Query 025577
Match_columns 250
No_of_seqs 202 out of 1183
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 13:09:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_1 AT3G54890, LHCA1; photo 100.0 3.5E-70 1.2E-74 488.2 9.9 240 1-247 1-241 (241)
2 3pl9_A Chlorophyll A-B binding 100.0 3.9E-62 1.3E-66 435.7 9.2 191 45-244 10-243 (243)
3 2bhw_A Chlorophyll A-B binding 100.0 1.3E-57 4.5E-62 405.3 16.4 192 45-243 20-225 (232)
4 2wsc_2 LHCA2, type II chloroph 100.0 6.6E-57 2.3E-61 407.9 2.8 187 45-246 63-269 (269)
5 2wsc_3 LHCA3, type II chloroph 100.0 1.3E-55 4.4E-60 400.7 5.6 188 45-245 55-275 (276)
6 2wsc_4 Chlorophyll A-B binding 100.0 5.6E-56 1.9E-60 398.7 3.0 181 46-245 53-250 (251)
7 2bhw_A Chlorophyll A-B binding 99.4 7.6E-14 2.6E-18 123.9 5.4 46 171-216 38-84 (232)
8 2wsc_4 Chlorophyll A-B binding 99.4 1.9E-14 6.5E-19 129.2 1.1 53 171-224 68-121 (251)
9 3pl9_A Chlorophyll A-B binding 99.4 1.1E-13 3.7E-18 123.6 3.7 49 61-115 171-219 (243)
10 2wsc_2 LHCA2, type II chloroph 99.4 3.8E-14 1.3E-18 128.3 0.0 52 171-223 79-131 (269)
11 2wsc_3 LHCA3, type II chloroph 99.4 9.9E-14 3.4E-18 126.0 1.8 52 59-115 199-250 (276)
12 2wsc_1 AT3G54890, LHCA1; photo 99.3 3.7E-13 1.3E-17 120.1 1.2 47 171-218 60-107 (241)
13 2dpr_A CON-T(K7GLA); conantoxi 48.7 9.2 0.00031 22.1 1.7 15 78-92 6-20 (26)
14 4ekf_A Adenain; alpha and beta 38.3 4.3 0.00015 34.9 -1.1 57 16-77 18-78 (204)
15 3nrt_A Putative ryanodine rece 23.3 35 0.0012 26.0 1.7 24 78-101 24-49 (103)
No 1
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=3.5e-70 Score=488.23 Aligned_cols=240 Identities=84% Similarity=1.411 Sum_probs=156.4
Q ss_pred Ccccchhhhhccccccccccccccccc-cccccchhhhcccccccccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChh
Q 025577 1 MASNTLMSCGIATTAFPSVLSSSKSKF-FTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE 79 (250)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~P~~~~P~~ldg~~pGd~GFDPLGLs~~~e 79 (250)
|||+.++||+++++ +++++++++++| ..+.+.+. .+.++|+++++.|+|+.++|+||||++|||+|||||||+++++
T Consensus 1 ~~~~~~~~~~~~a~-~p~~~~~~~~~~~~~~~~~~~-~~~~~~~sm~~~w~P~~~~P~~L~G~~pgd~gfDPlgl~~~~~ 78 (241)
T 2wsc_1 1 MASNSLMSCGIAAV-YPSLLSSSKSKFVSAGVPLPN-AGNVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPA 78 (241)
T ss_dssp --------------------------------------------------------------CTTSSCCCSSTTTTTTTT
T ss_pred CchHHHHHHHHHhc-CccccchhhhhhccccCcccc-cccccccccccccCCCCCCcccccCCCCCcCCcCccccCCCHH
Confidence 89999999999987 555555555555 66666664 3457899999999999999999999999999999999999999
Q ss_pred hHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccCCCccccccccccCCCcccccCCCCCCCchhHHHHHHHHHHHHHH
Q 025577 80 NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVE 159 (250)
Q Consensus 80 ~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~~~~~~a~~~~~~p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E 159 (250)
+++||||+|||||||||||++| +++||.++.++|.++.+|.+++++.+.|.+++++|+.+++++++|+++||++|
T Consensus 79 ~~~~~r~~El~hgR~AMla~~G-----~~~~e~~~~~~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E 153 (241)
T 2wsc_1 79 NLERYKESELIHCRWAMLAVPG-----ILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVE 153 (241)
T ss_dssp HHHHSHHHHHHHHHHHTTTSTT-----SSSTTCCCCC-----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhhchhHHhhhhc-----ccchhhccCCccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 99999999888988888888899888888888889889999999999999999
Q ss_pred HhhhcccCCCCCcCCCCCCCCCCCCCChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccccCCcchhhhHhhhcCcccccc
Q 025577 160 HQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239 (250)
Q Consensus 160 ~~r~~~~~~~~~~~PGd~FDPLgl~kd~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gPl~~l~~hl~~P~~~ni 239 (250)
.+|..++++.++.||||.|||||+.+|+++++++|++|||||||||+|++|+++|+..+||+||++||.+|++|||||||
T Consensus 154 ~~r~~~~~~~~~~yPgg~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~ 233 (241)
T 2wsc_1 154 HQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233 (241)
T ss_dssp HHHTSCCSSCCSSSCSCCSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC---
T ss_pred HHHHhccCCCCCCCCCCcccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccce
Confidence 99988777667789999999999999999999999999999999999999999999558999999999999999999999
Q ss_pred ccccccCC
Q 025577 240 GDVIIPRG 247 (250)
Q Consensus 240 ~~~~~~~~ 247 (250)
.++++|++
T Consensus 234 ~~~~~~~~ 241 (241)
T 2wsc_1 234 GDIVIPFN 241 (241)
T ss_dssp --------
T ss_pred eeeeccCC
Confidence 99999874
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=3.9e-62 Score=435.71 Aligned_cols=191 Identities=48% Similarity=0.871 Sum_probs=134.2
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChh-------------------------------------------hH
Q 025577 45 MSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE-------------------------------------------NL 81 (250)
Q Consensus 45 ~~~~~~P~~~~P~~ldg~~pGd~GFDPLGLs~~~e-------------------------------------------~l 81 (250)
.+..|+|+..+|+||||++|||||||||||+++|| ++
T Consensus 10 ~r~~w~pg~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 89 (243)
T 3pl9_A 10 DRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFGL 89 (243)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ccccccCCCCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccchhhh
Confidence 56789999999999999999999999999999886 37
Q ss_pred hHHHHHhhhhcchhhhhhhhcchhhhhhhhhccCCCccccccccccCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHh
Q 025577 82 ERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQ 161 (250)
Q Consensus 82 ~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~~~~~~a~~~~~~p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~ 161 (250)
+||||+|||||||||||++| +++||+++...|+++.... +.++ ..|.+++.++ .++.++++|+++||++|.+
T Consensus 90 ~r~ReaELkHGRwAMLAvlG-----~lvpE~l~g~~W~~aG~~~-~~~g-~~y~g~p~~~-~i~~l~~~qv~lmG~~E~~ 161 (243)
T 3pl9_A 90 QRFRECELIHGRWAMLATLG-----ALTVEGLTGITWQDAGKVE-LIEG-SSYLGQPLPF-SMTTLIWIEVLVIGYIEFQ 161 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHSCCTTTHHHHH-HHSC-EEETTEEECC-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhcchhHHHHHHH-----HHhHHhhcCcccccccccc-cccc-cccccCccch-hhHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999 9999998766687654321 1122 3455555443 4778889999999999999
Q ss_pred hhcccCCCCCcCCCCCCCCCCCCCChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccccCCcchhhhHhhhcCcccccccc
Q 025577 162 RSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 241 (250)
Q Consensus 162 r~~~~~~~~~~~PGd~FDPLgl~kd~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gPl~~l~~hl~~P~~~ni~~ 241 (250)
|+++.++++..||||.|||||+.+|+++++++|++|||||||||+|++|+++|+ ++||+||++||.+|++||+||||++
T Consensus 162 R~~~~~~~~~~~PG~~FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~-~vtG~Gpl~~l~~HladP~~~ni~~ 240 (243)
T 3pl9_A 162 RNAELDTEKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQA-AVTGKGPLNNWVTHLSDPLHTTILD 240 (243)
T ss_dssp HHSCCCTTTTTCCCGGGCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHSSCHHHHHHHHHHCSGGGSTTT
T ss_pred hhcccCCccccCCCcchhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH-HhcCCChHHHHHHHhcCcchhhhhh
Confidence 998766666689999999999999999999999999999999999999999999 7999999999999999999999998
Q ss_pred ccc
Q 025577 242 VII 244 (250)
Q Consensus 242 ~~~ 244 (250)
+++
T Consensus 241 ~~~ 243 (243)
T 3pl9_A 241 RFL 243 (243)
T ss_dssp TTC
T ss_pred hcC
Confidence 764
No 3
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=1.3e-57 Score=405.35 Aligned_cols=192 Identities=40% Similarity=0.704 Sum_probs=158.8
Q ss_pred ccccCCCC--CCCCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccCCC-----
Q 025577 45 MSADWMPG--EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGN----- 117 (250)
Q Consensus 45 ~~~~~~P~--~~~P~~ldg~~pGd~GFDPLGLs~~~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~~~----- 117 (250)
.+..|+|+ .++|+||||++|||+|||||||++++++++||||+|||||||||||++| +++||+++..+
T Consensus 20 ~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G-----~lv~E~l~~~G~~~~~ 94 (232)
T 2bhw_A 20 DRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALG-----SVFPELLSRNGVKFGE 94 (232)
T ss_dssp TCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHTTTCCCSC
T ss_pred CcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhh-----hhhHHHhccCCcCCcc
Confidence 34668875 3799999999999999999999999999999999999999999999999 99999876422
Q ss_pred --ccccccccccCCCcccccCCCC--CCCchhHHHHHHHHHHHHHHHhhhcccC---CCCCcCCCCCCCCCCCCCChhHH
Q 025577 118 --WVQAQEWAAVPGGQATYLGTPV--PWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGAFDPLGFSKDPQKF 190 (250)
Q Consensus 118 --~~~a~~~~~~p~g~~~~~~~p~--~~~~~p~~~~~~~~~ig~~E~~r~~~~~---~~~~~~PGd~FDPLgl~kd~~~~ 190 (250)
|+++.. ..+..+...|.++|. .++.+..++++|+++||++|.+|+.+.. ..+..||||.|||||+.+|++++
T Consensus 95 ~~w~~ag~-~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~~~~~~~ 173 (232)
T 2bhw_A 95 AVWFKAGS-QIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 173 (232)
T ss_dssp CSGGGSGG-GGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEETTEECSSSSCCCTTSCTTCTTCSHHHH
T ss_pred cccccccc-hhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccCCCcccccchhccchHHH
Confidence 333221 111222234555553 2345667888999999999999886522 12356999999999999999999
Q ss_pred HHhhHHHhhhhHHHHHHHHHHHhhcccccCCcchhhhHhhhcCcccccccccc
Q 025577 191 EEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 243 (250)
Q Consensus 191 ~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gPl~~l~~hl~~P~~~ni~~~~ 243 (250)
+++|++|||||||||+|++|+++|+ .+||++|++||.+|++||||+||.++.
T Consensus 174 ~~~~~~E~~nGRlAM~~~~g~~~~~-~~tg~g~~~~l~~~~adP~~~n~~~~~ 225 (232)
T 2bhw_A 174 AELKVKELKNGRLAMFSMFGFFVQA-IVTGKGPLENLADHLADPVNNNAWSYA 225 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHCSCSHHHHHHHHHCTTTSSGGGGT
T ss_pred HHHHHhhhhccchHHHHHHHHHHHH-HhcCCChHHHHHHHhcChHHhHHHHHH
Confidence 9999999999999999999999999 799999999999999999999999853
No 4
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=6.6e-57 Score=407.90 Aligned_cols=187 Identities=45% Similarity=0.838 Sum_probs=126.8
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccCCCccccccc
Q 025577 45 MSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEW 124 (250)
Q Consensus 45 ~~~~~~P~~~~P~~ldg~~pGd~GFDPLGLs~~~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~~~~~~a~~~ 124 (250)
.++.|+|+.++|+||||++|||+|||||||++|+++++||||+|||||||||||++| +++||+++..+......|
T Consensus 63 ~r~~wlpg~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G-----~l~~E~l~~~G~~~~p~w 137 (269)
T 2wsc_2 63 DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAG-----IFIPEFLTKLGILNTPSW 137 (269)
T ss_dssp -------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHH-----HHHHHHHCCTTSSSCCCC
T ss_pred CcccccCCCCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHH-----hHhHHhhccCCcccCccc
Confidence 457799999999999999999999999999999999999999999999999999999 999999875444333334
Q ss_pred cccCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhccc----C-------------CCCCcCCCC-CCCCCCCCC-
Q 025577 125 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK----D-------------PEKKKYPGG-AFDPLGFSK- 185 (250)
Q Consensus 125 ~~~p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~~----~-------------~~~~~~PGd-~FDPLgl~k- 185 (250)
.+ .+...|. ...+.++++|+++||++|.+|+++. . ..+..|||| +|||||+.+
T Consensus 138 ~~--aG~~~~~------~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~~~fDPlgl~~~ 209 (269)
T 2wsc_2 138 YT--AGEQEYF------TDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSA 209 (269)
T ss_dssp CS--TTSSSSC------CCTTSHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTCSSCCCSSSSSS
T ss_pred cc--cchhhhh------cchHHHHHHHHHHHHHHHHHHHhccccCCccccccccccccccccccCCCCCcccCccccCcc
Confidence 32 2222222 2234567788899999999987531 0 113479999 699999975
Q ss_pred ChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccccCCcchhhhH-hhhcCccccccccccccC
Q 025577 186 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA-THLADPWHNNIGDVIIPR 246 (250)
Q Consensus 186 d~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gPl~~l~-~hl~~P~~~ni~~~~~~~ 246 (250)
|+++++++|++|||||||||+|++|+++|+ .+||++|++||. +|++|| ||||++++.++
T Consensus 210 ~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~-~~tg~g~l~~l~~~HladP-~~n~~~~~~~~ 269 (269)
T 2wsc_2 210 SPQKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAAHLADP-HATIFAAFTPK 269 (269)
T ss_dssp CCCSCTTSTTTTHHHHHHHHTTTSSSCHHH-HHTTTCSSCCCSCCCCCCS-CCCCCSSSCCC
T ss_pred cHHHHHHHHHhhcccchHHHHHHHHHHHHH-HhcCCChHHHHHHHHhcCc-ccchhhhccCC
Confidence 788899999999999999999999999999 799999999999 999999 99999988763
No 5
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=1.3e-55 Score=400.67 Aligned_cols=188 Identities=41% Similarity=0.743 Sum_probs=102.4
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhhH------hHHHHHhhhhcchhhhhhhhcchhhhhhhhhccCCCc
Q 025577 45 MSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENL------ERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNW 118 (250)
Q Consensus 45 ~~~~~~P~~~~P~~ldg~~pGd~GFDPLGLs~~~e~l------~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~~~~ 118 (250)
.+..|+|+.++|+||||++|||+||||||| ++++++ +||||+|||||||||||++| ++++|+++..+.
T Consensus 55 ~R~~wlP~~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G-----~l~~E~~~~~g~ 128 (276)
T 2wsc_3 55 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVG-----AIAPEILGKAGL 128 (276)
T ss_dssp -------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTS-----TTSCSSCSSCCC
T ss_pred CccccCCCCCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHH-----HHHHHHhccccc
Confidence 446799999999999999999999999999 567888 99999999999999999999 999999875433
Q ss_pred c--ccc-cccc---cC-CCcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhccc----C---------------CCCCc
Q 025577 119 V--QAQ-EWAA---VP-GGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK----D---------------PEKKK 172 (250)
Q Consensus 119 ~--~a~-~~~~---~p-~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~~----~---------------~~~~~ 172 (250)
. +.. .|.+ +| .+...|. +..+.++++|+++||++|.+|+++. + ..+..
T Consensus 129 ~~~~~p~~w~~~g~ip~aG~~~~~------~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~~~d~~ 202 (276)
T 2wsc_3 129 IPQETALPWFRTGFIPPAGTYNYW------ADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPA 202 (276)
T ss_dssp CCCSSCCSSSSCCCC-----CCCS------CCCCSTTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCCCCCSSCT
T ss_pred ccccCcchhhhhhcccchhHHHHh------ccchHHHHHHHHHHHHHHHhhhcccccCCccccccccccccccccccccc
Confidence 2 111 1422 22 1222232 2233456788899999999886531 0 11346
Q ss_pred CCCC-CCCCCCCCCChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccccCCcchhhhHhhhcCcccccccccccc
Q 025577 173 YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 245 (250)
Q Consensus 173 ~PGd-~FDPLgl~kd~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gPl~~l~~hl~~P~~~ni~~~~~~ 245 (250)
|||| +|||||+.+|+++++++|++|||||||||+|++|+++|+ .+||++|++||.+|++|||||||.+++.+
T Consensus 203 yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~-~~tg~g~~~~l~~HladP~~~n~~~~~~~ 275 (276)
T 2wsc_3 203 YPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQA-LVTGVGPYQNLLDHLTDPVHNNILTSLKF 275 (276)
T ss_dssp TTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSC-CCCSSCCSCC-------------------
T ss_pred CCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHH-HhcCCChHHHHHHhccCcccchhhhhccC
Confidence 9999 799999999888899999999999999999999999999 79999999999999999999999998764
No 6
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=5.6e-56 Score=398.70 Aligned_cols=181 Identities=45% Similarity=0.854 Sum_probs=121.2
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccCCCcccccccc
Q 025577 46 SADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWA 125 (250)
Q Consensus 46 ~~~~~P~~~~P~~ldg~~pGd~GFDPLGLs~~~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~~~~~~a~~~~ 125 (250)
++.|+|+.+.|+||||++|||+|||||||++++++++||||+|||||||||||++| ++++|+++..+....+.|.
T Consensus 53 r~~~~pg~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G-----~~~~e~~~~~g~~~~p~w~ 127 (251)
T 2wsc_4 53 KGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAG-----MLLPEVFTSIGIINVPKWY 127 (251)
T ss_dssp ----------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTT-----SSTTSSSCCSCSSCCCCCS
T ss_pred hhhccCCCCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHH-----HHHHHHhcCCCccCCcccc
Confidence 67799999999999999999999999999999999999999999999999999999 9999998765444333343
Q ss_pred ccCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhccc----C----C---------CCCcCCCCCCCCCCCCCChh
Q 025577 126 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK----D----P---------EKKKYPGGAFDPLGFSKDPQ 188 (250)
Q Consensus 126 ~~p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~~----~----~---------~~~~~PGd~FDPLgl~kd~~ 188 (250)
+ .+...|..+ .+.++++|+++||++|.+|+.+. + + .+..||||.|||||+.+
T Consensus 128 ~--aG~~~~~~~------~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~yPGg~FDPLgl~~--- 196 (251)
T 2wsc_4 128 A--AGKEEYFAS------SSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAP--- 196 (251)
T ss_dssp C--CCSSSCSSC------SSCTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHHSSCCTTCCCCCCS---
T ss_pred c--cchHhhhcc------chHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccccccCCCCccCccchhH---
Confidence 2 233334332 23445678889999999887541 1 0 02369999999999976
Q ss_pred HHHHhhHHHhhhhHHHHHHHHHHHhhcccccCCcchhhhHhhhcCcccccccccccc
Q 025577 189 KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 245 (250)
Q Consensus 189 ~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gPl~~l~~hl~~P~~~ni~~~~~~ 245 (250)
++++|+|||||||| |+||+||++|+ .+||++|++||.+|++|||||||++++..
T Consensus 197 -~~~~k~kELkNGRL-MlAilGf~vQe-~vTG~gPl~nL~~hladP~~~n~~~~~~~ 250 (251)
T 2wsc_4 197 -TLEAKEKEIANGRL-MLAFLGFIIQH-NVTGKGPFDNLLQHISDPWHNTIVQTLGG 250 (251)
T ss_dssp -SSSCTTHHHHHHHT-TTTHHHHHHHH-TTSCCCCCCCTTTTTTCCCCCCSCC----
T ss_pred -HHHHHHHHHhcchh-HHHHHHHHHHH-HhcCccHHHHHHHHccChhhhhhhhhhcC
Confidence 67899999999999 99999999999 79999999999999999999999997653
No 7
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.43 E-value=7.6e-14 Score=123.92 Aligned_cols=46 Identities=28% Similarity=0.581 Sum_probs=43.8
Q ss_pred CcCCCC-CCCCCCCCCChhHHHHhhHHHhhhhHHHHHHHHHHHhhcc
Q 025577 171 KKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQS 216 (250)
Q Consensus 171 ~~~PGd-~FDPLgl~kd~~~~~~~k~kELkNGRLAMlA~~G~~~q~~ 216 (250)
+.+||| +||||||++|+++++++|..||||||+||+|++|+++||.
T Consensus 38 G~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~ 84 (232)
T 2bhw_A 38 GEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPEL 84 (232)
T ss_dssp SCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHH
Confidence 568999 9999999999999999999999999999999999999993
No 8
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.42 E-value=1.9e-14 Score=129.15 Aligned_cols=53 Identities=32% Similarity=0.713 Sum_probs=38.4
Q ss_pred CcCCCC-CCCCCCCCCChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccccCCcch
Q 025577 171 KKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 224 (250)
Q Consensus 171 ~~~PGd-~FDPLgl~kd~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gPl 224 (250)
+.+||| +||||||++|+++++++|.+||||||+||+|++|+++|| ++++.+++
T Consensus 68 g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e-~~~~~g~~ 121 (251)
T 2wsc_4 68 GSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPE-VFTSIGII 121 (251)
T ss_dssp -------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTS-SSCCSCSS
T ss_pred CCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHH-HhcCCCcc
Confidence 358999 899999999999999999999999999999999999999 68887765
No 9
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.39 E-value=1.1e-13 Score=123.60 Aligned_cols=49 Identities=33% Similarity=0.447 Sum_probs=45.9
Q ss_pred CCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccC
Q 025577 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115 (250)
Q Consensus 61 g~~pGd~GFDPLGLs~~~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~ 115 (250)
..+|||+ ||||||++++++++++|++||||||+||+|++| ++++|.++.
T Consensus 171 ~~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g-----~~~q~~vtG 219 (243)
T 3pl9_A 171 RLYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLG-----FAVQAAVTG 219 (243)
T ss_dssp TTCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHS
T ss_pred ccCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHH-----HHHHHHhcC
Confidence 3589999 999999999999999999999999999999999 999999754
No 10
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.38 E-value=3.8e-14 Score=128.27 Aligned_cols=52 Identities=29% Similarity=0.526 Sum_probs=34.4
Q ss_pred CcCCCC-CCCCCCCCCChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccccCCcc
Q 025577 171 KKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 223 (250)
Q Consensus 171 ~~~PGd-~FDPLgl~kd~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gP 223 (250)
+.+||| +||||||++|+++++++|.+||||||+||+|++|+++|+ ++++.+.
T Consensus 79 G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E-~l~~~G~ 131 (269)
T 2wsc_2 79 GSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPE-FLTKLGI 131 (269)
T ss_dssp ---------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHH-HHCCTTS
T ss_pred CcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHH-hhccCCc
Confidence 357999 899999999999999999999999999999999999999 5665543
No 11
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.36 E-value=9.9e-14 Score=125.96 Aligned_cols=52 Identities=29% Similarity=0.380 Sum_probs=43.1
Q ss_pred CCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccC
Q 025577 59 LDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGL 115 (250)
Q Consensus 59 ldg~~pGd~GFDPLGLs~~~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~ 115 (250)
.|..+|||++||||||++++++++++|++||||||+||||++| ++++|.++.
T Consensus 199 ~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g-----~~~~~~~tg 250 (276)
T 2wsc_3 199 GEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILG-----YFVQALVTG 250 (276)
T ss_dssp SSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHH-----HHSSCCCCS
T ss_pred ccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHH-----HHHHHHhcC
Confidence 4567999999999999988888999999999999999999999 999999764
No 12
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.29 E-value=3.7e-13 Score=120.12 Aligned_cols=47 Identities=40% Similarity=0.684 Sum_probs=43.5
Q ss_pred CcCCCC-CCCCCCCCCChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccc
Q 025577 171 KKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 218 (250)
Q Consensus 171 ~~~PGd-~FDPLgl~kd~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~ 218 (250)
+.+||| +|||||+++|+++++++|..||||||+||+|++|+++|+ ++
T Consensus 60 G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e-~~ 107 (241)
T 2wsc_1 60 GSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPE-AL 107 (241)
T ss_dssp -CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTT-CC
T ss_pred CCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchh-hc
Confidence 457999 899999999999999999999999999999999999999 44
No 13
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=48.73 E-value=9.2 Score=22.14 Aligned_cols=15 Identities=33% Similarity=0.415 Sum_probs=12.3
Q ss_pred hhhHhHHHHHhhhhc
Q 025577 78 PENLERYKESELIHC 92 (250)
Q Consensus 78 ~e~l~~~REAELkHG 92 (250)
++-++.+||||+|.-
T Consensus 6 qemlenlreaevkkn 20 (26)
T 2dpr_A 6 QEMLENLREAEVKKN 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 567889999999864
No 14
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=38.34 E-value=4.3 Score=34.92 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=35.6
Q ss_pred cccccccccccccc----cccchhhhcccccccccccCCCCCCCCCCCCCCCCCCCCcccCCCCCC
Q 025577 16 FPSVLSSSKSKFFT----AVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77 (250)
Q Consensus 16 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~P~~~~P~~ldg~~pGd~GFDPLGLs~~ 77 (250)
.+.||+-=+.+|.+ ....+|.+.+.+|.+..-.|+-+.=-|..-. -|=|||+|+++.
T Consensus 18 ~~~FLGtFDkrFPGFl~~~k~a~AIVNTg~retGGvHWiA~Aw~P~s~~-----~YmFDPfG~sd~ 78 (204)
T 4ekf_A 18 GPYFLGTYDKRFPGFVSPHKLACAIVNTAGRETGGVHWMAFAWNPRSKT-----CYLFEPFGFSDQ 78 (204)
T ss_dssp GGGEEEEEESSCCSCCCTTSCEEEEEESCC----CCCEEEEEEETTTTE-----EEEECTBTTCSH
T ss_pred CCcccccccCCCCCccCCCCcceeEEecCCcccCceeEEEeEecCCcce-----EEEeCCCCCCHH
Confidence 46677777777755 4466677888889988888886543343211 234999999984
No 15
>3nrt_A Putative ryanodine receptor; PSI-2, protein structure initiative, structural genomics, MI center for structural genomics (MCSG); 2.54A {Bacteroides thetaiotaomicron}
Probab=23.31 E-value=35 Score=26.04 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=15.9
Q ss_pred hhhHhHHH--HHhhhhcchhhhhhhh
Q 025577 78 PENLERYK--ESELIHCRWAMLAVVS 101 (250)
Q Consensus 78 ~e~l~~~R--EAELkHGR~AMLAvvG 101 (250)
+..++..+ =||..|.||||==..-
T Consensus 24 ~~~le~lvE~LAen~H~~Wa~~r~~~ 49 (103)
T 3nrt_A 24 PESLIQLSERIAENVHEVWAKARIDE 49 (103)
T ss_dssp CHHHHTTHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44454333 3799999999866543
Done!