRLA+LAF+GF VQ + G GP ENL HL
Sbjct: 184 GYPGGIFNPLNFAPT----QEAKEKELANGRLAMLAFLGFVVQHNV-TGKGPFENLLQHL 238
Query: 232 ADPWHNNI 239
+DPWHN I
Sbjct: 239 SDPWHNTI 246
>gi|3789952|gb|AAC67557.1| chlorophyll a/b-binding protein presursor [Oryza sativa Japonica
Group]
Length = 244
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 136/256 (53%), Gaps = 41/256 (16%)
Query: 7 MSCGIATTAFPSVLSSS--KSKFFTAVSLPAAANATSKYAMSAD----WMPGEPRPPYLD 60
M+ A T ++LSS+ KS F S A T++ + A+ W+PG P P YL+
Sbjct: 1 MASDTARTPVAALLSSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPSPTYLN 60
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQ 120
GS PGD GFDPL L E PENL + ++EL++ RWAML V +L+PE L +
Sbjct: 61 GSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAG-----MLLPEVLTKIGLID 115
Query: 121 AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---- 168
A +W G+ATY + T+ VIEF+ +VE ++ + +DP
Sbjct: 116 APQW--YDAGKATYFASS------NTLFVIEFILFHYVEIRQWQDIKNPGCVNQDPIFKS 167
Query: 169 -----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
++ YPG F+PL F + E K KE+ NGRLA+LAF+GF VQ + GP
Sbjct: 168 YRLPSDECGYPGSVFNPLNF----EPTLEAKEKELANGRLAMLAFLGFLVQHNVTQ-KGP 222
Query: 224 LENLATHLADPWHNNI 239
+NL HL+DPWHN I
Sbjct: 223 FDNLLQHLSDPWHNTI 238
>gi|297810243|ref|XP_002873005.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
gi|297318842|gb|EFH49264.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 125/239 (52%), Gaps = 53/239 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W PG P +LDGS GD+GFDP LG+ E L+
Sbjct: 59 WYPGAISPEWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAA 118
Query: 83 -----------------RYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
R++E ELIH RWAMLA + + L E L W A +
Sbjct: 119 DAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGA-----LSVEWLTGVTWQDAGKVE 173
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFS 184
V G ++YLG P+P+ ++ T++ IE L + ++E QR+ E D EK+ YPGG FDPLG +
Sbjct: 174 LVDG--SSYLGQPLPF-SISTLIWIEVLVVGYIEFQRNAELDSEKRLYPGGKYFDPLGLA 230
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
DP+K + ++ EIK+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 231 ADPEKRAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDTF 288
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 114/196 (58%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL+G PGD+G+DP L + PEN ++Y+ ELIH RWAML +KF
Sbjct: 80 PEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYC 139
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + GG +Y G +P + + V E + + E+ R+ D
Sbjct: 140 GPEAV----WFKTGALL-LDGGTLSYFGASIPINLIAAV-VAEVILVGGAEYYRATNGLD 193
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG +KDP +F KVKEIKNGRLA+ + +GF V Q+ G GP+ENL
Sbjct: 194 FEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFV-QAYVTGEGPVENL 252
Query: 228 ATHLADPWHNNIGDVI 243
A HL+DP+ NN+ V+
Sbjct: 253 AAHLSDPFGNNLLTVL 268
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 114/196 (58%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL+G PGD+G+DP L + PEN ++Y+ ELIH RWAML +KF
Sbjct: 105 PEYLNGEVPGDYGYDPFGLIKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYC 164
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + GG +Y G +P + + V E + + E+ R+ D
Sbjct: 165 GPEAV----WFKTGALL-LDGGTLSYFGASIPINLIAAV-VAEVILVGGAEYYRATNGLD 218
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG +KDP +F KVKEIKNGRLA+ + +GF V Q+ G GP+ENL
Sbjct: 219 FEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFV-QAYVTGEGPVENL 277
Query: 228 ATHLADPWHNNIGDVI 243
A HL+DP+ NN+ V+
Sbjct: 278 AAHLSDPFGNNLLTVL 293
>gi|116786785|gb|ABK24236.1| unknown [Picea sitchensis]
gi|116790888|gb|ABK25778.1| unknown [Picea sitchensis]
gi|224285609|gb|ACN40523.1| unknown [Picea sitchensis]
Length = 251
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 126/250 (50%), Gaps = 46/250 (18%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATS-----------KYAMSADWMPGEPRPPYLDGSAPGD 66
S S +S F T S+ A K +W+PG P YL+GS PGD
Sbjct: 13 SCRSVCRSGFLTGSSVSRLARRVRPGSNPAPARSFKVEAKGEWLPGLSSPTYLNGSLPGD 72
Query: 67 FGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAA 126
GFDPL L E PE+L+ Y ++EL++ RWAML V +L+PE L ++ +W
Sbjct: 73 NGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAG-----MLIPEVLTSFGFIDVPKW-- 125
Query: 127 VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK------ 172
G+ Y + T+ VIEF+ +VE +R S+ +DP K
Sbjct: 126 YDAGKVEYFASS------STLFVIEFILFHYVELRRWQDIKYPGSVNQDPVFKNYSLPPN 179
Query: 173 ---YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 229
YPGG F+PL FS E K KE+ NGRLA+LAF+GF VQ + G GP ENL
Sbjct: 180 EVGYPGGIFNPLNFSPS----MEAKEKELANGRLAMLAFLGFVVQHNV-TGKGPFENLLQ 234
Query: 230 HLADPWHNNI 239
HL+DPWHN I
Sbjct: 235 HLSDPWHNTI 244
>gi|195617028|gb|ACG30344.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 252
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 116/215 (53%), Gaps = 35/215 (16%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS 101
K +W+PG P P YLDGS PGD GFDPL L E PENL Y ++EL++ RWAML V
Sbjct: 50 KAEAKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAG 109
Query: 102 SKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQ 161
+L+PE L + A +W G++ Y + T+ VIEF+ +VE +
Sbjct: 110 -----MLIPEVLTKAGLINAPQW--YDAGKSEYFASS------STLFVIEFILFHYVEIR 156
Query: 162 R--------SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLA 204
R S+ +DP K YPG F+PL F+ E K KE+ NGRLA
Sbjct: 157 RWQDIKNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAPT----LEAKEKELANGRLA 212
Query: 205 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+LAF+ F +Q + G GP +NL HL+DPWHN I
Sbjct: 213 MLAFLAFLIQHNVT-GKGPFDNLLQHLSDPWHNTI 246
>gi|169743368|gb|ACA66262.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 245
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 126/241 (52%), Gaps = 40/241 (16%)
Query: 21 SSSKSKFFTAVSLPAAANATSKYAM----SADWMPGEPRPPYLDGSAPGDFGFDPLRLGE 76
+S KS F S A+++++ ++ +W+PG P YLDGS GD GFDPL L E
Sbjct: 17 ASLKSGFLGHSSRLGRASSSTRRSLRVEAKGEWLPGLASPAYLDGSLAGDNGFDPLGLAE 76
Query: 77 VPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLG 136
PENL Y ++EL++ RWAML V +LVPE L + A +W G++TY
Sbjct: 77 DPENLRWYVQAELVNARWAMLGVAG-----VLVPEVLTKIGIINAPQW--YDAGKSTYFA 129
Query: 137 TPVPWGTLPTILVIEFLSIAFVEHQR---------SMEKDPEKKK---------YPGGAF 178
+ T+ VIEF+ +VE +R + +DP K YPG F
Sbjct: 130 SS------STLFVIEFILFHYVEIRRWQDIIKNPGCVNQDPIFKNYSLPPHECGYPGSVF 183
Query: 179 DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
+PL F + E K KE+ NGRLA+LAF+GF VQ G GP ENL HL DPWHN
Sbjct: 184 NPLNF----EPTLEAKEKELANGRLAMLAFLGFMVQH-GITGKGPFENLLQHLFDPWHNT 238
Query: 239 I 239
I
Sbjct: 239 I 239
>gi|449440798|ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449477217|ref|XP_004154963.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 252
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 117/213 (54%), Gaps = 35/213 (16%)
Query: 44 AMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSK 103
A +W+PG P P YL+GS PGD GFDPL L E PENL Y ++EL++ RWAML V
Sbjct: 51 AKKGEWLPGLPSPMYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAG-- 108
Query: 104 FFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR- 162
+L+PE + A +W G+A Y + T+ VIEF+ +VE +R
Sbjct: 109 ---MLLPEVFTKIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRW 157
Query: 163 -------SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALL 206
+ +DP K+ YPGG F+PL F+ E K KEI NGRLA+L
Sbjct: 158 QDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPT----LEAKEKEIANGRLAML 213
Query: 207 AFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
AF+GF VQ + G GP +NL H++DPWHN I
Sbjct: 214 AFLGFIVQHNV-TGKGPFDNLLQHISDPWHNTI 245
>gi|255547367|ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223546345|gb|EEF47847.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 251
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 130/240 (54%), Gaps = 38/240 (15%)
Query: 20 LSSSKSKFFTAVSLPAAANATSKYAMSA---DWMPGEPRPPYLDGSAPGDFGFDPLRLGE 76
LS S SK V+ +++ + + + A +W+PG P P YL+GS PGD GFDPL L E
Sbjct: 23 LSGSPSKLNREVAFKPMSSSPASFKVEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAE 82
Query: 77 VPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLG 136
PENL+ + ++EL++ RWAML V +L+PE + +W G+ Y
Sbjct: 83 DPENLKWFVQAELVNGRWAMLGVAG-----MLLPEVFTKIGIINVPKW--YDAGKEEYFA 135
Query: 137 TPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFD 179
+ T+ VIEF+ +VE +R S+ +DP K+ YPGG F+
Sbjct: 136 SS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFN 189
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
PL F+ E K KE+ NGRLA+LAF+GF +Q + G GP +NL HL+DPWHN I
Sbjct: 190 PLNFAPT----LEAKEKELANGRLAMLAFLGFVIQHNVT-GKGPFDNLLQHLSDPWHNTI 244
>gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 130/247 (52%), Gaps = 47/247 (19%)
Query: 22 SSKSKFFTA----------VSLPAAA--NATSKYAMSADWMPGEPRPPYLDGSAPGDFGF 69
+SKS+F T V LP+ + N+ A +W+PG P YL+GS PGD GF
Sbjct: 17 ASKSRFLTGAPGKLNKECGVRLPSTSSTNSLKVEAKKGEWLPGLASPAYLNGSLPGDNGF 76
Query: 70 DPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPG 129
DPL L E PENL+ + ++EL++ RWAML V +L+PE + +W
Sbjct: 77 DPLALAEDPENLKWFVQAELVNGRWAMLGVAG-----MLLPEVFTQIGIINVPKW--YDA 129
Query: 130 GQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK--------- 172
G+ Y + T+ VIEF+ +VE +R S+ +DP K+
Sbjct: 130 GKQEYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 183
Query: 173 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 232
YPGG F+PL F+ E K KE+ NGRLA+LAF+GF VQ + G GP +NL HL+
Sbjct: 184 YPGGIFNPLNFAPT----AEAKEKELANGRLAMLAFLGFIVQHNV-TGKGPFDNLLQHLS 238
Query: 233 DPWHNNI 239
DPWHN I
Sbjct: 239 DPWHNTI 245
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 251
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 131/240 (54%), Gaps = 38/240 (15%)
Query: 20 LSSSKSKFFTAVSLPAAANATSKYAMSA---DWMPGEPRPPYLDGSAPGDFGFDPLRLGE 76
L+ + SK +S+ A+++ + + A +W+PG P P YL+GS PGD GFDPL L E
Sbjct: 23 LAGAPSKLNRELSIKPMASSSPSFKVEAKKGEWLPGLPSPSYLNGSLPGDNGFDPLGLAE 82
Query: 77 VPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLG 136
PENL + ++EL++ RWAML V +L+PE + A +W G+A Y
Sbjct: 83 DPENLRWFVQAELVNGRWAMLGVAG-----MLLPEVFTKIGIINAPQW--YDAGKAEYFA 135
Query: 137 TPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFD 179
+ T+ VIEF+ +VE +R + +DP K+ YPGG F+
Sbjct: 136 SS------STLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFN 189
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
PL F+ E K KE+ NGRLA+LAF+GF +Q + G GP +NL H++DPWHN I
Sbjct: 190 PLNFAPT----IEAKEKELANGRLAMLAFLGFVIQHNV-TGKGPFDNLLQHISDPWHNTI 244
>gi|157361232|gb|ABV44672.1| photosystem I light-harvesting complex type 4 protein [Bambusa
oldhamii]
Length = 244
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 127/240 (52%), Gaps = 39/240 (16%)
Query: 21 SSSKSKFFTAVSLPAAANATSKYAM----SADWMPGEPRPPYLDGSAPGDFGFDPLRLGE 76
+S KS F S A+++++ ++ +W+PG P P YL+GS PGD GFDPL L E
Sbjct: 17 ASLKSGFLGHSSRLGRASSSTRRSLRVEAKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAE 76
Query: 77 VPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLG 136
PENL Y ++EL++ RWAML V +L+PE L + A W G++TY
Sbjct: 77 DPENLRWYVQAELVNARWAMLGVAG-----MLLPEVLTKIGIINAPLW--YDAGKSTYFA 129
Query: 137 TPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFD 179
+ T+ VIEF+ +VE +R + +DP K YPG F+
Sbjct: 130 SS------STLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKNYSLPPHECGYPGSVFN 183
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
PL F + E K KE+ NGRLA+LAF+ F VQ G GP ENL HL+DPWHN I
Sbjct: 184 PLNF----EPTLEAKEKELANGRLAMLAFLAFMVQH-GITGKGPFENLLQHLSDPWHNTI 238
>gi|115476576|ref|NP_001061884.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|42407519|dbj|BAD10636.1| putative chlorophyll a/b-binding protein precursor [Oryza sativa
Japonica Group]
gi|113623853|dbj|BAF23798.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|125603526|gb|EAZ42851.1| hypothetical protein OsJ_27444 [Oryza sativa Japonica Group]
gi|215695363|dbj|BAG90554.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737533|dbj|BAG96663.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737603|dbj|BAG96733.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765675|dbj|BAG87372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 244
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 134/256 (52%), Gaps = 41/256 (16%)
Query: 7 MSCGIATTAFPSVLSSS--KSKFFTAVSLPAAANATSKYAMSAD----WMPGEPRPPYLD 60
M+ A T ++ SS+ KS F S A T++ + A+ W+PG P P YL+
Sbjct: 1 MASVTARTPVAALRSSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPSPTYLN 60
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQ 120
GS PGD GFDPL L E PENL + ++EL++ RWAML V +L+PE L +
Sbjct: 61 GSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAG-----MLLPEVLTKIGLID 115
Query: 121 AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK 172
A +W G+ATY + T+ VIEF+ +VE +R + +DP K
Sbjct: 116 APQW--YDAGKATYFASS------STLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKS 167
Query: 173 ---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
YPG F+PL F + E K KE+ NGRLA+LAF+GF VQ + GP
Sbjct: 168 YSLPPHECGYPGSVFNPLNF----EPTLEAKEKELANGRLAMLAFLGFLVQHNVTQ-KGP 222
Query: 224 LENLATHLADPWHNNI 239
+NL HL+DPWHN I
Sbjct: 223 FDNLLQHLSDPWHNTI 238
>gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 251
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 129/241 (53%), Gaps = 39/241 (16%)
Query: 20 LSSSKSKFFTAVSL-PAAANATSKYAMSA---DWMPGEPRPPYLDGSAPGDFGFDPLRLG 75
L+ S K VS P+ +++ + + + A W+PG P YLDGS PGD GFDPL L
Sbjct: 23 LTGSSGKLNREVSFRPSTSSSYNSFKVEAKKGQWLPGLASPDYLDGSLPGDNGFDPLGLA 82
Query: 76 EVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYL 135
E PENL+ + ++EL++ RWAML V +L+PE + +W G++ Y
Sbjct: 83 EDPENLKWFIQAELVNGRWAMLGVAG-----MLLPEVFTSIGILNVPKW--YDAGKSEYF 135
Query: 136 GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD---------PEKKKYPGGAF 178
+ T+ VIEF+ +VE +R S+ +D P K YPGG F
Sbjct: 136 ASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPNKCGYPGGIF 189
Query: 179 DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
+PL F+ EE K KE+ NGRLA+LAF+GF VQ + G GP +NL HL DPWHN
Sbjct: 190 NPLNFAPT----EEAKEKELANGRLAMLAFLGFIVQHNV-TGKGPFDNLLQHLFDPWHNT 244
Query: 239 I 239
I
Sbjct: 245 I 245
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 109/195 (55%), Gaps = 14/195 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL G PGD+GFDP L + P + ++Y+ ELIH RWAML +KF
Sbjct: 78 PEYLTGEVPGDYGFDPFGLSKKPADFDKYQAYELIHARWAMLGAAGFVIPEAFNKFGAQC 137
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDP 168
PEA+ W + + GG Y G +P + +L E + + E+ RS+
Sbjct: 138 GPEAV----WFKTGALL-LDGGTLNYFGANIPINLVLAVLA-EVILVGGAEYYRSINNLG 191
Query: 169 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
+ +PGG FDPLG +KDP F KVKEIKNGRLA+ A +GF +Q A G GP+ENL
Sbjct: 192 LDRLHPGGPFDPLGLAKDPDNFALLKVKEIKNGRLAMFAMLGFFIQAYA-TGEGPVENLT 250
Query: 229 THLADPWHNNIGDVI 243
THL+DP+ NN+ VI
Sbjct: 251 THLSDPFGNNLLSVI 265
>gi|13877547|gb|AAK43851.1|AF370474_1 chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|23198310|gb|AAN15682.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 124/238 (52%), Gaps = 53/238 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W PG P +LDGS GD+GFDP LG+ E L+
Sbjct: 58 WYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAA 117
Query: 83 -----------------RYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
R++E ELIH RWAMLA + + L E L W A +
Sbjct: 118 DAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGA-----LSVEWLTGVTWQDAGKVE 172
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFS 184
V G ++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPL +
Sbjct: 173 LVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLSLA 229
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDV 242
DP+K + ++ EIK+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 230 ADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDT 286
>gi|224285766|gb|ACN40598.1| unknown [Picea sitchensis]
Length = 251
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 126/250 (50%), Gaps = 46/250 (18%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATS-----------KYAMSADWMPGEPRPPYLDGSAPGD 66
S S +S F T S+ A K +W+PG P YL+GS PGD
Sbjct: 13 SCRSVCRSGFLTGSSVSRLARRVRPGSNPAPARSFKVEAKGEWLPGLSSPTYLNGSLPGD 72
Query: 67 FGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAA 126
GFDPL L E P++L+ Y ++EL++ RWAML V +L+PE L ++ +W
Sbjct: 73 NGFDPLGLAEDPDSLKWYVQAELVNGRWAMLGVAG-----MLIPEVLTSFGFIDVPKW-- 125
Query: 127 VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK------ 172
G+ Y + T+ VIEF+ +VE +R S+ +DP K
Sbjct: 126 YDAGKVEYFASS------STLFVIEFILFHYVELRRWQDIKYPGSVNQDPVFKNYSLPPN 179
Query: 173 ---YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 229
YPGG F+PL FS E K KE+ NGRLA+LAF+GF VQ + G GP ENL
Sbjct: 180 EVGYPGGIFNPLNFSPS----MEAKEKELANGRLAMLAFLGFVVQHNV-TGKGPFENLLQ 234
Query: 230 HLADPWHNNI 239
HL+DPWHN I
Sbjct: 235 HLSDPWHNTI 244
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 113/200 (56%), Gaps = 19/200 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL G PGD+G+DP L + PE+ +RY+ ELIH RWAML +KF +
Sbjct: 68 PAYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWAMLGAAGFVLPEAFNKFGAVC 127
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKD- 167
PEA+ W + + G Y G VP L ++ E + + E+ RS KD
Sbjct: 128 GPEAV----WWKTGALL-LEGDSIKYFGATVPI-NLAAAVIAEVILVGGAEYYRSTNKDV 181
Query: 168 ----PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
+ +PGGAFDPLG +KDP +F KVKEIKNGRLA+ + +GF V Q+ G GP
Sbjct: 182 YGLQDLDRLHPGGAFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFV-QAYVTGEGP 240
Query: 224 LENLATHLADPWHNNIGDVI 243
+ENLA HL+DP+ NN+ VI
Sbjct: 241 VENLAAHLSDPFGNNLLTVI 260
>gi|125561654|gb|EAZ07102.1| hypothetical protein OsI_29351 [Oryza sativa Indica Group]
Length = 244
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/240 (39%), Positives = 127/240 (52%), Gaps = 39/240 (16%)
Query: 21 SSSKSKFFTAVSLPAAANATSKYAMSAD----WMPGEPRPPYLDGSAPGDFGFDPLRLGE 76
+S KS F S A T++ + A+ W+PG P P YL+GS PGD GFDPL L E
Sbjct: 17 ASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPSPTYLNGSLPGDNGFDPLGLAE 76
Query: 77 VPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLG 136
PENL + ++EL++ RWAML V +L+PE L + A +W G+ATY
Sbjct: 77 DPENLRWFVQAELVNGRWAMLGVAG-----MLLPEVLTKIGLIDAPQW--YDAGKATYFA 129
Query: 137 TPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFD 179
+ T+ VIEF+ +VE +R + +DP K YPG F+
Sbjct: 130 SS------STLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSYSLPPHECGYPGSVFN 183
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
PL F + E K KE+ NGRLA+LAF+GF VQ + GP +NL HL+DPWHN I
Sbjct: 184 PLNF----EPTLEAKEKELANGRLAMLAFLGFLVQHNVT-QKGPFDNLLQHLSDPWHNTI 238
>gi|326487922|dbj|BAJ89800.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493860|dbj|BAJ85392.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 114/212 (53%), Gaps = 35/212 (16%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W+PG P YLDGS GD GFDPL L E PE+L + ++EL++ RWAML V +L
Sbjct: 49 WLPGLQSPAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAG-----ML 103
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
+PE L + A EW G+ TY + T+ VIEF+ +VE +R
Sbjct: 104 IPEVLTKAGLLNAPEW--YDAGKETYFASS------STLFVIEFILFHYVEIRRWQDIKN 155
Query: 163 --SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGF 211
S+ +DP K YPG F+PL F+ E K KE+ NGRLA+LAF+GF
Sbjct: 156 PGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAPT----LENKEKELANGRLAMLAFLGF 211
Query: 212 CVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
VQ + G GP ENL HLADPWHN I I
Sbjct: 212 LVQHNV-TGKGPFENLQQHLADPWHNTIIQTI 242
>gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 251
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/254 (39%), Positives = 135/254 (53%), Gaps = 42/254 (16%)
Query: 7 MSC-GIATTAFPSVLSSSKSKFFTAV---SLPAAANATSKYAMSADWMPGEPRPPYLDGS 62
+SC + +AF + SS S+ V S PA A + K +W+PG P YL+GS
Sbjct: 12 VSCPSVCRSAF--LTGSSVSRLARRVRPGSNPAPARSF-KVEAKGEWLPGLSSPSYLNGS 68
Query: 63 APGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQ 122
PGD GFDPL L E PE+L+ Y ++EL++ RWAML V +L+PE L +
Sbjct: 69 LPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAG-----MLIPEVLTSIGLINVP 123
Query: 123 EWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK-- 172
+W G+ Y + T+ VIEF+ +VE +R S+ +DP K+
Sbjct: 124 KW--YDAGKVEYFASS------STLFVIEFILFHYVELRRWQDIKYPGSVNQDPLFKQYS 175
Query: 173 -------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
YPGG F+PL FS E K KE+ NGRLA+LAF+GF VQ + G GP +
Sbjct: 176 LPPNEVGYPGGIFNPLNFSPS----MEAKEKELANGRLAMLAFLGFVVQHNV-TGKGPFD 230
Query: 226 NLATHLADPWHNNI 239
NL HL+DPWHN I
Sbjct: 231 NLLQHLSDPWHNTI 244
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 113/196 (57%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL+G PGD+G+DP L + PEN ++Y+ ELIH RWAML +KF
Sbjct: 105 PEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYC 164
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + GG +Y G + + + V E + + E+ R+ D
Sbjct: 165 GPEAV----WFKTGALL-LDGGTLSYFGASIHINLIAAV-VAEVILVGGAEYYRATNGLD 218
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG +KDP +F KVKEIKNGRLA+ + +GF V Q+ G GP+ENL
Sbjct: 219 FEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFV-QAYVTGEGPVENL 277
Query: 228 ATHLADPWHNNIGDVI 243
A HL+DP+ NN+ V+
Sbjct: 278 AAHLSDPFGNNLLTVL 293
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/251 (37%), Positives = 128/251 (50%), Gaps = 47/251 (18%)
Query: 22 SSKSKFFTAVSLPAAANATSK------------YAMSADWMPGEPRPPYLDGSAPGDFGF 69
+SKS+F T S T + A +W+PG P YL+G+ PGD GF
Sbjct: 17 ASKSRFLTGSSGKLNREVTMRPMGCPPSASFKVEAKKGEWLPGLASPTYLNGTLPGDNGF 76
Query: 70 DPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPG 129
DPL L E PENL Y ++EL++ RWAML V +L+PE + A +W
Sbjct: 77 DPLGLAEDPENLRWYVQAELVNGRWAMLGVAG-----MLLPEVFTKIGIINAPQW--YDA 129
Query: 130 GQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK--------- 172
G++ Y + T+ VIEF+ +VE +R S+ +DP K+
Sbjct: 130 GKSEYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPQHECG 183
Query: 173 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 232
YPG F+PL F+ E K KE+ NGRLA+LAF+GF VQ + G GP ENL HL+
Sbjct: 184 YPGSVFNPLNFAPT----LEAKEKELANGRLAMLAFLGFIVQHNV-TGKGPFENLLQHLS 238
Query: 233 DPWHNNIGDVI 243
DPWHN I + I
Sbjct: 239 DPWHNTIINTI 249
>gi|302762032|ref|XP_002964438.1| light-harvesting complex [Selaginella moellendorffii]
gi|300168167|gb|EFJ34771.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/260 (39%), Positives = 135/260 (51%), Gaps = 40/260 (15%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAAN-ATSKYAMSA---DWMPGEPRP 56
MA++T M I + + LS S SK AA + AT K+ + A +W PG P
Sbjct: 1 MAAST-MQASIGVSCPSTFLSRSSSKLQRGSRAVAAPSFATGKFKVEAKKGEWCPGLASP 59
Query: 57 PYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLG 116
YL+GS PGD GFDPL L P NL+ Y ++EL + RWAM+ V +L+PE L
Sbjct: 60 GYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAG-----MLIPEVLTKI 114
Query: 117 NWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD- 167
+ A W G+ Y T+ VIEFL +VE +R S+ +D
Sbjct: 115 GVINAPLW--YDAGKVEYFAPA------STLFVIEFLMFHYVEVRRWQDIKYPGSVNQDP 166
Query: 168 --------PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
P + YPGG F+PL F + EEYK KE+ NGRLA+LAF+GF + QS
Sbjct: 167 IFKGYSLPPNEVGYPGGIFNPLNFPAN----EEYKEKELANGRLAMLAFLGFII-QSNVT 221
Query: 220 GTGPLENLATHLADPWHNNI 239
GP ENL THL+DPWH+ I
Sbjct: 222 HQGPFENLLTHLSDPWHHTI 241
>gi|302787172|ref|XP_002975356.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156930|gb|EFJ23557.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/260 (39%), Positives = 134/260 (51%), Gaps = 40/260 (15%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKF---FTAVSLPAAANATSKY-AMSADWMPGEPRP 56
MA++T M I + + LS S SK AV+ P+ A K A +W PG P
Sbjct: 1 MAAST-MQASIGVSCPSTFLSGSSSKLQRGSRAVAAPSFATGKFKVEAKKGEWCPGLASP 59
Query: 57 PYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLG 116
YL+GS PGD GFDPL L P NL+ Y ++EL + RWAM+ V +L+PE L
Sbjct: 60 GYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAG-----MLIPEVLTKI 114
Query: 117 NWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD- 167
+ A W G+ Y T+ VIEFL +VE +R S+ +D
Sbjct: 115 GVINAPLW--YDAGKVEYFAPA------STLFVIEFLMFHYVEVRRWQDIKYPGSVNQDP 166
Query: 168 --------PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
P + YPGG F+PL F + EEYK KE+ NGRLA+LAF+GF + QS
Sbjct: 167 IFKGYSLPPNEVGYPGGIFNPLNFPAN----EEYKEKELANGRLAMLAFLGFII-QSNVT 221
Query: 220 GTGPLENLATHLADPWHNNI 239
GP ENL THL+DPWH+ I
Sbjct: 222 HQGPFENLLTHLSDPWHHTI 241
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 113/211 (53%), Gaps = 34/211 (16%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P +LDGS PGDFGFDPL LG PE L+ + ++EL+HCRWAML I
Sbjct: 5 WFPGSKAPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAG-----IF 59
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
+PEAL + W G Y P T+ VIE + A+ E +R
Sbjct: 60 IPEALTKAGILNTPSWNVA--GDQQYFADPT------TLFVIELILFAWAEGRRWADIVN 111
Query: 163 --SMEKDP---------EKKKYPGGA-FDPLGF--SKDPQKFEEYKVKEIKNGRLALLAF 208
+ DP YPGG FDPLG+ +KD +K +E + KEIKNGRLA+LA
Sbjct: 112 PGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTKDAKKLKELRTKEIKNGRLAMLAV 171
Query: 209 VGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+G V Q+ Y TGP++NL HLADP HN I
Sbjct: 172 LG-AVVQANYTHTGPIDNLLAHLADPGHNTI 201
>gi|9624495|gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precursor [Hordeum vulgare]
Length = 228
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 123/243 (50%), Gaps = 38/243 (15%)
Query: 21 SSSKSKFFTAVSLPAAANATSK---YAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77
S+S +F A +T + W+PG P YLDGS GD GFDPL L E
Sbjct: 1 SASSPRFLGDSGRVGLAKSTRRDVAVQAKGSWLPGLQSPAYLDGSLAGDNGFDPLALAED 60
Query: 78 PENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGT 137
PE+L + ++EL++ RWAML V +L+PE L + A EW G+ TY +
Sbjct: 61 PEDLRWFVQAELVNGRWAMLGVAG-----MLIPEVLTKAGLLNAPEW--YDAGKETYFAS 113
Query: 138 PVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFDP 180
T+ VIEF+ +VE +R S+ +DP K YPG F+P
Sbjct: 114 S------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGSVFNP 167
Query: 181 LGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 240
L F+ E K KE+ NGRLA+LAF+GF VQ + G GP ENL HLADPWHN I
Sbjct: 168 LNFAPT----LENKEKELANGRLAMLAFLGFLVQHNV-TGKGPFENLQQHLADPWHNTII 222
Query: 241 DVI 243
I
Sbjct: 223 QTI 225
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 113/199 (56%), Gaps = 18/199 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL G PGD+G+DP L + PE+ +RY+ ELIH RWAML +KF +
Sbjct: 26 PEYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWAMLGAAGFVLPEAFNKFGAVC 85
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDP 168
PEA+ W + + G Y G VP L ++ E + + E+ RS K P
Sbjct: 86 GPEAV----WWKTGALL-LEGDSIKYFGATVPL-NLAAAVIAEVILVGGAEYYRSTNKSP 139
Query: 169 E----KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
+ +PGGAFDPLG +KDP +F KVKEIKNGRLA+ + +GF V Q+ G GP+
Sbjct: 140 LGSDLDRLHPGGAFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFV-QAYVTGEGPV 198
Query: 225 ENLATHLADPWHNNIGDVI 243
ENL+ HL+DP+ NN+ VI
Sbjct: 199 ENLSAHLSDPFGNNLLTVI 217
>gi|195628270|gb|ACG35965.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 117/217 (53%), Gaps = 35/217 (16%)
Query: 40 TSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV 99
+ K +W+PG P P YLDGS GD GFDPL L E PENL + ++EL++ RWAML V
Sbjct: 43 SXKAEAKGEWLPGLPSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGV 102
Query: 100 VSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVE 159
+L+PE L + A +W G++ Y + T+ V+EF+ +VE
Sbjct: 103 AG-----MLIPEVLTKAGLINAPQW--YDAGKSEYFASS------STLFVVEFILFXYVE 149
Query: 160 HQR--------SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGR 202
+R S+ +DP K YPG F+PL F+ E K KE+ NGR
Sbjct: 150 IRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAPT----LEAKEKELANGR 205
Query: 203 LALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
LA+LAF+GF +Q + G GP +NL HL+DPWHN I
Sbjct: 206 LAMLAFLGFLIQHNVT-GKGPFDNLLQHLSDPWHNTI 241
>gi|302807871|ref|XP_002985629.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146538|gb|EFJ13207.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 122/240 (50%), Gaps = 54/240 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDPL LG+ P
Sbjct: 67 WFPGAKCPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGELLGERVEDL 126
Query: 80 ---------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEW 124
L+R++E ELIH RWAMLA + + I V G+ W A +
Sbjct: 127 STIRATPLQPYTEIFGLQRFRECELIHGRWAMLATLGA----IAVETFTGV-TWQDAGKV 181
Query: 125 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGF 183
G +Y G +P+ T+ ++ IE L I F+E QR+ E DPEK+ YPGG+ FDPLG
Sbjct: 182 ELDQG--PSYFGFSLPF-TITALVWIEVLVIGFIEFQRNTELDPEKRLYPGGSYFDPLGL 238
Query: 184 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
+ DP++ E K+ EIK+ RLA++A GF VQ +A G GPL+N THL+DP H I D
Sbjct: 239 AADPERKEVLKLAEIKHARLAMVAAFGFAVQAAA-TGKGPLDNWVTHLSDPLHTTIIDTF 297
>gi|302784975|ref|XP_002974259.1| light-harvesting complex [Selaginella moellendorffii]
gi|300157857|gb|EFJ24481.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 122/240 (50%), Gaps = 54/240 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDPL LG+ P
Sbjct: 67 WFPGAKCPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGELLGERVEDL 126
Query: 80 ---------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEW 124
L+R++E ELIH RWAMLA + + I V G+ W A +
Sbjct: 127 STIRATPLQPYTEIFGLQRFRECELIHGRWAMLATLGA----IAVETFTGV-TWQDAGKV 181
Query: 125 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGF 183
G +Y G +P+ T+ ++ IE L I F+E QR+ E DPEK+ YPGG+ FDPLG
Sbjct: 182 ELDQG--PSYFGFSLPF-TITALVWIEVLVIGFIEFQRNTELDPEKRLYPGGSYFDPLGL 238
Query: 184 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
+ DP++ E K+ EIK+ RLA++A GF VQ +A G GPL+N THL+DP H I D
Sbjct: 239 AADPERKEVLKLAEIKHARLAMVAAFGFAVQAAA-TGKGPLDNWVTHLSDPLHTTIIDTF 297
>gi|194703906|gb|ACF86037.1| unknown [Zea mays]
gi|195613086|gb|ACG28373.1| chlorophyll a-b binding protein 4 [Zea mays]
gi|414870433|tpg|DAA48990.1| TPA: chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 116/215 (53%), Gaps = 35/215 (16%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS 101
K +W+PG P P YLDGS GD GFDPL L E PENL + ++EL++ RWAML V
Sbjct: 45 KAEAKGEWLPGLPSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAG 104
Query: 102 SKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQ 161
+L+PE L + A +W G++ Y + T+ V+EF+ +VE +
Sbjct: 105 -----MLIPEVLTKAGLINAPQW--YDAGKSEYFASS------STLFVVEFILFHYVEIR 151
Query: 162 R--------SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLA 204
R S+ +DP K YPG F+PL F+ E K KE+ NGRLA
Sbjct: 152 RWQDIKNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAPT----LEAKEKELANGRLA 207
Query: 205 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+LAF+GF +Q + G GP +NL HL+DPWHN I
Sbjct: 208 MLAFLGFLIQHNV-TGKGPFDNLLQHLSDPWHNTI 241
>gi|224090986|ref|XP_002309134.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
gi|118489077|gb|ABK96345.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222855110|gb|EEE92657.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
Length = 285
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 123/237 (51%), Gaps = 53/237 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDP LG+ E
Sbjct: 54 WYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNLAGDIIGTRTEFA 113
Query: 80 --------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
L+R++E ELIH RWAMLA + + L E L W A +
Sbjct: 114 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGA-----LSVEWLTGVTWQDAGKVE 168
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFS 184
V G ++YLG P+P+ ++ ++ IE + I ++E QR+ E DPEK+ YPGG F DPLG +
Sbjct: 169 LVEG--SSYLGQPLPF-SITALIWIEAVIIGYIEFQRNAELDPEKRLYPGGQFFDPLGLA 225
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 241
DP+K ++ EIK+ RLA++AF+GF V Q+ G GPL N ATHL+DP H I D
Sbjct: 226 SDPEKKATLQLAEIKHARLAMVAFLGFAV-QAWVTGKGPLNNWATHLSDPLHTTIID 281
>gi|829287|emb|CAA78901.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 244
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 117/215 (54%), Gaps = 35/215 (16%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS 101
K +W+PG P YL+GS PGD GFDPL L E PE+L+ Y ++EL++ RWAML V
Sbjct: 41 KVEAKGEWLPGLSSPSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAG 100
Query: 102 SKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQ 161
+L+PE L + +W G+ Y + T+ VIEF+ +VE +
Sbjct: 101 -----MLIPEVLTSIGLINVPKW--YDAGKVEYFASS------STLFVIEFILFHYVELR 147
Query: 162 R--------SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLA 204
R S+ +DP K+ YPGG F+PL FS E K KE+ NGRLA
Sbjct: 148 RWQDIKYPGSVNQDPLFKQYSLPPNEVGYPGGIFNPLNFSPS----MEAKEKELANGRLA 203
Query: 205 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+LAF+GF VQ + G GP +NL HL+DPWHN I
Sbjct: 204 MLAFLGFVVQHNV-TGKGPFDNLLQHLSDPWHNTI 237
>gi|388498024|gb|AFK37078.1| unknown [Lotus japonicus]
Length = 252
Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 118/213 (55%), Gaps = 35/213 (16%)
Query: 44 AMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSK 103
A +W+PG P YL+GS PGD GFDPL L E PENL+ + ++EL++ RWA L V
Sbjct: 51 AKKGEWLPGLASPNYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWATLGVAG-- 108
Query: 104 FFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR- 162
+L+PE L + +W G+A Y + T+ VIEF+ +VE +R
Sbjct: 109 ---MLLPEVLTNIGLINVPKW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRW 157
Query: 163 -------SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALL 206
S+ +DP K+ YPGG F+PL F+ EE K +E+ NGRLA+L
Sbjct: 158 QDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----EEAKERELANGRLAML 213
Query: 207 AFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
AF+GF VQ + G GP +NL HL+DPWHN I
Sbjct: 214 AFLGFIVQHNVT-GKGPFDNLLQHLSDPWHNTI 245
>gi|356508545|ref|XP_003523016.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 127/251 (50%), Gaps = 47/251 (18%)
Query: 22 SSKSKFFTAVSLPAAANATSK------------YAMSADWMPGEPRPPYLDGSAPGDFGF 69
+SKS+F T S T + A +W+PG P YL+G+ PGD GF
Sbjct: 17 TSKSRFLTGSSGKLNREVTMRPMGCPPSASFKVEAKKGEWLPGLASPTYLNGTLPGDNGF 76
Query: 70 DPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPG 129
DPL L E PENL Y ++EL++ RWAML V +L+PE + A +W
Sbjct: 77 DPLGLAEDPENLRWYVQAELVNGRWAMLGVAG-----MLLPEVFTKFGIINAPQW--YDA 129
Query: 130 GQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK--------- 172
G++ Y + T+ VIEF+ +VE +R + +DP K+
Sbjct: 130 GKSEYFASS------STLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPHECG 183
Query: 173 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 232
YPG F+PL F+ E K KE+ NGRLA+LAF+GF VQ + G GP ENL HL+
Sbjct: 184 YPGSVFNPLNFAPT----LEAKEKELANGRLAMLAFLGFIVQHNV-TGKGPFENLLQHLS 238
Query: 233 DPWHNNIGDVI 243
DPWHN I + I
Sbjct: 239 DPWHNTIINTI 249
>gi|159476206|ref|XP_001696202.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714515|dbj|BAD06921.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158282427|gb|EDP08179.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 243
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 123/233 (52%), Gaps = 40/233 (17%)
Query: 35 AAANATSKYAM-----SADWMPGEPRPPYLDGSAP----GDFGFDPLRLGEVPENLERYK 85
AA +A+S+ ++ W+PG P +LD A G+FGFDPL LG+ P L Y+
Sbjct: 11 AARSASSRKSVVTCVARQSWLPGSQIPAHLDTPAAQALAGNFGFDPLGLGKDPVALRWYQ 70
Query: 86 ESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLP 145
++ELIHCR AM V IL+P L + EW G+ + PWG+L
Sbjct: 71 QAELIHCRTAMAGVAG-----ILIPGLLTKAGALNVPEW--YDAGKVAIENSFAPWGSL- 122
Query: 146 TILVIEFLSIAFVEHQRSME--------------------KDPEKKKYPGGAFDPLGFSK 185
L ++ FVE +R + K + YPGG FDPLG SK
Sbjct: 123 --LAVQLFLCGFVEAKRWQDIRKPGSQGEPGSFLGFEASLKGTSELGYPGGPFDPLGLSK 180
Query: 186 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
+ K+ ++K+KE+KNGRLA+LAF+GF Q+ A G GP++NLA HL DPWH N
Sbjct: 181 EADKWADWKLKEVKNGRLAMLAFLGFVAQKYA-TGAGPVDNLAAHLKDPWHVN 232
>gi|125561651|gb|EAZ07099.1| hypothetical protein OsI_29348 [Oryza sativa Indica Group]
Length = 244
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 95/240 (39%), Positives = 126/240 (52%), Gaps = 39/240 (16%)
Query: 21 SSSKSKFFTAVSLPAAANATSKYAMSAD----WMPGEPRPPYLDGSAPGDFGFDPLRLGE 76
+S KS F S A T++ + A+ W+PG P P YL+GS PGD GFDPL L E
Sbjct: 17 ASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPSPTYLNGSLPGDNGFDPLGLAE 76
Query: 77 VPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLG 136
PENL + ++EL++ RWAML V +L+PE L + A +W G+ATY
Sbjct: 77 DPENLRWFVQAELVNGRWAMLGVAG-----MLLPEVLTKIGLIDAPQW--YDAGKATYFA 129
Query: 137 TPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFD 179
+ T+ VIEF+ VE +R + +DP K YPG F+
Sbjct: 130 SS------STLFVIEFILFHSVEIRRWQDIKNPGCVNQDPIFKSYSLPPHECGYPGSVFN 183
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
PL F + E K KE+ NGRLA+LAF+GF VQ + GP +NL HL+DPWHN I
Sbjct: 184 PLNF----EPTLEAKEKELANGRLAMLAFLGFLVQHNVT-QKGPFDNLLQHLSDPWHNTI 238
>gi|297819360|ref|XP_002877563.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323401|gb|EFH53822.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 252
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 129/250 (51%), Gaps = 40/250 (16%)
Query: 12 ATTAFPSVLSSSKSKF-----FTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGD 66
TT+ P L+SS + F ++ + ++ A +W+PG P YL GS GD
Sbjct: 16 CTTSKPRFLTSSSGRLNRDLTFKSIGSSSKTSSFKVEAKKGEWLPGLASPDYLTGSLAGD 75
Query: 67 FGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAA 126
GFDPL L E PENL+ + ++EL++ RWAML V +L+PE + EW
Sbjct: 76 NGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAG-----MLLPEVFTKLGIINVPEW-- 128
Query: 127 VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK------ 172
G+ Y + T+ VIEF+ +VE +R S+ +DP K+
Sbjct: 129 YDAGKEQYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKG 182
Query: 173 ---YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 229
YPGG F+PL F+ E K KEI NGRLA+LAF+GF VQ + G GP ENL
Sbjct: 183 EVGYPGGIFNPLNFAPT----LEAKEKEIANGRLAMLAFLGFVVQHNV-TGKGPFENLLQ 237
Query: 230 HLADPWHNNI 239
HL+DPWHN I
Sbjct: 238 HLSDPWHNTI 247
>gi|312281571|dbj|BAJ33651.1| unnamed protein product [Thellungiella halophila]
Length = 251
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 132/248 (53%), Gaps = 40/248 (16%)
Query: 14 TAFPSVLSSSKSKFFTAVSLPA--AANATSKYAMSA---DWMPGEPRPPYLDGSAPGDFG 68
T+ P L+ S + +S + +++ T+ + + A +W+PG P YL+GS GD G
Sbjct: 17 TSKPRFLTGSSGRLNRELSFKSIGSSSKTASFKVEAKKGEWLPGLASPGYLNGSLAGDNG 76
Query: 69 FDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVP 128
FDPL L E PENL+ + ++EL++ RWAML V +L+PE + EW
Sbjct: 77 FDPLGLAEDPENLKWFVQAELVNGRWAMLGVAG-----MLLPEVFTKIGIINVPEW--YD 129
Query: 129 GGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK-------- 172
G+ Y + T+ VIEF+ +VE +R S+ +DP K+
Sbjct: 130 AGKEQYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEV 183
Query: 173 -YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 231
YPGG F+PL F+ E K KE+ NGRLA+LAF+GF +Q + G GP ENL HL
Sbjct: 184 GYPGGIFNPLNFAPTV----EAKEKELANGRLAMLAFLGFVIQHNV-TGKGPFENLLQHL 238
Query: 232 ADPWHNNI 239
+DPWHN I
Sbjct: 239 SDPWHNTI 246
>gi|307103837|gb|EFN52094.1| hypothetical protein CHLNCDRAFT_32710 [Chlorella variabilis]
Length = 264
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/251 (41%), Positives = 128/251 (50%), Gaps = 39/251 (15%)
Query: 12 ATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDP 71
A TA +KS T+ S A N + S W PG P YLDG+ GD+GFDP
Sbjct: 6 AKTALAGTRVVAKS---TSRSSARAGNVVVRAERSL-WAPGVASPKYLDGNLAGDYGFDP 61
Query: 72 LRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEW--AAVPG 129
+ LG PE L Y+++EL + RWAML V I+ PE Q W A +P
Sbjct: 62 MGLGANPERLTWYRQAELQNARWAMLGVAGILGQEIINPE----------QWWYSAGMPE 111
Query: 130 GQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKK 172
++ G V G IL EFL + FVE +R S+ DP +
Sbjct: 112 NLPSFDGNKVNMG---GILAWEFLLMHFVEVRRWQDIRKKDSVNADPFNPNLKVPNPEMG 168
Query: 173 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 232
YPGG FDPLGFSK F+E + KEIKNGRLA++AFV F +Q A G GPL NL HLA
Sbjct: 169 YPGGPFDPLGFSKG--NFKEVQTKEIKNGRLAMVAFVAFTIQAQAT-GKGPLANLTDHLA 225
Query: 233 DPWHNNIGDVI 243
P+ NN+G I
Sbjct: 226 SPFSNNVGANI 236
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 127/253 (50%), Gaps = 39/253 (15%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPL 72
+ LS K K T + P A +T+ +A+ W PG PP+LDGS PGDFGFDPL
Sbjct: 32 AFLSGRKLKVNT-FTAPVGARSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPL 90
Query: 73 RLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQA 132
L PE+L ++EL+HCRWAML I +PE L + W G Q
Sbjct: 91 GLSSDPESLRWNVQAELVHCRWAMLGAAG-----IFIPEFLTKIGILNTPSWYTA-GEQE 144
Query: 133 TYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPG 175
+ T T+ ++E + I + E +R S+ DP YPG
Sbjct: 145 YFTDT-------TTLFIVELIFIGWAEGRRWADILKPGSVNTDPIFPNNKLTGTDVGYPG 197
Query: 176 GA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 233
G FDPLG+ S PQK +E + KEIKNGRLA+LA +G Q Y GTGP++NL HLAD
Sbjct: 198 GLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLAD 256
Query: 234 PWHNNIGDVIIPR 246
P H + P+
Sbjct: 257 PGHATVFAAFTPK 269
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 122/251 (48%), Gaps = 36/251 (14%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRL 74
S L K + T S AA + T A D W PG PP+LDGS PGDFGFDPL L
Sbjct: 33 SFLRGEKLRLRTYTSPTAARSVTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL 92
Query: 75 GEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATY 134
G PE L ++EL+HCRWAML I +PE L + W + G+ Y
Sbjct: 93 GSDPETLRWNVQAELVHCRWAMLGAAG-----IFIPEFLTKIGILNTPSWYSA--GEVEY 145
Query: 135 LGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA 177
T+ ++E I + E +R + DP YPGG
Sbjct: 146 FTDTT------TLFIVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGL 199
Query: 178 -FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPW 235
FDPLG+ S P+K +E + KEIKNGRLA+LA +G Q Y GTGP++NL HLADP
Sbjct: 200 WFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPG 258
Query: 236 HNNIGDVIIPR 246
H + P+
Sbjct: 259 HATVFAAFTPK 269
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 122/251 (48%), Gaps = 36/251 (14%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRL 74
S L K + T S AA + T A D W PG PP+LDGS PGDFGFDPL L
Sbjct: 33 SFLRGKKLRLRTYTSPTAARSVTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL 92
Query: 75 GEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATY 134
G PE L ++EL+HCRWAML I +PE L + W + G+ Y
Sbjct: 93 GSDPETLRWNVQAELVHCRWAMLGAAG-----IFIPEFLTKIGILNTPSWYSA--GEVEY 145
Query: 135 LGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA 177
T+ ++E I + E +R + DP YPGG
Sbjct: 146 FTDTT------TLFIVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGL 199
Query: 178 -FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPW 235
FDPLG+ S P+K +E + KEIKNGRLA+LA +G Q Y GTGP++NL HLADP
Sbjct: 200 WFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPG 258
Query: 236 HNNIGDVIIPR 246
H + P+
Sbjct: 259 HATVFAAFTPK 269
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 127/260 (48%), Gaps = 45/260 (17%)
Query: 18 SVLSSSKSKFFTAVSL-------PAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPG 65
S+L S+K+ F + L P A +++ A+ W PG PP+LDGS PG
Sbjct: 25 SLLGSTKASFLSGRKLKVNSFTAPVGARSSTTVCAVAEPDRPLWFPGSTPPPWLDGSLPG 84
Query: 66 DFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
DFGFDPL LG PE+L ++EL+HCRWAML I +PE L + W
Sbjct: 85 DFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAG-----IFIPEFLTKIGILNTPSWY 139
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP--------- 168
G+ Y T+ V+E I + E +R + DP
Sbjct: 140 TA--GELEYFTDTT------TLFVVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG 191
Query: 169 EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
YPGG FDPLG+ S P+K +E + KEIKNGRLA+LA +G Q Y GTGP++N
Sbjct: 192 TDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDN 250
Query: 227 LATHLADPWHNNIGDVIIPR 246
L HLADP H I P+
Sbjct: 251 LFAHLADPGHATIFAAFTPK 270
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 127/260 (48%), Gaps = 45/260 (17%)
Query: 18 SVLSSSKSKFFTAVSL-------PAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPG 65
S+L S+K+ F + L P A +++ A+ W PG PP+LDGS PG
Sbjct: 36 SLLGSTKASFLSGRKLKVNSFTAPVGARSSTTVCAVAEPDRPLWFPGSTPPPWLDGSLPG 95
Query: 66 DFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
DFGFDPL LG PE+L ++EL+HCRWAML I +PE L + W
Sbjct: 96 DFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAG-----IFIPEFLTKIGILNTPSWY 150
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP--------- 168
G+ Y T+ V+E I + E +R + DP
Sbjct: 151 TA--GELEYFTDTT------TLFVVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG 202
Query: 169 EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
YPGG FDPLG+ S P+K +E + KEIKNGRLA+LA +G Q Y GTGP++N
Sbjct: 203 TDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDN 261
Query: 227 LATHLADPWHNNIGDVIIPR 246
L HLADP H I P+
Sbjct: 262 LFAHLADPGHATIFAAFTPK 281
>gi|15081739|gb|AAK82524.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
Length = 290
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 123/238 (51%), Gaps = 53/238 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W PG P +LDGS GD+GFDP LG+ E L+
Sbjct: 58 WYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAA 117
Query: 83 -----------------RYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
R++E ELIH RWAMLA + + L E L W A +
Sbjct: 118 DAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGA-----LSVEWLTGVTWQDAGKVE 172
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFS 184
V G ++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG +
Sbjct: 173 LVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLA 229
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDV 242
DP+K + ++ EIK+ RLA++AF+GF VQ +A G GP ATHL+DP H I D
Sbjct: 230 ADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPRNYWATHLSDPLHTTIIDT 286
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/262 (37%), Positives = 130/262 (49%), Gaps = 38/262 (14%)
Query: 4 NTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSA 63
N L + G T S L + ++K A + P+ A ++ W PG PP+LDGS
Sbjct: 20 NGLAAAGART----SFLGAGRTKLREAAARPSFA-VSAAAPDRPIWFPGSVPPPWLDGSL 74
Query: 64 PGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQE 123
PGDFGFDP LG PE+L ++EL+HCRWAML I +PE L +
Sbjct: 75 PGDFGFDPFGLGSDPESLRWNVQAELVHCRWAMLGAAG-----IFIPEFLTKIGILSTPS 129
Query: 124 WAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP------- 168
W G+ Y T+ +IE + I + E +R + DP
Sbjct: 130 WYTA--GEQQYFTDTT------TLFIIELILIGWAEGRRWADIIKPGCVNTDPIFPNNKL 181
Query: 169 --EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
YPGG FDPLG+ S P+K +E + KEIKNGRLA+LA +G Q+ Y GTGP+
Sbjct: 182 TGTDVGYPGGLWFDPLGWGSGSPEKLKELRTKEIKNGRLAMLAVMGAWF-QAEYTGTGPI 240
Query: 225 ENLATHLADPWHNNIGDVIIPR 246
+NL HLADP H NI P+
Sbjct: 241 DNLFAHLADPGHANIFQAFTPK 262
>gi|357158365|ref|XP_003578105.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 246
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 123/245 (50%), Gaps = 38/245 (15%)
Query: 12 ATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDP 71
A++ P L S + A SL A W+PG P YLDGS GD GFDP
Sbjct: 17 ASSPSPRFLGDSGRQLGLAKSL---ARRDVAVQAKGQWLPGLASPAYLDGSLAGDNGFDP 73
Query: 72 LRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQ 131
L L E P +L + ++EL++ RWAML V +L+PE L + A EW G+
Sbjct: 74 LALAEDPADLRWFVQAELVNGRWAMLGVAG-----MLIPELLTKAGLLSAPEW--YDAGK 126
Query: 132 ATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YP 174
TY + T+ V+EF+ +VE +R S+ +DP K YP
Sbjct: 127 ETYFASS------STLFVVEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPDHDCGYP 180
Query: 175 GGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADP 234
G F+PL F+ E K KE+ NGRLA+LAF+GF VQ + G GP ENL HLADP
Sbjct: 181 GSVFNPLNFAPT----LENKEKELANGRLAMLAFLGFLVQHNV-TGKGPFENLMQHLADP 235
Query: 235 WHNNI 239
WHN I
Sbjct: 236 WHNTI 240
>gi|27542569|gb|AAO16495.1| light-harvesting complex I protein [Chlamydomonas reinhardtii]
Length = 241
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 129/242 (53%), Gaps = 34/242 (14%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77
S+++ ++ F+A P A A + A+ W PG P P +LDGS GD+GFDPL LG+
Sbjct: 4 SMIAQRRAGAFSARQAPRAVRAQA--AVRPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQE 61
Query: 78 PENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGT 137
P+ L+ Y ++EL+H R+AML I LG W A G+
Sbjct: 62 PQTLKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGFPEWYDA--------GKVVVEKN 113
Query: 138 PVPWGTLPTILVIEFLSIAFVEHQRSME-KDPEKKK-----------------YPGGA-F 178
+ PT++VI+F + + E +R + K+P + YPGG F
Sbjct: 114 NI---DFPTLMVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGLENGYPGGRFF 170
Query: 179 DPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 237
DP+G S+ D K++EYK KE+KNGRLA++A +GF Q +A G GPL+NLA HLADP H
Sbjct: 171 DPMGLSRGDAAKYQEYKQKEVKNGRLAMIACLGFAAQYAA-TGKGPLDNLADHLADPNHV 229
Query: 238 NI 239
N
Sbjct: 230 NF 231
>gi|226498298|ref|NP_001150371.1| LOC100284001 [Zea mays]
gi|195638726|gb|ACG38831.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 115/215 (53%), Gaps = 35/215 (16%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS 101
K +W+PG P P YLDGS GD GFDPL L E PENL + ++EL++ RWAML V
Sbjct: 45 KAEAKGEWLPGLPSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAG 104
Query: 102 SKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQ 161
+L+PE L + A +W ++ Y + T+ V+EF+ +VE +
Sbjct: 105 -----MLIPEVLTKAGLINAPQW--YDASKSEYFASS------STLFVVEFILFHYVEIR 151
Query: 162 R--------SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLA 204
R S+ +DP K YPG F+PL F+ E K KE+ NGRLA
Sbjct: 152 RWQDIKNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAPT----LEAKEKELANGRLA 207
Query: 205 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+LAF+GF +Q + G GP +NL HL+DPWHN I
Sbjct: 208 MLAFLGFLIQHNV-TGKGPFDNLLQHLSDPWHNTI 241
>gi|87313219|gb|ABD37906.1| light-harvesting chlorophyll-a/b binding protein Lhca4
[Chlamydomonas incerta]
Length = 237
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 122/233 (52%), Gaps = 40/233 (17%)
Query: 35 AAANATSKYAM-----SADWMPGEPRPPYLDG----SAPGDFGFDPLRLGEVPENLERYK 85
AA +A+S+ ++ W+PG P +LD + G+FGFDPL LG+ P L Y+
Sbjct: 5 AARSASSRKSVVTCVARQSWLPGSQIPAHLDTPSAQALAGNFGFDPLGLGKDPVALAWYQ 64
Query: 86 ESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLP 145
++ELIHCR AM V IL+P L + EW G+ + PWGTL
Sbjct: 65 QAELIHCRTAMTGVAG-----ILIPGLLTKAGALNVPEW--YDAGKVAIENSFAPWGTL- 116
Query: 146 TILVIEFLSIAFVEHQR--------------------SMEKDPEKKKYPGGAFDPLGFSK 185
L ++ FVE +R S K + YPGG FDPLG SK
Sbjct: 117 --LAVQLFLCGFVEVKRWQDIRKPGSQGEPGSFLGFESSLKGTSEVGYPGGPFDPLGLSK 174
Query: 186 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
+ K+ ++K+KE+KNGRLA+LAF+GF Q+ A G GP++NL HL DPWH N
Sbjct: 175 EADKWADWKLKEVKNGRLAMLAFLGFVAQKYA-TGAGPVDNLVAHLKDPWHVN 226
>gi|40714521|dbj|BAD06924.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 241
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 129/242 (53%), Gaps = 34/242 (14%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77
S+++ ++ F+A P A A + A+ W PG P P +LDGS GD+GFDPL LG+
Sbjct: 4 SMIAQRRAGAFSARQAPRAVRAQA--AVRPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQE 61
Query: 78 PENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGT 137
P+ L+ Y ++EL+H R+AML I LG W A G+
Sbjct: 62 PQTLKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGFPEWYDA--------GKVVVEKN 113
Query: 138 PVPWGTLPTILVIEFLSIAFVEHQRSME-KDPEKKK-----------------YPGGA-F 178
+ PT++VI+F + + E +R + K+P + YPGG F
Sbjct: 114 NI---DFPTLMVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGLENGYPGGRFF 170
Query: 179 DPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 237
DP+G S+ D K++EYK KE+KNGRLA++A +GF Q +A G GPL+NLA HLADP H
Sbjct: 171 DPMGLSRGDAAKYQEYKQKEVKNGRLAMIACLGFAAQYAA-TGKGPLDNLADHLADPNHV 229
Query: 238 NI 239
N
Sbjct: 230 NF 231
>gi|384253051|gb|EIE26526.1| hypothetical protein COCSUDRAFT_52367 [Coccomyxa subellipsoidea
C-169]
Length = 246
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 115/214 (53%), Gaps = 31/214 (14%)
Query: 44 AMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSK 103
A A W+PG P YL G PGDFGFDPLRLGE P L+ Y+++EL + RWAMLA
Sbjct: 36 AERASWLPGSEIPSYLKGELPGDFGFDPLRLGEDPAALKWYQQAELQNGRWAMLAAAGIL 95
Query: 104 FFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR- 162
F +L LG G A W TY + T+ ++E L A+VE +R
Sbjct: 96 FVDLL--GHLGAGGPAAATPW--FKASDFTY------FAPTSTLFIVELLLFAWVEVRRY 145
Query: 163 -------SMEKDP----------EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLAL 205
S +DP + YPGG FDPLG+SK E K+KEIKN RLA+
Sbjct: 146 QDMVKPGSTNQDPIFSQYSLPSGNEPGYPGGIFDPLGYSKG--NMAELKLKEIKNARLAM 203
Query: 206 LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
LA +GF VQ G PL++L++HLADPW NN+
Sbjct: 204 LAVLGFFVQAKT-TGKTPLDSLSSHLADPWSNNV 236
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 127/261 (48%), Gaps = 46/261 (17%)
Query: 18 SVLSSSKSKFFTAVSLP-----AAANATSKYAMSAD--------WMPGEPRPPYLDGSAP 64
SV+ ++K+ F L A A T + +SA W PG PP+LDGS P
Sbjct: 25 SVVGATKASFLGGKRLSLKKFTAPAAGTRSFTVSAAAADPNRPLWFPGSTPPPWLDGSLP 84
Query: 65 GDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEW 124
GDFGFDPL LG PE L+ +SE++HCRWAML I +PE L + W
Sbjct: 85 GDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAAG-----IFIPEFLTKIGILNTPSW 139
Query: 125 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP-------- 168
G+ Y T+ ++E + I + E +R + DP
Sbjct: 140 YTA--GELEYFTDKT------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLT 191
Query: 169 -EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
YPGG FDPLG+ S P K +E + KEIKNGRLA+LA +G Q+ Y GTGP++
Sbjct: 192 GTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLAMLAVMGAWF-QAIYTGTGPID 250
Query: 226 NLATHLADPWHNNIGDVIIPR 246
NL HLADP H I P+
Sbjct: 251 NLFAHLADPGHATIFAAFTPK 271
>gi|302828616|ref|XP_002945875.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902596|gb|AAD55568.1|AF110786_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300268690|gb|EFJ52870.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 243
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 114/214 (53%), Gaps = 35/214 (16%)
Query: 49 WMPGEPRPPYLDGSAP----GDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKF 104
W+PG P +LD A G+FGFDPL LG+ E L Y+++EL+H R AM AV
Sbjct: 30 WLPGSEIPKHLDSPAALAMAGNFGFDPLGLGKDAEALRWYQQAELVHARTAMTAVAG--- 86
Query: 105 FWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSM 164
IL+P L + EW G+ + P+G L L ++ FVE +R
Sbjct: 87 --ILIPGLLTKAGALNVPEW--YDAGKVAIESSFAPFGAL---LAVQLFLTGFVEAKRWQ 139
Query: 165 E-KDPEKKK-------------------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLA 204
+ K P + YPGG FDPLG SKD K ++K+KEIKNGRLA
Sbjct: 140 DFKKPGSQAEKGSFLGFETAFAGTGDNGYPGGIFDPLGLSKDADKLADWKLKEIKNGRLA 199
Query: 205 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
++AF+GF Q+ A G GP++NLA HLADPWH N
Sbjct: 200 MVAFLGFTAQKFA-TGKGPIDNLAAHLADPWHVN 232
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 108/195 (55%), Gaps = 11/195 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE R +E E+IHCRWAML + F +L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 167
+ G W +A GG YLG P V ++ I + + + VE R +
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEG 180
Query: 168 P----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
P E YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP
Sbjct: 181 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGP 239
Query: 224 LENLATHLADPWHNN 238
LENLA HLADP +NN
Sbjct: 240 LENLADHLADPVNNN 254
>gi|124388816|gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
Length = 272
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 117/217 (53%), Gaps = 38/217 (17%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W+PG PPYLDG+ GDFGFDPL LGE PE+L+ Y ++EL+H R+AM V F +L
Sbjct: 67 WLPGLDPPPYLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLL 126
Query: 109 VPEALGLGN---WVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME 165
GL N W +A T + T+ +++ L + FVE +R M+
Sbjct: 127 --RTTGLSNLPVWYEAG-------------ATKFQFANTTTLFIVQMLLMGFVETKRYMD 171
Query: 166 -KDPEKK-----------------KYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALL 206
K+P + YPGG +PLG +KD + E+K+KEIKNGRLA++
Sbjct: 172 FKNPGSQGEASFFGLEAALEGLEPGYPGGPILNPLGIAKDIKNAPEWKLKEIKNGRLAMV 231
Query: 207 AFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
A +G VQ S GPLENL HL+DPWH I ++
Sbjct: 232 AILGIFVQASV-THVGPLENLVEHLSDPWHTTIIQIL 267
>gi|217073418|gb|ACJ85068.1| unknown [Medicago truncatula]
gi|388507876|gb|AFK42004.1| unknown [Medicago truncatula]
Length = 253
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 132/252 (52%), Gaps = 43/252 (17%)
Query: 9 CGIATTAFPSVLSSSKSKFFTAVSL-PAAANATSKYAMSA---DWMPGEPRPPYLDGSAP 64
CG+ + L+ S K V++ P + ++ + + A +W+PG P YL GS P
Sbjct: 16 CGLKS----RFLTGSSGKLNREVAIRPMGCSPSASFKVEAKKGEWLPGLASPGYLTGSLP 71
Query: 65 GDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEW 124
GD GFDPL L E PENL+ + ++EL++ RWAML V +L+PE + +W
Sbjct: 72 GDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAG-----MLLPEVFTNIGIINVPKW 126
Query: 125 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---- 172
G+ Y + T+ VIEF+ +VE +R S+ +DP K+
Sbjct: 127 --YDAGKEEYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 178
Query: 173 -----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
YPGG F+PL F+ E K KEI NGRLA+LAF+GF +Q + G GP +NL
Sbjct: 179 KGEVGYPGGIFNPLNFAPT----LEAKEKEIANGRLAMLAFLGFIIQHNV-TGKGPFDNL 233
Query: 228 ATHLADPWHNNI 239
HL+DPWHN I
Sbjct: 234 LQHLSDPWHNTI 245
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 108/195 (55%), Gaps = 11/195 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE R +E E+IHCRWAML + F +L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 167
+ G W +A GG YLG P V ++ I + + + VE R +
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEG 180
Query: 168 P----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
P E YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP
Sbjct: 181 PLGEAEDLLYPGGSFDPLGLAADPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGP 239
Query: 224 LENLATHLADPWHNN 238
LENLA HLADP +NN
Sbjct: 240 LENLADHLADPVNNN 254
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 95/251 (37%), Positives = 121/251 (48%), Gaps = 36/251 (14%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRL 74
S LS K + + AA + T A D W PG PP+LDGS PGDFGFDPL L
Sbjct: 36 SFLSGKKLRLKKYTAPTAARSVTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL 95
Query: 75 GEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATY 134
G PE L ++EL+HCRWAML I +PE L + W G+ Y
Sbjct: 96 GSDPETLRWNVQAELVHCRWAMLGAAG-----IFIPEFLTKIGILNTPSWYTA--GELEY 148
Query: 135 LGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA 177
T+ ++E I + E +R + DP YPGG
Sbjct: 149 FTDTT------TLFIVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGL 202
Query: 178 -FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPW 235
FDPLG+ S P+K +E + KEIKNGRLA+LA +G Q Y GTGP++NL HLADP
Sbjct: 203 WFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPG 261
Query: 236 HNNIGDVIIPR 246
H + P+
Sbjct: 262 HATVFSAFTPK 272
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 119/233 (51%), Gaps = 36/233 (15%)
Query: 29 TAVSLPAAANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYK 85
T ++P A T A+ + W PG PP+LDGS PGDFGFDPL LG PE L+
Sbjct: 53 TKAAMPRRAAVTVSQAVQTERPLWFPGNTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMV 112
Query: 86 ESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLP 145
++EL+HCRWAML I +PE + W G+ Y
Sbjct: 113 QAELVHCRWAMLGAAG-----IFIPELCTKLGILNTPSWYTA--GELEYFTDKT------ 159
Query: 146 TILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPLGF-SKD 186
T+ V+E + + + E +R S+ DP YPGG FDPLG+ S
Sbjct: 160 TLFVVEMIFLGWAEGRRWADILEPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGS 219
Query: 187 PQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
P+K +E + KEIKNGRLA+LA +G Q+ Y GTGP++NL HLADP H I
Sbjct: 220 PEKIKELRTKEIKNGRLAMLAVMGAWF-QAEYTGTGPIDNLLAHLADPGHATI 271
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 95/260 (36%), Positives = 127/260 (48%), Gaps = 45/260 (17%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSAD------------WMPGEPRPPYLDGSAPG 65
S++ ++K+ F L + +T+ A SA W PG PP+LDGS PG
Sbjct: 25 SIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPG 84
Query: 66 DFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
DFGFDPL L PE+L +++EL+HCRWAML I +PE L + W
Sbjct: 85 DFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAG-----IFIPELLTKIGILNTPSWY 139
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP--------- 168
G Q + T T+ ++E + I + E +R + DP
Sbjct: 140 TA-GEQEYFTDT-------TTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG 191
Query: 169 EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
YPGG FDPLG+ S P K +E + KEIKNGRLA+LA +G Q Y GTGP++N
Sbjct: 192 TDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDN 250
Query: 227 LATHLADPWHNNIGDVIIPR 246
L HLADP H I P+
Sbjct: 251 LFAHLADPGHATIFAAFSPK 270
>gi|168067076|ref|XP_001785452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168067086|ref|XP_001785457.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662935|gb|EDQ49732.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662940|gb|EDQ49737.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 296
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 122/240 (50%), Gaps = 54/240 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P +LDGS PGD+GFDPL LG+ PE
Sbjct: 64 WFPGARAPEWLDGSLPGDYGFDPLSLGKSPEYLQIELDSLNQNLAKNEAGDVIGTRISKK 123
Query: 80 ---------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEW 124
L+R++E ELIH RWAMLA++ + L EA W A +
Sbjct: 124 EEIAPTPFQPYSEVFGLQRFRECELIHGRWAMLAILGA-----LSVEAFTGVTWQDAGKV 178
Query: 125 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGF 183
V G A+Y G P+P+ ++ +++ IE + F+E QR+ E DPEK+ YPGG FDPL F
Sbjct: 179 ELVDG--ASYFGLPLPF-SITSLVYIEAFLVGFIEFQRNAELDPEKRLYPGGKFFDPLNF 235
Query: 184 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
+ +K E K+ EIK+ RLA++A Q+A G GPL+N ATHLADP H I D
Sbjct: 236 ADTEEKKETLKLAEIKHARLAMVA-ALGFAAQAAATGKGPLDNWATHLADPLHTTIFDTF 294
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 108/196 (55%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+DP L + PE+ +Y+ ELIH RWAML ++PEA
Sbjct: 90 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAG-----FIIPEAFNK 144
Query: 116 --GNWVQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
N W + GG Y G P+P L +V E + + E+ R + D
Sbjct: 145 YGANCGPEAVWFKTGALLLDGGTLNYFGKPIPI-NLIVAVVAEIVLVGGAEYYRIINGLD 203
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG +KDP + KVKEIKNGRLA+ A +GF Q+ G GP+ENL
Sbjct: 204 LEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFYF-QAYVTGEGPVENL 262
Query: 228 ATHLADPWHNNIGDVI 243
A HL+DP+ NN+ VI
Sbjct: 263 AKHLSDPFGNNLLTVI 278
>gi|31323256|gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 107/195 (54%), Gaps = 11/195 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L VPE R +E E+IHCRWAML + F +L
Sbjct: 64 GEP-PSYLTGQFPGDYGWDTAGLSAVPETFVRNRELEVIHCRWAMLGALGCVFPELLARN 122
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 167
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVPGDG 181
Query: 168 P----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
P E YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP
Sbjct: 182 PLGEAEDLLYPGGSFDPLGLATDPVAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGP 240
Query: 224 LENLATHLADPWHNN 238
LENLA HLADP +NN
Sbjct: 241 LENLADHLADPVNNN 255
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 95/251 (37%), Positives = 121/251 (48%), Gaps = 36/251 (14%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRL 74
S LS K + + AA + T A D W PG PP+LDGS PGDFGFDPL L
Sbjct: 33 SFLSGKKLRLKKYTAPTAARSVTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL 92
Query: 75 GEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATY 134
G PE L ++EL+HCRWAML I +PE L + W G+ Y
Sbjct: 93 GSDPETLRWNVQAELVHCRWAMLGAAG-----IFIPEFLTKIGILNTPSWYTA--GELEY 145
Query: 135 LGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA 177
T+ ++E I + E +R + DP YPGG
Sbjct: 146 FTDTT------TLFIVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGL 199
Query: 178 -FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPW 235
FDPLG+ S P+K +E + KEIKNGRLA+LA +G Q Y GTGP++NL HLADP
Sbjct: 200 WFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPG 258
Query: 236 HNNIGDVIIPR 246
H + P+
Sbjct: 259 HATVFSAFTPK 269
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 118/214 (55%), Gaps = 34/214 (15%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFW 106
A W+PG PPYLDG+ GD+GFDPL LGE PE+L+ Y ++EL+H R+AML V F
Sbjct: 47 ATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTD 106
Query: 107 ILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME- 165
+L G+ N E AV + + T++V++FL + F E +R M+
Sbjct: 107 LL--RTTGIRNLPVWYEAGAV----------KFDFASTKTLIVVQFLLMGFAETKRYMDF 154
Query: 166 -------------------KDPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLAL 205
+ + YPGG +PLG +KD Q ++K+KEIKNGRLA+
Sbjct: 155 VSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAM 214
Query: 206 LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+A +GF VQ S TGP++NL HL++PWH I
Sbjct: 215 MAMLGFFVQASVTH-TGPIDNLVEHLSNPWHKTI 247
>gi|75266203|sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding protein P4, chloroplastic;
AltName: Full=LHCI type III CAB-P4; Flags: Precursor
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna chlorophyll a/b-binding protein [Pisum
sativum]
Length = 252
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 130/252 (51%), Gaps = 43/252 (17%)
Query: 9 CGIATTAFPSVLSSSKSKFFTAVSL-PAAANATSKYAMSA---DWMPGEPRPPYLDGSAP 64
CG+ + L S K V+ P + ++ + + A +W+PG P YL GS P
Sbjct: 16 CGLKS----RFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLP 71
Query: 65 GDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEW 124
GD GFDPL L E PENL + ++EL++ RWAML V +L+PE + +W
Sbjct: 72 GDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAG-----MLLPEVFTSIGIINVPKW 126
Query: 125 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---- 172
A G+ Y + T+ VIEF+ +VE +R S+ +DP K+
Sbjct: 127 YAA--GKEEYFASS------STLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 178
Query: 173 -----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
YPGG F+PL F+ E K KEI NGRLA+LAF+GF +Q + G GP +NL
Sbjct: 179 AGEVGYPGGIFNPLNFAPT----LEAKEKEIANGRLAMLAFLGFIIQHNV-TGKGPFDNL 233
Query: 228 ATHLADPWHNNI 239
H++DPWHN I
Sbjct: 234 LQHISDPWHNTI 245
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 108/196 (55%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+DP L + PE+ +Y+ ELIH RWAML ++PEA
Sbjct: 89 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAG-----FIIPEAFNK 143
Query: 116 --GNWVQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
N W + GG Y G P+P L +V E + + E+ R + D
Sbjct: 144 YGANCGPEAVWFKTGALLLDGGTLNYFGKPIPI-NLILAVVAEIVLVGGAEYYRIINGLD 202
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG +KDP + KVKEIKNGRLA+ A +GF Q+ G GP+ENL
Sbjct: 203 LEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFYF-QAYVTGEGPVENL 261
Query: 228 ATHLADPWHNNIGDVI 243
A HL+DP+ NN+ VI
Sbjct: 262 AKHLSDPFGNNLLTVI 277
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 96/259 (37%), Positives = 128/259 (49%), Gaps = 42/259 (16%)
Query: 12 ATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGD 66
+ AFP K K + ++ P +T+ +A+ W PG PP+LDGS PGD
Sbjct: 28 TSKAFPG----RKLKVNSNIAAPVRVRSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLPGD 83
Query: 67 FGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAA 126
FGFDPL L PE+L+ ++EL+HCRWAML I +PE L + W
Sbjct: 84 FGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAG-----IFIPEFLTKIGILNTPSWYT 138
Query: 127 VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------E 169
G Q + T T+ ++E + I + E +R + DP
Sbjct: 139 A-GEQEYFTDT-------TTLFIVELIFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGT 190
Query: 170 KKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
YPGG FDPLG+ S PQK +E + KEIKNGRLA+LA +G Q Y GTGP++NL
Sbjct: 191 DVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNL 249
Query: 228 ATHLADPWHNNIGDVIIPR 246
HLADP H I P+
Sbjct: 250 FAHLADPGHATIFAAFTPK 268
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 93/247 (37%), Positives = 124/247 (50%), Gaps = 38/247 (15%)
Query: 24 KSKFFTAVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVP 78
K K + ++ P +T+ +A+ W PG PP+LDGS PGDFGFDPL L P
Sbjct: 36 KLKVNSNIAAPVRVRSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDP 95
Query: 79 ENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTP 138
E+L+ ++EL+HCRWAML I +PE L + W G Q + T
Sbjct: 96 ESLKWNVQAELVHCRWAMLGAAG-----IFIPEFLTKIGILNTPSWYTA-GEQEYFTDT- 148
Query: 139 VPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDP 180
T+ ++E + I + E +R + DP YPGG FDP
Sbjct: 149 ------TTLFIVELIFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDP 202
Query: 181 LGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
LG+ S PQK +E + KEIKNGRLA+LA +G Q Y GTGP++NL HLADP H I
Sbjct: 203 LGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGHATI 261
Query: 240 GDVIIPR 246
P+
Sbjct: 262 FAAFTPK 268
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 118/214 (55%), Gaps = 34/214 (15%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFW 106
A W+PG PPYLDG+ GD+GFDPL LGE PE+L+ Y ++EL+H R+AML V F
Sbjct: 39 ATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTD 98
Query: 107 ILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME- 165
+L G+ N E AV + + T++V++FL + F E +R M+
Sbjct: 99 LL--RTTGIRNLPVWYEAGAV----------KFDFASTKTLIVVQFLLMGFAETKRYMDF 146
Query: 166 -------------------KDPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLAL 205
+ + YPGG +PLG +KD Q ++K+KEIKNGRLA+
Sbjct: 147 VSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAM 206
Query: 206 LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+A +GF VQ S TGP++NL HL++PWH I
Sbjct: 207 MAMLGFFVQASV-THTGPIDNLVEHLSNPWHKTI 239
>gi|72580631|gb|AAR19267.2| chlorophyll a/b binding protein presusor [Oryza sativa Japonica
Group]
Length = 244
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 97/256 (37%), Positives = 132/256 (51%), Gaps = 41/256 (16%)
Query: 7 MSCGIATTAFPSVLSSS--KSKFFTAVSLPAAANATSKYAMSAD----WMPGEPRPPYLD 60
M+ A T ++ SS+ KS F S A T++ + A+ W+PG P P YL+
Sbjct: 1 MASVTARTPVAALRSSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPSPTYLN 60
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQ 120
GS PGD GFDPL L E PENL + ++EL++ RWAML V +L+PE L +
Sbjct: 61 GSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAG-----MLLPEVLTKIGLID 115
Query: 121 AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK 172
A +W G+ATY + T+ VIEF+ +VE +R + +DP K
Sbjct: 116 APQW--YDAGKATYFASS------STLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKS 167
Query: 173 ---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
YP + PL F + E K KE+ NGRLA+LAF+GF VQ + GP
Sbjct: 168 YSLPPHECGYPAASSTPLNF----EPTLEAKEKELANGRLAMLAFLGFLVQHNVTQ-KGP 222
Query: 224 LENLATHLADPWHNNI 239
+NL HL+DPWHN I
Sbjct: 223 FDNLLQHLSDPWHNTI 238
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 133/266 (50%), Gaps = 43/266 (16%)
Query: 3 SNTLMSCGIATTAFPSVLSSS--KSKFFTAVSLPAAANATSKYAMSAD--------WMPG 52
++ + S +T+A +V S S K+ FF A +A SK + S W PG
Sbjct: 8 TSRIASIAPSTSATKAVSSGSAVKAAFFGKTLRSAKVSAVSKASFSVRAQATERPLWFPG 67
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
P +LDGS PGDFGFDPL LG PE L+ + ++E++HCRWAML I +PE
Sbjct: 68 STAPEWLDGSLPGDFGFDPLGLGSEPELLKWFVQAEIVHCRWAMLGAAG-----IFIPEL 122
Query: 113 LGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SM 164
L + W G+ TY T+ ++E L + + E +R S+
Sbjct: 123 LTKIGILNTPSW--YTAGEQTYFADQT------TLFIVELLFMGWAEGRRWADILKPGSV 174
Query: 165 EKDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCV 213
DP YPGG FDPLG+ + K +E + KEIKNGRLA+LA +G
Sbjct: 175 NTDPVFPNNKLTGTDVGYPGGFWFDPLGWGAGGAAKVKELRTKEIKNGRLAMLAVMGAWF 234
Query: 214 QQSAYPGTGPLENLATHLADPWHNNI 239
Q+ Y GTGP++NL HLADP H +
Sbjct: 235 -QAVYTGTGPIDNLFAHLADPGHATV 259
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 116/210 (55%), Gaps = 33/210 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P +LDGS PGDFGFDPL LG PE L+ + ++EL+H RWAMLAV IL
Sbjct: 95 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAG-----IL 149
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--SMEK 166
+PE L +++ W G Y P T+ +++ + + +VE +R M K
Sbjct: 150 IPEWLESLGFIENYNW--FDAGAREYFADPT------TLFIVQLVLMGWVEGRRWADMIK 201
Query: 167 D---------PEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFV 209
P K K YPGG FDPL + + P+ + KEIKNGRLA+LAFV
Sbjct: 202 PGCVDIEPTLPNKTKPKPDVGYPGGLWFDPLMWGRGSPEPVMVLRTKEIKNGRLAMLAFV 261
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GFC Q+ Y G GP+ENL H+ADP H NI
Sbjct: 262 GFCF-QAVYTGEGPIENLMAHIADPGHCNI 290
>gi|125600703|gb|EAZ40279.1| hypothetical protein OsJ_24721 [Oryza sativa Japonica Group]
Length = 267
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 78/164 (47%), Positives = 107/164 (65%), Gaps = 10/164 (6%)
Query: 81 LERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVP 140
L+R++E ELIH RWAMLA + + L E L W A + V G ++YLG P+P
Sbjct: 109 LQRFRECELIHGRWAMLATLGA-----LSVEWLTGVTWQDAGKVELVDG--SSYLGQPLP 161
Query: 141 WGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIK 199
+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG+ FDPLG + DP+K E ++ EIK
Sbjct: 162 F-SISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEKKERLQLAEIK 220
Query: 200 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 221 HARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIFDTF 263
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 95/260 (36%), Positives = 126/260 (48%), Gaps = 45/260 (17%)
Query: 18 SVLSSSKSKFFTAVSL-------PAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPG 65
S+L S+K+ F + L P A +++ A+ W PG PP+LDGS PG
Sbjct: 25 SLLGSTKASFLSGRKLKVNNFTAPVGARSSTTVCAVAEPDRPLWFPGSTPPPWLDGSLPG 84
Query: 66 DFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
DFGFDPL L PE+L ++EL+HCRWAML I +PE L + W
Sbjct: 85 DFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAG-----IFIPEFLTKIGILNTPSWY 139
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP--------- 168
G+ Y T+ ++E I + E +R + DP
Sbjct: 140 TA--GELEYFTDTT------TLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG 191
Query: 169 EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
YPGG FDPLG+ S P+K +E + KEIKNGRLA+LA +G Q Y GTGP++N
Sbjct: 192 TDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDN 250
Query: 227 LATHLADPWHNNIGDVIIPR 246
L HLADP H I P+
Sbjct: 251 LFAHLADPGHATIFAAFTPK 270
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 108/196 (55%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+DP L + PE+ +Y+ ELIH RWAML ++PEA
Sbjct: 89 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAG-----FIIPEAFNK 143
Query: 116 --GNWVQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
N W + GG Y G P+P + + V E + + E+ R + D
Sbjct: 144 YGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINFILAV-VAEIVLVGGAEYYRIINGLD 202
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG +KDP + KVKEIKNGRLA+ A +GF Q+ G GP+ENL
Sbjct: 203 LEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFYF-QAYVTGEGPVENL 261
Query: 228 ATHLADPWHNNIGDVI 243
A HL+DP+ NN+ VI
Sbjct: 262 AKHLSDPFGNNLLTVI 277
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 127/255 (49%), Gaps = 39/255 (15%)
Query: 17 PSVLSSSKSKFFTAVSLPAAA-NATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFD 70
PS L K + S+PA + +A A++AD W PG P +LDGS PGDFGFD
Sbjct: 16 PSFLGGKKLRLKNKASVPAVSRSAALVRAVAADPERPIWFPGSTPPEWLDGSLPGDFGFD 75
Query: 71 PLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGG 130
PL L P++L+ ++EL+HCRWAML I +PE L + W G
Sbjct: 76 PLGLSSDPDSLKWNAQAELVHCRWAMLGAAG-----IFIPEFLTKIGILNTPSWYTA--G 128
Query: 131 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKY 173
+ Y T+ V+E + I + E +R S+ DP Y
Sbjct: 129 EQEYFTDKT------TLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGY 182
Query: 174 PGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 231
PGG FDPLG+ S P K +E + KEIKNGRLA+LA +G Q Y GTGP++NL HL
Sbjct: 183 PGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHL 241
Query: 232 ADPWHNNIGDVIIPR 246
ADP H I P+
Sbjct: 242 ADPGHATIFAAFTPK 256
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 117/214 (54%), Gaps = 34/214 (15%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFW 106
A W+PG PPYLDG+ GD+GFDPL LGE PE+L+ Y ++EL+H R+AML V F
Sbjct: 47 ATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTD 106
Query: 107 ILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME- 165
+L G+ N E AV + T++V++FL + F E +R M+
Sbjct: 107 LL--RTTGIRNLPVWYEAGAV----------KFDFACTKTLIVVQFLLMGFAETKRYMDF 154
Query: 166 -------------------KDPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLAL 205
+ + YPGG +PLG +KD Q ++K+KEIKNGRLA+
Sbjct: 155 VSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAM 214
Query: 206 LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+A +GF VQ S TGP++NL HL++PWH I
Sbjct: 215 MAMLGFFVQASVTH-TGPIDNLVEHLSNPWHKTI 247
>gi|145079846|tpg|DAA05942.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Micromonas sp. CCMP490]
Length = 250
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 128/253 (50%), Gaps = 48/253 (18%)
Query: 22 SSKSKFFTAVSLPAAANATSKYAMSA----DWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77
+ +S+ S+ + A A+ + A ++ PG P +LDG+ PGD+GFDPL LGE
Sbjct: 14 TQRSRTVRPRSVASKARASVRVGAVAAARPNFFPGTTPPKHLDGTMPGDYGFDPLGLGED 73
Query: 78 PENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-------GLGNWVQAQEWAAVPGG 130
LE YK++EL H RWAML V + PE + + NW +A W
Sbjct: 74 KVALEWYKQAELQHARWAMLGVTG-----MAAPELIQNPFVEGAMPNWAEAPLWDG---- 124
Query: 131 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP----------EKKK 172
Y+ +P T+ V++ + + E +R +M +DP
Sbjct: 125 ---YMASP------NTLFVVQMFMMNWAEVRRWQDMKNPGTMNEDPLTGANKGDTNTDVG 175
Query: 173 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 232
YP G FDP+G +KDP+K + KVKEI NGRLA++A +G C+ Q+ G GP+ NL HLA
Sbjct: 176 YPKGLFDPMGMAKDPEKVKVLKVKEIANGRLAMVAVMG-CIIQNEATGVGPIANLKAHLA 234
Query: 233 DPWHNNIGDVIIP 245
DP HN I +P
Sbjct: 235 DPAHNTIFTNFVP 247
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 112/217 (51%), Gaps = 33/217 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG PP+LDGS PGDFGFDPL LG PE+L ++EL+HCRWAML I
Sbjct: 61 WFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAG-----IF 115
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
+PE L + W G+ Y T+ +IE + I + E +R
Sbjct: 116 IPEFLTKIGILNTPSWYTA--GEQQYFTDTT------TLFIIELILIGWAEGRRWADIIK 167
Query: 163 --SMEKDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFV 209
+ DP YPGG FDPLG+ + P+K +E + KEIKNGRLA+LA +
Sbjct: 168 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVM 227
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 246
G Q+ Y GTGP++NL HLADP H I P+
Sbjct: 228 GAWF-QAEYTGTGPIDNLFAHLADPGHATIFQAFTPK 263
>gi|384247027|gb|EIE20515.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 255
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 119/223 (53%), Gaps = 33/223 (14%)
Query: 37 ANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAM 96
+N + + +W+PG P YL+ PG +GFDPL+LGE P +L+ Y +SEL+H R+AM
Sbjct: 26 SNGSRVCMKAGNWLPGSKTPAYLE-DLPGSYGFDPLKLGEDPASLKWYVQSELVHSRFAM 84
Query: 97 LAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIA 156
AV IL+PE L V W G+ +P+P+ TL + +E +
Sbjct: 85 AAVAG-----ILIPEVLKAFGAVNLPVWYEA--GKYAQESSPIPFNTL---IALEIFAFN 134
Query: 157 FVEHQRSME--------------------KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVK 196
FVE +R + K + YPGG FDPLG SK P +E K++
Sbjct: 135 FVEIKRWQDFKKPGSQGEEGSFVGLEGFFKGTGENGYPGGVFDPLGLSKGP-GYEAMKLR 193
Query: 197 EIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
EIKNGRLA+LAF+GF Q A G GP+ENL HL++P NN
Sbjct: 194 EIKNGRLAMLAFIGFASQYLA-TGKGPIENLLDHLSNPLANNF 235
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/260 (36%), Positives = 126/260 (48%), Gaps = 45/260 (17%)
Query: 18 SVLSSSKSKFFTAVSL-------PAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPG 65
S+L S+K+ F + L P A +++ A+ W PG PP+LDGS PG
Sbjct: 36 SLLGSTKASFLSGRKLKVNNFTAPVGARSSTTVCAVAEPDRPLWFPGSTPPPWLDGSLPG 95
Query: 66 DFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
DFGFDPL L PE+L ++EL+HCRWAML I +PE L + W
Sbjct: 96 DFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAG-----IFIPEFLTKIGILNTPSWY 150
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP--------- 168
G+ Y T+ ++E I + E +R + DP
Sbjct: 151 TA--GELEYFTDTT------TLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG 202
Query: 169 EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
YPGG FDPLG+ S P+K +E + KEIKNGRLA+LA +G Q Y GTGP++N
Sbjct: 203 TDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDN 261
Query: 227 LATHLADPWHNNIGDVIIPR 246
L HLADP H I P+
Sbjct: 262 LFAHLADPGHATIFAAFTPK 281
>gi|20218813|emb|CAC84491.1| putative chlorophyll a/b-binding protein type 4 [Pinus pinaster]
Length = 251
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 114/215 (53%), Gaps = 35/215 (16%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS 101
K +W+PG P YL+GS PGD G DPL L E PE+L+ Y ++EL++ RWAML V
Sbjct: 48 KVEAKGEWLPGLSSPSYLNGSLPGDNGXDPLGLAEDPESLKWYVQAELVNGRWAMLGVAG 107
Query: 102 SKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQ 161
+ +PE L + +W G+ Y + T+ VIEF+ +VE +
Sbjct: 108 -----MXIPEVLTSIGLINVPKW--YDAGKVEYFASSX------TLFVIEFILFHYVELR 154
Query: 162 R--------SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLA 204
R S+ +DP K YPGG F+PL FS E K KE+ NGRLA
Sbjct: 155 RWQDIKYPGSVNQDPIXKSYSLPPNEVGYPGGIFNPLNFSPS----MEAKEKELANGRLA 210
Query: 205 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+LAF+GF VQ + G GP +NL HL+DPWHN I
Sbjct: 211 MLAFLGFVVQHNVT-GKGPFDNLLQHLSDPWHNTI 244
>gi|326496799|dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509647|dbj|BAJ87039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 257
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 120/229 (52%), Gaps = 39/229 (17%)
Query: 34 PAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCR 93
P A A A A W+PG P YLDG+ PGD+GFDPL LGE PE+L+ Y ++EL+HCR
Sbjct: 38 PRARFAVRAIAERATWLPGLDPPAYLDGTLPGDYGFDPLGLGEQPEDLKWYVQAELVHCR 97
Query: 94 WAMLAVVSSKFFWILVPEALGLGN---WVQAQEWAAVPGGQATYLGTPVPWGTLPTILVI 150
+AM V + + G+GN W +A T + + +
Sbjct: 98 FAMAGV--AGILGTDLIRVSGIGNLPVWFEAG-------------ATKFDFANTTALFFV 142
Query: 151 EFLSIAFVEHQRSME-------------------KDPEKKKYPGG-AFDPLGFSKDPQKF 190
+ L + FVE +R M+ + + YPGG F+P+G +KD +
Sbjct: 143 QLLLMGFVETKRYMDFVSPGSQAKEGTFLGIEASLEGLQPGYPGGPLFNPMGLAKDIENA 202
Query: 191 EEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
E K+KEIKNGRLA++A +GF VQ S GP++NL THL+DP++ NI
Sbjct: 203 NEVKLKEIKNGRLAMVAMLGFIVQASVTH-AGPIDNLLTHLSDPFNKNI 250
>gi|168040609|ref|XP_001772786.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168040679|ref|XP_001772821.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675863|gb|EDQ62353.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675898|gb|EDQ62388.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 296
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 121/240 (50%), Gaps = 54/240 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P +LDGS PGD+GFDPL LG+ PE
Sbjct: 64 WFPGAQAPEWLDGSLPGDYGFDPLSLGKSPEYLQIELDSLNQNLAKNEAGDVIGTRISKK 123
Query: 80 ---------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEW 124
L+R++E ELIH RWAMLA++ + L EA W A +
Sbjct: 124 EEIAPTPFQPYSEVFGLQRFRECELIHGRWAMLAILGA-----LSVEAFTGVTWQDAGKV 178
Query: 125 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGF 183
V G A+Y G P+P+ ++ +++ IE + F+E QR+ E DPEK+ YPGG FDPL F
Sbjct: 179 ELVDG--ASYFGLPLPF-SITSLVYIEAFLVGFIEFQRNAELDPEKRLYPGGKFFDPLNF 235
Query: 184 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
+ K E K+ EIK+ RLA++A Q+A G GPL+N ATHLADP H I D
Sbjct: 236 ADTEDKKETLKLAEIKHARLAMVA-ALGFAAQAAATGKGPLDNWATHLADPLHTTIFDTF 294
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 112/211 (53%), Gaps = 34/211 (16%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P +LDGS PGDFGFDPL LG PE L+ + ++EL+HCRWAML I
Sbjct: 68 WFPGSQPPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAG-----IF 122
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
+PEAL + W V G Q + T+ VIE + A+ E +R
Sbjct: 123 IPEALTKAGILNTPSW-TVAGDQQYFTDA-------TTLFVIEIILFAWAEGRRWADIIN 174
Query: 163 --SMEKDP---------EKKKYPGGA-FDPLGFSK--DPQKFEEYKVKEIKNGRLALLAF 208
+ DP YPGG FDPLG+ + D K ++ + +EIKNGRLA+LA
Sbjct: 175 PGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTGDAAKLKDLRTREIKNGRLAMLAV 234
Query: 209 VGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+G VQ + Y TGP++NL HLADP HN I
Sbjct: 235 LGAVVQAN-YTHTGPIDNLLAHLADPGHNTI 264
>gi|168068456|ref|XP_001786080.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662173|gb|EDQ49108.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 278
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 131/266 (49%), Gaps = 52/266 (19%)
Query: 12 ATTAFPSVLSSSKSKFFTAVSL---PAAANATSKYAMSAD---------WMPGEPRPPYL 59
+++ F + ++S+K+ FF+ +L AA +SA W PG P +L
Sbjct: 18 SSSKFETNVASTKASFFSGRALRMTKVAAYTNGDMTISAVAAPQNERPLWFPGSQAPEWL 77
Query: 60 DGSAPGDFGFDPLRL------GEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL 113
DGS PGDFGFDPL L G PE L+ + ++EL+HCRWAML I +PEAL
Sbjct: 78 DGSLPGDFGFDPLGLVLRTCAGSDPETLKWFVQAELVHCRWAMLGAAG-----IFIPEAL 132
Query: 114 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 165
+ W G A Y T+ VIE + A+ E +R +
Sbjct: 133 TKMGILNTPSWTV--AGDADYFTDKT------TLFVIELILFAWAEGRRWADIVNPGCVN 184
Query: 166 KDP---------EKKKYPGGA-FDPLGF--SKDPQKFEEYKVKEIKNGRLALLAFVGFCV 213
DP YPGG FDPLG+ + D K ++ + +EIKNGRLA+LA +G V
Sbjct: 185 VDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTSDAAKLKDLRTREIKNGRLAMLAVLGAIV 244
Query: 214 QQSAYPGTGPLENLATHLADPWHNNI 239
Q + Y TGP++NL HL DP HN I
Sbjct: 245 QAN-YTHTGPIDNLVAHLVDPGHNTI 269
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/247 (38%), Positives = 123/247 (49%), Gaps = 38/247 (15%)
Query: 24 KSKFFTAVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVP 78
K K ++ + P+ +TS A+ W PG PP+LDGS PGDFGFDPL LG P
Sbjct: 37 KLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDP 96
Query: 79 ENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTP 138
E+L ++EL+H RWAML I +PE L + W G Q + T
Sbjct: 97 ESLRWNVQAELVHSRWAMLGAAG-----IFIPEFLTKLGILNTPSWYTA-GEQEYFTDT- 149
Query: 139 VPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDP 180
T+ ++E + I + E +R + DP YPGG FDP
Sbjct: 150 ------TTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDP 203
Query: 181 LGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
LG+ S PQK +E + KEIKNGRLA+LA +G Q Y GTGP++NL HLADP H I
Sbjct: 204 LGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGHATI 262
Query: 240 GDVIIPR 246
P+
Sbjct: 263 FAAFTPK 269
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 111/195 (56%), Gaps = 13/195 (6%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL+G PGD+G+DP LG PEN ++Y+ ELIH RWAML +KF
Sbjct: 104 PEYLNGEVPGDYGYDPFGLGRKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYC 163
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDP 168
PEA+ W + + GG +Y G +P + ++ L ++ + +
Sbjct: 164 GPEAV----WFKTGAL-LLDGGTLSYFGASIPINLIAAVVAEVVLVGGAEYYRATNGLNF 218
Query: 169 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
+ K +PGG FDPLG +KDP +F KVKEIKNGRLA+ + +GF + Q+ G GP+ENLA
Sbjct: 219 DDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFL-QAYVTGEGPVENLA 277
Query: 229 THLADPWHNNIGDVI 243
HL+DP+ NNI V+
Sbjct: 278 AHLSDPFGNNILTVL 292
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 111/217 (51%), Gaps = 33/217 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG PP+LDGS PGDFGFDP LG PE+L ++EL+HCRWAML I
Sbjct: 56 WFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAG-----IF 110
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
+PE L + W G+ TY T+ ++E + I + E +R
Sbjct: 111 IPELLTKIGILNTPSWYTA--GEQTYFADTT------TLFIVELILIGWAEGRRWADIIK 162
Query: 163 --SMEKDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFV 209
+ DP YPGG FDPLG+ S P+K +E + KEIKNGRLA+LA +
Sbjct: 163 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGYGSGSPEKIKELRTKEIKNGRLAMLAVM 222
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 246
G Q+ Y GTGP++NL HLADP H I P
Sbjct: 223 GAWF-QAEYTGTGPIDNLFAHLADPGHATIFRAFTPN 258
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 125/250 (50%), Gaps = 37/250 (14%)
Query: 20 LSSSKSKFFTAVSLPAAANATSKYAMSAD----WMPGEPRPPYLDGSAPGDFGFDPLRLG 75
L+ +++ F A AA+ + +A W PG PP+LDGS PGDFGFDP LG
Sbjct: 20 LAGARTSFLGAAGKAAASRTSFAVRAAAPERPIWFPGSTPPPWLDGSLPGDFGFDPWGLG 79
Query: 76 EVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYL 135
PE+L ++EL+HCRWAML I +PE L + W G Q +
Sbjct: 80 SDPESLRWNVQAELVHCRWAMLGAAG-----IFIPELLTKIGILNTPSWYTA-GEQEYFT 133
Query: 136 GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA- 177
T T+ ++E + I + E +R + DP YPGG
Sbjct: 134 DT-------TTLFIVELILIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLW 186
Query: 178 FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 236
FDPLG+ + P+K +E + KEIKNGRLA+LA +G Q+ Y GTGP++NL HLADP H
Sbjct: 187 FDPLGYGTGSPEKLKELRTKEIKNGRLAMLAVMGAWF-QAEYTGTGPIDNLFAHLADPGH 245
Query: 237 NNIGDVIIPR 246
I P+
Sbjct: 246 ATIFRAFAPK 255
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 118/214 (55%), Gaps = 34/214 (15%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFW 106
A W+PG PPYLDG+ GD+GFDPL LGE PE+L+ Y ++EL+H R+AML V F
Sbjct: 47 ATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTD 106
Query: 107 ILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME- 165
+L G+ N E AV + + T++V++FL + F E +R M+
Sbjct: 107 LL--RTTGIRNLPVWYEAGAV----------KFDFASTKTLIVVQFLLMGFAETKRYMDF 154
Query: 166 -------------------KDPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLAL 205
+ + YPGG +PLG +KD + ++K+KEIKNGRLA+
Sbjct: 155 VSPGSQAKEGSFFFGIEAALEGLEPGYPGGPLLNPLGLAKDVKNAHDWKLKEIKNGRLAM 214
Query: 206 LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+A +GF VQ S TGP++NL HL++PWH I
Sbjct: 215 MAMLGFFVQASVTH-TGPIDNLVEHLSNPWHXTI 247
>gi|159465641|ref|XP_001691031.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158279717|gb|EDP05477.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 246
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 116/219 (52%), Gaps = 29/219 (13%)
Query: 24 KSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLER 83
KS+ VS P+ A + W PG P +LDGS GD+GFDPLRLG +NL+
Sbjct: 6 KSRVSAGVSRPSRATVRVSASTRPMWYPGATAPAHLDGSMLGDYGFDPLRLGVNKDNLKW 65
Query: 84 YKESELIHCRWAMLAVVSSKFFWILVPEALGLGN-WVQAQEWAAVPGGQATYLGTPVPWG 142
++E+EL + RWAM AVV IL +A+GL W E A+
Sbjct: 66 FREAELTNGRWAMAAVVG-----ILFTDAVGLPKFWTAGAEKYALDN------------- 107
Query: 143 TLPTILVIEFLSIAFVEHQRS--MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKN 200
T+ +IE A +E +R +K E FDP+G K EE K+KE+KN
Sbjct: 108 --QTLALIEVAVFAVLEGKRYEIYKKTGETGFLSFAPFDPMGM-----KSEEMKLKELKN 160
Query: 201 GRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GRLA+LAF+GFC Q + Y G GP+E L HLADP HNNI
Sbjct: 161 GRLAMLAFLGFCSQAAVY-GKGPIETLQLHLADPGHNNI 198
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/260 (36%), Positives = 125/260 (48%), Gaps = 45/260 (17%)
Query: 18 SVLSSSKSKFFTAVSL-------PAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPG 65
S + ++K+ F + L P A+ + AD W PG PP+LDGS PG
Sbjct: 25 STVGATKASFLSGKRLTVRKHTSPVVASRSVTVCAVADPDRPLWFPGSTPPPWLDGSLPG 84
Query: 66 DFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
DFGFDPL LG PE L ++EL+HCRWAML I +PE L + W
Sbjct: 85 DFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG-----IFIPEFLTKIGILNTPSW- 138
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP--------- 168
G+ Y T+ +IE + I + E +R + DP
Sbjct: 139 -YDAGKLEYFTDTT------TLFIIELIFIGWAEGRRWADILKPGCVNTDPIFPNNRLTG 191
Query: 169 EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
YPGG FDPLG+ S P+K +E + KEIKNGRLA+LA +G Q Y GTGP++N
Sbjct: 192 TDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDN 250
Query: 227 LATHLADPWHNNIGDVIIPR 246
L HLADP H + P+
Sbjct: 251 LFAHLADPGHATVFAAFSPK 270
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 109/196 (55%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL G PGD+G+DP L + PE+ +Y+ ELIH RWAML +KF
Sbjct: 94 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIVPEAFNKFGANC 153
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + GG Y G +P L ++ E + + E+ R + D
Sbjct: 154 GPEAV----WFKTGALL-LDGGTLNYFGNSIPI-NLVVAVIAEVVLLGGAEYYRIINGLD 207
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG +KDP + KVKEIKNGRLA+ A +GF Q+ G GP+ENL
Sbjct: 208 LEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGFYF-QAYVTGEGPVENL 266
Query: 228 ATHLADPWHNNIGDVI 243
A HL+DP+ NN+ V+
Sbjct: 267 AKHLSDPFGNNLLTVL 282
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/266 (37%), Positives = 132/266 (49%), Gaps = 47/266 (17%)
Query: 7 MSCGIATTAFPSVLSSSKS------KFFTAVSLPAAANATSKYAMSAD--------WMPG 52
M+ IA+TAF S+ + S K T + NAT + + W PG
Sbjct: 1 MALSIASTAFSSLPTREVSSKHFPRKLTTWLPGRVRLNATKGVSSVCEPLPPDRPLWFPG 60
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
P +LDGS PGDFGFDPL LG PE L + ++EL+H RWAMLAV IL+PE
Sbjct: 61 SSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAG-----ILIPEC 115
Query: 113 LGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME------- 165
L +++ W G + P T+ V++ + +VE +R +
Sbjct: 116 LERLGFIENFSW--YDAGAQEFFADPT------TLFVVQLALMGWVEGRRWADLINPGCV 167
Query: 166 ----KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCV 213
P K K YPGG FDP + + P+ + KEIKNGRLA+LAFVGFC
Sbjct: 168 DIQLTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCF 227
Query: 214 QQSAYPGTGPLENLATHLADPWHNNI 239
Q+ Y G GP+ENL H+ADP H N+
Sbjct: 228 -QAIYTGEGPIENLMAHIADPGHCNV 252
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 111/217 (51%), Gaps = 33/217 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG PP+LDGS PGDFGFDPL LG PE L+ +SE++HCRWAML I
Sbjct: 70 WFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAAG-----IF 124
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
+PE L + W G+ Y T+ ++E + I + E +R
Sbjct: 125 IPEFLTKIGILNTPSWYTA--GELEYFTDKT------TLFIVEMIFIGWAEGRRWADIIK 176
Query: 163 --SMEKDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFV 209
+ DP YPGG FDPLG+ S P K +E + KEIKNGRLA+LA +
Sbjct: 177 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLAMLAVM 236
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 246
G Q+ Y GTGP++NL HLADP H I P+
Sbjct: 237 GAWF-QAIYTGTGPIDNLFAHLADPGHATIFAAFTPK 272
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 119/213 (55%), Gaps = 39/213 (18%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P +LDGS PGDFGFDPL LG PE L+ + ++EL+H RWAMLAV IL
Sbjct: 63 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAG-----IL 117
Query: 109 VP---EALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--- 162
+P E+LGL +Q W G Y P T+LV + + +VE +R
Sbjct: 118 LPEWFESLGL---IQNFSW--YDAGSREYFADPT------TLLVAQLALMGWVEGRRWAD 166
Query: 163 -----SMEKD---PEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALL 206
S++ D P KKK YPGG FDP+ + + P+ + KEIKNGRLA+L
Sbjct: 167 LVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAML 226
Query: 207 AFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
AFVG Q+ Y G GPLENLA H+ADP H NI
Sbjct: 227 AFVGLWF-QAIYTGQGPLENLAAHVADPGHCNI 258
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 119/213 (55%), Gaps = 39/213 (18%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P +LDGS PGDFGFDPL LG PE L+ + ++EL+H RWAMLAV IL
Sbjct: 63 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAG-----IL 117
Query: 109 VP---EALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--- 162
+P E+LGL +Q W G Y P T+LV + + +VE +R
Sbjct: 118 LPEWFESLGL---IQNFSW--YDAGSREYFADPT------TLLVAQLALMGWVEGRRWAD 166
Query: 163 -----SMEKD---PEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALL 206
S++ D P KKK YPGG FDP+ + + P+ + KEIKNGRLA+L
Sbjct: 167 LVNPGSVDVDLKLPHKKKAMADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAML 226
Query: 207 AFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
AFVG Q+ Y G GPLENLA H+ADP H NI
Sbjct: 227 AFVGLWF-QAIYTGQGPLENLAAHVADPGHCNI 258
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 112/217 (51%), Gaps = 33/217 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG PP+LDGS PGDFGFDP LG PE+L ++EL+HCRWAML I
Sbjct: 51 WFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAG-----IF 105
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
+PE L + W G Q + T T+ V+E + I + E +R
Sbjct: 106 IPELLTKIGILNTPSWYTA-GEQEYFTDT-------TTLFVVELILIGWAEGRRWADIIK 157
Query: 163 --SMEKDP---------EKKKYPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFV 209
S+ DP YPGG FDPLG+ P+K +E + KEIKNGRLA+LA +
Sbjct: 158 PGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGYGNGSPEKLKELRTKEIKNGRLAMLAVM 217
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 246
G Q+ Y GTGP++NL HLADP H I P+
Sbjct: 218 GAWF-QAEYTGTGPIDNLFAHLADPGHATIFRAFAPK 253
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 106/195 (54%), Gaps = 11/195 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE R +E ++IHCRWAML + F +L
Sbjct: 64 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELQVIHCRWAMLGALGCVFPELLARN 122
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 167
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDG 181
Query: 168 P----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
P E YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF Q+ G GP
Sbjct: 182 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGF-FAQAIVTGKGP 240
Query: 224 LENLATHLADPWHNN 238
LENLA HLADP +NN
Sbjct: 241 LENLADHLADPVNNN 255
>gi|75101782|sp|Q36718.1|CB120_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-20, chloroplastic;
AltName: Full=LHCI type I CAB-1B-20; AltName:
Full=Light-harvesting complex I 20 kDa protein; Flags:
Precursor
gi|544702|gb|AAB29486.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 231
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 110/204 (53%), Gaps = 20/204 (9%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W+PG P YLDGS GD GFDPL L E PE+L + ++++++ RWAML V +L
Sbjct: 36 WLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAG-----ML 90
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDP 168
+PE L + A EW +PG + + + + +E +++ S+ +DP
Sbjct: 91 IPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQDP 150
Query: 169 EKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
K YPG F+PL F+ E K KE+ NGRLA+LAF+GF VQ + +
Sbjct: 151 IFKSYSLPPHECGYPGRVFNPLNFAP-----LENKEKELANGRLAMLAFLGFLVQHNVH- 204
Query: 220 GTGPLENLATHLADPWHNNIGDVI 243
G GP ENL HLADPWHN I I
Sbjct: 205 GKGPFENLQQHLADPWHNTIIQTI 228
>gi|194704284|gb|ACF86226.1| unknown [Zea mays]
Length = 269
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 118/214 (55%), Gaps = 35/214 (16%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFW 106
A W+PG PPYLDG+ PGDFGFDPL LGE PE L+ Y ++EL+HCR+AM V F
Sbjct: 63 ATWLPGLDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFTD 122
Query: 107 IL-VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME 165
+L V L W +A G A + + + ++ + F E +R M+
Sbjct: 123 LLRVSGNSDLPVWFEA--------GAAKF-----DFANTTALFFVQLFLMGFAETKRYMD 169
Query: 166 -KDP------------------EKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLAL 205
K+P ++ YPGG F+PLG +KD + + K+KEIKNGRLA+
Sbjct: 170 FKNPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAM 229
Query: 206 LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+A +GF VQ S GP++NL THL+DP++ NI
Sbjct: 230 VAMLGFMVQASVT-HAGPIDNLLTHLSDPFNKNI 262
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 97/257 (37%), Positives = 128/257 (49%), Gaps = 45/257 (17%)
Query: 14 TAFPSVLSSSKSKFFT--AVSL-------PAAANATSKYAMSAD---WMPGEPRPPYLDG 61
T F + + ++K+ F AVSL P A A+ + W PG PP+LDG
Sbjct: 29 TVFANNVGAAKASFLVGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDG 88
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQA 121
S P DFGFDPL LG PE L+ +SEL+HCRWAML I +PE L +
Sbjct: 89 SLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAG-----IFIPELLTKLGILNT 143
Query: 122 QEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP----- 168
W G+ Y T+ V+E + + + E +R S+ DP
Sbjct: 144 PSWYTA--GEQEYFTDKT------TLFVVEMIFLGWAEGRRWADIIKPGSVNTDPIFPNN 195
Query: 169 ----EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
YPGG FDPLG+ S P+K +E + KEIKNGRLA+LA +G Q+ Y GTG
Sbjct: 196 KLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWF-QAEYTGTG 254
Query: 223 PLENLATHLADPWHNNI 239
P++NL HLADP H +
Sbjct: 255 PIDNLLAHLADPGHATV 271
>gi|295798043|emb|CBL86548.1| chlorophyll a/b binding protein [Olea europaea]
Length = 179
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 105/165 (63%), Gaps = 10/165 (6%)
Query: 80 NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPV 139
L+R++E ELIH RW MLA + + L E L W A + V G A+YLG P+
Sbjct: 20 GLQRFRECELIHGRWGMLATLGA-----LTVEWLTGVTWQDAGKVELVEG--ASYLGQPL 72
Query: 140 PWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEI 198
P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG+F DPLG + DP+K ++ EI
Sbjct: 73 PF-SITTLIWIEVLVIGYIEFQRNAEVDPEKRXYPGGSFFDPLGLAADPEKKATLQLAEI 131
Query: 199 KNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
K+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 132 KHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTILDTF 175
>gi|226498858|ref|NP_001148187.1| LOC100281795 [Zea mays]
gi|195616580|gb|ACG30120.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 269
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 118/214 (55%), Gaps = 35/214 (16%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFW 106
A W+PG PPYLDG+ PGDFGFDPL LGE PE L+ Y ++EL+HCR+AM V F
Sbjct: 63 ATWLPGLDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFTD 122
Query: 107 IL-VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME 165
+L V L W +A G A + + + ++ + F E +R M+
Sbjct: 123 LLRVSGNSDLPVWFEA--------GAAKF-----DFANTTALFFVQLFLMGFAETKRYMD 169
Query: 166 -KDP------------------EKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLAL 205
K+P ++ YPGG F+PLG +KD + + K+KEIKNGRLA+
Sbjct: 170 FKNPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAM 229
Query: 206 LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+A +GF VQ S GP++NL THL+DP++ NI
Sbjct: 230 VAMLGFMVQASVT-HAGPIDNLLTHLSDPFNKNI 262
>gi|218191630|gb|EEC74057.1| hypothetical protein OsI_09055 [Oryza sativa Indica Group]
Length = 261
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 121/229 (52%), Gaps = 39/229 (17%)
Query: 34 PAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCR 93
P A A A W+PG PP+LDG+ PGDFGFDPL LGE P NL+ Y ++EL+HCR
Sbjct: 42 PRARIAVRASTERATWLPGLDPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCR 101
Query: 94 WAMLAV---VSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVI 150
+AM V +++ F I V L W +A T + + +
Sbjct: 102 FAMAGVAGILATDF--IRVSGINNLPVWFEAG-------------ATKFDFANTTALFFV 146
Query: 151 EFLSIAFVEHQRSME-KDPEKKK------------------YPGG-AFDPLGFSKDPQKF 190
+ L + F E +R M+ +P + YPGG F+PLG +KD +
Sbjct: 147 QLLLMGFAETKRYMDFINPGSQAEEGTFLGIEAALAGSQPGYPGGPLFNPLGLAKDIENA 206
Query: 191 EEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+E K+KEIKNGRLA++A +GF VQ S GP++NL THL+DP++ NI
Sbjct: 207 DEAKLKEIKNGRLAMVAMLGFIVQASVT-HVGPIDNLLTHLSDPFNKNI 254
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 97/257 (37%), Positives = 128/257 (49%), Gaps = 45/257 (17%)
Query: 14 TAFPSVLSSSKSKFFT--AVSL-------PAAANATSKYAMSAD---WMPGEPRPPYLDG 61
T F + + ++K+ F AVSL P A A+ + W PG PP+LDG
Sbjct: 29 TVFANNVGAAKASFLVGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDG 88
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQA 121
S P DFGFDPL LG PE L+ +SEL+HCRWAML I +PE L +
Sbjct: 89 SLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAG-----IFIPELLTKLGILNT 143
Query: 122 QEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP----- 168
W G+ Y T+ V+E + + + E +R S+ DP
Sbjct: 144 PSWYTA--GELEYFTDKT------TLFVVEMIFLGWAEGRRWADIIKPGSVNTDPIFPNN 195
Query: 169 ----EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
YPGG FDPLG+ S P+K +E + KEIKNGRLA+LA +G Q+ Y GTG
Sbjct: 196 KLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWF-QAEYTGTG 254
Query: 223 PLENLATHLADPWHNNI 239
P++NL HLADP H +
Sbjct: 255 PIDNLLAHLADPGHATV 271
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 109/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE R +E E+IHCRWAML + F +L
Sbjct: 60 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLA 118
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR--- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 119 RNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG 177
Query: 163 ---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLGF+ DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 178 GPLGEVTDP---LYPGGSFDPLGFADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 233
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 234 GKGPLENLADHLADPVNNN 252
>gi|302831910|ref|XP_002947520.1| light harvesting complex A [Volvox carteri f. nagariensis]
gi|300267384|gb|EFJ51568.1| light harvesting complex A [Volvox carteri f. nagariensis]
Length = 264
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 115/212 (54%), Gaps = 37/212 (17%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
WMPG P YLDG+ PGDFGFDPL LG P L+ Y ++EL+H R+AMLAV IL
Sbjct: 61 WMPGATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAG-----IL 115
Query: 109 VPEAL-GLG-NWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR---- 162
VPE L +G +W A A G+ Y ++ ++ L A+ E +R
Sbjct: 116 VPELLTNIGFSWPGAGV-AWYDAGKFQYFAPA------SSLFGVQMLLFAWAELRRYQDF 168
Query: 163 ----SMEKDP----------EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAF 208
S +DP + YPGG FDP G+SK K K KEIKNGRLA+LAF
Sbjct: 169 VKPGSANQDPIFSNNKLPDGNEPGYPGGIFDPFGWSKGDMK--SLKTKEIKNGRLAMLAF 226
Query: 209 VGFCVQQSAY-PGTGPLENLATHLADPWHNNI 239
GF Q AY GT PL+NLATHLADPW +
Sbjct: 227 AGFAAQ--AYTTGTTPLKNLATHLADPWATTV 256
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 113/217 (52%), Gaps = 33/217 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG PP+LDGS PGDFGFDP LG PE+L ++EL+HCRWAML I
Sbjct: 58 WFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAG-----IF 112
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
+PE L + W G Q + T T+ +IE + I + E +R
Sbjct: 113 IPEFLTKIGVLNTPFWYTA-GEQQYFTDT-------TTLFIIELILIGWAEGRRWADIIK 164
Query: 163 --SMEKDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFV 209
S+ DP YPGG FDPLG+ S P+K +E + KEIKNGRLA+LA +
Sbjct: 165 PGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 224
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 246
G Q+ Y GTGP++NL HLADP H I P+
Sbjct: 225 GAWF-QAEYTGTGPIDNLFAHLADPGHATIFQAFTPK 260
>gi|115448873|ref|NP_001048216.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|46805727|dbj|BAD17114.1| putative light-harvesting chlorophyll-a/b protein of photosystem I
[Oryza sativa Japonica Group]
gi|113537747|dbj|BAF10130.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|215694704|dbj|BAG89895.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623725|gb|EEE57857.1| hypothetical protein OsJ_08493 [Oryza sativa Japonica Group]
Length = 261
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 121/232 (52%), Gaps = 45/232 (19%)
Query: 34 PAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCR 93
P A A A W+PG PP+LDG+ PGDFGFDPL LGE P NL+ Y ++EL+HCR
Sbjct: 42 PRARIAVRASTERATWLPGLDPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCR 101
Query: 94 WAMLAVVSSKFFWILVPEAL---GLGN---WVQAQEWAAVPGGQATYLGTPVPWGTLPTI 147
+AM V IL + + G+ N W +A T + +
Sbjct: 102 FAMAGVAG-----ILATDLIRVSGINNLPVWFEAG-------------ATKFDFANTTAL 143
Query: 148 LVIEFLSIAFVEHQRSME-KDPEKKK------------------YPGG-AFDPLGFSKDP 187
++ L + F E +R M+ +P + YPGG F+PLG +KD
Sbjct: 144 FFVQLLLMGFAETKRYMDFINPGSQAEEGTFLGIEAALAGSQPGYPGGPLFNPLGLAKDI 203
Query: 188 QKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+ +E K+KEIKNGRLA++A +GF VQ S GP++NL THL+DP++ NI
Sbjct: 204 ENADEAKLKEIKNGRLAMVAMLGFIVQASVT-HVGPIDNLLTHLSDPFNKNI 254
>gi|326498823|dbj|BAK02397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508330|dbj|BAJ99432.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 310
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 88/205 (42%), Positives = 114/205 (55%), Gaps = 27/205 (13%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P +L G PGD+GFD LG P Y E++HCRWAMLA + ++VPE L L
Sbjct: 107 PEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALG-----VVVPELLDL 161
Query: 116 GNWVQAQE-------WAAVPGGQATYLGTP---VPWGT-LPTILVIEFLSIAFVEHQRSM 164
V E +A + G YLG P + G + I + + L + E+ R
Sbjct: 162 FGIVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGIIVIAICQVLLMVGPEYARYC 221
Query: 165 EKD---------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
+ P YPGGA FDPLG SKDP FEE+KVKEIKNGRLA++A++GF +
Sbjct: 222 GIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEEFKVKEIKNGRLAMVAWIGFYI- 280
Query: 215 QSAYPGTGPLENLATHLADPWHNNI 239
Q+A G GP++NLA HL+DP HNNI
Sbjct: 281 QAAVTGKGPVQNLAEHLSDPLHNNI 305
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 113/217 (52%), Gaps = 33/217 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG PP+LDGS PGDFGFDP LG PE+L ++EL+HCRWAML I
Sbjct: 68 WFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAG-----IF 122
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
+PE L + W G Q + T T+ +IE + I + E +R
Sbjct: 123 IPEFLTKIGVLNTPFWYTA-GEQQYFTDT-------TTLFIIELILIGWAEGRRWADIIK 174
Query: 163 --SMEKDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFV 209
S+ DP YPGG FDPLG+ S P+K +E + KEIKNGRLA+LA +
Sbjct: 175 PGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 234
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 246
G Q+ Y GTGP++NL HLADP H I P+
Sbjct: 235 GAWF-QAEYTGTGPIDNLFAHLADPGHATIFQAFTPK 270
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 116/214 (54%), Gaps = 34/214 (15%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFW 106
A W+PG PPYLDG GD+GFDPL LGE PE+L Y ++EL+H R+AML V F
Sbjct: 47 ATWLPGLDPPPYLDGKLAGDYGFDPLGLGEDPESLRWYVQAELVHSRFAMLGVAGILFTD 106
Query: 107 ILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK 166
+L G+ N E AV + + T++V++FL + F E +R ++
Sbjct: 107 LL--RTTGIRNLPVWYEAGAV----------KFDFASTKTLIVVQFLLMGFAETKRYVDY 154
Query: 167 --------------------DPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLAL 205
+ + YPGG +PLG +KD + ++K+KEIKNGRLA+
Sbjct: 155 VSPGSQAKEGSFFFGIEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAM 214
Query: 206 LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+A +GF VQ S TGP++NL HL++PWH I
Sbjct: 215 MAMLGFFVQASV-THTGPIDNLVEHLSNPWHKTI 247
>gi|413939030|gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 315
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 118/214 (55%), Gaps = 35/214 (16%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFW 106
A W+PG PPYLDG+ PGDFGFDPL LGE PE L+ Y ++EL+HCR+AM V F
Sbjct: 109 ATWLPGLDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFTD 168
Query: 107 IL-VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME 165
+L V L W +A G A + + + ++ + F E +R M+
Sbjct: 169 LLRVSGNSDLPVWFEA--------GAAKF-----DFANTTALFFVQLFLMGFAETKRYMD 215
Query: 166 -KDP------------------EKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLAL 205
K+P ++ YPGG F+PLG +KD + + K+KEIKNGRLA+
Sbjct: 216 FKNPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAM 275
Query: 206 LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+A +GF VQ S GP++NL THL+DP++ NI
Sbjct: 276 VAMLGFMVQASVT-HAGPIDNLLTHLSDPFNKNI 308
>gi|384251522|gb|EIE24999.1| light-harvesting chlorophyll a/b-binding protein Lhca3 [Coccomyxa
subellipsoidea C-169]
Length = 274
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 119/222 (53%), Gaps = 33/222 (14%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P YL+G GD+G+DPL LG PE L+ Y+++EL+H RWAMLAV IL
Sbjct: 47 WAPGVEAPSYLNGELAGDYGWDPLGLGAKPEALKWYRQAELVHARWAMLAVAG-----IL 101
Query: 109 VPEALGLGNWV-QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR----- 162
E + G + A +PG G P L +L EFL +VE +R
Sbjct: 102 AQEIVKPGVFFYNAGLPENLPG---INFGGPEGKVNLGGLLAWEFLLFHWVEVRRWQDIK 158
Query: 163 ---SMEKDPEKK---------KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVG 210
S+ +DP K YPGG FDP GFSK F+E + KEIKNGRLA++AFVG
Sbjct: 159 KKDSVNQDPIFKGNKVPNPELGYPGGIFDPFGFSKG--NFKEVQTKEIKNGRLAMVAFVG 216
Query: 211 FCVQQSAYPGTGPLENLATHLADPWHN----NIGDVIIPRGI 248
F +Q A G GPL NL HLA+P+ N NIG IP +
Sbjct: 217 FIIQAQAT-GQGPLANLGAHLANPFGNNITKNIGTCAIPSSV 257
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 131/268 (48%), Gaps = 41/268 (15%)
Query: 6 LMSCGIATTAFPS-VLSSSKSKFFTAVSLPAAANATSKYAM----------SADWMP--- 51
+ SCGI + AF +SS K + + A + ++ M SA P
Sbjct: 1 MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYG 60
Query: 52 -----------GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVV 100
GEP P YL G PGD+G+D L PEN + +E E+IHCRWAML +
Sbjct: 61 PDRVLYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGAL 119
Query: 101 SSKFFWILVPEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIA 156
F +L + G W +A GG YLG P V ++ I + + +
Sbjct: 120 GCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMG 178
Query: 157 FVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVG 210
VE R DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + G
Sbjct: 179 AVEGYRIAGGPLGEVTDP---IYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 235
Query: 211 FCVQQSAYPGTGPLENLATHLADPWHNN 238
F V Q+ G GP+ENLA HLADP +NN
Sbjct: 236 FFV-QAIVTGKGPIENLADHLADPVNNN 262
>gi|242066618|ref|XP_002454598.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
gi|241934429|gb|EES07574.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
Length = 266
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 118/212 (55%), Gaps = 35/212 (16%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W+PG PP+LDG+ PGDFGFDPL LGE P +L+ Y ++EL+HCR+AM V F +L
Sbjct: 62 WLPGLDPPPHLDGTLPGDFGFDPLGLGEDPASLKWYVQAELVHCRFAMAGVAGILFTDLL 121
Query: 109 -VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-K 166
V L W +A G A + + + ++ L + F E +R M+ K
Sbjct: 122 RVSGNSDLPVWFEA--------GAAKF-----EFANTTALFFVQLLLMGFAETKRYMDFK 168
Query: 167 DP------------------EKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLA 207
+P ++ YPGG F+PLG +KD + E K+KEIKNGRLA++A
Sbjct: 169 NPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHEEKLKEIKNGRLAMVA 228
Query: 208 FVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+GF VQ S GP++NL THL+DP++ NI
Sbjct: 229 MLGFMVQASVT-HAGPIDNLLTHLSDPFNKNI 259
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 104/193 (53%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E E+IHCRWAML + F IL
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VTFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPL 181
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 182 GEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 240
Query: 226 NLATHLADPWHNN 238
NL H+ADP NN
Sbjct: 241 NLYDHVADPVANN 253
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 104/193 (53%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E E+IHCRWAML + F IL
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P V ++ I + + + FVE R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPL 181
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 182 GEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 240
Query: 226 NLATHLADPWHNN 238
NL+ H+ DP NN
Sbjct: 241 NLSDHINDPVANN 253
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 105/193 (54%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E E+IHCRWAML + F IL
Sbjct: 35 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNG 94
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 95 VTFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPL 153
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 154 GEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 212
Query: 226 NLATHLADPWHNN 238
NL+ H+ADP NN
Sbjct: 213 NLSDHIADPVANN 225
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 106/195 (54%), Gaps = 11/195 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE R +E E+IH RWAML + F +L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 121
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 167
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGSQIFSDGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDG 180
Query: 168 P----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
P E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP
Sbjct: 181 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGP 239
Query: 224 LENLATHLADPWHNN 238
LENLA HLADP +NN
Sbjct: 240 LENLADHLADPVNNN 254
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 110/196 (56%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL+G PGD+G+DP L + PE+ +Y+ ELIH RWAML +KF
Sbjct: 89 PEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 148
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + G Y G +P L ++ E + + E+ R + D
Sbjct: 149 GPEAV----WFKTGALL-LDGNTLYYFGKNIPI-NLVLAVIAEVVLVGGAEYYRIINGLD 202
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG +KDP + KVKEIKNGRLA+ + +GF + Q+ G GP+ENL
Sbjct: 203 LEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFSMLGFFI-QAYVTGQGPVENL 261
Query: 228 ATHLADPWHNNIGDVI 243
A HL+DP+ NN+ VI
Sbjct: 262 AAHLSDPFGNNLLTVI 277
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 107/196 (54%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+DP L + PE+ +Y+ ELIH RWAML ++PEA
Sbjct: 91 PEYLTGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAG-----FIIPEAFNK 145
Query: 116 --GNWVQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
N W + GG Y G P+P L ++ E + + E+ R + +
Sbjct: 146 YGANCGPEAVWFKTGALLLDGGTLNYFGKPIPI-NLIVAVIAEIVLVGGAEYYRIINGLN 204
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG + DP + KVKEIKNGRLA+ A +GF Q+ G GP+ENL
Sbjct: 205 FEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYF-QAYVTGEGPVENL 263
Query: 228 ATHLADPWHNNIGDVI 243
A HL+DP+ NN+ VI
Sbjct: 264 AKHLSDPFGNNLLTVI 279
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 125/255 (49%), Gaps = 39/255 (15%)
Query: 17 PSVLSSSKSKFFTAVSLPAAANATSKYAMSAD------WMPGEPRPPYLDGSAPGDFGFD 70
PS L+ K + +S+PA + + + A W PG P +LDGS PGDFGFD
Sbjct: 16 PSFLAGKKLRLNKKLSVPAVSKSAASVRAVAADPERPIWFPGSTPPEWLDGSLPGDFGFD 75
Query: 71 PLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGG 130
PL L PE+L+ ++E++HCRWAML I +PE L + W G
Sbjct: 76 PLGLSSDPESLKWNVQAEIVHCRWAMLGAAG-----IFIPEFLTKIGILNTPSWYTA--G 128
Query: 131 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKY 173
+ Y T+ V+E + I + E +R S+ DP Y
Sbjct: 129 EQEYFTDKT------TLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGY 182
Query: 174 PGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 231
PGG FDPLG+ S P K +E + KEIKNGRLA+LA +G Q Y GTGP++NL HL
Sbjct: 183 PGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHL 241
Query: 232 ADPWHNNIGDVIIPR 246
ADP H I P+
Sbjct: 242 ADPGHATIFAAFTPK 256
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 107/196 (54%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+DP L + PE+ +Y+ ELIH RWAML ++PEA
Sbjct: 93 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAG-----FIIPEAFNK 147
Query: 116 --GNWVQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
N W + GG Y G P+P L ++ E + + E+ R + +
Sbjct: 148 YGANCGPEAVWFKTGALLLDGGTLNYFGKPIPI-NLIVAVIAEIVLVGGAEYYRIINGLN 206
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG + DP + KVKEIKNGRLA+ A +GF Q+ G GP+ENL
Sbjct: 207 FEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYF-QAYVTGEGPVENL 265
Query: 228 ATHLADPWHNNIGDVI 243
A HL+DP+ NN+ VI
Sbjct: 266 AKHLSDPFGNNLLTVI 281
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 106/195 (54%), Gaps = 11/195 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE R +E E+IH RWAML + F +L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 121
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 167
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 122 GVEFGEAVWFKAGSQIFSDGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDG 180
Query: 168 P----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
P E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP
Sbjct: 181 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGP 239
Query: 224 LENLATHLADPWHNN 238
LENLA HLADP +NN
Sbjct: 240 LENLADHLADPVNNN 254
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 106/195 (54%), Gaps = 11/195 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE R +E E+IH RWAML + F +L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 120
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 167
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGSQIFSDGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDG 179
Query: 168 P----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
P E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP
Sbjct: 180 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGP 238
Query: 224 LENLATHLADPWHNN 238
LENLA HLADP +NN
Sbjct: 239 LENLADHLADPVNNN 253
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 122/246 (49%), Gaps = 36/246 (14%)
Query: 20 LSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE 79
L+++ + ++P A A + W PG PP+LDGS PGDFGFDPL L PE
Sbjct: 43 LNAAATAVVAPRTVPVCAAADPDRPL---WFPGSTPPPWLDGSLPGDFGFDPLGLASDPE 99
Query: 80 NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPV 139
+L +++EL+HCRWAML I +PE L + W G+ Y
Sbjct: 100 SLRWNQQAELVHCRWAMLGAAG-----IFIPEFLTKIGILNTPSWYTA--GELEYFTDTT 152
Query: 140 PWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPL 181
T+ ++E + I + E +R + DP YPGG FDPL
Sbjct: 153 ------TLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPL 206
Query: 182 GF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 240
G+ S P+K +E + KEIKNGRLA+LA +G Q Y GTGP++NL HLADP H +
Sbjct: 207 GWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGHATVF 265
Query: 241 DVIIPR 246
P+
Sbjct: 266 AAFTPK 271
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 114/224 (50%), Gaps = 37/224 (16%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-G 114
P YL+G+ GD+G+DPL LG+ +E+Y+ ELIH RWAMLA I++PE L
Sbjct: 113 PTYLNGTLAGDYGYDPLGLGKDTATVEKYRAYELIHARWAMLAAAG-----IIIPEGLQA 167
Query: 115 LGNWVQAQEW-----AAVPGGQATYLGTPVPWGTLPT------ILVIEFLSIAFVEHQRS 163
G ++ W + GG Y VPWG + ++VIE + VE R
Sbjct: 168 NGAAIKGGTWFETGAEMLNGGTLNYF--AVPWGIINNPLPLFLVVVIEVALLGAVERYRQ 225
Query: 164 MEKDPE-----------------KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALL 206
+ P YPGG FDPLG + DP+ F E KVKEIKNGRLAL+
Sbjct: 226 SGEGPPGYSPGVGKFDSSIFSGLDNLYPGGPFDPLGLADDPETFAELKVKEIKNGRLALI 285
Query: 207 AFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP 250
+ +GF V QS G GP N + H+ADP+ N+ +I VP
Sbjct: 286 SVLGFAV-QSYVTGEGPYANWSKHVADPFGYNLLTIIGAEDRVP 328
>gi|87313171|gb|ABD37882.1| light-harvesting chlorophyll-a/b binding protein Lhca4.2
[Mesostigma viride]
gi|145079732|tpg|DAA05926.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca5 [Mesostigma viride]
Length = 246
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 110/212 (51%), Gaps = 38/212 (17%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV---VSSKFF 105
W PG P P YLDGS PGDFG+DPL L P+ L+ ++EL + RWAML V +S
Sbjct: 46 WCPGIPAPSYLDGSLPGDFGYDPLSLSNSPDKLKWMVQAELQNARWAMLGVAGMLSVDLL 105
Query: 106 WILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--- 162
++P+ +W P Y P W +L +I+ + + FVE +R
Sbjct: 106 QGILPD--------NVPQWYDAPLLADVY---PAEWKSL---FIIQMILMGFVEARRWAD 151
Query: 163 -----SMEKDPEKKK----------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLA 207
S DP YPGG FDPLGFSK EE K KE++NGRLA++A
Sbjct: 152 INTPGSANVDPVFNNNKLPDSGTPGYPGGMFDPLGFSKG--NLEESKWKELRNGRLAMVA 209
Query: 208 FVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+G +Q A G PL NLA HLADPWHNN+
Sbjct: 210 SLGMFIQYDAT-GKSPLTNLADHLADPWHNNV 240
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/260 (36%), Positives = 128/260 (49%), Gaps = 45/260 (17%)
Query: 18 SVLSSSKSKFFTAVSL-------PAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPG 65
S++ ++K+ F L P + + + A++AD W PG P +LDGS PG
Sbjct: 25 SIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPG 84
Query: 66 DFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
DFGFDPL LG PE+L+ ++EL+H RWAML I +PE L + W
Sbjct: 85 DFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAG-----IFIPEFLTKIGVLNTPSWY 139
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP--------- 168
G Q + T T+ VIE + I + E +R + DP
Sbjct: 140 TA-GEQEYFTDT-------TTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG 191
Query: 169 EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
YPGG FDPLG+ S P K +E + KEIKNGRLA+LA +G Q Y GTGP++N
Sbjct: 192 TDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDN 250
Query: 227 LATHLADPWHNNIGDVIIPR 246
L HLADP H I P+
Sbjct: 251 LFAHLADPGHATIFAAFSPK 270
>gi|125605083|gb|EAZ44119.1| hypothetical protein OsJ_28744 [Oryza sativa Japonica Group]
Length = 245
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 125/242 (51%), Gaps = 29/242 (11%)
Query: 21 SSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPR--PPYLDGSAPGDFGFDPLRLGEVP 78
S+ + F+AV A + S A+ P P +L G PGD+GFD LG P
Sbjct: 5 ESTCQRAFSAVLFGAEMSKFSTMRFDAEQKGPVPYEYPAHLTGEYPGDYGFDIAGLGRDP 64
Query: 79 ENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQE-------WAAVPGGQ 131
Y E++HCRWAMLA + ++VPE L L V E +A + G
Sbjct: 65 VAFANYFNFEILHCRWAMLAALG-----VVVPELLDLFGVVHFVEPVWWKVGYAKLQGDT 119
Query: 132 ATYLGTP---VPWGT-LPTILVIEFLSIAFVEHQRSMEKD---------PEKKKYPGGA- 177
YLG P + G + I + + L + E+ R + P YPGGA
Sbjct: 120 LDYLGIPGFRIAGGQGVIVIAICQALLMVGPEYARYCGIEALEPLGLYLPGDINYPGGAL 179
Query: 178 FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 237
FDPLG SKDP FE+ KVKEIKNGRLA++A++GF + Q+A G GP++NL HL+DP HN
Sbjct: 180 FDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYI-QAAVTGKGPIQNLVEHLSDPLHN 238
Query: 238 NI 239
NI
Sbjct: 239 NI 240
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 108/196 (55%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL G PGD+G+DP L + PE+ +Y+ ELIH RWAML +KF
Sbjct: 92 PAYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 151
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + G Y G +P + + V E + + E+ R + D
Sbjct: 152 GPEAV----WFKTGALL-LDGNTLNYFGKNIPINLIFAV-VAEVVLVGGAEYYRIINGLD 205
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG + DP + KVKEIKNGRLA+ A +GF + Q+ G GP+ENL
Sbjct: 206 LEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFFI-QAYVTGEGPVENL 264
Query: 228 ATHLADPWHNNIGDVI 243
A HL+DP+ NN+ VI
Sbjct: 265 AAHLSDPFGNNLLTVI 280
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 104/193 (53%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R E E+IHCRWAML + F IL
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNLELEVIHCRWAMLGALGCVFPEILSKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VTFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPL 181
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 182 GEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 240
Query: 226 NLATHLADPWHNN 238
NL+ H+ADP NN
Sbjct: 241 NLSDHIADPVANN 253
>gi|375152222|gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/205 (42%), Positives = 112/205 (54%), Gaps = 27/205 (13%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P +LDG PGD+GFD LG P Y E++HCRWAML + ++VPE L L
Sbjct: 3 PEHLDGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLGALG-----VVVPELLDL 57
Query: 116 GNWVQAQE-------WAAVPGGQATYLGTP---VPWGT-LPTILVIEFLSIAFVEHQRSM 164
V E +A + G YLG P + G + I + + L + E+ R
Sbjct: 58 FGIVHFVEPVWWKVGYAKLQGDTLDYLGIPGLRIAGGQGIIVIAICQALLMVGPEYARYC 117
Query: 165 EKD---------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
+ P YPGGA FDPLG SKDP FEE KVKEIKNGRLA++A++GF V
Sbjct: 118 GIEALEPLGIYLPGDLNYPGGALFDPLGLSKDPVAFEELKVKEIKNGRLAMVAWLGFYV- 176
Query: 215 QSAYPGTGPLENLATHLADPWHNNI 239
Q+A G GP++NL HL+DP HNNI
Sbjct: 177 QAAVTGKGPVQNLIEHLSDPLHNNI 201
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 106/195 (54%), Gaps = 11/195 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE R +E E+IH RWAML + F +L
Sbjct: 42 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 100
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 167
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 101 GVKFGEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNG 159
Query: 168 P----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
P E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP
Sbjct: 160 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGP 218
Query: 224 LENLATHLADPWHNN 238
LENLA HLADP +NN
Sbjct: 219 LENLADHLADPVNNN 233
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 111/196 (56%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAML----AVV---SSKFFWIL 108
P YL G PGD+G+DP LG+ PE+ +Y+ ELIH RWAML AV+ +KF
Sbjct: 84 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 143
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + G Y G +P L ++ E + + E+ R + D
Sbjct: 144 GPEAV----WFKTGAL-LLDGNTLNYFGNSIPI-NLVVAVIAEVVLVGGAEYYRIINGLD 197
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG + DP + KVKEIKNGRLA+ + + F + Q+ G GP+ENL
Sbjct: 198 LEDKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFSMLAFFI-QAYVTGEGPVENL 256
Query: 228 ATHLADPWHNNIGDVI 243
A HL+DP+ NN+ VI
Sbjct: 257 AKHLSDPFGNNLLTVI 272
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 111/196 (56%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAML----AVV---SSKFFWIL 108
P YL G PGD+G+DP LG+ PE+ +Y+ ELIH RWAML AV+ +KF
Sbjct: 85 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 144
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + G +Y G +P L ++ E + + E+ R + D
Sbjct: 145 GPEAV----WFKTGAL-LLDGNTLSYFGNSIPI-NLVVAVIAEVVLVGGAEYYRIINGLD 198
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG + DP + KVKEIKNGRLA+ + F + Q+ G GP+ENL
Sbjct: 199 LEDKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFSMFAFFI-QAYVTGEGPVENL 257
Query: 228 ATHLADPWHNNIGDVI 243
A HL+DP+ NN+ VI
Sbjct: 258 AKHLSDPFGNNLLTVI 273
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 112/210 (53%), Gaps = 33/210 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P +LDGS PGDFGFDPL LG PE L + ++EL+H RWAMLAV IL
Sbjct: 27 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAG-----IL 81
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME--- 165
+PE L +++ W G + P T+ V++ + +VE +R +
Sbjct: 82 IPECLERLGFIENFSW--YDAGAQEFFADPT------TLFVVQLALMGWVEGRRWADLIN 133
Query: 166 --------KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFV 209
P K K YPGG FDP + + P+ + KEIKNGRLA+LAFV
Sbjct: 134 PGCVDIQLTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLAMLAFV 193
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GFC Q+ Y G GP+ENL H+ADP H N+
Sbjct: 194 GFCF-QAIYTGEGPIENLMAHIADPGHCNV 222
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/273 (36%), Positives = 136/273 (49%), Gaps = 47/273 (17%)
Query: 7 MSCGIATTAFPSVLSSSKS-KFF---TAVSLPAAANATSKYAMSAD----------WMPG 52
M+ I++TA + ++ K K F TA LP + +K +S W PG
Sbjct: 1 MALSISSTALSTFPNTEKRHKVFPERTATWLPRRIHTNAKKGVSDVCEPLPPDRPLWFPG 60
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
P +LDGS PGDFGFDP+ LG PE L+ ++EL+H RWAML V IL+PE
Sbjct: 61 SSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSG-----ILIPEL 115
Query: 113 LGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SM 164
L +V+ W G Y P T+ +++ + +VE +R S+
Sbjct: 116 LEKMGYVENYSWYEA--GTQEYFADPT------TLFIVQLALMGWVEGRRWADLVNPGSV 167
Query: 165 EKDPEKKK---------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCV 213
+ +P+ YPGG FDP+ + + P+ + KEIKNGRLA+LAFVGF
Sbjct: 168 DIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWF 227
Query: 214 QQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 246
Q+ Y G GP+ENL HLADP H NI R
Sbjct: 228 -QAIYTGQGPIENLMAHLADPGHCNIFSAFTSR 259
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 109/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 235
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA H+ADP +NN
Sbjct: 236 GKGPLENLADHIADPVNNN 254
>gi|575349|emb|CAA57877.1| light-harvesting chlorophyll a /b binding protein [Nicotiana
tabacum]
Length = 200
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 111/211 (52%), Gaps = 35/211 (16%)
Query: 46 SADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFF 105
W+PG P YLDGS PGD GF PL L E PENL+ + ++EL++ RWAML V
Sbjct: 2 KGQWLPGLASPTYLDGSLPGDXGFAPLGLAEDPENLKWFVQAELVNVRWAMLGVAG---- 57
Query: 106 WILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--- 162
+L+PE + +W G+ Y + T+ VIEF+ +VE +R
Sbjct: 58 -MLLPEVFTNIGILNVPKW--YDAGKEEYFASS------STLFVIEFILFHYVEIRRWQD 108
Query: 163 -----SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAF 208
S+ + P K YPGG F+PL F+ E K KEI NGRLA+LAF
Sbjct: 109 IKNPGSVNQXPIFKNYSLPPNEVGYPGGIFNPLNFAPT----AEAKEKEIANGRLAMLAF 164
Query: 209 VGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+GF VQ + G GP +NL HL+DPWHN I
Sbjct: 165 LGFIVQHNVV-GKGPFDNLLQHLSDPWHNTI 194
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE R +E E+IHCRWAML + F +L
Sbjct: 60 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLA 118
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR--- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 119 RNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG 177
Query: 163 ---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 178 GPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 233
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 234 GKGPLENLADHLADPVNNN 252
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 106/195 (54%), Gaps = 11/195 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE R +E E+IH RWAML + F +L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 121
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 167
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGSQIFSDGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNG 180
Query: 168 P----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
P E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP
Sbjct: 181 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGP 239
Query: 224 LENLATHLADPWHNN 238
LENL+ HLADP +NN
Sbjct: 240 LENLSDHLADPVNNN 254
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 59 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 117
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 118 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 176
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 177 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 232
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 233 GKGPLENLADHLADPVNNN 251
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSDGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFV-QAIVT 234
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 113/210 (53%), Gaps = 33/210 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P +LDGS PGDFGFDPL LG PE+L+ + ++ELIH RWAMLA IL
Sbjct: 59 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAG-----IL 113
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME--- 165
+PE L ++ W G Y P T+ V++ + + ++E +R +
Sbjct: 114 IPEWLERLGFIDNFNW--FDAGTREYFADPT------TLFVVQLILMGWIEGRRWADMIK 165
Query: 166 --------KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFV 209
K P K K YPGG FDP + + P+ + KEIKNGRLA+LAFV
Sbjct: 166 PGCVDIDPKLPHKTKPKPDVGYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNGRLAMLAFV 225
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GF Q+ Y G GP++NL H+ADP H NI
Sbjct: 226 GFWF-QAIYTGEGPIDNLMAHIADPGHCNI 254
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 98/258 (37%), Positives = 127/258 (49%), Gaps = 27/258 (10%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADW-----------M 50
AS T +S A A SSS+ V++ AN + + W
Sbjct: 3 ASTTALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPF 62
Query: 51 PGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVP 110
GE P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 63 SGE-SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 121
Query: 111 EALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
+ G W +A GG YLG P V ++ I + + + VE R +
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGE 180
Query: 167 ------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 181 PLGEVVDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QALVTG 236
Query: 221 TGPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 237 KGPLENLADHLADPVNNN 254
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 235
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA H+ADP +NN
Sbjct: 236 GKGPLENLADHIADPVNNN 254
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 113/210 (53%), Gaps = 33/210 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P +LDGS PGDFGFDPL LG PE+L+ + ++ELIH RWAMLA IL
Sbjct: 59 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAG-----IL 113
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME--- 165
+PE L ++ W G Y P T+ V++ + + ++E +R +
Sbjct: 114 IPEWLERLGFIDNFNW--FDAGTREYFADPT------TLFVVQLILMGWIEGRRWADMIK 165
Query: 166 --------KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFV 209
K P K K YPGG FDP + + P+ + KEIKNGRLA+LAFV
Sbjct: 166 PGCVDIDPKLPHKTKPKPDIGYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNGRLAMLAFV 225
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GF Q+ Y G GP++NL H+ADP H NI
Sbjct: 226 GFWF-QAIYTGEGPIDNLMAHIADPGHCNI 254
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 104/191 (54%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE R +E E+IH RWAML + F +L +
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP--- 168
G W +A GG YLG P V ++ I + + + VE R +P
Sbjct: 127 GEAVWFKAGSQIFSDGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNEPLGE 185
Query: 169 -EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 186 AEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENL 244
Query: 228 ATHLADPWHNN 238
A HLADP +NN
Sbjct: 245 ADHLADPVNNN 255
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 107/196 (54%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+DP L + PE+ +Y+ ELIH RWAML ++PEA
Sbjct: 91 PEYLTGEVPGDYGYDPSGLSKKPEDFSKYQAFELIHARWAMLGAAG-----FIIPEAFNK 145
Query: 116 --GNWVQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
N W + GG Y G P+P L ++ E + + E+ R + +
Sbjct: 146 YGANCGPEAVWFKTGALLLDGGTLNYFGKPIPI-NLIVAVIAEIVLVGGAEYYRIINGLN 204
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG + DP + KVKEIKNGRLA+ A +GF Q+ G GP+ENL
Sbjct: 205 FEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYF-QAYVTGEGPVENL 263
Query: 228 ATHLADPWHNNIGDVI 243
A HL+DP+ NN+ VI
Sbjct: 264 AKHLSDPFGNNLLTVI 279
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 107/197 (54%), Gaps = 20/197 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D L PE RY+E ELIH RWA+L + IL PE L
Sbjct: 54 PSYLKGEFPGDYGWDTAGLSADPETFARYREIELIHSRWALLGALG-----ILTPEYLQR 108
Query: 114 -GLGNWVQAQEW----AAVPGGQA-TYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
G ++ +A W A++ G YLG P + ++ L+ + + + E R
Sbjct: 109 SGAVDFGEAAVWFKAGASIFGDDGLNYLGNPQLIHAQSIVATLLAQIVLVGTAEAYRYAG 168
Query: 166 KDP----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
+ P K YPGG FDPLG DP+ E KVKEIKNGRLA ++ GF V Q+ G
Sbjct: 169 EGPVDTSGDKLYPGGFFDPLGLGDDPEALAELKVKEIKNGRLAQVSVFGFFV-QALVTGK 227
Query: 222 GPLENLATHLADPWHNN 238
GPLENL HLADPW+NN
Sbjct: 228 GPLENLDDHLADPWNNN 244
>gi|74272669|gb|ABA01130.1| chloroplast light harvesting complex I protein [Chlamydomonas
incerta]
Length = 241
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 124/242 (51%), Gaps = 34/242 (14%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77
S+++ ++ F+A P A A + W PG P P +LDG+ GD+GFDPL LG+
Sbjct: 4 SMIAQRRAGAFSARQAPRAVRAQA--LTRPVWFPGNPAPAHLDGTLAGDYGFDPLFLGQE 61
Query: 78 PENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGT 137
E L Y ++EL+H R+AML I LG W A G+
Sbjct: 62 KETLRWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGFPEWYDA--------GKVVVEKN 113
Query: 138 PVPWGTLPTILVIEFLSIAFVEHQRSME-KDPEKKK-----------------YPGGA-F 178
+ PT++VI+F + + E +R + K+P + YPGG F
Sbjct: 114 NI---DFPTLIVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGLENGYPGGRFF 170
Query: 179 DPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 237
DP+G S+ D K+ EYK KE+KNGRLA++A +GF Q +A G GPL+NL+ HLADP H
Sbjct: 171 DPMGLSRGDAAKYAEYKQKEVKNGRLAMIACLGFAAQYAA-TGKGPLDNLSDHLADPNHI 229
Query: 238 NI 239
N
Sbjct: 230 NF 231
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 108/197 (54%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I ++ + + VE R
Sbjct: 122 GVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 180
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 181 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 236
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 237 GPLENLADHLADPVNNN 253
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 109/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ G+P P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 56 LSGDP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 114
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 115 RNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 173
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 174 GPLGEIVDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 229
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 230 GKGPLENLADHLADPVNNN 248
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 109/196 (55%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAML----AVV---SSKFFWIL 108
P YL G PGD+G+DP LG+ PE+ +Y+ ELIH RWAML AV+ +KF
Sbjct: 85 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 144
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + G Y G +P L ++ E + + E+ R D
Sbjct: 145 GPEAV----WFKTGAL-LLDGNTLNYFGNSIPI-NLVVAVIAEVILVGGAEYYRITNGLD 198
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG + DP + KVKEIKNGRLA+ + F + Q+ G GP+ENL
Sbjct: 199 LEDKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFSMFAFFI-QAYVTGEGPVENL 257
Query: 228 ATHLADPWHNNIGDVI 243
A HL+DP+ NN+ VI
Sbjct: 258 AKHLSDPFGNNLLTVI 273
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 110/217 (50%), Gaps = 33/217 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG PP+LDG+ PGDFGFDPL LG PE+L ++EL+HCRWAML I
Sbjct: 65 WFPGSTPPPWLDGTLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAG-----IF 119
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
+PE L + W + G+ Y T+ ++E I + E +R
Sbjct: 120 IPEFLTKIGVLNTPSWYSA--GELEYFTDTT------TLFIVELFFIGWAEGRRWADIIK 171
Query: 163 --SMEKDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFV 209
+ DP YPGG FDPLG+ + PQK ++ + KEIKNGRLA+LA +
Sbjct: 172 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPQKIKDLRTKEIKNGRLAMLAVM 231
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 246
G Q Y TGP++NL HLADP H I P+
Sbjct: 232 GAWFQH-IYTATGPIDNLFAHLADPGHATIFAAFTPK 267
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSFVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFV-QAIVT 235
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA H+ADP +NN
Sbjct: 236 GKGPLENLADHIADPINNN 254
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 109/196 (55%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL+G PGD+G+DP LG+ PE+ +Y+ ELIH RWAML +KF
Sbjct: 81 PAYLNGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 140
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + G Y G +P L ++ E + + E+ R + D
Sbjct: 141 GPEAV----WFKTGAL-LLDGNTLNYFGKNIPI-NLVVAVIAEVVLLGGAEYYRIINGLD 194
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG + DP + K KEIKNGRLA+ A +GF + Q+ G GP+ENL
Sbjct: 195 LEDKLHPGGPFDPLGLASDPDQAAILKAKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENL 253
Query: 228 ATHLADPWHNNIGDVI 243
+ HL+DP+ NN+ VI
Sbjct: 254 SKHLSDPFGNNLLTVI 269
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 65 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 123
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG P V ++ I + L + VE R
Sbjct: 124 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWATQVLLMGAVEGYRIAGGP 182
Query: 167 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 183 LGEVIDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 238
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 239 GPLENLADHLADPVNNN 255
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 116/210 (55%), Gaps = 33/210 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P +LDGS PGDFGFDPL LG PE L+ + ++EL+H RWAMLAV F IL
Sbjct: 59 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAV-----FGIL 113
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
VPE L +++ W G Y P T+ V++ + +VE +R
Sbjct: 114 VPELLERIGYIENFSWYD--AGTREYFVDPT------TLFVVQMGLMGWVEGRRWADIVN 165
Query: 163 --SMEKDPE---------KKKYPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFV 209
S++ +P+ YPGG FDP+ + + P+ + KEIKNGRLA+LAFV
Sbjct: 166 PGSVDIEPKVPHVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFV 225
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GF Q+ Y G GP+ENL HLADP H NI
Sbjct: 226 GFWF-QAIYTGEGPIENLMAHLADPGHCNI 254
>gi|302851787|ref|XP_002957416.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300257220|gb|EFJ41471.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 241
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 123/242 (50%), Gaps = 34/242 (14%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77
S++ ++ F A P + K A W PG P P +LDGS GD+GFDPL LG+
Sbjct: 4 SMIVQRRAAFGVARQTPRSVRV--KAATRPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQE 61
Query: 78 PENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGT 137
P+ L+ Y ++EL+H R+AML I LG W A G+
Sbjct: 62 PQTLKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGFPEWYDA--------GKVVVEKN 113
Query: 138 PVPWGTLPTILVIEFLSIAFVEHQRSME-KDPEKK-----------------KYPGGA-F 178
+ PT+L+ + + + E +R + K+P + YPGG F
Sbjct: 114 NI---DFPTLLITQLYLMGWAETKRWYDFKNPGSQGDGSFLGFTDEFKGLENGYPGGRFF 170
Query: 179 DPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 237
DP+G S+ D K++EYK KEIKNGRLA++A +GF Q +A G GPL+NLA HLADP H
Sbjct: 171 DPMGLSRGDADKYKEYKQKEIKNGRLAMIACLGFAAQYAA-TGKGPLDNLADHLADPNHV 229
Query: 238 NI 239
N
Sbjct: 230 NF 231
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFV-QAIVT 235
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA H+ADP +NN
Sbjct: 236 GKGPLENLADHIADPINNN 254
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 68 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRN 126
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 127 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWATQVILMGAVEGYRIAGGP 185
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 186 LGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 241
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 242 GPLENLADHLADPVNNN 258
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 65 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 123
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 124 GVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 182
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 183 LGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 238
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 239 GPLENLADHLADPVNNN 255
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR--- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 120 RNGVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG 178
Query: 163 ---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 179 GPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 234
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|449466336|ref|XP_004150882.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
gi|449522610|ref|XP_004168319.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
Length = 259
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 125/225 (55%), Gaps = 39/225 (17%)
Query: 37 ANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAM 96
A+A S++ + W+PG PP+LDG+ GDFGFDPL LGE P++L+ Y ++EL+HCR+AM
Sbjct: 43 AHAQSEHRQT--WLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAM 100
Query: 97 LAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWG--TLPTILVIEFLS 154
L V +L+ + L + + W Y V +G T+ +++ L
Sbjct: 101 LGVSG-----VLLTDLLRVTGISELPVW---------YNAGAVEYGFANKRTLFIVQLLL 146
Query: 155 IAFVEHQRSME-KDPEKKK------------------YPGG-AFDPLGFSKDPQKFEEYK 194
+ FVE +R M+ K P + YPGG +PLG +KD + ++K
Sbjct: 147 MGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWK 206
Query: 195 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+KEIKNGRLA++A +G V Q+ TGP++NL HL++PWH I
Sbjct: 207 LKEIKNGRLAMVAMLGIFV-QAYVTHTGPIDNLVEHLSNPWHKTI 250
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 116/210 (55%), Gaps = 33/210 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P +LDGS PGDFGFDPL LG PE L+ + ++EL+H RWAMLAV F IL
Sbjct: 59 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAV-----FGIL 113
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
VPE L +++ W G Y P T+ V++ + +VE +R
Sbjct: 114 VPELLEKIGYIENFSW--YDAGAREYFVDPT------TLFVVQMGLMGWVEGRRWADMVN 165
Query: 163 --SMEKDPE---------KKKYPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFV 209
S++ +P+ YPGG FDP+ + + P+ + KEIKNGRLA+LAFV
Sbjct: 166 PGSVDIEPKVPHITNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFV 225
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GF Q+ Y G GP+ENL HLADP H NI
Sbjct: 226 GFWF-QAIYTGEGPIENLMAHLADPGHCNI 254
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 121/241 (50%), Gaps = 42/241 (17%)
Query: 30 AVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERY 84
AVS P A S A++AD W PG P +LDGS PGDFGFDPL L P++L+
Sbjct: 35 AVSRPDA----SVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWN 90
Query: 85 KESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTL 144
++EL+HCRWAML I +PE L + W G+ Y
Sbjct: 91 VQAELVHCRWAMLGAAG-----IFIPEFLTKIGILNTPSWYTA--GEQEYFTDKT----- 138
Query: 145 PTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPLGF-SK 185
T+ V+E + I + E +R S+ DP YPGG FDPLG+ S
Sbjct: 139 -TLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSG 197
Query: 186 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 245
P K +E + KEIKNGRLA+LA +G Q Y GTGP++NL HLADP H I P
Sbjct: 198 SPAKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGHATIFAAFTP 256
Query: 246 R 246
+
Sbjct: 257 K 257
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ G+P P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 62 LSGDP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 235
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 236 GKGPLENLADHLADPVNNN 254
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 107/199 (53%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 57 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 115
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W A GG YLG P V ++ I + + + VE R
Sbjct: 116 RNGVKFGEAVWFMAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 174
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 175 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 230
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA H+ADP +NN
Sbjct: 231 GKGPLENLADHIADPVNNN 249
>gi|268612161|pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612179|pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612197|pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 129/252 (51%), Gaps = 44/252 (17%)
Query: 9 CGIATTAFPSVLSSSKSKFFTAVSL-PAAANATSKYAMSA---DWMPGEPRPPYLDGSAP 64
CG+ + L S K V+ P + ++ + + A +W+PG P YL GS P
Sbjct: 16 CGLKS----RFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLP 71
Query: 65 GDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEW 124
GD GFDPL L E PENL + ++EL++ RWAML V +L+PE + +W
Sbjct: 72 GDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAG-----MLLPEVFTSIGIINVPKW 126
Query: 125 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---- 172
A G+ Y + T+ VIEF+ +VE +R S+ +DP K+
Sbjct: 127 YAA--GKEEYFASS------STLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 178
Query: 173 -----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
YPGG F+PL F+ E K KEI NGRL +LAF+GF +Q + G GP +NL
Sbjct: 179 AGEVGYPGGIFNPLNFAPT----LEAKEKEIANGRL-MLAFLGFIIQHNV-TGKGPFDNL 232
Query: 228 ATHLADPWHNNI 239
H++DPWHN I
Sbjct: 233 LQHISDPWHNTI 244
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 109/196 (55%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAML----AVV---SSKFFWIL 108
P YL G PGD+G+DP LG+ PE+ +Y+ ELIH RWAML AV+ +KF
Sbjct: 85 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 144
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + G Y G +P L ++ E + + E+ R D
Sbjct: 145 GPEAV----WFKTGAL-LLDGNTLNYFGNSIPI-NLVVAVIAEVVLVGGAEYYRITNGLD 198
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG + DP + KVKEIKNGRLA+ + F + Q+ G GP+ENL
Sbjct: 199 LEDKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFSMFAFFI-QAYVTGEGPVENL 257
Query: 228 ATHLADPWHNNIGDVI 243
A HL+DP+ NN+ VI
Sbjct: 258 AKHLSDPFGNNLLTVI 273
>gi|413968458|gb|AFW90566.1| chlorophyll a/b-binding protein [Solanum tuberosum]
Length = 271
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 103/193 (53%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P Y G PGD+G+D L PE R +E E+IHCRWAML + F IL
Sbjct: 63 EQTPSYSTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P V ++ I + + + FVE R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPL 181
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 182 GEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 240
Query: 226 NLATHLADPWHNN 238
NL+ H+ DP NN
Sbjct: 241 NLSDHINDPVANN 253
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 109/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ G+P P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 62 LSGDP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 235
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 236 GKGPLENLADHLADPVNNN 254
>gi|326508082|dbj|BAJ86784.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526845|dbj|BAK00811.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 113/210 (53%), Gaps = 33/210 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG PP+LDGS PGDFGFDPL G PE+L + ++EL+H RWAMLAV IL
Sbjct: 71 WFPGTAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAVAG-----IL 125
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME--- 165
+PE L W +E++ G+ Y P T+ V + + +VE +R M+
Sbjct: 126 IPEI--LQKWGFMEEFSWYTAGEREYFADPW------TLFVTQMALMGWVEGRRWMDYLN 177
Query: 166 --------KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFV 209
+ P +K YPGG FD + + P+ + KEIKNGRLA+LAFV
Sbjct: 178 PGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNGRLAMLAFV 237
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GF Q Y G GPL+NL HLADP H NI
Sbjct: 238 GFWF-QVVYTGQGPLDNLFAHLADPGHCNI 266
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 105/195 (53%), Gaps = 11/195 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE R +E E+IH RWAML + F +L
Sbjct: 59 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 117
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 167
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 118 GVKFGEAVWFKAGSQIFSDGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNG 176
Query: 168 P----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
P E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP
Sbjct: 177 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGP 235
Query: 224 LENLATHLADPWHNN 238
+ENLA HLADP NN
Sbjct: 236 IENLADHLADPVTNN 250
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME-- 165
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVAGGP 180
Query: 166 ----KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 181 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 236
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 237 GPLENLADHLADPVNNN 253
>gi|18397286|ref|NP_564339.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|317374860|sp|P0CJ48.1|CB1A_ARATH RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=Chlorophyll a-b protein 165;
Short=CAB-165; AltName: Full=LHCII type I CAB-2; Flags:
Precursor
gi|317374942|sp|Q8VZ87.2|CB1B_ARATH RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=Chlorophyll a-b protein 180;
Short=CAB-180; AltName: Full=LHCII type I CAB-3; Flags:
Precursor
gi|9972354|gb|AAG10604.1|AC008030_4 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|9972355|gb|AAG10605.1|AC008030_5 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana]
gi|16372|emb|CAA27541.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15809862|gb|AAL06859.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21555860|gb|AAM63949.1| photosystem II type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I chlorophyll a/b binding protein, putative
[Arabidopsis thaliana]
gi|23397170|gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
gi|332193028|gb|AEE31149.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|332193029|gb|AEE31150.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
Length = 267
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 103/191 (53%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE R +E E+IH RWAML + F +L +
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP--- 168
G W +A GG YLG P V ++ I + + + VE R P
Sbjct: 127 GEAVWFKAGSQIFSDGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 185
Query: 169 -EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 186 AEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENL 244
Query: 228 ATHLADPWHNN 238
A HLADP +NN
Sbjct: 245 ADHLADPVNNN 255
>gi|326523021|dbj|BAJ88556.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 113/210 (53%), Gaps = 33/210 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG PP+LDGS PGDFGFDPL G PE+L + ++EL+H RWAMLAV IL
Sbjct: 68 WFPGTAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAVAG-----IL 122
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME--- 165
+PE L W +E++ G+ Y P T+ V + + +VE +R M+
Sbjct: 123 IPEI--LQKWGFMEEFSWYTAGEREYFADPW------TLFVTQMALMGWVEGRRWMDYLN 174
Query: 166 --------KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFV 209
+ P +K YPGG FD + + P+ + KEIKNGRLA+LAFV
Sbjct: 175 PGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNGRLAMLAFV 234
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GF Q Y G GPL+NL HLADP H NI
Sbjct: 235 GFWF-QVVYTGQGPLDNLFAHLADPGHCNI 263
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 102/193 (52%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IHCRWAML + F IL
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P V ++ I + + + FVE R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPL 181
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ YPGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 182 GEGLDAIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 240
Query: 226 NLATHLADPWHNN 238
NL HLADP NN
Sbjct: 241 NLVDHLADPVANN 253
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 105/195 (53%), Gaps = 11/195 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE R +E E+IH RWAML + F +L
Sbjct: 59 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 117
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 167
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 118 GVKFGEAVWFKAGSQIFSDGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNG 176
Query: 168 P----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
P E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP
Sbjct: 177 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGP 235
Query: 224 LENLATHLADPWHNN 238
+ENLA HLADP NN
Sbjct: 236 IENLADHLADPVTNN 250
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 105/193 (54%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 185
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 186 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 241
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 242 NLADHLADPVNNN 254
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 65 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 123
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 124 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 182
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 183 LGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 238
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 239 GPLENLADHLADPVNNN 255
>gi|15220615|ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
gi|115783|sp|P04778.1|CB1C_ARATH RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=Chlorophyll a-b protein 140;
Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
Precursor
gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332193030|gb|AEE31151.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
Length = 267
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 103/191 (53%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE R +E E+IH RWAML + F +L +
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP--- 168
G W +A GG YLG P V ++ I + + + VE R P
Sbjct: 127 GEAVWFKAGSQIFSDGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 185
Query: 169 -EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 186 AEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENL 244
Query: 228 ATHLADPWHNN 238
A HLADP +NN
Sbjct: 245 ADHLADPVNNN 255
>gi|357137970|ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 259
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 115/213 (53%), Gaps = 33/213 (15%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFW 106
A W+PG PPYLDG+ PGD+GFDPL LGE P +L+ Y ++EL+HCR+AM V
Sbjct: 53 ATWLPGLDPPPYLDGTLPGDYGFDPLGLGEEPADLKWYVQAELVHCRFAMAGVAG----- 107
Query: 107 ILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME- 165
IL + + + W + + T + ++ L + FVE +R M+
Sbjct: 108 ILGTDLIRVSGISNLPVWFEAGATKFDFANT-------TALFFVQLLLMGFVETKRYMDI 160
Query: 166 KDPEKKK------------------YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALL 206
+P + YPGG F+P+G +KD + E K+KEIKNGRLA++
Sbjct: 161 VNPGSQAEEGTFLGIEASLEGLQPGYPGGPLFNPMGLAKDIKNAHEVKLKEIKNGRLAMV 220
Query: 207 AFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
A +GF VQ S GP++NL HL+DP++NNI
Sbjct: 221 AMLGFFVQASVT-HVGPIDNLLIHLSDPFNNNI 252
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 178
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 179 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 234
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HL+DP +NN
Sbjct: 235 GKGPLENLADHLSDPVNNN 253
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 179
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 235
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HL+DP +NN
Sbjct: 236 GKGPLENLADHLSDPVNNN 254
>gi|307109464|gb|EFN57702.1| hypothetical protein CHLNCDRAFT_59626 [Chlorella variabilis]
Length = 249
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 120/233 (51%), Gaps = 32/233 (13%)
Query: 29 TAVSLPAAANATSKYAMSAD-WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
T+ + A +A YA S W PG P +LDG+ PGDFGFDPL LG E L+ Y+ +
Sbjct: 15 TSSRVQARRSAVVVYAASRPLWQPGVTPPAHLDGTLPGDFGFDPLNLGVNKEALDWYRNA 74
Query: 88 ELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTI 147
EL + RWAML V I+ P L + +WA G +P+ +L
Sbjct: 75 ELQNGRWAMLGVAG-----IIFPAELTRVGLLNVPDWADA-GKVYAESENAIPFASL--- 125
Query: 148 LVIEFLSIAFVEHQR--------------------SMEKDPEKKKYPGGAFDPLGF-SKD 186
L+++F FVE +R S K YPGG F+PLG +
Sbjct: 126 LMVQFFLFNFVEIKRWEDIKKPGSQAEAGSFLGFESAFKGSGVSGYPGGPFNPLGLGNSS 185
Query: 187 PQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+ +++K +EI+NGRLA++AF+GF Q +A G GPL+NLA HLADPW NN
Sbjct: 186 KESMDDFKWREIRNGRLAMMAFLGFLAQHAA-TGKGPLDNLADHLADPWANNF 237
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVAGGP 180
Query: 167 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 181 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 236
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 237 GPLENLADHLADPVNNN 253
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 105/193 (54%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 186
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLVHAQSILAIWASQVVLMGAVEGYRIAGGP 179
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 180 LGEVTDP---LYPGGSFDPLGLADDPEAFSELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 235
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 236 GPLENLADHLADPVNNN 252
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 101/271 (37%), Positives = 135/271 (49%), Gaps = 39/271 (14%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANA-TSKYAMSAD-----WMPGEP 54
MAS+ S IA + PS L K + +++PA + S A++AD W PG
Sbjct: 1 MASSLCASSAIAAISSPSFLGGKKLRLKKKLTVPAVSRQDASVRAVAADPDRPIWFPGST 60
Query: 55 RPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALG 114
P +LDGS PGDFGFDPL L P++L+ ++E++HCRWAML I +PE L
Sbjct: 61 PPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAG-----IFIPEFLT 115
Query: 115 LGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEK 166
+ W G+ Y T+ V+E + I + E +R S+
Sbjct: 116 KIGILNTPSWYTA--GEQEYFTDKT------TLFVVELILIGWAEGRRWADIIKPGSVNT 167
Query: 167 DP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQ 215
DP YPGG FDPLG+ S P K +E + KEIKNGRLA+LA +G Q
Sbjct: 168 DPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQH 227
Query: 216 SAYPGTGPLENLATHLADPWHNNIGDVIIPR 246
Y GTGP++NL HLADP H I P+
Sbjct: 228 -IYTGTGPIDNLFAHLADPGHATIFAAFTPK 257
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 105/193 (54%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 186
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 105/193 (54%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 184
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 115/208 (55%), Gaps = 31/208 (14%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG+ P +LDGS P D+GFDPL LG P+ L +++EL+HCRWAM+ V IL
Sbjct: 2 WFPGDTPPAHLDGSLPADYGFDPLSLGSDPDMLAWMRQAELMHCRWAMMGVAG-----IL 56
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME--- 165
VP L + W G+ + VP+ L L++EFL++ FVE +R +
Sbjct: 57 VPALLTKLGAMNVPVW--FEAGKVANDNSSVPFSAL---LMVEFLAMGFVETKRWYDIKS 111
Query: 166 ------------KDPEKKK---YPGGA-FDPLGFSKDPQK-FEEYKVKEIKNGRLALLAF 208
D K K YPGG FDP GFSK ++ ++ +VKEI NGRLA++A
Sbjct: 112 PGSQGDGSIFGITDDFKGKSVGYPGGTFFDPFGFSKGSEESYKTLQVKEIANGRLAMVAM 171
Query: 209 VGFCVQQSAYPGTGPLENLATHLADPWH 236
VGF Q +A G GP++NL H+ADP H
Sbjct: 172 VGFWAQYAA-TGKGPVDNLFDHIADPGH 198
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 105/193 (54%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 186
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 121/241 (50%), Gaps = 42/241 (17%)
Query: 30 AVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERY 84
AVS P A S A++AD W PG P +LDGS PGDFGFDPL L P++L+
Sbjct: 35 AVSRPDA----SVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWN 90
Query: 85 KESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTL 144
++E++HCRWAML I +PE L + W G+ Y
Sbjct: 91 VQAEIVHCRWAMLGAAG-----IFIPEFLTKIGILNTPSWYTA--GEQEYFTDKT----- 138
Query: 145 PTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPLGF-SK 185
T+ V+E + I + E +R S+ DP YPGG FDPLG+ S
Sbjct: 139 -TLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSG 197
Query: 186 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 245
P K +E + KEIKNGRLA+LA +G Q Y GTGP++NL HLADP H I P
Sbjct: 198 SPAKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGHATIFAAFTP 256
Query: 246 R 246
+
Sbjct: 257 K 257
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + S F +L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGSIFPELLA 120
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 179
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 235
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA H+ DP +NN
Sbjct: 236 GKGPLENLADHIVDPVNNN 254
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 105/193 (54%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 186
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 60 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR--- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 119 RNGVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG 177
Query: 163 ---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 178 GPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 233
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 234 GKGPLENLADHLADPVNNN 252
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWASQVVLMGAVEGYRVAGGP 180
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 181 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 236
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 237 GPLENLADHLADPVNNN 253
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 60 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 119 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 177
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 178 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 233
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HL+DP +NN
Sbjct: 234 GKGPLENLADHLSDPVNNN 252
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 107/194 (55%), Gaps = 10/194 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE +RY+E ELIH RWAML + F +L
Sbjct: 55 GEP-PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSY 113
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG P V ++ IL + L + +E R
Sbjct: 114 GVPFGEAVWFKAGAQIFQEGG-LDYLGNPNLVHAQSILAILGTQVLLMGAIEGYRVNGGP 172
Query: 167 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
+ K YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPL
Sbjct: 173 LGEGLDKLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPL 231
Query: 225 ENLATHLADPWHNN 238
+NL+ HLA+P NN
Sbjct: 232 QNLSDHLANPGTNN 245
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 124/248 (50%), Gaps = 40/248 (16%)
Query: 24 KSKFFTAVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVP 78
K K ++ + P+ +TS A+ W PG PP+LDGS PGDFGFDPL LG P
Sbjct: 37 KLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDP 96
Query: 79 ENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTP 138
E+L ++EL+H RWAML I +PE L + W G Q + T
Sbjct: 97 ESLRWNVQAELVHSRWAMLGAAG-----IFIPEFLTKLGILNTPSWYTA-GEQEYFTDT- 149
Query: 139 VPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDP 180
T+ ++E + I + E +R + DP YPGG FDP
Sbjct: 150 ------TTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDP 203
Query: 181 LGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL-ATHLADPWHNN 238
LG+ S PQK +E + KEIKNGRLA+LA +G Q Y GTGP++NL A HLADP H
Sbjct: 204 LGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAAHLADP-HAT 261
Query: 239 IGDVIIPR 246
I P+
Sbjct: 262 IFAAFTPK 269
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 105/193 (54%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 184
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 68 PSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 186
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 106/194 (54%), Gaps = 10/194 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWACQVILMGAVEGYRVAGGP 179
Query: 167 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
+ YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPL
Sbjct: 180 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPL 238
Query: 225 ENLATHLADPWHNN 238
ENLA HLADP +NN
Sbjct: 239 ENLADHLADPVNNN 252
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 105/193 (54%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFTKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 165
G W +A GG YLG P V ++ I + + + +E R
Sbjct: 128 GEAVWFKAGAQIFSEGGL-DYLGNPSLVHAQSILAIWACQVILMGAIEGYRVAGGPLGEV 186
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 TDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group]
gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica
Group]
gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group]
Length = 321
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 112/205 (54%), Gaps = 27/205 (13%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P +L G PGD+GFD LG P Y E++HCRWAMLA + ++VPE L L
Sbjct: 118 PAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALG-----VVVPELLDL 172
Query: 116 GNWVQAQE-------WAAVPGGQATYLGTP---VPWGT-LPTILVIEFLSIAFVEHQRSM 164
V E +A + G YLG P + G + I + + L + E+ R
Sbjct: 173 FGVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQALLMVGPEYARYC 232
Query: 165 EKD---------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
+ P YPGGA FDPLG SKDP FE+ KVKEIKNGRLA++A++GF +
Sbjct: 233 GIEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYI- 291
Query: 215 QSAYPGTGPLENLATHLADPWHNNI 239
Q+A G GP++NL HL+DP HNNI
Sbjct: 292 QAAVTGKGPIQNLVEHLSDPLHNNI 316
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group]
Length = 321
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 112/205 (54%), Gaps = 27/205 (13%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P +L G PGD+GFD LG P Y E++HCRWAMLA + ++VPE L L
Sbjct: 118 PAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALG-----VVVPELLDL 172
Query: 116 GNWVQAQE-------WAAVPGGQATYLGTP---VPWGT-LPTILVIEFLSIAFVEHQRSM 164
V E +A + G YLG P + G + I + + L + E+ R
Sbjct: 173 FEVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQALLMVGPEYARYC 232
Query: 165 EKD---------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
+ P YPGGA FDPLG SKDP FE+ KVKEIKNGRLA++A++GF +
Sbjct: 233 GIEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYI- 291
Query: 215 QSAYPGTGPLENLATHLADPWHNNI 239
Q+A G GP++NL HL+DP HNNI
Sbjct: 292 QAAVTGKGPIQNLVEHLSDPLHNNI 316
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 105/193 (54%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 185
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 186 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 241
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 242 NLADHLADPVNNN 254
>gi|169743370|gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 111/202 (54%), Gaps = 16/202 (7%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------S 102
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML V +
Sbjct: 58 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGVAGFIIPEACN 116
Query: 103 KFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR 162
KF PEA+ W + + G Y G +P L ++ E + + E+ R
Sbjct: 117 KFGANCGPEAV----WFKTGALL-LDGNTLNYFGNSIPI-NLILAVIAEVVLVGGAEYYR 170
Query: 163 SMEK-DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
+ D E K +PGG FDPLG + DP + KVKEIKNGRLA+ + +GF + Q+ G
Sbjct: 171 IINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFI-QAYVTGE 229
Query: 222 GPLENLATHLADPWHNNIGDVI 243
GP+ENLA HL+DP+ NN+ VI
Sbjct: 230 GPVENLAKHLSDPFGNNLLTVI 251
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 109/222 (49%), Gaps = 26/222 (11%)
Query: 38 NATSKYAMSAD----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCR 93
N + +A S + W PG P +L G PGD GFDPL L + PE+ + ++SE+ H R
Sbjct: 348 NTVAMFAASGEKRPTWFPGAEAPAWLTGEYPGDRGFDPLGLAKDPEDFAKNRDSEVYHGR 407
Query: 94 WAMLAVVSSKFFWILVPEALGLGNWVQAQEW----AAVPGGQATYLGTP--VPWGTLPTI 147
WAML +V LVPE G Q W A G YLG P V +P I
Sbjct: 408 WAMLGLVG-----CLVPEVFGNLGIAQLPAWYEAGAVANTGSLDYLGNPNLVHASNVPLI 462
Query: 148 LVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNG 201
L +E R K E+ YPGG FDPL P E K+KEIKNG
Sbjct: 463 FFTTLLLFLPIEAWRWNGQIAPEAKSAERTTYPGGPFDPLKLGASP----ELKLKEIKNG 518
Query: 202 RLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
RLA++ GF QS G GPL NLA HLADP HNN+ + +
Sbjct: 519 RLAMVGMFGFWA-QSYVTGEGPLANLAAHLADPAHNNLLNTV 559
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 111/222 (50%), Gaps = 26/222 (11%)
Query: 38 NATSKYAMSAD----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCR 93
N + +A S + W PG P +L G PGD GFDP L + P + ++++SE+ H R
Sbjct: 139 NTVAMFAASGEKRPTWFPGAEAPTWLTGEYPGDRGFDPFGLAKDPADFAKFRDSEVFHGR 198
Query: 94 WAMLAVVSSKFFWILVPEALGLGNWVQAQEW--AAVPGGQAT--YLGTP--VPWGTLPTI 147
WAML +V LVPE G Q W AA + YLG P V + I
Sbjct: 199 WAMLGLVG-----CLVPEVFGNLGIAQLPAWYDAATVANTSNLDYLGNPNLVHASNVSFI 253
Query: 148 LVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNG 201
+ L + VE R S K E+ YPGG FDPL P E K+KEIKNG
Sbjct: 254 ALSTLLLMGPVEAWRWNGALASEAKSAERTTYPGGPFDPLKLGASP----ELKLKEIKNG 309
Query: 202 RLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
RLA++ GF QS G GPL NLA HLADP HNN+ + +
Sbjct: 310 RLAMVGMFGFWA-QSYVTGEGPLANLAAHLADPAHNNLLNTV 350
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 110 PEALGLGNWVQAQEW----AAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR- 162
PE G Q W A G YLG P V +P I L +E R
Sbjct: 1 PEVFGNLGIAQLPAWYEAGAVANTGSLDYLGNPNLVHASNVPLIFFTTLLLFLPIEAWRW 60
Query: 163 --SMEKDPEKKK---YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSA 217
+ D + K+ YPGG FDPL P E K+KEIKNGRLA++ GF Q S
Sbjct: 61 NGQIAPDAKSKEWTTYPGGPFDPLKLGASP----ELKLKEIKNGRLAMVGMFGFWAQ-SY 115
Query: 218 YPGTGPLENLATHLADPWHNNIGDVI 243
G GPL NLA HLADP HNN+ + +
Sbjct: 116 VTGEGPLANLAAHLADPAHNNLLNTV 141
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 63/160 (39%), Gaps = 42/160 (26%)
Query: 69 FDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVP 128
FDPL+LG PE K E+ + R AM+ + G W Q+ P
Sbjct: 81 FDPLKLGASPE----LKLKEIKNGRLAMVGM---------------FGFWAQSYVTGEGP 121
Query: 129 -GGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPE-----------KKKYPGG 176
A +L P L T+ + S EK P +YPG
Sbjct: 122 LANLAAHLADPAHNNLLNTVAMF----------AASGEKRPTWFPGAEAPTWLTGEYPGD 171
Query: 177 -AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQ 215
FDP G +KDP F +++ E+ +GR A+L VG V +
Sbjct: 172 RGFDPFGLAKDPADFAKFRDSEVFHGRWAMLGLVGCLVPE 211
>gi|255538312|ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 269
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 118/212 (55%), Gaps = 35/212 (16%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W+PG PPYLDG+ GD+GFDPL LGE PE+L+ Y ++EL+H R+AML + F +L
Sbjct: 63 WLPGLDSPPYLDGTLAGDYGFDPLGLGEDPESLKWYVQAELVHARFAMLGIAGILFTDLL 122
Query: 109 -VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-- 165
V L W +A G Y + + T+LV++ L + + E +R M+
Sbjct: 123 RVTGIRKLPVWYEA--------GAVKY-----EFASTRTLLVVQLLWMGYAETRRYMDYV 169
Query: 166 ----KDPE-------------KKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLA 207
++ E + YPGG +P G +KD + ++K+KEIKNGRLA++A
Sbjct: 170 SPGSQNKEGSFFGMEAALEGLEPGYPGGPLLNPFGLAKDIRSARDWKLKEIKNGRLAMVA 229
Query: 208 FVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+G V Q+A TGP++NL HL+DPWH I
Sbjct: 230 MLGIFV-QAAVTHTGPIDNLLEHLSDPWHKTI 260
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEV 186
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 103/191 (53%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE R +E E+IH RWAML + F +L +
Sbjct: 49 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 108
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP--- 168
G W +A GG YLG P V ++ I + + + VE R P
Sbjct: 109 GEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 167
Query: 169 -EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 168 AEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENL 226
Query: 228 ATHLADPWHNN 238
A HLADP +NN
Sbjct: 227 ADHLADPVNNN 237
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 65 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 123
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 124 GVKFGEAVWFKAGAQIFSEGGL-DYLGNPNLVHAQSILAIWASQVILMGAVEGYRIGGGP 182
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 183 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 238
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 239 GPLENLADHLADPVNNN 255
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 64 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 122
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVAGGP 181
Query: 167 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 182 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 237
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 238 GPLENLADHLADPVNNN 254
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 105/193 (54%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 126 GEAVWFKAGSQIFSQGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 184
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 105/193 (54%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 126 GEVVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 184
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 105/193 (54%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 165
G W +A GG YLG P V ++ I + + + +E R
Sbjct: 128 GEAVWFKAGAQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEV 186
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 TDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 105/193 (54%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 184
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 186
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 108/195 (55%), Gaps = 12/195 (6%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 36 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRN 94
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 167
+ G W +A GG YLG P V ++ I + + + VE R +
Sbjct: 95 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYR-VAGG 152
Query: 168 PEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
P K YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP
Sbjct: 153 PLGKVTGPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGP 211
Query: 224 LENLATHLADPWHNN 238
LENLA HLADP +NN
Sbjct: 212 LENLADHLADPVNNN 226
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 105/193 (54%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 184
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 105/193 (54%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W + GG YLG P V ++ I + + + VE R +
Sbjct: 128 GEAVWFKGGSQIFSQGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEV 186
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|357153802|ref|XP_003576571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 113/210 (53%), Gaps = 33/210 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG PP+LDGS PGDFGFDPL LG PE L + ++EL+H RWAMLAV IL
Sbjct: 70 WFPGTSPPPWLDGSLPGDFGFDPLGLGSEPETLRWFAQAELMHSRWAMLAVAG-----IL 124
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME--- 165
+PE L W +E++ G+ Y P T+ + + + + E +R M+
Sbjct: 125 IPEI--LQKWGFMEEFSWYTAGEREYFADPW------TLFIAQMALMGWAEGRRWMDYLN 176
Query: 166 --------KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFV 209
+ P +K YPGG FD + + P+ + KEIKNGRLA+LAFV
Sbjct: 177 PGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNGRLAMLAFV 236
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GF Q+ Y G GP++NL HLADP H NI
Sbjct: 237 GFWF-QAVYTGQGPVDNLLAHLADPGHCNI 265
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWGCQVVLMGAVEGYRVAG 178
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 234
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 107/199 (53%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 179
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 235
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA H+ DP +NN
Sbjct: 236 GKGPLENLADHITDPVNNN 254
>gi|116783401|gb|ABK22927.1| unknown [Picea sitchensis]
Length = 126
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/101 (65%), Positives = 76/101 (75%), Gaps = 1/101 (0%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAV-SLPAAANATSKYAMSADWMPGEPRPPYL 59
MA+ S +A F SS+KS+FF+ SL S+ +MSA+WMPG+PRPP+L
Sbjct: 1 MATAVGCSHVVAPVVFAGAFSSAKSRFFSPTNSLSLGVCNGSRVSMSAEWMPGQPRPPHL 60
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVV 100
DGSAPGDFGFDPLRLG VPENLERYKESELIHCRWAMLAVV
Sbjct: 61 DGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVV 101
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 105/193 (54%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + +E R
Sbjct: 128 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAIEGYRVAGGPLGEV 186
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 IDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P + ++ I ++ + + VE R
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 178
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 234
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEV 186
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 186
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|118489878|gb|ABK96737.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 275
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 117/224 (52%), Gaps = 52/224 (23%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P +LDG+ GD GFDP LG+ E
Sbjct: 58 WFPGASPPEWLDGTMVGDRGFDPFALGKPAEYLQFDLDSLDQNLAKNLAGDVIGVRVDAT 117
Query: 80 --------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
L+R++E ELIH RWAML + + + EAL W A +
Sbjct: 118 EVKPTPFQPYSEVFGLQRFRECELIHGRWAMLGTLGA-----IAVEALTGVAWQDAGKVE 172
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSK 185
+ G ++YLG P+P+ +L T++ IE + I ++E QR+ E DPEK+ YPGG FDPLG +
Sbjct: 173 LIEG--SSYLGQPLPF-SLTTLIWIEVIVIGYIEFQRNAELDPEKRLYPGGYFDPLGLAS 229
Query: 186 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 229
DP+K E ++ EIK+ RLA++AF+ F + Q+A+ G GP+ +AT
Sbjct: 230 DPEKIENLQLAEIKHARLAMVAFLIFGI-QAAFTGKGPISFVAT 272
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ G+P P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 62 LSGDP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 235
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HL+DP +NN
Sbjct: 236 GKGPLENLADHLSDPVNNN 254
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEV 186
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 184
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCDFPELLARNGVKF 125
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 126 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 184
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSTFGFFV-QAIVTGKGPLE 240
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ G+P P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 83 LSGDP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 141
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 142 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 200
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 201 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 256
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HL+DP +NN
Sbjct: 257 GKGPLENLADHLSDPVNNN 275
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 184
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 IDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|326489913|dbj|BAJ94030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 112/210 (53%), Gaps = 33/210 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG PP+LDGS PGDFGFDPL G PE+L + ++EL+H RWAMLAV IL
Sbjct: 71 WFPGTAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAVAG-----IL 125
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME--- 165
+PE L W +E++ G+ Y P T+ V + + +VE +R M+
Sbjct: 126 IPEI--LQKWGFMEEFSWYTAGEREYFADPW------TLFVTQMALMGWVEGRRWMDYLN 177
Query: 166 --------KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFV 209
+ P +K YPGG FD + + P+ + KEIKNGRLA+LAFV
Sbjct: 178 PGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNGRLAMLAFV 237
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GF Q Y G GPL NL HLADP H NI
Sbjct: 238 GFWF-QVVYTGQGPLGNLFAHLADPGHCNI 266
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 110/205 (53%), Gaps = 27/205 (13%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+GFD L E P +RY E++H RWAMLA + + L+PE L L
Sbjct: 133 PTYLSGELPGDYGFDVAGLAEDPVAFQRYFNFEILHARWAMLAALGA-----LIPEVLDL 187
Query: 116 GNWVQAQE-------WAAVPGGQATYLGTP-VPWGTLPTILVIEFLSIAFV---EHQRSM 164
E ++ + G YLG P + + +LVI F + E+ R
Sbjct: 188 SGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGGQGVLVIAFCQAILMVGPEYARYC 247
Query: 165 EKD---------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
+ P YPGG FDPL SKDP FEE KVKEIKNGRLA++A++GF +
Sbjct: 248 GIEALEPLGIYLPGDINYPGGILFDPLNLSKDPVSFEELKVKEIKNGRLAMVAWLGFYI- 306
Query: 215 QSAYPGTGPLENLATHLADPWHNNI 239
Q+A G GP+ENL H++DP HNN+
Sbjct: 307 QAALTGKGPVENLVEHISDPLHNNL 331
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 126 GEAVWFKAGSQIFSDGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 184
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 103/191 (53%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE R +E E+IH RWAML + F +L +
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 92
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP--- 168
G W +A GG YLG P V ++ I + + + VE R P
Sbjct: 93 GEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 151
Query: 169 -EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 152 AEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENL 210
Query: 228 ATHLADPWHNN 238
A HLADP +NN
Sbjct: 211 ADHLADPVNNN 221
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 104/196 (53%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IHCRWAML + F IL
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILAKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPL 181
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---IYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 223 PLENLATHLADPWHNN 238
P+ENL H+ADP NN
Sbjct: 238 PIENLFDHVADPVANN 253
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ G+P P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 60 LSGDP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLS 118
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR--- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 119 RNGVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG 177
Query: 163 ---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 178 GPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 233
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 234 GKGPLENLADHLADPVNNN 252
>gi|115782|sp|P04784.1|CB21_WHEAT RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|170674|gb|AAA34260.1| chlorophyll a/b-binding protein precursor [Triticum aestivum]
Length = 266
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 110 PEALGLG--NWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V +L I + + + VE R
Sbjct: 121 RNGVKFGEAGWFKAGSQIFSDGG-LDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAG 179
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG ++ PQ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 235
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLE+LA H+ADP +NN
Sbjct: 236 GKGPLEDLADHIADPVNNN 254
>gi|297823921|ref|XP_002879843.1| LHCB4.3 [Arabidopsis lyrata subsp. lyrata]
gi|297325682|gb|EFH56102.1| LHCB4.3 [Arabidopsis lyrata subsp. lyrata]
Length = 276
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 117/224 (52%), Gaps = 52/224 (23%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W PG P +LDGS GD GFDP LG+ E L+
Sbjct: 59 WFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQDSS 118
Query: 83 -----------------RYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
R++E ELIH RWAML + + + EAL W A +
Sbjct: 119 EIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGA-----IAVEALTGIAWQDAGKVE 173
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSK 185
V G ++YLG P+P+ +L T++ IE L + ++E QR+ E DPEK+ YPGG FDPLG +
Sbjct: 174 LVEG--SSYLGQPLPF-SLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAA 230
Query: 186 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 229
DP+K + K+ EIK+ RLA++AF+ F + Q+A+ G GP+ LAT
Sbjct: 231 DPEKLDTLKLAEIKHSRLAMVAFLIFAL-QAAFTGKGPISFLAT 273
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 105/193 (54%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKF 125
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 184
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|159480898|ref|XP_001698519.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158282259|gb|EDP08012.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 262
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 118/211 (55%), Gaps = 35/211 (16%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
WMPG P YL+G+ PGDFGFDPL LG+ P L+ Y ++EL++ R+AMLAV IL
Sbjct: 61 WMPGADLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAG-----IL 115
Query: 109 VPEAL-GLG-NWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR---- 162
VPE L +G +W A A G+ Y ++ ++ L A+VE +R
Sbjct: 116 VPELLSNIGFSWPGAGV-AWYDAGKFEYFAPA------SSLFGVQMLLFAWVEIRRYQDF 168
Query: 163 ----SMEKDP----------EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAF 208
S +DP + YPGG FDP G+SK K K+KEIKNGRLA+LAF
Sbjct: 169 VKPGSANQDPIFTNNKLPDGNEPGYPGGIFDPFGWSKGDIK--SLKLKEIKNGRLAMLAF 226
Query: 209 VGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GF + Q+ GT PL+NL+THLADPW +
Sbjct: 227 AGF-IGQAYTTGTTPLKNLSTHLADPWSTTV 256
>gi|297809249|ref|XP_002872508.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
gi|297318345|gb|EFH48767.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 107/195 (54%), Gaps = 13/195 (6%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL+G GD+G+DP LG+ PEN +Y+ ELIH RWAML ++PEAL
Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAG-----FIIPEALNK 136
Query: 116 --GNWVQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDP 168
N W + G Y G +P + ++ L ++ + D
Sbjct: 137 YGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDF 196
Query: 169 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
E K +PGG FDPLG +KDP++ KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA
Sbjct: 197 EDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFI-QAYVTGEGPVENLA 255
Query: 229 THLADPWHNNIGDVI 243
HL+DP+ NN+ VI
Sbjct: 256 KHLSDPFGNNLLTVI 270
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 105/191 (54%), Gaps = 11/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 171
G W +A GG YLG P V ++ I + + + VE R + P +
Sbjct: 126 GEAVWFKAGSQIFREGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYR-IAGGPLGE 183
Query: 172 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLENL
Sbjct: 184 VVNPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENL 242
Query: 228 ATHLADPWHNN 238
A HLADP +NN
Sbjct: 243 ADHLADPVNNN 253
>gi|357465507|ref|XP_003603038.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355492086|gb|AES73289.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 116/215 (53%), Gaps = 33/215 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W+PG P YLDG+ PGDFGFDPL LGE PE+L+ Y ++EL+H R+AML V+ IL
Sbjct: 61 WLPGLDPPTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLG-----IL 115
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-KD 167
V + L + W G Y + T++V++ L + + E +R M+
Sbjct: 116 VTDLLRVAGVNSIPIW--FEAGAVKY-----EFANTGTLVVVQLLLMGYAETRRYMDFVS 168
Query: 168 PEKKK------------------YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAF 208
P + YPGG +PLG +KD + E+K+KEIKNGRLA++A
Sbjct: 169 PGSQAKEGSFFGLEASLGGLEPGYPGGPLLNPLGLAKDIKSAREWKLKEIKNGRLAMVAI 228
Query: 209 VGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
+G VQ S GP++NL HL++PWH I ++
Sbjct: 229 LGIFVQASVTH-VGPIDNLVEHLSNPWHKTIIQIL 262
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 103/193 (53%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E E+IHCRWAML + F IL
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P + ++ + + + + +E R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPL 181
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 182 GEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 240
Query: 226 NLATHLADPWHNN 238
NL H+ADP NN
Sbjct: 241 NLFDHVADPVANN 253
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 107/199 (53%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQAVLMGAVEGYRIAG 179
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 235
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA H+ DP +NN
Sbjct: 236 GKGPLENLADHITDPVNNN 254
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ G+P P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 60 LSGDP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLS 118
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR--- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 119 RNGVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG 177
Query: 163 ---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 178 GPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 233
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 234 GKGPLENLADHLADPVNNN 252
>gi|40714509|dbj|BAD06918.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 264
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 118/211 (55%), Gaps = 35/211 (16%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
WMPG P YL+G+ PGDFGFDPL LG+ P L+ Y ++EL++ R+AMLAV IL
Sbjct: 61 WMPGADLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAG-----IL 115
Query: 109 VPEAL-GLG-NWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR---- 162
VPE L +G +W A A G+ Y ++ ++ L A+VE +R
Sbjct: 116 VPELLSNIGFSWPGAGV-AWYDAGKFEYFAPA------SSLFGVQMLLFAWVEIRRYQDF 168
Query: 163 ----SMEKDP----------EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAF 208
S +DP + YPGG FDP G+SK K K+KEIKNGRLA+LAF
Sbjct: 169 VKPGSANQDPIFTNNKLPDGNEPGYPGGIFDPFGWSKGDIK--SLKLKEIKNGRLAMLAF 226
Query: 209 VGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GF + Q+ GT PL+NL+THLADPW +
Sbjct: 227 AGF-IGQAYTTGTTPLKNLSTHLADPWSTTV 256
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ G+P P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 60 LSGDP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLS 118
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR--- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 119 RNGVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG 177
Query: 163 ---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 178 GPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 233
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 234 GKGPLENLADHLADPVNNN 252
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 108/196 (55%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL+G PGD+G+DP L + PE+ +Y+ ELIH RWAML +KF
Sbjct: 90 PEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARWAMLGAAGFIIPEAFNKFGANC 149
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + G Y G +P L ++ E + + E+ R + +
Sbjct: 150 GPEAV----WFKTGAL-LLDGNTLNYFGNNIPI-NLIVAVIAEVVLVGGAEYYRIINGLN 203
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG + DP + KVKEIKNGRLA+ A +GF Q+ G GP+ENL
Sbjct: 204 FEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYF-QAYVTGEGPVENL 262
Query: 228 ATHLADPWHNNIGDVI 243
A HL+DP+ NN+ VI
Sbjct: 263 AKHLSDPFGNNLLTVI 278
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 107/195 (54%), Gaps = 12/195 (6%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 61 GEP-PSYLTGEFPGDYGWDAAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 119
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 167
+ G W +A GG YLG P + ++ I + + + VE R +
Sbjct: 120 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR-IAGG 177
Query: 168 PEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
P K YPGG+FDPLG + DP+ F E KVKEIKNGR A+ + GF V Q+ G GP
Sbjct: 178 PLGKVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRSAMFSMFGFFV-QAIVTGKGP 236
Query: 224 LENLATHLADPWHNN 238
LENLA HLADP +NN
Sbjct: 237 LENLADHLADPVNNN 251
>gi|307106432|gb|EFN54678.1| hypothetical protein CHLNCDRAFT_31627 [Chlorella variabilis]
Length = 246
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 116/212 (54%), Gaps = 27/212 (12%)
Query: 31 VSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPEN-LERYKESEL 89
V+ P A++ A W PG P +LDGS GD+GFDPLRLG ++ L+ Y+E EL
Sbjct: 17 VARPTRASSVVVAAARPTWYPGATPPKHLDGSMLGDYGFDPLRLGSKDKDVLKYYREGEL 76
Query: 90 IHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILV 149
+ RWAM AV IL + +GLG W W A ++++ L T+++
Sbjct: 77 TNGRWAMAAVAG-----ILFTDLVGLGPW-----WEAGAKVESSF--------DLKTLII 118
Query: 150 IEFLSIAFVE--HQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLA 207
+E ++ A +E ++ EK E P FDPL D E ++KE+KNGRLA+LA
Sbjct: 119 VEIVTFAILEGFRAKAYEKTGETGLGPFAPFDPLNMRSD-----ETRLKELKNGRLAMLA 173
Query: 208 FVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+GF Q+A G GP+E L HLADP HNNI
Sbjct: 174 ILGFS-SQAAVQGKGPIECLQAHLADPGHNNI 204
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 103/188 (54%), Gaps = 8/188 (4%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L P + Y+E+E+IH RWAML + F +L L
Sbjct: 106 PAYLTGEFPGDYGWDSAGLSADPLTFKGYRETEVIHARWAMLGALGCIFPELLNSAGFNL 165
Query: 116 GNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DPEK 170
W +A + YLG P V + +L ++ + + E R +P
Sbjct: 166 PVWFKAG--GTIFENGIDYLGNPNLVHAQSALAVLSVQVVLMGASEAYRFNGGPLGEPAD 223
Query: 171 KKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATH 230
YPGGAFDPLGF+KDP K E KVKEIKNGRLA+ A +G+ VQ A G GP+ENL+ H
Sbjct: 224 VLYPGGAFDPLGFAKDPSKAAELKVKEIKNGRLAMTAMLGYYVQALA-TGKGPIENLSEH 282
Query: 231 LADPWHNN 238
LADP NN
Sbjct: 283 LADPSKNN 290
>gi|224101127|ref|XP_002312153.1| light-harvesting complex II protein Lhcb8 [Populus trichocarpa]
gi|222851973|gb|EEE89520.1| light-harvesting complex II protein Lhcb8 [Populus trichocarpa]
Length = 275
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 117/224 (52%), Gaps = 52/224 (23%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P +LDG+ GD GFDP LG+ E
Sbjct: 58 WFPGASPPEWLDGTMVGDRGFDPFALGKPAEYLQFDLDSLDQNLAKNLAGDVIGVRVDAT 117
Query: 80 --------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
L+R++E ELIH RWAML + + + EAL W A +
Sbjct: 118 EVKPTPFQPYSEVFGLQRFRECELIHGRWAMLGTLGA-----IAVEALTGVAWQDAGKVE 172
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSK 185
+ G ++YLG P+P+ +L T++ IE + + ++E QR+ E DPEK+ YPGG FDPLG +
Sbjct: 173 LIEG--SSYLGQPLPF-SLTTLIWIEVIVVGYIEFQRNAELDPEKRLYPGGYFDPLGLAS 229
Query: 186 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 229
DP+K E ++ EIK+ RLA++AF+ F + Q+A+ G GP+ +AT
Sbjct: 230 DPEKIENLQLAEIKHARLAMVAFLIFGI-QAAFTGKGPISFVAT 272
>gi|21594018|gb|AAM65936.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
Length = 276
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 117/224 (52%), Gaps = 52/224 (23%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W PG P +LDGS GD GFDP LG+ E L+
Sbjct: 59 WFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDXXGLDQNLAKNVAGDIIGIIQESS 118
Query: 83 -----------------RYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
R++E ELIH RWAML + + + EAL W A +
Sbjct: 119 EIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGA-----IAVEALTGIAWQDAGKVE 173
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSK 185
V G ++YLG P+P+ +L T++ IE L + ++E QR+ E DPEK+ YPGG FDPLG +
Sbjct: 174 LVEG--SSYLGQPLPF-SLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAA 230
Query: 186 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 229
DP+K + K+ EIK+ RLA++AF+ F + Q+A+ G GP+ LAT
Sbjct: 231 DPEKLDTLKLAEIKHSRLAMVAFLIFAL-QAAFTGKGPVSFLAT 273
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic;
AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags:
Precursor
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 102/193 (52%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F IL +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKF 125
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 165
G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 126 GEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEG 184
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 185 LDP---IYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 240
Query: 226 NLATHLADPWHNN 238
NL HLADP NN
Sbjct: 241 NLFDHLADPVANN 253
>gi|15225630|ref|NP_181539.1| chlorophyll a-b binding protein CP29.3 [Arabidopsis thaliana]
gi|38503231|sp|Q9S7W1.1|CB4C_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.3,
chloroplastic; AltName: Full=LHCB4.3; AltName:
Full=LHCII protein 4.3; Flags: Precursor
gi|4741956|gb|AAD28775.1|AF134128_1 Lhcb4:3 protein [Arabidopsis thaliana]
gi|17979325|gb|AAL49888.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|20465761|gb|AAM20369.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330254684|gb|AEC09778.1| chlorophyll a-b binding protein CP29.3 [Arabidopsis thaliana]
Length = 276
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 117/224 (52%), Gaps = 52/224 (23%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W PG P +LDGS GD GFDP LG+ E L+
Sbjct: 59 WFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESS 118
Query: 83 -----------------RYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
R++E ELIH RWAML + + + EAL W A +
Sbjct: 119 EIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGA-----IAVEALTGIAWQDAGKVE 173
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSK 185
V G ++YLG P+P+ +L T++ IE L + ++E QR+ E DPEK+ YPGG FDPLG +
Sbjct: 174 LVEG--SSYLGQPLPF-SLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAA 230
Query: 186 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 229
DP+K + K+ EIK+ RLA++AF+ F + Q+A+ G GP+ LAT
Sbjct: 231 DPEKLDTLKLAEIKHSRLAMVAFLIFAL-QAAFTGKGPVSFLAT 273
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 107/199 (53%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ G P P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 60 LSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 119 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 177
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 178 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 233
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA H+ADP +NN
Sbjct: 234 GKGPLENLADHIADPVNNN 252
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 186
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
Length = 280
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 107/195 (54%), Gaps = 13/195 (6%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL+G GD+G+DP LG+ PEN +Y+ ELIH RWAML ++PEAL
Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAG-----FIIPEALNK 136
Query: 116 --GNWVQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDP 168
N W + G Y G +P + ++ L ++ + D
Sbjct: 137 YGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGSEYYRITNGLDF 196
Query: 169 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
E K +PGG FDPLG +KDP++ KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA
Sbjct: 197 EDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFI-QAYVTGEGPVENLA 255
Query: 229 THLADPWHNNIGDVI 243
HL+DP+ NN+ VI
Sbjct: 256 KHLSDPFGNNLLTVI 270
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 61 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRN 119
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 120 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPGLVHAQSILAIWACQVILMGAVEGYRIGGGP 178
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 179 LGEVIDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 234
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 235 GPLENLADHLADPVNNN 251
>gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding protein [Manihot esculenta]
Length = 243
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 104/196 (53%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 41 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEVLSKNG 100
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I ++ + + FVE R
Sbjct: 101 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPL 159
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 160 GEGLDP---IYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 215
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP NN
Sbjct: 216 PIENLFDHLADPVANN 231
>gi|15235029|ref|NP_192772.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
gi|28558077|sp|Q9XF89.1|CB5_ARATH RecName: Full=Chlorophyll a-b binding protein CP26, chloroplastic;
AltName: Full=LHCB5; AltName: Full=LHCIIc; AltName:
Full=Light-harvesting complex II protein 5; Flags:
Precursor
gi|4741958|gb|AAD28776.1|AF134129_1 Lhcb5 protein [Arabidopsis thaliana]
gi|11908106|gb|AAG41482.1|AF326900_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642916|gb|AAK00400.1|AF339718_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|14190463|gb|AAK55712.1|AF380631_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|15983446|gb|AAL11591.1|AF424597_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|4538963|emb|CAB39787.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|7267731|emb|CAB78157.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|15809718|gb|AAL06787.1| AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|332657469|gb|AEE82869.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
Length = 280
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 107/195 (54%), Gaps = 13/195 (6%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL+G GD+G+DP LG+ PEN +Y+ ELIH RWAML ++PEAL
Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAG-----FIIPEALNK 136
Query: 116 --GNWVQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDP 168
N W + G Y G +P + ++ L ++ + D
Sbjct: 137 YGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDF 196
Query: 169 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
E K +PGG FDPLG +KDP++ KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA
Sbjct: 197 EDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFI-QAYVTGEGPVENLA 255
Query: 229 THLADPWHNNIGDVI 243
HL+DP+ NN+ VI
Sbjct: 256 KHLSDPFGNNLLTVI 270
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 103/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F + +
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKF 126
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 185
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 186 IDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 241
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 242 NLADHLADPVNNN 254
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 103/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 127 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 185
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 186 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 241
Query: 226 NLATHLADPWHNN 238
NLA HLADP NN
Sbjct: 242 NLADHLADPVANN 254
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 24 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 83
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + L + VE R
Sbjct: 84 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWATQVLLMGAVEGYRVAGGPLGEV 142
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 143 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 198
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 199 NLADHLADPVNNN 211
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 50 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 109
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 110 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 168
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 169 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 224
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 225 NLADHLADPVNNN 237
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 103/193 (53%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E E+IH RWAML + F IL
Sbjct: 61 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNG 120
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P V ++ I ++ + + FVE R
Sbjct: 121 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPL 179
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 180 GEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 238
Query: 226 NLATHLADPWHNN 238
NL H+ADP NN
Sbjct: 239 NLFDHVADPVANN 251
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 106/194 (54%), Gaps = 11/194 (5%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E E+IH RWAML + F +L
Sbjct: 62 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSKNG 121
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRS----M 164
+ G W +A GG YLG P V ++ I + + + FVE R +
Sbjct: 122 VQFGEAVWFKAGSQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPL 180
Query: 165 EKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
+D +K YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+
Sbjct: 181 GEDLDKL-YPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPV 238
Query: 225 ENLATHLADPWHNN 238
ENL H+ADP NN
Sbjct: 239 ENLVDHIADPVANN 252
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 107/199 (53%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E ELIH RWAML + F +L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLA 119
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P + ++ I ++ + + VE R
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 178
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGGAFDPLG + DP+ F E KVKEIK GRLA+ + GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGAFDPLGLADDPEAFAELKVKEIKKGRLAMFSMFGFFV-QAIVT 234
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 102/193 (52%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E ELIH RWAML + F IL
Sbjct: 61 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELELIHSRWAMLGALGCVFPEILSKNG 120
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P V ++ I ++ + + FVE R
Sbjct: 121 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPL 179
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 180 GEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 238
Query: 226 NLATHLADPWHNN 238
NL H+ DP NN
Sbjct: 239 NLFDHVTDPVANN 251
>gi|242044232|ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 115/205 (56%), Gaps = 27/205 (13%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P +L G PGD+GFD LG P Y E++HCRWAMLA + +++PE L
Sbjct: 111 PEHLTGEYPGDYGFDIAGLGRDPIAFANYFNFEILHCRWAMLAALG-----VVIPELLDL 165
Query: 114 -GLGNWVQAQEW----AAVPGGQATYLGTP---VPWGT-LPTILVIEFLSIAFVEHQRSM 164
GL ++V+ W A + G YLG P + G + I + + L + E+ R
Sbjct: 166 FGLVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQALLMVGPEYARYC 225
Query: 165 EKD---------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
+ P YPGGA FDPLG SKDP FE+ KVKEIKNGRLA++A++GF +
Sbjct: 226 GIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYI- 284
Query: 215 QSAYPGTGPLENLATHLADPWHNNI 239
Q+A G GP++NL HL+DP HNNI
Sbjct: 285 QAAVTGKGPVQNLVEHLSDPLHNNI 309
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 106/199 (53%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFNEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 235
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENL H+ DP +NN
Sbjct: 236 GKGPLENLGDHITDPVNNN 254
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ G+P P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 60 LSGQP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 119 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG 177
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 178 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 233
Query: 220 GTGPLENLATHLADPWHNN 238
G GP+ENLA HLADP +NN
Sbjct: 234 GKGPVENLADHLADPVNNN 252
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 107/194 (55%), Gaps = 10/194 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE +RY+E ELIH RWAML + F +L
Sbjct: 55 GEP-PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSY 113
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG P V ++ IL + + + +E R
Sbjct: 114 GVPFGESVWFKAGAQIFQEGG-LDYLGNPSLVHAQSILAILGTQVILMGAIEGYRVNGGP 172
Query: 167 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
+ K YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPL
Sbjct: 173 LGEGLDKLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPL 231
Query: 225 ENLATHLADPWHNN 238
+NL+ HLA+P NN
Sbjct: 232 QNLSDHLANPGVNN 245
>gi|311994|emb|CAA50763.1| light harvesting complex I chlorophyll binding protein [Pyrobotrys
stellata]
Length = 260
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 120/251 (47%), Gaps = 45/251 (17%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77
+ L ++K+ A + ++ A W PG P P YL G GD+GFDPL G+
Sbjct: 2 AALVANKAALGFRAPAQARRSVVARAEQRASWFPGNPAPEYLKGELAGDYGFDPLGFGDE 61
Query: 78 PENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPG-------G 130
P LE ++EL+HCRWAML IL+PE +GN Q +A PG
Sbjct: 62 PRRLEWMVQAELVHCRWAMLGAAG-----ILLPE---IGNKTGMQ--SAAPGLAFPHWWE 111
Query: 131 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME------------------------K 166
+ PW ++ ++ FL + + EH+R + +
Sbjct: 112 AGKVVAESGPW-SMGSLTFTMFLLMGWAEHKRLYDFVKPGSQAVGWAWAPLGLGSITGVE 170
Query: 167 DP---EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
+P ++ YPGG FDP SK+ K++ YK E+ NGRLA+ A GF Q AYPG GP
Sbjct: 171 EPLVAKENGYPGGIFDPFQMSKNEAKYKWYKQSEVTNGRLAMTAMFGFVSQHIAYPGKGP 230
Query: 224 LENLATHLADP 234
++NL H+++P
Sbjct: 231 IDNLVDHVSNP 241
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 186
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVK IKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 107/199 (53%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E ELIH RWAML + F +L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLA 120
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVT 235
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 236 GKGPLENLADHLADPVNNN 254
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 105/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 72 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 130
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 131 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 189
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 190 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 245
Query: 222 GPLENLATHLADPWHNN 238
GP+ENL HLADP +NN
Sbjct: 246 GPIENLTDHLADPVNNN 262
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 57 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 115
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P + ++ I ++ + + VE R
Sbjct: 116 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 174
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 175 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 230
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 231 GKGPLENLADHLADPVNNN 249
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 34 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 93
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 94 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 152
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 153 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 208
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 209 NLADHLADPVNNN 221
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 92
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 93 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEV 151
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 152 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 207
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 208 NLADHLADPVNNN 220
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 107/199 (53%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ G P P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 55 LSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 113
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 114 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 172
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 173 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 228
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA H+ADP +NN
Sbjct: 229 GKGPLENLADHIADPVNNN 247
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 66 PSYLTSEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 184
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|255646839|gb|ACU23891.1| unknown [Glycine max]
Length = 260
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 115/210 (54%), Gaps = 33/210 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P +LDGS PGDFGFDPL LG PE L+ + ++EL+H RWAMLAV F IL
Sbjct: 59 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAV-----FGIL 113
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
VPE L +++ W G Y P T+ V++ + +VE +R
Sbjct: 114 VPELLERIGYIENFSWYDA--GTREYFVDPT------TLFVVQMGLMGWVEGRRWADIVN 165
Query: 163 --SMEKDPE---------KKKYPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFV 209
S++ +P+ YPGG FDP+ + + P+ + KEIKNG LA+LAFV
Sbjct: 166 PGSVDIEPKVPHVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGGLAMLAFV 225
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GF Q+ Y G GP+ENL HLADP H NI
Sbjct: 226 GFWF-QAIYTGEGPIENLMAHLADPGHCNI 254
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 103/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME------ 165
G W +A GG YLG P V ++ I + + + +E R
Sbjct: 128 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEV 186
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 TDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NL HLADP +NN
Sbjct: 243 NLVDHLADPVNNN 255
>gi|115789|sp|P04780.1|CB22_PETSP RecName: Full=Chlorophyll a-b binding protein 22L, chloroplastic;
AltName: Full=LHCII type I CAB-22L; Short=LHCP; Flags:
Precursor
gi|20475|emb|CAA26212.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F + +
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 165
G W++A GG YLG P V ++ I + L + VE R +
Sbjct: 128 GEAVWLKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVV 186
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKE KNGRLA+ + GF + Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFI-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NLA HL DP +NN
Sbjct: 243 NLADHLVDPVNNN 255
>gi|384253050|gb|EIE26525.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Coccomyxa subellipsoidea C-169]
Length = 272
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 121/249 (48%), Gaps = 50/249 (20%)
Query: 31 VSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELI 90
VS T A A W+PG P +LDGS PGDFGFDPL LG PE L + ESE +
Sbjct: 24 VSRARPVRQTVVRAERALWLPGGDAPAHLDGSLPGDFGFDPLGLGADPERLAWFAESERV 83
Query: 91 HCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPT---- 146
H RWAMLAV ++ P+ W +A L +P+P+G P
Sbjct: 84 HARWAMLAVAGIAVQEVVRPDVF----WYEAA------------LKSPMPFGNSPAAILG 127
Query: 147 ILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGAFDPLGFSKDPQK 189
++ E ++ FVE +R S ++DP + YPGG F P+ P
Sbjct: 128 LVAFELFAMHFVEVRRAYDFKNPGSQDQDPIFSNNKLPKHEVGYPGGIFAPV----IPGD 183
Query: 190 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI--------GD 241
E K+KEIKNGRLA+LAF GF V Q+ G GPL +L HL++P I G
Sbjct: 184 LAELKLKEIKNGRLAMLAFAGF-VMQAQVTGKGPLASLGDHLSNPIGTTIFSKAVVIPGQ 242
Query: 242 VIIPRGIVP 250
I+P ++P
Sbjct: 243 AIVPPCMIP 251
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 111/217 (51%), Gaps = 37/217 (17%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-G 114
P YL+G GD+G+DPL LG+ PE + +Y+E+EL+H RWAMLA IL+PE L
Sbjct: 72 PEYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWAMLAAAG-----ILIPEGLQA 126
Query: 115 LGNWVQAQEW-----AAVPGGQATYLGTPVPWGTLPT------ILVIEFLSIAFVEHQRS 163
G ++ W + GG Y VPWG + ++ +E + VE R
Sbjct: 127 NGANIKGGTWFETGAEMLNGGTLNYFA--VPWGIVSNPLPLFAVIAVEVGLMGAVEFYRR 184
Query: 164 MEKDPEKKK-----------------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALL 206
P YPGG FDPLG + DP+ +E KVKEIKNGRLA++
Sbjct: 185 NGTGPAGYSPGIGKFDSSVFDGLDPLYPGGPFDPLGLADDPEVLQELKVKEIKNGRLAMV 244
Query: 207 AFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
+ +GF V QS G GP N H+ADP+ N+ V+
Sbjct: 245 SVLGFAV-QSYVTGEGPYANWTKHVADPFGYNLLTVL 280
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 105/196 (53%), Gaps = 11/196 (5%)
Query: 51 PGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVP 110
P P YL+G PGD+G+D L PE RY+E E+IH RWAML + +L
Sbjct: 47 PFTKSPSYLNGEYPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAK 106
Query: 111 EALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
+ G W +A PGG YLG P + ++ I+ + L + +E R +
Sbjct: 107 NGVSFGEAVWWKAGSQIFAPGGL-DYLGNPSLIHAQSIIAIVFSQVLLMGLIEGYR-VNG 164
Query: 167 DPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
P + YPG AFDPLG + DP F E +VKEIKNGRLA+ + GF V Q+ G G
Sbjct: 165 GPAGEGLDALYPGEAFDPLGLADDPDTFAELRVKEIKNGRLAMFSMFGFFV-QAIVTGKG 223
Query: 223 PLENLATHLADPWHNN 238
P+ENLA HLA+P NN
Sbjct: 224 PIENLADHLANPSVNN 239
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 107/196 (54%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL G PGD+G+DP L + P++ E+Y+ ELIH RWAML +KF
Sbjct: 92 PEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWAMLGAAGFIIPEAFNKFGANC 151
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + G Y G +P L +V E + + E+ R
Sbjct: 152 GPEAV----WFKTGALL-LDGNTLNYFGKNIPI-NLVLAVVAEVILVGGAEYFRITNGLG 205
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
+ K +PGG FDPLG +KDP + KVKEIKNGRLA+ A +GF Q+ G GP+ENL
Sbjct: 206 FDDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFFF-QAYVTGEGPVENL 264
Query: 228 ATHLADPWHNNIGDVI 243
A HL+DP+ NN+ VI
Sbjct: 265 AKHLSDPFGNNLLTVI 280
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 106/194 (54%), Gaps = 10/194 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE +RY+E ELIH RWAML + F +L
Sbjct: 48 GEP-PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSY 106
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG V ++ IL + L + +E R
Sbjct: 107 GVPFGEAVWFKAGAQIFQEGG-LDYLGNSNLVHAQSILAILGTQVLLMGAIEGYRVNGGP 165
Query: 167 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
+ K YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPL
Sbjct: 166 LGEGLDKLYPGGSFDPLGLADDPDTFSELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPL 224
Query: 225 ENLATHLADPWHNN 238
+NL+ HLA+P NN
Sbjct: 225 QNLSDHLANPGTNN 238
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 103/193 (53%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E E+IH RWAML + F IL
Sbjct: 61 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNG 120
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P V ++ I + + + FVE R
Sbjct: 121 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRVGGGPL 179
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFDPLG + DP F E KVKE+KN RLA+ + GF V Q+ G GP+E
Sbjct: 180 GEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNSRLAMFSMFGFFV-QAIVTGKGPIE 238
Query: 226 NLATHLADPWHNN 238
NLA H+ADP +NN
Sbjct: 239 NLADHVADPVNNN 251
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 103/190 (54%), Gaps = 9/190 (4%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 33 PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKF 92
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DP 168
G W +A GG YLG P V ++ I + + + VE R +
Sbjct: 93 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 151
Query: 169 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
E YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V + G GPLENLA
Sbjct: 152 EDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-XAIVTGKGPLENLA 210
Query: 229 THLADPWHNN 238
HLADP +NN
Sbjct: 211 DHLADPVNNN 220
>gi|312281687|dbj|BAJ33709.1| unnamed protein product [Thellungiella halophila]
Length = 276
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 116/224 (51%), Gaps = 52/224 (23%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W PG P +LDGS GD GFDP LG+ E L+
Sbjct: 59 WFPGAKPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGEVIGIIQDSS 118
Query: 83 -----------------RYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
R++E ELIH RWAML + + + EAL W A +
Sbjct: 119 EINPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGA-----IAVEALTGIAWQDAGKVE 173
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSK 185
V G ++YLG P+P+ +L T++ IE L + ++E QR+ E DPEK+ YPGG FDPLG
Sbjct: 174 LVEG--SSYLGQPLPF-SLTTLIWIEVLVVGYIEFQRNAELDPEKRIYPGGYFDPLGLGS 230
Query: 186 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 229
DP+K + K+ EIK+ RLA++AF+ F + Q+A+ G GP+ +AT
Sbjct: 231 DPEKLDTLKLAEIKHSRLAMVAFLIFGL-QAAFTGKGPISFIAT 273
>gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 219
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 103/193 (53%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E E+IH RWAML + F IL
Sbjct: 17 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNG 76
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P V ++ I ++ + + FVE R
Sbjct: 77 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPL 135
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 136 GEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 194
Query: 226 NLATHLADPWHNN 238
NL H+ADP NN
Sbjct: 195 NLFDHVADPVANN 207
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 101/190 (53%), Gaps = 8/190 (4%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL+G PGD+G+D L PE RY+E E+IH RWAML + +L +
Sbjct: 52 PSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAKNGVSF 111
Query: 116 GNWVQAQEWAAVPGGQA-TYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK 172
G V + A + G YLG V ++ L + + + E R+ + P +
Sbjct: 112 GEAVWFKAGAQIFGSDGLNYLGNSSLVHAQSIIATLACQVILMGGAEAYRAAGEGPGLEG 171
Query: 173 ----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+ENL+
Sbjct: 172 LDSLYPGGPFDPLGLADDPDTFSELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLS 230
Query: 229 THLADPWHNN 238
HLADP NN
Sbjct: 231 DHLADPGVNN 240
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE R +E E+IH RWAML + S F +L +
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGSVFPELLARNGVKF 124
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 165
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 125 GEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWASQVILMGAVEGYRIAGGPLGEV 183
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 184 TDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 239
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 240 NLADHLADPVNNN 252
>gi|75755985|gb|ABA27047.1| TO75-2 [Taraxacum officinale]
Length = 67
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/66 (90%), Positives = 62/66 (93%)
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 244
DP+ F EYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII
Sbjct: 1 NDPKTFAEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 60
Query: 245 PRGIVP 250
P+GI P
Sbjct: 61 PKGIFP 66
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 128/268 (47%), Gaps = 41/268 (15%)
Query: 6 LMSCGIATTAFPS-VLSSSKSKFFTAVSLPAAAN----------ATSKYAMSADWMP--- 51
+ SCGI + AF +SS K + + A + AT K ++SA P
Sbjct: 1 MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKAATKKVSVSASTSPWYG 60
Query: 52 -----------GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVV 100
GEP P YL G PGD+G+D L PE + +E E+IH RWAML +
Sbjct: 61 PDRVLYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 119
Query: 101 SSKFFWILVPEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIA 156
F +L + G W +A GG YLG P V ++ I + + +
Sbjct: 120 GCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLVHAQSILAIWACQVILMG 178
Query: 157 FVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVG 210
VE R DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + G
Sbjct: 179 AVEGYRIAGGPLGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 235
Query: 211 FCVQQSAYPGTGPLENLATHLADPWHNN 238
F V Q+ G GP+ENLA HLADP NN
Sbjct: 236 FFV-QAIVTGKGPIENLADHLADPVSNN 262
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 186
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGPADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|168011208|ref|XP_001758295.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690330|gb|EDQ76697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 124/258 (48%), Gaps = 35/258 (13%)
Query: 3 SNTLMSCGIATTAFPSVLSSSKSKFFTAV--SLPAAANATSKYAMSADWMPGEPRPPYLD 60
S + + G A T+F + + ++ A + +A T W+PG P +LD
Sbjct: 20 SKVVSNVGSARTSFLAGRALRTTQVCGAAKGDMTVSATLTGNKTDRPLWLPGSEAPKWLD 79
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQ 120
GS PGD+GFDPL L P L ++EL+HCRWAML I +PE L +
Sbjct: 80 GSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAG-----IFIPELLTKIGILN 134
Query: 121 AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---- 168
W G ATY T+ ++E L +A+ E +R S+ DP
Sbjct: 135 TPSW--YKAGDATYFADQ------GTLFIVELLLMAWAESRRWADIARPGSVNTDPIFPN 186
Query: 169 -----EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
YPGG FDPLG+ S K +E + KE+KNGRLA+LA +G VQ +
Sbjct: 187 NKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVKNGRLAMLAVLGAFVQANVTH-V 245
Query: 222 GPLENLATHLADPWHNNI 239
GP++NL HLADP+H I
Sbjct: 246 GPIDNLFAHLADPYHTTI 263
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 107/196 (54%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL+G GD+G+DP LG+ PEN +Y+ ELIH RWAML ++PEAL
Sbjct: 85 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGC-----IIPEALNK 139
Query: 116 --GNWVQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
N W + G +Y G +P L +V E + + E+ R D
Sbjct: 140 YGANCGPEAVWFKTGALLLDGNTLSYFGKNIPI-NLVLAVVGEVVLLGGAEYYRITNGLD 198
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPL +KDP++ KVKEIKNGRLA+ + F + Q+ G GP+ENL
Sbjct: 199 FEDKLHPGGPFDPLDLAKDPEQGALLKVKEIKNGRLAMFSMFAFFI-QAYVTGEGPVENL 257
Query: 228 ATHLADPWHNNIGDVI 243
+ HL+DP+ NN+ VI
Sbjct: 258 SKHLSDPFGNNLLTVI 273
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 106/199 (53%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ G P P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 60 LSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 119 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 177
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 178 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 233
Query: 220 GTGPLENLATHLADPWHNN 238
G GP+ENLA HL DP +NN
Sbjct: 234 GKGPIENLADHLTDPVNNN 252
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKE+K GRLA+L+ GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFV-QAIVT 234
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA H+ADP +NN
Sbjct: 235 GKGPLENLADHIADPVNNN 253
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 107/195 (54%), Gaps = 13/195 (6%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL+G PGD+G+DP L + PE+ +Y+ ELIH RWAML +KF
Sbjct: 87 PEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFVIPEAFNKFGADC 146
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDP 168
PEA+ W + + G Y G +P + ++ L ++ + D
Sbjct: 147 GPEAV----WFKTGALL-LDGNTLNYFGKNIPINLVVAVVAEVVLLGGAEYYRITNGLDL 201
Query: 169 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
E K +PGG FDPLG +KDP + KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA
Sbjct: 202 EDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGFFI-QAYVTGKGPVENLA 260
Query: 229 THLADPWHNNIGDVI 243
HL+DP+ NN+ VI
Sbjct: 261 AHLSDPFGNNLLTVI 275
>gi|302833175|ref|XP_002948151.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300266371|gb|EFJ50558.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 247
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 108/193 (55%), Gaps = 27/193 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P +LDG+ GD+GFDPLRLG PE L+ ++E+EL + RWAM AV IL
Sbjct: 32 WYPGATAPKHLDGTMLGDYGFDPLRLGTNPEQLKWFREAELTNGRWAMAAVAG-----IL 86
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRS--MEK 166
+ +GL + W A G + L T PT+ +IE A +E +R +K
Sbjct: 87 FTDLVGLPKF-----WLA--GAEKYALDT-------PTLALIEVAVFAVLEGKRYDIYKK 132
Query: 167 DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
E FDPLG K EE K+KE+KNGRLA+LAFVGFC Q+A G GP+E
Sbjct: 133 TGETGFLSFAPFDPLGM-----KSEEMKLKELKNGRLAMLAFVGFC-SQAAVRGKGPIEC 186
Query: 227 LATHLADPWHNNI 239
L H+ADP H NI
Sbjct: 187 LTDHIADPGHVNI 199
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 104/196 (53%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 62 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCIFPELLSKNG 121
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + F+E R
Sbjct: 122 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWATQVVLMGFIEGYRVGGGPL 180
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 181 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 236
Query: 223 PLENLATHLADPWHNN 238
PLENL+ HLADP NN
Sbjct: 237 PLENLSDHLADPVANN 252
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 111/217 (51%), Gaps = 37/217 (17%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-G 114
P YL+G GD+G+DPL LG+ PE + +Y+E+EL+H RWAMLA IL+PE L
Sbjct: 42 PDYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWAMLAAAG-----ILIPEGLQA 96
Query: 115 LGNWVQAQEW-----AAVPGGQATYLGTPVPWGTLPT------ILVIEFLSIAFVEHQRS 163
G ++ W + GG Y VPWG + ++ +E + VE R
Sbjct: 97 NGANIKGGTWFETGAEMLNGGTLNYF--AVPWGIVSNPLPLFAVIAVEVGLMGAVEFYRR 154
Query: 164 MEKDPEKKK-----------------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALL 206
P YPGG FDPLG + DP+ +E KVKEIKNGRLA++
Sbjct: 155 NGSGPAGYSPGIGKFDSSVFDGLDPLYPGGPFDPLGLADDPEVLQELKVKEIKNGRLAMV 214
Query: 207 AFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
+ +GF V QS G GP N H+ADP+ N+ V+
Sbjct: 215 SVLGFAV-QSYVTGEGPYANWTKHVADPFGYNLLTVL 250
>gi|384251912|gb|EIE25389.1| putative chlorophyll a/b-binding protein [Coccomyxa subellipsoidea
C-169]
Length = 287
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 114/204 (55%), Gaps = 26/204 (12%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G APGD+ +DPL+L + + ++Y E EL+H RWAML + + +PE L
Sbjct: 85 PAYLRGGAPGDYAYDPLQLAQDQDKFDQYFEFELLHARWAMLGALGAG-----IPEILQY 139
Query: 114 -GLGNWVQAQEWAA----VPGGQATYLGTP---VPWGT-LPTILVIEFLSIAFVEHQRSM 164
G+ ++++A+ WA + G YLG + G + I + + L + E+ R+
Sbjct: 140 SGVSDFLEARWWAVGGAKLQGEDLNYLGVSGLRIAGGQGIAIIAICQVLLMFGPEYARAC 199
Query: 165 EKD---------PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQ 215
+ P K YPGG FDPLG SKDP F + +VKEIKNGRLAL+A+VGF Q
Sbjct: 200 GIEALEPLGLYLPGDKNYPGGLFDPLGLSKDPASFADLQVKEIKNGRLALVAWVGFAA-Q 258
Query: 216 SAYPGTGPLENLATHLADPWHNNI 239
+A GP+ +L ADP HNNI
Sbjct: 259 AAVTRKGPIADLLDFAADPVHNNI 282
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 107/199 (53%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ G+P P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 62 LSGQP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 179
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 180 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFV-QAIVT 235
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA H+ DP +NN
Sbjct: 236 GKGPLENLADHITDPVNNN 254
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 113/205 (55%), Gaps = 29/205 (14%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P +L GS PGD+GFD LG+ P +++ E++H RWAMLA + +++PE L
Sbjct: 116 PDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWAMLAALG-----VVIPEVLEK 170
Query: 114 --GLGNWVQAQEW----AAVPGGQATYLGTP----VPWGTLPTILVIEFLSIAFVEHQRS 163
G+ N+ ++ W A + G YLG P V + I + +FL + E+ R
Sbjct: 171 FFGV-NFAESVWWRVGYAKLEGDTLDYLGIPGLHIVGAQGIIVIAICQFLLMVGPEYARY 229
Query: 164 MEKD---------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 213
+ P YPGG FDPLG SKDP FEE KVKEIKNGRLA++A++GF V
Sbjct: 230 CGIEALEPLGIYLPGDINYPGGVLFDPLGLSKDPATFEELKVKEIKNGRLAMVAWLGFYV 289
Query: 214 QQSAYPGTGPLENLATHLADPWHNN 238
Q+ GPLENL HL DP HNN
Sbjct: 290 -QALVTKKGPLENLLDHLQDPLHNN 313
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 98/268 (36%), Positives = 127/268 (47%), Gaps = 41/268 (15%)
Query: 6 LMSCGIATTAFPS-VLSSSKSKFFTAVSLPAAANA----------TSKYAMSADWMP--- 51
+ SCGI + AF +SS K + + A + T K + SA P
Sbjct: 1 MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSASASTSPWYG 60
Query: 52 -----------GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVV 100
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML +
Sbjct: 61 PDRVLYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGAL 119
Query: 101 SSKFFWILVPEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIA 156
F +L + G W +A GG YLG P V ++ I + + +
Sbjct: 120 GCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMG 178
Query: 157 FVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVG 210
VE R DP YPGG+FDPLG + DP F E KVKEIKNGRL + + G
Sbjct: 179 AVEGYRIAGGPLGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLTMFSMFG 235
Query: 211 FCVQQSAYPGTGPLENLATHLADPWHNN 238
F V Q+ G GP+E+LA HLADP +NN
Sbjct: 236 FFV-QAIVTGKGPIEDLADHLADPVNNN 262
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 103/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G P D+G+D L PE + +E E+IHCRWAML + F + +
Sbjct: 68 PSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGAQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 186
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 IDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 98/268 (36%), Positives = 124/268 (46%), Gaps = 36/268 (13%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAAN------ATSKYAMSADWMP--- 51
MAS + SCG A S+ + + A T K ++SA P
Sbjct: 1 MASCGIGSCGFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSVSASTSPWYG 60
Query: 52 -----------GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVV 100
GEP P YL G PGD+G+D L PE + +E E+IH RWAML +
Sbjct: 61 PDRVLYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 119
Query: 101 SSKFFWILVPEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIA 156
F +L + G W +A GG YLG P V ++ I + + +
Sbjct: 120 GCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMG 178
Query: 157 FVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVG 210
VE R DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + G
Sbjct: 179 AVEGYRIAGGPLGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 235
Query: 211 FCVQQSAYPGTGPLENLATHLADPWHNN 238
F V Q+ G GP+ENLA HLADP NN
Sbjct: 236 FFV-QAIVTGKGPIENLADHLADPVSNN 262
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 106/199 (53%), Gaps = 15/199 (7%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ G P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 58 LSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGGLGCVFPELLA 117
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P + ++ I ++ + + VE R
Sbjct: 118 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 176
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 177 GPLGEVVDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 232
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 233 GKGPLENLADHLADPVNNN 251
>gi|356519222|ref|XP_003528272.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Glycine max]
Length = 263
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 119/234 (50%), Gaps = 40/234 (17%)
Query: 33 LPAAANATSKYAMSA-------DWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYK 85
L A AT +Y + W+PG PP+LDG+ GDFGFDPL L E P +L Y
Sbjct: 34 LGDGAAATPRYRQTCVGAQQRPTWLPGLDPPPHLDGTLAGDFGFDPLGLAEDPASLRWYV 93
Query: 86 ESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLP 145
++EL+HCR+AML V F ILV + L + + W G Y +
Sbjct: 94 QAELVHCRFAMLGV-----FGILVTDLLRVTGISKIPVW--FEAGAVKY-----DFANTK 141
Query: 146 TILVIEFLSIAFVEHQRSME-KDPEKKK------------------YPGG-AFDPLGFSK 185
T+ +++ + + FVE +R M+ P + YPGG +PLG +K
Sbjct: 142 TLFLVQLVLMGFVETKRYMDFVSPGSQAKEGSFFGLEASLKGLEPGYPGGPLLNPLGLAK 201
Query: 186 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
D ++K+KEIKNGRLA++A +G VQ S GP++NL HL++PWH I
Sbjct: 202 DINNAHDWKLKEIKNGRLAMVAMLGIFVQASVTH-VGPIDNLVEHLSNPWHKTI 254
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 103/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 64 EGTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCLFPELLAKNG 123
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + +E R
Sbjct: 124 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPL 182
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 238
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP NN
Sbjct: 239 PIENLYDHLADPVANN 254
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 103/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 67 PSYLTGDFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 127 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEI 185
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG FDPLG ++ PQ F+ KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 186 VDP---LYPGGRFDPLGLAERPQAFDALKVKEIKNGRLAMFSMFGFLV-QAIVTGKGPLE 241
Query: 226 NLATHLADPWHNN 238
NLA H+ADP +NN
Sbjct: 242 NLADHIADPVNNN 254
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 102/193 (52%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IHCRWAML + F IL
Sbjct: 62 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNG 121
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P + ++ I + + + F+E R
Sbjct: 122 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRVGGGPL 180
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 181 GEGLDSIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 239
Query: 226 NLATHLADPWHNN 238
NL HLAD NN
Sbjct: 240 NLFDHLADLAANN 252
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 103/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME------ 165
G W +A GG YLG P V ++ I + + + +E R
Sbjct: 128 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEV 186
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPL+
Sbjct: 187 TDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLD 242
Query: 226 NLATHLADPWHNN 238
NL HLADP +NN
Sbjct: 243 NLVDHLADPVNNN 255
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 113/210 (53%), Gaps = 33/210 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P +LDGS PG+FGFDPL LG PE L+ ++EL+H RWAML V IL
Sbjct: 65 WFPGSSPPEWLDGSLPGNFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSG-----IL 119
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
+PE L +V+ W G Y P T+ +++ + +VE +R
Sbjct: 120 IPEILEKIGYVKNFSWYNA--GSVEYFADPT------TLFIVQLALMGWVEGRRWADIVN 171
Query: 163 --SMEKDPEKKK---------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFV 209
S++ +P+ YPGG FDP+ + + P+ + KEIKNGRLA+LAF+
Sbjct: 172 PGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAMLAFL 231
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GFC Q+ Y G P++NL HLADP H NI
Sbjct: 232 GFCF-QAVYVGGSPIDNLMAHLADPGHVNI 260
>gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
Length = 264
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 102/193 (52%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E E+IH RWAML + F IL
Sbjct: 62 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNG 121
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P + ++ I + + + +E R
Sbjct: 122 VKFGEAVWFKAGSQIFQEGG-LDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPL 180
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 181 GEGLDKIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 239
Query: 226 NLATHLADPWHNN 238
NL+ HLADP NN
Sbjct: 240 NLSDHLADPVANN 252
>gi|160713963|gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 109/196 (55%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL+G PGD+G+DP L + P+N RY+ ELIH RWAML +KF
Sbjct: 85 PEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + G Y G +P L +V E + + E+ R + D
Sbjct: 145 GPEAV----WFKTGAL-LLEGNTLNYFGNSIPI-NLAVAVVAEVVLVGGAEYYRIINGLD 198
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG + DP + KVKEIKNGRLA+ + +GF + Q+ G GP+ENL
Sbjct: 199 LEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFI-QAYVTGEGPVENL 257
Query: 228 ATHLADPWHNNIGDVI 243
A HL+DP+ NN+ VI
Sbjct: 258 AKHLSDPFGNNLLTVI 273
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 60 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 118
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG P + ++ I ++ + + VE R
Sbjct: 119 GVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 177
Query: 167 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 178 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 233
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 234 GPLENLADHLADPVNNN 250
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE R +E E+IH RWAML + F +L
Sbjct: 61 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSRN 119
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 120 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP 178
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 179 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 234
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 235 GPLENLADHLADPVNNN 251
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 64 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 122
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 123 GVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 181
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 182 LGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 237
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 238 GPLENLADHLADPVNNN 254
>gi|169261102|gb|ACA52199.1| chloroplast chlorophyll A/B-binding protein [Oenothera elata
subsp. hookeri]
gi|169261104|gb|ACA52200.1| chloroplast chlorophyll A/B-binding protein [Oenothera
grandiflora]
Length = 93
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 73/91 (80%), Gaps = 1/91 (1%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLD 60
MAS L+ CG++ +AFPSVL SSKSKF + S + S+ MSA+WMPG+PRPPYLD
Sbjct: 4 MASK-LLGCGLSASAFPSVLCSSKSKFAGSTSFAGFVSNGSRITMSAEWMPGQPRPPYLD 62
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIH 91
GSAPGDFGFDPLRLGEVPENLER+KESE+ H
Sbjct: 63 GSAPGDFGFDPLRLGEVPENLERFKESEIYH 93
>gi|302808391|ref|XP_002985890.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146397|gb|EFJ13067.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 110/204 (53%), Gaps = 27/204 (13%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P +L GS PGD+GFD LG+ P +++ E++H RWAMLA + +++PE L
Sbjct: 116 PDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWAMLAALG-----VVIPEVLEK 170
Query: 116 GNWVQAQE-------WAAVPGGQATYLGTP----VPWGTLPTILVIEFLSIAFVEHQRSM 164
V+ E +A + G YLG P V + I + +FL + E+ R
Sbjct: 171 FFGVKFAESVWWRVGYAKLEGDTLDYLGIPGLHIVGAQGILVIAICQFLLMVGPEYARYC 230
Query: 165 EKD---------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
+ P YPGG FDPLG SKDP FEE KVKEIKNGRLA++A++GF V
Sbjct: 231 GIEALEPLGIYLPGDINYPGGVLFDPLGLSKDPATFEELKVKEIKNGRLAMVAWLGFYV- 289
Query: 215 QSAYPGTGPLENLATHLADPWHNN 238
Q+ GPLENL HL DP HNN
Sbjct: 290 QALVTKKGPLENLLDHLQDPLHNN 313
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 120
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 179
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 180 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 235
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 236 GPLENLADHLADPVNNN 252
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 102/193 (52%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E ELIH RWAML + F IL
Sbjct: 61 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPEILSKNG 120
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P V ++ I ++ + + FVE R
Sbjct: 121 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPL 179
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 180 GEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV-QAIVRGKGPIE 238
Query: 226 NLATHLADPWHNN 238
NL H+ DP NN
Sbjct: 239 NLFDHVTDPVANN 251
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 107/199 (53%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E ELIH RWAML + F +L
Sbjct: 29 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLA 87
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 88 RNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 146
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 147 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVT 202
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 203 GKGPLENLADHLADPVNNN 221
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 106/194 (54%), Gaps = 10/194 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 76 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARN 134
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG+P V ++ IL + + + +E R
Sbjct: 135 GVKFGEAVWFKAGAQIFSEGG-LDYLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGP 193
Query: 167 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
+ YPGG FDPLG++ DP F E KVKE+KNGRLA+ + GF V Q+ G GPL
Sbjct: 194 LGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPL 252
Query: 225 ENLATHLADPWHNN 238
ENLA HLADP +NN
Sbjct: 253 ENLADHLADPVNNN 266
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 106/194 (54%), Gaps = 10/194 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 76 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARN 134
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG+P V ++ IL + + + +E R
Sbjct: 135 GVKFGEAVWFKAGAQIFSEGG-LDYLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGP 193
Query: 167 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
+ YPGG FDPLG++ DP F E KVKE+KNGRLA+ + GF V Q+ G GPL
Sbjct: 194 LGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPL 252
Query: 225 ENLATHLADPWHNN 238
ENLA HLADP +NN
Sbjct: 253 ENLADHLADPVNNN 266
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 37 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 95
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG P V ++ I ++ + + VE R
Sbjct: 96 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGP 154
Query: 167 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 155 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 210
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 211 GPLENLADHLADPVNNN 227
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 106/194 (54%), Gaps = 10/194 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 76 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARN 134
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG+P V ++ IL + + + +E R
Sbjct: 135 GVKFGEAVWFKAGAQIFSEGG-LDYLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGP 193
Query: 167 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
+ YPGG FDPLG++ DP F E KVKE+KNGRLA+ + GF V Q+ G GPL
Sbjct: 194 LGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPL 252
Query: 225 ENLATHLADPWHNN 238
ENLA HLADP +NN
Sbjct: 253 ENLADHLADPVNNN 266
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 37 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 95
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG P V ++ I ++ + + VE R
Sbjct: 96 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGP 154
Query: 167 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 155 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 210
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 211 GPLENLADHLADPVNNN 227
>gi|255571917|ref|XP_002526901.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223533800|gb|EEF35532.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 282
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 117/224 (52%), Gaps = 52/224 (23%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P +LDG+ GD GFDP LG+ E
Sbjct: 65 WFPGANPPEWLDGTMVGDRGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGVRVEPN 124
Query: 80 --------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
L+R++E E+IH RWAML + + L EAL W A +
Sbjct: 125 EVKPTPFQPYSEVFGLQRFRECEVIHGRWAMLGTLGA-----LAVEALTGVAWQDAGKVE 179
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSK 185
V G ++YLG P+P+ +L T++ IE L I ++E QR+ E DPEK+ YPGG FDPLG +
Sbjct: 180 LVEG--SSYLGQPLPF-SLTTLIWIEVLVIGYIEFQRNAELDPEKRIYPGGYFDPLGLAS 236
Query: 186 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 229
DP+K E ++ EIK+ RLA++AF+ F + Q+A+ G GP+ +AT
Sbjct: 237 DPEKKENLQLAEIKHSRLAMVAFLIFGI-QAAFTGKGPIAFVAT 279
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 37 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 95
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG P V ++ I ++ + + VE R
Sbjct: 96 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGP 154
Query: 167 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 155 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 210
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 211 GPLENLADHLADPVNNN 227
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/268 (36%), Positives = 128/268 (47%), Gaps = 41/268 (15%)
Query: 6 LMSCGIATTAFPS-VLSSSKSKFFTAVSLPAAAN----------ATSKYAMSADWMP--- 51
+ SCGI + AF +SS K V + A + +T K + SA P
Sbjct: 1 MASCGIGSCAFAGGQISSLKPHNNQLVGVGAGVHGEARVTMRKSSTKKVSASASTSPWYG 60
Query: 52 -----------GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVV 100
GEP P YL G PGD+G+D L PE + +E E+IH RWAML +
Sbjct: 61 PDRVLYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 119
Query: 101 SSKFFWILVPEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIA 156
F +L + G W +A GG YLG P V ++ I + + +
Sbjct: 120 GCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMG 178
Query: 157 FVEHQRSME------KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVG 210
VE R DP YPGG+FDPLG + DP F E KVKE+KNGRLA+ + G
Sbjct: 179 AVEGYRIAGGPLGEITDP---IYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFG 235
Query: 211 FCVQQSAYPGTGPLENLATHLADPWHNN 238
F V Q+ G GP+ENLA HLADP +NN
Sbjct: 236 FFV-QAIVTGKGPIENLADHLADPVNNN 262
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 106/194 (54%), Gaps = 10/194 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 76 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARN 134
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG+P V ++ IL + + + +E R
Sbjct: 135 GVKFGEAVWFKAGAQIFSEGG-LDYLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGP 193
Query: 167 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
+ YPGG FDPLG++ DP F E KVKE+KNGRLA+ + GF V Q+ G GPL
Sbjct: 194 LGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPL 252
Query: 225 ENLATHLADPWHNN 238
ENLA HLADP +NN
Sbjct: 253 ENLADHLADPVNNN 266
>gi|732534|gb|AAB40979.1| light harvesting complex a [Volvox carteri]
Length = 264
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 109/209 (52%), Gaps = 35/209 (16%)
Query: 51 PGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVP 110
P P YLDG+ PGDFGFDPL LG P L+ Y ++EL+H R+AMLAV ILVP
Sbjct: 63 PAATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAG-----ILVP 117
Query: 111 EAL-GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------- 162
E L +G A G+ Y ++ ++ L A+ E +R
Sbjct: 118 ELLTNIGFSWPGAGVAWYDAGKFQYFAPA------SSLFGVQMLLFAWAELRRYQDFVKP 171
Query: 163 -SMEKDP----------EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGF 211
S +DP + YPGG FDP G+SK K K KEIKNGRLA+LAF GF
Sbjct: 172 GSANQDPIFSNNKLPDGNEPGYPGGIFDPFGWSKGDMK--SLKTKEIKNGRLAMLAFAGF 229
Query: 212 CVQQSAY-PGTGPLENLATHLADPWHNNI 239
Q AY GT PL+NLATHLADPW +
Sbjct: 230 AAQ--AYTTGTTPLKNLATHLADPWATTV 256
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 37 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 95
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG P V ++ I ++ + + VE R
Sbjct: 96 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGP 154
Query: 167 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 155 LGEVVDP---LYPGGSFDPLGLADDPEAFAEXKVKELKNGRLAMFSMFGFFV-QAIVTGK 210
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 211 GPLENLADHLADPVNNN 227
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 105/190 (55%), Gaps = 9/190 (4%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IH RWAML + F +L +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 125
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 171
G W +A GG YLG P V ++ I ++ + + VE R P +
Sbjct: 126 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPPGEV 184
Query: 172 K---YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
YPGG+FDPLG ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+ENLA
Sbjct: 185 VDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLA 243
Query: 229 THLADPWHNN 238
HLADP +NN
Sbjct: 244 DHLADPVNNN 253
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 101/193 (52%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E E+IHCRWAML + F IL
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P V ++ I + + + +E R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGLIEGYRVGGGPL 181
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 182 GEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 240
Query: 226 NLATHLADPWHNN 238
NL + DP NN
Sbjct: 241 NLFDQINDPVANN 253
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 100/190 (52%), Gaps = 8/190 (4%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE RY+E E+IH RWAML + +L +
Sbjct: 47 PSYLKGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAKNGVSF 106
Query: 116 GNWVQAQEWAAVPGGQA-TYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK 172
G V + A + G YLG P V ++ L + + + E R+ + P +
Sbjct: 107 GEAVWFKAGAQIFGSDGLNYLGNPSLVHAQSIIATLACQVILMGGAEAYRANGEGPGVEG 166
Query: 173 ----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
YPGG FDPLG + DP F E K KEIKNGRLA+ + GF V Q+ G GP+ENL+
Sbjct: 167 LDSLYPGGPFDPLGLADDPDTFAELKTKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLS 225
Query: 229 THLADPWHNN 238
HLADP NN
Sbjct: 226 DHLADPGVNN 235
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 315
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 113/205 (55%), Gaps = 27/205 (13%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+GFD LG P Y E++HCRWAMLA + ++VPE L
Sbjct: 112 PEYLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALG-----VVVPELLDL 166
Query: 114 -GLGNWVQAQEW----AAVPGGQATYLGTP---VPWGT-LPTILVIEFLSIAFVEHQRSM 164
GL ++V+ W A + G YLG P + G + I + + L + E+ R
Sbjct: 167 FGLVHFVEPVWWKVGYAKLQGDNLDYLGIPGFRIAGGQGVVVIAICQALLMVGPEYARYC 226
Query: 165 EKD---------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
+ P YPGG FDPLG SKDP FE+ KVKEIKNGRLA++A+ GF +
Sbjct: 227 GIEALEPLGIYLPGDINYPGGPLFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWFGFYI- 285
Query: 215 QSAYPGTGPLENLATHLADPWHNNI 239
Q+A G GP++NL HL+DP +NNI
Sbjct: 286 QAAVTGKGPVQNLVEHLSDPLNNNI 310
>gi|168060921|ref|XP_001782441.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666112|gb|EDQ52776.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 238
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 107/210 (50%), Gaps = 33/210 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W+PG P +LDGS PGD+GFDPL L P L ++EL+HCRWAML I
Sbjct: 17 WLPGSEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAG-----IF 71
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
+PE L + W G ATY T+ ++E L +A+ E +R
Sbjct: 72 IPELLTKIGILNTPSW--YKAGDATYFADQ------GTLFIVELLLMAWAESRRWADIAR 123
Query: 163 --SMEKDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFV 209
S+ DP YPGG FDPLG+ S K +E + KE+KNGRLA+LA +
Sbjct: 124 PGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVKNGRLAMLAVL 183
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
G VQ + GP++NL HLADP+H I
Sbjct: 184 GAFVQANVTH-VGPIDNLFAHLADPYHTTI 212
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 35 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 93
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG P V ++ I ++ + + VE R
Sbjct: 94 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGP 152
Query: 167 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 153 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 208
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 209 GPLENLADHLADPVNNN 225
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 35 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 93
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG P V ++ I ++ + + VE R
Sbjct: 94 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGP 152
Query: 167 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 153 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 208
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 209 GPLENLADHLADPVNNN 225
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 103/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE R +E E+IH RWAML + F +L +
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 124
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 165
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 125 GEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 183
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 184 TDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSIFGFFV-QAIVTGKGPLE 239
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 240 NLADHLADPVNNN 252
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 103/193 (53%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F IL
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILARNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P V ++ I + + + FVE R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRVGGGPL 181
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 182 GEGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 240
Query: 226 NLATHLADPWHNN 238
NL HLADP NN
Sbjct: 241 NLYDHLADPVANN 253
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 103/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 64 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTG 123
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + +E R
Sbjct: 124 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPL 182
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 238
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP NN
Sbjct: 239 PIENLFDHLADPTANN 254
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 104/192 (54%), Gaps = 17/192 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L P+ RY+E E+IH RWAML + +VPE L
Sbjct: 56 PSYLTGEFPGDYGWDTAGLSADPQTFARYREIEVIHARWAMLGALGC-----VVPELLDG 110
Query: 116 GN---WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 170
N W A G YLG P + ++ L+++ + +++VE R + P
Sbjct: 111 TNHIAWFNAGATIFSDDGL-QYLGIPGLINAKSIVATLIVQVILMSYVEGYR-VNGGPAG 168
Query: 171 KK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
YPGG+FDPLG + DP F E KVKEIKNGRLA+L+ GF + Q+ G GP+EN
Sbjct: 169 TGLDAVYPGGSFDPLGLADDPDTFSELKVKEIKNGRLAMLSMFGFFI-QAIVTGEGPIEN 227
Query: 227 LATHLADPWHNN 238
L HLAD NN
Sbjct: 228 LNKHLADASANN 239
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 65 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 123
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 124 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP 182
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 183 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 238
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 239 GPLENLADHLADPVNNN 255
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
Length = 263
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 102/193 (52%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E E+IH RWAML + F IL
Sbjct: 61 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNG 120
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P V ++ I ++ + + FVE R
Sbjct: 121 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPL 179
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YP GAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 180 GEGLDKVYPSGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 238
Query: 226 NLATHLADPWHNN 238
NL H+ADP NN
Sbjct: 239 NLFDHVADPVANN 251
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 106/194 (54%), Gaps = 10/194 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 76 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARN 134
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG+P + ++ IL + + + +E R
Sbjct: 135 GVKFGEAVWFKAGAQIFSEGG-LDYLGSPNLIHAQSILAILACQVILMGAIEGYRVAGGP 193
Query: 167 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
+ YPGG FDPLG++ DP F E KVKE+KNGRLA+ + GF V Q+ G GPL
Sbjct: 194 LGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPL 252
Query: 225 ENLATHLADPWHNN 238
ENLA HLADP +NN
Sbjct: 253 ENLADHLADPVNNN 266
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 120
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 179
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 180 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 235
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 236 GPLENLADHLADPVNNN 252
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 120
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 179
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 180 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 235
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 236 GPLENLADHLADPVNNN 252
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 103/193 (53%), Gaps = 16/193 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 69 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 127
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 187 LGXVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 242
Query: 222 GPLENLATHLADP 234
GP+ENLA HLADP
Sbjct: 243 GPIENLADHLADP 255
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 104/196 (53%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D + PE + +E E+IHCRWAML + F +LV
Sbjct: 24 EGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLVKNG 83
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + +E R
Sbjct: 84 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPL 142
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 143 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 198
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP NN
Sbjct: 199 PIENLYDHLADPVANN 214
>gi|168057356|ref|XP_001780681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667846|gb|EDQ54465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 111/211 (52%), Gaps = 33/211 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W+PG P +LDG+ GDFGFDPL LG+ P++L Y ++EL+H R+AM V IL
Sbjct: 5 WLPGTTPPAHLDGTLAGDFGFDPLGLGQDPQDLRWYVQAELVHSRFAMAGVAG-----IL 59
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ L W + + T T+ V++ + + FVE +R M+
Sbjct: 60 FTDLLRASGRTDIPVWFEAGATKFDFADT-------TTLFVVQLILMGFVETKRWMDIVK 112
Query: 167 -----------------DPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAF 208
+ + YPGG F+PLGF+ DP K + + KEIKNGRLA++A
Sbjct: 113 PGSQAAEDSFFGFEAAFEGLETGYPGGPLFNPLGFANDPTKPQPLRWKEIKNGRLAMVAM 172
Query: 209 VGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
VGF V Q+ TGP+ENL THL+DP HN I
Sbjct: 173 VGFMV-QAYVTKTGPIENLLTHLSDPVHNTI 202
>gi|308808233|ref|XP_003081427.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029293|gb|AAY27545.1| chloroplast light-harvesting complex I protein precursor Lhca2
[Ostreococcus tauri]
gi|116059889|emb|CAL55596.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 242
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 105/210 (50%), Gaps = 44/210 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG+ P+LDGS PGDFGFDPL L PE + ++EL H RWAML V + +
Sbjct: 42 WYPGKAPAPHLDGSLPGDFGFDPLSLSADPEMRKWMVQAELQHARWAMLGVAGA-----V 96
Query: 109 VPEAL------GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR 162
PE L L NWV A GT W + I+ + E +R
Sbjct: 97 APELLTKIGVADLPNWVDA--------------GTYQYWAPAGPLFFIQMAMFNWAEVRR 142
Query: 163 --------SMEKDP----------EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLA 204
SM DP YPGG FD LG++KDP K +E K+KEIKNGRLA
Sbjct: 143 WQDMKNPGSMNTDPLFGYNSNDTNTDVGYPGGLFDKLGYAKDPAKAKELKLKEIKNGRLA 202
Query: 205 LLAFVGFCVQQSAYPGTGPLENLATHLADP 234
++AF+G C Q G GP+ENL +H+A P
Sbjct: 203 MVAFLGICAQY-VQTGQGPVENLFSHIASP 231
>gi|388518909|gb|AFK47516.1| unknown [Lotus japonicus]
Length = 266
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 115/219 (52%), Gaps = 33/219 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W+PG P YLDG+ GD+GFDPL LGE PE+L Y ++EL+H R+AML V F IL
Sbjct: 60 WLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGV-----FGIL 114
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME--- 165
V + L + + W + + T T+++++ L + F E +R M+
Sbjct: 115 VTDLLRVTGLSKIPVWFEAGAVKYEFTNT-------QTLIIVQLLLMGFAETKRYMDFIG 167
Query: 166 KDPEKKK----------------YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAF 208
+ K+ YPGG +PLG +KD + E K+KEIKNGRLA++A
Sbjct: 168 PGSQAKEGSFFGLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAI 227
Query: 209 VGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRG 247
+G VQ S GP++NL HL++PWH + + G
Sbjct: 228 LGIFVQASV-THVGPIDNLVEHLSNPWHKTVIQTLASSG 265
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 64 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 122
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP 181
Query: 167 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 182 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 237
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 238 GPLENLADHLADPVNNN 254
>gi|388510254|gb|AFK43193.1| unknown [Lotus japonicus]
Length = 213
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 113/211 (53%), Gaps = 33/211 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W+PG P YLDG+ GD+GFDPL LGE PE+L Y ++EL+H R+AML V F IL
Sbjct: 7 WLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGV-----FGIL 61
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME--- 165
V + L + + W + + T T+++++ L + F E +R M+
Sbjct: 62 VTDLLRVTGLSKIPVWFEAGAVKYEFTNT-------QTLIIVQLLLMGFAETKRYMDFIS 114
Query: 166 KDPEKKK----------------YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAF 208
+ K+ YPGG +PLG +KD + E K+KEIKNGRLA++A
Sbjct: 115 PGSQAKEGSFFGLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAI 174
Query: 209 VGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+G VQ S GP++NL HL++PWH +
Sbjct: 175 LGIFVQASV-THVGPIDNLVEHLSNPWHKTV 204
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 121
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 181 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 236
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 237 GPLENLADHLADPVNNN 253
>gi|225458605|ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|302142320|emb|CBI19523.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 115/218 (52%), Gaps = 39/218 (17%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W+PG PPYL+G+ GDFGFDPL LGE PENL Y ++EL+H R+AM V IL
Sbjct: 59 WLPGLDPPPYLNGTLAGDFGFDPLGLGEDPENLRWYVQAELVHARFAMAGVAG-----IL 113
Query: 109 VPEAL---GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME 165
V + L G+ N E AV + + + +++ + + FVE +R M+
Sbjct: 114 VTDLLRVTGISNLPVWYEAGAV----------KFEFASTEALFIVQLILMGFVETKRYMD 163
Query: 166 -KDPEKKK------------------YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLAL 205
+P + YPGG +PLG ++D + ++K+KEIKNGRLA+
Sbjct: 164 FTNPGSQAKEGSFFGLEAALEGLEPGYPGGPLLNPLGLARDIKNAHDWKLKEIKNGRLAM 223
Query: 206 LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
+A +G VQ S GP+ENL HL++PWH I I
Sbjct: 224 VAMLGVFVQASV-THAGPIENLVEHLSNPWHKTIIQTI 260
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 120/248 (48%), Gaps = 39/248 (15%)
Query: 17 PSVLSSSKSKFFTAVSLPAAANATSKYAMSAD------WMPGEPRPPYLDGSAPGDFGFD 70
PS L K + +S+ A + + + A W PG P +LDGS PGDFGFD
Sbjct: 16 PSFLCGKKLRLNKKLSVAAVSKSAASVRAVAADPERPIWFPGSTPPEWLDGSLPGDFGFD 75
Query: 71 PLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGG 130
PL L P++L+ ++E++HCRWAML I +PE L + W G
Sbjct: 76 PLGLSSDPDSLKWNVQAEIVHCRWAMLGAAG-----IFIPEFLTKIGILNTPSWYTA--G 128
Query: 131 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKY 173
+ Y T+ V+E + I + E +R S+ DP Y
Sbjct: 129 EQEYFTDKT------TLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGY 182
Query: 174 PGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 231
PGG FDPLG+ S P K +E + KEIKNGRL +LA +G Q Y GTGP++NL HL
Sbjct: 183 PGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLTMLAVMGAWFQH-IYTGTGPIDNLFAHL 241
Query: 232 ADPWHNNI 239
ADP H I
Sbjct: 242 ADPGHATI 249
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 121
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 181 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 236
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 237 GPLENLADHLADPVNNN 253
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 121
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 181 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 236
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 237 GPLENLADHLADPVNNN 253
>gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|62733869|gb|AAX95978.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864184|gb|ABA92338.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
gi|113644815|dbj|BAF27956.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|125576735|gb|EAZ17957.1| hypothetical protein OsJ_33501 [Oryza sativa Japonica Group]
gi|215692422|dbj|BAG87842.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704351|dbj|BAG93785.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 283
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 108/196 (55%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL+G PGD+G+DP L + PE+ +Y+ ELIH RWAML +KF
Sbjct: 85 PDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + G Y G +P L + E + + E+ R + D
Sbjct: 145 GPEAV----WFKTGALL-LDGNTLNYFGNSIPI-NLIVAVAAEVVLVGGAEYYRIINGLD 198
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG + DP + KVKEIKNGRLA+ + +GF + Q+ G GP+ENL
Sbjct: 199 LEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFI-QAYVTGEGPVENL 257
Query: 228 ATHLADPWHNNIGDVI 243
+ HL+DP+ NN+ VI
Sbjct: 258 SKHLSDPFGNNLLTVI 273
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 64 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 122
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP 181
Query: 167 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 182 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 237
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 238 GPLENLADHLADPVNNN 254
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 101/193 (52%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F IL
Sbjct: 62 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPEILAKNG 121
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 122 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPL 180
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ YPGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 181 GEGLDAIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 239
Query: 226 NLATHLADPWHNN 238
NL HLADP NN
Sbjct: 240 NLYDHLADPVANN 252
>gi|297835814|ref|XP_002885789.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297331629|gb|EFH62048.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 104/196 (53%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F IL
Sbjct: 63 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I ++ + + F+E R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPL 181
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPL ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP NN
Sbjct: 238 PIENLFDHLADPVANN 253
>gi|125533937|gb|EAY80485.1| hypothetical protein OsI_35663 [Oryza sativa Indica Group]
Length = 283
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 108/196 (55%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL+G PGD+G+DP L + PE+ +Y+ ELIH RWAML +KF
Sbjct: 85 PEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + G Y G +P L + E + + E+ R + D
Sbjct: 145 GPEAV----WFKTGALL-LDGNTLNYFGNSIPI-NLIVAVAAEVVLVGGAEYYRIINGLD 198
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG + DP + KVKEIKNGRLA+ + +GF + Q+ G GP+ENL
Sbjct: 199 LEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFI-QAYVTGEGPVENL 257
Query: 228 ATHLADPWHNNIGDVI 243
+ HL+DP+ NN+ VI
Sbjct: 258 SKHLSDPFGNNLLTVI 273
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 103/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 64 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTG 123
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + +E R
Sbjct: 124 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPL 182
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLGLADDPESFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 238
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP NN
Sbjct: 239 PIENLYDHLADPTANN 254
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 104/196 (53%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F IL
Sbjct: 63 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I ++ + + F+E R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPL 181
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPL ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP NN
Sbjct: 238 PIENLFDHLADPVANN 253
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 108/197 (54%), Gaps = 12/197 (6%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P + ++ I + + + VE R +
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYR-IA 177
Query: 166 KDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
P + YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 178 GGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 236
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 237 GPLENLADHLADPVNNN 253
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 104/196 (53%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F IL
Sbjct: 63 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I ++ + + F+E R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPL 181
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPL ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP NN
Sbjct: 238 PIENLFDHLADPVANN 253
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 104/196 (53%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F IL
Sbjct: 63 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I ++ + + F+E R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPL 181
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPL ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP NN
Sbjct: 238 PIENLFDHLADPVANN 253
>gi|224284588|gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 104/191 (54%), Gaps = 9/191 (4%)
Query: 55 RPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALG 114
+P YL G PGD+G+D L PE + +E E+IH RWAML + F +L +
Sbjct: 78 QPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVK 137
Query: 115 LGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---D 167
G W +A GG YLG+P V ++ IL + + + +E R +
Sbjct: 138 FGEAVWFKAGAQIFSEGG-LDYLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGPLGE 196
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
YPGG FDPLG++ DP F E KVKE+KNGRLA+ + GF V Q+ G GPLENL
Sbjct: 197 VTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENL 255
Query: 228 ATHLADPWHNN 238
A HLADP +NN
Sbjct: 256 ADHLADPVNNN 266
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 64 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 122
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP 181
Query: 167 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 182 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 237
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 238 GPLENLADHLADPVNNN 254
>gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanum lycopersicum]
Length = 286
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 110/196 (56%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL+G PG++G+DP L + PE+ +Y+ ELIH RWAML +KF
Sbjct: 88 PEYLNGEVPGEYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 147
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + G Y G +P L +V E + + E+ R + D
Sbjct: 148 GPEAV----WFKTGALL-LDGNTLNYFGKNIPI-NLILAVVAEVVLVGGAEYYRIINGLD 201
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG +KDP + KVKEIKNGRLA+ + +GF + Q+ G GP+ENL
Sbjct: 202 LEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFSMLGFFI-QAYVTGQGPVENL 260
Query: 228 ATHLADPWHNNIGDVI 243
A HL+DP+ NN+ VI
Sbjct: 261 AAHLSDPFGNNLLTVI 276
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 103/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IHCRWAML + F IL
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRIGGGPL 181
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ PG G
Sbjct: 182 GEGLDP---LYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVPGKG 237
Query: 223 PLENLATHLADPWHNN 238
P+ENL+ LA P NN
Sbjct: 238 PIENLSDPLAAPVANN 253
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 104/196 (53%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F IL
Sbjct: 63 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I ++ + + F+E R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPL 181
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPL ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP NN
Sbjct: 238 PIENLFDHLADPVANN 253
>gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|51091350|dbj|BAD36085.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|51091400|dbj|BAD36143.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|113631508|dbj|BAF25189.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|215695401|dbj|BAG90592.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 112/210 (53%), Gaps = 33/210 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG PP+LDGS PGDFGFDPL LG PE L + ++EL+H RWAMLAV IL
Sbjct: 62 WFPGSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAG-----IL 116
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME--- 165
VPE L W ++++ + G Y P T+ V + + + E +R +
Sbjct: 117 VPEV--LEKWGFMEDYSWIDAGARDYFADPW------TLFVSQMALMGWAEGRRWADYLN 168
Query: 166 --------KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFV 209
+ P ++ YPGG FD + + P+ + KEIKNGRLA+LAFV
Sbjct: 169 PGCVAVEPRLPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNGRLAMLAFV 228
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GF Q+ Y G GP++NL HLADP H N+
Sbjct: 229 GFWF-QAVYTGEGPIDNLLHHLADPGHCNV 257
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 103/193 (53%), Gaps = 16/193 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 69 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 127
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 187 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 242
Query: 222 GPLENLATHLADP 234
GP+ENLA HLADP
Sbjct: 243 GPIENLADHLADP 255
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 102/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F IL
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VKFGESVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPL 181
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---IYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIITGKG 237
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP NN
Sbjct: 238 PIENLLDHLADPVANN 253
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 103/193 (53%), Gaps = 16/193 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 69 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 127
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 187 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 242
Query: 222 GPLENLATHLADP 234
GP+ENLA HLADP
Sbjct: 243 GPIENLADHLADP 255
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IH RWAML + S F +L +
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKF 92
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 93 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 151
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 152 VDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 207
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 208 NLADHLADPVNNN 220
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 61 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 119
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 120 GVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 178
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + +GF V Q+ G
Sbjct: 179 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMLGFFV-QAIVTGK 234
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 235 GPLENLADHLADPVNNN 251
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 124/261 (47%), Gaps = 41/261 (15%)
Query: 9 CGIATTAFPS-VLSSSKSKFFTAVSLPAAAN----------ATSKYAMSADWMP------ 51
CGI + AF +SS K V + A + AT K +SA P
Sbjct: 1 CGIGSCAFAGGQISSLKPHTNQLVGVGAGVHGESRVTMRKSATKKSVVSASPSPWYGPDR 60
Query: 52 --------GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSK 103
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML +
Sbjct: 61 VLYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCV 119
Query: 104 FFWILVPEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVE 159
F +L + G W +A GG YLG P + ++ I + + + VE
Sbjct: 120 FPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVILMGAVE 178
Query: 160 HQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 213
R DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V
Sbjct: 179 GYRIAGGPLGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV 235
Query: 214 QQSAYPGTGPLENLATHLADP 234
Q+ G GP+ENLA HLADP
Sbjct: 236 -QAIVTGKGPIENLADHLADP 255
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 104/194 (53%), Gaps = 11/194 (5%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F IL
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP 168
+ G W +A GG YLG P V ++ I + + + FVE R + P
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWASQVVLMGFVEGYR-VGGGP 180
Query: 169 E----KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
K YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+
Sbjct: 181 LGWGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPI 239
Query: 225 ENLATHLADPWHNN 238
ENL HLADP NN
Sbjct: 240 ENLYDHLADPVANN 253
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 108/196 (55%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL+G PGD+G+DP L + P+N RY+ ELIH RWAML +KF
Sbjct: 85 PEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + G Y G +P L +V E + + E+ R + D
Sbjct: 145 GPEAV----WFKTGAL-LLEGNTLNYFGNSIPI-NLAVAVVAEVVLVGGAEYYRIINGLD 198
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG + DP + KVKEIKNGRLA+ +GF + Q+ G GP+ENL
Sbjct: 199 LEGKLHPGGPFDPLGLASDPDQAAPLKVKEIKNGRLAMFPMLGFFI-QAYVTGEGPVENL 257
Query: 228 ATHLADPWHNNIGDVI 243
A HL+DP+ NN+ VI
Sbjct: 258 AKHLSDPFGNNLLTVI 273
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 103/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E E+IH RWAML + F IL
Sbjct: 63 EQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I ++ + + FVE R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPL 181
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---IYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 223 PLENLATHLADPWHNN 238
P++NL H+ADP NN
Sbjct: 238 PIQNLYDHVADPVANN 253
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 103/193 (53%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F IL
Sbjct: 62 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 121
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P + ++ I + + + +E R
Sbjct: 122 VKFGEAVWFKAGSQIFQEGG-LDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPL 180
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 181 GEGLDKLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 239
Query: 226 NLATHLADPWHNN 238
NL+ HLADP NN
Sbjct: 240 NLSDHLADPVANN 252
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 107/199 (53%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 120 RNGVQFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVT 234
Query: 220 GTGPLENLATHLADPWHNN 238
G GP+ENLA HLADP +NN
Sbjct: 235 GNGPIENLADHLADPVNNN 253
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 115/205 (56%), Gaps = 27/205 (13%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA--- 112
P YL G PGD+GFD LG+ P L++Y E++H RWAMLA V + L+PE
Sbjct: 122 PSYLTGELPGDYGFDIAGLGQDPVALQKYFNFEILHARWAMLASVGA-----LIPEILDL 176
Query: 113 LGLGNWVQAQEW----AAVPGGQATYLGTP-VPWGTLPTILVIEFLSIAFV---EHQRSM 164
LG ++V+ W + + G YLG + + ++VI + E+ R
Sbjct: 177 LGAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIAICQALLMVGPEYARYC 236
Query: 165 EKD---------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
+ P YPGGA FDPL S DP+ FEE KVKEIKNGRLA++A++GF V
Sbjct: 237 GIEALEPLGIYLPGDINYPGGALFDPLNLSNDPEAFEELKVKEIKNGRLAMVAWLGFYV- 295
Query: 215 QSAYPGTGPLENLATHLADPWHNNI 239
Q+A G GP++NL H++DP+HNN+
Sbjct: 296 QAALTGKGPVQNLIDHISDPFHNNL 320
>gi|358248712|ref|NP_001240183.1| uncharacterized protein LOC100793702 [Glycine max]
gi|255635740|gb|ACU18219.1| unknown [Glycine max]
Length = 265
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 103/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E E+IH RWAML + F IL
Sbjct: 63 EQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I ++ + + FVE R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPL 181
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---IYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 223 PLENLATHLADPWHNN 238
P++NL H+ADP NN
Sbjct: 238 PIQNLYDHVADPVANN 253
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 107/199 (53%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 56 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 114
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 115 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG 173
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 174 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVT 229
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 230 GKGPLENLADHLADPVNNN 248
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 65 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 123
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME-- 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 124 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 182
Query: 166 ----KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 183 LGEITDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 238
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 239 GPLENLADHLADPVNNN 255
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 63 GEP-PSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 121
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME-- 165
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180
Query: 166 ----KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 181 LGEITDP---IYPGGSFDPLGLADDPEAFSELKVKELKNGRLAMFSMFGFFV-QAIVTGK 236
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 237 GPLENLADHLADPVNNN 253
>gi|21419|emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [Solanum tuberosum]
Length = 267
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 103/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWA+L + F +L +
Sbjct: 68 PSYLTGEKPGDYGWDTAGLSADPETFAKNRELEVIHCRWAILERLGCVFPELLSRNGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W + GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKVGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 186
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|365268967|gb|AEW70716.1| light harvesting chlorophyll a-b binding protein 2-1 [Phyllostachys
edulis]
Length = 263
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 102/193 (52%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G GD+G+D L PE R +E E+IH RWAML + F IL
Sbjct: 61 EQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNG 120
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P V ++ I + + + FVE R
Sbjct: 121 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRVGGGPL 179
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 180 GEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 238
Query: 226 NLATHLADPWHNN 238
NL H+ADP +NN
Sbjct: 239 NLFDHVADPVNNN 251
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 103/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 62 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNG 121
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P V ++ I + + + +E R
Sbjct: 122 VQFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPL 180
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 181 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 236
Query: 223 PLENLATHLADPWHNN 238
P+ENLA H+ADP NN
Sbjct: 237 PIENLADHIADPVANN 252
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium
longiflorum]
Length = 264
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 103/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 62 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNG 121
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P V ++ I ++ + + F+E R
Sbjct: 122 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWAVQVVLMGFIEGYRIGGGPL 180
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 181 GEGLDP---LYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 236
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP NN
Sbjct: 237 PVENLYDHLADPATNN 252
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 101/193 (52%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E E+IH RWAML + F IL
Sbjct: 58 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNG 117
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P V ++ I + + + FVE R
Sbjct: 118 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPL 176
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFDPLG + DP E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 177 GEGLDKVYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 235
Query: 226 NLATHLADPWHNN 238
NL H+ADP NN
Sbjct: 236 NLFDHVADPVANN 248
>gi|357157014|ref|XP_003577654.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 109/196 (55%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL+G PGD+G+DP L + P++ +Y+ ELIH RWAML +KF
Sbjct: 88 PEYLNGEVPGDYGYDPFGLSKKPDDFTKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 147
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + G Y G +P L +V E + + E+ R + D
Sbjct: 148 GPEAV----WFKTGALL-LDGNTLNYFGNSIPI-NLILAVVAEVVLVGGAEYYRIINGLD 201
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG + DP + KVKEIKNGRLA+ + +GF + Q+ G GP+ENL
Sbjct: 202 LEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFI-QAYVTGEGPVENL 260
Query: 228 ATHLADPWHNNIGDVI 243
+ HL+DP+ NN+ VI
Sbjct: 261 SAHLSDPFGNNLLTVI 276
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 53 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 111
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 112 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 170
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 171 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 226
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 227 GPLENLADHLADPVNNN 243
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 101/193 (52%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E E+IH RWAML + F IL
Sbjct: 58 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNG 117
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P V ++ I + + + FVE R
Sbjct: 118 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPL 176
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFDPLG + DP E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 177 GEGLDKVYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 235
Query: 226 NLATHLADPWHNN 238
NL H+ADP NN
Sbjct: 236 NLFDHVADPVANN 248
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 61 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 119
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 120 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 178
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 179 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 234
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 235 GPLENLADHLADPVNNN 251
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 108/197 (54%), Gaps = 12/197 (6%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 120
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P + ++ I + + + VE R +
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYR-IA 178
Query: 166 KDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
P + YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 179 GGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 237
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA H+ADP +NN
Sbjct: 238 GPLENLADHIADPVNNN 254
>gi|149392272|gb|ABR25974.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 253
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 102/193 (52%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+ +D L PE R +E E+IH RWAML + F IL
Sbjct: 51 EQTPSYLTGEFPGDYRWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNG 110
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P V ++ I ++ + + FVE R
Sbjct: 111 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPL 169
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 170 GEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 228
Query: 226 NLATHLADPWHNN 238
NL H+ADP NN
Sbjct: 229 NLFDHVADPVANN 241
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 105/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE R E E+IH RWAML + F +L
Sbjct: 61 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNPELEVIHSRWAMLGALGCVFPELLSRN 119
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 120 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP 178
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 179 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 234
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 235 GPLENLADHLADPVNNN 251
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 102/191 (53%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE +Y+E E+IH RWAML + +L +
Sbjct: 36 PSYLSGEYPGDYGWDTAGLSADPETFAKYREIEVIHARWAMLGALGCLTPELLAKNGVSF 95
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DP 168
G W +A PGG YLG P V ++ IL + L + +E R +
Sbjct: 96 GEAVWWKAGAQIFAPGG-LDYLGNPSLVHAQSIIAILASQVLLMGAIEGYRVYGGPGGEG 154
Query: 169 EKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
K YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLENL
Sbjct: 155 LDKVYPGGDYFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENL 213
Query: 228 ATHLADPWHNN 238
+HLADP NN
Sbjct: 214 ESHLADPSVNN 224
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 105/195 (53%), Gaps = 13/195 (6%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA--- 112
P YL G PGD+G+D L PE +R++ E+IH RWAML + F +L +
Sbjct: 54 PAYLTGEFPGDYGWDTSGLSADPETFKRFRTVEVIHARWAMLGALGCIFPEVLEKYSGVE 113
Query: 113 LGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP-- 168
G W +A GG YLG P V ++ LV++ L + VE R+ + P
Sbjct: 114 FGEAVWFKAGAQIFADGG-LNYLGNPGLVHAQSIVATLVVQVLLMGAVEIYRANGEGPSG 172
Query: 169 ----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
+ YPGGAFDPLG + DP E KVKE+KNGRLA+++ +GF V Q+ G GPL
Sbjct: 173 FGEGQDNLYPGGAFDPLGLADDPDTLAELKVKELKNGRLAMMSMLGFFV-QAIVTGKGPL 231
Query: 225 ENLATHLADPWHNNI 239
+NL THL +P N
Sbjct: 232 DNLLTHLEEPGEFNF 246
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 104/194 (53%), Gaps = 10/194 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 76 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 134
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG+P + ++ I + + + +E R
Sbjct: 135 GVKFGEAVWFKAGAQIFSEGG-LDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGP 193
Query: 167 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
+ YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+
Sbjct: 194 LGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPI 252
Query: 225 ENLATHLADPWHNN 238
ENLA HLADP +NN
Sbjct: 253 ENLADHLADPVNNN 266
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE R +E E+IH RWAML + F +L
Sbjct: 60 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 118
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 119 GVKFGEAVWFKAGSLIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 177
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 178 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 233
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HL+DP ++N
Sbjct: 234 GPLENLADHLSDPVNSN 250
>gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 222
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 108/196 (55%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL+G PGD+G+DP L + PE+ +Y+ ELIH RWAML +KF
Sbjct: 24 PDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 83
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + G Y G +P L + E + + E+ R + D
Sbjct: 84 GPEAV----WFKTGALL-LDGNTLNYFGNSIPI-NLIVAVAAEVVLVGGAEYYRIINGLD 137
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG + DP + KVKEIKNGRLA+ + +GF + Q+ G GP+ENL
Sbjct: 138 LEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFI-QAYVTGEGPVENL 196
Query: 228 ATHLADPWHNNIGDVI 243
+ HL+DP+ NN+ VI
Sbjct: 197 SKHLSDPFGNNLLTVI 212
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 64 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 122
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRIAGGP 181
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 182 LGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 237
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HL+DP +NN
Sbjct: 238 GPLENLADHLSDPVNNN 254
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 104/194 (53%), Gaps = 10/194 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 76 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 134
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG+P V ++ I + + + +E R
Sbjct: 135 GVKFGEAVWFKAGAQIFSEGG-LDYLGSPNLVHAQSILAIWACQVILMGAIEGYRVAGGP 193
Query: 167 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
+ YPGG FDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GPL
Sbjct: 194 LGEVTDPIYPGGNFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPL 252
Query: 225 ENLATHLADPWHNN 238
ENLA HLADP +NN
Sbjct: 253 ENLADHLADPVNNN 266
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 105/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 59 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 117
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + L + VE R
Sbjct: 118 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWATQVLLMGAVEGYRIAGGP 176
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 177 LGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 232
Query: 222 GPLENLATHLADPWHNN 238
GP+ENLA HLADP NN
Sbjct: 233 GPIENLADHLADPVTNN 249
>gi|359806053|ref|NP_001241179.1| uncharacterized protein LOC100815789 [Glycine max]
gi|255638947|gb|ACU19775.1| unknown [Glycine max]
Length = 265
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 103/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E E+IH RWAML + F IL
Sbjct: 63 EQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I ++ + + FVE R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPL 181
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---IYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 223 PLENLATHLADPWHNN 238
P++NL H+ADP NN
Sbjct: 238 PIQNLYDHVADPVANN 253
>gi|224284929|gb|ACN40194.1| unknown [Picea sitchensis]
Length = 274
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/268 (36%), Positives = 128/268 (47%), Gaps = 41/268 (15%)
Query: 6 LMSCGIATTAFPS-VLSSSKSKFFTAVSLPAAAN----------ATSKYAMSADWMP--- 51
+ SCGI + AF +SS K V + A + +T K + SA P
Sbjct: 1 MASCGIGSCAFAGGQISSLKPHNNQLVGVGAGVHGEARVTMRKSSTKKVSASASTSPWYG 60
Query: 52 -----------GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVV 100
GEP P +L G PGD+G+D L PE + +E E+IH RWAML +
Sbjct: 61 PDRVLYLGPFSGEP-PSHLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 119
Query: 101 SSKFFWILVPEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIA 156
F +L + G W +A GG YLG P V ++ I + + +
Sbjct: 120 GCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMG 178
Query: 157 FVEHQRSME------KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVG 210
VE R DP YPGG+FDPLG + DP F E KVKE+KNGRLA+ + G
Sbjct: 179 AVEGYRIAGGPLGEITDP---IYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFG 235
Query: 211 FCVQQSAYPGTGPLENLATHLADPWHNN 238
F V Q+ G GP+ENLA HLADP +NN
Sbjct: 236 FFV-QAIVTGKGPIENLADHLADPVNNN 262
>gi|149391069|gb|ABR25552.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 201
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 108/196 (55%), Gaps = 15/196 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL+G PGD+G+DP L + PE+ +Y+ ELIH RWAML +KF
Sbjct: 3 PEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 62
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + G Y G +P L + E + + E+ R + D
Sbjct: 63 GPEAV----WFKTGALL-LDGNTLNYFGNSIPI-NLIVAVAAEVVLVGGAEYYRIINGLD 116
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E K +PGG FDPLG + DP + KVKEIKNGRLA+ + +GF + Q+ G GP+ENL
Sbjct: 117 LEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFI-QAYVTGEGPVENL 175
Query: 228 ATHLADPWHNNIGDVI 243
+ HL+DP+ NN+ VI
Sbjct: 176 SKHLSDPFGNNLLTVI 191
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 103/193 (53%), Gaps = 16/193 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 69 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 127
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 128 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 187 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 242
Query: 222 GPLENLATHLADP 234
GP+ENLA HLADP
Sbjct: 243 GPIENLADHLADP 255
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 104/195 (53%), Gaps = 13/195 (6%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL+G PGD+G+DP LG+ PE+ +Y+ ELIH RWAML ++PEAL
Sbjct: 88 PEYLNGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLGAAG-----FIIPEALNK 142
Query: 116 --GNWVQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDP 168
N W + G Y G +P + ++ L ++ + +
Sbjct: 143 FGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLILAVVAEVVLVGGAEYYRITNGLEF 202
Query: 169 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
+ K +PGG FDPLG + DP + KVKEIKNGRLA+ + +GF + Q+ G GP ENL
Sbjct: 203 DDKLHPGGPFDPLGLATDPDQAALLKVKEIKNGRLAMFSMLGFFI-QAYVTGEGPFENLC 261
Query: 229 THLADPWHNNIGDVI 243
HL+DP+ NN+ VI
Sbjct: 262 AHLSDPFGNNLLTVI 276
>gi|126362926|gb|ABO10493.1| light-harvesting chlorophyll a/b binding protein [Bambusa oldhamii]
Length = 263
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 102/193 (52%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E +IH RWAML + F IL
Sbjct: 61 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELGVIHSRWAMLGALGCVFPEILSKNG 120
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P V ++ I + + + FVE R
Sbjct: 121 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRIGGGPL 179
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 180 GEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 238
Query: 226 NLATHLADPWHNN 238
NL H+ADP +NN
Sbjct: 239 NLFDHVADPVNNN 251
>gi|87313177|gb|ABD37885.1| light-harvesting chlorophyll-a/b binding protein LhcbM1 [Mesostigma
viride]
gi|87313179|gb|ABD37886.1| light-harvesting chlorophyll-a/b binding protein LhcbM2 [Mesostigma
viride]
gi|145079623|tpg|DAA05921.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Mesostigma viride]
Length = 267
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 102/196 (52%), Gaps = 20/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D + L PE Y+E EL+H RWAML + +PEAL
Sbjct: 61 PSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWAMLGTLGC-----FLPEALEK 115
Query: 114 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
G W +A GG YLG P V ++ + I+ L + VE R
Sbjct: 116 YSGINFGESVWFKAGGQIFQEGG-LDYLGNPSLVHAQSIIATVFIQALLMGLVEGYRVGG 174
Query: 166 K---DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
+ K YPGG+FDPLG DP E KVKEIKNGRLA+ + G+ + Q+ G G
Sbjct: 175 GPLGEAGDKMYPGGSFDPLGLGDDPDTLAELKVKEIKNGRLAMFSMFGYFI-QAIVTGKG 233
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP+ NN
Sbjct: 234 PVENLDAHLADPFVNN 249
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IH RWAML + F +L +
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME------ 165
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGGPLGEI 186
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 187 TDP---LYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 242
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|297844880|ref|XP_002890321.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
gi|297336163|gb|EFH66580.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 111/210 (52%), Gaps = 33/210 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P +LDGS PGDFGFDPL LG P+ L+ + ++ELIH RWAMLAV IL
Sbjct: 67 WFPGSAPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG-----IL 121
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
+PE L +++ W G Y T+ V + + + + E +R
Sbjct: 122 IPECLERLGFIENFSW--YEAGSREYFADST------TLFVAQMVLMGWAEGRRWADLIK 173
Query: 163 --SMEKDPEKKK---------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFV 209
S++ +P+ YPGG FD + + + P+ + KEIKNGRLA+LAFV
Sbjct: 174 PGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFV 233
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GFC Q+ Y P+ENL HLADP H N+
Sbjct: 234 GFCF-QATYTSQDPIENLMAHLADPGHCNV 262
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 103/193 (53%), Gaps = 16/193 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 69 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 127
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 128 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 187 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 242
Query: 222 GPLENLATHLADP 234
GP+ENLA HLADP
Sbjct: 243 GPIENLADHLADP 255
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 120
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME-- 165
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 179
Query: 166 ----KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 180 LGEITDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 235
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 236 GPLENLADHLADPVNNN 252
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 101/193 (52%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E E+IH RWAML + F IL
Sbjct: 60 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNG 119
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P V ++ I + + + FVE R
Sbjct: 120 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPL 178
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFDPLG + DP E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 179 GEGLDKVYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 237
Query: 226 NLATHLADPWHNN 238
NL H+ADP NN
Sbjct: 238 NLFDHVADPVANN 250
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 103/193 (53%), Gaps = 16/193 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 66 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 124
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 125 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 183
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 184 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 239
Query: 222 GPLENLATHLADP 234
GP+ENLA HLADP
Sbjct: 240 GPIENLADHLADP 252
>gi|87313181|gb|ABD37887.1| light-harvesting chlorophyll-a/b binding protein LhcbM3 [Mesostigma
viride]
gi|87313183|gb|ABD37888.1| light-harvesting chlorophyll-a/b binding protein LhcbM5 [Mesostigma
viride]
gi|87313185|gb|ABD37889.1| light-harvesting chlorophyll-a/b binding protein LhcbM4 [Mesostigma
viride]
gi|145079700|tpg|DAA05924.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Mesostigma viride]
gi|145079723|tpg|DAA05925.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Mesostigma viride]
gi|145079757|tpg|DAA05931.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Mesostigma viride]
Length = 267
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 102/196 (52%), Gaps = 20/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D + L PE Y+E EL+H RWAML + +PEAL
Sbjct: 61 PSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWAMLGTLGC-----FLPEALEK 115
Query: 114 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
G W +A GG YLG P V ++ + I+ L + VE R
Sbjct: 116 YSGINFGESVWFKAGGQIFQEGG-LDYLGNPSLVHAQSIIATVFIQALLMGLVEGYRVGG 174
Query: 166 K---DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
+ K YPGG+FDPLG DP E KVKEIKNGRLA+ + G+ + Q+ G G
Sbjct: 175 GPLGEAGDKMYPGGSFDPLGLGDDPDTLAELKVKEIKNGRLAMFSMFGYFI-QAIVTGKG 233
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP+ NN
Sbjct: 234 PVENLDAHLADPFVNN 249
>gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza sativa Indica Group]
Length = 265
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 106/199 (53%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G GD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 61 LSGEP-PSYLTGEFSGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWGCQVVFMGAVEGYRVAG 178
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+ DPLG + DP+ F E KVKEIKNGRLA+L+ GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGSLDPLGLADDPEAFAELKVKEIKNGRLAMLSMFGFFV-QAIVT 234
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLEN+ HLADP +NN
Sbjct: 235 GKGPLENITDHLADPVNNN 253
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 105/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 120
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 179
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 180 LGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 235
Query: 222 GPLENLATHLADPWHNN 238
GP+ENLA HLADP NN
Sbjct: 236 GPIENLADHLADPVTNN 252
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 102/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F IL
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VKFGESVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPL 181
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---IYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP NN
Sbjct: 238 PVENLLDHLADPVANN 253
>gi|357157898|ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Brachypodium distachyon]
Length = 318
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 111/205 (54%), Gaps = 27/205 (13%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P +L G PGD+GFD LG P Y E++HCRWAMLA + +++PE L L
Sbjct: 115 PEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALG-----VVIPELLDL 169
Query: 116 GNWVQAQE-------WAAVPGGQATYLGTP---VPWGT-LPTILVIEFLSIAFVEHQRSM 164
V E +A + G YLG + G + I + + L + E+ R
Sbjct: 170 FGIVHFVEPVWWKVGYAKLQGDTLDYLGITGLRIAGGQGVIVIAICQALLMVGPEYARYC 229
Query: 165 EKD---------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
+ P YPGGA FDPLG SKDP FEE KVKEIKNGRLA++A++GF +
Sbjct: 230 GIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVGFEELKVKEIKNGRLAMVAWLGFYL- 288
Query: 215 QSAYPGTGPLENLATHLADPWHNNI 239
Q+A G GP++NL HL+DP HNNI
Sbjct: 289 QAAVTGKGPVQNLVEHLSDPLHNNI 313
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 107/202 (52%), Gaps = 26/202 (12%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE R +E E+IH RWAML + I+ PE
Sbjct: 61 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALG-----IVFPE 114
Query: 112 AL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR 162
L G W +A GG YLG P + ++ I + + + VE R
Sbjct: 115 PLSRNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYR 173
Query: 163 ------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQS 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 174 IAGGPLGEVTDP---TYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSVFGFFV-QA 229
Query: 217 AYPGTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 230 IVTGKGPLENLADHLADPVNNN 251
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 105/193 (54%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IH RWAML + F +L +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 125
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I ++ + + VE R
Sbjct: 126 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEV 184
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPL+
Sbjct: 185 VDP---LYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLK 240
Query: 226 NLATHLADPWHNN 238
NLA H+ADP +NN
Sbjct: 241 NLADHIADPVNNN 253
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 105/196 (53%), Gaps = 14/196 (7%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 112 ALGLGNWVQAQEWAAV-PGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G V + A + G YLG V ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGAQIFSDGGLDYLGNSSLVHAQSILAIWATQVVLMGAVEGYRIAGGPL 181
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 182 GEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 223 PLENLATHLADPWHNN 238
PLENLA LADP +NN
Sbjct: 238 PLENLADPLADPVNNN 253
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 75 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLARN 133
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I ++ + + VE R
Sbjct: 134 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 192
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPG +FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 193 LGEITDP---LYPGNSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 248
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 249 GPLENLADHLADPVNNN 265
>gi|87313221|gb|ABD37907.1| light-harvesting chlorophyll-a/b binding protein Lhca5
[Chlamydomonas incerta]
Length = 257
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 112/222 (50%), Gaps = 39/222 (17%)
Query: 35 AAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRW 94
A + SK + W+PG P +L G PGDFGFDPL LG E+L+ +KESEL+HCRW
Sbjct: 18 ARRSVVSKASSRPLWLPGSTPPAHLKGELPGDFGFDPLGLGANAESLKWFKESELVHCRW 77
Query: 95 AMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLS 154
AM AV I+ P+ W A + P G P G +L +EF
Sbjct: 78 AMAAVAGILVQEIVRPDVF----WYNAGKEVESPLG---------PLG----LLAVEFFL 120
Query: 155 IAFVEHQR--------SMEKDP---------EKKKYPGGAFDPLGFSKDPQKFEEYKVKE 197
+ +VE +R S+++DP + YPGG F P P E KVKE
Sbjct: 121 MHWVELRRWQDLRKPGSVDQDPIFSQYKLPAHEVGYPGGVFAPF----IPGDLAELKVKE 176
Query: 198 IKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
IKNGRLA+LAFVGF V + G GP+ L HLADP+ I
Sbjct: 177 IKNGRLAMLAFVGF-VMAAQVTGKGPIAALQEHLADPFGTTI 217
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 109/207 (52%), Gaps = 22/207 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL G PGD+G+D LG P L+RY+E+ELIH RWAML V ++FF +
Sbjct: 486 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 545
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
E + W +A G Y G P + +L IL + L + VE R+
Sbjct: 546 FGEPI----WFKAGAQIFSAEG-LNYFGQPALIHAKSLLAILATQVLLMGAVEAYRAGNT 600
Query: 167 DPEK------KKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
P + + YPGG FDPLG + DP F E KVKEIKNGRLA++A +GF Q+ G
Sbjct: 601 APGQFGEDLDRLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMMAMLGFYA-QAIVTG 659
Query: 221 TGPLENLATHLADP-WHNNIGDVIIPR 246
GP+EN HL DP HN + ++ +
Sbjct: 660 EGPVENWLYHLQDPSAHNGLTAALVTQ 686
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 109/207 (52%), Gaps = 22/207 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL G PGD+G+D LG P L+RY+E+ELIH RWAML V ++FF +
Sbjct: 2 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 61
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
E + W +A G Y G P + +L IL + L + VE R+
Sbjct: 62 FGEPI----WFKAGAQIFSAEG-LNYFGQPALIHAKSLLAILATQVLLMGAVEAYRAGNT 116
Query: 167 DPEK------KKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
P + + YPGG FDPLG + DP F E KVKEIKNGRLA++A +GF Q+ G
Sbjct: 117 APGQFGEDLDRLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMVAMLGFYA-QAIVTG 175
Query: 221 TGPLENLATHLADP-WHNNIGDVIIPR 246
GP+EN HL DP HN + ++ +
Sbjct: 176 EGPVENWLYHLQDPSAHNGLTAALVTQ 202
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 106/198 (53%), Gaps = 22/198 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
PPYL+G PGD+G+D LG P L+RY+E+ELIH RWAML + S+ F I
Sbjct: 243 PPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLGALGVVFPEYLSRNFDIP 302
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRS--- 163
+ E + W +A GG YLG V ++ IL + L + E R+
Sbjct: 303 IAEPV----WFKAGAQIFSEGG-LDYLGDARLVHAQSILLILGTQVLLMGAAEAYRTGNG 357
Query: 164 ---MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
KD + YPGG FDPLG + DP E KVKEIKNGRLA+ A GF V Q+ G
Sbjct: 358 LGNFGKDLD-SLYPGGPFDPLGLANDPDTLAELKVKEIKNGRLAMFAMFGFYV-QAIVTG 415
Query: 221 TGPLENLATHLADPWHNN 238
PLENL+ HLA P+ N
Sbjct: 416 ESPLENLSAHLASPFTVN 433
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 103/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IH RWAML + F +L +
Sbjct: 70 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 129
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 130 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 188
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 189 VDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 244
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 245 NLADHLADPVNNN 257
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 103/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + E E+IH RWAML + F IL
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNGELEVIHSRWAMLGALGCVFPEILSKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P V ++ I ++ + + FVE R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPL 181
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMTSMFGFFV-QAIVTGKG 237
Query: 223 PLENLATHLADPWHNN 238
P+ENL H+ADP NN
Sbjct: 238 PVENLYDHVADPVANN 253
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 60 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 118
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 119 GVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP 177
Query: 167 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 178 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 233
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA H+ADP +NN
Sbjct: 234 GPLENLADHIADPVNNN 250
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 105/193 (54%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IH RWAML + F +L +
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 124
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ +I + + + VE R
Sbjct: 125 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEI 183
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP++ E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 184 VDP---LYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 239
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 240 NLADHLADPVNNN 252
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 105/199 (52%), Gaps = 15/199 (7%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ G P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 61 LSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 120
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P + ++ I ++ + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 179
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGGAFDPLG + DP+ E KVK+IKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEVVDP---LYPGGAFDPLGLADDPEACAELKVKKIKNGRLAMFSMFGFFV-QAIVT 235
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 236 GKGPLENLADHLADPVNNN 254
>gi|218202214|gb|EEC84641.1| hypothetical protein OsI_31519 [Oryza sativa Indica Group]
Length = 264
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 111/210 (52%), Gaps = 33/210 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG PP+LDGS PGDFGFDPL LG PE L + ++EL+H RWAMLA IL
Sbjct: 62 WFPGSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAAAG-----IL 116
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME--- 165
VPE L W ++++ + G Y P T+ V + + + E +R +
Sbjct: 117 VPEV--LEKWGFMEDYSWIDAGARDYFADPW------TLFVSQMALMGWAEGRRWADYLN 168
Query: 166 --------KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFV 209
+ P ++ YPGG FD + + P+ + KEIKNGRLA+LAFV
Sbjct: 169 PGCVAVEPRLPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNGRLAMLAFV 228
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GF Q+ Y G GP++NL HLADP H N+
Sbjct: 229 GFWF-QAVYTGEGPIDNLLHHLADPGHCNV 257
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 106/199 (53%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P + ++ I + + + +E R
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAG 178
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG FDPLG + DP+ F + KVKE+KNGRLA+ + GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFV-QAIVT 234
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IH RWAML + F +L +
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 126
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 127 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 185
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 186 VDP---LYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 241
Query: 226 NLATHLADPWHNN 238
NLA HL+DP +NN
Sbjct: 242 NLADHLSDPVNNN 254
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 103/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IH RWAML + F +L +
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 123
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME------ 165
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 124 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEI 182
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 183 TDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 238
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 239 NLADHLADPVNNN 251
>gi|115818|sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor
gi|218019|dbj|BAA00449.1| light harvesting a/b binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 104/194 (53%), Gaps = 10/194 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 76 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 134
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG+P + ++ I + + + +E R
Sbjct: 135 GVKFGEAVWFKAGAQIFSEGG-LDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGP 193
Query: 167 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
+ YPGG FDPLG + DP F + KVKEIKNGRLA+ + GF V Q+ G GP+
Sbjct: 194 LGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPI 252
Query: 225 ENLATHLADPWHNN 238
ENLA HLADP +NN
Sbjct: 253 ENLADHLADPVNNN 266
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 104/193 (53%), Gaps = 8/193 (4%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 76 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 134
Query: 112 ALGLGNWVQAQEWAAV-PGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G V + A + G YLG+P V ++ I + + + +E R
Sbjct: 135 GVKFGEAVWFKAGAQIFSEGWLDYLGSPNLVHAQSILAIWACQVILMGAIEGYRVAGGPL 194
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ YPGG FDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 195 GEVTDPIYPGGNFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 253
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 254 NLADHLADPVNNN 266
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 103/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IH RWAML + F +L +
Sbjct: 69 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 128
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 129 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 187
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 188 VDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 243
Query: 226 NLATHLADPWHNN 238
NLA HL+DP +NN
Sbjct: 244 NLADHLSDPVNNN 256
>gi|297815030|ref|XP_002875398.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321236|gb|EFH51657.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 104/196 (53%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F IL
Sbjct: 64 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 123
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG+P + ++ I + + + F+E R
Sbjct: 124 VKFGEAVWFKAGSQIFSEGG-LDYLGSPNLIHAQSILAIWACQVVLMGFIEGYRIGGGPL 182
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPL ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 238
Query: 223 PLENLATHLADPWHNN 238
P+ENL H+ADP NN
Sbjct: 239 PIENLFDHIADPVANN 254
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 120
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 179
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 180 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 235
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HL+DP +NN
Sbjct: 236 GPLENLADHLSDPVNNN 252
>gi|145079374|tpg|DAA05912.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Acetabularia acetabulum]
Length = 229
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 117/230 (50%), Gaps = 29/230 (12%)
Query: 13 TTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPL 72
TA P V+++ A K + W PG P +LD + PGD+GFDPL
Sbjct: 9 VTARPCVVTNKPRNIVGGRRATQKICAEWKDVRESMWYPGATPPAHLDSTMPGDYGFDPL 68
Query: 73 RLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGN-WVQAQEWAAVPGGQ 131
RLG E L Y+E+EL + RWAM+AV IL +A GL W+ E A+
Sbjct: 69 RLGTNTELLPWYREAELTNGRWAMMAVAG-----ILFTDAFGLPKFWLAGAEKYAI---- 119
Query: 132 ATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-KDPEKKKYPG-GAFDPLGFSKDPQK 189
G P ++ IE +A +E+QR K+ K + FDPL + D
Sbjct: 120 ----------GFAP-LVAIEIALMAVLEYQRFKGWKETGKSGFLAFFPFDPLNMASDEMA 168
Query: 190 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
F KEIKNGRLA++AF+GFC Q+A G GP+E L H+ADPW+NNI
Sbjct: 169 F-----KEIKNGRLAMIAFLGFC-SQAAVRGMGPIECLKMHIADPWNNNI 212
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IH RWAML + F +L +
Sbjct: 30 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 89
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 90 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 148
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 149 VDP---LYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 204
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 205 NLADHLADPVNNN 217
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 106/199 (53%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ G P P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 98 LSGAP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 156
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P + ++ I + + + +E R
Sbjct: 157 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAG 215
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 216 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVT 271
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 272 GKGPLENLADHLADPVNNN 290
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 102/193 (52%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E E+IH RWAML + F IL
Sbjct: 61 EQTPSYLTGKFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCFFPEILSKNG 120
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P V ++ I ++ + + FVE R
Sbjct: 121 VNFGEAVWFKAGAQIFSEGG-LDYLGNPALVRPQSILAIWAVQVVLMGFVEGYRVGGGPL 179
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFD LG ++DP F E+KVKE NGRLA+ + +GF V Q+ G GP+E
Sbjct: 180 GEGLDKVYPGGAFDHLGLAEDPDTFAEFKVKEFNNGRLAMFSMLGFFV-QAIVTGKGPIE 238
Query: 226 NLATHLADPWHNN 238
N H+ADP NN
Sbjct: 239 NFFDHVADPVANN 251
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 120
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 179
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 180 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 235
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HL+DP +NN
Sbjct: 236 GPLENLADHLSDPVNNN 252
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 103/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IH RWAML + F +L +
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 126
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 127 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 185
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 186 VDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 241
Query: 226 NLATHLADPWHNN 238
NLA HL+DP +NN
Sbjct: 242 NLADHLSDPVNNN 254
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 102/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E E+IH RWAML + F +L
Sbjct: 63 EQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VKFGEAVWFKAGSQIFAEGG-LDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPL 181
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---LYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 223 PLENLATHLADPWHNN 238
P++NL H+ADP NN
Sbjct: 238 PIQNLYDHVADPVANN 253
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 102/193 (52%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F IL
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P V ++ I + + + +E R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGPL 181
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 182 GEGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPVE 240
Query: 226 NLATHLADPWHNN 238
NL HLADP NN
Sbjct: 241 NLFDHLADPVANN 253
>gi|386784577|gb|AFJ25031.1| chlorophyll a/b binding protein [Lonicera japonica]
Length = 265
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 101/193 (52%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F IL
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P V ++ I + + + +E R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRIGGGPL 181
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 182 GEGLDSLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPVE 240
Query: 226 NLATHLADPWHNN 238
NL HLADP NN
Sbjct: 241 NLYDHLADPVANN 253
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 102/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VKFGESVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPL 181
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---IYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 223 PLENLATHLADPWHNN 238
P+ENL H+ADP NN
Sbjct: 238 PIENLFDHVADPVANN 253
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 103/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IH RWAML + F +L +
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 92
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 93 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 151
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 152 VDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 207
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 208 NLADHLADPVNNN 220
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 103/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IH RWAML + F +L +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 125
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P + ++ I + + + +E R
Sbjct: 126 GEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEV 184
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 105/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 121
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 181 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 236
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HL DP +NN
Sbjct: 237 GPLENLADHLTDPVNNN 253
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 102/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E E+IH RWAML + F +L
Sbjct: 63 EQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VKFGEAVWFKAGSQIFAEGG-LDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPL 181
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---LYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 223 PLENLATHLADPWHNN 238
P++NL H+ADP NN
Sbjct: 238 PIQNLYDHVADPVANN 253
>gi|224137478|ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
gi|222835451|gb|EEE73886.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
Length = 266
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 128/253 (50%), Gaps = 46/253 (18%)
Query: 8 SCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDF 67
S G A T P+ SS++ P +A + W+PG PPYLDG+ GDF
Sbjct: 30 SFGAAETFLPAKPSSTRCT-------PVVVHAQQR----PTWLPGLDPPPYLDGTLAGDF 78
Query: 68 GFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL-VPEALGLGNWVQAQEWAA 126
GFDPL LGE P++L+ Y ++EL+H R+AM V F +L V L W +A
Sbjct: 79 GFDPLGLGEDPQSLKWYVQAELVHARFAMAGVAGILFTDLLRVTGIRKLPVWYEA----- 133
Query: 127 VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-------------------KD 167
G + + + T++V++ L + F E +R M+ +
Sbjct: 134 ---GAVKF-----EFASTRTLIVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLESALE 185
Query: 168 PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
+ YPGG +PLG ++D + +K+KEIKNGRLA++A VG V Q+A GP++N
Sbjct: 186 GLEPGYPGGPLLNPLGLARDIENAHVWKLKEIKNGRLAMVAMVGIFV-QAAVTHAGPIDN 244
Query: 227 LATHLADPWHNNI 239
L HL++PWH I
Sbjct: 245 LIEHLSNPWHRTI 257
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 124/261 (47%), Gaps = 41/261 (15%)
Query: 9 CGIATTAFPS-VLSSSKSKFFTAVSLPAAAN----------ATSKYAMSADWMP------ 51
CGI + AF +SS K + + A + AT K ++SA P
Sbjct: 1 CGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKAATKKVSVSASTSPWYGPDR 60
Query: 52 --------GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSK 103
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML +
Sbjct: 61 VLYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCV 119
Query: 104 FFWILVPEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVE 159
F +L + G W +A GG YLG P V ++ I + + + VE
Sbjct: 120 FPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVE 178
Query: 160 HQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 213
R DP YPGG+FDPL + DP F E KVKEIKNGRLA+ + GF V
Sbjct: 179 GYRIAGGPLGEVTDP---IYPGGSFDPLRLADDPDAFAELKVKEIKNGRLAMFSMFGFFV 235
Query: 214 QQSAYPGTGPLENLATHLADP 234
Q+ G GP+ENLA HLADP
Sbjct: 236 -QAIVTGKGPIENLADHLADP 255
>gi|357121229|ref|XP_003562323.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Brachypodium distachyon]
Length = 263
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 102/193 (52%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F IL
Sbjct: 61 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 120
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P V ++ I + + + F+E R
Sbjct: 121 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFIEGYRVGGGPL 179
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFDPLG + DP E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 180 GEGLDKIYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPVE 238
Query: 226 NLATHLADPWHNN 238
NL H+ADP +NN
Sbjct: 239 NLFDHVADPVNNN 251
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 109/207 (52%), Gaps = 22/207 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL G PGD+G+D LG P L+RY+E+ELIH RWAML V ++FF +
Sbjct: 259 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 318
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
E + W +A G Y G P + +L IL + L + VE R+
Sbjct: 319 FGEPI----WFKAGAQIFSAEG-LNYFGQPALIHAKSLLAILATQVLLMGAVEAYRAGNT 373
Query: 167 DPEK------KKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
P + + YPGG FDPLG + DP F E KVKEIKNGRLA++A +GF Q+ G
Sbjct: 374 APGQFGEDLDRLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMVAMLGFYA-QAIVTG 432
Query: 221 TGPLENLATHLADP-WHNNIGDVIIPR 246
GP+EN HL DP HN + ++ +
Sbjct: 433 EGPVENWLYHLQDPSAHNGLTAALVTQ 459
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 106/198 (53%), Gaps = 22/198 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
PPYL+G PGD+G+D LG P L+RY+E+ELIH RWAML + S+ F I
Sbjct: 16 PPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLGALGVVFPEYLSRNFDIP 75
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRS--- 163
+ E + W +A GG YLG V ++ IL + L + E R+
Sbjct: 76 IAEPV----WFKAGAQIFSEGG-LDYLGDARLVHAQSILLILGTQVLLMGAAEAYRTGNG 130
Query: 164 ---MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
KD + YPGG FDPLG + DP E KVKEIKNGRLA+ A GF V Q+ G
Sbjct: 131 LGNFGKDLD-SLYPGGPFDPLGLANDPDTLAELKVKEIKNGRLAMFAMFGFYV-QAIVTG 188
Query: 221 TGPLENLATHLADPWHNN 238
PLENL+ HLA P+ N
Sbjct: 189 ESPLENLSAHLASPFTVN 206
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 102/197 (51%), Gaps = 20/197 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D L PE RY+E E+IH RWAML + L PE L
Sbjct: 49 PSYLKGEFPGDYGWDSAGLSADPETFARYREIEVIHARWAMLGALG-----CLTPELLQN 103
Query: 114 -GLGNWVQAQEW-----AAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
G ++ +A W + YLG P + ++ +L+ + + + E R
Sbjct: 104 NGAADFGEAAVWFKAGASIFSDDGLNYLGNPSLIHAQSIVAVLLTQLVIMGAAEAYRYAG 163
Query: 166 KDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
+ P + YPGGAFDPLG + DP E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 164 EGPVETSGDSLYPGGAFDPLGLADDPDTLAELKVKELKNGRLAMFSMFGFFV-QALITGK 222
Query: 222 GPLENLATHLADPWHNN 238
PLENLA HLADP N
Sbjct: 223 SPLENLADHLADPSTAN 239
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 103/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F IL
Sbjct: 64 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 123
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + F+E R
Sbjct: 124 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGGGPL 182
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPL ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 238
Query: 223 PLENLATHLADPWHNN 238
P+ENL H+ADP NN
Sbjct: 239 PIENLFDHIADPVANN 254
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 103/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 64 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTG 123
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + +E R
Sbjct: 124 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWAFQVVLMGLIEGYRVGGGPL 182
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 238
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP +NN
Sbjct: 239 PIENLFDHLADPANNN 254
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 105/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAM + F +L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMPGALGCVFPELLSRN 120
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGSQIFQEGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 179
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + P+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 180 LGEVTDP---IYPGGSFDPLGLADVPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 235
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 236 GPLENLADHLADPVNNN 252
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 113/210 (53%), Gaps = 33/210 (15%)
Query: 57 PYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL- 115
P L+G+ PGD+G+DPL L + E L +Y+ +EL+H RWAMLA + ++PE L
Sbjct: 69 PLLNGTLPGDYGYDPLGLAKDAETLSKYQANELLHARWAMLAAAGA-----IIPEGLAAN 123
Query: 116 GNWVQAQEW-----AAVPGGQATYLGTPVPWGTLPT-ILVIEFLSIAFV----EHQRSME 165
G V+ W A + GG + P+ + P + V+ ++A + ++R+ E
Sbjct: 124 GADVKGATWFETGAAMLNGGTLNWFAVPIANISNPLPLFVVVAANVALMGAAENYRRTGE 183
Query: 166 K----------------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFV 209
D YPGG FDPLG + DP+ E KVKEIKNGRLA+++F+
Sbjct: 184 GPAGYSPGVGKFDESAYDSMDSLYPGGPFDPLGLADDPEVLAELKVKEIKNGRLAMVSFL 243
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GF V Q+A G GP N + H+ADP+ N+
Sbjct: 244 GFAV-QAAVTGEGPYANWSKHVADPFGYNL 272
>gi|148514657|gb|ABQ81856.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 106/199 (53%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G GD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 61 LSGEP-PSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 120 RNGVQFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVT 234
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 104/197 (52%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 72 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 130
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME-- 165
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 131 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 189
Query: 166 ----KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 190 LGEITDP---IYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 245
Query: 222 GPLENLATHLADPWHNN 238
GP+ENLA HLADP NN
Sbjct: 246 GPIENLADHLADPVTNN 262
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 104/197 (52%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 73 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 131
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME-- 165
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 132 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 190
Query: 166 ----KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 191 LGEITDP---IYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 246
Query: 222 GPLENLATHLADPWHNN 238
GP+ENLA HLADP NN
Sbjct: 247 GPIENLADHLADPVTNN 263
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 110/205 (53%), Gaps = 33/205 (16%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P +LDGS PGDFGFDPL LG PE L+ ++EL+H RWAML V IL
Sbjct: 65 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSG-----IL 119
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
+PE L +V+ W G Y P T+ +++ + +VE +R
Sbjct: 120 IPEILEKIGYVKNFSWYNA--GSVEYFADPT------TLFIVQLALMGWVEGRRWADIVN 171
Query: 163 --SMEKDPEKKK---------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFV 209
S++ +P+ YPGG FDP+ + + P+ + KEIKNGRLA+LAF+
Sbjct: 172 PGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAMLAFL 231
Query: 210 GFCVQQSAYPGTGPLENLATHLADP 234
GFC Q+ Y G P++NL HLADP
Sbjct: 232 GFCF-QAVYVGGSPIDNLMAHLADP 255
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 102/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E E+IH RWAML + F IL
Sbjct: 63 EQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPL 181
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---LYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 223 PLENLATHLADPWHNN 238
P++NL H+ADP NN
Sbjct: 238 PVQNLYDHVADPVANN 253
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 102/193 (52%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G GD+G+D L PE + +E E+IH RWAML + F +L +
Sbjct: 67 PSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVFPELLARNGVKF 126
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWATQVVLMGAVEGYRVAGGPLGEV 185
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 186 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 241
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 242 NLADHLADPVNNN 254
>gi|159479992|ref|XP_001698070.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714517|dbj|BAD06922.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158273869|gb|EDO99655.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 117/245 (47%), Gaps = 52/245 (21%)
Query: 12 ATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDP 71
A A PS S+ +S A S P W+PG P +L G PGDFGFDP
Sbjct: 8 AVAARPSARSARRSVVAKASSRPL-------------WLPGSTPPAHLKGDLPGDFGFDP 54
Query: 72 LRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQ 131
L LG E+L+ +KESEL+H RWAM AV I+ P+ W A + P G
Sbjct: 55 LGLGANAESLKWFKESELVHSRWAMAAVAGILVQEIVRPDVF----WYNAGKEVESPLG- 109
Query: 132 ATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD---------PEKKKYP 174
P G +L +EF + +VE +R S+++D P + YP
Sbjct: 110 --------PLG----LLAVEFFLMHWVEVRRWQDLRKPGSVDQDPIFSQYKLPPHEVGYP 157
Query: 175 GGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADP 234
GG F P P E KVKEIKNGRLA+LAFVGF V + G GP+ L HLADP
Sbjct: 158 GGVFAPF----IPGDLAELKVKEIKNGRLAMLAFVGF-VMAAQVTGKGPIAALQEHLADP 212
Query: 235 WHNNI 239
W I
Sbjct: 213 WGTTI 217
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 265
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 101/196 (51%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F IL
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VKFGESVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPL 181
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP F E KVKE+KNGRLA + GF V Q+ G G
Sbjct: 182 GEGLDP---IYPGGAFDPLGLADDPDAFAELKVKELKNGRLATFSMFGFFV-QAIVTGKG 237
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP NN
Sbjct: 238 PVENLLDHLADPVANN 253
>gi|358346846|ref|XP_003637475.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503410|gb|AES84613.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 294
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 124/273 (45%), Gaps = 64/273 (23%)
Query: 24 KSKFFTAVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRL---- 74
K K + ++ P +T+ +A+ W PG PP+LDGS PGDFGFDPL L
Sbjct: 36 KLKVNSNIAAPVRVRSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLYNGG 95
Query: 75 ----------------------GEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
PE+L+ ++EL+HCRWAML I +PE
Sbjct: 96 LIILAGNTNDHNINQSFGCDSTASDPESLKWNVQAELVHCRWAMLGAAG-----IFIPEF 150
Query: 113 LGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SM 164
L + W G Q + T T+ ++E + I + E +R +
Sbjct: 151 LTKIGILNTPSWYTA-GEQEYFTDTT-------TLFIVELIFIGWAEGRRWADILNPGCV 202
Query: 165 EKDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCV 213
DP YPGG FDPLG+ S PQK +E + KEIKNGRLA+LA +G
Sbjct: 203 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWF 262
Query: 214 QQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 246
Q Y GTGP++NL HLADP H I P+
Sbjct: 263 QH-IYTGTGPIDNLFAHLADPGHATIFAAFTPK 294
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 102/192 (53%), Gaps = 17/192 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL+G PGD+G+D L PE RY+E E+IH RWAML + I+VPE L
Sbjct: 82 PSYLNGEFPGDYGWDTAGLSADPETFSRYREIEVIHARWAMLGALG-----IVVPELLDQ 136
Query: 116 GN---WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPE- 169
N W A P G YLG P + + + ++ + + +E R + P
Sbjct: 137 TNHVAWFDAGATIFGPKG-IQYLGVPGLINAKNIIATVAVQVILMGAIEGYR-VNGGPAG 194
Query: 170 ---KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
K YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+ N
Sbjct: 195 EGLDKVYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSNFGFFV-QAIVTGKGPIAN 253
Query: 227 LATHLADPWHNN 238
L HLA+P NN
Sbjct: 254 LNDHLANPTVNN 265
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 102/193 (52%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE R +E E+IH RWAML + F IL +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGIVFPEILEKNGVKF 125
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 165
G W +A GG YLG P + ++ I ++ + + FVE R
Sbjct: 126 GEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEG 184
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP++
Sbjct: 185 LDP---IYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSVFGFFV-QAIVTGKGPIQ 240
Query: 226 NLATHLADPWHNN 238
NL H+ADP NN
Sbjct: 241 NLYDHVADPVANN 253
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 103/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IH RWAML + F +L +
Sbjct: 64 PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGIKF 123
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 165
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 124 GEAVWFKAGSQIFKEGG-LDYLGNPSLVHAQSILAIWASQVILMGAVEGYRIAGGPLGEV 182
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 183 TDP---IYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 238
Query: 226 NLATHLADPWHNN 238
NL+ HLADP NN
Sbjct: 239 NLSDHLADPVANN 251
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 111/218 (50%), Gaps = 34/218 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG PP+LDGS PGDFGFDPL LG PE+L +++L+HCRWAML I
Sbjct: 62 WFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQADLVHCRWAMLGAAG-----IF 116
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
+PE L + W G+ Y T+ +IE + I + E +R
Sbjct: 117 IPEFLTKIGILNTPSWYTA--GEHQYFTDTT------TLFIIELILIGWAEGRRWADIII 168
Query: 163 ---SMEKDP---------EKKKYPGGAF-DPLGF-SKDPQKFEEYKVKEIKNGRLALLAF 208
+ DP ++ P G + DPLG+ + P+K +E + KEIKNGR+A+LA
Sbjct: 169 NPGCVNTDPIFPQQQVHGHRRGEPCGLWLDPLGWGTVSPEKIKELRTKEIKNGRVAMLAV 228
Query: 209 VGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 246
+G Q+ + GTGP++N H+ADP H I P+
Sbjct: 229 MGAWF-QAEHTGTGPIDNFFAHVADPGHATIFQAFTPK 265
>gi|308800788|ref|XP_003075175.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029283|gb|AAY27540.1| chloroplast light-harvesting complex I protein precursor Lhca4
[Ostreococcus tauri]
gi|116061729|emb|CAL52447.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 236
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 104/208 (50%), Gaps = 32/208 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P +L G PGD+GFDPL LG+ P++LE Y ++EL H RWAML V +
Sbjct: 36 WFPGMDAPQHLKGELPGDYGFDPLNLGKEPKDLEWYVQAELQHGRWAMLGVAGAA----- 90
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
PE L W P Q + T+ ++ L + + E +R
Sbjct: 91 APEILTKMGISDLPNWHDAPNYQGYFTDA-------TTLFWVQMLMMNWAEVRRWQDMRK 143
Query: 163 --SMEKDPEKK---------KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGF 211
S+ +DP YPGG FDPLG++K + K KEI NGRLA++AF G
Sbjct: 144 PGSVNEDPAFSGNKLPSGIVGYPGGIFDPLGYAKG--DLNKLKAKEIANGRLAMVAFAGI 201
Query: 212 CVQQSAYPGTGPLENLATHLADPWHNNI 239
VQ + G GP+ NL H++DP HNN+
Sbjct: 202 MVQYD-HTGVGPVANLVAHMSDPAHNNV 228
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 101/190 (53%), Gaps = 9/190 (4%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E ELIH RWAML + +L +
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHARWAMLGALGCVTPELLAKNGVKF 126
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DP 168
G W +A GG YLG P V ++ I + + + VE R +
Sbjct: 127 GEAVWFKAGSQIFAEGG-LDYLGNPSLVHAQSILAIWAFQVVLMGAVEGYRVAGGPLGEV 185
Query: 169 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+ENL+
Sbjct: 186 EDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLS 244
Query: 229 THLADPWHNN 238
HLADP NN
Sbjct: 245 DHLADPTVNN 254
>gi|159467559|ref|XP_001691959.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278686|gb|EDP04449.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 288
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 121/230 (52%), Gaps = 34/230 (14%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77
S+++ ++ F+A P A A + A+ W PG P P +LDGS GD+GFDPL LG+
Sbjct: 4 SMIAQRRAGAFSARQAPRAVRAQA--AVRPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQE 61
Query: 78 PENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGT 137
P+ L+ Y ++EL+H R+AML I LG W A G+
Sbjct: 62 PQTLKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGFPEWYDA--------GKVVVEKN 113
Query: 138 PVPWGTLPTILVIEFLSIAFVEHQRSME-KDPEKKK-----------------YPGGA-F 178
+ PT++VI+F + + E +R + K+P + YPGG F
Sbjct: 114 NI---DFPTLMVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGLENGYPGGRFF 170
Query: 179 DPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
DP+G S+ D K++EYK KE+KNGRLA++A +GF Q +A G GPL+NL
Sbjct: 171 DPMGLSRGDAAKYQEYKQKEVKNGRLAMIACLGFAAQYAA-TGKGPLDNL 219
>gi|87313165|gb|ABD37879.1| light-harvesting chlorophyll-a/b binding protein Lhca2 [Mesostigma
viride]
Length = 242
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 116/224 (51%), Gaps = 37/224 (16%)
Query: 37 ANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIH 91
A A +K+ +SA W PG +LDGS PGDFG+DPL L P+ L+ ++EL +
Sbjct: 25 AKAQAKFVVSASSNRPVWFPGNAPRAWLDGSLPGDFGYDPLGLSSDPQVLKWMVQAELQN 84
Query: 92 CRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIE 151
RWAML V + + +GL VQ E A + W TL LV++
Sbjct: 85 ARWAMLGV--AGMLGADLANKVGLPAAVQWYE--------APLVDYQADWKTL---LVVQ 131
Query: 152 FLSIAFVEHQR--------SMEKDP--------EKKKYPGGAFDPLGFSKDPQKFEEYKV 195
+ A+VE +R S DP YPGG FDPLGFSK E K+
Sbjct: 132 LVLHAWVEGRRWADFHSPGSANADPFGNSLPSTATTGYPGGPFDPLGFSKG--NLPELKL 189
Query: 196 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
KEIKNGRLA++A +G VQ SA G PL+NLA HLADP H NI
Sbjct: 190 KEIKNGRLAMVASLGLFVQYSAT-GASPLDNLAAHLADPGHANI 232
>gi|122831060|gb|ABM66819.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Bambusa oldhamii]
Length = 265
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 106/199 (53%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G GD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 61 LSGEP-PSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVT 234
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 102/193 (52%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IH RWAML + F +L +
Sbjct: 71 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 130
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME------ 165
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 131 GEAVWFKAGSQIFSDGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEI 189
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 190 TDP---IYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 245
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 246 NLADHLADPVNNN 258
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 31 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 89
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 90 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP 148
Query: 167 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 149 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 204
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA H+ADP +NN
Sbjct: 205 GPLENLADHIADPVNNN 221
>gi|146150144|gb|ABQ02463.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 101/193 (52%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G GD+G+D L PE R +E E+IH RWAML + F IL
Sbjct: 61 EQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNG 120
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P V ++ I + + + FVE R
Sbjct: 121 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRVGGGPL 179
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFDPLG + DP F E KVKE+KNG LA+ + GF V Q+ G GP+E
Sbjct: 180 GEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGSLAMFSMFGFFV-QAIVTGKGPIE 238
Query: 226 NLATHLADPWHNN 238
NL H+ADP +NN
Sbjct: 239 NLFDHVADPVNNN 251
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 104/194 (53%), Gaps = 10/194 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 31 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 89
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG+P + ++ I + + + +E R
Sbjct: 90 GVKFGEAVWFKAGAQIFSEGG-LDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGP 148
Query: 167 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
+ YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+
Sbjct: 149 LGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPI 207
Query: 225 ENLATHLADPWHNN 238
ENLA H+ADP +NN
Sbjct: 208 ENLADHIADPVNNN 221
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L P+ + +E E+IH RWAML + F +L
Sbjct: 60 GEP-PSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHSRWAMLGALGCVFPELLSRN 118
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 119 GVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP 177
Query: 167 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 178 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 233
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA H+ADP +NN
Sbjct: 234 GPLENLADHIADPVNNN 250
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 103/200 (51%), Gaps = 26/200 (13%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L P+ RY+E ELIH RWA+L + IL PE L
Sbjct: 51 PEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALG-----ILTPELLSQ 105
Query: 116 GNWVQ----------AQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRS 163
VQ AQ +AA G YLG + ++ L ++ + + E R+
Sbjct: 106 YAGVQFGEPVWFKAGAQIFAA---GGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRA 162
Query: 164 MEK-----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 218
D YPGG FDPLG + DP F E KVKEIKNGRLA+ + +GF V Q+
Sbjct: 163 NGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFV-QAIV 221
Query: 219 PGTGPLENLATHLADPWHNN 238
G GP++NL HLADP NN
Sbjct: 222 TGKGPVQNLTDHLADPTVNN 241
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 103/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IH RWAML + F +L +
Sbjct: 73 PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGIKF 132
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 165
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 133 GEAVWFKAGSQIFKEGG-LDYLGNPSLVHAQSILAIWASQVILMGAVEGYRIAGGPLGEV 191
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 192 TDP---IYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 247
Query: 226 NLATHLADPWHNN 238
NL+ HLADP NN
Sbjct: 248 NLSDHLADPVANN 260
>gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a chlorophyll a/b-binding protein type II
from Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
[Arabidopsis thaliana]
Length = 267
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 112/213 (52%), Gaps = 33/213 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P +LDGS PGDFGFDPL LG P+ L+ + ++ELIH RWAMLAV I+
Sbjct: 68 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG-----II 122
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
+PE L +++ W G Y T+ V + + + + E +R
Sbjct: 123 IPECLERLGFIENFSW--YDAGSREYFADST------TLFVAQMVLMGWAEGRRWADLIK 174
Query: 163 --SMEKDPEKKK---------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFV 209
S++ +P+ YPGG FD + + + P+ + KEIKNGRLA+LAF+
Sbjct: 175 PGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFL 234
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNIGDV 242
GFC Q+ Y P+ENL HLADP H N+ V
Sbjct: 235 GFCF-QATYTSQDPIENLMAHLADPGHCNVFSV 266
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 102/190 (53%), Gaps = 10/190 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 69 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 127
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME-- 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 166 -KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
++ YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+
Sbjct: 187 LREVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPI 245
Query: 225 ENLATHLADP 234
ENLA HLADP
Sbjct: 246 ENLADHLADP 255
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 102/198 (51%), Gaps = 24/198 (12%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL+G PGD+G+D L PE RY+E E+IH RWAML + L PE L
Sbjct: 12 PSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALG-----CLTPELLSQ 66
Query: 116 GNWVQAQE---WAAVPGGQA------TYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSM 164
N QE W A G Q YLG P V ++ L ++ + + E R+
Sbjct: 67 -NGFTFQEPVWWKA--GAQILSSEGLDYLGKPNLVHAQSIVATLAVQVILMGSAEAYRAA 123
Query: 165 EKDPE----KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
P K YPGG FDPL F+ DP E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 124 GSAPGVDGLDKLYPGGPFDPLEFASDPDTLAELKVKEIKNGRLAMFSMFGFFV-QAIVTG 182
Query: 221 TGPLENLATHLADPWHNN 238
GPLENL HLA P+ NN
Sbjct: 183 KGPLENLNDHLASPYANN 200
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 102/193 (52%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G GD+G+D L PE + +E E+IH RWAML + F +L +
Sbjct: 36 PSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVFPELLARNGVKF 95
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 96 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGGPLGEV 154
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 155 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 210
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 211 NLADHLADPVNNN 223
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 102/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 44 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNG 103
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + +E R
Sbjct: 104 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPL 162
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 163 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 218
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP NN
Sbjct: 219 PIENLYDHLADPVANN 234
>gi|145079606|tpg|DAA05920.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Mesostigma viride]
Length = 238
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 116/224 (51%), Gaps = 37/224 (16%)
Query: 37 ANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIH 91
A A +K+ +SA W PG +LDGS PGDFG+DPL L P+ L+ ++EL +
Sbjct: 21 AKAQAKFVVSASSNRPVWFPGNAPRAWLDGSLPGDFGYDPLGLSSDPQVLKWMVQAELQN 80
Query: 92 CRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIE 151
RWAML V + + +GL VQ E A + W TL LV++
Sbjct: 81 ARWAMLGV--AGMLGADLANKVGLPAAVQWYE--------APLVDYQADWKTL---LVVQ 127
Query: 152 FLSIAFVEHQR--------SMEKDP--------EKKKYPGGAFDPLGFSKDPQKFEEYKV 195
+ A+VE +R S DP YPGG FDPLGFSK E K+
Sbjct: 128 LVLHAWVEGRRWADFHSPGSANADPFGNSLPSTATTGYPGGPFDPLGFSKG--NLPELKL 185
Query: 196 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
KEIKNGRLA++A +G VQ SA G PL+NLA HLADP H NI
Sbjct: 186 KEIKNGRLAMVASLGLFVQYSAT-GASPLDNLAAHLADPGHANI 228
>gi|27754356|gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 111/210 (52%), Gaps = 33/210 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P +LDGS PGDFGFDPL LG P+ L+ + ++ELIH RWAMLAV I+
Sbjct: 68 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG-----II 122
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
+PE L +++ W G Y T+ V + + + + E +R
Sbjct: 123 IPECLERLGFIENFSW--YDAGSREYFADST------TLFVAQMVLMGWAEGRRWADLIK 174
Query: 163 --SMEKDPEKKK---------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFV 209
S++ +P+ YPGG FD + + + P+ + KEIKNGRLA+LAF+
Sbjct: 175 PGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFL 234
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GFC Q+ Y P+ENL HLADP H N+
Sbjct: 235 GFCF-QATYTSQDPIENLMAHLADPGHCNV 263
>gi|15221956|ref|NP_173349.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
gi|56381917|gb|AAV85677.1| At1g19150 [Arabidopsis thaliana]
gi|58331805|gb|AAW70400.1| At1g19150 [Arabidopsis thaliana]
gi|332191690|gb|AEE29811.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 270
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 111/210 (52%), Gaps = 33/210 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P +LDGS PGDFGFDPL LG P+ L+ + ++ELIH RWAMLAV I+
Sbjct: 68 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG-----II 122
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
+PE L +++ W G Y T+ V + + + + E +R
Sbjct: 123 IPECLERLGFIENFSW--YDAGSREYFADST------TLFVAQMVLMGWAEGRRWADLIK 174
Query: 163 --SMEKDPEKKK---------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFV 209
S++ +P+ YPGG FD + + + P+ + KEIKNGRLA+LAF+
Sbjct: 175 PGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFL 234
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GFC Q+ Y P+ENL HLADP H N+
Sbjct: 235 GFCF-QATYTSQDPIENLMAHLADPGHCNV 263
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 105/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 66 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 124
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 125 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP 183
Query: 167 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 184 LGEVVDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 239
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HL DP +NN
Sbjct: 240 GPLENLADHLFDPVNNN 256
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 98/190 (51%), Gaps = 9/190 (4%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL+G GD+G+D L PE R +E E+IH RWAML + +L +
Sbjct: 69 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 128
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DP 168
G W +A GG YLG P V ++ I + + + VE R D
Sbjct: 129 GEAVWFKAGAQIFSEGGL-DYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGDV 187
Query: 169 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLENL
Sbjct: 188 TDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLN 246
Query: 229 THLADPWHNN 238
HLADP NN
Sbjct: 247 DHLADPVANN 256
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 107/210 (50%), Gaps = 33/210 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P +LDGS P DFGFDPL LG PE L+ + +SE++H RWAML I
Sbjct: 66 WFPGSTPPAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAG-----IF 120
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
+PEAL + W G+ Y T+ ++E + + + E +R
Sbjct: 121 IPEALTKLGILNTPFWYTA--GEQEYFTDQT------TLFIVEMILLGWAEGRRWADILK 172
Query: 163 --SMEKDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFV 209
S+ DP YPGG FDP G+ + P+K +E + KEIKNGRLA+LA +
Sbjct: 173 PGSVNTDPVFPNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNGRLAMLAVM 232
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
G Q+ Y G P++NL HLADP H I
Sbjct: 233 GAWF-QAVYTGARPIDNLLAHLADPGHATI 261
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 102/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 64 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTG 123
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + +E R
Sbjct: 124 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPL 182
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 238
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP NN
Sbjct: 239 PIENLFDHLADPTANN 254
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 110/224 (49%), Gaps = 37/224 (16%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-G 114
P YL+G GD+G+DPL LG+ E + +Y+E EL+H RWAMLA IL+PE L
Sbjct: 69 PAYLNGELAGDYGYDPLGLGKDTETVAKYREYELLHARWAMLAAAG-----ILIPEGLQA 123
Query: 115 LGNWVQAQEW-----AAVPGGQATYLGTPVPWGTLPT------ILVIEFLSIAFVEHQRS 163
G ++ W + GG Y VPWG + ++ IE + VE R
Sbjct: 124 NGANIKGGVWFETGAEMLNGGTLNYFA--VPWGIVSNPLPLFAVIAIEVGLMGAVEFYRR 181
Query: 164 MEKDPE-----------------KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALL 206
P YPGG FDPLG + DP+ F+E KVKEIKNGRLA++
Sbjct: 182 NGTGPAGYSPGIGKFDSSVFEGLDSIYPGGPFDPLGLADDPEVFQELKVKEIKNGRLAMV 241
Query: 207 AFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP 250
+ + F + QS G GP N H+ DP+ N+ V+ VP
Sbjct: 242 SVLAFAI-QSYVTGEGPYTNWIKHVQDPFGYNLLTVLGNEDRVP 284
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 102/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 64 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTG 123
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + +E R
Sbjct: 124 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPL 182
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 238
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP NN
Sbjct: 239 PIENLFDHLADPTANN 254
>gi|217072028|gb|ACJ84374.1| unknown [Medicago truncatula]
Length = 265
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 101/196 (51%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E E+IH RWAML + F IL
Sbjct: 63 EQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + FVE R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWATRVVLMGFVEGYRVGGGPL 181
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---LYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 223 PLENLATHLADPWHNN 238
P++NL H+ADP NN
Sbjct: 238 PVQNLYDHVADPVANN 253
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 107/210 (50%), Gaps = 33/210 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P +LDGS P DFGFDPL LG PE L+ + +SE++H RWAML I
Sbjct: 66 WFPGSTPPAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAG-----IF 120
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
+PEAL + W G+ Y T+ ++E + + + E +R
Sbjct: 121 IPEALTKLGILNTPFWYTA--GEQEYFTDQT------TLFIVEMILLGWAEGRRWADILK 172
Query: 163 --SMEKDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFV 209
S+ DP YPGG FDP G+ + P+K +E + KEIKNGRLA+LA +
Sbjct: 173 PGSVNTDPVFPNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNGRLAMLAVM 232
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
G Q+ Y G P++NL HLADP H I
Sbjct: 233 GAWF-QAVYTGARPIDNLLAHLADPGHATI 261
>gi|302829360|ref|XP_002946247.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
gi|300269062|gb|EFJ53242.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
Length = 256
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 110/222 (49%), Gaps = 39/222 (17%)
Query: 35 AAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRW 94
A + +K + W+PG P +L G PGDFGFDPL LG P++L+ ++ESEL+H RW
Sbjct: 17 ARRSVVAKASSRPLWLPGSTPPAHLKGELPGDFGFDPLGLGANPDSLKWFRESELVHSRW 76
Query: 95 AMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLS 154
AM AV I+ P+ W A P G P G +L EF
Sbjct: 77 AMAAVAGILVQEIVRPDVF----WYSAGSQVESPLG---------PLG----LLAFEFFC 119
Query: 155 IAFVEHQR--------SMEKD---------PEKKKYPGGAFDPLGFSKDPQKFEEYKVKE 197
+ +VE +R S+++D P + YPGG F P P E KVKE
Sbjct: 120 MHWVELRRWQDLRKPGSVDQDPIFSQYKLPPHEPGYPGGVFAPF----IPGDLAELKVKE 175
Query: 198 IKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
IKNGRLA+LAFVGF V + G GP+ L HLADPW I
Sbjct: 176 IKNGRLAMLAFVGF-VMAAQVTGKGPIAALQEHLADPWGTTI 216
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 103/192 (53%), Gaps = 13/192 (6%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IH RWAML + F +L +
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKF 124
Query: 116 GNWVQAQEWAAV-PGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK------ 166
G V ++ + + G YLG P V ++ I + + + VE R
Sbjct: 125 GEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVV 184
Query: 167 DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
DP YPGG+FDPLG + D + F E KVKEIKNGRLA+ + GF V Q+ G GPLEN
Sbjct: 185 DP---LYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLEN 240
Query: 227 LATHLADPWHNN 238
LA HLADP +NN
Sbjct: 241 LADHLADPVNNN 252
>gi|414589583|tpg|DAA40154.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
gi|414589584|tpg|DAA40155.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 271
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 110/210 (52%), Gaps = 32/210 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG PP+LDGS PGDFGFDPL LG PE L + ++EL+H RWAMLA IL
Sbjct: 68 WFPGSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAG-----IL 122
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME--- 165
VP+ L ++ A ++ G Y P T+ V + + + E +R +
Sbjct: 123 VPDLLARWGFIDAG-FSWFDAGSREYFADPW------TLFVSQMALMGWAEGRRWADYLR 175
Query: 166 --------KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFV 209
+ P +K YPGG FD + + P+ + KEIKNGRLA+LAFV
Sbjct: 176 PGCVDIEPRFPNRKNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEIKNGRLAMLAFV 235
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GF Q+ Y G GP++NL HLADP H NI
Sbjct: 236 GFWF-QAVYTGQGPIDNLLAHLADPGHCNI 264
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 103/195 (52%), Gaps = 12/195 (6%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE +RY+E ELIH RWAML + +L
Sbjct: 54 GEP-PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKS 112
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 167
G W +A GG YLG P V + L ++ + + VE R +
Sbjct: 113 GTQFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIVATLAVQVILMGLVEGYR-VNGG 170
Query: 168 PEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
P + YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP
Sbjct: 171 PAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGP 229
Query: 224 LENLATHLADPWHNN 238
++NL HL++P NN
Sbjct: 230 IQNLDDHLSNPTVNN 244
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 105/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 61 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 119
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 120 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 178
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 179 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 234
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLA P +NN
Sbjct: 235 GPLENLADHLAGPVNNN 251
>gi|162461878|ref|NP_001105427.1| light harvesting chlorophyll a /b binding protein [Zea mays]
gi|22230|emb|CAA37474.1| light harvesting chlorophyll a /b binding protein [Zea mays]
Length = 265
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 106/198 (53%), Gaps = 14/198 (7%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 110 PEALGLGNWVQAQEWAAV-PGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
+ G V + + + G YLG P + ++ I + + + VE R
Sbjct: 120 RNGVKFGEAVGFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG 179
Query: 167 ------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
DP YPGG+FDPLG + DP+ F E KVKE+K GRLA+ + GF V Q+ G
Sbjct: 180 PLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKKGRLAMFSMFGFFV-QAIVTG 235
Query: 221 TGPLENLATHLADPWHNN 238
GPLENLA H+ADP +NN
Sbjct: 236 KGPLENLADHIADPVNNN 253
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 105/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P Y G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 62 GEP-PSYRTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 120
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 179
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+K+GRLA+ + GF V Q+ G
Sbjct: 180 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKHGRLAMFSMFGFFV-QAIVTGK 235
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 236 GPLENLADHLADPVNNN 252
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 101/190 (53%), Gaps = 9/190 (4%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IH RWAML + +L +
Sbjct: 66 PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKF 125
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DP 168
G W +A GG YLG P V ++ I + + + VE R +
Sbjct: 126 GEAVWFKAGSQIFAEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 184
Query: 169 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+ENL+
Sbjct: 185 EDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLS 243
Query: 229 THLADPWHNN 238
HLADP NN
Sbjct: 244 DHLADPAVNN 253
>gi|115784|sp|P08222.1|CB22_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|167525|gb|AAA33125.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 206
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 105/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH WAML + F +L
Sbjct: 4 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRN 62
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 63 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 121
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 122 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 177
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 178 GPLENLADHLADPVNNN 194
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 98/190 (51%), Gaps = 9/190 (4%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL+G GD+G+D L PE R +E E+IH RWAML + +L +
Sbjct: 66 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKF 125
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DP 168
G W +A GG YLG P V ++ I + + + VE R D
Sbjct: 126 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGGPLGDV 184
Query: 169 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLENL
Sbjct: 185 TDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLN 243
Query: 229 THLADPWHNN 238
HLADP NN
Sbjct: 244 DHLADPVANN 253
>gi|297815028|ref|XP_002875397.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321235|gb|EFH51656.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 102/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F IL
Sbjct: 64 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 123
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + F+E R
Sbjct: 124 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGGGPL 182
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPL ++DP+ F E KVKE+KNGRLA+ GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFPMFGFFV-QAIVTGKG 238
Query: 223 PLENLATHLADPWHNN 238
P+ENL H+ADP NN
Sbjct: 239 PIENLFDHIADPVANN 254
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 99/195 (50%), Gaps = 19/195 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL+G GD+G+D L PE R +E E+IH RWAML + L PE L
Sbjct: 67 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALG-----CLTPELLAK 121
Query: 114 -----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 122 SGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGG 180
Query: 167 ---DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
D YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP
Sbjct: 181 PLGDVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGP 239
Query: 224 LENLATHLADPWHNN 238
LENL HLADP NN
Sbjct: 240 LENLNDHLADPVANN 254
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 102/193 (52%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLSKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P + ++ I + + + +E R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPL 181
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 182 GEGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 240
Query: 226 NLATHLADPWHNN 238
NL HL+DP NN
Sbjct: 241 NLFDHLSDPVANN 253
>gi|414589586|tpg|DAA40157.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 232
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 110/210 (52%), Gaps = 32/210 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG PP+LDGS PGDFGFDPL LG PE L + ++EL+H RWAMLA IL
Sbjct: 29 WFPGSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAG-----IL 83
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME--- 165
VP+ L ++ A ++ G Y P T+ V + + + E +R +
Sbjct: 84 VPDLLARWGFIDAG-FSWFDAGSREYFADPW------TLFVSQMALMGWAEGRRWADYLR 136
Query: 166 --------KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFV 209
+ P +K YPGG FD + + P+ + KEIKNGRLA+LAFV
Sbjct: 137 PGCVDIEPRFPNRKNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEIKNGRLAMLAFV 196
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GF Q+ Y G GP++NL HLADP H NI
Sbjct: 197 GFWF-QAVYTGQGPIDNLLAHLADPGHCNI 225
>gi|13265505|gb|AAG40044.2|AF324693_1 At2g34430 [Arabidopsis thaliana]
Length = 268
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 101/200 (50%), Gaps = 19/200 (9%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE R +E E+IH RWAML + F +L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 121
Query: 112 ALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSI---------AFVEHQR 162
+ G V Q W Q +G W T + E S + + R
Sbjct: 122 GVKFGEAVWVQGW--FTDLQRRRIGPT--WATPSLVHAQEHFSHLGYSSYPHGSLLRATR 177
Query: 163 SMEKDP----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 218
P E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 178 VPGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIV 236
Query: 219 PGTGPLENLATHLADPWHNN 238
G GPLENLA HLADP +NN
Sbjct: 237 TGKGPLENLADHLADPVNNN 256
>gi|312281813|dbj|BAJ33772.1| unnamed protein product [Thellungiella halophila]
Length = 266
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 102/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F IL
Sbjct: 64 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 123
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + +E R
Sbjct: 124 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRIGGGPL 182
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPL ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 238
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP NN
Sbjct: 239 PIENLFDHLADPVANN 254
>gi|226495517|ref|NP_001141336.1| uncharacterized protein LOC100273427 [Zea mays]
gi|194704056|gb|ACF86112.1| unknown [Zea mays]
Length = 271
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 110/210 (52%), Gaps = 32/210 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG PP+LDGS PGDFGFDPL LG PE L + ++EL+H RWAMLA IL
Sbjct: 68 WFPGSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAG-----IL 122
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME--- 165
VP+ L ++ A ++ G Y P T+ V + + + E +R +
Sbjct: 123 VPDLLARWGFIDAG-FSWFDAGSREYFADPW------TLFVSQMALMGWAEGRRWADYLR 175
Query: 166 --------KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFV 209
+ P ++ YPGG FD + + P+ + KEIKNGRLA+LAFV
Sbjct: 176 PGCVDIEPRFPNRRNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEIKNGRLAMLAFV 235
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GF Q+ Y G GP++NL HLADP H NI
Sbjct: 236 GFWF-QAVYTGQGPIDNLLAHLADPGHCNI 264
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 105/196 (53%), Gaps = 21/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L P +Y+E+ELIH RWAML + ++ PEAL
Sbjct: 157 PSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALG-----VVFPEALAK 211
Query: 116 GN-------WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRS--- 163
W +A GG YLG V ++ IL + + + E R
Sbjct: 212 AGVPLAEPVWFKAGAQIFSEGGL-DYLGNSNLVHAQSILAILAFQVVLMGLAEAYRVNGG 270
Query: 164 -MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
+ +D + YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ A GF V Q+ G G
Sbjct: 271 PLGEDSDAL-YPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYV-QALVTGEG 328
Query: 223 PLENLATHLADPWHNN 238
P+EN A H+ADP++ N
Sbjct: 329 PVENWAAHVADPFNVN 344
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 105/196 (53%), Gaps = 21/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L P +Y+E+ELIH RWAML + ++ PEAL
Sbjct: 397 PSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALG-----VVFPEALAK 451
Query: 116 GN-------WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRS--- 163
W +A GG YLG V ++ IL + + + E R
Sbjct: 452 AGVPLAEPVWFKAGAQIFSEGGL-DYLGNSNLVHAQSILAILAFQVVLMGLAEAYRVNGG 510
Query: 164 -MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
+ +D + YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ A GF V Q+ G G
Sbjct: 511 PLGEDSDAL-YPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYV-QALVTGEG 568
Query: 223 PLENLATHLADPWHNN 238
P+EN A H+ADP++ N
Sbjct: 569 PVENWAAHVADPFNVN 584
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 173 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 232
YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ A GF V Q+ G GP+EN A H+A
Sbjct: 40 YPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYV-QALVTGEGPVENWAAHVA 98
Query: 233 DPWHNN 238
DP++ N
Sbjct: 99 DPFNVN 104
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 105/197 (53%), Gaps = 22/197 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D L PE ++Y+E E+IH RWA+L + IL PE L
Sbjct: 56 PAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALG-----ILTPELLST 110
Query: 114 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
G W +A GG YLG+P + + L ++ + + +E R +
Sbjct: 111 YAGVKFGEPVWFKAGAQIFSEGGL-DYLGSPALIHAQNIVATLAVQVVLMGLIEGYR-VN 168
Query: 166 KDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
P + YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 169 GGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFV-QAIVTGK 227
Query: 222 GPLENLATHLADPWHNN 238
GP++NLA HLADP NN
Sbjct: 228 GPIQNLADHLADPGTNN 244
>gi|115774|sp|P04779.1|CB21_PETSP RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type I CAB-13; Short=LHCP; Flags:
Precursor
gi|20471|emb|CAA26210.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 101/193 (52%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L P + ++ E+IHCRW ML + F + +
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKF 126
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 127 GEAVWFKAGSQIFKEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 185
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E +VKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 186 IDP---LYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 241
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 242 NLADHLADPVNNN 254
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 98/190 (51%), Gaps = 9/190 (4%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL+G GD+G+D L PE R +E E+IH RWAML + +L +
Sbjct: 68 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DP 168
G W +A GG YLG P V ++ I + + + VE R D
Sbjct: 128 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGDV 186
Query: 169 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLENL
Sbjct: 187 TDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLN 245
Query: 229 THLADPWHNN 238
HLADP NN
Sbjct: 246 DHLADPVANN 255
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 101/196 (51%), Gaps = 21/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D L PE +RY+E ELIH RWAML + L PE L
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALG-----CLTPELLSK 109
Query: 114 -----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
G W +A GG YLG P V + L + + + VE R +
Sbjct: 110 NGVQFGEAVWFKAGAQIFQEGG-LDYLGNPSLVHAQNIVATLACQVILMGLVEGYR-VNG 167
Query: 167 DPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
P + YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 168 GPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 226
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLA+P NN
Sbjct: 227 PIENLNDHLANPAVNN 242
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 108/205 (52%), Gaps = 27/205 (13%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P +L G APGD+GFD L L P ERY E++H RWAMLA + +++PE L
Sbjct: 143 PDHLQGEAPGDYGFDILGLSRDPTAFERYFNFEILHARWAMLAALG-----VVIPELLDR 197
Query: 116 GNWVQAQE-------WAAVPGGQATYLGTP-VPWGTLPTILVIEFLSIAFV---EHQRSM 164
VQ E +A + G YLG P + ILVI F + + E+ R
Sbjct: 198 FGGVQFSEPVWWKVGYAKLQGDTLDYLGIPGLHIAGAQGILVIAFCQVILMLGPEYARYC 257
Query: 165 EKD---------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
+ P YPGGA FDPLG +KD FE+ KVKE+KNGRLA++A++GF V
Sbjct: 258 GIEALEPLGIFLPGDVNYPGGALFDPLGLTKDAAAFEDLKVKEMKNGRLAMVAWLGFYV- 316
Query: 215 QSAYPGTGPLENLATHLADPWHNNI 239
Q+ GP++NL L DP H N+
Sbjct: 317 QALVTQKGPIDNLFDFLEDPLHQNL 341
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 110/205 (53%), Gaps = 27/205 (13%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
PPYL G PGD+GFD LG+ ++Y E++H RWAMLA + + L+PE L L
Sbjct: 126 PPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGA-----LIPEVLDL 180
Query: 116 GNWVQAQE-------WAAVPGGQATYLGTP-VPWGTLPTILVIEFLSIAFV---EHQRSM 164
E ++ + G YLG P + ++VI + + E+ R
Sbjct: 181 TGAFHFAEPVWWRVGYSKLQGETLDYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYC 240
Query: 165 EKD---------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
+ P YPGG FDPL S+DP FE+ KVKEIKNGRLA++A++GF
Sbjct: 241 GIEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYA- 299
Query: 215 QSAYPGTGPLENLATHLADPWHNNI 239
Q+A+ G GP++NL H++DP HNN+
Sbjct: 300 QAAFTGKGPVQNLVDHVSDPLHNNL 324
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 102/196 (52%), Gaps = 21/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D L PE +RY+E ELIH RWAML + L PE L
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALG-----CLTPELLAK 109
Query: 114 -----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
G W +A GG YLG P V + L ++ + + +E R +
Sbjct: 110 SGTKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIVATLAVQVILMGLIEGYR-VNG 167
Query: 167 DPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
P + YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 168 GPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 226
Query: 223 PLENLATHLADPWHNN 238
P++NL HLA+P NN
Sbjct: 227 PVQNLDDHLANPGVNN 242
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 101/198 (51%), Gaps = 22/198 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D L P+ RY+E ELIH RWA+L + IL PE L
Sbjct: 51 PEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALG-----ILTPELLSQ 105
Query: 114 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
G W +A GG YLG + ++ L ++ + + E R+
Sbjct: 106 YAGVQFGEPVWFKAGAQIFADGG-LNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANG 164
Query: 166 K-----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
D YPGG FDPLG + DP F E KVKEIKNGRLA+ + +GF V Q+ G
Sbjct: 165 GSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFV-QAIVTG 223
Query: 221 TGPLENLATHLADPWHNN 238
GP++NL HLADP NN
Sbjct: 224 KGPVQNLTDHLADPTVNN 241
>gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Pseudotsuga menziesii]
Length = 234
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 102/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 32 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNG 91
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + +E R
Sbjct: 92 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWAFQVVLMGLIEGYRVGGGPL 150
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 151 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 206
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP NN
Sbjct: 207 PIENLFDHLADPTANN 222
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 102/196 (52%), Gaps = 21/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D L PE +RY+E ELIH RWAML + L PE L
Sbjct: 54 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALG-----CLTPELLAK 108
Query: 114 -----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
G W +A GG YLG P V + L ++ + + +E R +
Sbjct: 109 SGTKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIVATLAVQVILMGLIEGYR-VNG 166
Query: 167 DPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
P + YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 167 GPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 225
Query: 223 PLENLATHLADPWHNN 238
P++NL HLA+P NN
Sbjct: 226 PVQNLDDHLANPTVNN 241
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 101/196 (51%), Gaps = 21/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D L PE +RY+E ELIH RWAML + L PE L
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGC-----LTPELLSK 109
Query: 114 -----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
G W +A GG YLG P V + L + + + VE R +
Sbjct: 110 NGVQFGEAVWFKAGAQIFQEGG-LDYLGNPSLVHAQNIVATLACQVILMGLVEGYR-VNG 167
Query: 167 DPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
P + YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 168 GPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 226
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLA+P NN
Sbjct: 227 PIENLNDHLANPAVNN 242
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 102/196 (52%), Gaps = 21/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D L PE +RY+E ELIH RWAML + L PE L
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALG-----CLTPELLAK 109
Query: 114 -----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
G W +A GG YLG P V + L ++ + + +E R +
Sbjct: 110 NGTKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIVATLAVQVILMGLIEGYR-VNG 167
Query: 167 DPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
P + YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 168 GPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 226
Query: 223 PLENLATHLADPWHNN 238
P++NL HLA+P NN
Sbjct: 227 PVQNLDDHLANPTVNN 242
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 100/191 (52%), Gaps = 11/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE +RY+E ELIH RWAML + +L +
Sbjct: 56 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKNGVQF 115
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 171
G W +A GG YLG P V + L + + + VE R + P +
Sbjct: 116 GEAVWFKAGAQIFQEGG-LDYLGNPSLVHAQNIVATLACQVILMGLVEGYR-VNGGPAGE 173
Query: 172 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 174 GLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENL 232
Query: 228 ATHLADPWHNN 238
HLA+P NN
Sbjct: 233 NDHLANPAVNN 243
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 98/190 (51%), Gaps = 9/190 (4%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL+G GD+G+D L PE R +E E+IH RWAML + +L +
Sbjct: 68 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKSGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DP 168
G W +A GG YLG P V ++ I + + + VE R D
Sbjct: 128 GEAVWFKAGAQIFSEGGL-DYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGGPLGDV 186
Query: 169 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLENL
Sbjct: 187 TDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLN 245
Query: 229 THLADPWHNN 238
HLADP NN
Sbjct: 246 DHLADPVANN 255
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 101/196 (51%), Gaps = 21/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D L PE +RY+E ELIH RWAML + L PE L
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGC-----LTPELLSK 109
Query: 114 -----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
G W +A GG YLG P V + L + + + VE R +
Sbjct: 110 NGVQFGEAVWFKAGAQIFQEGG-LDYLGNPSLVHAQNIVATLACQVILMGLVEGYR-VNG 167
Query: 167 DPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
P + YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 168 GPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 226
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLA+P NN
Sbjct: 227 PIENLNDHLANPAVNN 242
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 103/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IH RWAML + F +L +
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 185
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 186 VDP---LYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 241
Query: 226 NLATHLADPWHNN 238
NLA LADP +NN
Sbjct: 242 NLADPLADPVNNN 254
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 100/191 (52%), Gaps = 11/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE +RY+E ELIH RWAML + +L
Sbjct: 58 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQF 117
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 171
G W +A GG YLG P V + L ++ + + VE R + P +
Sbjct: 118 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIVATLAVQVILMGLVEGYR-VNGGPAGE 175
Query: 172 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP++NL
Sbjct: 176 GLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIQNL 234
Query: 228 ATHLADPWHNN 238
HL++P NN
Sbjct: 235 DDHLSNPTVNN 245
>gi|145343493|ref|XP_001416356.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144576581|gb|ABO94649.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 203
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 104/209 (49%), Gaps = 33/209 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
WMPG P +L PGD+GFDPL LG+ PE+L+ Y ++EL H RWAML V +
Sbjct: 2 WMPGATAPAHLKNELPGDYGFDPLELGKDPEDLKWYVQAELQHGRWAMLGVAGAA----- 56
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
PE L W P + T+ ++ L + + E +R
Sbjct: 57 APEILTNMGISNLPNWHEAPSYDGYFTDA-------TTLFWVQMLMMNWAEVRRWQDIRK 109
Query: 163 --SMEKDPEKKK----------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVG 210
S+ +DP YPGG FDPLG++K + K KEI NGRLA++AF G
Sbjct: 110 PGSVSEDPTPFSNAKLPAGVVGYPGGIFDPLGYAKG--DLKTLKAKEIANGRLAMVAFAG 167
Query: 211 FCVQQSAYPGTGPLENLATHLADPWHNNI 239
VQ + G GP+ NL +H+ADP HNN+
Sbjct: 168 IMVQYD-HTGVGPVANLVSHMADPAHNNV 195
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 105/196 (53%), Gaps = 21/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L P +Y+E+ELIH RWAML + ++ PEAL
Sbjct: 140 PSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALG-----VVFPEALAK 194
Query: 116 GN-------WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRS--- 163
W +A GG YLG V ++ IL + + + E R
Sbjct: 195 AGVPLAEPVWFKAGAQIFSEGGL-DYLGNSNLVHAQSILAILAFQVVLMGLAEAYRVNGG 253
Query: 164 -MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
+ +D + YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ A GF V Q+ G G
Sbjct: 254 PLGEDSDAL-YPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYV-QALVTGEG 311
Query: 223 PLENLATHLADPWHNN 238
P+EN A H+ADP++ N
Sbjct: 312 PVENWAAHVADPFNVN 327
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 105/196 (53%), Gaps = 21/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L P +Y+E+ELIH RWAML + ++ PEAL
Sbjct: 380 PSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALG-----VVFPEALAK 434
Query: 116 GN-------WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRS--- 163
W +A GG YLG V ++ IL + + + E R
Sbjct: 435 AGVPLAEPVWFKAGAQIFSEGGL-DYLGNSNLVHAQSILAILAFQVVLMGLAEAYRVNGG 493
Query: 164 -MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
+ +D + YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ A GF V Q+ G G
Sbjct: 494 PLGEDSDAL-YPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYV-QALVTGEG 551
Query: 223 PLENLATHLADPWHNN 238
P+EN A H+ADP++ N
Sbjct: 552 PVENWAAHVADPFNVN 567
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 105/196 (53%), Gaps = 21/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L P +Y+E+ELIH RWAML + ++ PEAL
Sbjct: 620 PSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALG-----VVFPEALAK 674
Query: 116 GN-------WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRS--- 163
W +A GG YLG V ++ IL + + + E R
Sbjct: 675 AGVPLAEPVWFKAGAQIFSEGGL-DYLGNSNLVHAQSILAILAFQVVLMGLAEAYRVNGG 733
Query: 164 -MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
+ +D + YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ A GF V Q+ G G
Sbjct: 734 PLGEDSDAL-YPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYV-QALVTGEG 791
Query: 223 PLENLATHLADPWHNN 238
P+EN A H+ADP++ N
Sbjct: 792 PVENWAAHVADPFNVN 807
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 173 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 232
YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ A GF V Q+ G GP+EN A H+A
Sbjct: 23 YPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYV-QALVTGEGPVENWAAHVA 81
Query: 233 DPWHNN 238
DP++ N
Sbjct: 82 DPFNVN 87
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 100/191 (52%), Gaps = 11/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE +RY+E ELIH RWAML + +L +
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKNGVQF 114
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 171
G W +A GG YLG P V + L + + + VE R + P +
Sbjct: 115 GEAVWFKAGAQIFQEGG-LDYLGNPSLVHAQNIVATLACQVILMGLVEGYR-VNGGPAGE 172
Query: 172 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 173 GLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENL 231
Query: 228 ATHLADPWHNN 238
HLA+P NN
Sbjct: 232 NDHLANPAVNN 242
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 105/192 (54%), Gaps = 12/192 (6%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVP---EA 112
P YL G PGD+G+D L PE ++Y+E+ELIH RWAML + IL +
Sbjct: 51 PSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGGTS 110
Query: 113 LGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 170
G W +A GG YLG+P + ++ I++ + + + +E R + P
Sbjct: 111 FGESVWFRAGAQIFKDGG-LDYLGSPALIHAQSIGAIVISQVILMGLIEGYR-VNGGPAG 168
Query: 171 KK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
+ YPG +FDPLG + DP F E K+KEIKNGRLA+ + GF V Q+ G GP+EN
Sbjct: 169 EGLDPLYPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYV-QAIVTGKGPVEN 227
Query: 227 LATHLADPWHNN 238
A H+ADP+ N
Sbjct: 228 WAEHIADPFTAN 239
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 107/199 (53%), Gaps = 13/199 (6%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL+G PGD+G+D L PE +RY++ ELIH RWA+L + +L
Sbjct: 52 LSGEP-PAYLNGEFPGDYGWDTAGLSADPETFKRYRQLELIHARWALLGALGCVVPELLA 110
Query: 110 PEALGL---GNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSM 164
+ + G W + GG YLG V ++ L+++ + + + E R +
Sbjct: 111 RNGVAMPADGVWFKVGAEIFKEGG-LNYLGNENLVHAQSIVATLLVQLVLMGWAEGYR-I 168
Query: 165 EKDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
P + YPGGAFDPLG + DP E KVKE+KNGR+A+ A GF V Q+
Sbjct: 169 NGGPLGEGLDPLYPGGAFDPLGLADDPDTLAELKVKELKNGRMAMAAMFGFLV-QAIVTQ 227
Query: 221 TGPLENLATHLADPWHNNI 239
GPLENLA HLA P NN+
Sbjct: 228 KGPLENLADHLAAPGTNNV 246
>gi|148909129|gb|ABR17665.1| unknown [Picea sitchensis]
Length = 266
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 101/196 (51%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 64 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTG 123
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + +E R
Sbjct: 124 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWASQVGLMGLIEGYRVGGGPL 182
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 238
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP NN
Sbjct: 239 PIENLFDHLADPTANN 254
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 104/197 (52%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 43 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 101
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG + ++ I + + + VE R
Sbjct: 102 GVKFGEACWFKAGSQIFSEGG-LDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGP 160
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPL + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 161 LGEVTDP---IYPGGSFDPLALADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 216
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 217 GPLENLADHLADPVNNN 233
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 69 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 127
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 187 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 242
Query: 222 GPLENLATHLA 232
GP+ENLA HLA
Sbjct: 243 GPIENLADHLA 253
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 103/196 (52%), Gaps = 21/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D L PE +RY+E ELIH RWAML + I+ PE L
Sbjct: 46 PAYLTGEFPGDYGWDTAGLSADPETFQRYRELELIHARWAMLGALG-----IVTPELLAK 100
Query: 114 -----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
G W +A GG YLG P + + L ++ + + VE R +
Sbjct: 101 NGVPFGEAVWFKAGAQIFQEGG-LNYLGNPSLIHAQNIVATLAVQVILLGLVEGYR-VNG 158
Query: 167 DPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
P + YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 159 GPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSSFGFFV-QAIVTGKG 217
Query: 223 PLENLATHLADPWHNN 238
P++NL HL++P NN
Sbjct: 218 PIQNLDDHLSNPGVNN 233
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 101/196 (51%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE R +E E+IH RWAML + F IL
Sbjct: 63 EQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPL 181
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 182 GEGLDP---LYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTDKG 237
Query: 223 PLENLATHLADPWHNN 238
P++NL H+ADP NN
Sbjct: 238 PVQNLYDHVADPVANN 253
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G GD+G+D L PE R +E E+IH RWAML + +L +
Sbjct: 64 PSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKF 123
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 165
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 124 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGGPLGEV 182
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 183 TDP---IYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 238
Query: 226 NLATHLADPWHNN 238
NL+ HLADP NN
Sbjct: 239 NLSDHLADPVANN 251
>gi|357495587|ref|XP_003618082.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519417|gb|AET01041.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 557
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 127/258 (49%), Gaps = 41/258 (15%)
Query: 11 IATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFD 70
+ PS + SS+ F + AAA A W + YLDGS PGDFGFD
Sbjct: 305 FGARSLPSSIGSSRKGSFV---VKAAAPVKKGGANRQLWFASKQSLSYLDGSLPGDFGFD 361
Query: 71 PLRLGEVPENLERYKE------SELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEW 124
PL L + PE + + E E+I+ R+AML + + PE LG + A+
Sbjct: 362 PLGLSD-PEGVGGFIEPEWLAYGEIINGRFAMLGAAGA-----IAPEILGKAGLIPAE-- 413
Query: 125 AAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD------ 167
A+P Q + GT W T+ V+E + F EH+R SM K
Sbjct: 414 TALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRLQDWYNPGSMGKQYFLGLE 473
Query: 168 -----PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
+ YPGG F+PLGF KD + +E K+KE+KNGRLA+LA +G+ + Q+ G
Sbjct: 474 KGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFI-QALVTGV 532
Query: 222 GPLENLATHLADPWHNNI 239
GP +NL HLADP +NNI
Sbjct: 533 GPYQNLLDHLADPVNNNI 550
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 127/261 (48%), Gaps = 45/261 (17%)
Query: 11 IATTAFPSVLSSSKSKFFT---AVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDF 67
+ PS + SS+ F A S P N ++ W + YLDGS PGDF
Sbjct: 23 FGARSLPSSIGSSRKGSFVVKAASSPPVKQNGANRQL----WFASKQSLSYLDGSLPGDF 78
Query: 68 GFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQA 121
GFDPL L + PE + E E+I+ R+AML + + PE LG + A
Sbjct: 79 GFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGA-----IAPEILGKAGLIPA 132
Query: 122 QEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD--- 167
+ A+P Q + GT W T+ V+E + F EH+R SM K
Sbjct: 133 E--TALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRFQDWYNPGSMGKQYFL 190
Query: 168 --------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 218
+ YPGG F+PLGF KD + +E K+KE+KNGRLA+LA +G+ + Q+
Sbjct: 191 GLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFI-QALV 249
Query: 219 PGTGPLENLATHLADPWHNNI 239
G GP +NL HLADP +NNI
Sbjct: 250 TGVGPYQNLLDHLADPVNNNI 270
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 109/205 (53%), Gaps = 27/205 (13%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
PPYL G PGD+GFD LG+ ++Y E++H RWAMLA + + L+PE L
Sbjct: 123 PPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGA-----LIPEVFDL 177
Query: 116 GNWVQAQE-------WAAVPGGQATYLGTP-VPWGTLPTILVIEFLSIAFV---EHQRSM 164
E ++ + G YLG P + ++VI + + E+ R
Sbjct: 178 TGTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYC 237
Query: 165 EKD---------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
+ P YPGG FDPL S+DP FE+ KVKEIKNGRLA++A++GF
Sbjct: 238 GIEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYA- 296
Query: 215 QSAYPGTGPLENLATHLADPWHNNI 239
Q+A+ G GP++NL H++DP HNN+
Sbjct: 297 QAAFTGKGPVQNLVDHVSDPLHNNL 321
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL+G GD+G+D L PE R +E E+IH RWAML + +L +
Sbjct: 64 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKF 123
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME------ 165
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 124 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 182
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 183 TDP---IYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 238
Query: 226 NLATHLADPWHNN 238
NL HLADP NN
Sbjct: 239 NLNDHLADPVANN 251
>gi|326510279|dbj|BAJ87356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 219
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 103/194 (53%), Gaps = 11/194 (5%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F IL
Sbjct: 17 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 76
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP 168
+ G W +A GG YLG P V ++ I + + + F+E R + P
Sbjct: 77 IKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFIEGYR-VGGGP 134
Query: 169 EKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
+ YPGGAFDPLG + DP E KVKE+KNGRLA+ + GF V Q+ G GP+
Sbjct: 135 LGEGLDIIYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPV 193
Query: 225 ENLATHLADPWHNN 238
ENL H+ADP +NN
Sbjct: 194 ENLFDHIADPVNNN 207
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 103/196 (52%), Gaps = 21/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D L PE +RY+E ELIH RWAML + I+ PE L
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALG-----IVTPELLQK 109
Query: 114 -----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
G W +A GG YLG P + + L ++ + + VE R +
Sbjct: 110 NGVQFGEAVWFKAGAQIFQEGG-LNYLGNPSLIHAQNIVATLAVQVVLLGLVEGYR-VNG 167
Query: 167 DPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
P + YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 168 GPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSSFGFFV-QAIVTGKG 226
Query: 223 PLENLATHLADPWHNN 238
P++NL HL++P NN
Sbjct: 227 PIQNLDDHLSNPGVNN 242
>gi|116779839|gb|ABK21446.1| unknown [Picea sitchensis]
Length = 266
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 102/196 (52%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+ +D L PE + +E E+IH RWAML + F +L
Sbjct: 64 EQTPSYLTGEFPGDYRWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTG 123
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + +E R
Sbjct: 124 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWAFQVVLMGLIEGYRVGGGPL 182
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 238
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP +NN
Sbjct: 239 PIENLFDHLADPANNN 254
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 105/197 (53%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 43 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 101
Query: 112 ALGLG--NWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G +W +A GG YLG + ++ I + + + VE R
Sbjct: 102 GVKFGEASWFKAGSQIFSEGG-LDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGP 160
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPL + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 161 LGEVTDP---IYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 216
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLA+P +NN
Sbjct: 217 GPLENLADHLAEPVNNN 233
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 105/192 (54%), Gaps = 12/192 (6%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVP---EA 112
P YL G PGD+G+D L PE ++Y+E+ELIH RWAML + IL +
Sbjct: 48 PSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGGTS 107
Query: 113 LGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 170
G W +A GG YLG+P + ++ I++ + + + +E R + P
Sbjct: 108 FGESVWFRAGAQIFKDGG-LDYLGSPALIHAQSIGAIVISQVILMGLIEGYR-VNGGPAG 165
Query: 171 KK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
+ YPG +FDPLG + DP F E K+KEIKNGRLA+ + GF V Q+ G GP+EN
Sbjct: 166 EGLDPLYPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYV-QAIVTGKGPVEN 224
Query: 227 LATHLADPWHNN 238
A H+ADP+ N
Sbjct: 225 WAEHVADPFTAN 236
>gi|357495589|ref|XP_003618083.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519418|gb|AET01042.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 573
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 127/258 (49%), Gaps = 41/258 (15%)
Query: 11 IATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFD 70
+ PS + SS+ F + AAA A W + YLDGS PGDFGFD
Sbjct: 321 FGARSLPSSIGSSRKGSFV---VKAAAPVKKGGANRQLWFASKQSLSYLDGSLPGDFGFD 377
Query: 71 PLRLGEVPENLERYKE------SELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEW 124
PL L + PE + + E E+I+ R+AML + + PE LG + A+
Sbjct: 378 PLGLSD-PEGVGGFIEPEWLAYGEIINGRFAMLGAAGA-----IAPEILGKAGLIPAE-- 429
Query: 125 AAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD------ 167
A+P Q + GT W T+ V+E + F EH+R SM K
Sbjct: 430 TALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRLQDWYNPGSMGKQYFLGLE 489
Query: 168 -----PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
+ YPGG F+PLGF KD + +E K+KE+KNGRLA+LA +G+ + Q+ G
Sbjct: 490 KGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFI-QALVTGV 548
Query: 222 GPLENLATHLADPWHNNI 239
GP +NL HLADP +NNI
Sbjct: 549 GPYQNLLDHLADPVNNNI 566
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 127/261 (48%), Gaps = 45/261 (17%)
Query: 11 IATTAFPSVLSSSKSKFFT---AVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDF 67
+ PS + SS+ F A S P N ++ W + YLDGS PGDF
Sbjct: 23 FGARSLPSSIGSSRKGSFVVKAASSPPVKQNGANRQL----WFASKQSLSYLDGSLPGDF 78
Query: 68 GFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQA 121
GFDPL L + PE + E E+I+ R+AML + + PE LG + A
Sbjct: 79 GFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGA-----IAPEILGKAGLIPA 132
Query: 122 QEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD--- 167
+ A+P Q + GT W T+ V+E + F EH+R SM K
Sbjct: 133 E--TALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRFQDWYNPGSMGKQYFL 190
Query: 168 --------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 218
+ YPGG F+PLGF KD + +E K+KE+KNGRLA+LA +G+ + Q+
Sbjct: 191 GLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFI-QALV 249
Query: 219 PGTGPLENLATHLADPWHNNI 239
G GP +NL HLADP +NNI
Sbjct: 250 TGVGPYQNLLDHLADPVNNNI 270
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 101/196 (51%), Gaps = 21/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D L PE +RY+E ELIH RWAML + L PE L
Sbjct: 58 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALG-----CLTPELLAK 112
Query: 114 -----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
G W +A GG YLG P V + L + + + VE R +
Sbjct: 113 NGTQFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIVATLACQVILMGLVEGYR-VNG 170
Query: 167 DPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
P + YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 171 GPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 229
Query: 223 PLENLATHLADPWHNN 238
P++NL HL++P NN
Sbjct: 230 PVQNLDDHLSNPTVNN 245
>gi|115775|sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding protein type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20935|emb|CAA31773.1| chlorophylla/b-binding preprotein (AA -37 to 229) [Pinus
thunbergii]
Length = 266
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 99/193 (51%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D + PE + +E E+IHCRWAML + F +L
Sbjct: 64 EGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNG 123
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR---SME 165
L G W +A GG Y G P + ++ I + + + +E R
Sbjct: 124 LKFGEAVWFKAGAQIFSEGG-LDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTL 182
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ PGGAFDPLG + DP+ E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 183 GEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 241
Query: 226 NLATHLADPWHNN 238
NL HLADP NN
Sbjct: 242 NLYDHLADPVANN 254
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL+G GD+G+D L PE R +E E+IH RWAML + +L +
Sbjct: 68 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 165
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGAQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 186
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 TDP---IYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NL HLADP NN
Sbjct: 243 NLNDHLADPVANN 255
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 69 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 127
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 128 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 187 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 242
Query: 222 GPLENLATHLA 232
GP+ENLA HLA
Sbjct: 243 GPIENLADHLA 253
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL+G GD+G+D L PE R +E E+IH RWAML + +L +
Sbjct: 68 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 165
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 186
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 TDP---IYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NL HLADP NN
Sbjct: 243 NLNDHLADPVANN 255
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 102/193 (52%), Gaps = 16/193 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 69 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKN 127
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 128 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 187 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 242
Query: 222 GPLENLATHLADP 234
GP+ENLA HLADP
Sbjct: 243 GPIENLADHLADP 255
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 109/205 (53%), Gaps = 27/205 (13%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+GFD L E P +++ E++H RWAMLA + + LVPE L +
Sbjct: 130 PKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGA-----LVPEILDI 184
Query: 116 GNWVQAQE-------WAAVPGGQATYLGTPVPW--GTLPTILVIEFLSIAFV--EHQRSM 164
E ++ + G YLG P G+ I++ +I V E+ R
Sbjct: 185 FGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYC 244
Query: 165 EKD---------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
+ P YPGG FDPL SKD + FEE KVKEIKNGRLA++A++GF
Sbjct: 245 GIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGF-YS 303
Query: 215 QSAYPGTGPLENLATHLADPWHNNI 239
Q+A G GP++NL H+ADP+HNN
Sbjct: 304 QAALTGKGPVQNLLNHIADPFHNNF 328
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL+G GD+G+D L PE R +E E+IH RWAML + +L +
Sbjct: 69 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 128
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 165
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 129 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 187
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 188 TDP---IYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 243
Query: 226 NLATHLADPWHNN 238
NL HLADP NN
Sbjct: 244 NLNDHLADPVANN 256
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 101/196 (51%), Gaps = 20/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE RY+E E+IH RWA+L + I+ PE L
Sbjct: 53 PSYLKGEYPGDYGWDTAGLSADPETFSRYREIEVIHSRWALLGTLG-----IVTPELLEK 107
Query: 116 GNWVQAQEWAAVPGGQA-------TYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
V+ QE G YLG P V ++ + + + + E R +
Sbjct: 108 YGGVKFQEAVWFKAGAQIFSADGLNYLGNPSLVHAQSIIATVATQVILLGLAEGYR-VNG 166
Query: 167 DPEKK----KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
P + YPGGAFDPLG + DP F E KVKEIKNGRLA A +GF V Q+ G G
Sbjct: 167 GPAGEITDPLYPGGAFDPLGLADDPDTFAELKVKEIKNGRLAQFAALGFFV-QAIVTGKG 225
Query: 223 PLENLATHLADPWHNN 238
P++NL HLADP+ N
Sbjct: 226 PIQNLEDHLADPFAVN 241
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL+G GD+G+D L PE R +E E+IH RWAML + +L +
Sbjct: 68 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKSGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 165
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 186
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 TDP---IYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NL HLADP NN
Sbjct: 243 NLNDHLADPVANN 255
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 101/193 (52%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IH RWAML + F +L +
Sbjct: 55 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 114
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 115 GEAVWFKAGAQIFSEGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 173
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 174 VDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 229
Query: 226 NLATHLADPWHNN 238
NLA LADP NN
Sbjct: 230 NLADRLADPVANN 242
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL+G GD+G+D L PE R +E E+IH RWAML + +L +
Sbjct: 64 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 123
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 165
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 124 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 182
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 183 TDP---IYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 238
Query: 226 NLATHLADPWHNN 238
NL HLADP NN
Sbjct: 239 NLNDHLADPVANN 251
>gi|125620170|gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 101/195 (51%), Gaps = 19/195 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D L PE + +E E+IH RWAML V +VPE L
Sbjct: 69 PSYLTGEFPGDYGWDSAGLSAEPETFAKNRELEVIHARWAMLGTVGC-----IVPELLER 123
Query: 114 -----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
G W +A G YLG P + + +L + + + +E R
Sbjct: 124 NGVKIGEAVWFKAGSQIFRDEG-LNYLGDPKLIHAQNILAVLAAQVILMGAIEGYRISGG 182
Query: 167 ---DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
+P YPGG FDPL + DP++F KVKEIKNGRLA+ A +GF V Q+ G GP
Sbjct: 183 PLGEPTDPLYPGGNFDPLHLADDPEEFAILKVKEIKNGRLAMFAMLGFYV-QAIVTGKGP 241
Query: 224 LENLATHLADPWHNN 238
LENL HLADP+ NN
Sbjct: 242 LENLYDHLADPFKNN 256
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 102/194 (52%), Gaps = 24/194 (12%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML + SK+ +
Sbjct: 51 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVS 110
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
EA+ W +A GG YLG V ++ L + + + E R+
Sbjct: 111 FGEAV----WFKAGAQIFAEGGL-NYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGG 165
Query: 167 ------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
DP +PGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 166 PLGEGLDP---LHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTG 221
Query: 221 TGPLENLATHLADP 234
GP+ENL+ HLA+P
Sbjct: 222 KGPIENLSDHLANP 235
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 106/212 (50%), Gaps = 48/212 (22%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D LG P L RY+ +++IH RWAML V+ F PE +
Sbjct: 854 PEYLTGELPGDYGWDTAGLGADPAKLARYRVAQVIHGRWAMLGVLGCWF-----PECI-- 906
Query: 116 GNWVQAQEWAAVPGGQ---------------ATYLGTPVPWGTL-PTILVIEFLS----I 155
W VP G+ YLG P G + +V+ FLS +
Sbjct: 907 ------NRWGGVPFGEPVWFKAGAQIFSEDGLNYLGQP---GLIHAQSVVLTFLSTLVLM 957
Query: 156 AFVEHQRSM--------EKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLA 207
VE RS + DP YPGG FDPLG + DP+ F E KVKE+KNGRLA++A
Sbjct: 958 GAVEAYRSAGSVGDFGADLDP---LYPGGPFDPLGLADDPEAFLELKVKEVKNGRLAMVA 1014
Query: 208 FVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GF V Q G GP+EN HL DP+ NNI
Sbjct: 1015 IFGFFV-QGILTGKGPVENWVDHLTDPFVNNI 1045
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 104/201 (51%), Gaps = 26/201 (12%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D LG P L RY+E+E+IH RWAML + ++ PE L
Sbjct: 612 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALG-----VVTPELLA- 665
Query: 116 GNWVQAQEWAA--VPGGQA------TYLGTPVPWGTLPTILVIEFLS----IAFVEHQRS 163
GN V E A G Q YLG P +V+ FLS + VE R
Sbjct: 666 GNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSL--IHAQSVVLTFLSTLAIMGAVEAYRY 723
Query: 164 MEKDPEKKK-----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 218
+ + YPGG FDPLG + DP E KVKE+KNGRLA++A +GF VQ
Sbjct: 724 GGGVGDSGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVT 783
Query: 219 PGTGPLENLATHLADPWHNNI 239
GP+ENL HLADP NNI
Sbjct: 784 K-AGPVENLTFHLADPSANNI 803
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 104/201 (51%), Gaps = 26/201 (12%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D LG P L RY+E+E+IH RWAML + ++ PE L
Sbjct: 151 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALG-----VVTPELLA- 204
Query: 116 GNWVQAQEWAA--VPGGQA------TYLGTPVPWGTLPTILVIEFLS----IAFVEHQRS 163
GN V E A G Q YLG P +V+ FLS + VE R
Sbjct: 205 GNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSL--IHAQSVVLTFLSTLAIMGAVEAYRY 262
Query: 164 MEKDPEKKK-----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 218
+ + YPGG FDPLG + DP E KVKE+KNGRLA++A +GF VQ
Sbjct: 263 GGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVT 322
Query: 219 PGTGPLENLATHLADPWHNNI 239
GP+ENL HLADP NNI
Sbjct: 323 K-AGPVENLTFHLADPSANNI 342
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 105/201 (52%), Gaps = 19/201 (9%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV-------VSS 102
+ G P YL G GD+GFD L P+ +RY+++EL + RWAML V V S
Sbjct: 371 LSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGRWAMLGVLGCLAPEVLS 430
Query: 103 KFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEH 160
F + PE + W + + GG YL P + L LV+E + E
Sbjct: 431 NVFGVPYPEPV----WFKTGA-TILNGGSIDYLANPKLIHASNLLLTLVLELVFFFAAET 485
Query: 161 QRSMEKDP----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQS 216
R + P + K YPGG FDPLG SKDP F E KVKE+KNGRLA+LA +G V Q+
Sbjct: 486 WREAGEGPLGKAQDKSYPGGVFDPLGLSKDPAAFAEAKVKEVKNGRLAMLAMLGLFV-QA 544
Query: 217 AYPGTGPLENLATHLADPWHN 237
G PLENL+ HLA+P N
Sbjct: 545 GVTGQSPLENLSAHLANPGVN 565
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 173 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 232
YPGG FDPLG + DP+ F E KVKE+KNGRLA++A GF V Q G GP+EN HL
Sbjct: 40 YPGGPFDPLGLADDPEAFLELKVKEVKNGRLAMVAIFGFSV-QGILTGKGPVENWVDHLT 98
Query: 233 DPWHNNI 239
DP+ NN+
Sbjct: 99 DPFENNL 105
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 102/194 (52%), Gaps = 24/194 (12%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML + SK+ +
Sbjct: 51 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVS 110
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
EA+ W +A GG YLG V ++ L + + + E R+
Sbjct: 111 FGEAV----WFKAGAQIFAEGGL-NYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGG 165
Query: 167 ------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
DP +PGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 166 PLGEGLDP---LHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTG 221
Query: 221 TGPLENLATHLADP 234
GP+ENL+ HLA+P
Sbjct: 222 KGPIENLSDHLANP 235
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 102/194 (52%), Gaps = 24/194 (12%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML + SK+ +
Sbjct: 52 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVS 111
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
EA+ W +A GG YLG V ++ L + + + E R+
Sbjct: 112 FGEAV----WFKAGAQIFAEGGL-NYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGG 166
Query: 167 ------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
DP +PGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 167 PLGEGLDP---LHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTG 222
Query: 221 TGPLENLATHLADP 234
GP+ENL+ HLA+P
Sbjct: 223 KGPIENLSDHLANP 236
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 102/194 (52%), Gaps = 24/194 (12%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML + SK+ +
Sbjct: 51 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVS 110
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
EA+ W +A GG YLG V ++ L + + + E R+
Sbjct: 111 FGEAV----WFKAGAQIFAEGGL-NYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGG 165
Query: 167 ------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
DP +PGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 166 PLGEGLDP---LHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTG 221
Query: 221 TGPLENLATHLADP 234
GP+ENL+ HLA+P
Sbjct: 222 KGPIENLSDHLANP 235
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 102/194 (52%), Gaps = 24/194 (12%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML + SK+ +
Sbjct: 50 PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVS 109
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
EA+ W +A GG YLG V ++ L + + + E R+
Sbjct: 110 FGEAV----WFKAGAQIFAEGGL-NYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGG 164
Query: 167 ------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
DP +PGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 165 PLGEGLDP---LHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTG 220
Query: 221 TGPLENLATHLADP 234
GP+ENL+ HLA+P
Sbjct: 221 KGPIENLSDHLANP 234
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 113/221 (51%), Gaps = 36/221 (16%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P YL G GD+G+DPL LG P L Y++SEL+H RWAML V +L
Sbjct: 35 WAPGVVAPDYLKGELAGDYGWDPLGLGADPVALRWYRQSELVHARWAMLGVAG-----VL 89
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
V E V + G L P + +L EF+ + +VE +R
Sbjct: 90 VQE-------VVKPDVYFYEAGLPQNLPEPFTNVNMGGLLAWEFILMHWVEVRRWQDYKN 142
Query: 163 --SMEKDPEKK---------KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGF 211
S+ +DP K YPGG FDPLGFSK +E + KEIKNGRLA++A++GF
Sbjct: 143 FGSVNEDPIFKGNKVPNPEMGYPGGIFDPLGFSKG--NLKELQTKEIKNGRLAMVAYMGF 200
Query: 212 CVQQSAYPGTGPLENLATHLADPWHN----NIGDVIIPRGI 248
+Q A G GPL L+ HL++P+ N NIG +P +
Sbjct: 201 VLQAQA-TGKGPLAALSAHLSNPFGNNILKNIGTCTVPHSV 240
>gi|388515841|gb|AFK45982.1| unknown [Lotus japonicus]
Length = 265
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 101/196 (51%), Gaps = 15/196 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F IL
Sbjct: 63 EQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILERNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + +E R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRVGGGPL 181
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---LYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 223 PLENLATHLADPWHNN 238
P++NL H+ADP NN
Sbjct: 238 PIQNLYDHVADPVANN 253
>gi|225690804|gb|ACO06088.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 263
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 101/193 (52%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + F IL
Sbjct: 61 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 120
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP 168
+ G W +A GG YLG P V ++ I ++ + + F+E R
Sbjct: 121 IKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWAVQVVLMGFIEGYRVGGGPL 179
Query: 169 EKKK---YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
++ YPGGAFDPLG + DP E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 180 DEGLDIIYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPVE 238
Query: 226 NLATHLADPWHNN 238
NL L DP +NN
Sbjct: 239 NLFDQLRDPGNNN 251
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 104/201 (51%), Gaps = 26/201 (12%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D LG P L RY+E+E+IH RWAML + ++ PE L
Sbjct: 114 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALG-----VVTPELLA- 167
Query: 116 GNWVQAQEWAA--VPGGQA------TYLGTPVPWGTLPTILVIEFLS----IAFVEHQRS 163
GN V E A G Q YLG P +V+ FLS + VE R
Sbjct: 168 GNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSL--IHAQSVVLTFLSTLAIMGAVEAYRY 225
Query: 164 MEKDPEKKK-----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 218
+ + YPGG FDPLG + DP E KVKE+KNGRLA++A +GF VQ
Sbjct: 226 GGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVT 285
Query: 219 PGTGPLENLATHLADPWHNNI 239
GP+ENL HLADP NNI
Sbjct: 286 K-AGPVENLTFHLADPSSNNI 305
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 102/201 (50%), Gaps = 31/201 (15%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D LG P L RY+E+E+IH RWAML + PE L
Sbjct: 349 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAML----------VTPELLA- 397
Query: 116 GNWVQAQEWAA--VPGGQA------TYLGTPVPWGTLPTILVIEFLS----IAFVEHQRS 163
GN V E A G Q YLG P +V+ FLS + VE R
Sbjct: 398 GNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSL--IHAQSVVLTFLSTLAIMGAVEAYRY 455
Query: 164 MEKDPEKKK-----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 218
+ + YPGG FDPLG + DP E KVKE+KNGRLA++A +GF VQ
Sbjct: 456 GGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVT 515
Query: 219 PGTGPLENLATHLADPWHNNI 239
GP+ENL HLADP NNI
Sbjct: 516 K-AGPVENLTFHLADPSSNNI 535
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 173 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 232
YPGG FDPLG + DP E KVKE+KNGRLA++A +GF VQ GP+ENL HLA
Sbjct: 5 YPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTK-AGPVENLTFHLA 63
Query: 233 DPWHNNI 239
DP NNI
Sbjct: 64 DPSSNNI 70
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 101/196 (51%), Gaps = 21/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D L PE +RY+E ELIH RWAML + L PE L
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALG-----CLTPELLAK 109
Query: 114 -----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
G W +A GG YLG P V + L + + + +E R +
Sbjct: 110 NGTKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIVATLACQVILMGLIEGYR-VNG 167
Query: 167 DPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
P + YPG +FDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 168 GPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 226
Query: 223 PLENLATHLADPWHNN 238
P++NL HLA+P NN
Sbjct: 227 PVQNLDDHLANPTVNN 242
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 100/198 (50%), Gaps = 22/198 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D L P+ RY+E ELIH RWA+L + IL PE L
Sbjct: 51 PEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALG-----ILTPELLSQ 105
Query: 114 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
G W +A GG YLG + ++ L ++ + + E R+
Sbjct: 106 YAGVQFGEPVWFKAGAQIFADGG-LNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANG 164
Query: 166 K-----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
D YPGG FDPLG + DP F E KVKEIKNGRLA+ + +GF V Q+ G
Sbjct: 165 GSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFV-QAIVTG 223
Query: 221 TGPLENLATHLADPWHNN 238
GP++NL HLADP N
Sbjct: 224 KGPVQNLTDHLADPTVNK 241
>gi|388515199|gb|AFK45661.1| unknown [Medicago truncatula]
Length = 277
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 127/257 (49%), Gaps = 45/257 (17%)
Query: 15 AFPSVLSSSKSKFFT---AVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDP 71
+ PS + SS+ F A S P N ++ W + YLDGS PGDFGFDP
Sbjct: 27 SLPSSIGSSRKGSFVVKAASSPPVKQNGANRQL----WFASKQSLSYLDGSLPGDFGFDP 82
Query: 72 LRLGEVPENLERYKE------SELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
L L + PE + E E+I+ R+AML + + PE LG + A+
Sbjct: 83 LGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGA-----IAPEILGKAGLIPAE--T 134
Query: 126 AVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD------- 167
A+P Q + GT W T+ V+E + F EH+R SM K
Sbjct: 135 ALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRFQDWYNPGSMGKQYFLGLEK 194
Query: 168 ----PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
+ YPGG F+PLGF KD + +E K+KE+KNGRLA+LA +G+ + Q+ G G
Sbjct: 195 GLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFI-QALVTGVG 253
Query: 223 PLENLATHLADPWHNNI 239
P +NL HLADP +NNI
Sbjct: 254 PYQNLLDHLADPVNNNI 270
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 104/201 (51%), Gaps = 26/201 (12%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D LG P L RY+E+E+IH RWAML + ++ PE L
Sbjct: 62 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALG-----VVTPELLA- 115
Query: 116 GNWVQAQEWAA--VPGGQA------TYLGTPVPWGTLPTILVIEFLS----IAFVEHQRS 163
GN V E A G Q YLG P +V+ FLS + VE R
Sbjct: 116 GNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSL--IHAQSVVLTFLSTLAIMGAVEAYRY 173
Query: 164 MEKDPEKKK-----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 218
+ + YPGG FDPLG + DP E KVKE+KNGRLA++A +GF VQ
Sbjct: 174 GGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVT 233
Query: 219 PGTGPLENLATHLADPWHNNI 239
GP+ENL HLADP NNI
Sbjct: 234 K-AGPVENLTFHLADPSSNNI 253
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL 113
P YL G PGD+G+D LG P L RY+E+E+IH RWAML + ++ PE L
Sbjct: 297 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALG-----VVTPELL 349
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 98/193 (50%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G GD+G+D L PE R +E E+IH RWAML + +L +
Sbjct: 68 PSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 165
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 186
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 TDP---IYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NL HLADP NN
Sbjct: 243 NLNDHLADPVANN 255
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 101/196 (51%), Gaps = 21/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D L PE +RY+E ELIH RWAML + L PE L
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALG-----CLTPELLAK 109
Query: 114 -----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
G W +A GG YLG P V + L ++ + + +E R +
Sbjct: 110 SGTKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIVATLAVQVILMGLIEGYR-VNG 167
Query: 167 DPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
P + YPG +FDPLG + DP F E KVKEIKNG LA+ + GF V Q+ G G
Sbjct: 168 GPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGALAMFSMFGFFV-QAIVTGKG 226
Query: 223 PLENLATHLADPWHNN 238
P++NL HLA+P NN
Sbjct: 227 PVQNLDDHLANPGVNN 242
>gi|20218821|emb|CAC84495.1| putative chlorophyll A-B binding protein type I [Pinus pinaster]
Length = 195
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 98/185 (52%), Gaps = 15/185 (8%)
Query: 64 PGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGN--WVQA 121
PGD+G+D L PE + +E E+IHCRWAML + F +L + G W +A
Sbjct: 4 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKA 63
Query: 122 QEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKY 173
GG YLG P + ++ I + + + +E R DP Y
Sbjct: 64 GAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP---LY 119
Query: 174 PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 233
PGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP+ENL HLAD
Sbjct: 120 PGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHLAD 178
Query: 234 PWHNN 238
P NN
Sbjct: 179 PTANN 183
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 108/205 (52%), Gaps = 27/205 (13%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+GFD L E P +++ E++H RWAMLA + + LVPE L +
Sbjct: 130 PKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGA-----LVPEILDI 184
Query: 116 GNWVQAQE-------WAAVPGGQATYLGTPVPW--GTLPTILVIEFLSIAFV--EHQRSM 164
E ++ + G YLG P G+ I++ +I V E+ R
Sbjct: 185 FGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYC 244
Query: 165 EKD---------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
+ P YPGG FDPL SKD FEE KVKEIKNGRLA++A++GF
Sbjct: 245 GIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGF-YS 303
Query: 215 QSAYPGTGPLENLATHLADPWHNNI 239
Q+A G GP++NL H+ADP+HNN
Sbjct: 304 QAALTGKGPVQNLLDHIADPFHNNF 328
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 98/193 (50%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G GD+G+D L PE R +E E+IH RWAML + +L +
Sbjct: 66 PSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 125
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME------ 165
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 126 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWASQVVLMGAVEGYRVAGGPLGEI 184
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 TDP---IYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 226 NLATHLADPWHNN 238
NL HLADP NN
Sbjct: 241 NLNDHLADPVANN 253
>gi|412990451|emb|CCO19769.1| unknown [Bathycoccus prasinos]
Length = 241
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 104/208 (50%), Gaps = 30/208 (14%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
WMPG P +L G PGD+GFDPL LGE ++L+ Y ++EL H RWAML V +
Sbjct: 39 WMPGTAAPSHLKGMLPGDYGFDPLNLGEDSKDLDWYVQAELQHARWAMLGVAG-----MA 93
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
PE L + W P + + T+ ++ + + E +R
Sbjct: 94 APELLTMFGVSDLPNWHDAPFYNGYFASS-------TTLFTVQMFMMNWAEIRRWQDIKN 146
Query: 163 --SMEKDPE---------KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGF 211
S+ +DP YPGG F+P+ + K + + K KEI NGRLA++A +G
Sbjct: 147 PGSVSEDPAFPGNKLPAGDVGYPGGIFNPMNYGKSTDELKALKAKEIANGRLAMVAALG- 205
Query: 212 CVQQSAYPGTGPLENLATHLADPWHNNI 239
C Q + G GP+ENL +HL++P NN+
Sbjct: 206 CFIQYDHTGVGPVENLTSHLSNPGVNNV 233
>gi|116789194|gb|ABK25154.1| unknown [Picea sitchensis]
Length = 240
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 97/186 (52%), Gaps = 21/186 (11%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 64 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTG 123
Query: 113 LGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK 172
+ G +A + A+ Q +G +IE + + DP
Sbjct: 124 VKFG---EAVWFKAIWASQVVLMG------------LIEGYRVGGGPLGEGL--DP---L 163
Query: 173 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 232
YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP+ENL HLA
Sbjct: 164 YPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLFDHLA 222
Query: 233 DPWHNN 238
DP NN
Sbjct: 223 DPTANN 228
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 102/193 (52%), Gaps = 16/193 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 69 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKN 127
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG +LG P + ++ I + + + VE R
Sbjct: 128 GVKFGEAVWFKAGAQIFSEGG-LDHLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 187 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 242
Query: 222 GPLENLATHLADP 234
GP+ENLA HLADP
Sbjct: 243 GPIENLADHLADP 255
>gi|123316054|gb|ABM74386.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
gi|123316062|gb|ABM74387.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
Length = 261
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 103/204 (50%), Gaps = 23/204 (11%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D P RY+ E+IH RWA+L + I+
Sbjct: 54 LSGEP-PSYLTGEFPGDYGWDTAGFSADPTTFARYRTIEVIHARWALLGALG-----IVT 107
Query: 110 PEALGLGN---------WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFV 158
PE L W +A GG YLG P + ++ L ++ + +
Sbjct: 108 PEILAQNGVPFSGDAAIWFKAGSEIFKEGG-LNYLGNPNLIHAQSILATLAVQVIVMGAA 166
Query: 159 EHQRSMEKDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
E R+ + P + YPGG FDPLG + DP F E KVKEIKNGRLA+ A GF V
Sbjct: 167 EGFRANGEAPGVEGLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFACFGFFV- 225
Query: 215 QSAYPGTGPLENLATHLADPWHNN 238
Q+ G GP++NL HLADP NN
Sbjct: 226 QAIVTGKGPIQNLEDHLADPGVNN 249
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 104/201 (51%), Gaps = 26/201 (12%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D LG P L RY+E+E+IH RWAML + ++ PE L
Sbjct: 408 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALG-----VVTPELLA- 461
Query: 116 GNWVQAQEWAA--VPGGQA------TYLGTPVPWGTLPTILVIEFLS----IAFVEHQRS 163
GN V E A G Q YLG P +V+ FLS + VE R
Sbjct: 462 GNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSL--IHAQSVVLTFLSTLAIMGAVEAYRY 519
Query: 164 MEKDPEKKK-----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 218
+ + YPGG FDPLG + DP E KVKE+KNGRLA++A +GF VQ
Sbjct: 520 GGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVT 579
Query: 219 PGTGPLENLATHLADPWHNNI 239
GP+ENL HLADP NNI
Sbjct: 580 K-AGPVENLTFHLADPSANNI 599
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 105/201 (52%), Gaps = 19/201 (9%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV-------VSS 102
+ G P YL G GD+GFD L P+ +RY+++EL + RWAML V V S
Sbjct: 167 LSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGRWAMLGVLGCLAPEVLS 226
Query: 103 KFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEH 160
F + PE + W + + GG YL P + L LV+E + E
Sbjct: 227 NVFGVPYPEPV----WFKTGA-TILNGGSIDYLANPKLIHASNLLLTLVLELVFFFAAET 281
Query: 161 QRSMEKDP----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQS 216
R + P + K YPGG FDPLG SKDP F E KVKE+KNGRLA+LA +G V Q+
Sbjct: 282 WREAGEGPLGKAQDKSYPGGVFDPLGLSKDPAAFAEAKVKEVKNGRLAMLAMLGLFV-QA 340
Query: 217 AYPGTGPLENLATHLADPWHN 237
G PLENL+ HLA+P N
Sbjct: 341 GVTGQSPLENLSAHLANPGVN 361
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 173 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 232
YPGG FDPLG + DP E KVKE+KNGRLA++A +GF VQ GP+ENL HLA
Sbjct: 73 YPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTK-AGPVENLTFHLA 131
Query: 233 DPWHNNI 239
DP NNI
Sbjct: 132 DPSANNI 138
>gi|452341|emb|CAA48641.1| type II light-harvesting chlorophyll a /b-binding protein [Zea
mays]
Length = 229
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 99/193 (51%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G++ + PE R +E E+IH RWAML + F IL
Sbjct: 27 EQTPSYLTGEFPGDYGWETAGVSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNG 86
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP 168
+ G W +A GG YLG P V ++ I + + + FVE
Sbjct: 87 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFVEGYGVGGGPL 145
Query: 169 E---KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
K YPGGAF+PLG + DP E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 146 GEGLDKVYPGGAFEPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 204
Query: 226 NLATHLADPWHNN 238
NL H+ADP NN
Sbjct: 205 NLFDHVADPVANN 217
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 99/191 (51%), Gaps = 11/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE +RY+E ELIH RWAML + + +L
Sbjct: 54 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKF 113
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 171
G W +A GG YLG P V + ++ + + +E R + P +
Sbjct: 114 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR-VNGGPAGE 171
Query: 172 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
YPG +FDPLG + DP F E KVKEIKNGRLA + GF V Q+ G GP++NL
Sbjct: 172 GLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFV-QAIVTGKGPVQNL 230
Query: 228 ATHLADPWHNN 238
HLA+P NN
Sbjct: 231 DDHLANPTVNN 241
>gi|20794|emb|CAA41407.1| Type III chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 286
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 123/261 (47%), Gaps = 35/261 (13%)
Query: 6 LMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPG 65
L+ G A P SS+ FT S A++N K W + YLDGS PG
Sbjct: 27 LLLGGKALVLPPYFSQSSRRTSFTVRS-QASSNKPVKQGDRQLWFASDQSLSYLDGSLPG 85
Query: 66 DFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSSKFFWILVPEALG-LGNW 118
D+GFDPL L + PE + E E+I+ R+AML V + + PE LG LG
Sbjct: 86 DYGFDPLGLMD-PEGPGGFMEPGWLVYGEIINGRYAMLGAVGA-----IAPEILGKLGLI 139
Query: 119 VQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD--- 167
Q G GT W T+ V+E + F EH+R SM K
Sbjct: 140 PQETALPWFQTGVIPPAGTYNYWADPFTLFVLEMALMGFAEHRRLQDYRNPGSMGKQYFL 199
Query: 168 --------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 218
YPGG F+PLGF KD + +E K+KE+KNGRLA+LA +G+ + Q
Sbjct: 200 GLEKFLGGSGNPAYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFI-QGLV 258
Query: 219 PGTGPLENLATHLADPWHNNI 239
G GP +NL HLADP HNN
Sbjct: 259 TGVGPFQNLLDHLADPVHNNF 279
>gi|302756045|ref|XP_002961446.1| light-harvesting complex [Selaginella moellendorffii]
gi|302776390|ref|XP_002971365.1| light-harvesting complex [Selaginella moellendorffii]
gi|300161347|gb|EFJ27963.1| light-harvesting complex [Selaginella moellendorffii]
gi|300170105|gb|EFJ36706.1| light-harvesting complex [Selaginella moellendorffii]
Length = 250
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 125/247 (50%), Gaps = 39/247 (15%)
Query: 13 TTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPL 72
++ +P + ++ ++F +S+ A ++ + + + W+PG P +LDGS GDFGFDPL
Sbjct: 16 SSCYPRIRNAHCARF---LSIRAQSSGSDERPI---WLPGLSPPQHLDGSLAGDFGFDPL 69
Query: 73 RLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQA 132
LG+ PE L Y ++EL+H R+AM + ILV + L W +
Sbjct: 70 ELGKDPETLRWYVQAELVHSRFAMAGIAG-----ILVTDLLRTVGGRDLPVWYEAGATEF 124
Query: 133 TYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME---------KDP----------EKKKY 173
+ T T+ V++ + + + E +R + +D + Y
Sbjct: 125 EFADTR-------TLFVVQLILMGYAETRRYYDYISPGSQAAQDTFLGFEDALAGLQSGY 177
Query: 174 PGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 232
PGG F DP G +D K KE+KNGRLA++A +G V Q+ + TGP++NL TH++
Sbjct: 178 PGGPFFDPAGLGRDINNARTLKEKELKNGRLAMVAILGVFV-QAFFTKTGPIDNLLTHVS 236
Query: 233 DPWHNNI 239
DPWHN I
Sbjct: 237 DPWHNTI 243
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 103/200 (51%), Gaps = 33/200 (16%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P +LDGS PGDFGFDPL L PE+L ++EL+H RWAML I +PE L
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAG-----IFIPEFLTK 55
Query: 116 GNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD 167
+ W G Q + T T+ ++E + I + E +R + D
Sbjct: 56 LGILNTPSWYTA-GEQEYFTDT-------TTLFIVELVFIGWAEGRRWADILNPGCVNTD 107
Query: 168 P---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQS 216
P YPGG FDPLG+ S PQK +E + KEIKNGRLA+LA +G Q
Sbjct: 108 PIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQH- 166
Query: 217 AYPGTGPLENLATHLADPWH 236
Y GTGP++NL HLADP H
Sbjct: 167 IYTGTGPIDNLFAHLADPGH 186
>gi|209868185|gb|ACI90632.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis var. henryi]
gi|209868187|gb|ACI90633.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus hwangshanensis]
gi|209868189|gb|ACI90634.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis]
Length = 254
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 94/259 (36%), Positives = 121/259 (46%), Gaps = 41/259 (15%)
Query: 5 TLMSCGIATTAFPS-VLSSSKSKFFTAVSLPAAANA----------TSKYAMSADWMP-- 51
T+ SCGI + AF +SS K + + A + T K + SA P
Sbjct: 2 TMASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSASASTSPWY 61
Query: 52 ------------GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV 99
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML
Sbjct: 62 GPDRVLYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 120
Query: 100 VSSKFFWILVPEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSI 155
+ F +L + G W +A GG YLG P V ++ I + + +
Sbjct: 121 LGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILM 179
Query: 156 AFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFV 209
VE R DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ +
Sbjct: 180 GAVEGYRIAGGPLGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 236
Query: 210 GFCVQQSAYPGTGPLENLA 228
GF V Q+ G GP+ENLA
Sbjct: 237 GFFV-QAIVTGKGPIENLA 254
>gi|384247025|gb|EIE20513.1| light-harvesting complex I protein [Coccomyxa subellipsoidea C-169]
Length = 259
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 125/255 (49%), Gaps = 37/255 (14%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLD 60
+A ++L+ A A P+ S A + A + W PG P+LD
Sbjct: 5 VAMSSLLGSKSAVAARPAAFSGKARTARVQARFVAVSAADRQV-----WFPGNAPAPHLD 59
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQ 120
GS PGDFGFDPL LG P+ L+ ++++EL+H R AM AV IL P V
Sbjct: 60 GSLPGDFGFDPLSLGSDPQLLKWFQQAELVHGRTAMTAVAG-----ILFPAVATKAGVVN 114
Query: 121 AQEWAAVPGGQATYLGTP-VPWGTLPTILVIEFLSIAFVEHQRSME-KDPEKKK------ 172
+W G P P+ L L I+ + +VE +R ++ K+P +
Sbjct: 115 IPQW--YDAGSVWVQNNPNFPFAAL---LFIQIILTGWVETKRWLDFKNPGSQADGSFLG 169
Query: 173 -----------YPGGA-FDPLGFSKDPQ-KFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
YPGG FDP G S+ + + ++Y+ EIKNGRLA++AF+GF Q +A
Sbjct: 170 VTDDFKGVANGYPGGKLFDPFGLSRGSEGQLQKYQENEIKNGRLAMVAFLGFIAQHAA-T 228
Query: 220 GTGPLENLATHLADP 234
G GP++NLA HLA+P
Sbjct: 229 GKGPIDNLADHLANP 243
>gi|116783276|gb|ABK22868.1| unknown [Picea sitchensis]
Length = 233
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 117/240 (48%), Gaps = 56/240 (23%)
Query: 14 TAFPSVLSSSKSKFFT--AVSL-------PAAANATSKYAMSAD---WMPGEPRPPYLDG 61
T F + + ++K+ F AVSL P A A+ + W PG PP+LDG
Sbjct: 29 TVFANNVGAAKASFLVGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDG 88
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQA 121
S P DFGFDPL LG PE L+ +SEL+HCRWAML I +PE L
Sbjct: 89 SLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAG-----IFIPELL-------- 135
Query: 122 QEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDP 180
T LG IL + + + D YPGG FDP
Sbjct: 136 -----------TKLG----------ILNTD----PIFPNNKLTGTD---VGYPGGLWFDP 167
Query: 181 LGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
LG+ S P+K +E + KEIKNGRLA+L+ +G Q+ Y GTGP++NL HLADP H +
Sbjct: 168 LGWGSGSPEKIKELRTKEIKNGRLAMLSVMGAWF-QAEYTGTGPIDNLLAHLADPGHATV 226
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 102/194 (52%), Gaps = 24/194 (12%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML + SK+ +
Sbjct: 70 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVS 129
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
EA+ W +A GG YLG V ++ L + + + E R+
Sbjct: 130 FGEAV----WFKAGAQIFAEGG-LNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGG 184
Query: 167 ------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
DP +PGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 185 PLGEGLDP---LHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTG 240
Query: 221 TGPLENLATHLADP 234
GP+ENL+ HLA+P
Sbjct: 241 KGPIENLSDHLANP 254
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE +RY+E ELIH RWAML + +L +
Sbjct: 47 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIPF 106
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG V ++ L + + + E R+
Sbjct: 107 GEAVWFKAGSQIFAEGG-LNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEG 165
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP +PGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP++
Sbjct: 166 LDP---LHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIQ 221
Query: 226 NLATHLADPWHNN 238
NL HLA+P N
Sbjct: 222 NLDDHLANPTAVN 234
>gi|115773|sp|P04159.1|CB21_PEA RecName: Full=Chlorophyll a-b binding protein AB96; AltName:
Full=LHCII type I CAB-AB96; Short=LHCP; AltName:
Full=Major 15
gi|169051|gb|AAA33650.1| polypeptide 15 precursor, partial [Pisum sativum]
Length = 228
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 102/193 (52%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IH RWAML + F +L +
Sbjct: 29 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 88
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 89 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 147
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG ++ P+ F E KVKE+KNGRLA+ + GF V + G GPLE
Sbjct: 148 VDP---LYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFV-PAIVTGKGPLE 203
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 204 NLADHLADPVNNN 216
>gi|380504948|gb|AFD62761.1| LHCB, partial [Citrus sinensis]
Length = 169
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 97/150 (64%), Gaps = 9/150 (6%)
Query: 80 NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPV 139
L+R++E ELIH RWAML + + + EAL W A + V G ++YLG P+
Sbjct: 26 GLQRFRECELIHGRWAMLGTLGA-----IAVEALTGVAWQDAGKVELVEG--SSYLGQPL 78
Query: 140 PWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIK 199
P+ +L T++ IE + I ++E+QR+ E DP K+ YPGG FDPLG + DP K E ++ EIK
Sbjct: 79 PF-SLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIK 137
Query: 200 NGRLALLAFVGFCVQQSAYPGTGPLENLAT 229
+ RLA++AF+ F + Q+A+ G GP+ +AT
Sbjct: 138 HARLAMVAFLIFGI-QAAFTGKGPISFVAT 166
>gi|159484394|ref|XP_001700243.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158272559|gb|EDO98358.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 266
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 99/183 (54%), Gaps = 10/183 (5%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE +RY+E ELIH RWAML + F +L
Sbjct: 55 GEP-PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSY 113
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG P V ++ IL + L + +E R
Sbjct: 114 GVPFGEAVWFKAGAQIFQEGG-LDYLGNPNLVHAQSILAILGTQVLLMGAIEGYRVNGGP 172
Query: 167 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
+ K YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPL
Sbjct: 173 LGEGLDKLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPL 231
Query: 225 ENL 227
+NL
Sbjct: 232 QNL 234
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE +RY+E ELIH RWAML + +L +
Sbjct: 50 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIPF 109
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG + ++ L + + + E R+
Sbjct: 110 GEAVWFKAGAQIFAEGGL-NYLGNENLIHAQSIIATLAFQVVVMGLAEAYRANGGPLGEG 168
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP +PGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP++
Sbjct: 169 LDP---LHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIQ 224
Query: 226 NLATHLADPWHNN 238
NL HLA+P N
Sbjct: 225 NLDDHLANPTAVN 237
>gi|167997791|ref|XP_001751602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697583|gb|EDQ83919.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 98/193 (50%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL+G GD+G+D L E R +E E+IH RWAML + +L +
Sbjct: 68 PSYLNGEFAGDYGWDTAGLSSDLETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 127
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME------ 165
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 186
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 TDP---IYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 226 NLATHLADPWHNN 238
NL HLADP NN
Sbjct: 243 NLNDHLADPVANN 255
>gi|145079437|tpg|DAA05915.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Acetabularia acetabulum]
Length = 244
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 101/192 (52%), Gaps = 12/192 (6%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA--- 112
P YL G PGD+G+D L PE + Y+E ELIH RWAML + IL A
Sbjct: 45 PSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVS 104
Query: 113 LGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 170
LG W +A GG YLG P V ++ IL + + + +E R + P
Sbjct: 105 LGESVWFKAGSQIFQEGG-LDYLGNPSLVHAQSILAILGCQVVLMGLIEAYR-VNGGPLG 162
Query: 171 KK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
K +PG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+EN
Sbjct: 163 KGLDVLHPGEKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYV-QAIVTGKGPIEN 221
Query: 227 LATHLADPWHNN 238
A H+ADP+ N
Sbjct: 222 WAEHVADPFSVN 233
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 98/189 (51%), Gaps = 15/189 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE +RY+E ELIH RWAML + +L +
Sbjct: 30 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIPF 89
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG V ++ L + + + E R+
Sbjct: 90 GEAVWFKAGSQIFAEGG-LNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEG 148
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP +PGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP++
Sbjct: 149 LDP---LHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIQ 204
Query: 226 NLATHLADP 234
NL HLA+P
Sbjct: 205 NLDDHLANP 213
>gi|333691283|gb|AEF79974.1| chloroplast minor chlorophyll a-b binding protein of photosystem II
[Dunaliella salina]
Length = 283
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 110/224 (49%), Gaps = 37/224 (16%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-G 114
P YL+G GD+G+DPL LG+ E +E+Y+ +EL+H RWAMLA IL+PE L
Sbjct: 66 PEYLNGELAGDYGYDPLGLGKDEEQVEKYRANELLHARWAMLAAAG-----ILIPEGLQA 120
Query: 115 LGNWVQAQEW-----AAVPGGQATYLGTPVPWGT------LPTILVIEFLSIAFVEHQRS 163
G ++ W + GG Y VP+G L + +IE + + VE R
Sbjct: 121 NGADIKGGTWFETGAEMLNGGTLNYFA--VPFGVVQNPLPLAAVTLIEIVLLGAVEKFRV 178
Query: 164 MEKDPE-----------------KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALL 206
P + YPGG FDPL + DP+ F E +VKE KNGRLA++
Sbjct: 179 DGTGPAGFSPGVGKFDSDIFDGLDQLYPGGPFDPLNLADDPEVFAELQVKETKNGRLAMV 238
Query: 207 AFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP 250
+ F + QS G GP N H++DP+ N+ V+ VP
Sbjct: 239 GVLAFAI-QSYVTGEGPYANFTKHISDPFGYNLLTVLQGDDRVP 281
>gi|49388156|dbj|BAD25284.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|49388341|dbj|BAD25451.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|125538483|gb|EAY84878.1| hypothetical protein OsI_06243 [Oryza sativa Indica Group]
gi|125581168|gb|EAZ22099.1| hypothetical protein OsJ_05758 [Oryza sativa Japonica Group]
gi|215678980|dbj|BAG96410.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679371|dbj|BAG96511.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686386|dbj|BAG87647.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737482|dbj|BAG96612.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737505|dbj|BAG96635.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737512|dbj|BAG96642.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737560|dbj|BAG96690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737570|dbj|BAG96700.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737580|dbj|BAG96710.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737621|dbj|BAG96751.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737634|dbj|BAG96764.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737653|dbj|BAG96783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737729|dbj|BAG96859.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737785|dbj|BAG96915.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765646|dbj|BAG87343.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767462|dbj|BAG99690.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/236 (39%), Positives = 120/236 (50%), Gaps = 42/236 (17%)
Query: 37 ANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------S 87
A AT AD W + YLDG+ PGDFGFDPL L + PE + E
Sbjct: 36 AEATPPAKQGADRQLWFASKQSLSYLDGTLPGDFGFDPLGLSD-PEGTGGFIEPRWLAYG 94
Query: 88 ELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTL 144
E+ + R AM+ VV ++ PE LG V A+ A+P Q + GT W
Sbjct: 95 EVFNGRTAMMGVVG-----MVAPELLGKLGLVPAE--TAIPWFQTGVIPPAGTYTYWADP 147
Query: 145 PTILVIEFLSIAFVEHQR--------SMEKD-----------PEKKKYPGG-AFDPLGF- 183
T+ V E + F EH+R SM K + YPGG F+PLGF
Sbjct: 148 YTLFVFELALVGFAEHRRFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYPGGPLFNPLGFG 207
Query: 184 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+K + +E K+KEIKNGRLA+LAF+GF V Q+ + G GP++NL HLADP HNNI
Sbjct: 208 TKSEAEMKELKLKEIKNGRLAMLAFLGFSV-QALFTGVGPVQNLLDHLADPVHNNI 262
>gi|209868183|gb|ACI90631.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus bungeana]
Length = 254
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/259 (35%), Positives = 119/259 (45%), Gaps = 41/259 (15%)
Query: 5 TLMSCGIATTAFPS-VLSSSKSKFFTAVSLPAAANATSKYAMSAD-------------W- 49
T+ +CGI + AF LSS K + + A + S+ M W
Sbjct: 2 TMATCGIGSCAFAGGQLSSLKPHTNQLLGVGAGVHGESRVTMRKSATKKSFASASPSPWY 61
Query: 50 ----------MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV 99
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML
Sbjct: 62 GPDRVLYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 120
Query: 100 VSSKFFWILVPEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSI 155
+ F +L + G W +A GG YLG P + ++ I + + +
Sbjct: 121 LGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVILM 179
Query: 156 AFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFV 209
VE R DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ +
Sbjct: 180 GAVEGYRIAGGPLGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 236
Query: 210 GFCVQQSAYPGTGPLENLA 228
GF V Q+ G GP+ENLA
Sbjct: 237 GFFV-QAIVTGKGPIENLA 254
>gi|224131950|ref|XP_002321218.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
gi|118485656|gb|ABK94678.1| unknown [Populus trichocarpa]
gi|222861991|gb|EEE99533.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
Length = 274
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 119/253 (47%), Gaps = 50/253 (19%)
Query: 20 LSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE 79
+SS KS F AA+ K W + YLDGS PGDFGFDPL L + PE
Sbjct: 32 VSSRKSSFVVR----AASTPPVKQGNRQLWFASKQSLSYLDGSLPGDFGFDPLGLSD-PE 86
Query: 80 NLERYKE------SELIHCRWAMLAVVSSKFFWILVPEALGLGNWV---QAQEWAAV--- 127
+ E E+I+ R+AML V + + PE LG + A W
Sbjct: 87 GTGGFIEPKWLAYGEIINGRYAMLGAVGA-----IAPEILGKAGLIPPETALPWFRTGVI 141
Query: 128 -PGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD----------- 167
P G +Y P T+ V E + F EH+R SM K
Sbjct: 142 PPAGTYSYWADPY------TLFVFEMALMGFAEHRRLQDWAKPGSMGKQYFLGFEKYLGG 195
Query: 168 PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
+ YPGG F+PLGF KD + ++ K+KE+KNGRLA+LA +G+ V Q G GP +N
Sbjct: 196 SGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQN 254
Query: 227 LATHLADPWHNNI 239
L HLADP HNNI
Sbjct: 255 LLDHLADPVHNNI 267
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 105/199 (52%), Gaps = 20/199 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFF 105
+ P YL G PGD+G+D L PE Y+E ELIH RWAML + SK+
Sbjct: 48 DDTPSYLTGEFPGDYGWDTAGLSADPETFASYRELELIHARWAMLGALGCVTPELLSKYA 107
Query: 106 WILVPEALGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRS 163
+ EA+ W +A GG YLG V ++ IL + + + E R
Sbjct: 108 GVEFGEAV----WFKAGAQIFADGG-LDYLGNSSLVHAQSILAILGCQVVLMGGAEAFRV 162
Query: 164 ----MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
+ +D +K +PGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 163 NGGPLGEDLDKL-HPGGAFDPLGLADDPDTFSELKVKEIKNGRLAMFSMFGFFV-QAIVT 220
Query: 220 GTGPLENLATHLADPWHNN 238
G GP+EN A H+ADP +N
Sbjct: 221 GKGPVENWAEHIADPSGSN 239
>gi|118489937|gb|ABK96765.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 274
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 119/253 (47%), Gaps = 50/253 (19%)
Query: 20 LSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE 79
+SS KS F AA+ K W + YLDGS PGDFGFDPL L + PE
Sbjct: 32 VSSRKSSFVVR----AASTPPVKQGNRQLWFASKQSLSYLDGSLPGDFGFDPLGLSD-PE 86
Query: 80 NLERYKE------SELIHCRWAMLAVVSSKFFWILVPEALGLGNWV---QAQEWAAV--- 127
+ E E+I+ R+AML V + + PE LG + A W
Sbjct: 87 GTGGFIEPKWLAYGEIINGRYAMLGAVGA-----IAPEILGKAGLIPPETALPWFRTGVI 141
Query: 128 -PGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD----------- 167
P G +Y P T+ V E + F EH+R SM K
Sbjct: 142 PPAGTYSYWADPY------TLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGFEKYLGG 195
Query: 168 PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
+ YPGG F+PLGF KD + ++ K+KE+KNGRLA+LA +G+ V Q G GP +N
Sbjct: 196 SGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQN 254
Query: 227 LATHLADPWHNNI 239
L HLADP HNNI
Sbjct: 255 LLDHLADPVHNNI 267
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 96/184 (52%), Gaps = 15/184 (8%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IHCRWAML + F IL
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNG 122
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I ++ + + FVE R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPL 181
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---IYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 223 PLEN 226
P+EN
Sbjct: 238 PIEN 241
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 98/189 (51%), Gaps = 15/189 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE +RY+E ELIH RWAML + +L +
Sbjct: 50 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIPF 109
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG + ++ L + + + E R+
Sbjct: 110 GEAVWFKAGAQIFAEGGL-NYLGNENLIHAQSIIATLAFQVVVMGLAEAYRANGGPLGEG 168
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP +PGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP++
Sbjct: 169 LDP---LHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIQ 224
Query: 226 NLATHLADP 234
NL HLA+P
Sbjct: 225 NLDDHLANP 233
>gi|145350546|ref|XP_001419664.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144579896|gb|ABO97957.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 235
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 122/255 (47%), Gaps = 56/255 (21%)
Query: 7 MSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGD 66
+S I++TA ++K++ A P A +A + + W PG+ +LDGS PGD
Sbjct: 3 VSMRISSTAGLKTRVATKTR---ASRGPVAVSANADRPV---WYPGKAPAAHLDGSLPGD 56
Query: 67 FGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL------GLGNWVQ 120
+GFDPL L PE + ++EL H RWAML V + PE L L NWV
Sbjct: 57 YGFDPLSLSADPEMRQWMVQAELQHARWAMLGVAG-----CVAPELLTKIGVADLPNWVD 111
Query: 121 A---QEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP- 168
A Q WA PGG T+ I+ + E +R S+ DP
Sbjct: 112 AATYQYWA--PGG---------------TLFFIQMAMFNWAEIRRWQDMKNPGSVNTDPL 154
Query: 169 ---------EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
YP G FD G++KD + E K+KEIKNGRLA+LAF+G C Q
Sbjct: 155 FGYNSNDTNTDVGYPKGLFDKFGWAKDEKTTAELKLKEIKNGRLAMLAFLGICAQY-VQT 213
Query: 220 GTGPLENLATHLADP 234
G GP+ENL +H+ +P
Sbjct: 214 GVGPVENLFSHMGNP 228
>gi|356568441|ref|XP_003552419.1| PREDICTED: chlorophyll a-b binding protein CP29.3,
chloroplastic-like [Glycine max]
Length = 278
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 114/225 (50%), Gaps = 53/225 (23%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPL-----------RLGEVPENL---------------- 81
W P P +LDGS GD GFDP L + +NL
Sbjct: 60 WFPNAEPPEWLDGSMIGDRGFDPFGFAKPAEYLQFDLDSLDQNLAKNVAGDVIGTRVEVA 119
Query: 82 ----------------ERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
+R++E ELIH RWAML + + LV EAL W A +
Sbjct: 120 DVKPTPFQPYSEVFGIQRFRECELIHGRWAMLGALGA-----LVVEALTGVAWQDAGKVE 174
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFS 184
V G ++YLG P+P+ +L T++ IE + I ++E QR+ E DPEK+ YPGG FDPLG +
Sbjct: 175 LVEG--SSYLGLPLPF-SLTTLIWIEVIVIGYIEFQRNAELDPEKRLYPGGRFFDPLGLA 231
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 229
DP++ ++ EIK+ RLA++ F+ F + Q+A G GP+ LAT
Sbjct: 232 NDPEEKARLQLAEIKHSRLAMVVFLIFAI-QAAVTGKGPISFLAT 275
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 101/192 (52%), Gaps = 20/192 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL G PGD+G+D L P Y+E+E+IH RWAML + +K+ +
Sbjct: 146 PSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAMLGALGCVTPELLAKYSGVP 205
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
+ E + W +A GG YLG P V ++ IL + + + E R +
Sbjct: 206 IAEPV----WFKAGSQIFAEGG-LDYLGNPSLVHAQSILAILACQVILMGGAEAYR-VNG 259
Query: 167 DPEKKKY----PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
P + PGGAFDPLG + DP F E KVKEIKNGRLA+ + +GF VQ A G G
Sbjct: 260 GPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMLGFYVQAIA-TGKG 318
Query: 223 PLENLATHLADP 234
P+EN A H+ADP
Sbjct: 319 PVENWAEHIADP 330
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 102/196 (52%), Gaps = 20/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL G PGD+G+D L P Y+E+E+IH RWAML + +K+ +
Sbjct: 133 PSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAMLGALGCVTPELLAKYSGVP 192
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
+ E + W +A GG YLG P V ++ IL + + + E R +
Sbjct: 193 IAEPV----WFKAGSQIFAEGGL-DYLGNPSLVHAQSILAILACQVILMGGAEAYR-VNG 246
Query: 167 DPEKKKY----PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
P + PGGAFDPLG + DP F E KVKEIKNGRLA+ + +GF VQ A G G
Sbjct: 247 GPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMLGFYVQAIA-TGKG 305
Query: 223 PLENLATHLADPWHNN 238
P+EN A H+ADP N
Sbjct: 306 PVENWAEHIADPAGVN 321
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 107/199 (53%), Gaps = 25/199 (12%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P Y++G GD+G+DPL LG +E+Y+ E++H RWAML VV +LVPE L
Sbjct: 78 PAYMNGELAGDYGYDPLGLGN-KGGVEKYRPYEVLHGRWAMLGVVG-----MLVPEGLYA 131
Query: 114 -GLGNWVQAQEW--AAV---PGGQATYLGTPVPWGTLPTILVIEFLSIAF--VEHQRSME 165
G N A W AV P T+ G P P +P L + F F +E+ R +
Sbjct: 132 NGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNP---VPLALAVIFEVAVFFLIENYRYQQ 188
Query: 166 KDPEKKK----YPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
P YPGG FDPLG + DP K +E KVKEIKNGRLA++AF+GF VQ
Sbjct: 189 DGPWGTGLDPLYPGGKYFDPLGLASDPSKADELKVKEIKNGRLAMMAFLGFVVQYFVTK- 247
Query: 221 TGPLENLATHLADPWHNNI 239
GP N + HLADP+ N
Sbjct: 248 EGPYANWSKHLADPFGYNF 266
>gi|412988961|emb|CCO15552.1| predicted protein [Bathycoccus prasinos]
Length = 231
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 110/200 (55%), Gaps = 30/200 (15%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+P P YLDG+ GD+GFDPL LG PE L+ Y+E+EL++ RWAM+AV I
Sbjct: 50 LPNIKTPDYLDGTIAGDYGFDPLGLGSDPERLKYYQEAELMNARWAMMAVAG-----ICT 104
Query: 110 PEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR-----SM 164
EALG +Q++ + A GQ Y G P+ L + F ++ F+E +R +
Sbjct: 105 TEALG----IQSKWYMA---GQEDY-GFPI-----NAQLAVLFPTMGFLETKRITGWLAT 151
Query: 165 EKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
K + +P FDPLG D + K+KEIKNGR A++AFVG CVQ GPL
Sbjct: 152 GKSGINETFP---FDPLGMGADS---DSMKLKEIKNGRAAMIAFVGICVQALVLR-EGPL 204
Query: 225 ENLATHLADPWHNNIGDVII 244
L H+A+P+ NN+ ++
Sbjct: 205 AALQDHVANPFGNNLATNVM 224
>gi|75220641|sp|Q32904.1|CB23_PEA RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type III CAB-3; Flags: Precursor
gi|309673|gb|AAA84545.1| light harvesting protein [Pisum sativum]
Length = 275
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/280 (35%), Positives = 133/280 (47%), Gaps = 53/280 (18%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMP-----GEPR 55
MA+ L+S T A +V S F A SLP++ + K + A P G R
Sbjct: 1 MATQALVSSSSLTFAAEAVRQS-----FRARSLPSSVGCSRKGLVRAAATPPVKQGGVDR 55
Query: 56 P---------PYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVV 100
P YLDGS PGD+GFDPL L + PE + E E+I+ R+AML V
Sbjct: 56 PLWFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEVINGRFAMLGAV 114
Query: 101 SSKFFWILVPEALG-LGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVE 159
+ + PE LG +G Q A G GT W T+ V+E + F E
Sbjct: 115 GA-----IAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAE 169
Query: 160 HQR--------SMEKD-----------PEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIK 199
H+R SM K YPGG F +PLGF KD + +E K+KE+K
Sbjct: 170 HRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVK 229
Query: 200 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
NGRLA+LA +G+ + Q G GP +NL H+ADP +NN+
Sbjct: 230 NGRLAMLAILGYFI-QGLVTGVGPYQNLLDHVADPVNNNV 268
>gi|87313213|gb|ABD37903.1| light-harvesting chlorophyll-a/b binding protein Lhca1
[Chlamydomonas incerta]
Length = 233
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 109/201 (54%), Gaps = 33/201 (16%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
WMPG P YL+G+ PGDFGFDPL LG+ P L+ Y ++EL++ R+AMLAV IL
Sbjct: 47 WMPGADLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAG-----IL 101
Query: 109 VPEAL-GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR----- 162
VPE L +G A G+ Y ++ ++ L A+VE +R
Sbjct: 102 VPELLSNIGFSWPGAGVAWYDAGKFEYFAPA------SSLFGVQMLLFAWVEIRRYQDFV 155
Query: 163 ---SMEKDP----------EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFV 209
S +DP + YPGG FDP G+SK K K+KEIKNGRLA+LAF
Sbjct: 156 KPGSANQDPIFTNNKLPDGNEPGYPGGIFDPFGWSKGDIK--SLKLKEIKNGRLAMLAFA 213
Query: 210 GFCVQQSAYPGTGPLENLATH 230
GF + Q+ GT PL+NL+TH
Sbjct: 214 GF-IGQAYTTGTTPLKNLSTH 233
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 97/191 (50%), Gaps = 11/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G GD+G+D L PE RY+E ELIH RWAML + +L +
Sbjct: 57 PGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALGCITPELLAKNGVPF 116
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 171
G W +A GG YLG + ++ L + + + VE R + P +
Sbjct: 117 GEAVWFKAGAQIFQEGG-LNYLGNSSLIHAQSILATLACQVILMGLVEGYR-VNGGPAGE 174
Query: 172 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
YPG AFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+ NL
Sbjct: 175 GLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGQGPIANL 233
Query: 228 ATHLADPWHNN 238
HL+DP NN
Sbjct: 234 DAHLSDPSGNN 244
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 101/192 (52%), Gaps = 20/192 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL G PGD+G+D L P Y+E+E+IH RWAML + SK+ +
Sbjct: 130 PSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLGALGCVTPELLSKYSGVP 189
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
+ E + W +A GG YLG P + ++ IL + + + E R +
Sbjct: 190 IAEPV----WFKAGSQIFAEGG-LDYLGNPSLIHAQSILAILACQVVLMGGAEAYR-VNG 243
Query: 167 DPEKKKY----PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
P + PGGAFDPLG + DP F E KVKEIKNGRLA+ + +GF VQ A G G
Sbjct: 244 GPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMLGFYVQAIA-TGKG 302
Query: 223 PLENLATHLADP 234
P+EN A H+ADP
Sbjct: 303 PVENWAEHIADP 314
>gi|255070403|ref|XP_002507283.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522558|gb|ACO68541.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 247
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 107/196 (54%), Gaps = 32/196 (16%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W+PG PPYLDG+ GD+GFDPLRLG P+ L +E+EL++ RWAM A IL
Sbjct: 38 WLPGTQPPPYLDGTMAGDYGFDPLRLGANPDTLPYLQEAELMNGRWAMHATAG-----IL 92
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR-----S 163
+A+GL W +A E A LG W L T++ + + +AF+E R +
Sbjct: 93 FTDAVGLPKWWEAGEAA---------LGD---W-NLQTLVAFQVVIMAFLEAARIRGFMT 139
Query: 164 MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
+ +P FDP G Q E +VKE+KNGRLA+++F+G V Q A GT P
Sbjct: 140 TGQSGVIGNFP---FDPTG-----QDSPEMRVKEVKNGRLAMMSFLGM-VSQYAVTGTSP 190
Query: 224 LENLATHLADPWHNNI 239
LE L H+A+P NI
Sbjct: 191 LEGLKAHMANPAGVNI 206
>gi|87313217|gb|ABD37905.1| light-harvesting chlorophyll-a/b binding protein Lhca3
[Chlamydomonas incerta]
Length = 245
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 110/221 (49%), Gaps = 36/221 (16%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P YL G GD+G+DPL LG P L+ Y++SEL H RWAML V I+
Sbjct: 23 WAPGVVAPEYLKGELAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGVAGVLVQEIV 82
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
P+ G L P + +L EF+ + +VE +R
Sbjct: 83 KPDVY------------FYEAGLPQNLPEPFTNINMGGLLAWEFILMHWVEVRRWQDYKN 130
Query: 163 --SMEKDPEKK---------KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGF 211
S+ +DP K YPGG FDP GFSK F+E + KEIKNGRLA++A++ F
Sbjct: 131 FGSVNEDPIFKGNKVPNPEMGYPGGIFDPFGFSKG--DFKELQTKEIKNGRLAMIAYMAF 188
Query: 212 CVQQSAYPGTGPLENLATHLADPWHN----NIGDVIIPRGI 248
+Q A G GPL L+ HL++P+ N NIG +P +
Sbjct: 189 ILQAQA-TGKGPLAALSAHLSNPFGNNILKNIGTCTVPHSV 228
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 97/191 (50%), Gaps = 11/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G GD+G+D L PE RY+E ELIH RWAML + +L +
Sbjct: 56 PGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALGCITPELLAKNGVPF 115
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 171
G W +A GG YLG + ++ L + + + VE R + P +
Sbjct: 116 GEAVWFKAGAQIFQEGG-LNYLGNSSLIHAQSILATLACQVILMGLVEGYR-VNGGPAGE 173
Query: 172 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
YPG AFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+ NL
Sbjct: 174 GLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGQGPIANL 232
Query: 228 ATHLADPWHNN 238
HL+DP NN
Sbjct: 233 DAHLSDPSGNN 243
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 101/196 (51%), Gaps = 20/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE +RY+E ELIH RWAML + + PE L
Sbjct: 69 PAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHARWAMLGALGC-----ITPELLAK 123
Query: 116 GN-------WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSM-- 164
W +A GG YLG P V ++ L ++ + + +E R
Sbjct: 124 NGTPIVEPVWFKAGAQIFAEGG-LDYLGNPGLVHAQSILATLAVQVILMGAIEGYRVNGG 182
Query: 165 -EKDPEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
+ K +PGG FDPLG ++DP F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 183 PAGEGLDKLHPGGQFFDPLGLAEDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 241
Query: 223 PLENLATHLADPWHNN 238
PL NL HLA P+ +N
Sbjct: 242 PLANLDEHLASPFTSN 257
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 102/196 (52%), Gaps = 20/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D L PE RY+E E+IH RWAML + + PE L
Sbjct: 45 PSYLKGEYPGDYGWDTAGLSADPETFSRYRELEVIHARWAMLGALGC-----VTPELLQK 99
Query: 114 -GLGNWVQAQEWAA----VPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
G N+ +A + A G YLG V ++ +L+ + + + +E R +
Sbjct: 100 NGAANFGEAVWFKAGAQIFQDGGLDYLGNANLVHAQSIVAVLLTQIVLMGLIEGYR-VNG 158
Query: 167 DPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
P + YPG AFDPLG + DP E KVKEIKNGRLA+++ GF + Q+ G G
Sbjct: 159 GPAGEITDPIYPGEAFDPLGLADDPDTLAELKVKEIKNGRLAMVSMFGFFI-QAIVTGKG 217
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLA P N
Sbjct: 218 PIENLNDHLAAPGETN 233
>gi|12582|emb|CAA48410.1| light harvesting chlorophyll a /b binding protein [Hedera helix]
Length = 193
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/186 (41%), Positives = 101/186 (54%), Gaps = 16/186 (8%)
Query: 64 PGDFGFDPLR-LGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGN--WVQ 120
PGD+G+D R L PE + +E E+IH RWAML + F +L + G W +
Sbjct: 1 PGDYGWDTSRGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFK 60
Query: 121 AQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK------DPEKKK 172
A GG YLG P V ++ I + + + VE R DP
Sbjct: 61 AGAQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---L 116
Query: 173 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 232
YPGG+FDPLG ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLENLA HLA
Sbjct: 117 YPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLA 175
Query: 233 DPWHNN 238
DP +NN
Sbjct: 176 DPVNNN 181
>gi|145079101|tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 103/189 (54%), Gaps = 12/189 (6%)
Query: 59 LDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVP---EALGL 115
L G PGD+G+D L PE ++Y+E+ELIH RWAML + IL + G
Sbjct: 1 LTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILARYGGTSFGE 60
Query: 116 GNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK- 172
W +A GG YLG+P + ++ I++ + + + +E R + P +
Sbjct: 61 SVWFRAGAQIFKDGG-LDYLGSPALIHAQSIGAIVISQVILMGLIEGYR-VNGGPAGEGL 118
Query: 173 ---YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 229
YPG +FDPLG + DP F E K+KEIKNGRLA+ + GF V Q+ G GP+EN A
Sbjct: 119 DPLYPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYV-QAIVTGKGPVENWAE 177
Query: 230 HLADPWHNN 238
H+ADP+ N
Sbjct: 178 HVADPFTAN 186
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 102/205 (49%), Gaps = 22/205 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D L PE RY+E E+IH RWAML + + PE L
Sbjct: 46 PSYLKGEYPGDYGWDTAGLSADPETFARYRELEVIHARWAMLGALG-----CVTPELLQN 100
Query: 114 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
G W +A GG YLG P + ++ +L+ + + +E R +
Sbjct: 101 NGVASFGEAVWFKAGAQIFQEGG-LDYLGNPSLIHAQSIVAVLLTQLTLMGLIEGYR-VN 158
Query: 166 KDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
P + YPG AFDPLG + DP F E KVKE+KNGRLA+++ GF V Q
Sbjct: 159 GGPAGEGLDALYPGEAFDPLGLADDPDTFSELKVKELKNGRLAMVSMFGFFV-QGIVTKK 217
Query: 222 GPLENLATHLADPWHNNIGDVIIPR 246
GP+ENL HLA P N + P+
Sbjct: 218 GPIENLNDHLASPDATNFWAIYAPK 242
>gi|21554335|gb|AAM63442.1| PSI type III chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
Length = 273
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 110/220 (50%), Gaps = 38/220 (17%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSS 102
W YLDGS PGD+GFDPL L + PE + E E+I+ R+AML +
Sbjct: 56 WFASSQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGA 114
Query: 103 KFFWILVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVE 159
+ PE LG + A+ A+P Q + GT W T+ V+E + F E
Sbjct: 115 -----IAPEILGKAGLIPAE--TALPXXQTGVIPPAGTYTYWADNYTLFVLEMALMGFAE 167
Query: 160 HQR--------SMEKD-----------PEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIK 199
H+R SM K YPGG F +PLGF KD + +E K+KE+K
Sbjct: 168 HRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVK 227
Query: 200 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
NGRLA+LA +G+ + Q G GP +NL HLADP +NN+
Sbjct: 228 NGRLAMLAILGYFI-QGLVTGVGPYQNLLDHLADPVNNNV 266
>gi|430947|gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 123/249 (49%), Gaps = 38/249 (15%)
Query: 20 LSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE 79
++S+ K + V AAA + A W+ YLDGS PGD+GFDPL L + PE
Sbjct: 27 VASASQKKSSFVVKAAAAPPVKQGANRPLWVASSQSLSYLDGSLPGDYGFDPLGLSD-PE 85
Query: 80 NLERYKE------SELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQAT 133
+ E E+I+ R+AML + + PE LG + A+ A+P Q
Sbjct: 86 GTGGFIEPRWLAYGEIINGRFAMLGAAGA-----IAPEILGKAGLIPAE--TALPWFQTG 138
Query: 134 YL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD-----------PEKK 171
+ GT W T+ V+E + F EH+R SM K
Sbjct: 139 VIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNP 198
Query: 172 KYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATH 230
YPGG F +PLGF KD + +E K+KE+KNGRLA+LA +G+ + Q G GP +NL H
Sbjct: 199 AYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFI-QGLVTGVGPYQNLLDH 257
Query: 231 LADPWHNNI 239
LADP +NN+
Sbjct: 258 LADPVNNNV 266
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 102/196 (52%), Gaps = 20/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL G PGD+G+D L P Y+E+E+IH RWAML + +K+ +
Sbjct: 146 PSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLGTLGCVTPELLAKYSGVP 205
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
+ E + W +A GG YLG P V ++ IL + + + E R +
Sbjct: 206 IAEPV----WFKAGSQIFAEGG-LDYLGNPSLVHAQSILAILACQVILMGGAEAYR-VNG 259
Query: 167 DPEKKKY----PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
P + PGGAFDPLG + DP F E KVKEIKNGRLA+ + +GF V Q+ G G
Sbjct: 260 GPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMLGFYV-QAISTGKG 318
Query: 223 PLENLATHLADPWHNN 238
P+EN A H+ADP N
Sbjct: 319 PVENWAEHIADPSGVN 334
>gi|302810440|ref|XP_002986911.1| light-harvesting complex [Selaginella moellendorffii]
gi|300145316|gb|EFJ11993.1| light-harvesting complex [Selaginella moellendorffii]
Length = 267
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 98/193 (50%), Gaps = 9/193 (4%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE + +E E+IH RWAML + +L
Sbjct: 65 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNG 124
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 166
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 125 IKFGEAVWFKAGSQIFKEGG-LDYLGNPNLVHAQSILAIWASQVILMGAVEGYRVGGGPL 183
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ K YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF Q+ G GP+E
Sbjct: 184 GEGLDKIYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFT-QAIVTGKGPIE 242
Query: 226 NLATHLADPWHNN 238
NL HL +P NN
Sbjct: 243 NLLDHLDNPTVNN 255
>gi|159489490|ref|XP_001702730.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158280752|gb|EDP06509.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 109/221 (49%), Gaps = 36/221 (16%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P YL G GD+G+DPL LG P L+ Y++SEL H RWAML V I+
Sbjct: 35 WAPGVVAPEYLKGDLAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGVAGVLVQEIV 94
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
P+ G L P + +L EF+ + +VE +R
Sbjct: 95 KPDVY------------FYEAGLPQNLPEPFTNINMGGLLAWEFILMHWVEVRRWQDYKN 142
Query: 163 --SMEKDPEKK---------KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGF 211
S+ +DP K YPGG FDP GFSK +E + KEIKNGRLA++A++ F
Sbjct: 143 FGSVNEDPIFKGNKVPNPEMGYPGGIFDPFGFSKG--NLKELQTKEIKNGRLAMIAYMAF 200
Query: 212 CVQQSAYPGTGPLENLATHLADPWHN----NIGDVIIPRGI 248
+Q A G GPL L+ HL++P+ N NIG +P +
Sbjct: 201 ILQAQA-TGKGPLAALSAHLSNPFGNNILKNIGTCTVPHSV 240
>gi|116519121|gb|ABJ99590.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 123/255 (48%), Gaps = 49/255 (19%)
Query: 18 SVLSSSKSKFFT-AVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGE 76
S SS K+ F A S P + W + YLDGS PGDFGFDPL L +
Sbjct: 30 SFSSSRKASFVVKAASTPPVKQGADRQL----WFASKQSLSYLDGSLPGDFGFDPLGLSD 85
Query: 77 VPENLERYKE------SELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGG 130
PE + E E+I+ R+AML V + + PE LG + + A+P
Sbjct: 86 -PEGTGGFIEPKWLAYGEIINGRYAMLGVAGA-----IAPEILGKLGLIPPE--TALPWF 137
Query: 131 QATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEK------------- 166
Q + GT W T+ V+E + F EH+R SM K
Sbjct: 138 QTGVIPPAGTYSYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGFEKFLGGS 197
Query: 167 -DPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
DP YPGG F+PLGF KD + +E K+KE+KNGRLA+LA +GF + Q G GP
Sbjct: 198 GDPA---YPGGPIFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGFFI-QGLVTGVGPF 253
Query: 225 ENLATHLADPWHNNI 239
+NL HLADP +NN+
Sbjct: 254 QNLLDHLADPVNNNV 268
>gi|116519125|gb|ABJ99591.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 123/255 (48%), Gaps = 49/255 (19%)
Query: 18 SVLSSSKSKFFT-AVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGE 76
S SS K+ F A S P + W + YLDGS PGDFGFDPL L +
Sbjct: 30 SFSSSRKASFVVKAASTPPVKQGADRQL----WFASKQSLSYLDGSLPGDFGFDPLGLSD 85
Query: 77 VPENLERYKE------SELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGG 130
PE + E E+I+ R+AML V + + PE LG + + A+P
Sbjct: 86 -PEGTGGFIEPKWLAYGEIINGRYAMLGVAGA-----IAPEILGKLGLIPPE--TALPWF 137
Query: 131 QATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEK------------- 166
Q + GT W T+ V+E + F EH+R SM K
Sbjct: 138 QTGVIPPAGTYSYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGFEKFLGGS 197
Query: 167 -DPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
DP YPGG F+PLGF KD + +E K+KE+KNGRLA+LA +GF + Q G GP
Sbjct: 198 GDPA---YPGGPIFNPLGFGKDERSMKELKLKEVKNGRLAMLAILGFFI-QGLVTGVGPF 253
Query: 225 ENLATHLADPWHNNI 239
+NL HLADP +NN+
Sbjct: 254 QNLLDHLADPVNNNV 268
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 102/196 (52%), Gaps = 20/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL G PGD+G+D L P Y+E+E+IH RWAML + +K+ +
Sbjct: 145 PSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLGTLGCVTPELLAKYSGVP 204
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
+ E + W +A GG YLG P V ++ IL + + + E R +
Sbjct: 205 IAEPV----WFKAGSQIFAEGG-LDYLGNPSLVHAQSILAILACQVILMGGAEAYR-VNG 258
Query: 167 DPEKKKY----PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
P + PGGAFDPLG + DP F E KVKEIKNGRLA+ + +GF V Q+ G G
Sbjct: 259 GPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMLGFYV-QAISTGKG 317
Query: 223 PLENLATHLADPWHNN 238
P+EN A H+ADP N
Sbjct: 318 PVENWAEHIADPSGVN 333
>gi|169061|gb|AAA33655.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 194
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 100/185 (54%), Gaps = 15/185 (8%)
Query: 64 PGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGN--WVQA 121
PGD+G+D L PE + +E E+IH RWAML + F +L + G W +A
Sbjct: 3 PGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKA 62
Query: 122 QEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK------DPEKKKY 173
GG YLG P V ++ T+ + + + VE R DP Y
Sbjct: 63 GSQIFSEGG-LDYLGNPSLVHAQSILTVWATQVILMGAVEGYRIAGGPLGEVVDP---LY 118
Query: 174 PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 233
PGG+FDPLG ++ P+ F E KVKE+KNGRLA+ + GF V Q+ G GP+ENLA HLAD
Sbjct: 119 PGGSFDPLGLAEIPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLAD 177
Query: 234 PWHNN 238
P +NN
Sbjct: 178 PVNNN 182
>gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 122/252 (48%), Gaps = 40/252 (15%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77
S +S S ++ + V A+ + A W + YLDGS PGDFGFDPL L +
Sbjct: 25 SRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGSLPGDFGFDPLGLSD- 83
Query: 78 PENLERYKE------SELIHCRWAMLAVVSSKFFWILVPEALGLGNWV-QAQEWAAVPGG 130
PE + E E+I+ R+AML + + PE LG + Q A G
Sbjct: 84 PEGTGGFIEPKWLAYGEVINGRFAMLGAAGA-----IAPEILGKAGLIPQETALAWFQTG 138
Query: 131 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEK--------------DP 168
GT W T+ V+E + F EH+R SM K DP
Sbjct: 139 VIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDP 198
Query: 169 EKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
YPGG F+PLGF KD + +E K+KEIKNGRLA+LA +G+ + Q+ G GP +NL
Sbjct: 199 A---YPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFI-QALVTGVGPYQNL 254
Query: 228 ATHLADPWHNNI 239
HLADP +NN+
Sbjct: 255 LDHLADPVNNNV 266
>gi|87313187|gb|ABD37890.1| light-harvesting chlorophyll-a/b binding protein Lhcb4 [Mesostigma
viride]
gi|145079643|tpg|DAA05922.1| TPA_inf: chloroplast light-harvesting complex protein CP29
precursor Lhcb4 [Mesostigma viride]
Length = 306
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 122/244 (50%), Gaps = 66/244 (27%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRL-----------------------GEV-------- 77
++PG P YLDGS GD+G+D L L GE+
Sbjct: 79 FLPGITPPAYLDGSMIGDYGYDILGLAAPKEFLQYDVDGNDINAAVSAPGEIIGTIKKTG 138
Query: 78 PE-------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEW 124
PE ++ER++E+ELI+ RWAML V + L E NWV +
Sbjct: 139 PEVDATPFQPYAEVFSIERFRETELINGRWAMLGVAGA-----LAGEMQTGINWVDIGKV 193
Query: 125 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 184
G +++ G P+PW T+ +++IE + + + E R+ E DPEK+ YPGG FDP GF+
Sbjct: 194 MLEQG--SSFGGLPLPW-TMTQLVIIEVVLVGWAEILRNNELDPEKRLYPGGPFDPFGFT 250
Query: 185 KDPQ-KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
K + + + K+ EIK+ RL ++A +GF VQ AY G GP++NLA DV+
Sbjct: 251 KASESRVNDLKLAEIKHARLGMMASLGFAVQY-AYTGAGPIKNLA------------DVL 297
Query: 244 IPRG 247
I RG
Sbjct: 298 IGRG 301
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 109/203 (53%), Gaps = 25/203 (12%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P Y++G GD+G+DPL LG +E+Y+ E++H RWAML VV +LVPE L
Sbjct: 85 PAYMNGELAGDYGYDPLGLGN-KGGVEKYRPYEVLHGRWAMLGVVG-----MLVPEGLYA 138
Query: 114 -GLGNWVQAQEW--AAV---PGGQATYLGTPVPWGTLPTILVIEFLSIAF--VEHQRSME 165
G N A W AV P T+ G P P +P L + F F +E+ R +
Sbjct: 139 NGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNP---VPLALAVIFEVAVFFLIENYRYQQ 195
Query: 166 KDPEKKK----YPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
P YPGG FDPLG + DP K +E KVKEIKNGRLA++AF+GF VQ
Sbjct: 196 DGPWGTGLDPLYPGGKYFDPLGLASDPSKADELKVKEIKNGRLAMMAFLGFVVQYFVTK- 254
Query: 221 TGPLENLATHLADPWHNNIGDVI 243
GP N + HLADP+ N ++
Sbjct: 255 EGPYANWSKHLADPFGYNFLTIL 277
>gi|209868193|gb|ACI90636.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus massoniana]
Length = 233
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 98/187 (52%), Gaps = 16/187 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 53 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 111
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 112 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 170
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 171 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 226
Query: 222 GPLENLA 228
GP+ENLA
Sbjct: 227 GPIENLA 233
>gi|116791821|gb|ABK26121.1| unknown [Picea sitchensis]
gi|224284036|gb|ACN39756.1| unknown [Picea sitchensis]
gi|224284482|gb|ACN39975.1| unknown [Picea sitchensis]
gi|224284909|gb|ACN40184.1| unknown [Picea sitchensis]
gi|224285218|gb|ACN40335.1| unknown [Picea sitchensis]
gi|224285824|gb|ACN40626.1| unknown [Picea sitchensis]
Length = 289
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 118/246 (47%), Gaps = 34/246 (13%)
Query: 21 SSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPEN 80
SS S+ AV A++ K W + YLDGS PGD+GFDPL L + PE
Sbjct: 43 SSESSRTSFAVRSQASSGKPVKQGDRQLWFASKQSLSYLDGSLPGDYGFDPLGLMD-PEG 101
Query: 81 LERYKE------SELIHCRWAMLAVVSSKFFWILVPEALG-LGNWVQAQEWAAVPGGQAT 133
+ E E+I+ R+AML V + + PE LG LG Q G
Sbjct: 102 PGGFIEPGWLAYGEIINGRYAMLGAVGA-----IAPEILGKLGLIPQETALPWFRTGVIP 156
Query: 134 YLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD-----------PEKKKYP 174
GT W T+ V+E + F EH+R SM K YP
Sbjct: 157 PAGTYDYWADPFTLFVLEMALMGFAEHRRLQDYRYPGSMSKQYFLGFEKYLGGSGNPSYP 216
Query: 175 GG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 233
GG F+PLGF KD + +E K+KE+KNGRLA+LA VG+ + Q G GP +NL HLAD
Sbjct: 217 GGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAIVGYFI-QGLVTGVGPFQNLLDHLAD 275
Query: 234 PWHNNI 239
P +NN+
Sbjct: 276 PVNNNL 281
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 99/191 (51%), Gaps = 16/191 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 69 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 127
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME-- 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 166 ----KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP F E KVKE+KNGRLA+ + GF Q+ G
Sbjct: 187 LGEITDP---IYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGF-FXQAIVTGK 242
Query: 222 GPLENLATHLA 232
GP+ENLA HLA
Sbjct: 243 GPIENLADHLA 253
>gi|237510764|gb|ACQ99368.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Ankistrodesmus convolutus]
Length = 248
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 97/199 (48%), Gaps = 23/199 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L P RY+E ELIH RWAML + +VPE L
Sbjct: 46 PEYLTGEFPGDYGWDTAGLSADPATFARYREIELIHARWAMLGALGC-----VVPELLAK 100
Query: 116 --------GNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
G W +A A YLG P + ++ L + + + E R
Sbjct: 101 NGTPLPDGGVWFKAGA-AIFADDGLNYLGNPNLIHAQSILATLAFQVVVMGAAESFRFNG 159
Query: 166 KDP------EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
P + YPG FDP+G ++DP F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 160 GAPGGFLEGNDRLYPGDQFDPMGLAEDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 218
Query: 220 GTGPLENLATHLADPWHNN 238
G GP+ NL HLADP NN
Sbjct: 219 GQGPIANLDAHLADPSVNN 237
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 100/197 (50%), Gaps = 22/197 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D L PE RY+E ELIH RWAML + + PE L
Sbjct: 54 PSYLTGEFPGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALG-----CVTPEILSK 108
Query: 114 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
G W +A GG YLG V ++ IL + + + +E R +
Sbjct: 109 YGGVSFGESVWFKAGSQIFQEGG-LDYLGNANLVHAQSILAILGCQVVLMGAIEAYR-VN 166
Query: 166 KDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
P + YPG FDPLG + DP F E K+KEIKNGRLA+ + GF V Q+ G
Sbjct: 167 GGPLGEGLDPLYPGDKFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFFV-QAVVTGK 225
Query: 222 GPLENLATHLADPWHNN 238
GP+EN A H+ADP+ N
Sbjct: 226 GPIENWAEHVADPFSVN 242
>gi|268612160|pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612178|pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612196|pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 112/220 (50%), Gaps = 38/220 (17%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSS 102
W + YLDGS PGD+GFDPL L + PE + E E+I+ R+AML V +
Sbjct: 59 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGA 117
Query: 103 KFFWILVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVE 159
+ PE LG + + A+P + ++ GT W T+ V E + F E
Sbjct: 118 -----IAPEILGKAGLIPQE--TALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAE 170
Query: 160 HQR--------SMEKD-----------PEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIK 199
H+R SM K + YPGG F +PLGF KD + ++ K+KE+K
Sbjct: 171 HRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVK 230
Query: 200 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
NGRLA+LA +G+ V Q+ G GP +NL HL DP HNNI
Sbjct: 231 NGRLAMLAILGYFV-QALVTGVGPYQNLLDHLTDPVHNNI 269
>gi|3417451|dbj|BAA32346.1| light-harvesting chlorophyll a/b-binding protein of photosystem II
[Cryptomeria japonica]
Length = 266
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 101/197 (51%), Gaps = 16/197 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G P G P PE + +E E+IH RWAML + F +L
Sbjct: 64 GEP-PSYLTGEFPVTTGGTPPVCQPDPETFAKNRELEVIHARWAMLGALGCVFPELLSRN 122
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME-- 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP 181
Query: 166 ----KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 182 LGEITDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFYV-QAIVTGK 237
Query: 222 GPLENLATHLADPWHNN 238
GPLENLA HLADP +NN
Sbjct: 238 GPLENLADHLADPVNNN 254
>gi|145079356|tpg|DAA05911.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Acetabularia acetabulum]
Length = 244
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 100/192 (52%), Gaps = 12/192 (6%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA--- 112
P YL G PGD+G+D L PE + Y+E ELIH RWAML + IL A
Sbjct: 45 PSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVS 104
Query: 113 LGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 170
G W +A GG YLG P V ++ IL + + + +E R + P
Sbjct: 105 FGESVWFKAGSQIFQEGG-LDYLGNPSLVHAQSILAILGCQVVLMGLIEAYR-VNGGPLG 162
Query: 171 KK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
+ +PG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+EN
Sbjct: 163 EGLDVLHPGEKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYV-QAIVTGKGPIEN 221
Query: 227 LATHLADPWHNN 238
A H+ADP+ N
Sbjct: 222 WAEHVADPFSVN 233
>gi|145079335|tpg|DAA05910.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Acetabularia acetabulum]
Length = 244
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 100/192 (52%), Gaps = 12/192 (6%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA--- 112
P YL G PGD+G+D L PE + Y+E ELIH RWAML + IL A
Sbjct: 45 PSYLTGQFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVS 104
Query: 113 LGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 170
G W +A GG YLG P V ++ IL + + + +E R + P
Sbjct: 105 FGESVWFKAGSQIFQEGG-LDYLGNPSLVHAQSILAILGCQVVLMGLIEAYR-VNGGPLG 162
Query: 171 KK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
+ +PG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+EN
Sbjct: 163 EGLDVLHPGEKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYV-QAIVTGKGPIEN 221
Query: 227 LATHLADPWHNN 238
A H+ADP+ N
Sbjct: 222 WAEHVADPFSVN 233
>gi|541565|gb|AAA57542.1| PSI type II chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 271
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 106/201 (52%), Gaps = 33/201 (16%)
Query: 58 YLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGN 117
+LDGS PGDFGFDP LG P+ L+ + ++ELIH RWAMLAV I++PE L
Sbjct: 78 WLDGSLPGDFGFDPFGLGSDPDTLKWFAQAELIHSRWAMLAVTG-----IIIPECLERLG 132
Query: 118 WVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPE 169
+++ W G Y T+ V + + + + E +R S++ +P+
Sbjct: 133 FIENFSW--YDAGSREYFADST------TLFVAQMVLMGWAEGRRWADLIKPGSVDIEPK 184
Query: 170 ---------KKKYPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 218
YPGG FD + + + P+ + KEIKNGRLA+LAF+GFC Q+ Y
Sbjct: 185 YPHKVNPKPDAGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCF-QATY 243
Query: 219 PGTGPLENLATHLADPWHNNI 239
P+ENL HLADP H N+
Sbjct: 244 TSQDPIENLMAHLADPGHCNV 264
>gi|159478202|ref|XP_001697193.1| chlorophyll a-b binding protein of photosystem II [Chlamydomonas
reinhardtii]
gi|60391855|sp|Q93WD2.3|CB29_CHLRE RecName: Full=Chlorophyll a-b binding protein CP29; AltName:
Full=Lhcbm4
gi|15430560|dbj|BAB64415.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas reinhardtii]
gi|15430568|dbj|BAB64419.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas reinhardtii]
gi|27542567|gb|AAO16494.1| CP29-like protein [Chlamydomonas reinhardtii]
gi|158274667|gb|EDP00448.1| chlorophyll a-b binding protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 280
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 128/275 (46%), Gaps = 57/275 (20%)
Query: 12 ATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDP 71
TTA ++ K T+ + KY A W+P RP +LDGS PGD GFDP
Sbjct: 16 GTTATKPAPKATTKKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDP 75
Query: 72 LRLGE--------VPEN-------------------------------------LERYKE 86
L L + V EN L R++E
Sbjct: 76 LGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRE 135
Query: 87 SELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPT 146
ELIH RWAMLA + + LV EA +WV+A + V A+Y G +P+ ++
Sbjct: 136 CELIHGRWAMLACLGA-----LVAEATTGVSWVEAGK---VELDGASYAGLSLPF-SITQ 186
Query: 147 ILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGF-SKDPQKFEEYKVKEIKNGRLAL 205
++ IE + + E R+ E +PEK+ YPGG FDPL S+D ++ K EIK+ RLA+
Sbjct: 187 LIWIEVILVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAM 246
Query: 206 LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 240
++F G+ V Q+ G G L +LA AD +N G
Sbjct: 247 VSFFGYGV-QALSTGEGALGSLA-KFADGLNNGKG 279
>gi|3386569|gb|AAC28490.1| photosystem II type II chlorophyll a/b binding protein [Sorghum
bicolor]
Length = 191
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 95/181 (52%), Gaps = 9/181 (4%)
Query: 65 GDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGN--WVQAQ 122
GD+G+D L PE R +E E+IH RWAML + F IL + G W +A
Sbjct: 1 GDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAG 60
Query: 123 EWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DPEKKKYPGGA 177
GG YLG P V ++ I + + + FVE R + K YPGGA
Sbjct: 61 AQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKVYPGGA 119
Query: 178 FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 237
FDPLG + DP E KVKE+KNGRLA+ + GF V Q+ G GP+ENL H+ADP N
Sbjct: 120 FDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLFDHVADPVAN 178
Query: 238 N 238
N
Sbjct: 179 N 179
>gi|356554088|ref|XP_003545381.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 1 [Glycine max]
gi|356554090|ref|XP_003545382.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 2 [Glycine max]
Length = 276
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 124/267 (46%), Gaps = 42/267 (15%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDG 61
A T S G + P S S A + P + + W + YLDG
Sbjct: 16 AEATRQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDR----PLWFASKQSLSYLDG 71
Query: 62 SAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSSKFFWILVPEALGL 115
S PGD+GFDPL L + PE + E E+I+ R+AML V + + PE LG
Sbjct: 72 SLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGA-----IAPEILGK 125
Query: 116 GNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SM 164
+ + A+P + GT W T+ V E + F EH+R SM
Sbjct: 126 AGLIPQE--TALPWFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSM 183
Query: 165 EKD-----------PEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFC 212
K + YPGG F +PLGF KD + ++ K+KE+KNGRLA+LA +G+
Sbjct: 184 GKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYF 243
Query: 213 VQQSAYPGTGPLENLATHLADPWHNNI 239
V Q+ G GP +NL HLADP HNNI
Sbjct: 244 V-QALVTGVGPYQNLLDHLADPVHNNI 269
>gi|87313205|gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 96/192 (50%), Gaps = 10/192 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G GD+G+D L P+ +Y+E E+IH RWAML + +L +
Sbjct: 47 PAYLTGEFAGDYGWDTAGLSADPQTFAKYREIEVIHARWAMLGALGCITPELLAKNGVPF 106
Query: 116 GNWVQAQEWAAV-PGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPE--- 169
G V + A + G YLG V ++ L ++ L + E R+ P
Sbjct: 107 GEAVWFKAGAQIFQDGGLNYLGNENLVHAQSILATLAVQVLLMGAAESYRANGGAPGGFG 166
Query: 170 ---KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
YPGGAFDPLG + DP E KVKEIKNGRLA+ + GF V Q+ G GP+ N
Sbjct: 167 EDLDSLYPGGAFDPLGLADDPDTLAELKVKEIKNGRLAMFSMFGFFV-QAIVTGQGPIAN 225
Query: 227 LATHLADPWHNN 238
L HL+DP NN
Sbjct: 226 LDAHLSDPSGNN 237
>gi|209868191|gb|ACI90635.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus yunnanensis]
Length = 254
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 120/259 (46%), Gaps = 41/259 (15%)
Query: 5 TLMSCGIATTAFPS-VLSSSKSKFFTAVSLPAAANA----------TSKYAMSADWMP-- 51
T+ SCGI + AF +SS K + + A + T K + SA P
Sbjct: 2 TMASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSASASTSPWY 61
Query: 52 ------------GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV 99
GEP P YL G PGD+G+D L PE + +E E+IH RWAML
Sbjct: 62 GPDRVLYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 120
Query: 100 VSSKFFWILVPEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSI 155
+ F +L + G W +A GG YLG P V ++ I + + +
Sbjct: 121 LGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILM 179
Query: 156 AFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFV 209
VE R DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ +
Sbjct: 180 GAVEGYRIAGGPLGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 236
Query: 210 GFCVQQSAYPGTGPLENLA 228
GF V Q+ G GP+ENLA
Sbjct: 237 GFFV-QAIVTGKGPIENLA 254
>gi|255646873|gb|ACU23907.1| unknown [Glycine max]
Length = 276
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 125/267 (46%), Gaps = 42/267 (15%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDG 61
A T S G + P S S A ++P + + W + YLDG
Sbjct: 16 AEATRQSLGPRSLQSPFGFSRKASFLVKAAAIPPVKQGSDR----PLWFASKQSLSYLDG 71
Query: 62 SAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSSKFFWILVPEALGL 115
S PGD+GFDPL L + PE + E E+I+ R+AML V + + PE LG
Sbjct: 72 SLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGA-----IAPEILGK 125
Query: 116 GNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SM 164
+ + A+P + GT W T+ V E + F EH+R SM
Sbjct: 126 AGLIPQE--TALPWFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSM 183
Query: 165 EKD-----------PEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFC 212
K + YPGG F +PLGF KD + ++ K+KE+KNGRLA+LA +G+
Sbjct: 184 GKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYF 243
Query: 213 VQQSAYPGTGPLENLATHLADPWHNNI 239
V ++ G GP +NL HLADP HNNI
Sbjct: 244 V-RALVTGVGPYQNLLDHLADPVHNNI 269
>gi|357497757|ref|XP_003619167.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
gi|355494182|gb|AES75385.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
Length = 229
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 97/191 (50%), Gaps = 31/191 (16%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G++ L PE + +E E+IH RWAM
Sbjct: 50 PSYLTGEFPGDYGWNTAGLSADPETFAKNRELEVIHSRWAMFD----------------- 92
Query: 116 GNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK------D 167
W +A+ GG YLG P V ++ I + + + VE R D
Sbjct: 93 -RWFKARSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVID 150
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
P YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLENL
Sbjct: 151 P---LYPGGSFDPLGLADDPEAFVELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENL 206
Query: 228 ATHLADPWHNN 238
A HLADP +NN
Sbjct: 207 ADHLADPVNNN 217
>gi|356501755|ref|XP_003519689.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 276
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 111/220 (50%), Gaps = 38/220 (17%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSS 102
W + YLDGS PGD+GFDPL L + PE + E E+I+ R+AML V +
Sbjct: 59 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGA 117
Query: 103 KFFWILVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVE 159
+ PE LG + + A+P + GT W T+ V E + F E
Sbjct: 118 -----IAPEILGKAGLIPQE--TALPWFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAE 170
Query: 160 HQR--------SMEKD-----------PEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIK 199
H+R SM K + YPGG F +PLGF KD + ++ K+KE+K
Sbjct: 171 HRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVK 230
Query: 200 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
NGRLA+LA +G+ V Q+ G GP +NL HLADP HNNI
Sbjct: 231 NGRLAMLAILGYFV-QALVTGVGPYQNLLDHLADPVHNNI 269
>gi|543938|sp|Q00827.1|CB48_MAIZE RecName: Full=Chlorophyll a-b binding protein 48, chloroplastic;
AltName: Full=LHCII type I CAB-48; Short=LHCP; Flags:
Precursor
gi|22228|emb|CAA44888.1| chlorophyll a/b binding protein precursor [Zea mays]
Length = 264
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 104/199 (52%), Gaps = 16/199 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ G P P YL G PGD+G+D L PE + +E E+IHCRWA+ + F +L
Sbjct: 60 LSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLA 118
Query: 110 PEAL--GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G G W +A GG ++ G P V ++ I + + + VE
Sbjct: 119 RNGVKFGEGVWFKAGSQIFSEGG-LSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAG 177
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP Y GG+FDPLG DP++F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 178 GRLGEVVDP---LYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 233
Query: 220 GTGPLENLATHLADPWHNN 238
G GP+ENLA HL DP +NN
Sbjct: 234 GKGPIENLADHLTDPVNNN 252
>gi|356539957|ref|XP_003538459.1| PREDICTED: chlorophyll a-b binding protein CP29.3,
chloroplastic-like [Glycine max]
Length = 282
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 113/225 (50%), Gaps = 53/225 (23%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPL-----------RLGEVPENL---------------- 81
W P P +LDGS GD GFDP L + +NL
Sbjct: 64 WFPNAEPPEWLDGSMIGDRGFDPFGFAKPAEYLQFDLDSLDQNLAKNIAGDVIGTRVEVA 123
Query: 82 ----------------ERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
+R++E ELIH RWAML + + L EAL W A +
Sbjct: 124 EVKPTPFQPYSEVFGIQRFRECELIHGRWAMLGSLGA-----LAVEALTGVAWQDAGKVE 178
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFS 184
V G ++YLG P+P+ +L T++ IE + I ++E QR+ E DPEK+ YPGG FDPLG +
Sbjct: 179 LVEG--SSYLGLPLPF-SLTTLIWIEVIVIGYIEFQRNAELDPEKRLYPGGRFFDPLGLA 235
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 229
DP++ ++ EIK+ RLA++ F+ F + Q+A G GP+ LAT
Sbjct: 236 NDPEEKARLQLAEIKHSRLAMVVFLIFAI-QAAVTGKGPISFLAT 279
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 100/190 (52%), Gaps = 12/190 (6%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA--- 112
P YL G PGD+G+D L PE + Y+E ELIH RWAML + IL A
Sbjct: 30 PSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILAKYAGVS 89
Query: 113 LGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 170
G W +A GG YLG P V ++ IL + + + +E R + P
Sbjct: 90 CGESVWFKAGSQIFQEGG-LDYLGNPSLVHAQSILAILGCQVVLMGLIEAYR-VNGGPLG 147
Query: 171 KK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
+ +PG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+EN
Sbjct: 148 EGLDPLHPGDKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYV-QAIVTGKGPIEN 206
Query: 227 LATHLADPWH 236
A H+ADP++
Sbjct: 207 WADHVADPFN 216
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 117/260 (45%), Gaps = 37/260 (14%)
Query: 5 TLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPR--------- 55
T+ + G AT L ++S ++ A K+ MS + G R
Sbjct: 4 TVTAAGSATVLKTRFLGQTRS---SSALRDVVAMGNGKFTMSNELWYGPDRVKYLGPFSA 60
Query: 56 --PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL 113
P YL+G PGD+G+D L PE R + E+IH RWAML + + PE L
Sbjct: 61 QTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC-----ITPEVL 115
Query: 114 GLGNWVQAQ----EWAAVPG-----GQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR 162
WV+ W G YLG P V ++ +L + L + VE R
Sbjct: 116 E--KWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR 173
Query: 163 SMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 218
D YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF + Q+
Sbjct: 174 INGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFI-QAIV 232
Query: 219 PGTGPLENLATHLADPWHNN 238
G GPLENL HL DP NN
Sbjct: 233 TGKGPLENLLDHLDDPVANN 252
>gi|145079271|tpg|DAA05907.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Acetabularia acetabulum]
Length = 219
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 101/190 (53%), Gaps = 12/190 (6%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA--- 112
P YL G PGD+G+D L PE + Y+E ELIH RWAML + IL A
Sbjct: 26 PSYLKGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVS 85
Query: 113 LGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 170
G W +A GG YLG P V ++ IL + + + +E R + P
Sbjct: 86 FGESVWFKAGSQIFQEGG-LDYLGNPSLVHAQSILAILGCQVVLMGLIEAYR-VNGGPLG 143
Query: 171 KK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
+ +PG +FDPLG + DP F E K+KEIKNGRLA+ + GF V Q+ G GP+EN
Sbjct: 144 EGLDTLHPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYV-QAIVTGKGPIEN 202
Query: 227 LATHLADPWH 236
A H+ADP++
Sbjct: 203 WADHVADPFN 212
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 100/197 (50%), Gaps = 22/197 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D L PE RY+E ELIH RWAML + + PE L
Sbjct: 54 PSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALG-----CVTPEILSK 108
Query: 114 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
G W +A GG YLG V ++ IL + + + +E R +
Sbjct: 109 YGGVSFGESVWFKAGSQIFQEGG-LDYLGNANLVHAQSILAILGCQVVLMGAIEAYR-VN 166
Query: 166 KDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
P + YPG FDPLG + DP F E K+KEIKNGRLA+ + GF V Q+ G
Sbjct: 167 GGPLGEGLDPLYPGDKFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYV-QAVVTGK 225
Query: 222 GPLENLATHLADPWHNN 238
GP+EN A H+A+P+ N
Sbjct: 226 GPIENWAEHVANPFSVN 242
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 101/196 (51%), Gaps = 20/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE +RY+E ELIH RWAML + + PE L
Sbjct: 70 PSYLTGEFPGDYGWDSAGLSSDPETFKRYRELELIHARWAMLGALG-----CVTPELLAK 124
Query: 116 GN-------WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSM-- 164
W +A GG YLG P V ++ L + + + +E R
Sbjct: 125 NGTPIAEPVWFKAGAQIFQEGG-LDYLGNPGLVHAQSILATLACQVILMGAIEGFRVNGG 183
Query: 165 -EKDPEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
+ K +PGG FDPL ++DP F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 184 PAGEGLDKLHPGGPWFDPLALAEDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGQG 242
Query: 223 PLENLATHLADPWHNN 238
P+ENL +HLA+P NN
Sbjct: 243 PIENLESHLANPGVNN 258
>gi|255077157|ref|XP_002502229.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226517494|gb|ACO63487.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 233
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 126/245 (51%), Gaps = 37/245 (15%)
Query: 12 ATTAFPSVLSSSKSKFFTAVSLPAAANATSKY--AMSADWMPGEP-RPPYLDGSAPGDFG 68
A +A + + S++ F P +A A+ K A W+ P +LDG+ PGDFG
Sbjct: 14 AVSARKANFAGSRASFAAPAKAPVSARASLKVQAANRELWLKDSTVAPAHLDGTLPGDFG 73
Query: 69 FDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGN-WVQAQEWAAV 127
FDPL LG PE L+ Y+E+EL++ RWAM+AV I E LG+G W +A
Sbjct: 74 FDPLGLGADPERLKYYQEAELMNARWAMMAVAG-----ICTTEILGIGGPWYEA------ 122
Query: 128 PGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR-----SMEKDPEKKKYPGGAFDPLG 182
G A Y +P + +L ++F + +E +R + K + +P +DP+G
Sbjct: 123 --GAAEY---DLP---INALLAVQFPVMGILELRRIRGWLATGKSGVNETFP---WDPMG 171
Query: 183 FSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDV 242
+ D + +KE+KNGRLA++AFVG VQ Y TGP+ L H+ DP+ N+
Sbjct: 172 MNGD-----QMALKEVKNGRLAMIAFVGIVVQAIVYR-TGPVAALKDHITDPFGCNMATN 225
Query: 243 IIPRG 247
I+ G
Sbjct: 226 IMHIG 230
>gi|15219941|ref|NP_176347.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|334183551|ref|NP_001185280.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332195725|gb|AEE33846.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195727|gb|AEE33848.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 273
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 110/220 (50%), Gaps = 38/220 (17%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSS 102
W YLDGS PGD+GFDPL L + PE + E E+I+ R+AML +
Sbjct: 56 WFASSQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGA 114
Query: 103 KFFWILVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVE 159
+ PE LG + A+ A+P Q + GT W T+ V+E + F E
Sbjct: 115 -----IAPEILGKAGLIPAE--TALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAE 167
Query: 160 HQR--------SMEKD-----------PEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIK 199
H+R SM K YPGG F +PLGF KD + +E K+KE+K
Sbjct: 168 HRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVK 227
Query: 200 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
NGRLA+LA +G+ + Q G GP +NL HLADP +NN+
Sbjct: 228 NGRLAMLAILGYFI-QGLVTGVGPYQNLLDHLADPVNNNV 266
>gi|255070815|ref|XP_002507489.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522764|gb|ACO68747.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 249
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 112/225 (49%), Gaps = 44/225 (19%)
Query: 40 TSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV 99
T A+ ++ PG P +LDG+ PGD+GFDPL LGE L Y+++EL+H RWAML V
Sbjct: 35 TVAAAVRPNYFPGSTPPKHLDGTMPGDYGFDPLGLGEDKAALAWYQQAELMHARWAMLGV 94
Query: 100 VSSKFFWILVPEALG-------LGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEF 152
+ PE G L NW A + Y+ T+ V++
Sbjct: 95 AG-----MAAPEIFGNPLVDGPLPNWADAPFYDG-------YIADA------NTLFVVQM 136
Query: 153 LSIAFVEHQR--------SMEKDP--EKKK-------YPGGA-FDPLGFSKDPQKFEEYK 194
+ + E +R S+ DP E +K YPGG F+P+G +K ++ + +
Sbjct: 137 FLMNWAEVRRWQDMKNPGSVHADPYDESRKCTGTDVGYPGGGLFNPMGMAKSAEEEKTLR 196
Query: 195 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
KEI NGRLA++A +G C Q GTGP+ NL HLADP H I
Sbjct: 197 TKEIANGRLAMVAAMG-CFIQHDVTGTGPVANLKAHLADPAHATI 240
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 98/189 (51%), Gaps = 16/189 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE R +E E+IH RWAML + F +L
Sbjct: 68 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 126
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 127 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWASQVILMGAVEGYRIAGGP 185
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 186 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 241
Query: 222 GPLENLATH 230
GP+ENLA H
Sbjct: 242 GPIENLADH 250
>gi|384246706|gb|EIE20195.1| chlorophyll a/b-binding protein, partial [Coccomyxa subellipsoidea
C-169]
Length = 203
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 102/192 (53%), Gaps = 24/192 (12%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P YLDGS PGD GFDP+RL P L E EL + R AMLAV IL
Sbjct: 1 WYPGAEAPSYLDGSLPGDRGFDPMRLAANPSTLPWLVEGELYNGRVAMLAVAG-----IL 55
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAF-VEHQRSMEKD 167
+ EA GLG W W+A + P+P+ P ++V + AF V+ + +K
Sbjct: 56 LVEAAGLGPW-----WSA-----PFRVDWPLPY--WPGVVVFHAIYAAFEVKRFDNFQKY 103
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
E FDPL D + + E++NGRLA+LAF+GF Q+A G GPLENL
Sbjct: 104 GETGLLGFVPFDPLNMRDDYK-----RQSEVRNGRLAMLAFIGFA-SQAANTGKGPLENL 157
Query: 228 ATHLADPWHNNI 239
H+ADP HNNI
Sbjct: 158 KDHIADPTHNNI 169
>gi|307110650|gb|EFN58886.1| hypothetical protein CHLNCDRAFT_29899 [Chlorella variabilis]
Length = 266
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 113/230 (49%), Gaps = 43/230 (18%)
Query: 42 KYAMSADWMPGEPRPPYLDGS-APGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVV 100
+ A A+W+PG P +L+ S PG+FGFDPL LG PE L + ESE +HCRWAML V
Sbjct: 33 RAAARANWLPGNDFPAHLENSPLPGNFGFDPLGLGANPERLAWFAESERVHCRWAMLGVA 92
Query: 101 SSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEH 160
++ P+ + V + + G ++ E + +VE
Sbjct: 93 GILVQELVRPDVFWYTSAVDVELPFDITG-----------------LVAFELFVMHWVES 135
Query: 161 QR--------SMEKDP---------EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRL 203
+R SM++DP + YPGG F P P EE KVKEIKNGRL
Sbjct: 136 RRGYDIKNPGSMDQDPIFSNFKLPSHEPGYPGGIFAPF----VPGSMEELKVKEIKNGRL 191
Query: 204 ALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI--GDVIIP-RGIVP 250
A+LAF+GF + + G PL L HL+DP + I V++P + IVP
Sbjct: 192 AMLAFIGFTM-AAQISGLNPLAALGEHLSDPLNTTIFSKAVVVPGQAIVP 240
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 114/270 (42%), Gaps = 46/270 (17%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPR----- 55
MAS + + A A LS + AA + M D G R
Sbjct: 1 MASTIMAAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLG 60
Query: 56 ------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
P YL+G PGD+G+D L PE R + E+IH RWAML + F
Sbjct: 61 PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVF----- 115
Query: 110 PEALGLGNWVQAQEWAAV---------------PGGQATYLGTP--VPWGTLPTILVIEF 152
PE L Q+W V G YLG P V ++ +L +
Sbjct: 116 PEVL--------QKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQV 167
Query: 153 LSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAF 208
L + VE R D YPGG FDPLG + DP F E KVKEIKNGRLA+ +
Sbjct: 168 LLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
Query: 209 VGFCVQQSAYPGTGPLENLATHLADPWHNN 238
GF V Q+ G GPLENL HL DP NN
Sbjct: 228 FGFFV-QAIVTGKGPLENLFDHLDDPVANN 256
>gi|115813|sp|P27522.1|CB13_SOLLC RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCI type III CAB-8; Flags: Precursor
gi|19182|emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Solanum lycopersicum]
Length = 273
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 121/252 (48%), Gaps = 40/252 (15%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77
S +S S ++ + V A+ + A W + YLDG PGDFGFDPL L +
Sbjct: 25 SRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSD- 83
Query: 78 PENLERYKE------SELIHCRWAMLAVVSSKFFWILVPEALGLGNWV-QAQEWAAVPGG 130
PE + E E+I+ R+AML + + PE LG + Q A G
Sbjct: 84 PEGTGGFIEPKWLAYGEVINGRFAMLGAAGA-----IAPEILGKAGLIPQETALAWFQTG 138
Query: 131 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEK--------------DP 168
GT W T+ V+E + F EH+R SM K DP
Sbjct: 139 VIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDP 198
Query: 169 EKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
YPGG F+PLGF KD + +E K+KEIKNGRLA+LA +G+ + Q+ G GP +NL
Sbjct: 199 A---YPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFI-QALVTGVGPYQNL 254
Query: 228 ATHLADPWHNNI 239
HLADP +NN+
Sbjct: 255 LDHLADPVNNNV 266
>gi|293337343|gb|ADE42967.1| type III chlorophyll a/b binding protein [Gardenia jasminoides]
Length = 274
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 123/254 (48%), Gaps = 45/254 (17%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRL 74
S SSS K VS A AT AD W + YLDGS PGD+GFDPL L
Sbjct: 27 SFQSSSSRK----VSFAVRAEATPPAKQGADRQLWFASKQSLSYLDGSLPGDYGFDPLGL 82
Query: 75 GEVPENLERYKE------SELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVP 128
+ PE + E E+I+ R+AML V + + PE LG + + A+P
Sbjct: 83 SD-PEGTGGFIEPSWLAYGEIINGRYAMLGAVGA-----IAPEILGKAGLIPPE--TALP 134
Query: 129 GGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR----------------SMEKDPE 169
+ + GT W T+ V E + F EH+R EK E
Sbjct: 135 WFKTGVIPPAGTYDYWADPYTLFVFELALMGFAEHRRFQDFQKPGCLSKQYFLGFEKYFE 194
Query: 170 KKK---YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
YPGG F+PLGF KD + ++ K+KE+KNGRLA+LA +G+ V Q+ G GP +
Sbjct: 195 GSGNPIYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFV-QALVTGVGPYQ 253
Query: 226 NLATHLADPWHNNI 239
NL HL+DP +NNI
Sbjct: 254 NLLDHLSDPVNNNI 267
>gi|449463148|ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
gi|449532805|ref|XP_004173369.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
Length = 264
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 107/226 (47%), Gaps = 30/226 (13%)
Query: 37 ANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYK 85
A T KY MS D G R P YL+G PGD+G+D L PE + +
Sbjct: 33 AMGTGKYTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNR 92
Query: 86 ESELIHCRWAMLAV-------VSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTP 138
E+IH RWAML V K+ + E + W +A GG YLG P
Sbjct: 93 ALEVIHGRWAMLGALGCITPEVLEKWLKVDFKEPV----WFKAGSQIFTEGG-LDYLGNP 147
Query: 139 --VPWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEE 192
V ++ +L + + + VE R D YPGG FDPLG + DP F E
Sbjct: 148 NLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAE 207
Query: 193 YKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
KVKEIKNGRLA+ + GF V Q+ G GPLENL HL DP NN
Sbjct: 208 LKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDDPVANN 252
>gi|115828|sp|P20865.1|CB2_DUNSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167987|gb|AAA33278.1| major chlorophyll binding protein [Dunaliella salina]
Length = 273
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 103/201 (51%), Gaps = 15/201 (7%)
Query: 48 DWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWI 107
D PR P G PGD+G+D L PE +RY+E ELIH R +L + +
Sbjct: 67 DLQHQHPRLPT--GEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPEL 124
Query: 108 LVPE-ALGLGN---WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQ 161
L E + G+ W +A A G YLG P + + L ++ + + VE
Sbjct: 125 LADEDGIKFGDAAIWFKAGA-AIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGY 183
Query: 162 RSMEKDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSA 217
R + P + YPG AFDPLG + DP F E KVKEIKNGRLA+ A +GF V Q+
Sbjct: 184 R-VNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFV-QAI 241
Query: 218 YPGTGPLENLATHLADPWHNN 238
G GP+ENL HLA+P NN
Sbjct: 242 VTGKGPIENLTDHLANPAENN 262
>gi|255640167|gb|ACU20374.1| unknown [Glycine max]
Length = 276
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 110/220 (50%), Gaps = 38/220 (17%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSS 102
W + YLDGS PGD+GFDPL L + PE + E E+I+ R+AML V +
Sbjct: 59 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGA 117
Query: 103 KFFWILVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVE 159
+ PE LG + + A+P + GT W T+ V E + F E
Sbjct: 118 -----IAPEILGKAGLIPQE--TALPWFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAE 170
Query: 160 HQR--------SMEKD-----------PEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIK 199
H+R SM K + YPGG F +PLGF KD + ++ K+KE+K
Sbjct: 171 HRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVK 230
Query: 200 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
NGRLA+LA +G+ V Q+ G GP +NL HL DP HNNI
Sbjct: 231 NGRLAMLAILGYFV-QALVTGVGPYQNLLDHLTDPVHNNI 269
>gi|312281797|dbj|BAJ33764.1| unnamed protein product [Thellungiella halophila]
Length = 273
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 123/254 (48%), Gaps = 44/254 (17%)
Query: 17 PSVLSSSKSKFFT--AVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRL 74
P+V +S + F A S P ++ W YLDGS PGD+GFDPL L
Sbjct: 26 PAVSTSRRKSSFVVKATSTPPVKQGANR----PLWFASSQSLTYLDGSLPGDYGFDPLGL 81
Query: 75 GEVPENLERYKE------SELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVP 128
+ PE + E E+I+ R+AML + + PE LG + A+ A+P
Sbjct: 82 SD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGA-----IAPEILGKAGLIPAE--TALP 133
Query: 129 GGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD---------- 167
Q + GT W T+ V+E + F EH+R SM K
Sbjct: 134 WFQTGVIPPAGTYSYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGFS 193
Query: 168 -PEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ YPGG F +PLGF K+ + +E K+KEIKNGRLA+LA +G+ V Q G GP +
Sbjct: 194 GSGEPAYPGGPFFNPLGFGKNEKSMKELKLKEIKNGRLAMLAILGYFV-QGLVTGVGPYQ 252
Query: 226 NLATHLADPWHNNI 239
NL HLADP +NN+
Sbjct: 253 NLLDHLADPVNNNV 266
>gi|116779436|gb|ABK21281.1| unknown [Picea sitchensis]
gi|116780920|gb|ABK21880.1| unknown [Picea sitchensis]
gi|116785937|gb|ABK23915.1| unknown [Picea sitchensis]
gi|116792210|gb|ABK26276.1| unknown [Picea sitchensis]
gi|224284045|gb|ACN39760.1| unknown [Picea sitchensis]
gi|224285097|gb|ACN40276.1| unknown [Picea sitchensis]
Length = 288
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 108/219 (49%), Gaps = 52/219 (23%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W+PG P +LDGS GD+GFDPL LG+ E
Sbjct: 69 WLPGAKAPEWLDGSLVGDYGFDPLGLGKPSEYLQYDVDSLDQNLDLNLPGDLLGDFVGDP 128
Query: 80 -------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAA 126
L+R++E ELIH RWAML V+ + L E W A +
Sbjct: 129 DIKPSIQPYSEVFGLQRFRECELIHGRWAMLGVLGA-----LAVEGFTGIYWQDAGKVEL 183
Query: 127 VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSK 185
V G ++Y G +P+ + T+++IE L + ++E QR+ E DPE + YPGG FDP G +
Sbjct: 184 VEG--SSYFGFSLPF-NMSTLILIEVLLLGYIEFQRNAEVDPETRLYPGGKYFDPFGLAV 240
Query: 186 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
D K + K+ EIK+ RLA++AF+ F + Q+A GPL
Sbjct: 241 DEIKKDRLKLAEIKHARLAMVAFLIFAI-QAAVTSKGPL 278
>gi|104763696|gb|ABF74606.1| chloroplast chlorophyll a/b-binding protein [Agave tequilana]
Length = 186
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 92/171 (53%), Gaps = 15/171 (8%)
Query: 78 PENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGN--WVQAQEWAAVPGGQATYL 135
PE + +E E+IHCRWAML + F +L + G W +A GG YL
Sbjct: 9 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYL 67
Query: 136 GTP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDP 187
G P V ++ I + + + VE R DP YPGG+FDPLG + DP
Sbjct: 68 GNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDP 124
Query: 188 QKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
+ F E KVKEIKNGRLA+ + GF V Q+ G GPLENLA HLADP +NN
Sbjct: 125 EAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 174
>gi|87313207|gb|ABD37900.1| light-harvesting chlorophyll-a/b binding protein LhcbM3
[Acutodesmus obliquus]
Length = 248
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 97/198 (48%), Gaps = 11/198 (5%)
Query: 51 PGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVP 110
P P YL G PGD+G+D L P+ RY+E E+IH RWAML + +L
Sbjct: 40 PFTPESDYLTGEFPGDYGWDTAGLSADPQTFSRYREVEVIHARWAMLGALGCITPELLAK 99
Query: 111 EALGLGNWVQAQEWAAV-PGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 167
+ G V + A + G YLG V ++ L ++ + + E R+
Sbjct: 100 NGVPFGEAVWFKAGAQIFQDGGLNYLGNENLVHAQSILATLAVQVILMGAAEAYRANGGA 159
Query: 168 PE------KKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
P YPGG FDPLG + DP E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 160 PGGFGEDLDSLYPGGKFFDPLGLADDPDTLAELKVKELKNGRLAMFSMFGFFV-QAIVTG 218
Query: 221 TGPLENLATHLADPWHNN 238
GP+ NL HLADP NN
Sbjct: 219 QGPIANLDAHLADPSGNN 236
>gi|225457685|ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic [Vitis vinifera]
gi|297745621|emb|CBI40786.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 112/202 (55%), Gaps = 21/202 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+GFD LG+ P ++Y E++H RWAMLA + + + + LG
Sbjct: 126 PAYLTGELPGDYGFDIAGLGKDPVAFQKYFNFEILHARWAMLAALGALL--PELLDLLGA 183
Query: 116 GNWVQAQEW----AAVPGGQATYLGTP-VPWGTLPTILVIEFLSIAFV---EHQRSMEKD 167
++V+ W + + G YLG P + ++VI + E+ R +
Sbjct: 184 FHFVEPVWWRVGYSKLKGDTLDYLGIPGFHFAGSQGVIVIAICQALLMVGPEYARYCGIE 243
Query: 168 ---------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSA 217
P YPGGA FDPL SKDP FEE KVKEIKNGRLA++A++GF +Q +A
Sbjct: 244 ALEPLGIYLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAA 303
Query: 218 YPGTGPLENLATHLADPWHNNI 239
G GP++NL HLADP+HNN+
Sbjct: 304 -TGKGPVQNLLDHLADPFHNNL 324
>gi|357461189|ref|XP_003600876.1| Chlorophyll a-b binding protein CP29.3 [Medicago truncatula]
gi|355489924|gb|AES71127.1| Chlorophyll a-b binding protein CP29.3 [Medicago truncatula]
Length = 278
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 114/225 (50%), Gaps = 53/225 (23%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGE-----------VPENL---------------- 81
W PG P +LDG+ GD GFDPL L + + +NL
Sbjct: 60 WFPGAQPPEWLDGTMIGDRGFDPLGLAKPVEYLQFDLDSLDQNLAKNLAGDIIGTRVEST 119
Query: 82 ----------------ERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125
+R++E E+IH RWAML + + L EA W A +
Sbjct: 120 DVNPTPFQPYTEVFGIQRFRECEVIHGRWAMLGALGA-----LAVEAFTGVAWQDAGKVE 174
Query: 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFS 184
V G ++Y G +P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG FDPLG +
Sbjct: 175 LVEG--SSYFGFSLPF-SISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLA 231
Query: 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 229
DP++ E ++ EIK+ RLA++ F+ F + Q+A G GP+ +AT
Sbjct: 232 SDPEEKERLQLAEIKHSRLAMVVFLIFAI-QAAVTGKGPIGFIAT 275
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 103/193 (53%), Gaps = 10/193 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE-ALG 114
P YL G PGD+G+D L L PE Y+E+EL+H RWAML + F IL +G
Sbjct: 143 PDYLTGEYPGDYGWDALGLSSDPETFANYREAELLHARWAMLGALGCIFPEILAMNYGVG 202
Query: 115 LGNWVQAQEWAAVPGGQAT-YLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPE-- 169
L V + A V ++ YLG+P V ++ I + L + E R+ P
Sbjct: 203 LEEPVWFKAGALVLNDKSIDYLGSPQLVHASSIIAIAAAQVLLMGGAEAYRASGVAPNGE 262
Query: 170 --KKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
K +PGG F+PL F KD E KVKEIKNGRLA+ + +GF + Q+A G GPL+N
Sbjct: 263 EFDKMHPGGYYFNPLKFGKDEADLAELKVKEIKNGRLAMFSMLGFYI-QAATTGNGPLQN 321
Query: 227 LATHLADPWHNNI 239
L H AD + NI
Sbjct: 322 LVDHRADAANENI 334
>gi|303272113|ref|XP_003055418.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226463392|gb|EEH60670.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 254
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 104/201 (51%), Gaps = 26/201 (12%)
Query: 41 SKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVV 100
+ + W+PG P YLDG+ P D+GFDPLRLG PE L +E+EL++ RWAM A
Sbjct: 36 DRIGVMGHWLPGTEPPSYLDGTMPADYGFDPLRLGANPETLPYLQEAELMNGRWAMHATA 95
Query: 101 SSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVE- 159
IL +A+GL + +A E A LG W L T++ I+ + + F+E
Sbjct: 96 G-----ILFTDAVGLPKFWEAGEAA---------LGD---W-DLKTLVAIQVVVMGFLEA 137
Query: 160 -HQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 218
R E FDP G Q KVKE+KNGRLA+++F+G V Q A
Sbjct: 138 ARIRGFMATGESGVVGNFPFDPTG-----QDSPAMKVKEVKNGRLAMMSFLGM-VSQYAV 191
Query: 219 PGTGPLENLATHLADPWHNNI 239
GT PLE L H+A+P NI
Sbjct: 192 TGTSPLEGLKAHMANPTGVNI 212
>gi|87313167|gb|ABD37880.1| light-harvesting chlorophyll-a/b binding protein Lhca3 [Mesostigma
viride]
Length = 300
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 142/282 (50%), Gaps = 59/282 (20%)
Query: 4 NTLMSCGIATTAFPSVLSS----SKSKFFTAVSLPAA---ANATSKYAMSAD------WM 50
+T+ + +A+ + P+V+ ++ KF A AA A+ +K+ + A+ +
Sbjct: 21 STMATAALASVSVPAVVCGKPAFAEKKFLGARVAAAARPQASKAAKFVVKAEKSDRQLFF 80
Query: 51 PGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSSKF 104
+ YLDGS PGDFG+DPL L + PE + + SE+IHCR+AML +
Sbjct: 81 SDKAAQSYLDGSKPGDFGYDPLGLYK-PEGAGGFIDPKWLAYSEVIHCRYAMLGMAG--- 136
Query: 105 FWILVPEALGLGNWVQAQ------EWAAVPG-GQATYLGTPVPWGTLPTILVIEFLSIAF 157
++ PE LG + A+ + +P GQ Y +P+ + IE + + F
Sbjct: 137 --MVAPEILGKLGLIPAETGLVWFKTGVIPSEGQYDYWASPL------ALFWIEVVLMQF 188
Query: 158 VEHQRSME-KDPEKKK------------------YPGGA-FDPLGFSKDPQKFEEYKVKE 197
E +R + + P + YPGGA F+ LG+ KD + + K+KE
Sbjct: 189 AELRRWQDYRHPGSQSKQYFLGLEQFFGGSGDPSYPGGAIFNFLGYGKDEKSMNDLKLKE 248
Query: 198 IKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+KNGRLA++A +GF +Q A G GP +NL HLADP++NNI
Sbjct: 249 LKNGRLAMVATLGFFIQAMA-TGEGPFQNLTDHLADPFNNNI 289
>gi|380447755|gb|AFD54060.1| morphogenesis protein [Leymus secalinus]
Length = 268
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 115/215 (53%), Gaps = 45/215 (20%)
Query: 58 YLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSSKFFWILVPE 111
YLDG+ PGDFGFDPL L + PE + E E+ + R AM+ VV ++ PE
Sbjct: 59 YLDGTLPGDFGFDPLGLSD-PEGTGGFIEPRWLAYGEIFNGRTAMMGVVG-----MIAPE 112
Query: 112 ALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
ALG V ++ A+P QA + GT W T+ V E I F EH+R
Sbjct: 113 ALGKVGLVPSE--TAIPWFQAGAIPPAGTYQYWADPYTLFVFEMALIGFAEHRRLQDWYN 170
Query: 163 --SMEK--------------DPEKKKYPGG-AFDPLGF-SKDPQKFEEYKVKEIKNGRLA 204
SM K DP YPGG F+PLGF +K ++ +E K+KEIKNGRLA
Sbjct: 171 PGSMGKQYFLGLEKYLGGSGDP---AYPGGPIFNPLGFGTKSEKEMKELKLKEIKNGRLA 227
Query: 205 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+LAF+G + Q+ + G GP +NL HL+DP +NNI
Sbjct: 228 MLAFLGMSL-QAIFTGVGPFQNLLDHLSDPVNNNI 261
>gi|242045970|ref|XP_002460856.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
gi|241924233|gb|EER97377.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
Length = 268
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 115/264 (43%), Gaps = 34/264 (12%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPR----- 55
MAS + + A L ++ + AA A+ + M D G R
Sbjct: 1 MASTIMAATSRVVAAKTPFLGQGRAAANASPLRDVAAAASGRITMGNDLWYGPDRVKYLG 60
Query: 56 ------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
P YL G PGD+G+D L PE R + E+IH RWAML + +
Sbjct: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC-----IT 115
Query: 110 PEALGLGNWVQAQ----EWAAVPG-----GQATYLGTP--VPWGTLPTILVIEFLSIAFV 158
PE L WV+ W G YLG P V ++ +L + + + V
Sbjct: 116 PEVLE--KWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLV 173
Query: 159 EHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
E R D YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V
Sbjct: 174 EGFRINGLDGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV- 232
Query: 215 QSAYPGTGPLENLATHLADPWHNN 238
Q+ G GPLENL HL DP NN
Sbjct: 233 QAIVTGKGPLENLLDHLDDPVANN 256
>gi|357122389|ref|XP_003562898.1| PREDICTED: chlorophyll a-b binding protein of LHCII type III,
chloroplastic-like [Brachypodium distachyon]
Length = 267
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 107/236 (45%), Gaps = 46/236 (19%)
Query: 35 AAANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLER 83
AAA + + +MS + G R P YL G PGD+G+D L PE R
Sbjct: 34 AAAASNGRISMSNELWYGPDRVKYLGPFSAQTPSYLSGEFPGDYGWDTAGLSADPEAFAR 93
Query: 84 YKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAV---------------P 128
+ E+IH RWAML + F PE L Q+W V
Sbjct: 94 NRALEVIHGRWAMLGALGCVF-----PEVL--------QKWVGVEFKEPVWFKAGAQIFS 140
Query: 129 GGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLG 182
G YLG P V ++ +L + L + VE R D YPGG FDPLG
Sbjct: 141 EGGLDYLGNPNLVHAQSILAVLGSQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLG 200
Query: 183 FSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
+ DP F E KVKEIKNGRLA+ + GF V Q+ G GPLENL HL DP NN
Sbjct: 201 LADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLFDHLDDPVANN 255
>gi|297840405|ref|XP_002888084.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
gi|297333925|gb|EFH64343.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
Length = 273
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 109/220 (49%), Gaps = 38/220 (17%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSS 102
W YLDGS PGD+GFDPL L + PE + E E+I+ R+AML +
Sbjct: 56 WFASSQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGA 114
Query: 103 KFFWILVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVE 159
+ PE LG + + A+P Q + GT W T+ V+E + F E
Sbjct: 115 -----IAPEILGKAGLIPPE--TALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAE 167
Query: 160 HQR--------SMEKD-----------PEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIK 199
H+R SM K YPGG F +PLGF KD + +E K+KE+K
Sbjct: 168 HRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVK 227
Query: 200 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
NGRLA+LA +G+ + Q G GP +NL HLADP +NN+
Sbjct: 228 NGRLAMLAILGYFI-QGLVTGVGPYQNLLDHLADPVNNNV 266
>gi|118486699|gb|ABK95186.1| unknown [Populus trichocarpa]
Length = 142
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 85/128 (66%), Gaps = 5/128 (3%)
Query: 117 NWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGG 176
W A + V G ++YLG P+P+ ++ T+++IE L I ++E QR+ E DPEK+ YPGG
Sbjct: 17 TWQDAGKVELVEG--SSYLGQPLPF-SITTLILIEVLVIGYIEFQRNAELDPEKRLYPGG 73
Query: 177 AF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPW 235
F DPLG + DP+K ++ EIK+ RLA++AF+GF V Q+ G GPL N ATHL+DP
Sbjct: 74 NFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAWVTGKGPLNNWATHLSDPL 132
Query: 236 HNNIGDVI 243
H I D +
Sbjct: 133 HTTIIDTL 140
>gi|125558806|gb|EAZ04342.1| hypothetical protein OsI_26482 [Oryza sativa Indica Group]
Length = 266
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 108/230 (46%), Gaps = 36/230 (15%)
Query: 36 AANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERY 84
AA AT + MS + G R P YL G PGD+G+D L PE R
Sbjct: 34 AAAATGRITMSKELWYGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARN 93
Query: 85 KESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAV---------PGGQATYL 135
+ E+IH RWAML + + PE L WV+ V G YL
Sbjct: 94 RALEVIHGRWAMLGALGC-----ITPEVLE--KWVRVDFKEPVWFKAGAQIFSDGGLDYL 146
Query: 136 GTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPE----KKKYPGGA-FDPLGFSKDPQ 188
G P V ++ +L + + + VE R + P YPGG FDPLG + DP
Sbjct: 147 GNPNLVHAQSILAVLGFQVVLMGLVEGYR-INGLPGVGDGNDLYPGGQYFDPLGLADDPV 205
Query: 189 KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
F E KVKEIKNGRLA+ + GF V Q+ G GPLENL HLADP NN
Sbjct: 206 TFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLADPVANN 254
>gi|145079837|tpg|DAA05940.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Micromonas sp. CCMP490]
Length = 233
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 105/198 (53%), Gaps = 34/198 (17%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
PP+LDG+ PGDFGFDPL LG P L+ Y+E+EL++ RWAM+AV I +AL +
Sbjct: 61 PPHLDGTLPGDFGFDPLGLGADPARLKYYQEAELMNSRWAMMAVAG-----ITTTDALNI 115
Query: 116 GN-WVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR-----SMEKDPE 169
G W +A G Y P +P +L ++F + +E +R + K
Sbjct: 116 GGPWYEA--------GAGDY---DFP---IPALLAVQFPVMGILELKRIRGWLATGKSGV 161
Query: 170 KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 229
+P +DP+G + D VKEIKNGRLA++AFVG VQ Y TGP+ L
Sbjct: 162 NSDFP---WDPMGMNNDAM-----AVKEIKNGRLAMIAFVGVVVQAIVYR-TGPVAALKD 212
Query: 230 HLADPWHNNIGDVIIPRG 247
H+ DP+ N+ I+ G
Sbjct: 213 HVVDPFGCNMATNIMHIG 230
>gi|226509520|ref|NP_001150523.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195613464|gb|ACG28562.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195639878|gb|ACG39407.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
Length = 272
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 105/230 (45%), Gaps = 34/230 (14%)
Query: 35 AAANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLER 83
AAA A + M D G R P YL G PGD+G+D L PE R
Sbjct: 39 AAAAAGGRITMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAR 98
Query: 84 YKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQ----EWAAVPG-----GQATY 134
+ E+IH RWAML + + PE L WV+ W G Y
Sbjct: 99 NRALEVIHGRWAMLGALGC-----ITPEVLE--KWVRVDFKEPVWFKAGAQIFSEGGLDY 151
Query: 135 LGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQ 188
LG P V ++ +L + + + VE R D YPGG FDPLG + DP
Sbjct: 152 LGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLADDPV 211
Query: 189 KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
F E KVKEIKNGRLA+ + GF V Q+ G GPLENL HL DP NN
Sbjct: 212 TFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDDPVANN 260
>gi|115472785|ref|NP_001059991.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|34393384|dbj|BAC83393.1| putative chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa Japonica
Group]
gi|113611527|dbj|BAF21905.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|125600722|gb|EAZ40298.1| hypothetical protein OsJ_24743 [Oryza sativa Japonica Group]
gi|215678934|dbj|BAG96364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679381|dbj|BAG96521.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692555|dbj|BAG87975.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737394|dbj|BAG96323.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737576|dbj|BAG96706.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737599|dbj|BAG96729.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767446|dbj|BAG99674.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767453|dbj|BAG99681.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 266
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 108/230 (46%), Gaps = 36/230 (15%)
Query: 36 AANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERY 84
AA AT + MS + G R P YL G PGD+G+D L PE R
Sbjct: 34 AAAATGRITMSKELWYGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARN 93
Query: 85 KESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAV---------PGGQATYL 135
+ E+IH RWAML + + PE L WV+ V G YL
Sbjct: 94 RALEVIHGRWAMLGALGC-----ITPEVLE--KWVRVDFKEPVWFKAGAQIFSDGGLDYL 146
Query: 136 GTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPE----KKKYPGGA-FDPLGFSKDPQ 188
G P V ++ +L + + + VE R + P YPGG FDPLG + DP
Sbjct: 147 GNPNLVHAQSILAVLGFQVVLMGLVEGYR-INGLPGVGDGNDLYPGGQYFDPLGLADDPV 205
Query: 189 KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
F E KVKEIKNGRLA+ + GF V Q+ G GPLENL HLADP NN
Sbjct: 206 TFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLADPVANN 254
>gi|414887113|tpg|DAA63127.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 1
[Zea mays]
gi|414887114|tpg|DAA63128.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 2
[Zea mays]
Length = 269
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 105/230 (45%), Gaps = 34/230 (14%)
Query: 35 AAANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLER 83
AAA A + M D G R P YL G PGD+G+D L PE R
Sbjct: 36 AAAAAGGRITMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAR 95
Query: 84 YKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQ----EWAAVPG-----GQATY 134
+ E+IH RWAML + + PE L WV+ W G Y
Sbjct: 96 NRALEVIHGRWAMLGALGC-----ITPEVLE--KWVRVDFKEPVWFKAGAQIFSEGGLDY 148
Query: 135 LGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQ 188
LG P V ++ +L + + + VE R D YPGG FDPLG + DP
Sbjct: 149 LGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLADDPV 208
Query: 189 KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
F E KVKEIKNGRLA+ + GF V Q+ G GPLENL HL DP NN
Sbjct: 209 TFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDDPVANN 257
>gi|412990668|emb|CCO18040.1| unknown [Bathycoccus prasinos]
Length = 227
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 116/251 (46%), Gaps = 44/251 (17%)
Query: 7 MSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGD 66
M C I + S L S +VS +A + A W PG P +LDGS PGD
Sbjct: 1 MDCSITSRVNTSALKSR------SVSRQSARASFVVKAQRDVWWPGVDAPAHLDGSLPGD 54
Query: 67 FGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAA 126
FGFDPL L PE + ++EL H RWAML V ++ P+ L W W
Sbjct: 55 FGFDPLGLSVDPEMKKWMVQAELQHARWAMLGVAG-----MVGPD---LAPW-DTPSW-- 103
Query: 127 VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------- 168
+ G+ Y W + I+ + + E +R SM KDP
Sbjct: 104 IEAGKFEY------WAPAGPLFFIQMAMMNWAEVRRWQDMKDPGSMNKDPLFGYNANDTN 157
Query: 169 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
YPGG FD LG++K + + K+KEIKNGRLA++A G C Q A G PL NL
Sbjct: 158 TDVGYPGGLFDKLGYAK--KDLDTLKLKEIKNGRLAMVAIAG-CFVQGATTGVSPLTNLT 214
Query: 229 THLADPWHNNI 239
+H+A+P NI
Sbjct: 215 SHIANPGAVNI 225
>gi|110736814|dbj|BAF00366.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 109/220 (49%), Gaps = 38/220 (17%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSS 102
W YLDGS PGD+GFDPL L + PE + E E+I+ R+AML +
Sbjct: 56 WFASSQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGA 114
Query: 103 KFFWILVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVE 159
+ PE LG + A+ A+P Q + GT W T+ V+E + F E
Sbjct: 115 -----IAPEILGKAGLIPAE--TALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAE 167
Query: 160 HQR--------SMEKD-----------PEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIK 199
H+R SM K YPGG F +PLGF KD + +E K+KE+K
Sbjct: 168 HRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVK 227
Query: 200 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
NGRLA+LA +G+ + Q G GP +NL HLA P +NN+
Sbjct: 228 NGRLAMLAILGYFI-QGLVTGVGPYQNLLDHLAGPVNNNV 266
>gi|326514018|dbj|BAJ92159.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 116/224 (51%), Gaps = 45/224 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSS 102
W + YLDG+ PGDFGFDPL L + PE + E E+ + R AM+ VV
Sbjct: 51 WFASKQSLTYLDGTLPGDFGFDPLGLSD-PEGTGGFIEPRWLAYGEIFNGRTAMMGVVG- 108
Query: 103 KFFWILVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVE 159
++ PEALG V + A+P QA + GT W T+ V E I F E
Sbjct: 109 ----MIAPEALGKVGLVPPE--TAIPWFQAGAIPPAGTYQYWADPYTLFVFEMALIGFAE 162
Query: 160 HQR--------SMEK--------------DPEKKKYPGG-AFDPLGF-SKDPQKFEEYKV 195
H+R SM K DP YPGG F+PLGF +K ++ +E K+
Sbjct: 163 HRRLQDWYNPGSMGKQYFLGLEKYLGGSGDP---AYPGGPIFNPLGFGTKSEKEMKELKL 219
Query: 196 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
KEIKNGRLA+LAF+G + Q+ + G GP +NL HL+DP +NNI
Sbjct: 220 KEIKNGRLAMLAFLGMSL-QAIFTGVGPFQNLLDHLSDPVNNNI 262
>gi|255567170|ref|XP_002524566.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536119|gb|EEF37774.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 273
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 117/238 (49%), Gaps = 47/238 (19%)
Query: 37 ANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------S 87
A++T AD W + YLDGS PGDFGFDPL L + PE + E
Sbjct: 41 ASSTPPVKQGADRQLWFASKQSLTYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYG 99
Query: 88 ELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTL 144
E+I+ R+AML + + PE LG + + A+P Q + GT W
Sbjct: 100 EIINGRFAMLGAAGA-----IAPEILGKAGLIPPE--TALPWFQTGVIPPAGTYDYWADP 152
Query: 145 PTILVIEFLSIAFVEHQR--------SMEK--------------DPEKKKYPGG-AFDPL 181
T+ V E + F EH+R SM K DP YPGG F+PL
Sbjct: 153 YTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKFLGGSGDP---AYPGGPLFNPL 209
Query: 182 GFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
GF KD + +E K+KE+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 210 GFGKDEKSMKELKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 266
>gi|116790890|gb|ABK25779.1| unknown [Picea sitchensis]
Length = 288
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 107/219 (48%), Gaps = 52/219 (23%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W+PG P +LDGS GD+GFDPL LG+ E
Sbjct: 69 WLPGAKAPEWLDGSLVGDYGFDPLGLGKPSEYLQYDVDSLDQNLDLNLPGDLLGDFVGDP 128
Query: 80 -------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAA 126
L+R++E ELIH RWAML V+ + L E W A +
Sbjct: 129 DIKPSIQPYSEVFGLQRFRECELIHGRWAMLGVLGA-----LAVEGFTGIYWQDAGKVEL 183
Query: 127 VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSK 185
V G ++Y G +P+ + T+++IE L + ++E QR+ E DPE + YPGG FDP G +
Sbjct: 184 VEG--SSYFGFSLPF-NMSTLILIEVLLLGYIEFQRNAEVDPETRLYPGGKYFDPFGLAV 240
Query: 186 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
D K + + EIK+ RLA++AF+ F + Q+A GPL
Sbjct: 241 DEIKKDRLNLAEIKHARLAMVAFLIFAI-QAAVTSKGPL 278
>gi|116792229|gb|ABK26282.1| unknown [Picea sitchensis]
Length = 288
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 108/219 (49%), Gaps = 52/219 (23%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W+PG P +LDGS GD+GFDPL LG+ E
Sbjct: 69 WLPGAKAPEWLDGSLVGDYGFDPLGLGKPSEYLQYDVDSLDQNLDLNLPGDLLGDFVGDP 128
Query: 80 -------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAA 126
L+R++E ELIH RWAML V+ + L E W A +
Sbjct: 129 DIKPSIQPYSEVFGLQRFRECELIHGRWAMLGVLGA-----LAVEGFTGIYWQDAGKVEL 183
Query: 127 VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSK 185
V G ++Y G +P+ + T+++IE L + ++E QR+ E DPE + YPGG FDP G +
Sbjct: 184 VEG--SSYFGFSLPF-NMSTLILIEVLLLGYIEFQRNAEVDPETRLYPGGKYFDPFGLAV 240
Query: 186 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
+ K + K+ EIK+ RLA++AF+ F + Q+A GPL
Sbjct: 241 EEIKKDRLKLAEIKHARLAMVAFLIFAI-QAAVTSKGPL 278
>gi|449442612|ref|XP_004139075.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
gi|449532766|ref|XP_004173351.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
Length = 273
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/264 (37%), Positives = 122/264 (46%), Gaps = 60/264 (22%)
Query: 15 AFPSVLSSSKSKFFTAVSLPAAANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDP 71
A PS SS KS F A AT AD W + YLDGS PGDFGFDP
Sbjct: 24 ARPSFGSSRKSASFVV-----RAEATPPVKQGADRQLWFASKQSLSYLDGSLPGDFGFDP 78
Query: 72 LRLGEVPENLERYKE------SELIHCRWAMLAVVSSKFFWILVPE---ALGLGNWVQAQ 122
L L + PE + E E+I+ R+AML + + PE +LGL A
Sbjct: 79 LGLSD-PEGTGGFIEPRWLAYGEVINGRFAMLGAAGA-----IAPEIFGSLGLIPPETAL 132
Query: 123 EWAAV----PGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEK---- 166
W P G Y P T+ V E + F EH+R SM K
Sbjct: 133 PWFKTGVIPPAGTYNYWADPY------TLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFL 186
Query: 167 ----------DPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQ 215
DP YPGG F+PLGF KD + +E K+KEIKNGRLA+LA +G+ + Q
Sbjct: 187 GLEKFLGGSGDP---AYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFI-Q 242
Query: 216 SAYPGTGPLENLATHLADPWHNNI 239
G GP +NL HL+DP +NN+
Sbjct: 243 GLVTGVGPYQNLLDHLSDPVNNNV 266
>gi|145079840|tpg|DAA05941.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Micromonas sp. CCMP490]
Length = 245
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 109/214 (50%), Gaps = 28/214 (13%)
Query: 30 AVSLPAAANATSKYAMSA--DWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
+V P A S A + W+PG P YLDG+ GD+GFDPLRLG+ E L +E+
Sbjct: 14 SVRAPVKARGMSVKAAAGPQHWLPGSEPPAYLDGTMAGDYGFDPLRLGQNAETLPYLQEA 73
Query: 88 ELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTI 147
EL++ RWAM A IL +A+GL + +A + A LG W L T+
Sbjct: 74 ELMNGRWAMHATAG-----ILFTDAVGLPKFWEAGDAA---------LGD---W-DLKTL 115
Query: 148 LVIEFLSIAFVE--HQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLAL 205
+ I+ + + F+E R E FDP G Q KVKEIKNGRLA+
Sbjct: 116 VAIQVVVMGFLEAARIRGFYATGESGVVGNFPFDPSG-----QDSPAMKVKEIKNGRLAM 170
Query: 206 LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
++F+G V Q A GT PLE L H+A+P NI
Sbjct: 171 MSFLGM-VSQYAVTGTSPLEGLKAHMANPTQVNI 203
>gi|302824061|ref|XP_002993677.1| light harvesting complex [Selaginella moellendorffii]
gi|300138500|gb|EFJ05266.1| light harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 108/228 (47%), Gaps = 55/228 (24%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSS 102
W YLDG+ PGD+GFDPL L + P + +E+I+ R+AML +
Sbjct: 62 WFASSQSLSYLDGTLPGDYGFDPLGLSD-PAGAGNFMTPNWLSYAEIINGRYAMLGAAGA 120
Query: 103 KFFWILVPEALG-LGNWVQAQEWAAV--------PGGQATYLGTPVPWGTLPTILVIEFL 153
+ PE G +G + QE A V P G Y P T+ +E
Sbjct: 121 -----IAPEIFGKIG--IIPQETAVVWFKTGVFPPAGTYNYWADPY------TLFFLEMA 167
Query: 154 SIAFVEHQR--------SMEK--------------DPEKKKYPGGAFDPLGFSKDPQKFE 191
+ F EH+R SM K DP YPGG F+P GF KD +
Sbjct: 168 LMGFAEHRRAQDFYKPGSMGKQYFLGFEKYLGGSGDPA---YPGGIFNPFGFGKDEKSMR 224
Query: 192 EYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
K+KE+KNGRLA+LA +G+ + Q+ + G GP +NL HLADP+ NNI
Sbjct: 225 TLKIKEVKNGRLAMLAILGYFI-QAPFTGVGPFQNLLDHLADPFANNI 271
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max]
gi|255646132|gb|ACU23552.1| unknown [Glycine max]
Length = 268
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 104/224 (46%), Gaps = 30/224 (13%)
Query: 39 ATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
T KY M D G R P YL G PGD+G+D L PE + +
Sbjct: 39 GTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRAL 98
Query: 88 ELIHCRWAMLAV-------VSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTP-- 138
E+IH RWAML V K+ + E + W +A GG YLG P
Sbjct: 99 EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPV----WFKAGAQIFSEGG-LDYLGNPNL 153
Query: 139 VPWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYK 194
V ++ +L + + + VE R D YPGG FDPLG + DP F E K
Sbjct: 154 VHAQSILAVLGFQVILMGLVEGYRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELK 213
Query: 195 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
VKEIKNGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 214 VKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 256
>gi|302839735|ref|XP_002951424.1| chlorophyll a/b-binding protein of photosystem II [Volvox carteri
f. nagariensis]
gi|300263399|gb|EFJ47600.1| chlorophyll a/b-binding protein of photosystem II [Volvox carteri
f. nagariensis]
Length = 317
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 116/242 (47%), Gaps = 57/242 (23%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGE--------VPEN------------- 80
KY A W+P RP +LDGS PGD GFDPL L + V EN
Sbjct: 83 KYQGDALWLPNTVRPEWLDGSLPGDRGFDPLGLAKPSEFVVIGVDENDQNAAKNNKGSVE 142
Query: 81 ------------------------LERYKESELIHCRWAMLAVVSSKFFWILVPEALGLG 116
L R++E ELIH RWAMLA + LV EA
Sbjct: 143 AVVTATPDEVSAENRLAPYSEVFGLARFRECELIHGRWAMLACLG-----CLVAEATTGV 197
Query: 117 NWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGG 176
+WV A + V A+Y G +P+ ++ ++ IE + + E R+ E +PEK+ YPGG
Sbjct: 198 SWVDAGK---VELDGASYAGLSLPF-SITQLIWIEVILVGGAEIYRNTETNPEKRCYPGG 253
Query: 177 AFDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPW 235
FDPL S+D ++ K EIK+ RLA+++F G+ V Q+ G G L +LA AD
Sbjct: 254 FFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYSV-QAFTTGEGALGSLA-KFADGL 311
Query: 236 HN 237
+N
Sbjct: 312 NN 313
>gi|303274210|ref|XP_003056428.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226462512|gb|EEH59804.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 250
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 125/258 (48%), Gaps = 48/258 (18%)
Query: 11 IATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSA----DWMPGEPRPPYLDGSAPGD 66
IA ++ P + S L + + + +A+SA ++ PG P +LDG+ GD
Sbjct: 3 IAVSSIPRSSNDSLKLSRARRRLVSRSTRSGLFAVSAAARPNFFPGSTPPKHLDGTMAGD 62
Query: 67 FGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALG-------LGNWV 119
+GFDPL LGE L+ Y+++EL+H RWAML V + PE +G L NW
Sbjct: 63 YGFDPLGLGEDKVALQWYQQAELVHARWAMLGVAG-----MAAPELVGNPFVDGPLPNWA 117
Query: 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP--E 169
+A + Y+ T+ V++ + + E +R S+ DP E
Sbjct: 118 EAPFFDG-------YIADA------NTLFVVQMFFMNWAEVRRWQDMKNPGSVHADPYDE 164
Query: 170 KKK-------YPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
+K YPGG F+P+G +K + + KEI NGRLA++A +G C Q GT
Sbjct: 165 NRKCTGSDVGYPGGGLFNPMGMAKSVADEKALRAKEIANGRLAMVAAMG-CFIQHDVTGT 223
Query: 222 GPLENLATHLADPWHNNI 239
GP+ NL H+ADP H I
Sbjct: 224 GPVANLKAHIADPVHVTI 241
>gi|671737|emb|CAA52749.1| Chloropyll a/b binding protein [Amaranthus hypochondriacus]
Length = 186
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 92/179 (51%), Gaps = 15/179 (8%)
Query: 70 DPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGN--WVQAQEWAAV 127
D L PE + +E E+IHCRWAML + F +L + G W +A
Sbjct: 1 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFS 60
Query: 128 PGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK------DPEKKKYPGGAFD 179
GG YLG P + ++ I + + + VE R DP YPGG+FD
Sbjct: 61 EGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFD 116
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
PLG + DP F E KVKEIKNG LA+ + GF V Q+ G GPLENLA HLADP +NN
Sbjct: 117 PLGLADDPDAFAELKVKEIKNGMLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 174
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max]
gi|255635333|gb|ACU18020.1| unknown [Glycine max]
Length = 267
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 104/224 (46%), Gaps = 30/224 (13%)
Query: 39 ATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
T KY M D G R P YL G PGD+G+D L PE + +
Sbjct: 38 GTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRAL 97
Query: 88 ELIHCRWAMLAV-------VSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTP-- 138
E+IH RWAML V K+ + E + W +A GG YLG P
Sbjct: 98 EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPV----WFKAGAQIFSEGG-LDYLGNPNL 152
Query: 139 VPWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYK 194
V ++ +L + + + VE R D YPGG FDPLG + DP F E K
Sbjct: 153 VHAQSILAVLGFQVILMGLVEGYRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELK 212
Query: 195 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
VKEIKNGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 213 VKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 255
>gi|145079550|tpg|DAA05918.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Mesostigma viride]
Length = 278
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 140/280 (50%), Gaps = 59/280 (21%)
Query: 6 LMSCGIATTAFPSVLSS----SKSKFFTAVSLPAA---ANATSKYAMSAD------WMPG 52
+ + +A+ + P+V+ ++ KF A AA A+ +K+ + A+ +
Sbjct: 1 MATAALASVSVPAVVCGKPAFAEKKFLGARVAAAARPQASKAAKFVVKAEKSDRQLFFSD 60
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSSKFFW 106
+ YLDGS PGDFG+DPL L + PE + + SE+IHCR+AML +
Sbjct: 61 KAAQSYLDGSKPGDFGYDPLGLYK-PEGAGGFIDPKWLAYSEVIHCRYAMLGMAG----- 114
Query: 107 ILVPEALGLGNWVQAQ------EWAAVPG-GQATYLGTPVPWGTLPTILVIEFLSIAFVE 159
++ PE LG + A+ + +P GQ Y +P+ + IE + + F E
Sbjct: 115 MVAPEILGKLGLIPAETGLVWFKTGVIPSEGQYDYWASPL------ALFWIEVVLMQFAE 168
Query: 160 HQRSME-KDPEKKK------------------YPGGA-FDPLGFSKDPQKFEEYKVKEIK 199
+R + + P + YPGGA F+ LG+ KD + + K+KE+K
Sbjct: 169 LRRWQDYRHPGSQSKQYFLGLEQFFGGSGDPSYPGGAIFNFLGYGKDEKSMNDLKLKELK 228
Query: 200 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
NGRLA++A +GF +Q A G GP +NL HLADP++NNI
Sbjct: 229 NGRLAMVATLGFFIQAMA-TGEGPFQNLTDHLADPFNNNI 267
>gi|312281753|dbj|BAJ33742.1| unnamed protein product [Thellungiella halophila]
Length = 265
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 103/223 (46%), Gaps = 34/223 (15%)
Query: 42 KYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELI 90
KY M D G R P YL G PGD+G+D L PE + + E+I
Sbjct: 39 KYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVI 98
Query: 91 HCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAV---------PGGQATYLGTP--V 139
H RWAML F + PE L WV+ + V G YLG P V
Sbjct: 99 HGRWAMLGA-----FGCITPEVLQ--KWVRVEFKEPVWFKAGSQIFSEGGLDYLGNPNLV 151
Query: 140 PWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKV 195
++ +L + + + VE R D YPGG FDPLG + DP F E KV
Sbjct: 152 HAQSILAVLGFQVILMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKV 211
Query: 196 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
KEIKNGRLA+ + GF V Q+ G GPLENL H+ DP NN
Sbjct: 212 KEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHIDDPVANN 253
>gi|302765457|ref|XP_002966149.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165569|gb|EFJ32176.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 100/197 (50%), Gaps = 21/197 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALG- 114
P YL G PGD+G+D L PE R + ELIH RWAML + F PE L
Sbjct: 62 PSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWAMLGALGCVF-----PEVLSK 116
Query: 115 -LGNWVQAQEW-----AAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
+G + + W G YLG P V ++ I + + + VE R +
Sbjct: 117 WVGVEFKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQVILMGLVEGYR-ING 175
Query: 167 DPEKKK----YPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
P+ + YPGG FDPLGF+ DP+ E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 176 LPDVGEGGDLYPGGQYFDPLGFADDPETLAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 234
Query: 222 GPLENLATHLADPWHNN 238
GPLENL HL +P NN
Sbjct: 235 GPLENLFDHLDNPVVNN 251
>gi|302800774|ref|XP_002982144.1| light-harvesting complex [Selaginella moellendorffii]
gi|300150160|gb|EFJ16812.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 100/197 (50%), Gaps = 21/197 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALG- 114
P YL G PGD+G+D L PE R + ELIH RWAML + F PE L
Sbjct: 62 PSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWAMLGALGCVF-----PEVLSK 116
Query: 115 -LGNWVQAQEW-----AAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
+G + + W G YLG P V ++ I + + + VE R +
Sbjct: 117 WVGVEFKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQVILMGLVEGYR-ING 175
Query: 167 DPEKKK----YPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
P+ + YPGG FDPLGF+ DP+ E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 176 LPDVGEGGDLYPGGQYFDPLGFADDPETLAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 234
Query: 222 GPLENLATHLADPWHNN 238
GPLENL HL +P NN
Sbjct: 235 GPLENLFDHLDNPVVNN 251
>gi|326510901|dbj|BAJ91798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/224 (38%), Positives = 116/224 (51%), Gaps = 45/224 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSS 102
W + YLDG+ PGDFGF+PL L + PE + E E+ + R AM+ VV
Sbjct: 51 WFASKQSLTYLDGTLPGDFGFNPLGLSD-PEGTGGFIEPRWLAYGEIFNGRTAMMGVVG- 108
Query: 103 KFFWILVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVE 159
++ PEALG V + A+P QA + GT W T+ V E I F E
Sbjct: 109 ----MIAPEALGKVGLVPPE--TAIPWFQAGAIPPAGTYQYWADPYTLFVFEMALIGFAE 162
Query: 160 HQR--------SMEK--------------DPEKKKYPGG-AFDPLGF-SKDPQKFEEYKV 195
H+R SM K DP YPGG F+PLGF +K ++ +E K+
Sbjct: 163 HRRLQDWYNPGSMGKQYFLGLEKYLGGSGDP---AYPGGPIFNPLGFGTKSEKEMKELKL 219
Query: 196 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
KEIKNGRLA+LAF+G + Q+ + G GP +NL HL+DP +NNI
Sbjct: 220 KEIKNGRLAMLAFLGMSL-QAIFTGVGPFQNLLDHLSDPVNNNI 262
>gi|307110371|gb|EFN58607.1| hypothetical protein CHLNCDRAFT_50418 [Chlorella variabilis]
Length = 212
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 106/203 (52%), Gaps = 37/203 (18%)
Query: 56 PPYLDG-SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL- 113
P +L G G+FGFDPL LG+ L+ Y ++EL + RWAML V ILV E L
Sbjct: 6 PAHLKGKDLAGNFGFDPLSLGKDEAALKWYTQAELQNGRWAMLGVAG-----ILVQELLH 60
Query: 114 --GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME------ 165
GLG W G T+ W T++ I FL A+ E R+ +
Sbjct: 61 KTGLGGKAADVYW--FDAGNNTF------WAPKETLIAISFLLFAWAECNRAQDYFKPGS 112
Query: 166 --KDPEKKK-------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQS 216
DP YPG FDPL F+K+ + +K+KEIKNGRLA+LAF+GF Q +
Sbjct: 113 NVSDPFGNSIKYVELGYPG--FDPLSFTKN--DYAGWKLKEIKNGRLAMLAFLGFVAQHN 168
Query: 217 AYPGTGPLENLATHLADPWHNNI 239
A PG+ PL+ LA HL++PW N+
Sbjct: 169 AQPGS-PLDQLADHLSNPWKNHF 190
>gi|302816085|ref|XP_002989722.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142499|gb|EFJ09199.1| light-harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 108/228 (47%), Gaps = 55/228 (24%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERY------KESELIHCRWAMLAVVSS 102
W YLDG+ PGD+GFDPL L + P + +E+I+ R+AML +
Sbjct: 62 WFASSQSLSYLDGTLPGDYGFDPLGLSD-PAGAGNFMTPNWLSYAEIINGRYAMLGAAGA 120
Query: 103 KFFWILVPEALG-LGNWVQAQEWAAV--------PGGQATYLGTPVPWGTLPTILVIEFL 153
+ PE G +G + Q+ A V P G Y P T+ +E
Sbjct: 121 -----IAPEIFGKIG--IIPQQTAVVWFKTGVFPPAGTYNYWADPY------TLFFLEMA 167
Query: 154 SIAFVEHQR--------SMEK--------------DPEKKKYPGGAFDPLGFSKDPQKFE 191
+ F EH+R SM K DP YPGG F+P GF KD +
Sbjct: 168 LMGFAEHRRAQDYYKPGSMGKQYFLGFEKYLGGSGDPA---YPGGIFNPFGFGKDEKSMR 224
Query: 192 EYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
K+KE+KNGRLA+LA +G+ + Q+ + G GP +NL HLADP+ NNI
Sbjct: 225 TLKIKEVKNGRLAMLAILGYFI-QAPFTGVGPFQNLLDHLADPFANNI 271
>gi|145078792|tpg|DAA05884.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Euglena gracilis]
Length = 295
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 92/197 (46%), Gaps = 30/197 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W P P YL G PGD GFDP L PE +R + +E+IH R AMLAVV + L
Sbjct: 88 WFPNVTPPAYLTGEFPGDRGFDPAGLSADPETFDRMRIAEIIHGRVAMLAVVGA-----L 142
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDP 168
VP+ LG GNW +A A + G L E R + K
Sbjct: 143 VPDFLGKGNWFEAPAIAGIDIGDVQQF----------------ILGYGVFEFGRGLNKSS 186
Query: 169 EKKK-YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
YPG FDPL + D K EIKNGRLAL A +GF VQ+ G+ PL NL
Sbjct: 187 NPAAIYPG--FDPLNLTSD-----YTKEAEIKNGRLALTAMLGFEVQRHVVGGS-PLANL 238
Query: 228 ATHLADPWHNNIGDVII 244
+ HL P NI D ++
Sbjct: 239 SDHLQQPLKFNIADSVM 255
>gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum]
gi|141448064|gb|ABO87611.1| chloroplast chlorophyll-a/b binding protein [Pisum sativum]
Length = 265
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 107/229 (46%), Gaps = 36/229 (15%)
Query: 37 ANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYK 85
A TSK+ M D G R P YL G PGD+G+D L PE + +
Sbjct: 34 AMGTSKFTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNR 93
Query: 86 ESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAV---------PGGQATYLG 136
E+IH RWAML + + PE L WV+ V G YLG
Sbjct: 94 ALEVIHGRWAMLGALGC-----ITPEVLQ--KWVRVDFKEPVWFKAGSQIFSEGGLDYLG 146
Query: 137 TP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPE----KKKYPGGA-FDPLGFSKDPQK 189
P V ++ +L + + + VE R + P+ YPGG FDPLG + DP
Sbjct: 147 NPNLVHAQSILAVLGFQIVLMGLVEGFR-INGLPDVGEGNDLYPGGQYFDPLGLADDPVT 205
Query: 190 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
F E KVKEIKNGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 206 FAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 253
>gi|168053458|ref|XP_001779153.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669412|gb|EDQ55999.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 98/188 (52%), Gaps = 20/188 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G D +L +PEN + + EL++ RWAML + LVPE +
Sbjct: 32 PEYLKGEYPGDYGCDIFKLVRLPENYAKLRSQELMNGRWAMLGITGC-----LVPELINS 86
Query: 116 G-------NWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
W + G YLG P + +L ++V++ L + E+ R ++
Sbjct: 87 NPTPGFEPVWFKTGAQIFSEAG-IDYLGVPGFINAHSLVAVIVVQALLMGVAEYAR-IKL 144
Query: 167 DPEKKK--YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
PE YPGG AFDPLGFS DP+ F E KVKEIKNGRLA++A G Q A G P
Sbjct: 145 SPEGNDAFYPGGKAFDPLGFSSDPESFAELKVKEIKNGRLAMMAMAGL-FAQGAVTGVSP 203
Query: 224 LENLATHL 231
L+NL L
Sbjct: 204 LQNLHDFL 211
>gi|297792877|ref|XP_002864323.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
gi|297310158|gb|EFH40582.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 265
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 117/266 (43%), Gaps = 41/266 (15%)
Query: 1 MASNTLMSCGIA--TTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPR--- 55
MAS S + TT +SS + VSL + KY M D G R
Sbjct: 1 MASTFTSSSSVLSPTTFLGQTKASSFNPLRDVVSL-----GSPKYTMGNDLWYGPDRVKY 55
Query: 56 --------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWI 107
P YL G PGD+G+D L PE + + E+IH RWAML F
Sbjct: 56 LGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA-----FGC 110
Query: 108 LVPEALGLGNWVQAQEWAAV---------PGGQATYLGTP--VPWGTLPTILVIEFLSIA 156
+ PE L WV+ V G YLG P V ++ +L + + +
Sbjct: 111 ITPEVLQ--KWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMG 168
Query: 157 FVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFC 212
VE R D YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF
Sbjct: 169 LVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFF 228
Query: 213 VQQSAYPGTGPLENLATHLADPWHNN 238
V Q+ G GPLENL HL +P NN
Sbjct: 229 V-QAIVTGKGPLENLLDHLDNPVANN 253
>gi|15239602|ref|NP_200238.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3 protein [Arabidopsis thaliana]
gi|5002210|gb|AAD37362.1|AF143691_1 type III chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|13605754|gb|AAK32870.1|AF361858_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1|AF372917_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|332009094|gb|AED96477.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
Length = 265
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 117/264 (44%), Gaps = 37/264 (14%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPR----- 55
MAS S + T + L +K+ F + + + KY M D G R
Sbjct: 1 MASTFTSSSSVLTPT--TFLGQTKASSFNPLR-DVVSLGSPKYTMGNDLWYGPDRVKYLG 57
Query: 56 ------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
P YL G PGD+G+D L PE + + E+IH RWAML F +
Sbjct: 58 PFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA-----FGCIT 112
Query: 110 PEALGLGNWVQAQEWAAV---------PGGQATYLGTP--VPWGTLPTILVIEFLSIAFV 158
PE L WV+ V G YLG P V ++ +L + + + V
Sbjct: 113 PEVLQ--KWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLV 170
Query: 159 EHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
E R D YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V
Sbjct: 171 EGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV- 229
Query: 215 QSAYPGTGPLENLATHLADPWHNN 238
Q+ G GPLENL HL +P NN
Sbjct: 230 QAIVTGKGPLENLLDHLDNPVANN 253
>gi|225436257|ref|XP_002273201.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis
vinifera]
Length = 274
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 109/227 (48%), Gaps = 52/227 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSS 102
W + YLDGS PGD+GFDPL L + PE + E E+I+ R+AML V +
Sbjct: 56 WFASKQSLTYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEVINGRYAMLGAVGA 114
Query: 103 KFFWILVPEALGLGNWV---QAQEWAAV----PGGQATYLGTPVPWGTLPTILVIEFLSI 155
+ PE LG + A W P G Y P T+ V E +
Sbjct: 115 -----IAPEILGKLGLIPPETALPWFKTGVFPPAGTYNYWADPY------TLFVFEMALM 163
Query: 156 AFVEHQR--------SMEK--------------DPEKKKYPGG-AFDPLGFSKDPQKFEE 192
F EH+R SM K DP YPGG F+PLGF KD + ++
Sbjct: 164 GFAEHRRFQDWANPGSMGKQYFLGLEKYLGGSGDPA---YPGGPLFNPLGFGKDEKSLKD 220
Query: 193 YKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
K+KE+KNGRLA+LA +G+ Q G GPL+NL HLADP +NNI
Sbjct: 221 LKLKEVKNGRLAMLAILGYFA-QGPVTGVGPLQNLLDHLADPVNNNI 266
>gi|195616522|gb|ACG30091.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 241
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 96/193 (49%), Gaps = 27/193 (13%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ G+P P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 60 LSGQP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P + ++ I + + + VE R
Sbjct: 119 RNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR--- 174
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
+ DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 175 -----------------IADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPVE 216
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 217 NLADHLADPVNNN 229
>gi|115794|sp|P27489.1|CB23_SOLLC RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type III CAB-13; Flags: Precursor
gi|19277|emb|CAA42818.1| LHCII type III [Solanum lycopersicum]
Length = 265
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 108/222 (48%), Gaps = 22/222 (9%)
Query: 37 ANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYK 85
A ++++ MS D G R P YL+G PGD+G+D L PE + +
Sbjct: 34 AMGSARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNR 93
Query: 86 ESELIHCRWAMLAVVSSKFFWIL---VPEALGLGNWVQAQEWAAVPGGQATYLGTP--VP 140
E+IH RWAML + F +L V W +A GG YLG P V
Sbjct: 94 ALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGG-LDYLGNPNLVH 152
Query: 141 WGTLPTILVIEFLSIAFVEHQR--SMEKDPEKKK-YPGGA-FDPLGFSKDPQKFEEYKVK 196
++ +L + + + VE R + E YPGG FDPLG + DP F E KVK
Sbjct: 153 AQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVK 212
Query: 197 EIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
EIKNGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 213 EIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 253
>gi|4689380|gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 106/224 (47%), Gaps = 30/224 (13%)
Query: 39 ATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
+ KY+MS + G R P YL G PGD+G+D L PE + +
Sbjct: 40 GSGKYSMSNELWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRAL 99
Query: 88 ELIHCRWAMLAV-------VSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTP-- 138
E+IH RWAML V K+ + E + W +A GG YLG P
Sbjct: 100 EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPV----WFKAGAQIFSEGG-LDYLGNPNL 154
Query: 139 VPWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYK 194
V ++ +L + + + VE R D YPGG FDPLG + DP F E K
Sbjct: 155 VHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLADDPATFAELK 214
Query: 195 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
VKEIKNGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 215 VKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 257
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 100/196 (51%), Gaps = 19/196 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL G PGD+G+D L PE+ R + ELIH RWAML + K+ +
Sbjct: 65 PSYLKGEFPGDYGWDTAGLSADPESFARNRALELIHGRWAMLGALGCITPELLQKYSRVT 124
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME- 165
+ E + W +A GG YLG P + ++ + ++ + + VE R+
Sbjct: 125 LKEPV----WFKAGAQIFSDGG-LDYLGNPNLIHAQSILAVWAVQVVLMGAVEAYRTNGL 179
Query: 166 --KDPEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
YPGG FDPLG + DP+ E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 180 PGVGEGGDLYPGGKYFDPLGLADDPETLAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 238
Query: 223 PLENLATHLADPWHNN 238
PLENL HLA+P NN
Sbjct: 239 PLENLLDHLANPVSNN 254
>gi|160713965|gb|ABX47018.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Bambusa
oldhamii]
Length = 267
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 107/227 (47%), Gaps = 30/227 (13%)
Query: 36 AANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERY 84
AA A + MS D G R P YL G PGD+G+D L PE R
Sbjct: 35 AAAANGRITMSNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARN 94
Query: 85 KESELIHCRWAMLAV-------VSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGT 137
+ E+IH RWAML V K+ + E + W +A GG YLG
Sbjct: 95 RALEVIHGRWAMLGALGCITPEVLQKWLRVDFKEPV----WFKAGAQIFSEGG-LDYLGN 149
Query: 138 P--VPWGTLPTILVIEFLSIAFVEHQR--SMEKDPEKKK-YPGGA-FDPLGFSKDPQKFE 191
P V ++ +L + + + VE R + E YPGG FDPLG + DP F
Sbjct: 150 PNLVHAQSILAVLGFQVILMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFA 209
Query: 192 EYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
E KVKEIKNGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 255
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 106/235 (45%), Gaps = 46/235 (19%)
Query: 36 AANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERY 84
AA A + MS D G R P YL G PGD+G+D L PE R
Sbjct: 35 AAAANGRITMSNDLWYGPDRLKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARN 94
Query: 85 KESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVP---------------G 129
+ E+IH RWAML + + PE L Q+W V
Sbjct: 95 RALEVIHGRWAMLGALGC-----ITPEVL--------QKWVRVSFKEPVWFKAGAQIFSE 141
Query: 130 GQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR--SMEKDPEKKK-YPGGA-FDPLGF 183
G YLG P V ++ +L + + + VE R + E YPGG FDPLG
Sbjct: 142 GGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGL 201
Query: 184 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
+ DP F E KVKEIKNGRLA+ + GF V Q+ G GPLENL H+ +P NN
Sbjct: 202 ADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHIDNPVANN 255
>gi|326511319|dbj|BAJ87673.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 91/175 (52%), Gaps = 15/175 (8%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 110 PEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRIAG 179
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF VQ
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 231
>gi|115791|sp|P09755.1|CB22_SOYBN RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18548|emb|CAA31418.1| chlorophyll a/b binding preprotein (AA -33 to 223) [Glycine max]
Length = 256
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 96/193 (49%), Gaps = 23/193 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G G L PE + +E E+IH RWAML + F +L +
Sbjct: 65 PSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 116
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 165
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 117 GEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 175
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 176 TDP---IYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 231
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 232 NLADHLADPVNNN 244
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera]
Length = 269
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 115/264 (43%), Gaps = 38/264 (14%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPR----- 55
MA+ S G+ T F S + V T K+ M + G R
Sbjct: 6 MAATASSSTGLRPTQFVGQTRGSNANQLREV----VPMGTGKFTMGNELWYGPDRVKYLG 61
Query: 56 ------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
P YL G PGD+G+D L PE R + E+IH RWAML F +
Sbjct: 62 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGA-----FGCIT 116
Query: 110 PEALGLGNWVQAQEWAAV---------PGGQATYLGTP--VPWGTLPTILVIEFLSIAFV 158
PE L WV+ V G YLG P V ++ +L + + + V
Sbjct: 117 PEVLE--KWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLV 174
Query: 159 EHQR--SMEKDPEKKK-YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
E R + E YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V
Sbjct: 175 EGYRINGLPGVGEGNDLYPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV- 233
Query: 215 QSAYPGTGPLENLATHLADPWHNN 238
Q+ G GPLENL HL +P NN
Sbjct: 234 QAIVTGKGPLENLLDHLDNPVANN 257
>gi|303281804|ref|XP_003060194.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
gi|226458849|gb|EEH56146.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
Length = 391
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 107/217 (49%), Gaps = 40/217 (18%)
Query: 44 AMSADWMPGEPRP---------PYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRW 94
AM A + GE RP P+L G+ GD GFDPLRLG+ PE+L R E EL+H RW
Sbjct: 167 AMEASPLYGEARPLLPGISSPPPHLTGTLAGDRGFDPLRLGKTPESLARGVELELLHARW 226
Query: 95 AMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVP----GGQATYLGTPVPWGTLPTILVI 150
AMLAVV + VPEAL + + A P G A G + +G L ++
Sbjct: 227 AMLAVVG-----VAVPEALSIAGALPEGAALAEPVWWKVGAAKLNGESLNYGGLGGFVIA 281
Query: 151 EFLSIAFV-----------EHQ-----RSMEKD----PEKKKYPGGA-FDPLGFSKDPQK 189
+A + E+ RS+E P YPGGA FDP G S D +
Sbjct: 282 GKQGVAVIAACQAVLMGGPEYARYVGIRSLEPVGVYLPGDANYPGGAPFDPFGLSDDADR 341
Query: 190 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
F KV EI++GRLA++A +G C Q+ G GP+ N
Sbjct: 342 FARQKVIEIEHGRLAMVAMLG-CFAQAIVTGEGPVAN 377
>gi|388520661|gb|AFK48392.1| unknown [Lotus japonicus]
Length = 270
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 103/226 (45%), Gaps = 34/226 (15%)
Query: 39 ATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
T KY M D G R P YL G PGD+G+D L PE + +
Sbjct: 41 GTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRAL 100
Query: 88 ELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAV---------PGGQATYLGTP 138
E+IH RWAML + + PE L WV+ V G YLG P
Sbjct: 101 EVIHGRWAMLGALGC-----ITPEVLE--KWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP 153
Query: 139 --VPWGTLPTILVIEFLSIAFVEHQR--SMEKDPEKKK-YPGGA-FDPLGFSKDPQKFEE 192
V ++ +L + L + VE R + E YPG FDPLG + DP F E
Sbjct: 154 NLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNNLYPGDQYFDPLGLADDPATFAE 213
Query: 193 YKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
KVKEIKNGRLA+ + GF V Q+ G GPLENL HL DP NN
Sbjct: 214 LKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDDPVANN 258
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 105/218 (48%), Gaps = 36/218 (16%)
Query: 51 PGEPRPP-------YLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSK 103
P PR P +L G+ GD GFDPL L + + +Y+E+EL+H RWAML VV
Sbjct: 180 PSRPRLPGPLGSAEHLIGAIAGDAGFDPLGLSKEQASFAKYQEAELLHARWAMLGVVGC- 238
Query: 104 FFWILVPEALGL-GNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQ- 161
LVPE L L G + W V G + WG + + I +
Sbjct: 239 ----LVPELLALRGVDLGEPVWWKV-GASKLNSDLTLNWGGIEGFRIAGKQGIGLIAACQ 293
Query: 162 ---------------RSMEKD----PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNG 201
RS+E P + YPGG FDPL ++ D F E VKE+KNG
Sbjct: 294 AVLMGGPEYARYVGIRSLEPVGVFLPGDQNYPGGGPFDPLNYAADADGFVEQAVKEVKNG 353
Query: 202 RLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
RLA+LA +GF V Q+A GP++N+ +ADP HNNI
Sbjct: 354 RLAMLAMLGFFV-QAAVTRVGPVQNVLDFVADPAHNNI 390
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 269
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 115/264 (43%), Gaps = 38/264 (14%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPR----- 55
MA+ S G+ T F S + V T K+ M + G R
Sbjct: 6 MAATASSSTGLRPTQFLGQTRGSNANQLREV----VPMGTGKFTMGNELWYGPDRVKYLG 61
Query: 56 ------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
P YL G PGD+G+D L PE R + E+IH RWAML F +
Sbjct: 62 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGA-----FGCIT 116
Query: 110 PEALGLGNWVQAQEWAAV---------PGGQATYLGTP--VPWGTLPTILVIEFLSIAFV 158
PE L WV+ V G YLG P V ++ +L + + + V
Sbjct: 117 PEVLE--KWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLV 174
Query: 159 EHQR--SMEKDPEKKK-YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
E R + E YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V
Sbjct: 175 EGYRINGLPGVGEGNDLYPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV- 233
Query: 215 QSAYPGTGPLENLATHLADPWHNN 238
Q+ G GPLENL HL +P NN
Sbjct: 234 QAIVTGKGPLENLLDHLDNPVANN 257
>gi|303280461|ref|XP_003059523.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226459359|gb|EEH56655.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 235
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 124/249 (49%), Gaps = 34/249 (13%)
Query: 3 SNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANAT-SKYAMSADWMPGEP-RPPYLD 60
+ T ++ A S + S++ F A ++ ++ A+ + A W+ P +LD
Sbjct: 5 TTTSLTAVSAVRGARSAFAGSRAAFVAAPAMKVSSRASLTVKAQRELWIKDSTVAPAHLD 64
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQ 120
G+ PGDFGFDPL LG P+ L+ Y+E+EL++ RWAM+AV I E LG+G
Sbjct: 65 GTLPGDFGFDPLGLGADPQRLKYYQEAELMNARWAMMAVAG-----ITATEVLGIG---- 115
Query: 121 AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR-----SMEKDPEKKKYPG 175
W V G A + P+ +L I+F + +E +R K ++P
Sbjct: 116 -PAWYDV--GAADFDFPPL------ALLAIQFPVMGILELKRIRGWLDTGKSGVVDQFP- 165
Query: 176 GAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPW 235
+DP+G + D VKEIKNGRLA++AFVG VQ Y GP+ L H+ DP+
Sbjct: 166 --WDPMGMNSDGM-----AVKEIKNGRLAMIAFVGIVVQAIVYR-EGPVAALKDHVTDPF 217
Query: 236 HNNIGDVII 244
N+ I+
Sbjct: 218 GCNMASNIM 226
>gi|87313237|gb|ABD37915.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas incerta]
Length = 259
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 104/216 (48%), Gaps = 55/216 (25%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGE--------VPEN------------- 80
KY A W+P RP +LDGS PGD GFDPL L + V EN
Sbjct: 52 KYQGDALWLPNTARPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNVGKNNKGTVE 111
Query: 81 ------------------------LERYKESELIHCRWAMLAVVSSKFFWILVPEALGLG 116
L R++E ELIH RWAMLA + + LV EA
Sbjct: 112 AIVQASPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGA-----LVAEATTGV 166
Query: 117 NWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGG 176
+WV+A V A+Y G +P+ ++ ++ IE + + E R+ E DPEK+ YPGG
Sbjct: 167 SWVEA---GKVELDGASYAGLSLPF-SITQLIWIEVILVGGAEFYRNTETDPEKRCYPGG 222
Query: 177 AFDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGF 211
FDPL S+D ++ K EIK+ RLA+++F G+
Sbjct: 223 VFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGY 258
>gi|310696692|gb|ADP06401.1| putative chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 175
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 91/173 (52%), Gaps = 15/173 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 7 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 65
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P + ++ I ++ + + VE R
Sbjct: 66 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 124
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF VQ
Sbjct: 125 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 174
>gi|168068370|ref|XP_001786045.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662226|gb|EDQ49142.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 95/175 (54%), Gaps = 18/175 (10%)
Query: 80 NLERYKESELIHCRWAMLAVVS-------SKFFWILVPEALGLGNWVQAQEWAAVPGGQA 132
+L+ Y+ ELIH RWA+L +KF + PEA+ W + + G
Sbjct: 30 SLKSYQAYELIHARWAILRAAGFVPPNAFNKFGSVCGPEAM----WWKTGALL-LEGDSI 84
Query: 133 TYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPE----KKKYPGGAFDPLGFSKDPQ 188
Y G VP L ++ E + E+ RS K P + +PGGAFDPLG +KDP
Sbjct: 85 KYFGATVPI-NLAAAVISEVNLVGGSEYYRSTNKSPLGSDLDRLHPGGAFDPLGLAKDPD 143
Query: 189 KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
+F KVKEI NGRLA+ + +GF V ++ G GP+ENLA HL+DP+ NN+ VI
Sbjct: 144 QFALLKVKEIMNGRLAMFSMLGFFV-KAYVTGEGPVENLAAHLSDPFGNNLLTVI 197
>gi|87313169|gb|ABD37881.1| light-harvesting chlorophyll-a/b binding protein Lhca4.1
[Mesostigma viride]
gi|145079679|tpg|DAA05923.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Mesostigma viride]
Length = 264
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 113/239 (47%), Gaps = 28/239 (11%)
Query: 9 CGIATTAFPSVLSSSKSKFF----TAVSLPAAANATS---KYAMSADWMPGEPRPPYLDG 61
+A+ A +V ++ F A + PA A S + + W G P YLDG
Sbjct: 2 AAVASIAASNVAVLARKAFVGQAVKASAKPAGAKPVSTVVRADLGKKWYTGAKPPAYLDG 61
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALG-LGNWVQ 120
S PGD+G+DPLR+G PE L+ Y++ E+ + RWAM+ V F L + L +W +
Sbjct: 62 SMPGDYGYDPLRMGGNPELLKWYQQGEIENGRWAMIGVAGMLFTDALTQFGISDLPDWYE 121
Query: 121 AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDP 180
A G +P L T++ IE A VE R KK G D
Sbjct: 122 A--------GAVAQASSPF---DLQTLIAIEIFVFATVEGFRI---STWKKTGKPGFLDI 167
Query: 181 LGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+G + ++KEIKNGRLA+ AFVGF V Q G GP+E L HL +P NN+
Sbjct: 168 MGMDS-----PDMRLKEIKNGRLAMFAFVGF-VAQYFVNGMGPVEGLLNHLENPQQNNV 220
>gi|7271947|gb|AAF44703.1|AF241525_1 chlorophyll a/b-binding protein type III [Alonsoa meridionalis]
Length = 193
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 105/205 (51%), Gaps = 44/205 (21%)
Query: 65 GDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSSKFFWILVPEALGLGNW 118
GDFGFDPL L + PE + E E+I+ R+AML V + + PE LG
Sbjct: 1 GDFGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRFAMLGAVGA-----IAPEILGKAGL 54
Query: 119 VQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEK- 166
+ A+ A+P Q + GT W T+ V+E + F EH+R SM K
Sbjct: 55 IPAE--TALPWFQTGVIPPAGTYNYWADGYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ 112
Query: 167 -------------DPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFC 212
DP YPGG F +PLGF KD + +E K+KE+KNGRLA+LA +G+
Sbjct: 113 YFLGLEKGLGGSGDP---AYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYF 169
Query: 213 VQQSAYPGTGPLENLATHLADPWHN 237
+ Q G GP +NL HLADPWHN
Sbjct: 170 I-QGLVTGVGPFQNLLDHLADPWHN 193
>gi|19423289|gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 95/198 (47%), Gaps = 24/198 (12%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P Y PGD+G+D L PE +RY+E ELIH RWAML + +L
Sbjct: 58 PAYRLAKFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQF 117
Query: 116 GN--WVQAQEWAAVPGGQATYLGTPVPW---------GTLPTILVIEFLSIAFVEHQRSM 164
G W +A GG YLG P G IL + VE R +
Sbjct: 118 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIRRHPGRFKVIL------MGLVEGYR-V 169
Query: 165 EKDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
P + YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 170 NGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTG 228
Query: 221 TGPLENLATHLADPWHNN 238
GP++NL HL++P NN
Sbjct: 229 KGPIQNLDDHLSNPTVNN 246
>gi|56809383|gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein Lhcb3 [Pisum
sativum]
Length = 265
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 106/229 (46%), Gaps = 36/229 (15%)
Query: 37 ANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYK 85
A T K+ M D G R P YL G PGD+G+D L PE + +
Sbjct: 34 AMGTPKFTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNR 93
Query: 86 ESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAV---------PGGQATYLG 136
E+IH RWAML + + PE L WV+ V G YLG
Sbjct: 94 ALEVIHGRWAMLGALGC-----ITPEVLQ--KWVRVDFKEPVWFKAGSQIFSEGGLDYLG 146
Query: 137 TP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPE----KKKYPGGA-FDPLGFSKDPQK 189
P V ++ +L + + + VE R + P+ YPGG FDPLG + DP
Sbjct: 147 NPNLVHAQSILAVLGFQIVLMGLVEGFR-INGLPDVGEGNDLYPGGQYFDPLGLADDPVT 205
Query: 190 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
F E KVKEIKNGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 206 FAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 253
>gi|168049224|ref|XP_001777064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671629|gb|EDQ58178.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 110/211 (52%), Gaps = 38/211 (18%)
Query: 58 YLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSSKFFWILVPE 111
YLDG+ PGD+GFDPL L + PE + + +E+I+ R+AML + + PE
Sbjct: 16 YLDGTLPGDYGFDPLGLMD-PEGAGGFIDPQWLPYAEIINGRFAMLGAAGA-----IAPE 69
Query: 112 ALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
LG + + A+P Q+ + G W T+ V+E + F EH+R
Sbjct: 70 VLGRIGLIPQE--TAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAEHRRAQDYYK 127
Query: 163 --SMEKD-----------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAF 208
SM K YPGG F+ LGF K+ ++ +E KVKE+KNGRLA++A
Sbjct: 128 PGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMMAV 187
Query: 209 VGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+G+ Q+ + G GP +NL HLADP HNN+
Sbjct: 188 LGYFT-QAIFTGVGPFQNLLDHLADPVHNNV 217
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 268
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 117/264 (44%), Gaps = 39/264 (14%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPR----- 55
MA+ S + T F SS + VS+ KY M + G R
Sbjct: 6 MAATASSSSVLRPTPFLGQRGSSANPLKDVVSM-----GNGKYIMGNELWYGPDRVKYLG 60
Query: 56 ------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
P YL+G PGD+G+D L PE R + E+IH RWAML + +
Sbjct: 61 PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC-----IT 115
Query: 110 PEALGLGNWVQAQEWAAV---------PGGQATYLGTP--VPWGTLPTILVIEFLSIAFV 158
PE L WV+ V G YLG P V ++ +L + + + V
Sbjct: 116 PEVLE--KWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLV 173
Query: 159 EHQR--SMEKDPEKKK-YPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
E R + E YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V
Sbjct: 174 EGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV- 232
Query: 215 QSAYPGTGPLENLATHLADPWHNN 238
Q+ G GPLENL HL +P NN
Sbjct: 233 QAIVTGKGPLENLLDHLDNPVANN 256
>gi|384248209|gb|EIE21694.1| hypothetical protein COCSUDRAFT_67011 [Coccomyxa subellipsoidea
C-169]
Length = 316
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 112/225 (49%), Gaps = 55/225 (24%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLG-----------EVPEN----------------- 80
W+P RP +LDGS PGD GFDPL L ++ +N
Sbjct: 81 WLPNTERPAWLDGSLPGDRGFDPLGLSSPQDYLQVGIDQLDQNKAVNKAGAIVGKFAAPK 140
Query: 81 ----------------LERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEW 124
L+R++E+ELIH RWAML + +LV EA +WV A +
Sbjct: 141 TKISDTALQPYDEVFGLQRFRETELIHGRWAMLGALG-----VLVAEASTGVSWVDAGK- 194
Query: 125 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 184
V A YLG +P+ ++ ++ IE + + E R+ E +P+ + YPGG FDPLG +
Sbjct: 195 --VELDGAQYLGFSLPF-SISQLVWIEAILVGGAEIYRNRELEPQARIYPGGYFDPLGLA 251
Query: 185 K-DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
D + + K E+K+GRLA++AF+GF VQ A G G L +LA
Sbjct: 252 TGDDARAFKLKEAELKHGRLAMIAFLGFGVQALA-TGQGALGSLA 295
>gi|168065932|ref|XP_001784899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663529|gb|EDQ50288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 110/211 (52%), Gaps = 38/211 (18%)
Query: 58 YLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSSKFFWILVPE 111
YLDG+ PGD+GFDPL L + PE + + +E+I+ R+AML + + PE
Sbjct: 16 YLDGTLPGDYGFDPLGLMD-PEGAGGFIDPQWLPYAEIINGRFAMLGAAGA-----IAPE 69
Query: 112 ALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
LG + + A+P Q+ + G W T+ V+E + F EH+R
Sbjct: 70 VLGRIGLIPQE--TAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAEHRRAQDYYK 127
Query: 163 --SMEKD-----------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAF 208
SM K YPGG F+ LGF K+ ++ +E KVKE+KNGRLA++A
Sbjct: 128 PGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMMAV 187
Query: 209 VGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+G+ Q+ + G GP +NL HLADP HNN+
Sbjct: 188 LGYFT-QAIFTGVGPFQNLLDHLADPVHNNV 217
>gi|371721828|gb|AEX55237.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Allium
sativum]
Length = 261
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 95/204 (46%), Gaps = 35/204 (17%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE R + E+IH RWAML + + PE L
Sbjct: 60 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC-----ITPEVL-- 112
Query: 116 GNWVQAQEWAAV---------------PGGQATYLGTP--VPWGTLPTILVIEFLSIAFV 158
Q+W V G YLG P V ++ +L + L + V
Sbjct: 113 ------QKWVNVNFKEPVWFKAGAQIFSQGGLDYLGNPNLVHAQSILAVLGFQVLLMGAV 166
Query: 159 EHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
E R D YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V
Sbjct: 167 EGFRINGLDGVGNGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV- 225
Query: 215 QSAYPGTGPLENLATHLADPWHNN 238
Q+ G GPLEN HL +P NN
Sbjct: 226 QAIVTGKGPLENWLDHLDNPVANN 249
>gi|163914163|dbj|BAF95850.1| putative chloroplast chlorophyll a/b binding protein [Vitis hybrid
cultivar]
Length = 234
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 90/173 (52%), Gaps = 15/173 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 162
+ G W +A GG YLG P V ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWASQVILMGAVEGYRIGGGP 180
Query: 163 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF VQ
Sbjct: 181 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 230
>gi|398313943|emb|CCI55398.1| PSI antenna protein Lhca3 [Marchantia polymorpha]
Length = 279
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 110/215 (51%), Gaps = 46/215 (21%)
Query: 58 YLDGSAPGDFGFDPLRL-------GEVPENLERYKESELIHCRWAMLAVVSSKFFWILVP 110
YLDGS PGD+GFDPL L G + N RY +E+I+ R+AML + + P
Sbjct: 71 YLDGSLPGDYGFDPLGLSDPQGAGGFIDPNWLRY--AEIINGRFAMLGAAGA-----IAP 123
Query: 111 EALGLGNWVQAQEWAAVPGGQATY---LGTPVPWGTLPTILVIEFLSIAFVEHQR----- 162
E G + + A+P Q LG W T+ V+E + F EH+R
Sbjct: 124 EIFGKIGLIPQE--TAIPWFQTGVIPPLGQYSYWADPYTLFVLEMALMGFAEHRRAQDYY 181
Query: 163 ---SMEK--------------DPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLA 204
SM K DP YPGG F+ LGF +D + ++ KVKE+KNGRLA
Sbjct: 182 KPGSMGKQYFLGFEKVLGGSGDPA---YPGGPLFNFLGFGRDEKSMKDLKVKEVKNGRLA 238
Query: 205 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+LA +G+ + Q+ + G GP +NL HL+DP +NN+
Sbjct: 239 MLAVLGYFI-QAIFTGVGPFQNLLDHLSDPANNNV 272
>gi|87313175|gb|ABD37884.1| light-harvesting chlorophyll-a/b binding protein Lhca5.2
[Mesostigma viride]
gi|145079736|tpg|DAA05927.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Mesostigma viride]
Length = 225
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 123/241 (51%), Gaps = 33/241 (13%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLD 60
MA+ T+ G+ +A P + +S F AA + T + A W+P P +L+
Sbjct: 1 MAAATVAMAGV--SAAPLLKAS-----FGVKKATAARDVTVRAADRTLWLPNTVPPAHLN 53
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQ 120
G+ PGD+G+DP+ L P+ L + E+E + RWAM V IL +AL +G
Sbjct: 54 GTLPGDYGYDPIGLATDPDRLAWFVEAERTNGRWAMAGVAG-----ILFTDALHIG---- 104
Query: 121 AQEWAAVPGGQATYLGTPVP-WGTLPTILVIEFLSIAFVEHQR--SMEKDPEKKKYPGGA 177
+ W ++ L +P+P WG + IEF+ F+E +R +K +
Sbjct: 105 SAPWFSI----GAELESPIPLWG----LATIEFVIFGFLEMKRLEGWKKTGQNGLLNWFP 156
Query: 178 FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 237
FDPLG + +E VKE+KNGRLA+ A+ GF V Q+ GP+ NL H+ADP++N
Sbjct: 157 FDPLGMNS-----KEMMVKEVKNGRLAMFAWCGFMV-QALVTREGPVTNLEKHIADPFNN 210
Query: 238 N 238
N
Sbjct: 211 N 211
>gi|307105262|gb|EFN53512.1| hypothetical protein CHLNCDRAFT_56266 [Chlorella variabilis]
Length = 276
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 112/231 (48%), Gaps = 55/231 (23%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPL-----------RLGEVPEN---------- 80
+Y A W+P RP +LDGS PGD GFDPL L ++ +N
Sbjct: 49 QYDGDALWLPNTSRPAWLDGSLPGDRGFDPLGLSKPVEYLQVDLDQLEQNNAVNKAGSVV 108
Query: 81 -----------------------LERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGN 117
L+R++E+ELIH RWAMLA + + LV E + +
Sbjct: 109 GSFTPVIDEVSAVPLAPYSEVFGLQRFRENELIHGRWAMLACLGA-----LVQEGVTGDS 163
Query: 118 WVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA 177
WV AQ Y G +P+ ++ + + + + VE R+ E DPEK+ YPGG
Sbjct: 164 WVAAQTLVY---DSPQYAGVELPF-SIYNLAIANSVLMGGVELFRNGELDPEKRCYPGGV 219
Query: 178 FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
FDPL S D ++ ++ + EIK+ RLA++ F+G+ V Q+ Y G G L +L
Sbjct: 220 FDPLSLASDDSERTDKLREAEIKHARLAMVGFLGYTV-QAWYTGEGALGSL 269
>gi|225461315|ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 266
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 105/225 (46%), Gaps = 32/225 (14%)
Query: 39 ATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
T KY M + G R P YL G PGD+G+D L PE R +
Sbjct: 37 GTGKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 96
Query: 88 ELIHCRWAMLAV-------VSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTP-- 138
E+IH RWAML V K+ + E + W +A GG YLG P
Sbjct: 97 EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPI----WFKAGAQIFSEGG-LDYLGNPNL 151
Query: 139 VPWGTLPTILVIEFLSIAFVEHQRSMEKDPE----KKKYPGGA-FDPLGFSKDPQKFEEY 193
V ++ +L + + + VE R + P YPGG FDPLG + DP F E
Sbjct: 152 VHAQSILAVLGFQVVLMGLVEGFR-INGLPGVGDGNNLYPGGQYFDPLGLADDPVTFAEL 210
Query: 194 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
KVKEIKNGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 211 KVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 254
>gi|553065|gb|AAA65447.1| chlorophyll a/b binding protein, partial [Euglena gracilis]
Length = 334
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 90/174 (51%), Gaps = 24/174 (13%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D LG P L RY+E+E+IH RWAML + ++ PE L
Sbjct: 169 PAYLTGELPGDYGWDTAGLGADPVTLARYREAEVIHARWAMLGALG-----VVTPELLA- 222
Query: 116 GNWVQAQEWAA--VPGGQA------TYLGTPVPWGTLPTILVIEFLS----IAFVEHQRS 163
GN V E A G Q YLG P +V+ FLS + VE R
Sbjct: 223 GNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSL--IHAQSVVLTFLSTLAIMGAVEGYRY 280
Query: 164 MEK----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 213
D + YPGG FDPLG + DP F E KVKE+KNGRLA++A +GF V
Sbjct: 281 GGGWPLGDDLDRLYPGGPFDPLGLANDPDAFAELKVKEVKNGRLAMVAMLGFYV 334
>gi|168049170|ref|XP_001777037.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671602|gb|EDQ58151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 242
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 110/211 (52%), Gaps = 38/211 (18%)
Query: 58 YLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSSKFFWILVPE 111
YLDG+ PGD+GFDPL L + PE + + +E+I+ R+AML + + PE
Sbjct: 34 YLDGTLPGDYGFDPLGLMD-PEGAGGFIDPQWLPYAEIINGRFAMLGAAGA-----IAPE 87
Query: 112 ALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR------ 162
LG + + A+P Q+ + G W T+ V+E + F EH+R
Sbjct: 88 VLGRIGLIPQE--TAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAEHRRAQDYYK 145
Query: 163 --SMEKD-----------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAF 208
SM K YPGG F+ LGF K+ ++ +E KVKE+KNGRLA++A
Sbjct: 146 PGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMMAV 205
Query: 209 VGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+G+ Q+ + G GP +NL HLADP HNN+
Sbjct: 206 LGYFT-QAIFTGVGPFQNLLDHLADPVHNNV 235
>gi|412985267|emb|CCO20292.1| unknown [Bathycoccus prasinos]
Length = 277
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 104/229 (45%), Gaps = 58/229 (25%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W P P +LDGS PGD GFDP L + E L+
Sbjct: 56 WYPNAEAPAWLDGSMPGDRGFDPFGLSKPTEYLQFDLDRLDGSAAKNPSGNVIGKLKKTD 115
Query: 83 ------------------RYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEW 124
R++E EL+H RWAML +V ++ EA G V Q+
Sbjct: 116 NKPTERTIVPFNEAFDINRFRECELLHSRWAMLGLVG-----VIFGEA---GTGVAWQDA 167
Query: 125 AAVPGGQATYLGTPVPWG---TLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPL 181
V Q YLG + WG L + IE L + +E RS E D EK+ YPGGAFDPL
Sbjct: 168 GKVELEQTQYLGFNL-WGEGSNLAALTAIEVLLVGTLEFYRSAELDQEKRCYPGGAFDPL 226
Query: 182 GF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 229
GF SK P++ K E+K+GRLA++A G QQ+ G G LE L +
Sbjct: 227 GFASKSPEETFRLKTAELKHGRLAMVAMFG-VAQQALNNGEGALEALTS 274
>gi|145079801|tpg|DAA05936.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Micromonas sp. CCMP490]
Length = 333
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 105/204 (51%), Gaps = 33/204 (16%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P Y++G+ GD+GFDPL+LG+ + +Y+ +E+ H RWAMLAV +++PEALG+
Sbjct: 129 PSYMNGTLAGDYGFDPLQLGK-DGKIAQYRIAEVQHARWAMLAVPG-----VVIPEALGV 182
Query: 116 --GNWVQ-AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDP---- 168
GNW + + + G+ LG P IE +A VE RS + +
Sbjct: 183 PGGNWTETGKVFLDGEAGRPEILGNPY------LFTAIEVALLAGVEGYRSGKLEAPAGF 236
Query: 169 -------EKKKY-------PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
E K + PGG D L + P+ KVKEIKNGRLA++A +G VQ
Sbjct: 237 APIYGKFEGKDFKGLDPINPGGPLDFLNVASTPEDLAILKVKEIKNGRLAMIAMLGVFVQ 296
Query: 215 QSAYPGTGPLENLATHLADPWHNN 238
+ G GP N A H+ADP+ N
Sbjct: 297 GATTGGEGPATNWAKHVADPFAYN 320
>gi|302143082|emb|CBI20377.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 103/224 (45%), Gaps = 30/224 (13%)
Query: 39 ATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
T KY M + G R P YL G PGD+G+D L PE R +
Sbjct: 2 GTGKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 61
Query: 88 ELIHCRWAMLAV-------VSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTP-- 138
E+IH RWAML V K+ + E + W +A GG YLG P
Sbjct: 62 EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPI----WFKAGAQIFSEGG-LDYLGNPNL 116
Query: 139 VPWGTLPTILVIEFLSIAFVEHQRSME---KDPEKKKYPGGA-FDPLGFSKDPQKFEEYK 194
V ++ +L + + + VE R YPGG FDPLG + DP F E K
Sbjct: 117 VHAQSILAVLGFQVVLMGLVEGFRINGLPGVGDGNNLYPGGQYFDPLGLADDPVTFAELK 176
Query: 195 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
VKEIKNGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 177 VKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 219
>gi|224122902|ref|XP_002330392.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222871777|gb|EEF08908.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 117/264 (44%), Gaps = 39/264 (14%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPR----- 55
MAS S + T F S+ + VS+ KY MS + G R
Sbjct: 1 MASLASSSTIVRPTPFLGKRGSNANPLRDVVSM-----GNGKYIMSNELWYGPDRVKYLG 55
Query: 56 ------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
P YL G PGD+G+D L PE + + E+IH RWAML + +
Sbjct: 56 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGC-----IT 110
Query: 110 PEALGLGNWVQAQEWAAV---------PGGQATYLGTP--VPWGTLPTILVIEFLSIAFV 158
PE L WV+ V G YLG P V ++ +L + + + V
Sbjct: 111 PEVLE--KWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLV 168
Query: 159 EHQR--SMEKDPEKKK-YPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
E R + E YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V
Sbjct: 169 EGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFV- 227
Query: 215 QSAYPGTGPLENLATHLADPWHNN 238
Q+ G GPLENL HL +P NN
Sbjct: 228 QAIVTGKGPLENLLDHLDNPVANN 251
>gi|160713967|gb|ABX47019.1| chloroplast chlorophyll a/b binding protein cab-BO3-1 [Bambusa
oldhamii]
Length = 267
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 105/229 (45%), Gaps = 34/229 (14%)
Query: 36 AANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERY 84
AA A + MS D G R P YL G GD+G+D L PE R
Sbjct: 35 AAAANGRITMSNDLWYGPDRVKYLGPFSAQTPSYLTGEFAGDYGWDTAGLSADPEAFARN 94
Query: 85 KESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQ----EWAAVPG-----GQATYL 135
+ E+IH RWAML + + PE L WV+ W G YL
Sbjct: 95 RALEVIHGRWAMLGALGC-----ITPEVLE--KWVRVDFKEPVWFKAGAQIFSEGGLDYL 147
Query: 136 GTP--VPWGTLPTILVIEFLSIAFVEHQR--SMEKDPEKKK-YPGGA-FDPLGFSKDPQK 189
G P V ++ +L + + + VE R + E YPGG FDPLG + DP
Sbjct: 148 GNPNLVHAQSILAVLGFQVILMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGLADDPVT 207
Query: 190 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
F E +VKEIKNGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 208 FAELRVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 255
>gi|145345103|ref|XP_001417062.1| chlorophyll a/b binding, maybe photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144577288|gb|ABO95355.1| chlorophyll a/b binding, maybe photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 252
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 95/191 (49%), Gaps = 23/191 (12%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P YLDG+ GD+GFDPLRLG PE L +E+EL++ RWAM A IL
Sbjct: 43 WYPGAVAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAG-----IL 97
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDP 168
+A+GL W +A G Y + + L V+ +SI R K
Sbjct: 98 FTDAVGLPKWWEA--------GAVDY---GMDFQQLVGFQVVA-MSILEAARTRGFMKSG 145
Query: 169 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
E FDP G P K +VKE+KN RLA++AF+G V Q A G PLE L
Sbjct: 146 ESGVLNAFPFDPAGLDA-PDK----RVKEVKNARLAMVAFLG-MVSQYAVTGLSPLEGLE 199
Query: 229 THLADPWHNNI 239
H+A+P N+
Sbjct: 200 AHMANPQAVNL 210
>gi|62733870|gb|AAX95979.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|77549543|gb|ABA92340.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 225
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 88/188 (46%), Gaps = 57/188 (30%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL+G PGD+G+DP L + PE+ +Y+ ELIH R
Sbjct: 85 PDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHAR---------------------- 122
Query: 116 GNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPG 175
W + GG Y +I L D E K +PG
Sbjct: 123 --------WVVLVGGAEYYR-------------IINGL-------------DLEDKLHPG 148
Query: 176 GAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPW 235
G FDPLG + DP + KVKEIKNGRLA+ + +GF + Q+ G GP+ENL+ HL+DP+
Sbjct: 149 GPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFI-QAYVTGEGPVENLSKHLSDPF 207
Query: 236 HNNIGDVI 243
NN+ VI
Sbjct: 208 GNNLLTVI 215
>gi|195613254|gb|ACG28457.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|238013956|gb|ACR38013.1| unknown [Zea mays]
gi|413954858|gb|AFW87507.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 267
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 106/227 (46%), Gaps = 52/227 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSS 102
W + YLDG+ PGD+GFDPL L + PE + E E+I+ R+AML V +
Sbjct: 50 WFASKQSLSYLDGTLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 108
Query: 103 KFFWILVPEALGLGNWV---QAQEWAAV----PGGQATYLGTPVPWGTLPTILVIEFLSI 155
+ PE G + A W P G Y W T+ V +
Sbjct: 109 -----IAPEIFGKMGIIPPETALPWFKTGVIPPAGTYNY------WADSYTLFVFNMALM 157
Query: 156 AFVEHQR--------SMEK--------------DPEKKKYPGG-AFDPLGFSKDPQKFEE 192
F EH+R SM K DP YPGG F+PLGF K ++ E
Sbjct: 158 GFAEHRRLQDWYNPGSMGKQYFLGLEKFLAGSGDPS---YPGGPLFNPLGFGKTEKEMNE 214
Query: 193 YKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
K+KEIKNGRLA+LA +G+ + Q G GP +NL HLADP +NN+
Sbjct: 215 LKLKEIKNGRLAMLAILGYFI-QGLVTGVGPFQNLLDHLADPVNNNV 260
>gi|405617|emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [Brassica napus]
Length = 221
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 96/198 (48%), Gaps = 23/198 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PG++G+D L PE + + E+IH RWAML F + PE L
Sbjct: 20 PSYLTGEFPGEYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA-----FGCITPEVLQ- 73
Query: 116 GNWVQAQEWAAV---------PGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSM 164
WV+ V G YLG P V ++ +L + + + VE R
Sbjct: 74 -KWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGLRIN 132
Query: 165 EKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
D YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 133 GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTG 191
Query: 221 TGPLENLATHLADPWHNN 238
GPLENL HL +P NN
Sbjct: 192 KGPLENLLDHLDNPVANN 209
>gi|118489770|gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 302
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS-------SKFFWIL 108
P YL G PGD+G+DP L + P++ E+Y+ ELIH RWAML +KF
Sbjct: 92 PEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWAMLGAAGFIIPEAFNKFGANC 151
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D 167
PEA+ W + + G Y G +P L +V E + + E+ R
Sbjct: 152 GPEAV----WFKTGALL-LDGNTLNYFGKNIPI-NLVLAVVAEVILVGGAEYFRITNGLG 205
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
+ K +PGG FDPLG +KDP + KVKEIKNGRLA+ A +GF +Q
Sbjct: 206 FDDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFFLQ 252
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 177 AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQS 216
+DP G SK P FE+Y+ E+ + R A+L GF + ++
Sbjct: 104 GYDPFGLSKKPDDFEKYQAFELIHARWAMLGAAGFIIPEA 143
>gi|302584050|gb|ADL57411.1| chloroplast LHCII type I chlorophyll a-b binding precursor protein
[Ipomoea nil]
Length = 179
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 90/170 (52%), Gaps = 15/170 (8%)
Query: 79 ENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGN--WVQAQEWAAVPGGQATYLG 136
E + +E E+IH RWAML + F +L + G W +A GG YLG
Sbjct: 3 ETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGG-LDYLG 61
Query: 137 TP--VPWGTLPTILVIEFLSIAFVEHQRSME------KDPEKKKYPGGAFDPLGFSKDPQ 188
P + ++ I + + + VE R DP YPGG+FDPLG + DP+
Sbjct: 62 NPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDP---LYPGGSFDPLGLADDPE 118
Query: 189 KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
F E KVKE+KNGRLA+ + GF V Q+ G GPLENLA HLADP +NN
Sbjct: 119 AFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 167
>gi|307110008|gb|EFN58245.1| hypothetical protein CHLNCDRAFT_34387 [Chlorella variabilis]
Length = 336
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 103/196 (52%), Gaps = 32/196 (16%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P +L G PGD+G+DP LG P L+RY E EL+H RWAML + + +VPE L
Sbjct: 140 PQHLSGELPGDYGWDPAGLGRDPAKLDRYVELELLHARWAMLGALGA-----VVPELLQL 194
Query: 114 -GLGNWVQAQEWAA-----VPGGQATYLGTP---VPWGTLPTILVIEFLSIAFV---EHQ 161
G +++ + W G + YLG P V G + +I F + + E+
Sbjct: 195 AGSATFLEDRWWNVGYAKLTTGEELAYLGVPGLRVAGGQ--GVAIIAFCQVLLMFGPEYA 252
Query: 162 RSMEKD---------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGF 211
R+ P K YPGG FDPL S D +++E +V+EIKNGRLA++A++GF
Sbjct: 253 RACGISALEPLGVFLPGDKNYPGGWLFDPLQLSGDAERYEAMRVREIKNGRLAMVAWLGF 312
Query: 212 CVQQSAYPGTGPLENL 227
Q+A GP++NL
Sbjct: 313 AA-QAAVTRQGPVQNL 327
>gi|79320443|ref|NP_001031217.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195726|gb|AEE33847.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 218
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 105/207 (50%), Gaps = 38/207 (18%)
Query: 62 SAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSSKFFWILVPEALGL 115
S PGD+GFDPL L + PE + E E+I+ R+AML + + PE LG
Sbjct: 14 SLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGA-----IAPEILGK 67
Query: 116 GNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SM 164
+ A+ A+P Q + GT W T+ V+E + F EH+R SM
Sbjct: 68 AGLIPAE--TALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSM 125
Query: 165 EKD-----------PEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFC 212
K YPGG F +PLGF KD + +E K+KE+KNGRLA+LA +G+
Sbjct: 126 GKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYF 185
Query: 213 VQQSAYPGTGPLENLATHLADPWHNNI 239
+ Q G GP +NL HLADP +NN+
Sbjct: 186 I-QGLVTGVGPYQNLLDHLADPVNNNV 211
>gi|224117282|ref|XP_002317529.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222860594|gb|EEE98141.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 97/198 (48%), Gaps = 23/198 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + + E+IH RWAML + + PE L
Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGC-----ITPEVLE- 115
Query: 116 GNWVQAQEWAAV---------PGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR-- 162
WV+ V G YLG P V ++ +L + + + VE R
Sbjct: 116 -KWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 174
Query: 163 SMEKDPEKKK-YPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
+ E YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 175 GLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTG 233
Query: 221 TGPLENLATHLADPWHNN 238
GPLENL HL +P NN
Sbjct: 234 KGPLENLLDHLDNPVANN 251
>gi|308809197|ref|XP_003081908.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
gi|63029305|gb|AAY27551.1| chloroplast Lhcq-like protein precursor [Ostreococcus tauri]
gi|116060375|emb|CAL55711.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
Length = 242
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 103/196 (52%), Gaps = 28/196 (14%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P +LDG+ GD GFDPL L E+LERY+E EL+H RWAML VV + VPE L
Sbjct: 48 PAHLDGTLCGDVGFDPLNLAAKSEDLERYRELELLHGRWAMLGVVGAA-----VPETLDR 102
Query: 114 -GLGNWVQAQEWAAVPGGQAT-----YLGTP---VPWGT-LPTILVIEFLSIAFVEHQRS 163
G+ N + W + YLG + G+ + I + + + E+ R
Sbjct: 103 FGVANLGEPVWWKVGAAKMNSDIALDYLGFSGFHIAGGSGIAVIAACQLVLMGGPEYARY 162
Query: 164 MEKD---------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 213
+ + P K YPGGA FDP FS D ++FE+ KV EIK+ RLA++A +G C
Sbjct: 163 VGINSLEPVGVYLPGDKDYPGGAPFDPFKFSDDAEEFEKQKVMEIKHCRLAMIAALG-CA 221
Query: 214 QQSAYPGTGPLENLAT 229
Q+ GP+ENLA+
Sbjct: 222 IQAIVTRQGPIENLAS 237
>gi|359754897|gb|AEV59638.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 212
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 94/182 (51%), Gaps = 16/182 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 37 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 95
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 166
+ G W +A GG YLG P V ++ I ++ + + VE R
Sbjct: 96 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGP 154
Query: 167 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 155 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 210
Query: 222 GP 223
GP
Sbjct: 211 GP 212
>gi|49473448|gb|AAT66413.1| chloroplast light-harvesting complex II, partial [Chlorella
pyrenoidosa]
Length = 179
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 85/170 (50%), Gaps = 10/170 (5%)
Query: 78 PENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAV-PGGQATYLG 136
P+ RY+E E+IH RWAML + +L + G V + A + G YLG
Sbjct: 7 PQTFARYREIEVIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGAQIFQDGGLNYLG 66
Query: 137 TP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPE------KKKYPGGAFDPLGFSKDPQ 188
V ++ L ++ L + E R+ P YPGGAFDPLG + DP
Sbjct: 67 NESLVHAQSILATLAVQVLLMGAAESYRANGGAPGGFGEDLDSLYPGGAFDPLGLADDPD 126
Query: 189 KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
E KVKEIKNGRLA+ + GF V Q+ G GP+ NL HL+DP NN
Sbjct: 127 TLAELKVKEIKNGRLAMFSMFGFFV-QAIVTGQGPIANLDAHLSDPTGNN 175
>gi|412991092|emb|CCO15937.1| putative lycopene beta cyclase [Bathycoccus prasinos]
Length = 1593
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 104/199 (52%), Gaps = 35/199 (17%)
Query: 50 MPGEPR--PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWI 107
+PGE PP+L G PGD GFDPL+ G +L +++E ELI+ RWAMLA + +
Sbjct: 1405 LPGENVIVPPHLTGGLPGDIGFDPLKFG-AQSDLLKFRERELINGRWAMLAAIG-----V 1458
Query: 108 LVPEAL---GLGNWVQAQEW-------AAVPGGQATYLGTPVPWGT-------LPTILVI 150
L+PE L GL Q W G Q TY+G+ +PWG LP + V
Sbjct: 1459 LLPEFLFKFGLYGEGTDQHWWSTKIIHDVADGWQLTYMGSEIPWGLFWLPIIHLPLMFVA 1518
Query: 151 EFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQKFEEYKVK---EIKNGRLALL 206
E L E +R D K YPGG FDPLG + + Q EE ++ EI++ RLA+L
Sbjct: 1519 EMLRTGKFEIERFSTLD---KLYPGGRLFDPLGLAAN-QSEEEVRILKAIEIQHCRLAML 1574
Query: 207 AFVGFCVQQSAYPGTGPLE 225
AF FC Q + G GPL+
Sbjct: 1575 AFSIFCFQGAT--GKGPLD 1591
>gi|169124051|gb|ACA47401.1| chloroplast chlorophyll-a/b binding protein [Medicago falcata]
Length = 266
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 106/230 (46%), Gaps = 34/230 (14%)
Query: 35 AAANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLER 83
A TS++ M + G R P YL G PGD+G+D L PE +
Sbjct: 33 VVAMGTSRFTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAK 92
Query: 84 YKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAV---------PGGQATY 134
+ E+IH RWAML + + PE L WV+ V G Y
Sbjct: 93 NRALEVIHGRWAMLGALGC-----ITPEVLE--KWVRVDFKEPVWFKAGSQIFSEGGLDY 145
Query: 135 LGTP--VPWGTLPTILVIEFLSIAFVEHQR--SMEKDPEKKK-YPGGA-FDPLGFSKDPQ 188
LG P V ++ +L + + + VE R + E YPGG FDPLG + DP
Sbjct: 146 LGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPV 205
Query: 189 KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
F E KVKEIKNGRLA+ + GF V Q+ G GPLENL H+ +P NN
Sbjct: 206 TFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHIDNPVANN 254
>gi|157965833|gb|ABW06953.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 424
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 92/190 (48%), Gaps = 38/190 (20%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFW 106
A W PG PP+L G PGD GFDP+ PE+ ER + SE+ H R AML V
Sbjct: 254 ATWFPGAKAPPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAG----- 308
Query: 107 ILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR---- 162
L+PE LG G W QA E A LG L FL+ A E+ R
Sbjct: 309 CLIPELLGRGVWFQAGESV-----DAAQLG-----------LYFMFLA-APSEYWRGNGG 351
Query: 163 ----SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 218
EK + YPG FDPL + D E K KEIKNGRLA++AF+G V Q+
Sbjct: 352 FGWDQKEKKAGNRIYPG--FDPLKMTSD-----ETKTKEIKNGRLAMIAFLG-LVSQANT 403
Query: 219 PGTGPLENLA 228
G P +NLA
Sbjct: 404 TGVSPFQNLA 413
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 86/185 (46%), Gaps = 25/185 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P YL G P D GFDPL L + P ER + SE+ H R AML VV S L
Sbjct: 73 WFPGATPPAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGS-----L 127
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME--- 165
+PE G G W E PG +G + +I L +E+ R
Sbjct: 128 IPELQGQGAWYTLSEKQFGPGPNGEVIG-------FTELALIGMLFSYPLEYWRGNGGFG 180
Query: 166 --KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
++ + YPG FDPL + E K EIKNGRLA+ A +GF VQ A G P
Sbjct: 181 WFEEKGDRTYPG--FDPLQLTS-----EYTKTAEIKNGRLAMSALLGFAVQH-ATTGASP 232
Query: 224 LENLA 228
LEN A
Sbjct: 233 LENWA 237
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 36/59 (61%), Gaps = 8/59 (13%)
Query: 170 KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
+ YPG FDPL + D E K KEIKNGRLA++AF+G V Q+ G P +NLA
Sbjct: 2 NRIYPG--FDPLKMTSD-----ETKTKEIKNGRLAMIAFLG-LVSQANTTGVSPFQNLA 52
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 60/153 (39%), Gaps = 40/153 (26%)
Query: 68 GFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAV 127
GFDPL+L E K +E+ + R AM A++ V A + ++ WAA
Sbjct: 192 GFDPLQL-----TSEYTKTAEIKNGRLAMSALLG-----FAVQHATTGASPLE--NWAAT 239
Query: 128 PGGQATYLG------TPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGG-AFDP 180
GG T P P L EF PG FDP
Sbjct: 240 TGGSVAMFAAAGERATWFPGAKAPPHLTGEF---------------------PGDRGFDP 278
Query: 181 LGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 213
+ F+ +P+ FE + E+ +GR+A+L G +
Sbjct: 279 VDFAANPESFERMRASEVFHGRMAMLGVAGCLI 311
>gi|357452427|ref|XP_003596490.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355485538|gb|AES66741.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 264
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 106/228 (46%), Gaps = 34/228 (14%)
Query: 37 ANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYK 85
A TS++ M + G R P YL G PGD+G+D L PE + +
Sbjct: 33 AMGTSRFTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNR 92
Query: 86 ESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAV---------PGGQATYLG 136
E+IH RWAML + + PE L WV+ V G YLG
Sbjct: 93 ALEVIHGRWAMLGALGC-----ITPEVLE--KWVRVDFKEPVWFKAGSQIFSEGGLDYLG 145
Query: 137 TP--VPWGTLPTILVIEFLSIAFVEHQR--SMEKDPEKKK-YPGGA-FDPLGFSKDPQKF 190
P V ++ +L + + + VE R + E YPGG FDPLG + DP F
Sbjct: 146 NPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPVTF 205
Query: 191 EEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
E KVKEIKNGRLA+ + GF V Q+ G GPLENL H+ +P NN
Sbjct: 206 AELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHIDNPVANN 252
>gi|6644196|gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 103/223 (46%), Gaps = 34/223 (15%)
Query: 42 KYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELI 90
K+ M +D G R P YL G PGD+G+D L PE + + E+I
Sbjct: 38 KFTMGSDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVI 97
Query: 91 HCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAV---------PGGQATYLGTP--V 139
H RWAML F + PE L WV+ V G YLG P V
Sbjct: 98 HGRWAMLGA-----FGCITPEVLE--KWVKVDFKEPVWFKAGSQIFTEGGLDYLGNPNLV 150
Query: 140 PWGTLPTILVIEFLSIAFVEHQR--SMEKDPEKKK-YPGGA-FDPLGFSKDPQKFEEYKV 195
++ +L + + + VE R + E YPGG FDPLG + DP E KV
Sbjct: 151 HAQSILAVLGFQVVLMGLVESFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTLAELKV 210
Query: 196 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
KEIKNGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 211 KEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 252
>gi|384248196|gb|EIE21681.1| chlorophyll a/b-binding protein CP29 [Coccomyxa subellipsoidea
C-169]
Length = 267
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 110/231 (47%), Gaps = 56/231 (24%)
Query: 35 AAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE--------------- 79
+A K+ A W+P RP +LDGS PGD GFDPL L + E
Sbjct: 40 SATRTYKKFDGDALWLPNTQRPAWLDGSLPGDRGFDPLELSKPSEFLQVDLDQSDINKSV 99
Query: 80 -----------------------------NLERYKESELIHCRWAMLAVVSSKFFWILVP 110
L+R++E+ELIH RWAML + +++
Sbjct: 100 NKAGGIVGKYSSSKVQATGAALSPYSEVFGLQRFRETELIHGRWAMLGALG-----VVIA 154
Query: 111 EALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 170
EA +WV A + + G Q YLG +P+ ++ ++ IE L + E R+ D ++
Sbjct: 155 EATTGVSWVDAGK-VELDGTQ--YLGFSLPF-SISQLIWIEVLLVGGAEIYRNRSTDLQE 210
Query: 171 KKYPGGAFDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ--QSAY 218
+ YPGG FDPL S D Q+ + + EIK+GRLA++AF+G +Q QS Y
Sbjct: 211 RIYPGGLFDPLKLASDDSQRTFKLREAEIKHGRLAMVAFLGAQLQSRQSLY 261
>gi|413922348|gb|AFW62280.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 224
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 92/183 (50%), Gaps = 34/183 (18%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS 101
K +W+PG P P YLDGS PGD GFDPL L E PENL Y ++EL++ RWAML V
Sbjct: 42 KAEAKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAG 101
Query: 102 SKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQ 161
+L+PE L + A +W G++ Y + T+ VIEF+ +VE +
Sbjct: 102 -----MLIPEVLTKAGLINAPQW--YDAGKSEYFASSS------TLFVIEFILFHYVEIR 148
Query: 162 R--------SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLA 204
R S+ +DP K YPG F+PL F+ E K KE+ NG L
Sbjct: 149 RWQDIKNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAPT----LEAKEKELANGELH 204
Query: 205 LLA 207
+A
Sbjct: 205 CIA 207
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 178 FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQ 215
FDPLG ++DP+ Y E+ NGR A+L G + +
Sbjct: 69 FDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPE 106
>gi|157965831|gb|ABW06952.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 786
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 92/190 (48%), Gaps = 38/190 (20%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFW 106
A W PG PP+L G PGD GFDP+ PE+ ER + SE+ H R AML V
Sbjct: 616 ATWFPGAKAPPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAG----- 670
Query: 107 ILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRS--- 163
L+PE LG G W QA E A LG L FL+ A E+ R
Sbjct: 671 CLIPELLGRGVWFQAGESV-----DAAQLG-----------LYFMFLA-APSEYWRGNGG 713
Query: 164 -----MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 218
EK + YPG FDPL + D E K KEIKNGRLA++AF+G V Q+
Sbjct: 714 FGWDQKEKKAGNRIYPG--FDPLKMTSD-----ETKTKEIKNGRLAMIAFLG-LVSQANT 765
Query: 219 PGTGPLENLA 228
G P +NLA
Sbjct: 766 TGVSPFQNLA 775
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 90/184 (48%), Gaps = 25/184 (13%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFW 106
A W PG PP+L G PGD GFDP+ PE+ ER + SE+ H R AML V
Sbjct: 254 ATWFPGAKAPPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAG----- 308
Query: 107 ILVPEALGLGNWVQAQEW--AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSM 164
L+PE LG G W QA E AA G +L P + + +
Sbjct: 309 CLIPELLGRGVWFQAGESVDAAQLGLYFMFLAAPSEY----------WRGNGGFGWDQKE 358
Query: 165 EKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224
+K + YPG FDPL + D E K KEIKNGRLA++AF+G V Q+ G P
Sbjct: 359 KKAGGNRIYPG--FDPLKMTSD-----ETKTKEIKNGRLAMIAFLG-LVSQANTTGVSPF 410
Query: 225 ENLA 228
+NLA
Sbjct: 411 QNLA 414
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 101/230 (43%), Gaps = 32/230 (13%)
Query: 11 IATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSAD-------WMPGEPRPPYLDGSA 63
+A AF ++S + + + AA S AM W PG P YL G
Sbjct: 28 LAMIAFLGLVSQANTTGVSPFQNLAAVFGASPVAMFTTTGEKRPVWFPGATPPAYLTGEF 87
Query: 64 PGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQE 123
P D GFDPL L + P ER + SE+ H R AML VV S L+PE G G W E
Sbjct: 88 PADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGS-----LIPELQGQGAWYTLSE 142
Query: 124 WAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-----KDPEKKKYPGGAF 178
PG +G + +I L +E+ R ++ + YPG F
Sbjct: 143 KQFGPGPNGEVIG-------FTELALIGMLFSYPLEYWRGNGGFGWFEEKGDRTYPG--F 193
Query: 179 DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
DPL + E K EIKNGRLA+ A +GF VQ A G PLEN A
Sbjct: 194 DPLQLTS-----EYTKTAEIKNGRLAMSALLGFAVQH-ATTGASPLENWA 237
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 101/230 (43%), Gaps = 32/230 (13%)
Query: 11 IATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSAD-------WMPGEPRPPYLDGSA 63
+A AF ++S + + + AA S AM W PG P YL G
Sbjct: 390 LAMIAFLGLVSQANTTGVSPFQNLAAVFGASPVAMFTTTGEKRPVWFPGATPPAYLTGEF 449
Query: 64 PGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQE 123
P D GFDPL L + P ER + SE+ H R AML VV S L+PE G G W E
Sbjct: 450 PADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGS-----LIPELQGQGAWYTLSE 504
Query: 124 WAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-----KDPEKKKYPGGAF 178
PG +G + +I L +E+ R ++ + YPG F
Sbjct: 505 KQFGPGPNGEVIG-------FTELALIGMLFSYPLEYWRGNGGFGWFEEKGDRTYPG--F 555
Query: 179 DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
DPL + E K EIKNGRLA+ A +GF VQ A G PLEN A
Sbjct: 556 DPLQLTS-----EYTKTAEIKNGRLAMSALLGFAVQH-ATTGASPLENWA 599
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 36/59 (61%), Gaps = 8/59 (13%)
Query: 170 KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
+ YPG FDPL + D E K KEIKNGRLA++AF+G V Q+ G P +NLA
Sbjct: 2 NRIYPG--FDPLKMTSD-----ETKTKEIKNGRLAMIAFLG-LVSQANTTGVSPFQNLA 52
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 60/153 (39%), Gaps = 40/153 (26%)
Query: 68 GFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAV 127
GFDPL+L E K +E+ + R AM A++ V A + ++ WAA
Sbjct: 554 GFDPLQL-----TSEYTKTAEIKNGRLAMSALLG-----FAVQHATTGASPLE--NWAAT 601
Query: 128 PGGQATYLG------TPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGG-AFDP 180
GG T P P L EF PG FDP
Sbjct: 602 TGGSVAMFAAAGERATWFPGAKAPPHLTGEF---------------------PGDRGFDP 640
Query: 181 LGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 213
+ F+ +P+ FE + E+ +GR+A+L G +
Sbjct: 641 VDFAANPESFERMRASEVFHGRMAMLGVAGCLI 673
>gi|118489712|gb|ABK96657.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 224
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 97/198 (48%), Gaps = 23/198 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + + E+IH RWAML + + PE L
Sbjct: 23 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGC-----ITPEVLE- 76
Query: 116 GNWVQAQEWAAV---------PGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR-- 162
WV+ V G YLG P V ++ +L + + + VE R
Sbjct: 77 -KWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 135
Query: 163 SMEKDPEKKK-YPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
+ E YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 136 GLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTG 194
Query: 221 TGPLENLATHLADPWHNN 238
GPLENL HL +P NN
Sbjct: 195 KGPLENLLDHLDNPVANN 212
>gi|255076759|ref|XP_002502049.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
gi|226517314|gb|ACO63307.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
Length = 393
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 100/200 (50%), Gaps = 30/200 (15%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGE-VPENLERYKESELIHCRWAMLAVVSSKFFWILVP 110
G P P +LDG+ GD GFDPL L P +L+RY+E EL+H RWAML VV + VP
Sbjct: 189 GYPFPEHLDGTLCGDAGFDPLGLASGSPGDLDRYRELELLHGRWAMLGVVGAA-----VP 243
Query: 111 EALGLGNWVQAQE--WAAV-------PGGQATYLGTP----VPWGTLPTILVIEFLSIAF 157
EAL ++ E W V P YLG L I + + +
Sbjct: 244 EALARFGGLELGEPVWWKVGAAKLNSPDLALDYLGLGGFHIAGSSGLAVIAACQLVLMGG 303
Query: 158 VEHQRSMEKD---------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLA 207
E+ R + D P + YPGGA FDP G S D FE KV E+K+GRLA++A
Sbjct: 304 PEYARKVGIDSLVPVGVYLPGDRDYPGGAPFDPFGVSADAAVFERQKVAEMKHGRLAMVA 363
Query: 208 FVGFCVQQSAYPGTGPLENL 227
+G C Q+ G GP+ENL
Sbjct: 364 MLG-CFAQAWATGVGPVENL 382
>gi|145354756|ref|XP_001421643.1| possibly CP29, chlorophyll a/b binding [Ostreococcus lucimarinus
CCE9901]
gi|144581881|gb|ABO99936.1| possibly CP29, chlorophyll a/b binding [Ostreococcus lucimarinus
CCE9901]
Length = 260
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 105/221 (47%), Gaps = 54/221 (24%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG RP +LDGS PGD GFDP L + E
Sbjct: 48 WRPGAVRPAWLDGSLPGDRGFDPFNLSKPIEYVQFDLDALDGSAATNPAGRVIGKLKKTD 107
Query: 80 ---------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEW 124
++ R++E EL+H RWAML +V + EA +W A +
Sbjct: 108 NKPKARAIVPYDESFDIMRFRECELLHSRWAMLGLVGAT-----AAEAATGISWADAGK- 161
Query: 125 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 184
V Q YLG P+P ++ ++ IE L++ ++E RS E D K+ YPGGAFDPLG+
Sbjct: 162 --VELEQPQYLGFPLPGLSVASLTAIEVLAMGYLEVARSAELDQNKRMYPGGAFDPLGYV 219
Query: 185 KDPQKFEEYKVK--EIKNGRLALLAFVGFCVQQSAYPGTGP 223
+ EE+++K E+K+GRLA++ + ++ +A G P
Sbjct: 220 ANADAEEEFRLKTAELKHGRLAMVGMLIISIEAAAGHGVLP 260
>gi|255539358|ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223551445|gb|EEF52931.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 329
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 105/209 (50%), Gaps = 27/209 (12%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+GFD L + +RY E++H RWAMLA + + PE L L
Sbjct: 124 PAYLTGELPGDYGFDVAGLSKDSVAFQRYFNFEILHARWAMLAALGAL-----APEVLDL 178
Query: 116 GNWVQAQE-------WAAVPGGQATYLGTP-VPWGTLPTILVIEFLSIAFV---EHQRSM 164
E ++ + G YLG P + + +LVI + E+ R
Sbjct: 179 SGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGSQGVLVIAICQALLMVGPEYARYC 238
Query: 165 EKD---------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
+ P YPGG FDPL S D EE KVKEIKNGRLA++A++GF
Sbjct: 239 GIEALEPLGIYLPGDINYPGGPLFDPLNLSSDAVALEELKVKEIKNGRLAMVAWLGF-YA 297
Query: 215 QSAYPGTGPLENLATHLADPWHNNIGDVI 243
Q+A G GP++NL H++DP+HNN+ V+
Sbjct: 298 QAALTGKGPVQNLVEHISDPFHNNLLCVL 326
>gi|156890566|gb|ABU96693.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 104/235 (44%), Gaps = 46/235 (19%)
Query: 36 AANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERY 84
AA A + MS D G R P YL G PGD+G+D L PE R
Sbjct: 35 AAAANGRITMSNDLWYGPDRLKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARN 94
Query: 85 KESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVP---------------G 129
+ E+IH RWAML + + PE L Q+W V
Sbjct: 95 RALEVIHGRWAMLGALGC-----ITPEVL--------QKWVRVSFKEPVWFKAGAQIFSE 141
Query: 130 GQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR--SMEKDPEKKK-YPGGA-FDPLGF 183
G YLG P V ++ +L + + + VE R + E YPGG FDPLG
Sbjct: 142 GGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGL 201
Query: 184 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
+ DP F E KVKEIKNGRLA+ + F V Q+ G G LENL H+ +P NN
Sbjct: 202 ADDPVTFAELKVKEIKNGRLAMFSMFRFFV-QAIVTGKGSLENLLDHIDNPVANN 255
>gi|145079136|tpg|DAA05900.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Acetabularia acetabulum]
Length = 192
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 107/205 (52%), Gaps = 31/205 (15%)
Query: 38 NATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAML 97
NA+S M W+ G P +LDGS GDFGFDPL LG P+ L+ Y E+E + RWAM+
Sbjct: 4 NASSDRQM---WLVGAAAPEHLDGSLAGDFGFDPLGLGSEPDRLKWYVEAEKTNGRWAMM 60
Query: 98 AVVSSKFFWILVPEALGLG-NWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIA 156
AV IL E LG+ W +A G Y G P P +L +E + +
Sbjct: 61 AVAG-----ILGQELLGVTPKWFEA--------GAKDY-GIPF----FP-LLAMEAIILG 101
Query: 157 FVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFE--EYKVKEIKNGRLALLAFVGFCVQ 214
F+E +R + K G + F DP + ++KEIKNGRLA++AFVGF V
Sbjct: 102 FLETKRY-----QGFKTTGSSGFLNSFPFDPANMNSPDMQLKEIKNGRLAMIAFVGFSV- 155
Query: 215 QSAYPGTGPLENLATHLADPWHNNI 239
Q+ GP+E L H+ DP+ +NI
Sbjct: 156 QALVTREGPIEGLFNHIGDPFGHNI 180
>gi|145079288|tpg|DAA05908.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm10 [Acetabularia acetabulum]
Length = 224
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 84/168 (50%), Gaps = 11/168 (6%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE---A 112
P YL G PGD+G+D L PE RY+E ELIH RWAML + IL +
Sbjct: 54 PSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILAKYGGVS 113
Query: 113 LGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 170
G W +A GG YLG V + IL + L + +E R + P
Sbjct: 114 FGESVWFKAGSQIFQEGG-LDYLGNSSLVHAQYILAILGCQVLLMGAIEAYR-VNGGPLG 171
Query: 171 KK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
+ YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF VQ
Sbjct: 172 EGLDPLYPGGQFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYVQ 219
>gi|149242543|pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 94/179 (52%), Gaps = 35/179 (19%)
Query: 78 PENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGT 137
PENL + ++EL++ RWAML V +L+PE + +W A G+ Y +
Sbjct: 1 PENLRWFVQAELVNGRWAMLGVAG-----MLLPEVFTSIGIINVPKWYA--AGKEEYFAS 53
Query: 138 PVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKKY---------PGGAFDP 180
T+ VIEF+ +VE +R S+ +DP K+Y PGG F+P
Sbjct: 54 S------STLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNP 107
Query: 181 LGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
L F+ E K KEI NGRLA+LAF+GF +Q + G GP +NL H++DPWHN I
Sbjct: 108 LNFAPTL----EAKEKEIANGRLAMLAFLGFIIQHNV-TGKGPFDNLLQHISDPWHNTI 161
>gi|145356594|ref|XP_001422513.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
gi|144582756|gb|ABP00830.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
Length = 324
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 104/204 (50%), Gaps = 33/204 (16%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YLDG+ GD+GFDPL LG +++Y+ +E+IH RWAMLA+ +++PEALGL
Sbjct: 122 PSYLDGTLAGDYGFDPLGLG-ADGAIKQYRVAEVIHARWAMLAIPG-----VVIPEALGL 175
Query: 116 --GNWVQ-AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPE--- 169
G W + + + G+ +L P+ + + L +A VE RS + P
Sbjct: 176 PGGVWTETGKVFLDGETGRPFFLENPIVFAAVQVAL------MAGVEQFRSSGEGPAGFV 229
Query: 170 --KKKY------------PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQ 215
K K+ PGG D + +PQ KVKEIKNGRLA++A +G V Q
Sbjct: 230 PFKGKFDESAFKGLDPINPGGPLDFFNVASNPQDLALLKVKEIKNGRLAMIAMLGVFV-Q 288
Query: 216 SAYPGTGPLENLATHLADPWHNNI 239
G GP N H+ADP+ N
Sbjct: 289 GLTTGEGPAANWGKHVADPFGYNF 312
>gi|238858956|dbj|BAH70299.1| chlorophyll a/b binding protein [Vicia cinerea]
Length = 266
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 102/199 (51%), Gaps = 20/199 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLER---YKESELIHCRWAMLAVVSSKFFWIL 108
GEP P YL G PGD+G+D L PE + + S W V S F +
Sbjct: 64 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNVSLRSSTPDGPCWVPWDVSSQSFCPVT 122
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVI---EFLSIAFVEHQRSME 165
V ++ L + + + G YLG P G+ +IL I + + + VE R
Sbjct: 123 VLNSVKLCGFKAGSQIFSE--GGLDYLGNPS-LGSRQSILAIWATQVILMGAVEGYRIAG 179
Query: 166 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 219
DP YPGG+FDPLG ++DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 180 GPLGEVVDP---LYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVT 235
Query: 220 GTGPLENLATHLADPWHNN 238
G GPLENLA HL+DP +NN
Sbjct: 236 GKGPLENLADHLSDPVNNN 254
>gi|308812794|ref|XP_003083704.1| CP29-like light-harvesting chlorophyll a/b binding protein chlor
(IC) [Ostreococcus tauri]
gi|63029289|gb|AAY27543.1| chloroplast chlorophyll a/b-binding protein CP29 precursor Lhcb4
[Ostreococcus tauri]
gi|116055585|emb|CAL58253.1| CP29-like light-harvesting chlorophyll a/b binding protein chlor
(IC) [Ostreococcus tauri]
Length = 257
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 103/221 (46%), Gaps = 55/221 (24%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W PG RP +LDGS PGD GFDP LG+ E L+
Sbjct: 43 WRPGAVRPAWLDGSLPGDRGFDPFGLGKPAEYLQFDLDALDGSAARNPSGNVIGKLKKAD 102
Query: 83 ------------------RYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEW 124
R++E EL+H RWAML +V + A G+ W A +
Sbjct: 103 SKPKARTIVPYDEAFDIMRFRECELLHSRWAMLGLVGAA----AAEAATGI-TWADAGK- 156
Query: 125 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 184
+ Q YLG P+ T+ + +IE L++ ++E RS E D K+ YPGGAFDPLG+
Sbjct: 157 --IELEQPQYLGFPIQL-TVTQLTIIEVLAMGYLEIARSAELDQNKRMYPGGAFDPLGYV 213
Query: 185 KDPQKFEEYKVK--EIKNGRLALLAFVGFCVQQSAYPGTGP 223
EE+++K E+K+GRLA+ + ++ + GT P
Sbjct: 214 AKADAQEEFRLKTAELKHGRLAMAGMLIISIEAATGRGTLP 254
>gi|40714511|dbj|BAD06919.1| light-harvesting chlorophyll-a/b protein of photosystem I (Type
III) [Chlamydomonas reinhardtii]
Length = 267
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 117/264 (44%), Gaps = 57/264 (21%)
Query: 22 SSKSKFFTAVSLPAAAN-----------ATSKYAMSADWM---PGEPRPPYLDGSAPGDF 67
S+++ F V+ PA AN + +K S D + + YLDGS PGDF
Sbjct: 6 SAQAAFSGKVARPAKANRARLVCRAEEKSIAKVDRSKDQLYVGASQSSLAYLDGSLPGDF 65
Query: 68 GFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQA 121
GFDPL L + P N + E SE+IH RWAML + PE LG +
Sbjct: 66 GFDPLGLLD-PVNSGGFIEPKWLQYSEVIHARWAMLGAAGC-----IAPEVLGAAGLIPD 119
Query: 122 Q------EWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME---------- 165
E +P +Y G W TI +E +++ F E +R +
Sbjct: 120 ATNIKWFESGVIPPA-GSYNGY---WADPYTIFFVEIVAMQFAELRRLQDFRYPGSMGQQ 175
Query: 166 ---------KDPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQ 215
K YPGG F+ K +E K+KEIKNGRLA+LA +G+ Q
Sbjct: 176 YFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAMLGYGA-Q 234
Query: 216 SAYPGTGPLENLATHLADPWHNNI 239
+ G GP +NL HLADP +NNI
Sbjct: 235 AVMTGKGPFQNLVEHLADPVNNNI 258
>gi|168007695|ref|XP_001756543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692139|gb|EDQ78497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 93/184 (50%), Gaps = 20/184 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G D +L +P N R + EL++ RWAML + L PE +
Sbjct: 44 PEYLKGEYPGDYGCDIFKLARLPANYARLRTQELMNGRWAMLGITGC-----LTPELINS 98
Query: 116 GN-------WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 166
+ W G YLG P + +L ++V++ L + E+ R ++
Sbjct: 99 NSTPGFEPVWFNTGAQIFSDAG-IDYLGVPGFINAHSLFAVIVVQALLMGLAEYAR-IKF 156
Query: 167 DPEKKK--YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
PE YPGG FDPLGFS DP+ E KVKEIKNGRLA++A G Q A G P
Sbjct: 157 VPEGADPFYPGGKTFDPLGFSSDPEILAELKVKEIKNGRLAMMAMAGL-FAQGAVTGVSP 215
Query: 224 LENL 227
L+NL
Sbjct: 216 LQNL 219
>gi|32307468|gb|AAP79139.1| chlorophyll a/b-binding protein CP29 [Bigelowiella natans]
Length = 291
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 108/226 (47%), Gaps = 56/226 (24%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPL-----------------------RLGEV-------- 77
W+P RP +LDGS PGD GFDPL R G V
Sbjct: 73 WLPNTERPGWLDGSLPGDRGFDPLGLSKPAEYLQFDVDQLDQNAAVNRAGRVIGQYDGGI 132
Query: 78 ----PEN----------LERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQE 123
EN L R++E ELIH RWAMLA + + I+ + G+ W QA
Sbjct: 133 DEVNTENSLSPYSDIFGLRRFRECELIHGRWAMLATLGA----IVAELSTGV-PWDQA-- 185
Query: 124 WAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGF 183
V A YL +P+ T+ + ++E L + E R+ E D +K+ YPGG FDPLGF
Sbjct: 186 -GKVELDGARYLNFDLPF-TVSQLTLLEVLLVGGAEIYRNTETDLDKRLYPGGTFDPLGF 243
Query: 184 -SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
+K ++ + EIK+GRLA++A G C Q+ G G +ENL+
Sbjct: 244 TTKSDEQTMRLREAEIKHGRLAMVAAFG-CGVQAFTTGEGLIENLS 288
>gi|145079082|tpg|DAA05897.1| TPA_inf: chloroplast light-harvesting protein CP29 precursor Lhcb4
[Acetabularia acetabulum]
Length = 275
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 109/233 (46%), Gaps = 56/233 (24%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE---------------------- 79
K+ A W+P RP +LDGS PGD GFDPL L + E
Sbjct: 46 KFVGDALWLPNTTRPVWLDGSLPGDRGFDPLGLAKPTEYLQVELDEQNINMGVNKAGGII 105
Query: 80 -----------------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLG 116
LER++E ELIH RWAMLA + I+ A G+
Sbjct: 106 GSYQESAELVSSEKRLQPYKEVFGLERFRECELIHGRWAMLACLGC----IVAEGATGV- 160
Query: 117 NWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGG 176
+WV+A V A Y +P+ ++ ++ IE + + E R+ E D K+ YPGG
Sbjct: 161 SWVEA---GKVELDGAQYFNFNLPF-SITQLVWIEAILVGGAEIYRNTELDSVKRCYPGG 216
Query: 177 AFDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
FDPL S D ++ + K EIK+ RLA++AF+G+ + Q+ G G L +LA
Sbjct: 217 IFDPLKLASDDSERSFKLKEAEIKHARLAMIAFLGYSI-QAGVTGQGALGSLA 268
>gi|145079190|tpg|DAA05903.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm11 [Acetabularia acetabulum]
Length = 224
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 85/173 (49%), Gaps = 21/173 (12%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D L PE RY+E ELIH RWAML + + PE L
Sbjct: 54 PSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALG-----CVTPEILSK 108
Query: 114 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
G W +A GG YLG V ++ IL + L + +E R +
Sbjct: 109 YGGVSFGESVWFKAGSQIFQEGG-LDYLGNSNLVHAQSILAILGCQVLLMGAIEAYR-VN 166
Query: 166 KDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
P + YPG FDPLG + DP F E K+KEIKNGRLA+ + GF VQ
Sbjct: 167 GGPLGEGLDPLYPGDKFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQ 219
>gi|159486759|ref|XP_001701405.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
gi|158271707|gb|EDO97521.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
Length = 298
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 118/263 (44%), Gaps = 55/263 (20%)
Query: 22 SSKSKFFTAVSLPAAAN-----------ATSKYAMSADWM---PGEPRPPYLDGSAPGDF 67
S+++ F V+ PA AN + +K S D + + YLDGS PGDF
Sbjct: 6 SAQAAFSGKVARPAKANRARLVCRAEEKSIAKVDRSKDQLYVGASQSSLAYLDGSLPGDF 65
Query: 68 GFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSSKFFWILVPEALGLGNWV-- 119
GFDPL L + P N + E SE+IH RWAML + PE LG +
Sbjct: 66 GFDPLGLLD-PVNSGGFIEPKWLQYSEVIHARWAMLGAAGC-----IAPEVLGAAGLIPD 119
Query: 120 -QAQEW--AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME----------- 165
+W + V +Y G W TI +E +++ F E +R +
Sbjct: 120 ATNIKWFESGVIPPAGSYNGY---WADPYTIFFVEIVAMQFAELRRLQDFRYPGSMGQQY 176
Query: 166 --------KDPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQS 216
K YPGG F + K +E K+KEIKNGRLA+LA +G+ Q+
Sbjct: 177 FLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAMLGYGA-QA 235
Query: 217 AYPGTGPLENLATHLADPWHNNI 239
G GP +NL HLADP +NNI
Sbjct: 236 VMTGKGPFQNLVEHLADPVNNNI 258
>gi|145078859|tpg|DAA05887.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Euglena gracilis]
Length = 1036
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 91/196 (46%), Gaps = 28/196 (14%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W P P +L+G GD GFDP L P+ ER + +E+ H R AMLAVV + L
Sbjct: 352 WFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGA-----L 406
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDP 168
VP+ LG G W +A + A + L + + F + E
Sbjct: 407 VPDYLGKGIWYEAAQNAGI---------------GLKEVAIFTAAYGVFEVARGVKENSD 451
Query: 169 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
YPG FDPL + D K EIKNGRLAL A +GF VQ+ G+ PL NLA
Sbjct: 452 PTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGS-PLANLA 503
Query: 229 THLADPWHNNIGDVII 244
HL P NI D I+
Sbjct: 504 EHLQQPLQRNIADSIM 519
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 97/222 (43%), Gaps = 45/222 (20%)
Query: 34 PAAANATSKYAMSAD---------WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERY 84
P AN T+ AM A W P P YL G A GD GFDP L P ER
Sbjct: 697 PIGANITTNLAMFASSGAKEERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERM 756
Query: 85 KESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTL 144
+ +E+ HCR +MLA+V LVPE LG G W Q W V
Sbjct: 757 QVAEVFHCRLSMLALVG-----CLVPELLGNGAWFQI--WDKV---------------DF 794
Query: 145 PTILVIEFLSIAFVEHQRS------MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEI 198
V+ +A +E+ R +++ + YPG FDPL + E K EI
Sbjct: 795 NRFAVVALQVVAPLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTT-----EYTKEAEI 847
Query: 199 KNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 240
KNGRLA++ G V QS G P+ NL HL+ P NIG
Sbjct: 848 KNGRLAMIGMFGLEV-QSHVTGKSPITNLIDHLSHPLTANIG 888
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 91/197 (46%), Gaps = 36/197 (18%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W P P +L G PGD GFDPL L P ER + SE+ H R AML +V +
Sbjct: 160 WFPNATPPDHLTGEFPGDRGFDPLGLSTDPVVFERMRISEVFHGRLAMLGIVG-----CI 214
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME--- 165
VPE + W + G T LG ++ IA +E+ R
Sbjct: 215 VPEL-----FFSQGPWFDLSGFNLTRLG------------LVALQVIAPLEYWRGNRGFS 257
Query: 166 ---KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
D + YPG FDPL + D E K+KEIKNGRLA+ A +G V QS G
Sbjct: 258 WNGDDGPDQSYPG--FDPLRLTDD-----ETKLKEIKNGRLAMTAMLGLEV-QSHITGKS 309
Query: 223 PLENLATHLADPWHNNI 239
PL NL+ HL++P NI
Sbjct: 310 PLVNLSEHLSNPASVNI 326
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 91/199 (45%), Gaps = 41/199 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W P P +L G P D GFDPL L P+ R + +E+ H R AML +V +
Sbjct: 537 WFPNAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVG-----CI 591
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAF---VEHQRSM- 164
VPE LG G W +A + +V G L + F+++A E+ R
Sbjct: 592 VPELLGKGAWFEAGD--SVDG------------------LKLGFITMAIAAPTEYWRGQG 631
Query: 165 ----EKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
+K + YPG FDPL + D + E+KNGRLAL A G Q A G
Sbjct: 632 GFNWQKGELDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLA-TG 683
Query: 221 TGPLENLATHLADPWHNNI 239
PL NL+ HLA+P NI
Sbjct: 684 ESPLANLSAHLANPIGANI 702
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 66/152 (43%), Gaps = 35/152 (23%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W P P +L G P D GFDPL L P+ R + +E+ H R AML +V +
Sbjct: 911 WFPNAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVG-----CI 965
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAF---VEHQRSM- 164
VPE LG G W +A + +V G L + F+++A E+ R
Sbjct: 966 VPELLGKGAWFEAGD--SVDG------------------LKLGFITMAIAAPTEYWRGQG 1005
Query: 165 ----EKDPEKKKYPGGAFDPLGFSKDPQKFEE 192
+K + YPG FDPL + D + E
Sbjct: 1006 GFNWQKGELDRSYPG--FDPLNLTTDYTRAAE 1035
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 172 KYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 213
+YP FDPL + DP + +V E+ +GRLA+L VG V
Sbjct: 924 EYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIV 966
>gi|116783114|gb|ABK22798.1| unknown [Picea sitchensis]
Length = 253
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 94/196 (47%), Gaps = 28/196 (14%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
E P YL G PGD+G+D L PE +AML + F +L
Sbjct: 64 EQTPSYLTGEFPGDYGWDTAGLSADPET-------------FAMLGALGCVFPELLAKTG 110
Query: 113 LGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 162
+ G W +A GG YLG P + ++ I + + + +E R
Sbjct: 111 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPL 169
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 170 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 225
Query: 223 PLENLATHLADPWHNN 238
P+ENL HLADP NN
Sbjct: 226 PIENLFDHLADPTANN 241
>gi|255087238|ref|XP_002505542.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
gi|226520812|gb|ACO66800.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
Length = 308
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 98/201 (48%), Gaps = 28/201 (13%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YLDGS GD+GFDPL+LG+ +E+Y+ +E+IH RWAMLA+ I++PEALG+
Sbjct: 105 PSYLDGSLAGDYGFDPLQLGK-DGKVEQYRAAEVIHARWAMLAIPG-----IVIPEALGI 158
Query: 116 GNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKD------PE 169
V + G+A G P I+ A VE R+ + P
Sbjct: 159 PGGVWTETGKVFLDGEA---GRPEILQNPYLFAAIQIGLFAAVEGYRAGKAPAPDGFVPF 215
Query: 170 KKKY------------PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSA 217
K K+ PGG D + P KVKEIKNGRLA++A +G V Q
Sbjct: 216 KGKFSGSDFSGLDPINPGGPLDFFNVAATPDDLAVLKVKEIKNGRLAMIAMLGVFV-QGL 274
Query: 218 YPGTGPLENLATHLADPWHNN 238
G GP N H+ADP+ N
Sbjct: 275 TTGEGPAANWGKHVADPFGYN 295
>gi|157965819|gb|ABW06946.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 823
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 95/209 (45%), Gaps = 31/209 (14%)
Query: 39 ATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWA 95
A+ + S D W P P +L G GD GFDP L PE ER + +E+ H R A
Sbjct: 81 ASGRKTQSEDRPLWFPNTLAPSWLTGEYFGDRGFDPAGLAADPETFERMRIAEVYHGRLA 140
Query: 96 MLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSI 155
MLAVV + LVP+ LG G W +A + A + G + +
Sbjct: 141 MLAVVGA-----LVPDYLGKGIWYEAAQNAGI--------------GVKEVAIFTAAYGV 181
Query: 156 AFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQ 215
V DP YPG FDPL + D K EIKNGRLAL A +GF VQ+
Sbjct: 182 FEVARGVKENSDP-TTVYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQR 233
Query: 216 SAYPGTGPLENLATHLADPWHNNIGDVII 244
G+ PL NLA HL P NI D I+
Sbjct: 234 HVVGGS-PLANLADHLQQPLQRNIADSIM 261
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 97/222 (43%), Gaps = 45/222 (20%)
Query: 34 PAAANATSKYAMSAD---------WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERY 84
P AN T+ AM A W P P YL G A GD GFDP L P ER
Sbjct: 439 PIGANITTNLAMFASSGVKEERELWFPNIVPPRYLTGEAFGDKGFDPAGLAADPVTFERM 498
Query: 85 KESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTL 144
+ +E+ HCR +MLA+V LVPE LG G W Q W V
Sbjct: 499 QVAEVFHCRLSMLALVG-----CLVPELLGNGAWFQI--WDKV---------------DF 536
Query: 145 PTILVIEFLSIAFVEHQRS------MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEI 198
V+ +A +E+ R +++ + YPG FDPL + E K EI
Sbjct: 537 NRFAVVALQVVAPLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTT-----EYTKEAEI 589
Query: 199 KNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 240
KNGRLA++ G V QS G P+ NL HL+ P NIG
Sbjct: 590 KNGRLAMIGMFGLEV-QSHVTGKSPITNLIDHLSSPLTANIG 630
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 93/204 (45%), Gaps = 41/204 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W P P +L G P D GFDPL L P+ R + +E+ H R AML +V +
Sbjct: 653 WFPDAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVG-----CI 707
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAF---VEHQRSM- 164
VPE LG G W +A + +V G L + F+++A E+ R
Sbjct: 708 VPELLGKGAWFEAGD--SVDG------------------LKLGFIAMAIAAPTEYWRGHG 747
Query: 165 ----EKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
+K + YPG FDPL + D K E+KNGRLAL A G Q A G
Sbjct: 748 GFNWQKGDLDRSYPG--FDPLNLTTD-----YTKAAEVKNGRLALTAVAGLTAQYLA-TG 799
Query: 221 TGPLENLATHLADPWHNNIGDVII 244
PL NLA HLA+P NI ++
Sbjct: 800 ESPLANLAAHLANPVGANIATNLV 823
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 91/199 (45%), Gaps = 41/199 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W P P +L G P D GFDPL L P+ R + +E+ H R AML +V +
Sbjct: 279 WFPDAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVG-----CI 333
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAF---VEHQRSM- 164
VPE LG G W +A + +V G L + F+++A E+ R
Sbjct: 334 VPELLGKGAWFEAGD--SVDG------------------LKLGFIAMAIAAPTEYWRGHG 373
Query: 165 ----EKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
+K + YPG FDPL + D K E+KNGRLAL A G Q A G
Sbjct: 374 GFNWQKGDLDRSYPG--FDPLNLTTD-----YTKAAEVKNGRLALTAVAGLTAQYLA-TG 425
Query: 221 TGPLENLATHLADPWHNNI 239
PL NL+ HLA+P NI
Sbjct: 426 ESPLANLSAHLANPIGANI 444
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 166 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
D + YPG FDPL + EE K+KEIKNGRLA+ A +G V QS G PL
Sbjct: 4 DDGPDQSYPG--FDPLRLTD-----EETKLKEIKNGRLAMTAMLGLEV-QSHLTGKSPLV 55
Query: 226 NLATHLADPWHNNI 239
NL+ HL++P NI
Sbjct: 56 NLSEHLSNPASVNI 69
>gi|145078891|tpg|DAA05888.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Euglena gracilis]
Length = 1081
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 91/196 (46%), Gaps = 28/196 (14%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W P P +L G GD GFDP L P+ ER + +E+ H R AMLA+V + L
Sbjct: 352 WFPNTLAPSWLTGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAIVGA-----L 406
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDP 168
VP+ LG G W +A + A + L + + F + E
Sbjct: 407 VPDYLGKGIWYEAAQNAGI---------------GLKEVAIFTAAYGVFEVARGVKENSD 451
Query: 169 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
YPG FDPL + D K EIKNGRLAL A +GF VQ+ G+ PL NLA
Sbjct: 452 PTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGS-PLANLA 503
Query: 229 THLADPWHNNIGDVII 244
HL P +NI D I+
Sbjct: 504 DHLQQPLQHNIADSIM 519
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 96/222 (43%), Gaps = 45/222 (20%)
Query: 34 PAAANATSKYAMSAD---------WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERY 84
P AN + AM A W P P YL G A GD GFDP L P ER
Sbjct: 697 PIGANIATNLAMFASSGAKEERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERM 756
Query: 85 KESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTL 144
+ +E+ HCR +MLA+V LVPE LG G W Q W V
Sbjct: 757 QVAEVFHCRLSMLALVG-----CLVPELLGNGAWFQI--WDKV---------------DF 794
Query: 145 PTILVIEFLSIAFVEHQRS------MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEI 198
V+ +A +E+ R +++ + YPG FDPL + E K EI
Sbjct: 795 NRFAVVALQVVAPLEYWRGNGGFLWNDEETIDQSYPG--FDPLNLTT-----EYTKEAEI 847
Query: 199 KNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 240
KNGRLA++ G V QS G P+ NL HL+ P NIG
Sbjct: 848 KNGRLAMIGMFGLEV-QSHVTGKSPITNLIDHLSHPLTANIG 888
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 91/199 (45%), Gaps = 41/199 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W P P +L G P D GFDPL L P+ R + +E+ H R AML +V +
Sbjct: 537 WFPNAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVG-----CI 591
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAF---VEHQRSM- 164
VPE LG G W +A + +V G L + F+++A E+ R
Sbjct: 592 VPELLGKGAWFEAGD--SVDG------------------LKLGFITMAIAAPTEYWRGQG 631
Query: 165 ----EKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
+K + YPG FDPL + D + E+KNGRLAL A G Q A G
Sbjct: 632 GFNWQKGDLDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLA-TG 683
Query: 221 TGPLENLATHLADPWHNNI 239
PL NL+ HLA+P NI
Sbjct: 684 ESPLANLSAHLANPIGANI 702
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 90/199 (45%), Gaps = 41/199 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W P P +L G P D GFDPL L P+ R + +E+ H R AML +V +
Sbjct: 911 WFPNAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVG-----CI 965
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAF---VEHQRSM- 164
VPE LG G W +A + +V G L + F+++A E+ R
Sbjct: 966 VPELLGKGAWFEAGD--SVDG------------------LKLGFITMAIAAPTEYWRGQG 1005
Query: 165 ----EKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
+K + YPG FDPL + D + E+KNGRLAL A G Q A G
Sbjct: 1006 GFNWQKGDLDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLA-TG 1057
Query: 221 TGPLENLATHLADPWHNNI 239
PL NL HLA+P NI
Sbjct: 1058 ESPLANLTAHLANPLGANI 1076
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 91/197 (46%), Gaps = 36/197 (18%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W P P +L G PGD GFDPL L + P ER + SE+ H R AML +V +
Sbjct: 160 WFPNATPPDHLTGEFPGDRGFDPLGLSKDPVVFERMRISEVFHGRLAMLGIVG-----CI 214
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME--- 165
VPE + W + T LG ++ IA +E+ R
Sbjct: 215 VPEL-----FFSQGPWFDLSSFNLTRLG------------LVALQVIAPLEYWRGNRGFS 257
Query: 166 ---KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
D + YPG FDPL + EE K+KEIKNGRLA+ A +G V QS G
Sbjct: 258 WNGDDGPDQSYPG--FDPLRLTD-----EETKLKEIKNGRLAMTAMLGLEV-QSHITGKS 309
Query: 223 PLENLATHLADPWHNNI 239
PL NL+ HL++P NI
Sbjct: 310 PLVNLSEHLSNPASVNI 326
>gi|302849997|ref|XP_002956527.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
gi|300258225|gb|EFJ42464.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
Length = 238
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 87/175 (49%), Gaps = 14/175 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE +RY+E ELIH RWAML + +L +
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPKLLSKNGVQF 114
Query: 116 GN--WVQAQEWAAVPGGQATYLG--TPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 171
W +A GG YLG + V + L + + + VE R + P +
Sbjct: 115 SEALWFKAGAQIFQEGG-LDYLGNLSLVHAQNIVATLACQVILMGLVEGYR-VNGGPAGE 172
Query: 172 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF VQ PG G
Sbjct: 173 GLDPLYPGKSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQ----PGKG 223
>gi|126251|sp|P08976.1|LH18_EUGGR RecName: Full=Light-harvesting complex I LH38 proteins; Contains:
RecName: Full=LH38 protein 1; Contains: RecName:
Full=LH38 protein 2; Contains: RecName: Full=LH38
protein 3; Flags: Precursor
gi|755729|emb|CAA31338.1| unnamed protein product [Euglena gracilis]
Length = 530
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 91/196 (46%), Gaps = 28/196 (14%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W P P +L+G GD GFDP L P+ ER + +E+ H R AMLAVV + L
Sbjct: 5 WFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGA-----L 59
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDP 168
VP+ LG G W +A + A + L + + F + E
Sbjct: 60 VPDYLGKGIWYEAAQNAGI---------------GLKEVAIFTAAYGVFEVARGVKENSD 104
Query: 169 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
YPG FDPL + D K EIKNGRLAL A +GF VQ+ G+ PL NLA
Sbjct: 105 PTTIYPG--FDPLNLTTDYT-----KEAEIKNGRLALTALLGFEVQRHVVGGS-PLANLA 156
Query: 229 THLADPWHNNIGDVII 244
HL P NI D I+
Sbjct: 157 EHLQQPLQRNIADSIM 172
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 89/199 (44%), Gaps = 41/199 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W P P L G P D GFDPL L P+ R + +E+ H R AML V +
Sbjct: 190 WFPNAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGC-----I 244
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAF---VEHQRSM- 164
VPE LG G W +A + +V G L + F+++A E+ R
Sbjct: 245 VPELLGKGAWFEAGD--SVDG------------------LKLGFITMAIAAPTEYWRGQG 284
Query: 165 ----EKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 220
+K + YPG FDPL + D + E+KNGRLAL A G Q A G
Sbjct: 285 GFNWQKGELDRSYPG--FDPLNLTTDYT-----RAAEVKNGRLALTAVAGLTAQYLA-TG 336
Query: 221 TGPLENLATHLADPWHNNI 239
PL NL+ HLA+P NI
Sbjct: 337 ESPLANLSAHLANPIGANI 355
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 89/209 (42%), Gaps = 45/209 (21%)
Query: 34 PAAANATSKYAMSAD---------WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERY 84
P AN T+ AM A W P P YL G A GD GFDP L P ER
Sbjct: 350 PIGANITTNLAMFASSGAKEERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERM 409
Query: 85 KESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTL 144
+ +E+ HCR +MLA+V LVPE LG G W Q W V
Sbjct: 410 QVAEVFHCRLSMLALVGC-----LVPELLGNGAWFQI--WDKV---------------DF 447
Query: 145 PTILVIEFLSIAFVEHQRS------MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEI 198
V+ +A +E+ R +++ + YPG FDPL + E K EI
Sbjct: 448 NRFAVVALQVVAPLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTT-----EYTKEAEI 500
Query: 199 KNGRLALLAFVGFCVQQSAYPGTGPLENL 227
KNGRLA+ G V QS G P+ NL
Sbjct: 501 KNGRLAMNGMFGLEV-QSHVTGKSPINNL 528
>gi|48375048|gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nicotiana tabacum]
Length = 199
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 95/195 (48%), Gaps = 23/195 (11%)
Query: 59 LDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNW 118
L G PGD+G+D L PE + + E+IH RWAML + + PE L W
Sbjct: 1 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGC-----ITPEVLE--KW 53
Query: 119 VQAQ----EWAAVPG-----GQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR--SME 165
V+ W G YLG P V ++ +L + + + VE R +
Sbjct: 54 VKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 113
Query: 166 KDPEKKK-YPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223
E YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP
Sbjct: 114 GVGEGNNLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGP 172
Query: 224 LENLATHLADPWHNN 238
LENL HL +P NN
Sbjct: 173 LENLLDHLDNPVANN 187
>gi|424513524|emb|CCO66146.1| light-harvesting protein of photosystem I [Bathycoccus prasinos]
Length = 212
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 94/191 (49%), Gaps = 22/191 (11%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P YLDGS GD+GFDPLRLG E+L +E+EL++ RWAM A + +L
Sbjct: 2 WYPGATAPDYLDGSMAGDYGFDPLRLGANKESLPYLQEAELMNGRWAMYATIG-----VL 56
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDP 168
++ N + W A G A Y + + TL VI + I R K
Sbjct: 57 ATDS----NPSLPKFWEA---GAADY---DIDFKTLVVTQVI-VMGILEALRIRGFMKTG 105
Query: 169 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
E FDP G +VKE+KNGRLA++AF+G V Q A G GP+E
Sbjct: 106 ESGLGANFPFDPAGMDSPAA-----RVKEVKNGRLAMVAFLGM-VSQWAVTGMGPIEGFK 159
Query: 229 THLADPWHNNI 239
HLADP NI
Sbjct: 160 AHLADPTAVNI 170
>gi|308804351|ref|XP_003079488.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029297|gb|AAY27547.1| chloroplast light-harvesting complex I protein precursor Lhca5
[Ostreococcus tauri]
gi|116057943|emb|CAL54146.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 212
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 104/195 (53%), Gaps = 32/195 (16%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P +LDGS GD+GFDPL LG P+ L+ Y+E+EL++ RWAM+AV I+ E G
Sbjct: 37 PAHLDGSIAGDYGFDPLGLGTNPDRLKYYQEAELMNARWAMMAVAG-----IVGTEVAG- 90
Query: 116 GNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR-----SMEKDPEK 170
++ + W A G Y P +L I+F + ++E++R +
Sbjct: 91 ---IEPRWWEA---GTEDYGFPPA------ALLAIQFPVMGYLENKRIQGWMATGSSGVN 138
Query: 171 KKYPGGAFDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 229
+ +P FDP+G SKD K+KEIKNGR A++AFVG VQ Y GP+ L
Sbjct: 139 ETFP---FDPMGMGSKDAN----MKLKEIKNGRAAMIAFVGIVVQAIVYR-EGPVAALKD 190
Query: 230 HLADPWHNNIGDVII 244
H+++P+ N+ I+
Sbjct: 191 HISNPFGCNMATNIM 205
>gi|157987283|gb|ABW07803.1| chlorophyll A-B binding protein [Solenostemon scutellarioides]
Length = 170
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 88/169 (52%), Gaps = 9/169 (5%)
Query: 68 GFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGN--WVQAQEWA 125
G+D L PE R +E E+IH RWAML + F IL + G W +A
Sbjct: 1 GWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQI 60
Query: 126 AVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DPEKKKYPGGAFDP 180
GG YLG P + ++ I + + + +E R + K YPGG+FDP
Sbjct: 61 FSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDKVYPGGSFDP 119
Query: 181 LGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 229
LG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+ENL+T
Sbjct: 120 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLST 167
>gi|87313215|gb|ABD37904.1| light-harvesting chlorophyll-a/b binding protein Lhca2
[Chlamydomonas incerta]
Length = 254
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 100/213 (46%), Gaps = 41/213 (19%)
Query: 58 YLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSSKFFWILVPE 111
YLDG+ PGDFGFDPL L + P N + E SE+IH RWAML + PE
Sbjct: 43 YLDGTLPGDFGFDPLGLLD-PVNSGGFIEPKWLQYSEVIHARWAMLGAAGC-----IAPE 96
Query: 112 ALGLGNWV---QAQEW--AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME- 165
LG + +W + V +Y G W TI +E +++ F E +R +
Sbjct: 97 VLGAAGLIPDATNIKWFESGVIPPAGSYDGY---WADPYTIFFVEIVAMQFAELRRLQDF 153
Query: 166 ------------------KDPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALL 206
K YPGG F + K +E K+KEIKNGRLA+L
Sbjct: 154 RYPGSMGQQYFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAML 213
Query: 207 AFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
A +G+ Q+ G GP +NL HLADP +NNI
Sbjct: 214 AMLGYGA-QAVLTGKGPFQNLVEHLADPVNNNI 245
>gi|193875788|gb|ACF24530.1| chlorophyll a/b binding protein CP29 [Gymnochlora stellata]
Length = 290
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 104/226 (46%), Gaps = 56/226 (24%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W+P RP +LDGS PGD GFDPL L + E
Sbjct: 72 WLPNTVRPTWLDGSLPGDRGFDPLGLSKPAEYLQYDVDQLDQNQAVNFAGKVIGKFDGGI 131
Query: 80 ----------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQE 123
L R++E ELIH RWAMLA + + +V E W QA
Sbjct: 132 DEVDGGNTLSPYSDIFGLRRFRECELIHGRWAMLATLGA-----VVAELSTGVPWDQA-- 184
Query: 124 WAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGF 183
V A YL +P+ T+ + ++E L + E R+ E D +K+ YPGG FDPLG
Sbjct: 185 -GKVELDGARYLNFNLPF-TVSQLTLLEVLLVGGAEIYRNTETDLDKRLYPGGYFDPLGL 242
Query: 184 -SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228
+K ++ + + EIK+GRLA++A G C Q+ G G L+NL+
Sbjct: 243 TTKSAEQTQNLREAEIKHGRLAMVAAFG-CGVQAFTTGEGLLDNLS 287
>gi|303288722|ref|XP_003063649.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
gi|226454717|gb|EEH52022.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
Length = 306
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 101/209 (48%), Gaps = 34/209 (16%)
Query: 51 PGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVP 110
P P Y+DG+ GD+GFDPL+LG + Y+ +E+IH RWAMLA+ I++P
Sbjct: 98 PATDVPSYMDGTLAGDYGFDPLKLG-ADGKINDYRAAEVIHARWAMLAIPG-----IVIP 151
Query: 111 EALGL--GNWVQ-AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKD 167
EALG+ G W + + + G+ L P+ + I+ A VE RS +
Sbjct: 152 EALGIPGGVWTETGKVFLDGEAGRPEILQNPIIFAG------IQIALFAAVEGYRSGKVA 205
Query: 168 P------EKKKY------------PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFV 209
P K K+ PGG D + P+ KVKEIKNGRLA++A +
Sbjct: 206 PPEGFVPGKGKFSGSDFAGLDPINPGGPLDFFNVASTPEDLAILKVKEIKNGRLAMIAML 265
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNN 238
G V Q G GP N H+ADP+ N
Sbjct: 266 GVFV-QGLTTGEGPAANWGKHVADPFGYN 293
>gi|224285629|gb|ACN40533.1| unknown [Picea sitchensis]
Length = 249
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 86/145 (59%), Gaps = 10/145 (6%)
Query: 81 LERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVP 140
L+R++E ELIH RWAML V+ + L E W A + V G ++Y G +P
Sbjct: 104 LQRFRECELIHGRWAMLGVLGA-----LAVEGFTGIYWQDAGKVELVEG--SSYFGFSLP 156
Query: 141 WGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIK 199
+ + T+++IE L + ++E QR+ E DPE + YPGG FDP G + D K + K+ EIK
Sbjct: 157 F-NMSTLILIEVLLLGYIEFQRNAEVDPETRLYPGGKYFDPFGLAVDEIKKDRLKLAEIK 215
Query: 200 NGRLALLAFVGFCVQQSAYPGTGPL 224
+ RLA++AF+ F + Q+A GPL
Sbjct: 216 HARLAMVAFLIFAI-QAAVTSKGPL 239
>gi|15487738|gb|AAL00912.1|AF398734_1 ASCAB9-C [Argyroxiphium sandwicense]
gi|15487744|gb|AAL00915.1|AF398737_1 ASCAB9-C [Dubautia laxa]
Length = 171
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 15/168 (8%)
Query: 84 YKESELIHCRWAMLAVVS-------SKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLG 136
Y+ ELIH RWAML +K+ PEA+ W + + G Y G
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAV----WFKTGALL-LDGNTLNYFG 55
Query: 137 TPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKKYPGGAFDPLGFSKDPQKFEEYKV 195
+P L +V E + + E+ R + D E K +PGG FDPLG +KDP +F KV
Sbjct: 56 KNIPI-NLVVAVVTEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKV 114
Query: 196 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
KEIKNGRLA+ + F + Q+ G GP+ENLA+HL+DP+ NN+ VI
Sbjct: 115 KEIKNGRLAMFSMFAFFI-QAYVTGQGPVENLASHLSDPFGNNLLTVI 161
>gi|255087370|ref|XP_002505608.1| lycopene beta cyclase [Micromonas sp. RCC299]
gi|226520878|gb|ACO66866.1| lycopene beta cyclase [Micromonas sp. RCC299]
Length = 1447
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 97/191 (50%), Gaps = 31/191 (16%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
PPYL G PGD G+DPL++G ++ + +E ELIH RWAMLA + +LVPE+
Sbjct: 1262 PPYLTGEMPGDVGWDPLQMG-AQRDIMKLRERELIHGRWAMLAAIG-----VLVPESTAR 1315
Query: 114 -------GLGNWVQAQEWAAVPGG--QATYLGTPVPWGT-------LPTILVIEFLSIAF 157
G W EW G + TYLG +PWG LP V E L
Sbjct: 1316 LSLFGTPGQHWWNTHIEWTGTNSGIPELTYLGENIPWGVFWLPIIHLPLFFVAEMLRTGR 1375
Query: 158 VEHQRSMEKDPEKKKYPGGA-FDPLGFSK--DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
+E + + D + YPGG FDPLG ++ + K EI++ RLA++A GF V+
Sbjct: 1376 LEVEAFKDLD---RLYPGGKLFDPLGIGGGVSDEELKILKTIEIQHCRLAMIASFGFIVE 1432
Query: 215 QSAYPGTGPLE 225
A+ G GPL+
Sbjct: 1433 ALAW-GAGPLD 1442
>gi|413922347|gb|AFW62279.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 242
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 89/178 (50%), Gaps = 34/178 (19%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS 101
K +W+PG P P YLDGS PGD GFDPL L E PENL Y ++EL++ RWAML V
Sbjct: 42 KAEAKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAG 101
Query: 102 SKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQ 161
+L+PE L + A +W G++ Y + T+ VIEF+ +VE +
Sbjct: 102 -----MLIPEVLTKAGLINAPQW--YDAGKSEYFASSS------TLFVIEFILFHYVEIR 148
Query: 162 R--------SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGR 202
R S+ +DP K YPG F+PL F+ E K KE+ N +
Sbjct: 149 RWQDIKNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAPT----LEAKEKELANAQ 202
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 178 FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 213
FDPLG ++DP+ Y E+ NGR A+L G +
Sbjct: 69 FDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLI 104
>gi|87313203|gb|ABD37898.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Acutodesmus obliquus]
Length = 223
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 88/178 (49%), Gaps = 20/178 (11%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W+ GE P YL G GD+G+D L PE +RY+E ELIH RWAML + +
Sbjct: 53 WLSGET-PAYLTGEFAGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGC-----I 106
Query: 109 VPEALGLGN-------WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVE 159
PE L W +A GG YLG V ++ L+++ + + VE
Sbjct: 107 TPELLANNGTPIAEPVWFKAGAQIFQDGG-LNYLGNENLVHAQSIIVTLLVQVILMGTVE 165
Query: 160 HQRSM---EKDPEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 213
R + K YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V
Sbjct: 166 GYRVNGGPAGEGLDKLYPGGDFFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV 223
>gi|145078670|tpg|DAA05880.1| TPA_inf: chloroplast light-harvesting protein CP29 precursor Lhcb4
[Euglena gracilis]
Length = 263
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 96/208 (46%), Gaps = 53/208 (25%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPL---------------------------RLGEVPEN- 80
W P P YLDGS PGD GFDP +G+V E
Sbjct: 40 WFPSAVAPDYLDGSLPGDRGFDPWGFAKPEELLQYTTGTADITLSKNKDEEYVGKVKEER 99
Query: 81 ----------------LERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEW 124
L+R +E ELIH RWAML V+ + LV EA+ W A
Sbjct: 100 DVLTGEPLVPWSSAFGLKRLRECELIHGRWAMLFVLGA-----LVGEAVTGVAWQNAGLV 154
Query: 125 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGF- 183
A G TY G +P+ I E L++ FVE R+ E + EK+ YPGGAFDPLG
Sbjct: 155 EAREG--YTYFGFSLPFSG-SQITWFEVLTMGFVEIFRNTEMNIEKRVYPGGAFDPLGLA 211
Query: 184 SKDPQKFEEYKVKEIKNGRLALLAFVGF 211
SKD + K EIK+ RLA++AF+GF
Sbjct: 212 SKDAETTFRLKEAEIKHARLAMVAFLGF 239
>gi|303324981|pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 95/183 (51%), Gaps = 36/183 (19%)
Query: 74 LGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQAT 133
L E PENL + ++EL++ RWAML V +L+PE + +W A G+
Sbjct: 1 LAEDPENLRWFVQAELVNGRWAMLGVAG-----MLLPEVFTSIGIINVPKWYA--AGKEE 53
Query: 134 YLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKKY---------PGG 176
Y + T+ VIEF+ +VE +R S+ +DP K+Y PGG
Sbjct: 54 YFASS------STLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGG 107
Query: 177 AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 236
F+PL F+ E K KEI NGRL +LAF+GF +Q + G GP +NL H++DPWH
Sbjct: 108 IFNPLNFAPTL----EAKEKEIANGRL-MLAFLGFIIQHNV-TGKGPFDNLLQHISDPWH 161
Query: 237 NNI 239
N I
Sbjct: 162 NTI 164
>gi|15487754|gb|AAL00920.1|AF398742_1 ASCAB9 [Centromadia pungens]
Length = 171
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 88/167 (52%), Gaps = 13/167 (7%)
Query: 84 YKESELIHCRWAMLAVVS-------SKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLG 136
Y+ ELIH RWAML +K+ PEA+ W + + G Y G
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAV----WFKTGALL-LDGNTLNYFG 55
Query: 137 TPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVK 196
+P + ++ L ++ + D E K +PGG FDPLG +KDP +F KVK
Sbjct: 56 KNIPINLVVAVVAEVVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVK 115
Query: 197 EIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
EIKNGRLA+ + F + Q+ G GP+ENLA+HL+DP+ NN+ VI
Sbjct: 116 EIKNGRLAMFSMFAFFI-QAYVTGQGPVENLASHLSDPFGNNLLTVI 161
>gi|308811240|ref|XP_003082928.1| unnamed protein product [Ostreococcus tauri]
gi|63029301|gb|AAY27549.1| chloroplast chlorophyll a/b-binding protein CP26 precursor Lhcb5
[Ostreococcus tauri]
gi|116054806|emb|CAL56883.1| unnamed protein product [Ostreococcus tauri]
Length = 316
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 103/219 (47%), Gaps = 47/219 (21%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YLDG+ GD+GFDPL LG ++ Y+ +E++H RWAMLAV +++PEAL
Sbjct: 113 PSYLDGTLAGDYGFDPLGLG-ADGKVKDYRVAEILHARWAMLAVPG-----VVIPEALN- 165
Query: 116 GNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEF------LSIAFVEHQRSMEKD-- 167
+PGG T G G ++EF + + + +D
Sbjct: 166 -----------IPGGVWTETGKVFLDGETGRDSILEFWPIYAAIQVVLMGGAEKFRQDGV 214
Query: 168 ------PEKKKY------------PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFV 209
P K K+ PGG D +K+PQ + KVKEIKNGRLA++A +
Sbjct: 215 GPAGFVPFKGKFEESAFNGLDPVNPGGPLDFFDVAKNPQDLQILKVKEIKNGRLAMIAML 274
Query: 210 GFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGI 248
G V Q A G GP N H+A+P+ N V I GI
Sbjct: 275 GVFV-QGAVTGEGPAANWGKHVANPFGYNF--VTITSGI 310
>gi|454250|emb|CAA82853.1| light-harvesting chlorophyll a/b binding protein [Trifolium repens]
Length = 167
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 83/160 (51%), Gaps = 15/160 (9%)
Query: 89 LIHCRWAMLAVVSSKFFWILVPEALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTL 144
+IH RWAML + F IL + G W +A GG YLG P + ++
Sbjct: 1 VIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSI 59
Query: 145 PTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEI 198
I + + + FVE R DP YPGGAFDPLG + DP F E KVKE+
Sbjct: 60 LAIWATQVVLMGFVEGYRIGGGPLGEGLDP---LYPGGAFDPLGLADDPDAFAELKVKEL 116
Query: 199 KNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
KNGRLA+ + GF V Q+ G GP++NL HLADP NN
Sbjct: 117 KNGRLAMFSMFGFFV-QAIVTGKGPVQNLYDHLADPVANN 155
>gi|145079253|tpg|DAA05906.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm8 [Acetabularia acetabulum]
Length = 220
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 90/183 (49%), Gaps = 22/183 (12%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEAL-- 113
P YL G PGD+G+D L PE + Y+E ELIH RWAML + + PE L
Sbjct: 46 PSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGC-----VTPEILSK 100
Query: 114 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 165
G W +A GG YLG + ++ IL + + + +E R +
Sbjct: 101 YGGVSFGESVWFKAGSQIFQEGG-LDYLGNSNLIHAQSILAILGCQVVLMGLIEAYR-VN 158
Query: 166 KDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
P + +PG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 159 GGPLGEGLDPLHPGDKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYV-QAIVTGK 217
Query: 222 GPL 224
GP+
Sbjct: 218 GPI 220
>gi|116792703|gb|ABK26463.1| unknown [Picea sitchensis]
Length = 251
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 94/191 (49%), Gaps = 31/191 (16%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111
GEP P YL G PGD+G+D L PE + +E E+IH RWAML + F +L
Sbjct: 76 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARN 134
Query: 112 ALGLGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 167
+ G W +A GG YLG+P V ++ IL + + + +E R
Sbjct: 135 GVKFGEAVWFKAGAQIFSEGG-LDYLGSPNLVHAQSILAILACQVILMGAIEGYRV---- 189
Query: 168 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
A PLG +VKE+KNGRLA+ + GF V Q+ G GPLENL
Sbjct: 190 ---------AGGPLG-----------EVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENL 228
Query: 228 ATHLADPWHNN 238
A HLADP +NN
Sbjct: 229 ADHLADPVNNN 239
>gi|145346713|ref|XP_001417828.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144578056|gb|ABO96121.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 185
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 108/203 (53%), Gaps = 33/203 (16%)
Query: 49 WMPGEPRPP-YLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWI 107
W+P + P +LDG+ GD+GFDPL LG P L+ Y+E+EL++ RWAM+AV I
Sbjct: 2 WLPAPYKAPAHLDGTVAGDYGFDPLGLGSDPTRLKYYQEAELMNARWAMMAVAG-----I 56
Query: 108 LVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR----- 162
+ E G ++ + W A G Y P +L ++ + ++E++R
Sbjct: 57 VGTEIAG----IEPRWWEA---GTEDYGFPP------QALLAVQLPVMGYLENKRIQGWL 103
Query: 163 SMEKDPEKKKYPGGAFDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221
+ + +P FDP+G SKD E+ K+KEIKNGR A++AFVG VQ Y
Sbjct: 104 ATGSSGVNETFP---FDPMGMGSKD----EKMKLKEIKNGRAAMIAFVGIVVQGIVYR-E 155
Query: 222 GPLENLATHLADPWHNNIGDVII 244
GP+ L H+A+P+ N+ I+
Sbjct: 156 GPVAALKDHVANPFGCNMATNIM 178
>gi|15487762|gb|AAL00924.1|AF398746_1 ASCAB9 [Carlquistia muirii]
Length = 171
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 90/168 (53%), Gaps = 15/168 (8%)
Query: 84 YKESELIHCRWAMLAVVS-------SKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLG 136
Y+ ELIH RWAML +K+ PEA+ W + + G Y G
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAV----WFKTGALL-LDGNTLNYFG 55
Query: 137 TPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKKYPGGAFDPLGFSKDPQKFEEYKV 195
+P + ++ + + E+ R + D E K +PGG FDPLG +KDP +F KV
Sbjct: 56 KNIPINLVVAVVAEV-VLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKV 114
Query: 196 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
KEIKNGRLA+ + F + Q+ G GP+ENLA+HL+DP+ NN+ VI
Sbjct: 115 KEIKNGRLAMFSMFAFFI-QAYVAGQGPVENLASHLSDPFGNNLLTVI 161
>gi|15487716|gb|AAL00901.1|AF398723_1 ASCAB9-A [Argyroxiphium caliginis]
gi|15487720|gb|AAL00903.1|AF398725_1 ASCAB9-A [Dubautia laevigata]
gi|15487726|gb|AAL00906.1|AF398728_1 ASCAB9-A [Dubautia plantaginea]
gi|15487730|gb|AAL00908.1|AF398730_1 ASCAB9-A [Dubautia sherffiana]
gi|15487732|gb|AAL00909.1|AF398731_1 ASCAB9-A [Wilkesia gymnoxiphium]
gi|15487734|gb|AAL00910.1|AF398732_1 ASCAB9-B [Argyroxiphium caliginis]
gi|15487736|gb|AAL00911.1|AF398733_1 ASCAB9-B [Argyroxiphium sandwicense]
gi|15487740|gb|AAL00913.1|AF398735_1 ASCAB9-B [Dubautia laevigata]
gi|15487742|gb|AAL00914.1|AF398736_1 ASCAB9-C [Dubautia latifolia]
gi|15487746|gb|AAL00916.1|AF398738_1 ASCAB9-B [Dubautia plantaginea]
gi|15487748|gb|AAL00917.1|AF398739_1 ASCAB9-C [Dubautia scabra]
gi|15487750|gb|AAL00918.1|AF398740_1 ASCAB9-B [Wilkesia gymnoxiphium]
gi|15487758|gb|AAL00922.1|AF398744_1 ASCAB9 [Harmonia nutans]
gi|15487760|gb|AAL00923.1|AF398745_1 ASCAB9 [Osmadenia tenella]
gi|15487764|gb|AAL00925.1|AF398747_1 ASCAB9 [Anisocarpus scabridus]
gi|156046244|gb|ABU42590.1| ASCAB9 [Dubautia arborea]
gi|156046246|gb|ABU42591.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 90/168 (53%), Gaps = 15/168 (8%)
Query: 84 YKESELIHCRWAMLAVVS-------SKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLG 136
Y+ ELIH RWAML +K+ PEA+ W + + G Y G
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAV----WFKTGALL-LDGNTLNYFG 55
Query: 137 TPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKKYPGGAFDPLGFSKDPQKFEEYKV 195
+P + ++ + + E+ R + D E K +PGG FDPLG +KDP +F KV
Sbjct: 56 KNIPINLVVAVVAEV-VLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKV 114
Query: 196 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
KEIKNGRLA+ + F + Q+ G GP+ENLA+HL+DP+ NN+ VI
Sbjct: 115 KEIKNGRLAMFSMFAFFI-QAYVTGQGPVENLASHLSDPFGNNLLTVI 161
>gi|115831|sp|P15773.1|CB2_MALDO RecName: Full=Chlorophyll a-b binding protein AB10, chloroplastic;
AltName: Full=LHCII type I CAB-AB10; Short=LHCP; Flags:
Precursor
gi|19541|emb|CAA35690.1| unnamed protein product [Malus x domestica]
Length = 268
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 116/245 (47%), Gaps = 25/245 (10%)
Query: 4 NTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYA--MSADWMPGEPRPPYLDG 61
N + S I T F + ++KSK ++ + KY S +W P YL G
Sbjct: 27 NPISSTLIVTAGFTMLKHAAKSKVSSST-----CDRRVKYLGPFSGEW------PSYLTG 75
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGN--WV 119
PGD+G+D L PE + +E E+IH R AM A + F +L G G W
Sbjct: 76 EFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWF 135
Query: 120 QAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK----Y 173
+A GG YLG P V ++ I + + + VE R + + P + Y
Sbjct: 136 KAGAQIFSEGG-LDYLGNPSLVHAQSILAIWTTKVILMGAVEGYR-IARGPLGEVTDPLY 193
Query: 174 PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 233
PG +FD LG ++D + F E KVKE+KNGRLA+ + GF V Q+ LENLA HL
Sbjct: 194 PG-SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFV-QAIVSRKDRLENLADHLGW 251
Query: 234 PWHNN 238
+NN
Sbjct: 252 TVNNN 256
>gi|15487752|gb|AAL00919.1|AF398741_1 ASCAB9-C [Wilkesia gymnoxiphium]
Length = 171
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 90/168 (53%), Gaps = 15/168 (8%)
Query: 84 YKESELIHCRWAMLAVVS-------SKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLG 136
Y+ ELIH RWAML +K+ PEA+ W + + G Y G
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAV----WFKTGALL-LDGNTLNYFG 55
Query: 137 TPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKKYPGGAFDPLGFSKDPQKFEEYKV 195
+P + ++ + + E+ R + D E K +PGG FDPLG +KDP +F KV
Sbjct: 56 KNIPINLVVAVVAEV-VLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKV 114
Query: 196 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
KEIKNGRLA+ + F + Q+ G GP+ENLA+HL+DP+ NN+ VI
Sbjct: 115 KEIKNGRLAMFSMFAFFI-QAYVTGQGPVENLASHLSDPFGNNLLTVI 161
>gi|157987285|gb|ABW07804.1| light-harvesting chlorphyll binding protein 3 [Solenostemon
scutellarioides]
Length = 193
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 91/186 (48%), Gaps = 19/186 (10%)
Query: 66 DFGFDPLRLGEVPENLERYKESELIHCRWAMLAV-------VSSKFFWILVPEALGLGNW 118
D+G+D L PE + + E+IH RWAML V K+ + E + W
Sbjct: 1 DYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWLNVTFKEPV----W 56
Query: 119 VQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKY 173
+A GG YLG P V ++ +L + + + VE R D Y
Sbjct: 57 FKAGAQIFTEGG-LDYLGNPNLVHAQSILAVLGFQVVVMGLVEGFRINGLDGVGEGNDLY 115
Query: 174 PGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 232
PGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLENL HL
Sbjct: 116 PGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLD 174
Query: 233 DPWHNN 238
+P NN
Sbjct: 175 NPVANN 180
>gi|302837618|ref|XP_002950368.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902598|gb|AAD55569.1|AF110787_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300264373|gb|EFJ48569.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 214
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 97/197 (49%), Gaps = 34/197 (17%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W+PG P +L GS GD GFDPL LG+ L+ Y E+E + RWAM+AV IL
Sbjct: 31 WLPGLSPPAHLKGSLAGDSGFDPLGLGQDEGRLKWYAEAEKTNGRWAMMAVTG-----IL 85
Query: 109 VPEALGLG-NWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR----- 162
E LG+ +W +A G Y P + IEF+ + F+E +R
Sbjct: 86 GQELLGVTPSWYEA--------GAKEYDIPSTP------LTAIEFIVMGFLEIKRYQGFK 131
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
+ +P FDP G + KE+KNGRLA++AFVGF V Q+ T
Sbjct: 132 TTGTSGFINSFP---FDPAGLNS-----ASMATKEVKNGRLAMVAFVGFAV-QALVTRTQ 182
Query: 223 PLENLATHLADPWHNNI 239
P+E L HL+DP+ NI
Sbjct: 183 PIEGLTKHLSDPFGKNI 199
>gi|87313233|gb|ABD37912.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Chlamydomonas incerta]
Length = 232
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 86/172 (50%), Gaps = 19/172 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE +RY+E ELIH RWAML + + PE L
Sbjct: 63 PAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHARWAMLGALGC-----VTPELLAK 117
Query: 116 GN-------WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSM-- 164
W +A GG YLG + ++ L ++ + + +E R
Sbjct: 118 NGTPIAEPVWFKAGAQIFQEGG-LDYLGNAGLIHAQSILATLAVQVILMGAIEGYRVNGG 176
Query: 165 -EKDPEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
+ K +PGG FDPLG ++DP F E KVKEIKNGRLA+ + GF VQ
Sbjct: 177 PAGEGLDKLHPGGQFFDPLGLAEDPDAFAELKVKEIKNGRLAMFSMFGFFVQ 228
>gi|15487718|gb|AAL00902.1|AF398724_1 ASCAB9-A [Argyroxiphium sandwicense]
Length = 171
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 91/168 (54%), Gaps = 15/168 (8%)
Query: 84 YKESELIHCRWAMLAVVS-------SKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLG 136
Y+ ELIH RWAML +K+ PEA+ W + + + G Y G
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAV----WFKTRALL-LDGNTLNYFG 55
Query: 137 TPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKKYPGGAFDPLGFSKDPQKFEEYKV 195
+P + ++ + + E+ R + D E K +PGG FDPLG +KDP +F KV
Sbjct: 56 KNIPINLVVAVVAEV-VLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKV 114
Query: 196 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
KEIKNGRLA+ + F + ++ G GP+ENLA+HL+DP+ NN+ VI
Sbjct: 115 KEIKNGRLAMFSMFAFFI-KAYVTGQGPVENLASHLSDPFGNNLLTVI 161
>gi|412985627|emb|CCO19073.1| unknown [Bathycoccus prasinos]
Length = 291
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 101/201 (50%), Gaps = 27/201 (13%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YLDG GD+GFDPL LG +++Y+ +E+IH RWAMLAV I++PEAL +
Sbjct: 87 PSYLDGKLAGDYGFDPLGLG-ADGAIKQYRVAEVIHARWAMLAVPG-----IVIPEALNI 140
Query: 116 --GNWVQAQEWAAVPGGQATYLGTPVPW---GTLPTILVI----EFLS------IAFVEH 160
G+W + + G G W P I+++ +F S FV
Sbjct: 141 AGGDWRETGK--VFLEGSTGRFGPAELWLGIAVAPLIVLMGGAEKFRSDPASAPSGFVPF 198
Query: 161 QRSME-KDPEKKK--YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSA 217
+ S KD K PGG D + PQ E KVKEIKNGRLA++A +G V Q A
Sbjct: 199 KGSFTGKDFAKLDPINPGGPLDFYNVAATPQDLEILKVKEIKNGRLAMIAMLGVFV-QGA 257
Query: 218 YPGTGPLENLATHLADPWHNN 238
G GP N H+ADP+ N
Sbjct: 258 TTGEGPAANWGKHVADPFGYN 278
>gi|159468772|ref|XP_001692548.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278261|gb|EDP04026.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 213
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 95/193 (49%), Gaps = 26/193 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W+PG P +L G+ GD GFDPL LG+ L+ Y E+E + RWAM+AV IL
Sbjct: 31 WLPGLNPPAHLKGALAGDNGFDPLGLGQDEGRLKWYAEAEKTNGRWAMMAVAG-----IL 85
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTI--LVIEFLSIAFVEHQRSMEK 166
E LG V W A G Y +P L I +V+ FL I + +
Sbjct: 86 GQELLG----VTPAWWEA---GAKEY---DIPAQALTPIEFIVMGFLEIKRYQGFKQTGT 135
Query: 167 DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
+P FDP G + KE+KNGRLA++AF+GFCVQ A T P+E
Sbjct: 136 SGFINSFP---FDPAGMNSP-----SMATKEVKNGRLAMVAFIGFCVQALATR-TQPIEG 186
Query: 227 LATHLADPWHNNI 239
L HLADP+ NI
Sbjct: 187 LTAHLADPFGKNI 199
>gi|157965821|gb|ABW06947.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 926
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 30/197 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P YL G GD GFDP L P+ ER + SE+ H R AMLA+V + +
Sbjct: 198 WFPGGYAPSYLTGQYFGDRGFDPAGLAADPKVFERMRVSEVYHGRLAMLAIVGA-----V 252
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDP 168
VP+ LG G W +A + A + + + + + VE R ++ +
Sbjct: 253 VPDILGKGAWYEAAQNAGIGVNE----------------VAVFTAAYGVVEVARGLKANS 296
Query: 169 E-KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
+ K YPG FDPL + D K EIKNGRLAL +G VQ+ G PL NL
Sbjct: 297 DPTKNYPG--FDPLKLTTDYT-----KEAEIKNGRLALTGMLGLEVQRHV-TGVSPLVNL 348
Query: 228 ATHLADPWHNNIGDVII 244
H+ P ++NI + ++
Sbjct: 349 VEHVKHPLNHNIAESVM 365
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 92/197 (46%), Gaps = 37/197 (18%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W PG P +L G P D GFDPL L P R + SE+ H R +MLA+V S +
Sbjct: 383 WFPGAQPPAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGS-----I 437
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAF-VEHQR----- 162
VPE LG G W + +G V L IL ++IA E+ R
Sbjct: 438 VPELLGKGAWFE--------------VGNSVDGIKLGFIL----MAIAAPTEYWRGNGGF 479
Query: 163 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
+ +K + YPG FDPL + D K EIKNGRLA+ +G Q A G
Sbjct: 480 NWDKGTADRSYPG--FDPLKLTTDYT-----KAAEIKNGRLAMTGLLGLTFQYLA-TGES 531
Query: 223 PLENLATHLADPWHNNI 239
PL NLA HLA+P NI
Sbjct: 532 PLANLAAHLANPVGANI 548
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 90/197 (45%), Gaps = 36/197 (18%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W+P P +L G PGD GFDPL L + P+ R + SE+ H R AML +V
Sbjct: 11 WIPNATPPAHLTGEFPGDRGFDPLGLSKDPKVFARMRISEVFHGRLAMLGIVG------- 63
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRS----- 163
QEW G Y LP + +I IA +E+ R
Sbjct: 64 ----------CVGQEWLFNKGAWFDYSDF-----DLPRLGLIALQVIAPLEYWRGNGGFS 108
Query: 164 -MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222
D + YPG FDPLG + E+ K++EIKNGRLA+ A +G V QS G
Sbjct: 109 WNGNDGPDRSYPG--FDPLGLTT-----EDTKLREIKNGRLAMSAMLGLEV-QSHITGKS 160
Query: 223 PLENLATHLADPWHNNI 239
PL NL HL+ P+ NI
Sbjct: 161 PLTNLGDHLSSPFTANI 177
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 98/212 (46%), Gaps = 38/212 (17%)
Query: 34 PAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCR 93
P A AT+ + W PG P +L G P D GFDPL L P R + SE+ H R
Sbjct: 742 PVAMFATTGHK-DGVWFPGAQPPAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHAR 800
Query: 94 WAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFL 153
+MLA+V S ++PE LG G W + +G V L IL +
Sbjct: 801 LSMLAIVGS-----ILPELLGKGAWFE--------------VGNSVDGIKLGFIL----M 837
Query: 154 SIAF-VEHQR-----SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLA 207
+IA E+ R + +K + YPG FDPL + D K EIKNGRLA+
Sbjct: 838 AIAAPTEYWRGNGGFNWDKGTADRSYPG--FDPLKLTTDYT-----KAAEIKNGRLAMTG 890
Query: 208 FVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
+G Q A G PL NLA HLA+P NI
Sbjct: 891 LLGLTFQYLA-TGESPLANLAAHLANPVGANI 921
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 92/221 (41%), Gaps = 44/221 (19%)
Query: 34 PAAANATSKYAMSAD--------WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYK 85
P AN T+ AM + W P P YL G P D GFDP L P+ ER +
Sbjct: 543 PVGANITTTLAMYSTSGEKYRGLWFPNITPPAYLTGEFPADRGFDPAGLAADPKVYERMR 602
Query: 86 ESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLP 145
+E+ + R AMLA+V + PE LG G W + W V
Sbjct: 603 VAEVFNGRLAMLAIVGCVY-----PELLGNGVWFEV--WNKV---------------DFY 640
Query: 146 TILVIEFLSIAFVEHQRSMEK---DPEKK---KYPGGAFDPLGFSKDPQKFEEYKVKEIK 199
+I +A +E+ R D E+K YPG FDP + E K EIK
Sbjct: 641 RFALISLQVVAPLEYWRGNGGFGWDGEEKYDRSYPG--FDPCNLTT-----EYTKAAEIK 693
Query: 200 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 240
NGRLA++ G VQ GP+ NL HL P NIG
Sbjct: 694 NGRLAMIGMFGLEVQNHV-TAQGPVANLIEHLRHPLAANIG 733
>gi|302849410|ref|XP_002956235.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
gi|300258538|gb|EFJ42774.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
Length = 276
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 100/205 (48%), Gaps = 31/205 (15%)
Query: 58 YLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGN 117
+L+G GD GFDPL LG+ P R++E EL+H RWAML F +VPE L L
Sbjct: 72 HLNGEEAGDAGFDPLELGKDPGAFARFREVELLHARWAMLG-----FVGCMVPELLAL-R 125
Query: 118 WVQAQE--WAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFV-----------EHQ--- 161
V+ E W V G + WG + + I + E+
Sbjct: 126 GVELGEPVWWKV-GASKLNSDLTLNWGGIEGFRIAGKQGIGLIAACQAVLMGGPEYARYV 184
Query: 162 --RSMEKD----PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 214
RS+E P + YPGG FDPL ++ D F + V+EIKNGRLA++A +G V
Sbjct: 185 GIRSLEPVGVFLPGDQNYPGGGPFDPLNYAADADGFVDQAVREIKNGRLAMVAMLGLFV- 243
Query: 215 QSAYPGTGPLENLATHLADPWHNNI 239
Q+A GP++N+ ++DP NI
Sbjct: 244 QAAVTKKGPVQNVMEFVSDPAGENI 268
>gi|302851012|ref|XP_002957031.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
gi|300257587|gb|EFJ41833.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
Length = 270
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 102/218 (46%), Gaps = 51/218 (23%)
Query: 58 YLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSSKFFWILVPE 111
YLDG+ PGDFGFDPL L + P N + E SE+IH RWAML + PE
Sbjct: 57 YLDGTLPGDFGFDPLGLLD-PVNSGGFVEPKWLQYSEVIHGRWAMLGAAGC-----IAPE 110
Query: 112 ALGLG-------NWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR-- 162
LG N V + P G +Y G W TI IE +++ F E +R
Sbjct: 111 ILGAAGLIPEKTNIVWYESGVIPPAG--SYDGY---WADPYTIFFIEIVAMQFAELRRLQ 165
Query: 163 ------SMEK--------------DPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNG 201
SM K DP YPGG F + K +E K+KEIKNG
Sbjct: 166 DFRYPGSMGKQYFLGLEKIFAGSGDP---AYPGGPFFNLFNLGKTEAAMKELKLKEIKNG 222
Query: 202 RLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
RLA+LA +G+ Q+ GP +NL HLADP +NNI
Sbjct: 223 RLAMLAMLGYGA-QATLTREGPFQNLLDHLADPVNNNI 259
>gi|19421770|gb|AAL87738.1|AF244524_1 chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 222
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 95/193 (49%), Gaps = 26/193 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWIL 108
W+PG P +L G+ GD GFDPL LG+ L+ Y E+E + RWAM+AV IL
Sbjct: 31 WLPGLNPPAHLKGALAGDNGFDPLGLGQDEGRLKWYAEAEKTNGRWAMMAVAG-----IL 85
Query: 109 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTI--LVIEFLSIAFVEHQRSMEK 166
E LG V W A G Y +P L I +V+ FL I + +
Sbjct: 86 GQELLG----VTPAWWEA---GAKEY---DIPAQALTPIEFIVMGFLEIKRYQGFKQTGT 135
Query: 167 DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
+P FDP G + KE+KNGRLA++AF+GFCVQ A T P+E
Sbjct: 136 SGFINSFP---FDPAGMNSP-----SMATKEVKNGRLAMVAFIGFCVQALATR-TQPIEG 186
Query: 227 LATHLADPWHNNI 239
L HLADP+ NI
Sbjct: 187 LTAHLADPFGKNI 199
>gi|307104824|gb|EFN53076.1| hypothetical protein CHLNCDRAFT_36644 [Chlorella variabilis]
Length = 275
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 99/217 (45%), Gaps = 48/217 (22%)
Query: 58 YLDGSAPGDFGFDPLRLGEVPENL------ERYKESELIHCRWAMLAVVSSKFFWILVPE 111
YLDG+ PGDFGFDPL L + PE E SE+IHCRWAML + L PE
Sbjct: 63 YLDGTLPGDFGFDPLGLCD-PEGAGGFITPEWLAYSEVIHCRWAMLGIAG-----FLAPE 116
Query: 112 ALGLGNWVQAQEWAAV--------PGGQ-ATYLGTPVPWGTLPTILVIEFLSIAFVEHQR 162
L + A AV P GQ Y W T+ +E + + F E +R
Sbjct: 117 VLATIGAIPASPEEAVWFRSGVIPPAGQYGAY------WTDAYTLFWVEAIMMNFAELKR 170
Query: 163 SME-KDPEKK------------------KYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGR 202
+ + P + YPGG F+ L K P+ ++ + EI+NGR
Sbjct: 171 WQDYQSPGSQGKQYFLGLEAVFGGSGNPAYPGGQFFNMLNLGKTPEAMKKLQTNEIRNGR 230
Query: 203 LALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
LA++A +G C Q+ GP NL HLADP NN+
Sbjct: 231 LAMIACLG-CFGQAVMTTKGPFANLLDHLADPISNNV 266
>gi|15487724|gb|AAL00905.1|AF398727_1 ASCAB9-A [Dubautia laxa]
Length = 171
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 90/168 (53%), Gaps = 15/168 (8%)
Query: 84 YKESELIHCRWAMLAVVS-------SKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLG 136
Y+ ELIH RWAML +K+ PEA+ W + + G Y G
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAV----WFKTGALL-LDGNTLNYFG 55
Query: 137 TPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKKYPGGAFDPLGFSKDPQKFEEYKV 195
+P + ++ + + E+ R + D E K +PGG FDPLG +KDP +F KV
Sbjct: 56 KNIPINLVVAVVAEV-VLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKV 114
Query: 196 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
KEIKNGRLA+ + F + ++ G GP+ENLA+HL+DP+ NN+ VI
Sbjct: 115 KEIKNGRLAMFSMFAFFI-KAYVTGQGPVENLASHLSDPFGNNLLTVI 161
>gi|156046250|gb|ABU42593.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 89/168 (52%), Gaps = 15/168 (8%)
Query: 84 YKESELIHCRWAMLAVVS-------SKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLG 136
Y+ EL H RWAML +K+ PEA+ W + + G Y G
Sbjct: 1 YQAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAV----WFKTGALL-LDGNTLNYFG 55
Query: 137 TPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKKYPGGAFDPLGFSKDPQKFEEYKV 195
+P + ++ + + E+ R + D E K +PGG FDPLG +KDP +F KV
Sbjct: 56 KNIPINLVVAVVAEV-VLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKV 114
Query: 196 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243
KEIKNGRLA+ + F + Q+ G GP+ENLA+HL+DP+ NN+ VI
Sbjct: 115 KEIKNGRLAMFSMFAFFI-QAYVTGQGPVENLASHLSDPFGNNLLTVI 161
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,436,712,426
Number of Sequences: 23463169
Number of extensions: 194923276
Number of successful extensions: 410302
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1418
Number of HSP's successfully gapped in prelim test: 409
Number of HSP's that attempted gapping in prelim test: 404079
Number of HSP's gapped (non-prelim): 2614
length of query: 250
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 111
effective length of database: 9,097,814,876
effective search space: 1009857451236
effective search space used: 1009857451236
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)