Query 025577
Match_columns 250
No_of_seqs 202 out of 1183
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 07:15:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00099 light-harvesting comp 100.0 4.5E-75 9.6E-80 521.1 17.4 243 1-250 1-243 (243)
2 PLN00101 Photosystem I light-h 100.0 2.4E-61 5.1E-66 433.7 16.5 181 45-243 52-249 (250)
3 PLN00187 photosystem II light- 100.0 4.6E-61 9.9E-66 438.3 16.6 191 45-244 51-285 (286)
4 PLN00098 light-harvesting comp 100.0 1.2E-59 2.6E-64 426.0 17.7 188 45-246 61-267 (267)
5 PLN00147 light-harvesting comp 100.0 1.7E-59 3.7E-64 422.3 15.7 191 42-245 41-251 (252)
6 PLN00097 photosystem I light h 100.0 4.3E-59 9.4E-64 417.5 17.1 183 44-240 42-243 (244)
7 PLN00100 light-harvesting comp 100.0 3.7E-58 8E-63 411.5 15.4 181 40-245 29-211 (246)
8 PLN00025 photosystem II light 100.0 8.9E-58 1.9E-62 412.9 16.2 191 45-242 50-254 (262)
9 PLN00048 photosystem I light h 100.0 1.6E-57 3.5E-62 411.6 13.8 189 45-245 41-261 (262)
10 PLN00171 photosystem light-ha 100.0 3.8E-56 8.2E-61 410.6 14.4 192 45-243 107-322 (324)
11 PLN00170 photosystem II light- 100.0 1.1E-50 2.4E-55 365.1 14.8 167 44-228 49-254 (255)
12 PLN00089 fucoxanthin-chlorophy 100.0 1.3E-44 2.8E-49 318.6 12.5 163 47-225 38-208 (209)
13 PF00504 Chloroa_b-bind: Chlor 100.0 3.2E-42 7E-47 288.3 13.7 143 55-215 1-155 (156)
14 PLN00120 fucoxanthin-chlorophy 100.0 1.7E-37 3.7E-42 272.2 12.9 143 69-225 47-199 (202)
15 PLN00098 light-harvesting comp 99.6 1.7E-15 3.6E-20 138.2 4.0 54 171-225 77-131 (267)
16 PLN00101 Photosystem I light-h 99.6 2.9E-15 6.2E-20 135.5 5.0 53 171-224 68-121 (250)
17 PLN00147 light-harvesting comp 99.5 3.1E-14 6.8E-19 129.0 4.8 55 56-115 172-226 (252)
18 PLN00171 photosystem light-ha 99.4 5.5E-14 1.2E-18 130.9 4.5 52 170-222 124-176 (324)
19 PLN00170 photosystem II light- 99.4 7.2E-14 1.6E-18 126.7 5.0 51 171-222 72-123 (255)
20 PLN00097 photosystem I light h 99.4 9.4E-14 2E-18 125.3 4.7 52 171-223 59-111 (244)
21 PLN00048 photosystem I light h 99.4 8.8E-14 1.9E-18 126.7 3.9 51 60-115 186-236 (262)
22 PLN00025 photosystem II light 99.4 1.3E-13 2.9E-18 125.5 4.7 50 171-221 68-118 (262)
23 PLN00100 light-harvesting comp 99.4 1.7E-13 3.6E-18 123.7 4.5 48 170-218 49-97 (246)
24 PLN00089 fucoxanthin-chlorophy 99.4 2.3E-13 5E-18 120.4 4.5 50 61-115 153-203 (209)
25 PLN00187 photosystem II light- 99.4 2.7E-13 5.9E-18 124.7 4.2 52 59-115 210-261 (286)
26 PLN00099 light-harvesting comp 99.4 3.8E-13 8.2E-18 121.4 4.1 48 170-218 58-106 (243)
27 PF00504 Chloroa_b-bind: Chlor 99.3 9.1E-13 2E-17 110.3 3.5 49 58-111 107-155 (156)
28 PLN00120 fucoxanthin-chlorophy 99.0 1.3E-10 2.7E-15 102.6 3.9 45 61-114 142-193 (202)
29 PLN00084 photosystem II subuni 97.8 1.1E-05 2.3E-10 69.9 2.6 44 188-232 130-174 (214)
30 PHA02337 putative high light i 97.8 1.3E-05 2.9E-10 52.3 2.2 28 195-223 4-31 (35)
31 PLN00014 light-harvesting-like 97.2 0.00021 4.5E-09 64.5 2.6 36 194-230 160-195 (250)
32 PHA02337 putative high light i 96.7 0.00085 1.8E-08 43.9 1.7 25 85-114 3-27 (35)
33 PLN00014 light-harvesting-like 93.8 0.022 4.8E-07 51.6 0.7 27 84-115 159-185 (250)
34 PLN00084 photosystem II subuni 88.8 0.2 4.2E-06 43.9 1.1 32 78-114 129-160 (214)
35 PHA00649 hypothetical protein 37.0 33 0.00071 26.1 2.4 25 76-101 31-62 (83)
36 PLN02449 ferrochelatase 33.2 24 0.00053 35.4 1.6 22 203-225 463-484 (485)
37 PF00770 Peptidase_C5: Adenovi 24.6 8.3 0.00018 33.9 -2.9 43 30-77 17-59 (183)
38 PF06993 DUF1304: Protein of u 22.4 1.9E+02 0.0042 23.2 4.8 59 148-215 4-66 (113)
No 1
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=4.5e-75 Score=521.09 Aligned_cols=243 Identities=89% Similarity=1.491 Sum_probs=221.3
Q ss_pred CcccchhhhhccccccccccccccccccccccchhhhcccccccccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhh
Q 025577 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPEN 80 (250)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~P~~ldg~~pGd~GFDPLGLs~~~e~ 80 (250)
||++++|+|.|+.+ .++++++++|+|.+..++.-. ..+.|.+++..|+|+.++|+||||++|||+|||||||++++++
T Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~P~~~~P~~Ldg~~pgd~GfDPlgls~~~~~ 78 (243)
T PLN00099 1 MASNTLMSCGIAAV-FPSLLSSSKSKFASSVPLPNA-NGSSRVTMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPEN 78 (243)
T ss_pred CcchhhhhcCcccc-chhhhhhhhhhhhcccccccC-CccccccccccccCCCCCCccCCCCCCcccCCCccccccCHHH
Confidence 89999999999754 777788999999655554332 4468889999999999999999999999999999999999999
Q ss_pred HhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccCCCccccccccccCCCcccccCCCCCCCchhHHHHHHHHHHHHHHH
Q 025577 81 LERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEH 160 (250)
Q Consensus 81 l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~~~~~~a~~~~~~p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~ 160 (250)
++||||+|||||||||||++| +++||.++.+.|.++.+|..++++..+|.+++++|+.+++++++|+++||++|.
T Consensus 79 ~~~~r~~ELkHGR~AMLAv~G-----~i~~E~l~~~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~ 153 (243)
T PLN00099 79 LERYKESELIHCRWAMLAVPG-----ILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEH 153 (243)
T ss_pred HHHHHHHhccCCcHHHHHHhh-----HHHHHHhccCCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999988889888888888888888888888888899999999999999999
Q ss_pred hhhcccCCCCCcCCCCCCCCCCCCCChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccccCCcchhhhHhhhcCccccccc
Q 025577 161 QRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 240 (250)
Q Consensus 161 ~r~~~~~~~~~~~PGd~FDPLgl~kd~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gPl~~l~~hl~~P~~~ni~ 240 (250)
+|...++++++.||||.|||||+.+|++++++||+||||||||||+|++||++|+..+||++|++||.+||+||||+||.
T Consensus 154 ~r~~~~~~~~~~yPGd~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~~N~~ 233 (243)
T PLN00099 154 QRSMEKDPEKKKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 233 (243)
T ss_pred HhhccCCCCCCcCCCCcCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCccCcee
Confidence 98876655567899999999999999999999999999999999999999999996679999999999999999999999
Q ss_pred cccccCCCCC
Q 025577 241 DVIIPRGIVP 250 (250)
Q Consensus 241 ~~~~~~~~~~ 250 (250)
+.++|+++.|
T Consensus 234 ~~~~~~~~~~ 243 (243)
T PLN00099 234 DIIIPRSISP 243 (243)
T ss_pred eeecccCCCC
Confidence 9999999987
No 2
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=2.4e-61 Score=433.66 Aligned_cols=181 Identities=48% Similarity=0.906 Sum_probs=154.5
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccCCCccccccc
Q 025577 45 MSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEW 124 (250)
Q Consensus 45 ~~~~~~P~~~~P~~ldg~~pGd~GFDPLGLs~~~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~~~~~~a~~~ 124 (250)
.+..|+|+.++|+||||++|||+|||||||++++++++||||+|||||||||||++| +++||.++..+....+.|
T Consensus 52 ~r~~W~P~~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G-----~l~~e~l~~~g~~~~p~w 126 (250)
T PLN00101 52 KKGEWLPGLASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAG-----MLLPEVFTKIGIINAPQW 126 (250)
T ss_pred cccccCCCCCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHH-----HHHHHHhcCCCCcCCCcc
Confidence 357899999999999999999999999999999999999999999999999999999 999999876555444456
Q ss_pred cccCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhcccC-----------------CCCCcCCCCCCCCCCCCCCh
Q 025577 125 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKD-----------------PEKKKYPGGAFDPLGFSKDP 187 (250)
Q Consensus 125 ~~~p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~~~-----------------~~~~~~PGd~FDPLgl~kd~ 187 (250)
.. .+..+|... ...++.+|+++|+++|.+|+++.. +++..||||.|||||++++
T Consensus 127 ~~--ag~~~~~~~------~~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YPGG~FDPLgl~~~- 197 (250)
T PLN00101 127 YD--AGKAEYFAS------SSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT- 197 (250)
T ss_pred cc--ccchhhccc------chHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCccccCCCCccCccCCCcc-
Confidence 43 233334322 245778899999999999986421 1234699999999999876
Q ss_pred hHHHHhhHHHhhhhHHHHHHHHHHHhhcccccCCcchhhhHhhhcCcccccccccc
Q 025577 188 QKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243 (250)
Q Consensus 188 ~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gPl~~l~~hl~~P~~~ni~~~~ 243 (250)
+++|+||||||||||+|++||++|+ .+||+||++||.+||+||||+||++++
T Consensus 198 ---~~~k~kEIKNGRLAM~A~lGf~~Q~-~vTG~gPi~nL~~hladP~~~ni~~~~ 249 (250)
T PLN00101 198 ---EEAKEKELANGRLAMLAFLGFVVQH-NVTGKGPFENLLQHLSDPWHNTIVQTL 249 (250)
T ss_pred ---HHHHHHHHhhcchHHHHHhhHhhee-hccCCChHHHHHHHhcCCcccchhhhc
Confidence 4889999999999999999999999 789999999999999999999999874
No 3
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=4.6e-61 Score=438.32 Aligned_cols=191 Identities=50% Similarity=0.889 Sum_probs=165.6
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhh-------------------------------------------H
Q 025577 45 MSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPEN-------------------------------------------L 81 (250)
Q Consensus 45 ~~~~~~P~~~~P~~ldg~~pGd~GFDPLGLs~~~e~-------------------------------------------l 81 (250)
.+..|+|+..+|+||||++|||||||||||+++||. +
T Consensus 51 ~r~~w~p~~~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l 130 (286)
T PLN00187 51 DRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGL 130 (286)
T ss_pred CccccCCCCCCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHH
Confidence 456799999999999999999999999999988875 6
Q ss_pred hHHHHHhhhhcchhhhhhhhcchhhhhhhhhccCCCccccccccccCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHh
Q 025577 82 ERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQ 161 (250)
Q Consensus 82 ~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~~~~~~a~~~~~~p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~ 161 (250)
+||||+|||||||||||++| |++||+++...|+++.... +..+. .|.+++.+. .++.++++|+++||++|.+
T Consensus 131 ~r~REaELiHGRwAMLAvaG-----~lvpEll~G~~W~~aG~~~-~~~g~-~y~g~~~p~-~~~~l~~iqvllmG~~E~~ 202 (286)
T PLN00187 131 QRFRECELIHGRWAMLATLG-----ALSVEALTGVTWQDAGKVE-LVDGS-SYLGQPLPF-SITTLIWIEVLVIGYIEFQ 202 (286)
T ss_pred HHHHHHHhhhhHHHHHHhhc-----hhhHHhccCCccccccccc-ccccc-cccccccch-hHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999 9999998655577654321 22222 466665544 3567889999999999999
Q ss_pred hhcccCCCCCcCCCC-CCCCCCCCCChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccccCCcchhhhHhhhcCccccccc
Q 025577 162 RSMEKDPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 240 (250)
Q Consensus 162 r~~~~~~~~~~~PGd-~FDPLgl~kd~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gPl~~l~~hl~~P~~~ni~ 240 (250)
|+.+.+..+..|||| .|||||+.+|+++++++|++|||||||||+|++||++|+ .+||+||++||.+|++||+|+||+
T Consensus 203 R~~~~~~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~-~vtg~GPi~nL~~Hladp~~~n~~ 281 (286)
T PLN00187 203 RNAELDPEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQA-AATGKGPLNNWATHLSDPLHTTII 281 (286)
T ss_pred hccCCCCCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HhcCCChHHHHHHHhcCcccccHH
Confidence 987765556679999 799999999999999999999999999999999999999 789999999999999999999999
Q ss_pred cccc
Q 025577 241 DVII 244 (250)
Q Consensus 241 ~~~~ 244 (250)
+++.
T Consensus 282 ~~~~ 285 (286)
T PLN00187 282 DTFS 285 (286)
T ss_pred Hhcc
Confidence 8754
No 4
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=1.2e-59 Score=425.98 Aligned_cols=188 Identities=45% Similarity=0.850 Sum_probs=157.2
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccCCCccccccc
Q 025577 45 MSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEW 124 (250)
Q Consensus 45 ~~~~~~P~~~~P~~ldg~~pGd~GFDPLGLs~~~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~~~~~~a~~~ 124 (250)
.+..|+|+.++|+||||++|||+|||||||++++++++||||+|||||||||||++| +++||.++..+......|
T Consensus 61 ~r~~w~Pg~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G-----~~~~e~l~~~g~~~~~~w 135 (267)
T PLN00098 61 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAG-----ILIPECLERLGFIENFSW 135 (267)
T ss_pred CccccCCCCCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHH-----HHHHHHhcCCCccccccc
Confidence 456799999999999999999999999999999999999999999999999999999 999999765433322233
Q ss_pred cccCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhcccC-----------------CCCCcCCCC-CCCCCCCCC-
Q 025577 125 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKD-----------------PEKKKYPGG-AFDPLGFSK- 185 (250)
Q Consensus 125 ~~~p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~~~-----------------~~~~~~PGd-~FDPLgl~k- 185 (250)
.. .+...|...+ ..++++|+++||++|.+|+.+.. ..+.+|||| +|||||+.+
T Consensus 136 ~~--Ag~~~~~~~~------~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPGg~~FDPlgl~~~ 207 (267)
T PLN00098 136 YD--AGAREYFADP------TTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGLWFDPMMWGRG 207 (267)
T ss_pred cc--ccchhhccCc------hHHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCCCCCCccCCcccCCCC
Confidence 21 1222333322 24678899999999999975421 012479999 799999964
Q ss_pred ChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccccCCcchhhhHhhhcCccccccccccccC
Q 025577 186 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 246 (250)
Q Consensus 186 d~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gPl~~l~~hl~~P~~~ni~~~~~~~ 246 (250)
|+++++++|+||||||||||+|++||++|+ .+||++|++||.+||+||+|+||++++.++
T Consensus 208 d~~~~~~~k~kEikNGRLAM~A~~G~~~q~-~vTG~gPl~nL~~hladP~~~n~~~~~~~~ 267 (267)
T PLN00098 208 SPEPVMVLRTKEIKNGRLAMLAFVGFCFQA-VYTGEGPIENLMAHLADPGHCNVFSAFTSH 267 (267)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-hhcCCChHHHHHHHhcCcccccchhhccCC
Confidence 899999999999999999999999999999 789999999999999999999999987763
No 5
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=1.7e-59 Score=422.26 Aligned_cols=191 Identities=42% Similarity=0.786 Sum_probs=160.0
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccCCCcccc
Q 025577 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQA 121 (250)
Q Consensus 42 ~~~~~~~~~P~~~~P~~ldg~~pGd~GFDPLGLs~~~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~~~~~~a 121 (250)
....++.|+|++++|+||||++|||+|||||||++++++++||||+|||||||||||++| +++||.++..+....
T Consensus 41 ~~~~R~~wlP~~~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G-----~l~~e~~~~~g~~~~ 115 (252)
T PLN00147 41 VAQERPTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAG-----ILFTDLLRVTGIRNL 115 (252)
T ss_pred CCCCccccCCCCCCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhh-----hhHHHHhccCCCcCC
Confidence 345668899999999999999999999999999999999999999999999999999999 999999875443323
Q ss_pred ccccccCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhcccC-------------------CCCCcCCCC-CCCCC
Q 025577 122 QEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKD-------------------PEKKKYPGG-AFDPL 181 (250)
Q Consensus 122 ~~~~~~p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~~~-------------------~~~~~~PGd-~FDPL 181 (250)
+.|... +...+ .+.+.++++++|+++||++|.+|+.+.. ..+.+|||| +||||
T Consensus 116 p~w~~a--g~~~~-----~~~~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~~~~yPGd~~FDPl 188 (252)
T PLN00147 116 PVWYEA--GAVKF-----EFASTRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGLEPGYPGGPLFNPL 188 (252)
T ss_pred cchhhc--ccchh-----ccccchHHHHHHHHHHHHHHHHhhccccCCCccccccccccccccccccCCCCcccccCCcc
Confidence 334221 11111 1233467788899999999998864310 012469999 79999
Q ss_pred CCCCChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccccCCcchhhhHhhhcCcccccccccccc
Q 025577 182 GFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 245 (250)
Q Consensus 182 gl~kd~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gPl~~l~~hl~~P~~~ni~~~~~~ 245 (250)
|+.+|+++++++|+||||||||||+|++||++|+ ++||++|++||.+||+|||||||++++.+
T Consensus 189 Gl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~-~vtg~Gp~~nL~~hladP~~~ni~~~~~~ 251 (252)
T PLN00147 189 GLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQA-SVTHTGPIDNLLTHLSDPWHKTIIQTLSH 251 (252)
T ss_pred ccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HhcCCChHHHHHHHhcCcccchhhhhhcC
Confidence 9999999999999999999999999999999999 79999999999999999999999987653
No 6
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=4.3e-59 Score=417.54 Aligned_cols=183 Identities=41% Similarity=0.729 Sum_probs=152.5
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccCCCcccccc
Q 025577 44 AMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQE 123 (250)
Q Consensus 44 ~~~~~~~P~~~~P~~ldg~~pGd~GFDPLGLs~~~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~~~~~~a~~ 123 (250)
..+..|+|+.+.|+||||++|||+|||||||++++++++||||+|||||||||||++| +++||+++..+....+.
T Consensus 42 ~~R~~w~Pg~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G-----~lv~e~l~~~g~~~~p~ 116 (244)
T PLN00097 42 ADRPTWLPGKAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAG-----CVAPELLTKIGMADLPN 116 (244)
T ss_pred CCCcccCCCCCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhh-----hhHHHHhcCCCcccCCc
Confidence 3457899999999999999999999999999999999999999999999999999999 99999986532211223
Q ss_pred ccccCCCccc-ccCCCCCCCchhHHHHHHHHHHHHHHHhhhcccC------------------CCCCcCCCCCCCCCCCC
Q 025577 124 WAAVPGGQAT-YLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKD------------------PEKKKYPGGAFDPLGFS 184 (250)
Q Consensus 124 ~~~~p~g~~~-~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~~~------------------~~~~~~PGd~FDPLgl~ 184 (250)
|.+. +... |.. ....++.+|+++|+++|.+|+++.. +.+..|||+.|||||+.
T Consensus 117 W~~A--g~~~~~~~------~~~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg~FDPlgl~ 188 (244)
T PLN00097 117 WIDA--AKWDGYWA------GAGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGLFDKFGWA 188 (244)
T ss_pred cccC--Ccchhccc------cchhHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCCCCCCCCccccC
Confidence 3221 1111 211 1235678889999999999986421 11235999899999999
Q ss_pred CChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccccCCcchhhhHhhhcCccccccc
Q 025577 185 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 240 (250)
Q Consensus 185 kd~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gPl~~l~~hl~~P~~~ni~ 240 (250)
+|+++++++|+||||||||||+|++||++|+ .+||+||++||.+|++||+|+||+
T Consensus 189 ~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~-~vTGkGPl~nL~~HladP~~~n~~ 243 (244)
T PLN00097 189 KDEKKAAELKLKEIANGRLAMLAFLGCCAQA-IQTGTGPVDNLFSHLADPGHNGIF 243 (244)
T ss_pred CCHHHHHHHHHHHHHhhHHHHHHHHHHhhhh-hccCCCHHHHHHHHhcCccccccC
Confidence 9999999999999999999999999999999 799999999999999999999986
No 7
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=3.7e-58 Score=411.49 Aligned_cols=181 Identities=41% Similarity=0.657 Sum_probs=155.8
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccCCCcc
Q 025577 40 TSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119 (250)
Q Consensus 40 ~~~~~~~~~~~P~~~~P~~ldg~~pGd~GFDPLGLs~~~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~~~~~ 119 (250)
+.+.+.+..|+|+..+|+||||++|||+|||||||++++++++||||+|||||||||||++| +++||+++.++|.
T Consensus 29 ~~~~~~r~~W~P~~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G-----~~~~E~~~~P~w~ 103 (246)
T PLN00100 29 RVAARARPMWYPGATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAG-----ILFTDAVGLPKFW 103 (246)
T ss_pred ccccCCCcccCCCCCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhh-----hhHHHHhcccchh
Confidence 45556677899999999999999999999999999999999999999999999999999999 9999999887776
Q ss_pred ccccccccCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhcccC-CCCCcCCCC-CCCCCCCCCChhHHHHhhHHH
Q 025577 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKD-PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKE 197 (250)
Q Consensus 120 ~a~~~~~~p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~~~-~~~~~~PGd-~FDPLgl~kd~~~~~~~k~kE 197 (250)
++.. ..|. ...+.++++|+++||++|.+|+++.. .++.++||+ +|||||+.+ +++|+||
T Consensus 104 ~ag~--------~~~~------~~~~~l~~iqill~g~~E~~r~~~~~~~g~~~~pg~~~FDPLGl~~-----~~~K~KE 164 (246)
T PLN00100 104 EAGA--------EKYG------LDLQTLVLIQVVVMAVLEAARYRGFMKTGESGVLSFFPFDPTGMDS-----PEMKVKE 164 (246)
T ss_pred hcch--------hhhc------cchhHHHHHHHHHHHHHhhhcccccccccccCCCCCCCCCcccccH-----HHHHHHH
Confidence 5421 1221 12466788999999999999987532 334567899 899999964 5899999
Q ss_pred hhhhHHHHHHHHHHHhhcccccCCcchhhhHhhhcCcccccccccccc
Q 025577 198 IKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 245 (250)
Q Consensus 198 LkNGRLAMlA~~G~~~q~~~~tG~gPl~~l~~hl~~P~~~ni~~~~~~ 245 (250)
||||||||+||+||++|+ .+||++|++||.+|++||+|+||.++.+.
T Consensus 165 IkNGRLAMlA~lG~~~Q~-~vTG~gPlenL~~hladP~~~ni~~~~~~ 211 (246)
T PLN00100 165 VKNGRLAMLAFLGMVSQY-AVTGKSPLEGLKAHMANPGHVNIFTSSVG 211 (246)
T ss_pred HhhhhHHHHHHHHHhhhh-hhcCCChHHHHHHhccCCcccccccCCCC
Confidence 999999999999999999 78999999999999999999999986543
No 8
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=8.9e-58 Score=412.88 Aligned_cols=191 Identities=42% Similarity=0.713 Sum_probs=161.4
Q ss_pred ccccCC-CCC-CCCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccCC------
Q 025577 45 MSADWM-PGE-PRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLG------ 116 (250)
Q Consensus 45 ~~~~~~-P~~-~~P~~ldg~~pGd~GFDPLGLs~~~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~~------ 116 (250)
.+..|+ |+. ..|+||||++|||+|||||||++++++++||||+|||||||||||++| +++||+++..
T Consensus 50 ~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G-----~i~~e~l~~~g~~~~~ 124 (262)
T PLN00025 50 DRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALG-----CVTPELLAKNGVKFGE 124 (262)
T ss_pred CCccccCCcccCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhh-----hhhHHHhhcCCcCcCc
Confidence 445688 776 589999999999999999999999999999999999999999999999 9999997631
Q ss_pred -CccccccccccCCCcccccCCCC--CCCchhHHHHHHHHHHHHHHHhhhcccC---CCCCcCCCCCCCCCCCCCChhHH
Q 025577 117 -NWVQAQEWAAVPGGQATYLGTPV--PWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGAFDPLGFSKDPQKF 190 (250)
Q Consensus 117 -~~~~a~~~~~~p~g~~~~~~~p~--~~~~~p~~~~~~~~~ig~~E~~r~~~~~---~~~~~~PGd~FDPLgl~kd~~~~ 190 (250)
.|+++.. ..++.+..+|.++|. .+..++.++++|+++||++|.+|+.+.. ..+..||||.|||||+.+|++++
T Consensus 125 ~~W~~ag~-~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~~~~~~~d~~yPG~~FDPlGl~~d~~~~ 203 (262)
T PLN00025 125 AVWFKAGA-QIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTF 203 (262)
T ss_pred cccccccc-ccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccCCcccccccCcCCcccCCccccCCCHHHH
Confidence 2444431 123344456777664 3345667888999999999999986532 12347999999999999999999
Q ss_pred HHhhHHHhhhhHHHHHHHHHHHhhcccccCCcchhhhHhhhcCccccccccc
Q 025577 191 EEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDV 242 (250)
Q Consensus 191 ~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gPl~~l~~hl~~P~~~ni~~~ 242 (250)
+++|+||||||||||+|++||++|+ .+||++|++||.+||+||+||||.++
T Consensus 204 ~~~k~kEikNGRLAMlA~~G~~~q~-~vTG~GPlenL~~hladP~~~n~~~~ 254 (262)
T PLN00025 204 AELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENLADHLADPVANNAWAY 254 (262)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhhh-hhcCCChHHHHHHHhcCccccchhhh
Confidence 9999999999999999999999999 78999999999999999999999875
No 9
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=1.6e-57 Score=411.56 Aligned_cols=189 Identities=40% Similarity=0.724 Sum_probs=153.4
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCcccCCCCCCh-----hhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccCCCcc
Q 025577 45 MSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVP-----ENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119 (250)
Q Consensus 45 ~~~~~~P~~~~P~~ldg~~pGd~GFDPLGLs~~~-----e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~~~~~ 119 (250)
.+..|+|+.+.|+||||++|||+|||||||++.. .+++|+||+|||||||||||++| +++||+++..+..
T Consensus 41 ~r~~w~p~~~~P~yLdG~lPGD~GFDPlGL~~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G-----~lv~Ell~~~g~~ 115 (262)
T PLN00048 41 DRQLWFASKQSLSYLDGTLPGDFGFDPLGLSDPEGAGGFIEPQWLAYGEVINGRFAMLGAAG-----AIAPEILGKAGLI 115 (262)
T ss_pred CCceecCCCCCccccCCCCCCccCCCccccCCccccccchhHHHHHHHHhhcchHHHHHHhh-----HHHHHHhccCCcc
Confidence 4578999999999999999999999999998521 26799999999999999999999 9999998632221
Q ss_pred c---cccccc---cC-CCcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhcccC-C------------------CCCcC
Q 025577 120 Q---AQEWAA---VP-GGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKD-P------------------EKKKY 173 (250)
Q Consensus 120 ~---a~~~~~---~p-~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~~~-~------------------~~~~~ 173 (250)
. ...|.. ++ .+...|..+ -..++++|+++||++|.+|+++.. + .+..|
T Consensus 116 ~~~~~~~w~~ag~~~~~~~~~y~~~------p~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~~~~d~~y 189 (262)
T PLN00048 116 PQETALPWFQSGVIPPAGTYDYWAD------PYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGGSGNPAY 189 (262)
T ss_pred ccccccccccccccccccccccccc------hhHHHHHHHHHhhheeeeccccccCCCcccccccccchhcccccccccc
Confidence 1 112322 11 112223222 235678899999999999886511 1 13469
Q ss_pred CCC-CCCCCCCCCChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccccCCcchhhhHhhhcCcccccccccccc
Q 025577 174 PGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 245 (250)
Q Consensus 174 PGd-~FDPLgl~kd~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gPl~~l~~hl~~P~~~ni~~~~~~ 245 (250)
||| +|||||+.+|+++++++|+||||||||||+|++||++|+ ++||++|++||.+||+||||+||++++.+
T Consensus 190 PG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~-~~tg~gp~~~L~~hladP~~~ni~~~~~~ 261 (262)
T PLN00048 190 PGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQA-LVTGVGPFQNLLDHLADPVNNNVLTNLKF 261 (262)
T ss_pred ccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhh-hhcCCCHHHHHHHHhcCcccccccccccc
Confidence 999 899999999999999999999999999999999999999 78999999999999999999999998754
No 10
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=3.8e-56 Score=410.63 Aligned_cols=192 Identities=42% Similarity=0.744 Sum_probs=156.5
Q ss_pred ccccCCCCC--CCCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccCC------
Q 025577 45 MSADWMPGE--PRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLG------ 116 (250)
Q Consensus 45 ~~~~~~P~~--~~P~~ldg~~pGd~GFDPLGLs~~~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~~------ 116 (250)
.+..|+|.. +.|+||||++|||+|||||||++++++++||||+|||||||||||++| +++||+++..
T Consensus 107 ~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G-----~lv~e~l~~~g~~~~~ 181 (324)
T PLN00171 107 ERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALG-----VVIPEVLDLFGAVHFA 181 (324)
T ss_pred CCccccCCCCCCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhh-----HHHHHHhccCCccccC
Confidence 335688776 689999999999999999999999999999999999999999999999 9999997532
Q ss_pred --CccccccccccCCCcccccCCCC----CCCchhHHHHHHHHHHHHHHHhhhcccC---------CCCCcCCCC-CCCC
Q 025577 117 --NWVQAQEWAAVPGGQATYLGTPV----PWGTLPTILVIEFLSIAFVEHQRSMEKD---------PEKKKYPGG-AFDP 180 (250)
Q Consensus 117 --~~~~a~~~~~~p~g~~~~~~~p~----~~~~~p~~~~~~~~~ig~~E~~r~~~~~---------~~~~~~PGd-~FDP 180 (250)
.|+++.. ..+.+...+|.+.|. .+..++.++++|+++++.+|.+|+.+.+ +++-.|||| +|||
T Consensus 182 ~p~W~~aG~-~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g~~~PGD~gYPGG~~FDP 260 (324)
T PLN00171 182 EPVWWRVGY-AKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDP 260 (324)
T ss_pred ccchhhccc-ccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCccccCCCcccCCcccCCCc
Confidence 2333321 112222223444442 1234567888999988888998876421 233458888 6999
Q ss_pred CCCCCChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccccCCcchhhhHhhhcCcccccccccc
Q 025577 181 LGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243 (250)
Q Consensus 181 Lgl~kd~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gPl~~l~~hl~~P~~~ni~~~~ 243 (250)
||+.+|+++++++|++|||||||||+|++||++|+ .+||++|++||.+|++||+||||++++
T Consensus 261 LGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~-~vTG~GPlenL~~hladP~~~Ni~~~~ 322 (324)
T PLN00171 261 LGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQA-AVTGKGPVQNLVDHLSDPLHNNLLSSL 322 (324)
T ss_pred cccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhH-hhcCCChHHHHHHHhcCccccchHHHh
Confidence 99999999999999999999999999999999999 789999999999999999999999875
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=1.1e-50 Score=365.10 Aligned_cols=167 Identities=42% Similarity=0.745 Sum_probs=139.5
Q ss_pred cccccCCCCCC------CCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccCCC
Q 025577 44 AMSADWMPGEP------RPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGN 117 (250)
Q Consensus 44 ~~~~~~~P~~~------~P~~ldg~~pGd~GFDPLGLs~~~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~~~ 117 (250)
+.+..|+|+.. .|+||||++|||+|||||||++++++++||||+|||||||||||++| +++||.++...
T Consensus 49 ~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G-----~~v~e~l~g~~ 123 (255)
T PLN00170 49 QPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVG-----IFVGQAWSGIP 123 (255)
T ss_pred CCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHh-----hhhHHHccCCC
Confidence 44567999985 69999999999999999999999999999999999999999999999 99999987556
Q ss_pred ccccccccccCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhcccC-----------------------CCCCcCC
Q 025577 118 WVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKD-----------------------PEKKKYP 174 (250)
Q Consensus 118 ~~~a~~~~~~p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~~~-----------------------~~~~~~P 174 (250)
|+++..- ++ +. .| + .+.+++.+|+++||++|.+|+++.. .++..||
T Consensus 124 w~~aG~~---~~----~~-~p--~-~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~g~~~yP 192 (255)
T PLN00170 124 WFEAGAD---PG----AI-AP--F-SFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGLQGYP 192 (255)
T ss_pred hhhCCcc---cc----cc-Cc--c-chHHHHHHHHHHhhhhhheeeccccCCcccccccccccccccccccccCCCcccC
Confidence 7665421 00 11 11 1 2456788999999999999986521 1234699
Q ss_pred CC-CCCCCCCCC---------ChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccccCCcchhhhH
Q 025577 175 GG-AFDPLGFSK---------DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 228 (250)
Q Consensus 175 Gd-~FDPLgl~k---------d~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gPl~~l~ 228 (250)
|+ .|||||+.+ |+++++++|+||||||||||+|++||++|+ .||++||++|.
T Consensus 193 GG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa--~~g~~p~~~l~ 254 (255)
T PLN00170 193 GGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA--GQGKTPLGALG 254 (255)
T ss_pred CCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee--ccCCCchhhhc
Confidence 99 699999975 789999999999999999999999999999 48999999884
No 12
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=1.3e-44 Score=318.64 Aligned_cols=163 Identities=34% Similarity=0.444 Sum_probs=125.2
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCcccCCCCC-ChhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccCCCcccccccc
Q 025577 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGE-VPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125 (250)
Q Consensus 47 ~~~~P~~~~P~~ldg~~pGd~GFDPLGLs~-~~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~~~~~~a~~~~ 125 (250)
+...|++++|+.|||+ .||+|||||||++ ++++++||||+||||||+||||++| +++||.++.++.. ..+.
T Consensus 38 ~g~~pf~~~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G-----~~~~~~~~~pG~~--~~~~ 109 (209)
T PLN00089 38 PGAIGFAAKEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAG-----FIAPDFVRIPGEA--YSFA 109 (209)
T ss_pred ccccccccCCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHH-----HHHHHHHcCCCcc--cccc
Confidence 4567999999999999 9999999999986 5678999999999999999999999 9999998765421 1222
Q ss_pred ccCCCcccccCCCCCCCchhHH-HHHHH-HHHHHHHHhhhcc---cCCCCCcCCCC-CCCCCCC-CCChhHHHHhhHHHh
Q 025577 126 AVPGGQATYLGTPVPWGTLPTI-LVIEF-LSIAFVEHQRSME---KDPEKKKYPGG-AFDPLGF-SKDPQKFEEYKVKEI 198 (250)
Q Consensus 126 ~~p~g~~~~~~~p~~~~~~p~~-~~~~~-~~ig~~E~~r~~~---~~~~~~~~PGd-~FDPLgl-~kd~~~~~~~k~kEL 198 (250)
++|.+.. ++..+|.. +++|+ ++||++|...... ...+++++||| +|||||+ ++|+++++++|++||
T Consensus 110 ~~p~~~~-------a~~~~~~~g~~~Qi~~~ig~~E~~~~~~~~~~~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~El 182 (209)
T PLN00089 110 AIPKTID-------AHDALLKSGAMIQIFAWIGFVDLAVSAPAAAAAAEFDRTPGDFGFDLLALYPKDAAKMEKKKDKEL 182 (209)
T ss_pred ccccHHH-------HHHhhcccccHHHHHHHHHHHHHHHhhccccccccCCCCCCCcCccccccCCCCHHHHHHHHHHHH
Confidence 3332211 11122332 23455 6799999642211 11134579999 8999998 568999999999999
Q ss_pred hhhHHHHHHHHHHHhhcccccCCcchh
Q 025577 199 KNGRLALLAFVGFCVQQSAYPGTGPLE 225 (250)
Q Consensus 199 kNGRLAMlA~~G~~~q~~~~tG~gPl~ 225 (250)
|||||||+|++||++|+ .+||++.++
T Consensus 183 ~NGRlAM~a~~g~~~~~-~~tg~g~~~ 208 (209)
T PLN00089 183 KNGRLAMVAIGGIATGS-AITGHGFPY 208 (209)
T ss_pred hhhHHHHHHHHHHHHHH-HHcCCCCCc
Confidence 99999999999999999 789998764
No 13
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=3.2e-42 Score=288.33 Aligned_cols=143 Identities=45% Similarity=0.707 Sum_probs=113.3
Q ss_pred CCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccCCCcc----ccccccccCCC
Q 025577 55 RPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV----QAQEWAAVPGG 130 (250)
Q Consensus 55 ~P~~ldg~~pGd~GFDPLGLs~~~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~~~~~----~a~~~~~~p~g 130 (250)
+|++|||+++||+|||||||++++ +++||||+|||||||||||++| ++++|+++...+. ....|....
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g-----~~v~e~~~~~~~~~~~~~~~~~~~~~-- 72 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVG-----ALVQEAGTGFPGVPSFLGQPAWAEAG-- 72 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHH-----HHHCHCHSTTTSSS-SSTSSSSSSTT--
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHH-----HHHHHHhccCCcccccccccchhhhh--
Confidence 489999999999999999999976 9999999999999999999999 9999997532211 111132110
Q ss_pred cccccCCCCCCCchh-HHHHHHHHHHHHHHHhhhcccC------CCCCcCCCC-CCCCCCCCCChhHHHHhhHHHhhhhH
Q 025577 131 QATYLGTPVPWGTLP-TILVIEFLSIAFVEHQRSMEKD------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGR 202 (250)
Q Consensus 131 ~~~~~~~p~~~~~~p-~~~~~~~~~ig~~E~~r~~~~~------~~~~~~PGd-~FDPLgl~kd~~~~~~~k~kELkNGR 202 (250)
. . .++ ..+++++++|+++|.++..... ..+..|||| +|||+|+.+|+++++++|++||||||
T Consensus 73 ------~---~-~~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGR 142 (156)
T PF00504_consen 73 ------G---I-PVPAAGWAQILLFIGALEPWRQQGVPEPGEGGGKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGR 142 (156)
T ss_dssp ------S---S-SSHSHHHHHHHHHHHHHHHHHHHHTTTCCTTSSSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHH
T ss_pred ------h---h-hhhhHHHHHHHHHHhHhhhhhcccccCCcccccccccCccccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 0 0 133 3445667899999998876532 124579999 89999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 025577 203 LALLAFVGFCVQQ 215 (250)
Q Consensus 203 LAMlA~~G~~~q~ 215 (250)
|||+|++|+++|+
T Consensus 143 lAMla~~g~~~~e 155 (156)
T PF00504_consen 143 LAMLAFAGFVAQE 155 (156)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999997
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=272.24 Aligned_cols=143 Identities=25% Similarity=0.416 Sum_probs=106.3
Q ss_pred cccCCCCC--ChhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhh-ccCCCccc--cccccccCCCcccccCCCCCCCc
Q 025577 69 FDPLRLGE--VPENLERYKESELIHCRWAMLAVVSSKFFWILVPEA-LGLGNWVQ--AQEWAAVPGGQATYLGTPVPWGT 143 (250)
Q Consensus 69 FDPLGLs~--~~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~-~~~~~~~~--a~~~~~~p~g~~~~~~~p~~~~~ 143 (250)
|||+||++ ++++++||||+|||||||||||++| ++++|. +++++..+ ...+..+|.+. .++..
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G-----~~~~~~g~~~Pg~~~~~g~~~~~~p~~~-------~a~~~ 114 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVG-----YLVTEAGIRLPGDIDYSGTSFSDIPNGF-------AALDA 114 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhcc-----ceeecccccCCCccccccccccccccch-------hhhhh
Confidence 99999974 6899999999999999999999999 999997 44332211 11232222221 12445
Q ss_pred hhHHHHHHH-HHHHHHHHhhhcccCCCCCcCCCC-C--CCCCCCCC-ChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccc
Q 025577 144 LPTILVIEF-LSIAFVEHQRSMEKDPEKKKYPGG-A--FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 218 (250)
Q Consensus 144 ~p~~~~~~~-~~ig~~E~~r~~~~~~~~~~~PGd-~--FDPLgl~k-d~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~ 218 (250)
+|..+++|+ ++|+++|..+..+.+ +++++||| . ++++||.. |++++++||+||||||||||||++||++|+ .+
T Consensus 115 vp~~g~~qi~~~ig~~E~~~~~~~~-~~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe-~l 192 (202)
T PLN00120 115 IPTAGLLQILAFIGFLELAVMKDIT-GEGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHE-QL 192 (202)
T ss_pred cchhHHHHHHHHHHHHHHHhhcccc-cCCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hc
Confidence 676666675 689999987654321 23578996 2 23566554 789999999999999999999999999999 78
Q ss_pred cCCcchh
Q 025577 219 PGTGPLE 225 (250)
Q Consensus 219 tG~gPl~ 225 (250)
+|+.|+-
T Consensus 193 ~g~~~~~ 199 (202)
T PLN00120 193 GVELPII 199 (202)
T ss_pred cCCCcCC
Confidence 9998864
No 15
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.56 E-value=1.7e-15 Score=138.21 Aligned_cols=54 Identities=31% Similarity=0.617 Sum_probs=49.6
Q ss_pred CcCCCC-CCCCCCCCCChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccccCCcchh
Q 025577 171 KKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 225 (250)
Q Consensus 171 ~~~PGd-~FDPLgl~kd~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gPl~ 225 (250)
+.+||| +|||||+++|+++++++|++||||||+||+|++|+++|+ ++++.++++
T Consensus 77 G~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e-~l~~~g~~~ 131 (267)
T PLN00098 77 GSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPE-CLERLGFIE 131 (267)
T ss_pred CCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HhcCCCccc
Confidence 468999 999999999999999999999999999999999999999 677777665
No 16
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.55 E-value=2.9e-15 Score=135.55 Aligned_cols=53 Identities=32% Similarity=0.708 Sum_probs=49.8
Q ss_pred CcCCCC-CCCCCCCCCChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccccCCcch
Q 025577 171 KKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224 (250)
Q Consensus 171 ~~~PGd-~FDPLgl~kd~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gPl 224 (250)
+.+||| +|||||+.+|+++++++|++|||||||||+|++|+++|| ++++.+++
T Consensus 68 G~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e-~l~~~g~~ 121 (250)
T PLN00101 68 GSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPE-VFTKIGII 121 (250)
T ss_pred CCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH-HhcCCCCc
Confidence 468999 999999999999999999999999999999999999999 78888776
No 17
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.47 E-value=3.1e-14 Score=129.00 Aligned_cols=55 Identities=29% Similarity=0.376 Sum_probs=50.7
Q ss_pred CCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccC
Q 025577 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115 (250)
Q Consensus 56 P~~ldg~~pGd~GFDPLGLs~~~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~ 115 (250)
+..+++.+|||++||||||++++++++++|+.||||||+||+|++| +++|+.++.
T Consensus 172 ~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G-----~~~q~~vtg 226 (252)
T PLN00147 172 LEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLG-----FFVQASVTH 226 (252)
T ss_pred ccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHhcC
Confidence 4567778999999999999999999999999999999999999999 999998764
No 18
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.45 E-value=5.5e-14 Score=130.88 Aligned_cols=52 Identities=35% Similarity=0.567 Sum_probs=47.0
Q ss_pred CCcCCCC-CCCCCCCCCChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccccCCc
Q 025577 170 KKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222 (250)
Q Consensus 170 ~~~~PGd-~FDPLgl~kd~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~g 222 (250)
++.+||| +||||||++|+++++++|++||||||+||+|++|+++|+ ++++.+
T Consensus 124 dG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e-~l~~~g 176 (324)
T PLN00171 124 TGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPE-VLDLFG 176 (324)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHH-HhccCC
Confidence 3568999 999999999999999999999999999999999999999 565443
No 19
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.44 E-value=7.2e-14 Score=126.70 Aligned_cols=51 Identities=43% Similarity=0.748 Sum_probs=47.2
Q ss_pred CcCCCC-CCCCCCCCCChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccccCCc
Q 025577 171 KKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 222 (250)
Q Consensus 171 ~~~PGd-~FDPLgl~kd~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~g 222 (250)
+.+||| +|||||+.+|+++++++|++||+|||+||+|++|+++|+ +++|..
T Consensus 72 g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e-~l~g~~ 123 (255)
T PLN00170 72 GSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ-AWSGIP 123 (255)
T ss_pred ccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHH-HccCCC
Confidence 468999 999999999999999999999999999999999999999 677653
No 20
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.43 E-value=9.4e-14 Score=125.29 Aligned_cols=52 Identities=25% Similarity=0.483 Sum_probs=47.6
Q ss_pred CcCCCC-CCCCCCCCCChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccccCCcc
Q 025577 171 KKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223 (250)
Q Consensus 171 ~~~PGd-~FDPLgl~kd~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gP 223 (250)
+..||| +||||||++|+++++++|++||||||+||+|++|+++|| ++++.+.
T Consensus 59 G~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e-~l~~~g~ 111 (244)
T PLN00097 59 GSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPE-LLTKIGM 111 (244)
T ss_pred CCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHH-HhcCCCc
Confidence 467999 999999999999999999999999999999999999999 6766543
No 21
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.42 E-value=8.8e-14 Score=126.74 Aligned_cols=51 Identities=25% Similarity=0.408 Sum_probs=47.6
Q ss_pred CCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccC
Q 025577 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115 (250)
Q Consensus 60 dg~~pGd~GFDPLGLs~~~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~ 115 (250)
|..+|||++||||||++++++++++|+.||||||+||+|++| +++|++++.
T Consensus 186 d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G-----~~~q~~~tg 236 (262)
T PLN00048 186 NPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILG-----YFIQALVTG 236 (262)
T ss_pred ccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhh-----HhhhhhhcC
Confidence 456999999999999999999999999999999999999999 999998753
No 22
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.41 E-value=1.3e-13 Score=125.46 Aligned_cols=50 Identities=26% Similarity=0.545 Sum_probs=46.0
Q ss_pred CcCCCC-CCCCCCCCCChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccccCC
Q 025577 171 KKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 221 (250)
Q Consensus 171 ~~~PGd-~FDPLgl~kd~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~ 221 (250)
+.+||| +||||||++|+++++++|++||||||+||+|++|+++|+ ++++.
T Consensus 68 g~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e-~l~~~ 118 (262)
T PLN00025 68 GEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPE-LLAKN 118 (262)
T ss_pred CcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHH-HhhcC
Confidence 467999 999999999999999999999999999999999999999 56544
No 23
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.40 E-value=1.7e-13 Score=123.74 Aligned_cols=48 Identities=29% Similarity=0.506 Sum_probs=44.9
Q ss_pred CCcCCCC-CCCCCCCCCChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccc
Q 025577 170 KKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 218 (250)
Q Consensus 170 ~~~~PGd-~FDPLgl~kd~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~ 218 (250)
++.+||| +|||||+++|+++++++|++||||||+||+|++|+++|+ ++
T Consensus 49 dg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E-~~ 97 (246)
T PLN00100 49 DGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTD-AV 97 (246)
T ss_pred CCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHH-Hh
Confidence 4578999 999999999999999999999999999999999999999 44
No 24
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.39 E-value=2.3e-13 Score=120.43 Aligned_cols=50 Identities=38% Similarity=0.528 Sum_probs=45.7
Q ss_pred CCCCCCCCcccCCCC-CChhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccC
Q 025577 61 GSAPGDFGFDPLRLG-EVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115 (250)
Q Consensus 61 g~~pGd~GFDPLGLs-~~~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~ 115 (250)
+..|||+||||+||. +++++++++|.+||||||+||+|++| +++||.++.
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g-----~~~~~~~tg 203 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGG-----IATGSAITG 203 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHH-----HHHHHHHcC
Confidence 468999999999994 58899999999999999999999999 999998653
No 25
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.38 E-value=2.7e-13 Score=124.73 Aligned_cols=52 Identities=35% Similarity=0.398 Sum_probs=48.3
Q ss_pred CCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccC
Q 025577 59 LDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115 (250)
Q Consensus 59 ldg~~pGd~GFDPLGLs~~~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~ 115 (250)
.+..+|||++||||||++++++++++|++||||||+||+|++| +++|+.++.
T Consensus 210 ~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG-----~~vq~~vtg 261 (286)
T PLN00187 210 EKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLG-----FAVQAAATG 261 (286)
T ss_pred CCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHH-----HHHHHHhcC
Confidence 3667999999999999999999999999999999999999999 999999753
No 26
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.36 E-value=3.8e-13 Score=121.43 Aligned_cols=48 Identities=38% Similarity=0.634 Sum_probs=44.8
Q ss_pred CCcCCCC-CCCCCCCCCChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccc
Q 025577 170 KKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 218 (250)
Q Consensus 170 ~~~~PGd-~FDPLgl~kd~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~ 218 (250)
++.+||| +|||||+++++++++++|++||||||+||+|++|+++|| ++
T Consensus 58 dg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E-~l 106 (243)
T PLN00099 58 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE-AL 106 (243)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHH-Hh
Confidence 4578999 999999999999999999999999999999999999999 44
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.32 E-value=9.1e-13 Score=110.34 Aligned_cols=49 Identities=45% Similarity=0.641 Sum_probs=46.2
Q ss_pred CCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhh
Q 025577 58 YLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPE 111 (250)
Q Consensus 58 ~ldg~~pGd~GFDPLGLs~~~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e 111 (250)
..++..|||.+|||+|+.++++..+++|.+||+|||+||+|++| ++++|
T Consensus 107 ~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g-----~~~~e 155 (156)
T PF00504_consen 107 GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAG-----FVAQE 155 (156)
T ss_dssp SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHH-----HHHHH
T ss_pred cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH-----HHHhc
Confidence 56789999999999999988899999999999999999999999 99887
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.04 E-value=1.3e-10 Score=102.60 Aligned_cols=45 Identities=33% Similarity=0.544 Sum_probs=38.6
Q ss_pred CCCCCC-------CCcccCCCCCChhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhcc
Q 025577 61 GSAPGD-------FGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALG 114 (250)
Q Consensus 61 g~~pGd-------~GFDPLGLs~~~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~ 114 (250)
+..||| +||||+ +++..+++|.+||||||+||+|+.| ++++|.+.
T Consensus 142 ~~~pGd~~~g~~d~gfdp~----~~~~~~~~~~~EL~NGRLAMiai~G-----~~~qe~l~ 193 (202)
T PLN00120 142 GEFVGDFRNGYIDFGWDSF----DEETKLKKRAIELNQGRAAQMGILA-----LMVHEQLG 193 (202)
T ss_pred CCCCCccCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHcc
Confidence 578884 556665 5788999999999999999999999 99999864
No 29
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=97.82 E-value=1.1e-05 Score=69.92 Aligned_cols=44 Identities=36% Similarity=0.490 Sum_probs=37.7
Q ss_pred hHHHHhhHHHhhhhHHHHHHHHHHHhhccccc-CCcchhhhHhhhc
Q 025577 188 QKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP-GTGPLENLATHLA 232 (250)
Q Consensus 188 ~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~t-G~gPl~~l~~hl~ 232 (250)
...+|.|..|+.||||||++|+--++-| ++| |+||+.|+...--
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE-~lTgGqGiL~Ql~~ETG 174 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGD-AVTGGMGPLEQFNGETG 174 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHH-HHhCCcchHHHhccccC
Confidence 4567778889999999999999999999 788 9999999875433
No 30
>PHA02337 putative high light inducible protein
Probab=97.81 E-value=1.3e-05 Score=52.27 Aligned_cols=28 Identities=36% Similarity=0.321 Sum_probs=24.6
Q ss_pred HHHhhhhHHHHHHHHHHHhhcccccCCcc
Q 025577 195 VKEIKNGRLALLAFVGFCVQQSAYPGTGP 223 (250)
Q Consensus 195 ~kELkNGRLAMlA~~G~~~q~~~~tG~gP 223 (250)
..|+-||||||++|...+.-+ +.||++.
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e-~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAY-ATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHH-HHhCCCC
Confidence 479999999999999999888 7889863
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.20 E-value=0.00021 Score=64.47 Aligned_cols=36 Identities=22% Similarity=0.425 Sum_probs=32.1
Q ss_pred hHHHhhhhHHHHHHHHHHHhhcccccCCcchhhhHhh
Q 025577 194 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATH 230 (250)
Q Consensus 194 k~kELkNGRLAMlA~~G~~~q~~~~tG~gPl~~l~~h 230 (250)
...|+-|||+|||||+..++-+ .+||++.+.|+...
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E-~~TG~gll~Qlg~f 195 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVD-SLTGVGLVDQMGNF 195 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHH-HHcCCcHHHHHhhh
Confidence 4589999999999999999999 78999999988753
No 32
>PHA02337 putative high light inducible protein
Probab=96.73 E-value=0.00085 Score=43.86 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=22.3
Q ss_pred HHHhhhhcchhhhhhhhcchhhhhhhhhcc
Q 025577 85 KESELIHCRWAMLAVVSSKFFWILVPEALG 114 (250)
Q Consensus 85 REAELkHGR~AMLAvvG~~~~~~lv~e~~~ 114 (250)
.+||..|||+||++++- .++.|.++
T Consensus 3 ~~aE~~NGRlAMiGfv~-----~~~~e~~t 27 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVA-----AVGAYATT 27 (35)
T ss_pred cHHHHHhhHHHHHHHHH-----HHHHHHHh
Confidence 46999999999999999 99988864
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=93.81 E-value=0.022 Score=51.63 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=24.1
Q ss_pred HHHHhhhhcchhhhhhhhcchhhhhhhhhccC
Q 025577 84 YKESELIHCRWAMLAVVSSKFFWILVPEALGL 115 (250)
Q Consensus 84 ~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~ 115 (250)
+.++|+.|||+||+|++- .++.|.++.
T Consensus 159 l~~aE~lNGR~AMiGFva-----al~~E~~TG 185 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFM-----AYLVDSLTG 185 (250)
T ss_pred CchhHhhhhHHHHHHHHH-----HHHHHHHcC
Confidence 568999999999999999 999998654
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=88.75 E-value=0.2 Score=43.92 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=28.3
Q ss_pred hhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhcc
Q 025577 78 PENLERYKESELIHCRWAMLAVVSSKFFWILVPEALG 114 (250)
Q Consensus 78 ~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~ 114 (250)
+++.+..+.-|+.+||+|||+++= .++.|.++
T Consensus 129 ~~~vrEqK~nE~~NGRLAMLGF~~-----alitE~lT 160 (214)
T PLN00084 129 DDQVREQKPYELFNGRLAMLGFAF-----AIAGDAVT 160 (214)
T ss_pred HHHHHhccchhhhhhHHHHHHHHH-----HHHHHHHh
Confidence 356777888999999999999999 99999976
No 35
>PHA00649 hypothetical protein
Probab=36.96 E-value=33 Score=26.08 Aligned_cols=25 Identities=40% Similarity=0.739 Sum_probs=18.9
Q ss_pred CChhhHhHHHHHhhhhcc-------hhhhhhhh
Q 025577 76 EVPENLERYKESELIHCR-------WAMLAVVS 101 (250)
Q Consensus 76 ~~~e~l~~~REAELkHGR-------~AMLAvvG 101 (250)
++|+..+.||| .+.||| -.||+++|
T Consensus 31 ~~P~~VEEFr~-D~~~~Rr~RKA~D~G~L~~VG 62 (83)
T PHA00649 31 DVPEQVEEFRE-DLRFGRRMRKAADHGFLALVG 62 (83)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHhhcchHHHHH
Confidence 46777777775 677877 36899999
No 36
>PLN02449 ferrochelatase
Probab=33.18 E-value=24 Score=35.41 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhcccccCCcchh
Q 025577 203 LALLAFVGFCVQQSAYPGTGPLE 225 (250)
Q Consensus 203 LAMlA~~G~~~q~~~~tG~gPl~ 225 (250)
+||+||+.+++-+ +++|+||+.
T Consensus 463 ~~~~~~~~~~~~~-~~~~~~~~~ 484 (485)
T PLN02449 463 AAMLAVLLLLVLE-VTSGFGNLH 484 (485)
T ss_pred hHHHHHHHHHHHH-HHcCCCcCC
Confidence 9999999999889 789999974
No 37
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.
Probab=24.62 E-value=8.3 Score=33.89 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=20.5
Q ss_pred cccchhhhcccccccccccCCCCCCCCCCCCCCCCCCCCcccCCCCCC
Q 025577 30 AVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77 (250)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~P~~~~P~~ldg~~pGd~GFDPLGLs~~ 77 (250)
....+|.+.+.+|.+..-.|+-+.=-|..-. -|=|||+|+++.
T Consensus 17 ~k~acAIVNT~~retGGvHWlA~Aw~P~s~t-----~YmFDPfGfsd~ 59 (183)
T PF00770_consen 17 HKPACAIVNTGGRETGGVHWLAFAWDPRSRT-----FYMFDPFGFSDQ 59 (183)
T ss_dssp TS-EEEEEESS-TTT--S-EEEEEEETTTTE-----EEEE-TT---HH
T ss_pred CCcceEEEecCCcccCceeEEEEEecCCcce-----EEEeCCCCCCHH
Confidence 3355677778888888888876543332211 234999999873
No 38
>PF06993 DUF1304: Protein of unknown function (DUF1304); InterPro: IPR009732 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=22.37 E-value=1.9e+02 Score=23.24 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCcCCCCCCCCCCCCCCh----hHHHHhhHHHhhhhHHHHHHHHHHHhhc
Q 025577 148 LVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDP----QKFEEYKVKEIKNGRLALLAFVGFCVQQ 215 (250)
Q Consensus 148 ~~~~~~~ig~~E~~r~~~~~~~~~~~PGd~FDPLgl~kd~----~~~~~~k~kELkNGRLAMlA~~G~~~q~ 215 (250)
.+++-+.|..+|...+......+ . +++++++ +...-.+.+-+-||=||...+.|.+...
T Consensus 4 vAl~H~~I~~LE~f~~~s~~~~k------~---F~~~~~~~~~~~~~~~a~NQGlYNgfLavgll~gl~~~~ 66 (113)
T PF06993_consen 4 VALEHLYIMYLEMFAWTSPRARK------T---FGMPPEFAKAPAVRPLAANQGLYNGFLAVGLLWGLFILN 66 (113)
T ss_pred HHHHHHHHHHHHHHHcCChhHHH------H---hCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45567888899998874321100 1 3343322 2222356789999999999999997766
Done!