BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025577
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 241
Score = 392 bits (1006), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/246 (82%), Positives = 217/246 (88%), Gaps = 8/246 (3%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTA-VSLPAAANATSKYAMSADWMPGEPRPPYL 59
MASN+LMSCGIA +PS+LSSSKSKF +A V LP A N + M+A WMPGEPRP YL
Sbjct: 1 MASNSLMSCGIAAV-YPSLLSSSKSKFVSAGVPLPNAGN-VGRIRMAAHWMPGEPRPAYL 58
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119
DGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAV ILVPEALG GNWV
Sbjct: 59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG-----ILVPEALGYGNWV 113
Query: 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFD 179
+AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFD
Sbjct: 114 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFD 173
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
PLG+SKDP+K EE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI
Sbjct: 174 PLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
Query: 240 GDVIIP 245
GD++IP
Sbjct: 234 GDIVIP 239
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 352 bits (904), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 172/192 (89%), Positives = 177/192 (92%), Gaps = 5/192 (2%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILV 109
MPGEPRP YLDGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAV ILV
Sbjct: 1 MPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG-----ILV 55
Query: 110 PEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPE 169
PEALG GNWV+AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPE
Sbjct: 56 PEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPE 115
Query: 170 KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 229
KKKYPGGAFDPLG+SKDP+K EE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT
Sbjct: 116 KKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 175
Query: 230 HLADPWHNNIGD 241
HLADPWHNNIGD
Sbjct: 176 HLADPWHNNIGD 187
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 318 bits (816), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 156/175 (89%), Positives = 161/175 (92%), Gaps = 5/175 (2%)
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQA 121
SAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAV ILVPEALG GNWV+A
Sbjct: 1 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG-----ILVPEALGYGNWVKA 55
Query: 122 QEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPL 181
QEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPL
Sbjct: 56 QEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPL 115
Query: 182 GFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 236
G+SKDP+K EE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH
Sbjct: 116 GYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 170
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 127/252 (50%), Gaps = 55/252 (21%)
Query: 39 ATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE---------------- 79
A K S D W PG P YLDGS GD+GFDP LG+ E
Sbjct: 1 AQPKSGFSTDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKN 60
Query: 80 ---------------------------NLERYKESELIHCRWAMLAVVSSKFFWILVPEA 112
L+R++E ELIH RWAMLA + + L E
Sbjct: 61 LAGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGA-----LTVEG 115
Query: 113 LGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK 172
L W A + + G ++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+
Sbjct: 116 LTGITWQDAGKVELIEG--SSYLGQPLPF-SMTTLIWIEVLVIGYIEFQRNAELDTEKRL 172
Query: 173 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 232
YPGG FDPLG + DP+K ++ EIK+ RLA++ F+GF V Q+A G GPL N THL+
Sbjct: 173 YPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAV-QAAVTGKGPLNNWVTHLS 231
Query: 233 DPWHNNIGDVII 244
DP H I D +
Sbjct: 232 DPLHTTILDRFL 243
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 134 bits (336), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 129/252 (51%), Gaps = 44/252 (17%)
Query: 9 CGIATTAFPSVLSSSKSKFFTAVSL-PAAANATSKYAMSA---DWMPGEPRPPYLDGSAP 64
CG+ + L S K V+ P + ++ + + A +W+PG P YL GS P
Sbjct: 16 CGLKS----RFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLP 71
Query: 65 GDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEW 124
GD GFDPL L E PENL + ++EL++ RWAML V +L+PE + +W
Sbjct: 72 GDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAG-----MLLPEVFTSIGIINVPKW 126
Query: 125 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---- 172
A G+ Y + T+ VIEF+ +VE +R S+ +DP K+
Sbjct: 127 YAA--GKEEYFASS------STLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 178
Query: 173 -----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 227
YPGG F+PL F+ E K KEI NGRL +LAF+GF +Q + G GP +NL
Sbjct: 179 AGEVGYPGGIFNPLNFAPT----LEAKEKEIANGRL-MLAFLGFIIQHNV-TGKGPFDNL 232
Query: 228 ATHLADPWHNNI 239
H++DPWHN I
Sbjct: 233 LQHISDPWHNTI 244
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 124/248 (50%), Gaps = 40/248 (16%)
Query: 24 KSKFFTAVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVP 78
K K ++ + P+ +TS A+ W PG PP+LDGS PGDFGFDPL LG P
Sbjct: 37 KLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDP 96
Query: 79 ENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTP 138
E+L ++EL+H RWAML I +PE L + W G Q + T
Sbjct: 97 ESLRWNVQAELVHSRWAMLGAAG-----IFIPEFLTKLGILNTPSWYTA-GEQEYFTDT- 149
Query: 139 VPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDP 180
T+ ++E + I + E +R + DP YPGG FDP
Sbjct: 150 ------TTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDP 203
Query: 181 LGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL-ATHLADPWHNN 238
LG+ S PQK +E + KEIKNGRLA+LA +G Q Y GTGP++NL A HLADP H
Sbjct: 204 LGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAAHLADP-HAT 261
Query: 239 IGDVIIPR 246
I P+
Sbjct: 262 IFAAFTPK 269
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IHCRWAML + F +L +
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 92
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 93 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEV 151
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 152 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 207
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 208 NLADHLADPVNNN 220
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IH RWAML + S F +L +
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKF 92
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 93 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 151
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 152 VDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 207
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 208 NLADHLADPVNNN 220
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 103/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P YL G PGD+G+D L PE + +E E+IH RWAML + F +L +
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 92
Query: 116 GN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 166
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 93 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 151
Query: 167 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 152 VDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 207
Query: 226 NLATHLADPWHNN 238
NLA HLADP +NN
Sbjct: 208 NLADHLADPVNNN 220
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 120 bits (301), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 103/200 (51%), Gaps = 33/200 (16%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115
P +LDGS PGDFGFDPL L PE+L ++EL+H RWAML I +PE L
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAG-----IFIPEFLTK 55
Query: 116 GNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD 167
+ W G Q + T T+ ++E + I + E +R + D
Sbjct: 56 LGILNTPSWYTA-GEQEYFTDT-------TTLFIVELVFIGWAEGRRWADILNPGCVNTD 107
Query: 168 P---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQS 216
P YPGG FDPLG+ S PQK +E + KEIKNGRLA+LA +G Q
Sbjct: 108 PIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQH- 166
Query: 217 AYPGTGPLENLATHLADPWH 236
Y GTGP++NL HLADP H
Sbjct: 167 IYTGTGPIDNLFAHLADPGH 186
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 116 bits (291), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 112/220 (50%), Gaps = 38/220 (17%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVVSS 102
W + YLDGS PGD+GFDPL L + PE + E E+I+ R+AML V +
Sbjct: 59 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGA 117
Query: 103 KFFWILVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVE 159
+ PE LG + + A+P + ++ GT W T+ V E + F E
Sbjct: 118 -----IAPEILGKAGLIPQE--TALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAE 170
Query: 160 HQR--------SMEKD-----------PEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIK 199
H+R SM K + YPGG F +PLGF KD + ++ K+KE+K
Sbjct: 171 HRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVK 230
Query: 200 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
NGRLA+LA +G+ V Q+ G GP +NL HL DP HNNI
Sbjct: 231 NGRLAMLAILGYFV-QALVTGVGPYQNLLDHLTDPVHNNI 269
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 94/179 (52%), Gaps = 35/179 (19%)
Query: 78 PENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGT 137
PENL + ++EL++ RWAML V +L+PE + +W A G+ Y +
Sbjct: 1 PENLRWFVQAELVNGRWAMLGVAG-----MLLPEVFTSIGIINVPKWYA--AGKEEYFAS 53
Query: 138 PVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKKY---------PGGAFDP 180
T+ VIEF+ +VE +R S+ +DP K+Y PGG F+P
Sbjct: 54 S------STLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNP 107
Query: 181 LGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
L F+ E K KEI NGRLA+LAF+GF +Q + G GP +NL H++DPWHN I
Sbjct: 108 LNFAPTL----EAKEKEIANGRLAMLAFLGFIIQHNV-TGKGPFDNLLQHISDPWHNTI 161
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 95/183 (51%), Gaps = 36/183 (19%)
Query: 74 LGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQAT 133
L E PENL + ++EL++ RWAML V +L+PE + +W A G+
Sbjct: 1 LAEDPENLRWFVQAELVNGRWAMLGVAG-----MLLPEVFTSIGIINVPKWYA--AGKEE 53
Query: 134 YLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKKY---------PGG 176
Y + T+ VIEF+ +VE +R S+ +DP K+Y PGG
Sbjct: 54 YFASS------STLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGG 107
Query: 177 AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 236
F+PL F+ E K KEI NGRL +LAF+GF +Q + G GP +NL H++DPWH
Sbjct: 108 IFNPLNFAPTL----EAKEKEIANGRL-MLAFLGFIIQHNV-TGKGPFDNLLQHISDPWH 161
Query: 237 NNI 239
N I
Sbjct: 162 NTI 164
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 90/188 (47%), Gaps = 33/188 (17%)
Query: 78 PENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGT 137
PE+L ++EL+H RWAML I +PE L + W G Q + T
Sbjct: 3 PESLRWNVQAELVHSRWAMLGAAG-----IFIPEFLTKLGILNTPSWYTA-GEQEYFTDT 56
Query: 138 PVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FD 179
T+ ++E + I + E +R + DP YPGG FD
Sbjct: 57 T-------TLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFD 109
Query: 180 PLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 238
PLG+ S PQK +E + KEIKNGRLA+LA +G Q Y GTGP++NL HLADP H
Sbjct: 110 PLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGHAT 168
Query: 239 IGDVIIPR 246
I P+
Sbjct: 169 IFAAFTPK 176
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 83/169 (49%), Gaps = 31/169 (18%)
Query: 87 SELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGT 143
E+I+ R+AML + + PE LG + A+ A+P Q + GT W
Sbjct: 5 GEIINGRFAMLGAAGA-----IAPEILGKAGLIPAE--TALPWFQTGVIPPAGTYTYWAD 57
Query: 144 LPTILVIEFLSIAFVEHQR--------SMEKD-----------PEKKKYPGG-AFDPLGF 183
T+ V+E + F EH+R SM K YPGG F+PLGF
Sbjct: 58 NYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGF 117
Query: 184 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 232
KD + +E K+KE+KNGRLA+LA +G+ + Q G GP +NL HLA
Sbjct: 118 GKDEKSLKELKLKEVKNGRLAMLAILGYFI-QGLVTGVGPYQNLLDHLA 165
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVS 101
+ G P Y PG F+PL G+ ++L+ K E+ + R AMLA++
Sbjct: 98 LAGSGNPAY-----PGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILG 144
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 77/161 (47%), Gaps = 27/161 (16%)
Query: 87 SELIHCRWAMLAVVSSKFFWILVPEALG-LGNWVQAQEWAAVPGGQATYLGTPVPWGTLP 145
E+I+ R+AML V + + PE LG +G Q A G GT W
Sbjct: 18 GEVINGRFAMLGAVGA-----IAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNY 72
Query: 146 TILVIEFLSIAFVEHQR--------SMEKD-----------PEKKKYPGGAF-DPLGFSK 185
T+ V+E + F EH+R SM K YPGG F +PLGF K
Sbjct: 73 TLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGK 132
Query: 186 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 226
D + +E K+KE+KNGRLA+LA +G+ + Q G GP +N
Sbjct: 133 DEKSLKELKLKEVKNGRLAMLAILGYFI-QGLVTGVGPYQN 172
>pdb|2XT2|A Chain A, Structure Of The Pentapeptide Repeat Protein Albg, A
Resistance Factor For The Topoisomerase Poison
Albicidin.
pdb|2XT2|B Chain B, Structure Of The Pentapeptide Repeat Protein Albg, A
Resistance Factor For The Topoisomerase Poison Albicidin
Length = 200
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 66 DFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLG-NWVQAQEW 124
D F E N +++E E + C +++++ + F + + LG NW AQ W
Sbjct: 33 DCTFRQCNFTEAELNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQ-W 91
Query: 125 AAVP 128
+V
Sbjct: 92 PSVK 95
>pdb|4GH4|A Chain A, Crystal Structure Of Foot And Mouth Disease Virus A22
Serotype
Length = 210
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 28 FTAVSLPAAA---------NATSKYAMSADWMPGE--PRPPYLDGSAPGDFGFDPLRLGE 76
FT ++LP A N TSKY+ G+ P + P F F ++
Sbjct: 112 FTRLALPYTAPHRVLATVYNGTSKYSAGGTGRRGDLGPLAARVAAQLPASFNFGAIQATT 171
Query: 77 VPENLERYKESELIHCRWAMLAV-VSSK 103
+ E L R K +EL +C +LAV VSS+
Sbjct: 172 IHELLVRMKRAEL-YCPRPLLAVEVSSQ 198
>pdb|2C7G|A Chain A, Fpra From Mycobacterium Tuberculosis: His57gln Mutant
Length = 456
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 16 FPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRP 56
+ +++ S S FF A SL AA+ T M+ D + P P
Sbjct: 5 YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP 45
>pdb|1LQT|A Chain A, A Covalent Modification Of Nadp+ Revealed By The Atomic
Resolution Structure Of Fpra, A Mycobacterium
Tuberculosis Oxidoreductase
pdb|1LQT|B Chain B, A Covalent Modification Of Nadp+ Revealed By The Atomic
Resolution Structure Of Fpra, A Mycobacterium
Tuberculosis Oxidoreductase
pdb|1LQU|A Chain A, Mycobacterium Tuberculosis Fpra In Complex With Nadph
pdb|1LQU|B Chain B, Mycobacterium Tuberculosis Fpra In Complex With Nadph
Length = 456
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 16 FPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRP 56
+ +++ S S FF A SL AA+ T M+ D + P P
Sbjct: 5 YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,346,906
Number of Sequences: 62578
Number of extensions: 361497
Number of successful extensions: 814
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 751
Number of HSP's gapped (non-prelim): 27
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)