Query 025578
Match_columns 250
No_of_seqs 186 out of 1325
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:16:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1546 Metacaspase involved i 100.0 1.3E-42 2.8E-47 304.4 20.0 211 39-249 58-315 (362)
2 PF00656 Peptidase_C14: Caspas 100.0 3E-32 6.5E-37 235.8 10.6 191 45-249 1-200 (248)
3 cd00032 CASc Caspase, interleu 99.7 1.2E-16 2.5E-21 139.7 18.6 178 43-249 8-194 (243)
4 smart00115 CASc Caspase, inter 99.7 6.2E-16 1.3E-20 134.9 19.2 177 42-249 6-190 (241)
5 COG4249 Uncharacterized protei 99.6 1.6E-14 3.4E-19 133.1 10.4 131 99-248 113-252 (380)
6 PF01650 Peptidase_C13: Peptid 99.5 1E-13 2.2E-18 121.9 13.3 150 45-237 1-188 (256)
7 KOG1348 Asparaginyl peptidases 98.7 5E-07 1.1E-11 81.7 14.1 130 41-192 42-213 (477)
8 KOG1349 Gpi-anchor transamidas 98.6 3.6E-07 7.7E-12 79.0 10.9 164 42-250 26-240 (309)
9 PF14538 Raptor_N: Raptor N-te 98.4 2.7E-06 5.9E-11 69.4 10.1 105 65-192 43-151 (154)
10 COG5206 GPI8 Glycosylphosphati 98.2 2.8E-05 6.1E-10 67.9 12.3 165 41-250 25-240 (382)
11 PF12770 CHAT: CHAT domain 97.3 0.0027 5.8E-08 55.9 10.7 113 48-190 82-203 (287)
12 KOG1517 Guanine nucleotide bin 96.9 0.0044 9.6E-08 63.2 8.6 129 100-245 168-305 (1387)
13 COG4249 Uncharacterized protei 96.8 0.00033 7.2E-09 65.0 0.3 170 43-248 2-181 (380)
14 COG4995 Uncharacterized protei 85.7 3 6.6E-05 39.4 7.3 117 42-190 210-333 (420)
15 COG2379 GckA Putative glycerat 82.4 8.9 0.00019 35.9 8.6 80 42-133 35-126 (422)
16 PF12070 DUF3550: Protein of u 81.2 9.6 0.00021 37.0 8.7 36 98-133 292-327 (513)
17 KOG1321 Protoheme ferro-lyase 74.2 16 0.00034 33.4 7.5 61 67-134 174-240 (395)
18 COG1791 Uncharacterized conser 73.9 19 0.00041 29.9 7.3 58 68-133 52-109 (181)
19 PF03415 Peptidase_C11: Clostr 72.1 14 0.0003 34.7 7.1 82 99-190 77-160 (397)
20 COG0648 Nfo Endonuclease IV [D 71.3 14 0.0003 33.2 6.5 64 101-190 119-182 (280)
21 PF13660 DUF4147: Domain of un 63.3 20 0.00043 31.4 5.7 75 43-133 39-130 (238)
22 PLN02450 1-aminocyclopropane-1 62.1 41 0.00088 32.1 8.2 35 155-191 203-238 (468)
23 PLN02994 1-aminocyclopropane-1 55.8 34 0.00074 27.6 5.6 50 63-124 93-146 (153)
24 COG2830 Uncharacterized protei 55.7 10 0.00023 31.4 2.5 37 117-154 8-45 (214)
25 PF06258 Mito_fiss_Elm1: Mitoc 55.3 72 0.0016 28.9 8.2 73 42-130 145-218 (311)
26 PF10264 Stork_head: Winged he 52.0 51 0.0011 23.9 5.3 28 100-133 49-76 (80)
27 PRK09440 avtA valine--pyruvate 51.8 1.4E+02 0.003 27.6 9.8 51 69-128 81-139 (416)
28 PF02698 DUF218: DUF218 domain 49.4 68 0.0015 25.1 6.4 43 64-113 52-94 (155)
29 PF09827 CRISPR_Cas2: CRISPR a 49.2 56 0.0012 22.8 5.3 51 66-126 14-66 (78)
30 PF13768 VWA_3: von Willebrand 47.7 54 0.0012 25.6 5.6 46 85-132 2-47 (155)
31 COG0079 HisC Histidinol-phosph 44.0 2E+02 0.0043 26.5 9.3 110 63-187 54-187 (356)
32 KOG3425 Uncharacterized conser 41.3 35 0.00076 26.8 3.3 24 105-128 11-34 (128)
33 PRK10886 DnaA initiator-associ 40.0 1E+02 0.0023 25.9 6.3 77 42-131 39-121 (196)
34 COG0657 Aes Esterase/lipase [L 39.7 1.6E+02 0.0035 25.9 7.9 47 46-92 110-160 (312)
35 PF01878 EVE: EVE domain; Int 38.3 25 0.00055 27.6 2.2 17 112-128 36-52 (143)
36 cd00615 Orn_deC_like Ornithine 37.9 2.8E+02 0.006 24.3 9.4 61 58-131 51-111 (294)
37 cd00609 AAT_like Aspartate ami 36.8 1.8E+02 0.0039 25.3 7.8 58 62-131 36-95 (350)
38 cd06259 YdcF-like YdcF-like. Y 36.7 1.1E+02 0.0024 23.7 5.8 44 65-115 50-93 (150)
39 PF01364 Peptidase_C25: Peptid 36.5 61 0.0013 29.8 4.8 15 178-192 273-287 (378)
40 PRK00809 hypothetical protein; 35.9 36 0.00077 27.3 2.7 21 112-132 31-52 (144)
41 PRK09814 beta-1,6-galactofuran 34.6 1.1E+02 0.0025 27.3 6.2 55 68-129 21-75 (333)
42 PLN00143 tyrosine/nicotianamin 34.3 1.7E+02 0.0037 27.1 7.4 34 155-190 182-216 (409)
43 PTZ00377 alanine aminotransfer 34.2 1.7E+02 0.0036 27.9 7.5 45 69-124 122-168 (481)
44 PRK03670 competence damage-ind 33.2 1.9E+02 0.0042 25.3 7.2 55 68-135 22-76 (252)
45 PRK06107 aspartate aminotransf 32.6 2.3E+02 0.0051 26.0 8.1 45 69-125 77-123 (402)
46 PF08541 ACP_syn_III_C: 3-Oxoa 32.5 79 0.0017 22.4 3.9 56 74-133 26-83 (90)
47 PRK08361 aspartate aminotransf 32.1 3.9E+02 0.0085 24.3 9.5 50 69-130 77-128 (391)
48 PF03568 Peptidase_C50: Peptid 31.9 87 0.0019 29.2 5.0 15 179-193 337-351 (383)
49 cd01612 APG12_C Ubiquitin-like 31.6 2E+02 0.0044 20.9 6.8 53 68-128 28-82 (87)
50 PRK05942 aspartate aminotransf 30.8 3.3E+02 0.0071 24.9 8.7 47 69-126 80-128 (394)
51 PF00994 MoCF_biosynth: Probab 30.0 1.7E+02 0.0038 22.7 5.8 52 66-131 17-68 (144)
52 COG1350 Predicted alternative 29.7 65 0.0014 29.9 3.6 34 101-134 384-419 (432)
53 PF07859 Abhydrolase_3: alpha/ 29.6 71 0.0015 26.0 3.7 46 47-92 30-79 (211)
54 TIGR01573 cas2 CRISPR-associat 29.3 2.1E+02 0.0046 20.9 5.8 56 65-128 15-71 (95)
55 TIGR03576 pyridox_MJ0158 pyrid 29.2 1.4E+02 0.0031 27.1 5.9 48 66-125 54-101 (346)
56 PLN02651 cysteine desulfurase 29.0 2.2E+02 0.0048 25.7 7.1 55 68-131 45-100 (364)
57 COG0279 GmhA Phosphoheptose is 28.9 1.8E+02 0.0039 24.2 5.7 29 42-79 39-67 (176)
58 cd00758 MoCF_BD MoCF_BD: molyb 28.4 1.9E+02 0.004 22.3 5.7 44 68-124 21-64 (133)
59 PRK10264 hydrogenase 1 maturat 28.0 2.9E+02 0.0063 23.2 7.1 43 44-92 3-45 (195)
60 COG2194 Predicted membrane-ass 28.0 76 0.0017 31.3 4.0 15 120-134 445-459 (555)
61 TIGR00263 trpB tryptophan synt 27.8 2.2E+02 0.0047 26.5 6.9 32 102-134 347-378 (385)
62 TIGR03402 FeS_nifS cysteine de 27.6 2.9E+02 0.0064 24.9 7.7 56 66-130 42-97 (379)
63 PRK06108 aspartate aminotransf 27.3 3.8E+02 0.0083 24.0 8.4 52 66-129 65-118 (382)
64 cd06446 Trp-synth_B Tryptophan 26.5 2.3E+02 0.005 26.0 6.8 33 101-134 330-362 (365)
65 PRK11557 putative DNA-binding 26.4 3.9E+02 0.0085 23.1 8.0 14 173-186 200-213 (278)
66 PF08357 SEFIR: SEFIR domain; 26.0 98 0.0021 24.2 3.7 50 66-127 16-67 (150)
67 TIGR00177 molyb_syn molybdenum 25.5 2.4E+02 0.0052 22.1 5.9 45 68-125 29-73 (144)
68 cd00886 MogA_MoaB MogA_MoaB fa 25.3 3.4E+02 0.0074 21.4 7.6 44 70-124 24-67 (152)
69 KOG1552 Predicted alpha/beta h 25.2 1.3E+02 0.0027 26.7 4.5 25 63-88 110-134 (258)
70 COG0436 Aspartate/tyrosine/aro 24.3 2.1E+02 0.0046 26.6 6.2 109 69-193 72-212 (393)
71 COG2179 Predicted hydrolase of 24.1 1E+02 0.0023 25.6 3.5 34 144-181 35-68 (175)
72 PRK14012 cysteine desulfurase; 23.9 4.1E+02 0.0089 24.3 8.0 53 68-129 51-104 (404)
73 PF07736 CM_1: Chorismate muta 23.5 1.2E+02 0.0025 23.7 3.5 33 101-133 14-52 (118)
74 PRK01215 competence damage-ind 23.4 2.9E+02 0.0063 24.4 6.6 54 67-134 24-77 (264)
75 PRK05166 histidinol-phosphate 23.3 2.3E+02 0.005 25.6 6.2 47 70-128 75-121 (371)
76 COG1058 CinA Predicted nucleot 23.2 2.3E+02 0.005 25.0 5.8 55 66-134 21-75 (255)
77 PLN02618 tryptophan synthase, 23.0 2.9E+02 0.0063 26.1 6.8 26 109-134 374-399 (410)
78 PRK07591 threonine synthase; V 22.9 2.7E+02 0.0058 26.2 6.6 35 101-135 359-395 (421)
79 PRK09105 putative aminotransfe 22.7 2.2E+02 0.0047 26.0 5.9 50 67-128 79-128 (370)
80 PRK09428 pssA phosphatidylseri 22.7 4.9E+02 0.011 24.9 8.3 68 79-184 20-89 (451)
81 COG2947 Uncharacterized conser 22.4 80 0.0017 25.5 2.5 18 111-128 37-54 (156)
82 TIGR01415 trpB_rel pyridoxal-p 22.2 2.7E+02 0.0058 26.4 6.5 33 101-134 374-409 (419)
83 PF00220 Hormone_4: Neurohypop 21.9 42 0.00092 14.2 0.4 6 2-7 4-9 (9)
84 PF00266 Aminotran_5: Aminotra 21.8 3E+02 0.0065 24.8 6.6 55 70-133 47-102 (371)
85 PRK07116 flavodoxin; Provision 21.7 56 0.0012 26.1 1.6 14 120-133 4-17 (160)
86 TIGR03676 aRF1/eRF1 peptide ch 21.7 6E+02 0.013 23.9 8.7 57 67-134 32-92 (403)
87 cd08588 PI-PLCc_At5g67130_like 21.5 4.9E+02 0.011 23.0 7.6 80 100-187 76-160 (270)
88 PF13709 DUF4159: Domain of un 21.3 1.6E+02 0.0034 25.0 4.3 19 65-83 18-36 (207)
89 smart00852 MoCF_biosynth Proba 21.3 3.4E+02 0.0073 20.8 5.9 49 68-130 20-68 (135)
90 TIGR03378 glycerol3P_GlpB glyc 21.0 3.7E+02 0.0079 25.6 7.0 30 44-82 138-168 (419)
91 PRK07324 transaminase; Validat 20.7 3.7E+02 0.0081 24.4 7.0 48 70-129 66-114 (373)
92 PRK06260 threonine synthase; V 20.7 3.1E+02 0.0067 25.5 6.5 35 100-134 335-371 (397)
93 PRK05569 flavodoxin; Provision 20.3 64 0.0014 24.9 1.6 14 120-133 3-16 (141)
94 PF06720 Phi-29_GP16_7: Bacter 20.0 35 0.00075 26.3 0.0 14 121-134 13-26 (130)
No 1
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-42 Score=304.36 Aligned_cols=211 Identities=44% Similarity=0.735 Sum_probs=177.7
Q ss_pred CCCCCCeEEEEEeecCCCCCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCC
Q 025578 39 SSSRPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRK 118 (250)
Q Consensus 39 ~~~~~~~~ALlIGi~Y~~~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~ 118 (250)
+...++|+||||||||.++..+|+||+|||..|+++|.++|||+.++|.+|+|.+++....||++||+++|.||++.+++
T Consensus 58 ~~~~gkrrAvLiGINY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~s~~~~PT~~Nir~Al~wLV~~aq~ 137 (362)
T KOG1546|consen 58 PQMAGKRRAVLIGINYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDESPVRIPTGKNIRRALRWLVESAQP 137 (362)
T ss_pred ccccccceEEEEeecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCCcccccCcHHHHHHHHHHHHhcCCC
Confidence 33457888999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred CCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHhcccCCCeEEEEEeCCCCCCCCCchhhhc
Q 025578 119 GDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYN 198 (250)
Q Consensus 119 ~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~~l~~~~~v~~ilD~C~SG~~~~~~~~~~ 198 (250)
||.+||+|||||.+.++.+++|.+||||+|+|.|++.+|.|.++|+.+.|++++++++++++|+|+||||+..|.+++.+
T Consensus 138 gD~LvfHYSGHGtr~~~~~gDe~dG~DE~I~P~D~~t~G~iIdDe~~r~lV~plp~G~~lt~I~DSCHSGgliDlp~i~~ 217 (362)
T KOG1546|consen 138 GDSLVFHYSGHGTRQPDTNGDEVDGYDETIVPCDHNTQGPIIDDEIFRILVRPLPKGCKLTAISDSCHSGGLIDLPEIER 217 (362)
T ss_pred CCEEEEEecCCCCcCCCCCCCCCCCCcceeecccccccccccchHHHHHHHhccCCCceEEEEeecccCCCcccchhhee
Confidence 99999999999999999999999999999999999999989889999999999999999999999999999999887654
Q ss_pred ccc------ccccc-----------------------------CCC--CCcc------cccCCCCCEEEEeeeCCCCeee
Q 025578 199 KYQ------MTWED-----------------------------NRP--PSGA------RKATDGGLAICLSACQDNQLAS 235 (250)
Q Consensus 199 ~~~------~~~~~-----------------------------~~~--~~~~------~~~~~~g~~v~lsAc~~~Q~A~ 235 (250)
..+ --|++ ... +... ....+....|+||.|+.+|+|.
T Consensus 218 ~~~~ir~~~l~~e~~~d~l~~~tG~~~ge~~~i~~~l~d~f~~dts~~~~~~~~~~~~~~~~~~d~~illSgcqadqtSa 297 (362)
T KOG1546|consen 218 TKGVIRNRNLPWEDHRDLLKAQTGTDGGEVGKIRGCLDDIFGEDTSPLPNGTIGDLGRQLKDSHDNGILLSGCQADQTSA 297 (362)
T ss_pred cccccccCccchHHhHHHHHhhcCCCCceeeeeecchhhhhcccCCCCCCcchhhhhhhcccCCCCceEEeccccccccc
Confidence 331 00100 000 0000 0001123368899999999999
Q ss_pred ccC--CC--chhhhhhhh
Q 025578 236 DTS--VR--FFFFDYIFI 249 (250)
Q Consensus 236 E~~--~~--G~FT~aL~~ 249 (250)
+.. ++ |.|++|+.+
T Consensus 298 d~~~~G~~~gAms~Aiq~ 315 (362)
T KOG1546|consen 298 DASTYGHLYGAMSNAIQE 315 (362)
T ss_pred ccccCCcchhHHHHHHHH
Confidence 876 33 999998753
No 2
>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A ....
Probab=99.97 E-value=3e-32 Score=235.76 Aligned_cols=191 Identities=29% Similarity=0.477 Sum_probs=137.4
Q ss_pred eEEEEEeecCCCCCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEE
Q 025578 45 RRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVF 124 (250)
Q Consensus 45 ~~ALlIGi~Y~~~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~ 124 (250)
++||||||+||+...+|+||++|+.+|+++| +.+||+.+++ +..+ ||+++|+++|+++..+.+++|.++|
T Consensus 1 ~~AliIg~~~y~~~~~L~~~~~D~~~~~~~L-~~~gf~~~~~-l~~~--------~t~~~i~~~l~~l~~~~~~~D~~~~ 70 (248)
T PF00656_consen 1 KRALIIGVNYYQNPPPLPGAVNDAEAMAEAL-EKLGFDVENI-LIDN--------ATRANILKALRELLQRAQPGDSVVF 70 (248)
T ss_dssp EEEEEEEESSTSSTCHCTTHHHHHHHHHHHH-HHTTEEEEEE-EEES--------SSHHHHHHHHHHHHTSGGTCSEEEE
T ss_pred CEEEEEEeeCCCCCCCCCCHHHHHHHHHHHH-HHcCCceeec-cccc--------hHHHHHHHHHhhhhccCCCCCeeEE
Confidence 6999999996665699999999999999999 6899998877 4434 5999999999999998889999999
Q ss_pred EEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHhcccCCCeEEEEEeCCCCCCCCCchhhhcccccc-
Q 025578 125 YFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMT- 203 (250)
Q Consensus 125 yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~~l~~~~~v~~ilD~C~SG~~~~~~~~~~~~~~~- 203 (250)
||||||...++....+..+++++++|.|.. .+..+++..++.+.++.+.+ ++||||||||.+.+...........
T Consensus 71 yfsGHG~~~~~~~~~~~~~~d~~~~~~d~~---~~~~~~l~~~~~~~~~~~~k-~~ilD~C~sg~~~~~~~~~~~~~~~~ 146 (248)
T PF00656_consen 71 YFSGHGIQVDGEGGDEDSGYDGYLLPLDAN---LILDDELRDLLCKSLPKKPK-LFILDCCRSGGFIDGLSSSSGESSKR 146 (248)
T ss_dssp EEESEEETETTCCSTEEEETSSEEEEHHHH---EEHHHHTSTTTTGGGTTS-E-EEEEESESSSBTBCEEEEEESSSTSS
T ss_pred EEeccccccCCccCcccccccceeeecchh---hhHHHHHhhhhhhhccCCcc-EEeeccccCCccCCcccccccccccc
Confidence 999999886643222223456788888742 45666777665443555557 8999999999988654321111000
Q ss_pred ----cccCCCC--CcccccCCCCCEEEEeeeCCCCeeecc--CCCchhhhhhhh
Q 025578 204 ----WEDNRPP--SGARKATDGGLAICLSACQDNQLASDT--SVRFFFFDYIFI 249 (250)
Q Consensus 204 ----~~~~~~~--~~~~~~~~~g~~v~lsAc~~~Q~A~E~--~~~G~FT~aL~~ 249 (250)
.....++ ............++++||.++|+|+|. ..+|+||++|+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~~~~~s~e~~~~~~g~ft~~L~~ 200 (248)
T PF00656_consen 147 EERKLSSSIPPEDPNRSDVPSPSGFIVLSASRPGQTSYEDSPGSGGLFTYALLE 200 (248)
T ss_dssp -EECHCCCCCCSSCCSEEEETTTSEEEEESSSTTBCEEEECTTTEEHHHHHHHH
T ss_pred ccccccccccccccccccccCCCCcEEEEeccccceeecccCccCHHHHHHHHH
Confidence 0000011 111122234446889999999999999 357999999974
No 3
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=99.75 E-value=1.2e-16 Score=139.65 Aligned_cols=178 Identities=16% Similarity=0.144 Sum_probs=126.8
Q ss_pred CCeEEEEEeec-CCCCCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHH-hCCCCC
Q 025578 43 PSRRAVLCGVS-YNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVN-DCRKGD 120 (250)
Q Consensus 43 ~~~~ALlIGi~-Y~~~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~-~~~~~D 120 (250)
++++|||||+. |.....++.|+.+|+++|+++|+ .+||. |.+..| +|+.+|.++|+++.+ +.+..|
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~-~lgF~---V~~~~n--------lt~~~~~~~l~~f~~~~~~~~d 75 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFE-SLGYE---VEVKNN--------LTAEEILEELKEFASPDHSDSD 75 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHH-HCCCE---EEEeCC--------CCHHHHHHHHHHHHhccCCCCC
Confidence 78899999999 76546789999999999999997 69996 677777 499999999999985 678899
Q ss_pred EEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHh-c---ccCCCeEEEEEeCCCCCCCCCchhh
Q 025578 121 SLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK-P---LKEGVTLHAIVDACHSGTILDLEYV 196 (250)
Q Consensus 121 ~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~-~---l~~~~~v~~ilD~C~SG~~~~~~~~ 196 (250)
.+++||+|||... ++++.|. ..+.-++|.+.+.. . +....| ++|+|+|+...+......
T Consensus 76 ~~v~~~~sHG~~~-------------~l~~~D~---~~v~l~~i~~~f~~~~~~sl~~kPK-l~~iqACRg~~~~~~~~~ 138 (243)
T cd00032 76 SFVCVILSHGEEG-------------GIYGTDG---DVVPIDEITSLFNGDNCPSLAGKPK-LFFIQACRGDELDLGVEV 138 (243)
T ss_pred eeEEEECCCCCCC-------------EEEEecC---cEEEHHHHHHhhccCCCccccCCCc-EEEEECCCCCcCCCceec
Confidence 9999999999752 6889985 34666778777642 1 222345 699999998776533211
Q ss_pred hccccccc--ccCCCCCcccccCCCCCEEEEeeeCCCCeeeccC-CCchhhhhhhh
Q 025578 197 YNKYQMTW--EDNRPPSGARKATDGGLAICLSACQDNQLASDTS-VRFFFFDYIFI 249 (250)
Q Consensus 197 ~~~~~~~~--~~~~~~~~~~~~~~~g~~v~lsAc~~~Q~A~E~~-~~G~FT~aL~~ 249 (250)
........ .................+++..|+.++.+|++.. .+++|+++|..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~p~~~d~lv~ysT~pG~~a~r~~~~gS~fi~~l~~ 194 (243)
T cd00032 139 DSGADEPPDVETEAEDDAVQTIPVEADFLVAYSTVPGYVSWRNTKKGSWFIQSLCQ 194 (243)
T ss_pred cCccccccccccccccccccCCCCcccEEEEecCCCCeEeecCCCCCCEeHHHHHH
Confidence 10000000 0000001112223345577889999999999987 47999999874
No 4
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=99.72 E-value=6.2e-16 Score=134.95 Aligned_cols=177 Identities=15% Similarity=0.137 Sum_probs=124.7
Q ss_pred CCCeEEEEEeec-CCCCCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh--CCC
Q 025578 42 RPSRRAVLCGVS-YNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND--CRK 118 (250)
Q Consensus 42 ~~~~~ALlIGi~-Y~~~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~--~~~ 118 (250)
.++++|||||+. |.+ ..+++|+.+|+++|+++|+ .+||. |++..| +|+.+|.++++++.++ .+.
T Consensus 6 ~p~g~alII~n~~f~~-~~~r~g~~~D~~~l~~~f~-~lgF~---V~~~~d--------lt~~em~~~l~~~~~~~~~~~ 72 (241)
T smart00115 6 KPRGLALIINNENFHS-LPRRNGTDVDAENLTELFQ-SLGYE---VHVKNN--------LTAEEMLEELKEFAERPEHSD 72 (241)
T ss_pred CCCcEEEEEECccCCC-CcCCCCcHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHhccccCC
Confidence 468899999999 654 7889999999999999997 69997 677777 4999999999999874 457
Q ss_pred CCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHh----cccCCCeEEEEEeCCCCCCCCCch
Q 025578 119 GDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTILDLE 194 (250)
Q Consensus 119 ~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~----~l~~~~~v~~ilD~C~SG~~~~~~ 194 (250)
.|.++|||+|||... ++++.|.. .+..++|.+.+.. .+....| ++|+|+|+...+....
T Consensus 73 ~d~~v~~~~sHG~~~-------------~l~~~D~~---~v~l~~i~~~f~~~~c~~L~~kPK-lffiqACRg~~~~~g~ 135 (241)
T smart00115 73 SDSFVCVLLSHGEEG-------------GIYGTDHS---PLPLDEIFSLFNGDNCPSLAGKPK-LFFIQACRGDELDGGV 135 (241)
T ss_pred CCEEEEEEcCCCCCC-------------eEEEecCC---EEEHHHHHHhccccCChhhcCCCc-EEEEeCCCCCCCCCCe
Confidence 899999999999532 68899853 4666788877632 1223345 6999999976543221
Q ss_pred hhhcccccccccCCCCCcccccCCCCCEEEEeeeCCCCeeeccC-CCchhhhhhhh
Q 025578 195 YVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTS-VRFFFFDYIFI 249 (250)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~lsAc~~~Q~A~E~~-~~G~FT~aL~~ 249 (250)
.. ...+.....................++..|+.++.+||+.. .++.|+++|+.
T Consensus 136 ~~-~~~~~~~~~~~~~~~~~~~p~~~D~li~ysT~pG~va~r~~~~gS~fi~~L~~ 190 (241)
T smart00115 136 PV-EDDVDDPPTEFEDDAIYKIPVEADFLAAYSTTPGYVSWRNPTRGSWFIQSLCQ 190 (241)
T ss_pred ec-ccccccccccccccccccCCCcCcEEEEEeCCCCeEeecCCCCCchHHHHHHH
Confidence 10 00000000000011122223344577889999999999987 47999999974
No 5
>COG4249 Uncharacterized protein containing caspase domain [General function prediction only]
Probab=99.56 E-value=1.6e-14 Score=133.09 Aligned_cols=131 Identities=24% Similarity=0.376 Sum_probs=91.1
Q ss_pred cccHHHHHHHHHHHHHhCCCCCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCC-------CCcchHHHHHHHHHhc
Q 025578 99 SPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLK-------EGMIIDNDINSIIVKP 171 (250)
Q Consensus 99 ~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~-------~~~i~~~~L~~~L~~~ 171 (250)
.|++..|...|..+.+...+.|..+|||||||..... ++ ..+|+|.|.++ ++.++...+...+ .
T Consensus 113 ~p~~~~V~~~~lD~~~~~~~~d~~~~~fsG~g~~~~~------d~-~~~lia~~t~p~~~a~~~~~~~s~~~~~~~~--~ 183 (380)
T COG4249 113 LPARTKVRRVLLDAARDNPPADTILFFFSGHGATPGA------DG-RAYLIAFDTRPGAVAYDGEGGISPYSVAQAL--H 183 (380)
T ss_pred CCchhHHHHHHHHHhhcCchhhhhhheeeccccccCC------CC-ceeEEeecCChhhhcccCCCcccHHHHHHHH--H
Confidence 7789999999999999988899999999999998631 12 12899999875 3445555555443 2
Q ss_pred ccCCCeEEEEEeCCCCCCCCCchhhhcccccccccCCCCCcccccCCCCCEEEEeeeCCCCeeeccC--CCchhhhhhh
Q 025578 172 LKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTS--VRFFFFDYIF 248 (250)
Q Consensus 172 l~~~~~v~~ilD~C~SG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~lsAc~~~Q~A~E~~--~~G~FT~aL~ 248 (250)
+....+.++.+|+||+|.+..... +...-|. ......+.+. ..+.+|.++|.++|.+ +||+||+|++
T Consensus 184 ~~~~~~ql~~~d~~~~~~~~~~~~---~~~~p~l------~~s~~~~~~~-~~~~~~ap~~~~~e~~~~g~gv~t~al~ 252 (380)
T COG4249 184 LSEPGNQLVDLDACVRGDVFKATA---GQQRPWL------AQSLAREFGF-GILDSCAPDQQSAEAPELGHGVFTDALL 252 (380)
T ss_pred hccCCceeehhhhhcchhhhcccc---cccchHh------hhhhhcceee-eeccCCCCCccccccccccCceeehhhh
Confidence 333335689999999998874321 0000011 0011123444 4599999999999987 6899999987
No 6
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=99.54 E-value=1e-13 Score=121.95 Aligned_cols=150 Identities=20% Similarity=0.212 Sum_probs=103.4
Q ss_pred eEEEEEeec-CCCCCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCc-cC--C------------------------
Q 025578 45 RRAVLCGVS-YNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEE-KD--E------------------------ 96 (250)
Q Consensus 45 ~~ALlIGi~-Y~~~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~-a~--~------------------------ 96 (250)
+|||+|+-+ +... -+- ..|+-.++++|++ .|++++||.++...+ +. .
T Consensus 1 ~wAvlvagS~~~~N---YRh-~ad~~~~Y~~l~~-~G~~~~~Iil~~~dd~a~~~~Np~~g~i~~~~~~~n~y~~~~iDY 75 (256)
T PF01650_consen 1 NWAVLVAGSNGWFN---YRH-QADVCHAYQLLKR-NGIPDENIILMMYDDIACNPRNPFPGKIFNDPDGTNVYKGVEIDY 75 (256)
T ss_pred CEEEEEeccCCcee---eeE-ehHHHHHHHHHHH-cCCCCceEEEEecCCccchhhCCCCceEEeCCCcccccCCccccc
Confidence 599999998 3221 111 2899999999985 999999988876543 10 0
Q ss_pred -CCcccHHHHHHHHHHHHH-------hCCCCCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHH
Q 025578 97 -MYSPTKKNIQKALEWLVN-------DCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSII 168 (250)
Q Consensus 97 -~~~pT~~~I~~~l~~l~~-------~~~~~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L 168 (250)
....|.+++++.|.--.. +.+++|.|||||+|||...-- -+| ..+.|+..+|.++|
T Consensus 76 ~g~~v~~~~fl~vL~G~~~~~~~kvl~s~~~D~vfiy~~~HG~~~~l------------~~~----~~~~l~~~~L~~~L 139 (256)
T PF01650_consen 76 RGEDVTPENFLNVLTGDKSVPSGKVLNSTENDNVFIYFTGHGGPGFL------------KFP----DGEELTADDLADAL 139 (256)
T ss_pred cccccCHHHHHHHhcCCCCCCccccccCCCCCeEEEEEeccCCCCcc------------cCC----CcccccHHHHHHHH
Confidence 124566666666651111 467999999999999997631 112 12457888999888
Q ss_pred HhcccCC--CeEEEEEeCCCCCCCCCchhhhcccccccccCCCCCcccccCCCCCEEEEeeeCCCCeeecc
Q 025578 169 VKPLKEG--VTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDT 237 (250)
Q Consensus 169 ~~~l~~~--~~v~~ilD~C~SG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~lsAc~~~Q~A~E~ 237 (250)
...-.++ .++++++|+|+||++.+.- .....+++++||.++|.||..
T Consensus 140 ~~m~~~~~y~~lv~~veaC~SGs~~~~L----------------------~~~~nv~~iTAa~~~e~Sy~~ 188 (256)
T PF01650_consen 140 DKMHEKKRYKKLVFVVEACYSGSFFEGL----------------------LKSPNVYVITAANADESSYGC 188 (256)
T ss_pred HHHHhhCCcceEEEEEecccccchhhcc----------------------CCCCCEEEEecCCcccccccc
Confidence 6543222 4689999999999998541 011235679999999999976
No 7
>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=5e-07 Score=81.68 Aligned_cols=130 Identities=24% Similarity=0.317 Sum_probs=90.9
Q ss_pred CCCCeEEEEEeec--CCCCCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCc-cC----------------------
Q 025578 41 SRPSRRAVLCGVS--YNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEE-KD---------------------- 95 (250)
Q Consensus 41 ~~~~~~ALlIGi~--Y~~~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~-a~---------------------- 95 (250)
..+.+||++|+-+ |++... ..|+---+++|+ +.|.+++||+++.-.+ |+
T Consensus 42 dggt~waVLVAGSngyyNYRH-----QADvcHAYqiLr-kgGikeEnIvv~MYDDIA~~~~NPrpG~iiN~P~G~DvY~G 115 (477)
T KOG1348|consen 42 DGGTRWAVLVAGSNGYYNYRH-----QADVCHAYQILR-KGGIKEENIVVMMYDDIANNEENPRPGVIINRPNGKDVYQG 115 (477)
T ss_pred cCceeEEEEEecCCcccchhh-----hhhHHHHHHHHH-hcCCCchhEEEEEehhhhcCCCCCCCceeecCCCchhhhcC
Confidence 3479999998766 776432 378888899997 6899999988764432 11
Q ss_pred -----CCCcccHHHHHHHHHHH---HH-------hCCCCCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcch
Q 025578 96 -----EMYSPTKKNIQKALEWL---VN-------DCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMII 160 (250)
Q Consensus 96 -----~~~~pT~~~I~~~l~~l---~~-------~~~~~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~ 160 (250)
.-...|.+|+++.|.-= +. ...|+|.+|+||+-||...-- + .|. ...+.
T Consensus 116 vpkDYtg~~Vt~~Nf~aVllGd~savkGGsGKV~~SgpnDhiFiYytDHG~pGvl-------~-----mP~----~~~l~ 179 (477)
T KOG1348|consen 116 VPKDYTGEDVTPQNFLAVLLGDASAVKGGSGKVLKSGPNDHIFIYYTDHGGPGVL-------G-----MPT----SPDLY 179 (477)
T ss_pred CCCcccCCcCCHHHHHHHHhcccccccCCCceeeccCCCceEEEEEecCCCCceE-------e-----cCC----Ccchh
Confidence 11356888888887521 11 257999999999999987531 0 111 13466
Q ss_pred HHHHHHHHHhccc--CCCeEEEEEeCCCCCCCCC
Q 025578 161 DNDINSIIVKPLK--EGVTLHAIVDACHSGTILD 192 (250)
Q Consensus 161 ~~~L~~~L~~~l~--~~~~v~~ilD~C~SG~~~~ 192 (250)
..+|++.|.+.-+ +-.++++-+.+|-||++.+
T Consensus 180 akdlnevL~kmhk~k~Y~~mvfYlEACESGSmfe 213 (477)
T KOG1348|consen 180 AKDLNEVLKKMHKSKTYKKMVFYLEACESGSMFE 213 (477)
T ss_pred HHHHHHHHHHHHhccchheEEEEeeeccCcchhh
Confidence 6788888765433 3357899999999999985
No 8
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=3.6e-07 Score=79.04 Aligned_cols=164 Identities=15% Similarity=0.214 Sum_probs=106.7
Q ss_pred CCCeEEEEEeec--CCCCCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCc-c-C----------------------
Q 025578 42 RPSRRAVLCGVS--YNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEE-K-D---------------------- 95 (250)
Q Consensus 42 ~~~~~ALlIGi~--Y~~~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~-a-~---------------------- 95 (250)
..+.||++|..+ +++.. -+..+-.|+..++ ++|+++++|.+..-++ + +
T Consensus 26 htnNwAVLv~tSRfwfNYR-----H~aNvl~~YrsvK-rlGipDsqIilmladd~acn~RN~~pg~Vy~n~~~~~nlygd 99 (309)
T KOG1349|consen 26 HTNNWAVLVCTSRFWFNYR-----HVANVLSVYRSVK-RLGIPDSQIILMLADDMACNSRNPRPGTVYNNENHALNLYGD 99 (309)
T ss_pred ccCceEEEEecchhhhhHH-----HHHHHHHHHHHHH-HcCCCcccEEEEeccccccccCCCCCcceeccccccccccCC
Confidence 689999999999 44321 3466777888886 7999999987654432 1 0
Q ss_pred ------CCCcccHHHHHHHHHHHHH---------hCCCCCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcch
Q 025578 96 ------EMYSPTKKNIQKALEWLVN---------DCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMII 160 (250)
Q Consensus 96 ------~~~~pT~~~I~~~l~~l~~---------~~~~~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~ 160 (250)
...-.|-+++++.|..=.. ...++-.+++|..|||.-. +|--.|+ ..++
T Consensus 100 ~vevdyrgyevtvEnflr~LTgR~~~~tprSKrlltDe~SNIlIYmtGHGgd~-------------FlKFqd~---eelt 163 (309)
T KOG1349|consen 100 DVEVDYRGYEVTVENFLRVLTGRHPNNTPRSKRLLTDEGSNILIYLTGHGGDG-------------FLKFQDA---EELT 163 (309)
T ss_pred cceeecccchhHHHHHHHHHcCCCCCCCchhhhhcccCCCcEEEEEccCCCcc-------------ceecccH---HHhh
Confidence 0124466777766643000 1346778999999999743 2333333 2366
Q ss_pred HHHHHHHHHhcc--cCCCeEEEEEeCCCCCCCCCchhhhcccccccccCCCCCcccccCCCCCEEEEeeeCCCCeeeccC
Q 025578 161 DNDINSIIVKPL--KEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTS 238 (250)
Q Consensus 161 ~~~L~~~L~~~l--~~~~~v~~ilD~C~SG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~lsAc~~~Q~A~E~~ 238 (250)
.++|...+.+.- ++-..+++++|+|.+.++-+.- .++ +.+.+++|.-+|.|+...
T Consensus 164 s~dLadai~qm~e~~Ryneil~miDTCQaasly~~~----------------------~sP-NVLav~SS~~ge~SySh~ 220 (309)
T KOG1349|consen 164 SDDLADAIQQMWEKKRYNEILFMIDTCQAASLYERF----------------------YSP-NVLAVASSLVGEPSYSHH 220 (309)
T ss_pred hHHHHHHHHHHHHhhhhceEEEEeeccchHHHHHhh----------------------cCC-CeEEEeecccCCcccccC
Confidence 677776664431 2224688999999987665321 133 367799999999998764
Q ss_pred C---C-----chhhhhhhhC
Q 025578 239 V---R-----FFFFDYIFIF 250 (250)
Q Consensus 239 ~---~-----G~FT~aL~~~ 250 (250)
. = --||+|.+.|
T Consensus 221 ~d~~Igv~vIDrftyy~l~f 240 (309)
T KOG1349|consen 221 SDSDIGVYVIDRFTYYTLEF 240 (309)
T ss_pred CCcccceeeeccchHHHHHH
Confidence 2 1 4589998875
No 9
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=98.41 E-value=2.7e-06 Score=69.39 Aligned_cols=105 Identities=17% Similarity=0.295 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhhc-CCCc-ccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCcccCCCCCCCCC
Q 025578 65 INDVRNMRDLLINSF-KFQE-EGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETD 142 (250)
Q Consensus 65 ~~Da~~~~~~L~~~~-G~~~-~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~~~~~~~~~ 142 (250)
.+-.+.+.+.|++.+ .+.+ ..+....| ||.+++++.+..+.++++. +.++|||-|||...+..+|
T Consensus 43 ~~~~~~I~~~l~~qY~~~~~~~~~~~~~d--------pt~e~~~~~~~~~R~~a~~-~RvLFHYnGhGvP~Pt~~G---- 109 (154)
T PF14538_consen 43 SKASEEIGKNLQSQYESWQPRARYKQSLD--------PTVEDLKRLCQSLRRNAKD-ERVLFHYNGHGVPRPTENG---- 109 (154)
T ss_pred hhHHHHHHHHHHHHHHHhCccCcEEEecC--------CCHHHHHHHHHHHHhhCCC-ceEEEEECCCCCCCCCCCC----
Confidence 355666777776533 3432 23555555 6999999999999888765 9999999999999864332
Q ss_pred CceeeEEccCCCCCC--cchHHHHHHHHHhcccCCCeEEEEEeCCCCCCCCC
Q 025578 143 GFDETICPVDFLKEG--MIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILD 192 (250)
Q Consensus 143 g~d~~l~p~D~~~~~--~i~~~~L~~~L~~~l~~~~~v~~ilD~C~SG~~~~ 192 (250)
+-++ .|-..+. -++-.+|.+++. .-.++|+||.++|.+.+
T Consensus 110 ---eIw~-f~~~~tqyip~si~dL~~~lg------~Psi~V~DC~~AG~il~ 151 (154)
T PF14538_consen 110 ---EIWV-FNKNYTQYIPLSIYDLQSWLG------SPSIYVFDCSNAGSILN 151 (154)
T ss_pred ---eEEE-EcCCCCcceEEEHHHHHHhcC------CCEEEEEECCcHHHHHH
Confidence 1232 2322222 266678877762 23579999999998763
No 10
>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=2.8e-05 Score=67.91 Aligned_cols=165 Identities=15% Similarity=0.235 Sum_probs=107.6
Q ss_pred CCCCeEEEEEeec--CCCCCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCc-c-C---------------------
Q 025578 41 SRPSRRAVLCGVS--YNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEE-K-D--------------------- 95 (250)
Q Consensus 41 ~~~~~~ALlIGi~--Y~~~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~-a-~--------------------- 95 (250)
...+.||++|..+ +++.. -...+-.|+..++ +.|+++.+|.+...++ + +
T Consensus 25 t~tnNwAvLlstSRfwfNYR-----HmANVl~~Yr~vk-rlGipDsQIilm~~dd~acnsRnlfpgsvf~N~Dra~dlyg 98 (382)
T COG5206 25 TNTNNWAVLLSTSRFWFNYR-----HMANVLVFYRVVK-RLGIPDSQIILMSYDDQACNSRNLFPGSVFNNSDRAGDLYG 98 (382)
T ss_pred ccCCceEEEEecccceeehh-----hhhhHHHHHHHHH-HcCCCcceEEEEechhhhhhhcccCCcccccCcccccceeC
Confidence 4578999999998 44321 1256678889886 7999999987654432 1 0
Q ss_pred -------CCCcccHHHHHHHHHHHHHh---------CCCCCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcc
Q 025578 96 -------EMYSPTKKNIQKALEWLVND---------CRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMI 159 (250)
Q Consensus 96 -------~~~~pT~~~I~~~l~~l~~~---------~~~~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i 159 (250)
.-..+|.+.+.+.|...... ..+...+|+|..|||... +|--.|+ ..+
T Consensus 99 e~~eidY~gyevTve~firLLt~r~~en~p~sKrlltdE~SNIfIYmtGHGgd~-------------FlKFqda---eem 162 (382)
T COG5206 99 EDSEIDYSGYEVTVEVFIRLLTARSGENHPKSKRLLTDESSNIFIYMTGHGGDA-------------FLKFQDA---EEM 162 (382)
T ss_pred cccccccccccchHHHHHHHHHhhccCCChhhhhhcccccCcEEEEEccCCCcc-------------ceecccH---HHh
Confidence 12367888888777643221 345678999999999753 2322332 235
Q ss_pred hHHHHHHHHHhccc--CCCeEEEEEeCCCCCCCCCchhhhcccccccccCCCCCcccccCCCCCEEEEeeeCCCCeeecc
Q 025578 160 IDNDINSIIVKPLK--EGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDT 237 (250)
Q Consensus 160 ~~~~L~~~L~~~l~--~~~~v~~ilD~C~SG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~lsAc~~~Q~A~E~ 237 (250)
+.++|...+.+... +-..+++++|+|.+.++-+..+ ++ +.+++.++.-+|.|+..
T Consensus 163 tseDladai~ql~~~kRyNeIlfmiDTCQAnaly~k~y----------------------sP-NvLavgsSeig~ssySh 219 (382)
T COG5206 163 TSEDLADAISQLAAKKRYNEILFMIDTCQANALYDKSY----------------------SP-NVLAVGSSEIGQSSYSH 219 (382)
T ss_pred hhHHHHHHHHHHHHhhhhceEEEEeeccccchhhhhcc----------------------CC-ceEEEeccccCCccccc
Confidence 55667666544222 2236889999999876654321 22 36778999999999876
Q ss_pred CCC--------chhhhhhhhC
Q 025578 238 SVR--------FFFFDYIFIF 250 (250)
Q Consensus 238 ~~~--------G~FT~aL~~~ 250 (250)
... --||++.++|
T Consensus 220 hsd~~IgvaVIDrFty~~l~f 240 (382)
T COG5206 220 HSDSLIGVAVIDRFTYFFLKF 240 (382)
T ss_pred cchhhhhHHHhhcchHHHHHH
Confidence 421 4599998876
No 11
>PF12770 CHAT: CHAT domain
Probab=97.30 E-value=0.0027 Score=55.94 Aligned_cols=113 Identities=21% Similarity=0.298 Sum_probs=73.2
Q ss_pred EEEeecCCC-------CCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCC
Q 025578 48 VLCGVSYNK-------GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGD 120 (250)
Q Consensus 48 LlIGi~Y~~-------~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D 120 (250)
++||..... ...+|++....+..+++.+.. .+. .++...+ +|++++++.+ ...+
T Consensus 82 l~i~~p~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~-~~~-----~~~~~~~------at~~~l~~~l-------~~~~ 142 (287)
T PF12770_consen 82 LVIGNPDFGGSLIRGAALSPLPGAQREADALAELLGA-GGL-----RVLVGPE------ATKDALLEAL-------ERRG 142 (287)
T ss_pred EEEecCCCcccccccccccCchHHHHHHHHHHHHhcc-cce-----eEeeccC------CCHHHHHhhh-------ccCC
Confidence 777776322 137889999999988888853 222 3333443 4999998888 2344
Q ss_pred EEEEEEecCCcccCCCCCCCCCCceeeEEccCCCC--CCcchHHHHHHHHHhcccCCCeEEEEEeCCCCCCC
Q 025578 121 SLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLK--EGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTI 190 (250)
Q Consensus 121 ~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~--~~~i~~~~L~~~L~~~l~~~~~v~~ilD~C~SG~~ 190 (250)
.=+|||+|||....... ....|+..+... .+.++..+|.. + .++. .+ ++||-+|+|+..
T Consensus 143 ~~ilH~a~Hg~~~~~~~------~~~~l~l~~~~~~~~~~l~~~~l~~-l--~l~~-~~-lVvLsaC~s~~~ 203 (287)
T PF12770_consen 143 PDILHFAGHGTFDPDPP------DQSGLVLSDESGQEDGLLSAEELAQ-L--DLRG-PR-LVVLSACESASG 203 (287)
T ss_pred CCEEEEEcccccCCCCC------CCCEEEEeccCCCCCcccCHHHHHh-h--cCCC-CC-EEEecCcCCcCC
Confidence 55899999999983211 122566554332 45688888887 2 2332 34 599999999943
No 12
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.86 E-value=0.0044 Score=63.17 Aligned_cols=129 Identities=19% Similarity=0.261 Sum_probs=73.5
Q ss_pred ccHHHHHHHHHHHHHhCCCCCEEEEEEecCCcccCCCCCC---CCCCceeeEEccCCCCCCcchHHHHHHHHHhcccCCC
Q 025578 100 PTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNND---ETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGV 176 (250)
Q Consensus 100 pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~~~~~~---~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~~l~~~~ 176 (250)
||.+++++.-..+.+.+ .+|.|+|+|-|||+..+..+|. ...+|-+|+ | ++--||..||.. |
T Consensus 168 P~vddVrKlc~slRr~a-k~eRvLFHYNGHGVPkPT~nGEIWVFNK~fTQYI-P--------lsi~dLqsWl~a--P--- 232 (1387)
T KOG1517|consen 168 PTVDDVRKLCTSLRRNA-KEERVLFHYNGHGVPKPTANGEIWVFNKSFTQYI-P--------LSIFDLQSWLGA--P--- 232 (1387)
T ss_pred CcHHHHHHHHHHHhhhc-CCceEEEEecCCCCCCCCCCCcEEEEecCcceee-c--------ccHHHHHhhhcC--C---
Confidence 79999999888886655 5899999999999999876541 111232232 2 344578888732 2
Q ss_pred eEEEEEeCCCCCCCCCchhhhcccccccccCCCCCcccccCC----CCCEEEEeeeCCCCeeeccCCC--chhhh
Q 025578 177 TLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATD----GGLAICLSACQDNQLASDTSVR--FFFFD 245 (250)
Q Consensus 177 ~v~~ilD~C~SG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~v~lsAc~~~Q~A~E~~~~--G~FT~ 245 (250)
.+.|.||-.++.+.-.-..+......-.+...+.. ....+ -..+|.|+||.++|.=--.+.. -+||-
T Consensus 233 -~IyVydcssA~~Il~nf~~fae~~~~~~~~~~~~~-~~~ps~~~~y~dCi~LAaC~~~e~LPms~~lPADlFTs 305 (1387)
T KOG1517|consen 233 -TIYVYDCSSAENILVNFNRFAEQRDKMTDADQANA-LAFPSGTSRYKDCIHLAACDAHETLPMSPELPADLFTS 305 (1387)
T ss_pred -eEEEEeccchHHHHHHHHHHHHhhhcccccccccc-ccCCCCCcchhhhheeccCCcccccCCCCCccHHHHhh
Confidence 36889988777655211111100100000000101 11111 1347889999999976444432 56664
No 13
>COG4249 Uncharacterized protein containing caspase domain [General function prediction only]
Probab=96.82 E-value=0.00033 Score=65.03 Aligned_cols=170 Identities=21% Similarity=0.238 Sum_probs=115.5
Q ss_pred CCeEEEEEeec-CCCCCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCE
Q 025578 43 PSRRAVLCGVS-YNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDS 121 (250)
Q Consensus 43 ~~~~ALlIGi~-Y~~~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~ 121 (250)
.++-||+||++ |+. ...|..+.||+..|+.+|+ ..||+. +.-++. .+..++..|+.+..+++.=|+
T Consensus 2 ~~r~alvigns~~~~-aa~l~np~~da~~~a~~L~-~iGfdv---y~~~d~--------~~~~~~~~L~~f~~da~ga~~ 68 (380)
T COG4249 2 ERRVALVIGNSTYYV-AAPLANPANDAGAMALWLT-AIGFDV---YLDTDL--------PKSGLRRALRYFAEDAEGADV 68 (380)
T ss_pred CcceEEEeecCcccc-cccCCCchhhHHHHHHHHH-HcCcee---eccccc--------chHHHHhHHHHHHHHHHHHhH
Confidence 46789999999 776 6899999999999999998 689984 333332 678899999999999988899
Q ss_pred EEEEEecCCcccCCCCCCCCCCceeeEEccCCCCC-------CcchHHHHHHHHHhcccCCCeEEEEEeCCCCCCCCCch
Q 025578 122 LVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKE-------GMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLE 194 (250)
Q Consensus 122 v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~-------~~i~~~~L~~~L~~~l~~~~~v~~ilD~C~SG~~~~~~ 194 (250)
++|||||||.+... .+|++|.|.... ..+..+..... .+.+.+++ .+++|.|+.-...+..
T Consensus 69 al~~~aGhg~Q~~~---------~~~~~pv~~~~~~~~~~~~~~v~~~~~~~~--~p~~~~V~-~~~lD~~~~~~~~d~~ 136 (380)
T COG4249 69 ALIYYAGHGLQVDG---------TNYLLPVDADDVSPTFAVTEAVLIDCRLIP--LPARTKVR-RVLLDAARDNPPADTI 136 (380)
T ss_pred HHhhhccccccccC---------ccccccchhhhccccchhhhhhhhhhhccc--CCchhHHH-HHHHHHhhcCchhhhh
Confidence 99999999988753 237899887521 11222211111 11223333 4889999998875543
Q ss_pred hhh-cccccccccCCCCCcccccCCCCCEEEEeeeCCCCeeeccC-CCchhhhhhh
Q 025578 195 YVY-NKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTS-VRFFFFDYIF 248 (250)
Q Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~g~~v~lsAc~~~Q~A~E~~-~~G~FT~aL~ 248 (250)
..+ ++.+ ......+...++-++.++++.+++.. +++.|..++.
T Consensus 137 ~~~fsG~g-----------~~~~~d~~~~lia~~t~p~~~a~~~~~~~s~~~~~~~ 181 (380)
T COG4249 137 LFFFSGHG-----------ATPGADGRAYLIAFDTRPGAVAYDGEGGISPYSVAQA 181 (380)
T ss_pred hheeeccc-----------cccCCCCceeEEeecCChhhhcccCCCcccHHHHHHH
Confidence 221 1111 00102223367788899999998876 4688877654
No 14
>COG4995 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.75 E-value=3 Score=39.39 Aligned_cols=117 Identities=14% Similarity=0.117 Sum_probs=68.1
Q ss_pred CCCeEEEEEeecC-----CCCCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhC
Q 025578 42 RPSRRAVLCGVSY-----NKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDC 116 (250)
Q Consensus 42 ~~~~~ALlIGi~Y-----~~~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~ 116 (250)
..+-+++.-|..- .....+|+++...++.+++.+... .++.+.+ -|.++....++..
T Consensus 210 ~~~l~vl~~g~s~~~~~~~~~~~~Lp~~~~Ev~~Ia~~~~~~--------~~ll~q~------Ft~~~~~~~~~~~---- 271 (420)
T COG4995 210 QQNLKVLAAGLSEPSGPARTGFDALPFAALEVETIAAIFPPQ--------KLLLNQA------FTAANLAQEIDTK---- 271 (420)
T ss_pred ccchhHHHhccCcccccccccccccchHHHHHHHHHHhhhhH--------Hhhhccc------chhhHHhhhhhcC----
Confidence 3444555666552 123578999999999999887421 2333332 1444444444322
Q ss_pred CCCCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHh--cccCCCeEEEEEeCCCCCCC
Q 025578 117 RKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK--PLKEGVTLHAIVDACHSGTI 190 (250)
Q Consensus 117 ~~~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~--~l~~~~~v~~ilD~C~SG~~ 190 (250)
+-=++||++||.-... +..+.+|+.+|.+... +++..++.. ..+..+. ++||.+|-.|..
T Consensus 272 ---~~~vvHlATHg~f~s~------~p~~S~l~~~~~~~~~----~~~~~~~~~~~~~~~~vd-LvVLSACqTa~g 333 (420)
T COG4995 272 ---PYSVVHLATHGQFSSG------NPEDSFLLLWDGPINV----TELDILLRNRNNNLLPVE-LVVLSACQTALG 333 (420)
T ss_pred ---CCceEEEeccccccCC------CcccceeeecCCCCcc----cHHHHHHHhcccCCCCee-eEEEecchhccC
Confidence 3457899999988763 1234578888865432 233333222 1123345 599999999873
No 15
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=82.42 E-value=8.9 Score=35.90 Aligned_cols=80 Identities=19% Similarity=0.319 Sum_probs=48.1
Q ss_pred CCCeEEEEEeecCCCCCCCCcCcHHHHHHHHHHHHh--------hcCCC--cccEEEecCCccCCCCcccHHHHHHH--H
Q 025578 42 RPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLIN--------SFKFQ--EEGIIVLTEEEKDEMYSPTKKNIQKA--L 109 (250)
Q Consensus 42 ~~~~~ALlIGi~Y~~~~~~L~~a~~Da~~~~~~L~~--------~~G~~--~~~i~~L~d~~a~~~~~pT~~~I~~~--l 109 (250)
.++.++++||.+ +.+..=|+.+.+.+.. .+|+. -++|.++...++ .|....+... +
T Consensus 35 ~p~gr~~Vig~G--------KAs~~MA~a~~~~~~~~~~GvVVt~~g~~~~~~~ieViea~HP----vPDe~s~~asrrl 102 (422)
T COG2379 35 PPKGRTIVIGAG--------KASAEMARAFEEHWKGPLAGVVVTPYGYGGPCPRIEVIEAGHP----VPDEASLKASRRL 102 (422)
T ss_pred CCCCceEEEecc--------hhHHHHHHHHHHHhccccCceEeccCccCCCCCceeEEeCCCC----CCCchhHHHHHHH
Confidence 566688999998 3333444444444411 22332 245666655542 3444444443 2
Q ss_pred HHHHHhCCCCCEEEEEEecCCccc
Q 025578 110 EWLVNDCRKGDSLVFYFSGHGLRQ 133 (250)
Q Consensus 110 ~~l~~~~~~~D~v~~yfSGHG~~~ 133 (250)
-++++.++++|.|++..||-|.--
T Consensus 103 L~~v~~l~e~D~Vi~LISGGGSaL 126 (422)
T COG2379 103 LELVSGLTEDDLVIVLISGGGSAL 126 (422)
T ss_pred HHHhcCCCCCcEEEEEEeCCchhh
Confidence 345567889999999999988654
No 16
>PF12070 DUF3550: Protein of unknown function (DUF3550/UPF0682); InterPro: IPR022709 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 249 to 606 amino acids in length.
Probab=81.15 E-value=9.6 Score=36.96 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=32.6
Q ss_pred CcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCccc
Q 025578 98 YSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQ 133 (250)
Q Consensus 98 ~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~ 133 (250)
.+||-.+++.-|....+.+-++-.+++|.|.+|...
T Consensus 292 YrPT~sqll~~LAt~~kELP~n~~lLlYlSA~G~~~ 327 (513)
T PF12070_consen 292 YRPTFSQLLAFLATAFKELPPNGALLLYLSADGCFS 327 (513)
T ss_pred ecCCHHHHHHHHHHHHHhcCCCceEEEEEeccCccc
Confidence 479999999999999999999999999999999754
No 17
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=74.16 E-value=16 Score=33.45 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh-C----C-CCCEEEEEEecCCcccC
Q 025578 67 DVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND-C----R-KGDSLVFYFSGHGLRQP 134 (250)
Q Consensus 67 Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~-~----~-~~D~v~~yfSGHG~~~~ 134 (250)
-.+.+.+.+++ .|+...-=--++| .+||++-+.+++.+.+.+ + . ..|.|+++||.||....
T Consensus 174 Sln~l~r~~r~-~~~~~~~~wsiId------rW~t~~glIkafA~~I~keL~~F~~~~r~~VVIlFSAHslPms 240 (395)
T KOG1321|consen 174 SLNELWRQFRE-DGYERDIKWSIID------RWPTREGLIKAFAENIEKELQTFPEPVRDDVVILFSAHSLPMS 240 (395)
T ss_pred cHHHHHHHHHh-cCcccCCceEeec------cccccchHHHHHHHHHHHHHHhcCCcccccEEEEEecCCCcHH
Confidence 34456666653 4554421122334 367888888888765543 1 1 24788899999998864
No 18
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=73.89 E-value=19 Score=29.89 Aligned_cols=58 Identities=12% Similarity=0.329 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCccc
Q 025578 68 VRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQ 133 (250)
Q Consensus 68 a~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~ 133 (250)
-+...+-|.+..||...++..+.... |.++++++.+.+ ...-..|.|-++.+|||.-+
T Consensus 52 ~~~eid~l~~e~Gyk~~Dvvsv~~~~------pk~del~akF~~--EH~H~d~EvRy~vaG~GiF~ 109 (181)
T COG1791 52 YETEIDRLIRERGYKNRDVVSVSPSN------PKLDELRAKFLQ--EHLHTDDEVRYFVAGEGIFD 109 (181)
T ss_pred HHHHHHHHHHhhCCceeeEEEeCCCC------ccHHHHHHHHHH--HhccCCceEEEEEecceEEE
Confidence 34455556667899988888887765 688888887643 23557889999999999764
No 19
>PF03415 Peptidase_C11: Clostripain family This family belongs to family C11 of the peptidase classification.; InterPro: IPR005077 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C11 (clostripain family, clan CD). ; PDB: 3UWS_A.
Probab=72.12 E-value=14 Score=34.70 Aligned_cols=82 Identities=12% Similarity=0.169 Sum_probs=43.2
Q ss_pred cccHHHHHHHHHHHHHhCCCCCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCC-CCcchHHHHHHHHHhcccCCCe
Q 025578 99 SPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLK-EGMIIDNDINSIIVKPLKEGVT 177 (250)
Q Consensus 99 ~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~-~~~i~~~~L~~~L~~~l~~~~~ 177 (250)
..+.+.+.+-|.|..+.. |-|.-.+-+.+||.-....... ...-+..|-.. ...+.-.||.+.|. .+.+
T Consensus 77 m~dp~tL~~fi~~~~~~y-PA~~y~LIlw~HG~Gw~~~~~~-----~~rg~~~D~~~~~~~l~i~el~~aL~----~~~~ 146 (397)
T PF03415_consen 77 MGDPDTLSDFINWAKENY-PADRYGLILWDHGGGWLPASDS-----STRGIGFDETSGGDYLSIPELAEALE----GGPK 146 (397)
T ss_dssp TTSHHHHHHHHHHHHHHS--ECEEEEEEES-B-TT--TTGG-----G---EEEETTE---EE-HHHHHHHS------TT-
T ss_pred CCCHHHHHHHHHHHHHhC-CcccEEEEEEECCCCCCcCCCC-----CcceEecCCCChhhcccHHHHHHHHc----CCCC
Confidence 345666777777776654 7788889999999776321110 01122334322 34577788888774 2223
Q ss_pred E-EEEEeCCCCCCC
Q 025578 178 L-HAIVDACHSGTI 190 (250)
Q Consensus 178 v-~~ilD~C~SG~~ 190 (250)
+ ++.+|+|.-|.+
T Consensus 147 ~d~I~FDaClM~~v 160 (397)
T PF03415_consen 147 FDFIGFDACLMGSV 160 (397)
T ss_dssp EEEEEEESTT--BH
T ss_pred CcEEEECcccchhH
Confidence 2 699999998875
No 20
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=71.28 E-value=14 Score=33.17 Aligned_cols=64 Identities=20% Similarity=0.232 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHHHHhCCCCCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHhcccCCCeEEE
Q 025578 101 TKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHA 180 (250)
Q Consensus 101 T~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~~l~~~~~v~~ 180 (250)
..++|.++|+++... +.-..++.+.+|-|.-... ...+|.+.+. .+....++-+
T Consensus 119 ~l~~i~~~Ln~~~~~-~~v~i~~e~~agegs~~g~------------------------~F~~L~eii~-~~~~~~~igv 172 (280)
T COG0648 119 GLNRIAEALNELLEE-EGVIILLENTAGEGSGKGT------------------------QFGELAEIID-LIEEKERIGV 172 (280)
T ss_pred HHHHHHHHHHHHhhc-cCCeEEEEEeccccCcccc------------------------chhhHHHHHH-hhcccCceEE
Confidence 556777777777664 3345677888887665431 1135666552 3333346889
Q ss_pred EEeCCCCCCC
Q 025578 181 IVDACHSGTI 190 (250)
Q Consensus 181 ilD~C~SG~~ 190 (250)
.||+||.=+.
T Consensus 173 CiDtcH~~Aa 182 (280)
T COG0648 173 CIDTCHAFAA 182 (280)
T ss_pred EEEchhhhhc
Confidence 9999997443
No 21
>PF13660 DUF4147: Domain of unknown function (DUF4147); PDB: 1X3L_A 2B8N_A.
Probab=63.30 E-value=20 Score=31.37 Aligned_cols=75 Identities=19% Similarity=0.187 Sum_probs=42.1
Q ss_pred CCeEEEEEeecCCCCCCCCcCcHHHHHHHHHHHHhhcCCCc---------------ccEEEecCCccCCCCcccHHHHHH
Q 025578 43 PSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQE---------------EGIIVLTEEEKDEMYSPTKKNIQK 107 (250)
Q Consensus 43 ~~~~ALlIGi~Y~~~~~~L~~a~~Da~~~~~~L~~~~G~~~---------------~~i~~L~d~~a~~~~~pT~~~I~~ 107 (250)
..++..+||++ +. +..|++.+.+.+|-.. .++.++... +..|+...+..
T Consensus 39 ~~~~i~vvg~G--------KA----a~~MA~a~~~~lg~~i~~G~vv~~~g~~~~~~~i~v~~~~----HP~Pd~~s~~a 102 (238)
T PF13660_consen 39 KYGRIYVVGFG--------KA----AAPMAEAAEEILGDRIVGGLVVVPYGHESPLPRIEVLEGG----HPLPDENSVRA 102 (238)
T ss_dssp --SSEEEEEES--------TT----HHHHHHHHHHHCGGCEEEEEEEEETT-----TTSEEEEE-----SSS--HHHHHH
T ss_pred CCCCEEEEEeC--------HH----HHHHHHHHHHHhcccccCceEEeCCcccCCCCCEEEEECC----CCCCCHHHHHH
Confidence 34567888888 23 3456666655444221 223333222 45677777776
Q ss_pred H--HHHHHHhCCCCCEEEEEEecCCccc
Q 025578 108 A--LEWLVNDCRKGDSLVFYFSGHGLRQ 133 (250)
Q Consensus 108 ~--l~~l~~~~~~~D~v~~yfSGHG~~~ 133 (250)
+ +.+++++++++|.|+|..||=|.--
T Consensus 103 a~~il~~~~~~~~~dlvl~LiSGGgSAL 130 (238)
T PF13660_consen 103 ARRILELARELTEDDLVLVLISGGGSAL 130 (238)
T ss_dssp HHHHHHHHCC--TTSEEEEEE-TTHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEEecCChHHh
Confidence 5 4577888999999999999977543
No 22
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=62.14 E-value=41 Score=32.09 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=22.7
Q ss_pred CCC-cchHHHHHHHHHhcccCCCeEEEEEeCCCCCCCC
Q 025578 155 KEG-MIIDNDINSIIVKPLKEGVTLHAIVDACHSGTIL 191 (250)
Q Consensus 155 ~~~-~i~~~~L~~~L~~~l~~~~~v~~ilD~C~SG~~~ 191 (250)
++| .++.+++.+++. .. +...+++|.|=+|+....
T Consensus 203 PTG~~~s~e~l~~ll~-~a-~~~~~~iI~DE~Y~~~~f 238 (468)
T PLN02450 203 PLGTTTTRTELNLLVD-FI-TAKNIHLISDEIYSGTVF 238 (468)
T ss_pred CCCcccCHHHHHHHHH-HH-HHCCcEEEEEcccccccc
Confidence 344 467777777653 22 234678999999997543
No 23
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=55.77 E-value=34 Score=27.62 Aligned_cols=50 Identities=12% Similarity=0.244 Sum_probs=30.2
Q ss_pred CcHHHHHHHHHHHHhhcC----CCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEE
Q 025578 63 GTINDVRNMRDLLINSFK----FQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVF 124 (250)
Q Consensus 63 ~a~~Da~~~~~~L~~~~G----~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~ 124 (250)
|...=-++++++|.+++| +++++|.+... ....+...+.-+ ++|||.|++
T Consensus 93 G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~G---------a~~al~~l~~~l---~dpGD~VlV 146 (153)
T PLN02994 93 GLANFRKAIANFMAEARGGRVKFDADMIVLSAG---------ATAANEIIMFCI---ADPGDAFLV 146 (153)
T ss_pred CcHHHHHHHHHHHHHHhCCCCccchhheEEcCC---------HHHHHHHHHHHH---cCCCCEEEE
Confidence 344445578889977766 56777655433 233444433333 568998876
No 24
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.70 E-value=10 Score=31.42 Aligned_cols=37 Identities=27% Similarity=0.529 Sum_probs=23.8
Q ss_pred CCCCEEEEEEecCCcccCCCCCC-CCCCceeeEEccCCC
Q 025578 117 RKGDSLVFYFSGHGLRQPDFNND-ETDGFDETICPVDFL 154 (250)
Q Consensus 117 ~~~D~v~~yfSGHG~~~~~~~~~-~~~g~d~~l~p~D~~ 154 (250)
+.||.+++||+|-|...+..+.- -+..+| .++++|++
T Consensus 8 ~qgd~LIvyFaGwgtpps~v~HLilpeN~d-l~lcYDY~ 45 (214)
T COG2830 8 KQGDHLIVYFAGWGTPPSAVNHLILPENHD-LLLCYDYQ 45 (214)
T ss_pred cCCCEEEEEEecCCCCHHHHhhccCCCCCc-EEEEeehh
Confidence 57999999999999886533210 011122 57788875
No 25
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=55.30 E-value=72 Score=28.89 Aligned_cols=73 Identities=22% Similarity=0.275 Sum_probs=45.4
Q ss_pred CCCeEEEEEeecCCCCCCCCcCcHHHHHHHHHHHHhhc-CCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCC
Q 025578 42 RPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSF-KFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGD 120 (250)
Q Consensus 42 ~~~~~ALlIGi~Y~~~~~~L~~a~~Da~~~~~~L~~~~-G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D 120 (250)
...+.||+||=+- ..-.....++..+.+.|.+.. ... ..+.+-++.. |..++.++|..+.. +.+
T Consensus 145 ~~p~~avLIGG~s----~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~vttSRR-------Tp~~~~~~L~~~~~---~~~ 209 (311)
T PF06258_consen 145 PRPRVAVLIGGDS----KHYRWDEEDAERLLDQLAALAAAYG-GSLLVTTSRR-------TPPEAEAALRELLK---DNP 209 (311)
T ss_pred CCCeEEEEECcCC----CCcccCHHHHHHHHHHHHHHHHhCC-CeEEEEcCCC-------CcHHHHHHHHHhhc---CCC
Confidence 4678899999761 122345577777777776422 122 3356666654 88999998887754 345
Q ss_pred EEEEEEecCC
Q 025578 121 SLVFYFSGHG 130 (250)
Q Consensus 121 ~v~~yfSGHG 130 (250)
.+.+| +|.|
T Consensus 210 ~~~~~-~~~~ 218 (311)
T PF06258_consen 210 GVYIW-DGTG 218 (311)
T ss_pred ceEEe-cCCC
Confidence 55455 6666
No 26
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=52.01 E-value=51 Score=23.86 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=22.9
Q ss_pred ccHHHHHHHHHHHHHhCCCCCEEEEEEecCCccc
Q 025578 100 PTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQ 133 (250)
Q Consensus 100 pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~ 133 (250)
|+.+-+..+|..|++.- -+|+.|+|...
T Consensus 49 Ps~e~l~~~L~~Li~er------kIY~tg~GYfi 76 (80)
T PF10264_consen 49 PSQEVLYNTLGTLIKER------KIYHTGEGYFI 76 (80)
T ss_pred CCHHHHHHHHHHHHHcC------ceeeCCCceEe
Confidence 78999999999998753 38999998753
No 27
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=51.84 E-value=1.4e+02 Score=27.56 Aligned_cols=51 Identities=12% Similarity=0.240 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcC--CCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhC--CCCCEEEE----EEec
Q 025578 69 RNMRDLLINSFK--FQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDC--RKGDSLVF----YFSG 128 (250)
Q Consensus 69 ~~~~~~L~~~~G--~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~--~~~D~v~~----yfSG 128 (250)
+++++++.+.+| .++++|.+ ++. +.+.|...+..+.... .+||.|++ .|.|
T Consensus 81 ~aia~~~~~~~g~~v~~~~I~i-t~G--------a~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~ 139 (416)
T PRK09440 81 EALAALLNERYGWNISPQNIAL-TNG--------SQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIG 139 (416)
T ss_pred HHHHHHHHHHhCCCCChhhEEE-ccC--------hHHHHHHHHHHHhccccCCCCCeEEEecCCCchh
Confidence 456777765445 67778654 443 4555555555554321 36888887 6654
No 28
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=49.41 E-value=68 Score=25.14 Aligned_cols=43 Identities=28% Similarity=0.302 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHH
Q 025578 64 TINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLV 113 (250)
Q Consensus 64 a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~ 113 (250)
....++.|+++|.+. |++.++|.+...... |.+|+......+.
T Consensus 52 ~~~ea~~~~~~l~~~-gvp~~~I~~e~~s~~------T~ena~~~~~~~~ 94 (155)
T PF02698_consen 52 GRSEAEAMRDYLIEL-GVPEERIILEPKSTN------TYENARFSKRLLK 94 (155)
T ss_dssp TS-HHHHHHHHHHHT----GGGEEEE----S------HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc-ccchheeEccCCCCC------HHHHHHHHHHHHH
Confidence 458999999999864 999988877555433 9999999887665
No 29
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=49.20 E-value=56 Score=22.77 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhcCCCcc-cEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCC-CEEEEEE
Q 025578 66 NDVRNMRDLLINSFKFQEE-GIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKG-DSLVFYF 126 (250)
Q Consensus 66 ~Da~~~~~~L~~~~G~~~~-~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~-D~v~~yf 126 (250)
+....+++.|+ .+|.... .|... + .|..+....+..+...+.++ |.+.+|-
T Consensus 14 k~~~kv~k~L~-~~g~~iQ~SVf~~-~--------~~~~~~~~l~~~l~~~i~~~~d~i~i~~ 66 (78)
T PF09827_consen 14 KRRNKVRKILK-SYGTRIQYSVFEG-N--------LTNAELRKLRRELEKLIDPDEDSIRIYP 66 (78)
T ss_dssp HHHHHHHHHHH-HTTEEEETTEEEE-E--------E-HHHHHHHHHHHHHHSCTTTCEEEEEE
T ss_pred HHHHHHHHHHH-HhCccccceEEEE-E--------cCHHHHHHHHHHHHhhCCCCCCEEEEEE
Confidence 66788999997 5774322 24433 2 24555555555555556677 8888775
No 30
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=47.66 E-value=54 Score=25.61 Aligned_cols=46 Identities=17% Similarity=0.306 Sum_probs=33.8
Q ss_pred cEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCcc
Q 025578 85 GIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLR 132 (250)
Q Consensus 85 ~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~ 132 (250)
+|.+|.|...... ..++.+++++..+++++.++|.+-|+.-|+...
T Consensus 2 ~vvilvD~S~Sm~--g~~~~~k~al~~~l~~L~~~d~fnii~f~~~~~ 47 (155)
T PF13768_consen 2 DVVILVDTSGSMS--GEKELVKDALRAILRSLPPGDRFNIIAFGSSVR 47 (155)
T ss_pred eEEEEEeCCCCCC--CcHHHHHHHHHHHHHhCCCCCEEEEEEeCCEee
Confidence 5677777643111 222788888999999999999999998888644
No 31
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=43.97 E-value=2e+02 Score=26.54 Aligned_cols=110 Identities=13% Similarity=0.101 Sum_probs=59.1
Q ss_pred CcHHHHHHHHHHHHhhcC-CCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCcccC---CC--
Q 025578 63 GTINDVRNMRDLLINSFK-FQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQP---DF-- 136 (250)
Q Consensus 63 ~a~~Da~~~~~~L~~~~G-~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~---~~-- 136 (250)
|+..+...+.+.+.+.+| .++++|.+-.. .++++..+-... ..+||.+++-.-+.+.+.. ..
T Consensus 54 YPd~~~~~l~~a~a~~~~~~~~~~V~~gnG----------sde~i~~l~~~~--~~~gd~vl~~~Ptf~~Y~~~a~~~g~ 121 (356)
T COG0079 54 YPDPDYRELRAALAEYYGVVDPENVLVGNG----------SDELIELLVRAF--VEPGDTVLIPEPTFSMYEIAAQLAGA 121 (356)
T ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCC----------hHHHHHHHHHHh--hcCCCEEEEcCCChHHHHHHHHhcCC
Confidence 333467788888877778 67677654433 356666665544 4588998886433222210 00
Q ss_pred -----CCCC--CC----------CceeeEEccCCCCC-CcchHHHHHHHHHhcccCCCeEEEEEeCCCC
Q 025578 137 -----NNDE--TD----------GFDETICPVDFLKE-GMIIDNDINSIIVKPLKEGVTLHAIVDACHS 187 (250)
Q Consensus 137 -----~~~~--~~----------g~d~~l~p~D~~~~-~~i~~~~L~~~L~~~l~~~~~v~~ilD~C~S 187 (250)
.-.+ .+ ..+-.+++.=-.++ ..+..++|.+++. ..+. +.++|+|==|-
T Consensus 122 ~~~~v~~~~~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~-~~~~--~~~vVvDEAY~ 187 (356)
T COG0079 122 EVVKVPLKEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLE-ALPE--GGLVVIDEAYI 187 (356)
T ss_pred eEEEecccccccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHH-hCCC--CcEEEEeCchh
Confidence 0000 00 01112222212233 3688889998774 4443 56789997664
No 32
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.34 E-value=35 Score=26.77 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCCCCEEEEEEec
Q 025578 105 IQKALEWLVNDCRKGDSLVFYFSG 128 (250)
Q Consensus 105 I~~~l~~l~~~~~~~D~v~~yfSG 128 (250)
..+.|++++.+...|+.+|+||.|
T Consensus 11 g~e~~~~~~~~~~n~~~ifvlF~g 34 (128)
T KOG3425|consen 11 GYESFEETLKNVENGKTIFVLFLG 34 (128)
T ss_pred hHHHHHHHHHHHhCCceEEEEEec
Confidence 455677777777788999999997
No 33
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=39.99 E-value=1e+02 Score=25.89 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=40.1
Q ss_pred CCCeEEEEEeecCCCCCCCCcCcHHHHHHHHHHHHh-----hcCCCcccEEEecCCccCCCCcccHHHHHHHHH-HHHHh
Q 025578 42 RPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLIN-----SFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALE-WLVND 115 (250)
Q Consensus 42 ~~~~~ALlIGi~Y~~~~~~L~~a~~Da~~~~~~L~~-----~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~-~l~~~ 115 (250)
...++.+++|++ +...+|..++.-|.. +.|++ +..+.+....-....+-....+.+. ++...
T Consensus 39 ~~~~rI~~~G~G---------gSa~~A~~~a~~l~~~~~~~r~gl~---a~~l~~d~~~~ta~and~~~~~~f~~ql~~~ 106 (196)
T PRK10886 39 LNGNKILCCGNG---------TSAANAQHFAASMINRFETERPSLP---AIALNTDNVVLTAIANDRLHDEVYAKQVRAL 106 (196)
T ss_pred HcCCEEEEEECc---------HHHHHHHHHHHHHhccccccCCCcc---eEEecCcHHHHHHHhccccHHHHHHHHHHHc
Confidence 345788999998 344678888877643 44565 3444433210000000111122232 44455
Q ss_pred CCCCCEEEEEEecCCc
Q 025578 116 CRKGDSLVFYFSGHGL 131 (250)
Q Consensus 116 ~~~~D~v~~yfSGHG~ 131 (250)
.++||++++ +|+-|.
T Consensus 107 ~~~gDvli~-iS~SG~ 121 (196)
T PRK10886 107 GHAGDVLLA-ISTRGN 121 (196)
T ss_pred CCCCCEEEE-EeCCCC
Confidence 788998765 666444
No 34
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=39.73 E-value=1.6e+02 Score=25.93 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=30.6
Q ss_pred EEEEEeecCCC-CCCCCcCcHHHHHHHHHHHHhh---cCCCcccEEEecCC
Q 025578 46 RAVLCGVSYNK-GKFRLKGTINDVRNMRDLLINS---FKFQEEGIIVLTEE 92 (250)
Q Consensus 46 ~ALlIGi~Y~~-~~~~L~~a~~Da~~~~~~L~~~---~G~~~~~i~~L~d~ 92 (250)
-+.+|-++|.- +....+.+..|+.+...++.++ +|.++++|.+.-++
T Consensus 110 g~~vv~vdYrlaPe~~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdS 160 (312)
T COG0657 110 GAVVVSVDYRLAPEHPFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDS 160 (312)
T ss_pred CCEEEecCCCCCCCCCCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecC
Confidence 34566666654 2345677777777777777653 56777777776665
No 35
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=38.35 E-value=25 Score=27.63 Aligned_cols=17 Identities=35% Similarity=0.790 Sum_probs=11.9
Q ss_pred HHHhCCCCCEEEEEEec
Q 025578 112 LVNDCRKGDSLVFYFSG 128 (250)
Q Consensus 112 l~~~~~~~D~v~~yfSG 128 (250)
.+.++++||.++||=||
T Consensus 36 ~l~~mk~GD~vifY~s~ 52 (143)
T PF01878_consen 36 NLKRMKPGDKVIFYHSG 52 (143)
T ss_dssp HHHC--TT-EEEEEETS
T ss_pred hhhcCCCCCEEEEEEcC
Confidence 34578899999999999
No 36
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=37.94 E-value=2.8e+02 Score=24.28 Aligned_cols=61 Identities=15% Similarity=0.215 Sum_probs=37.9
Q ss_pred CCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCc
Q 025578 58 KFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGL 131 (250)
Q Consensus 58 ~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~ 131 (250)
..+|..+..-....++.+.+.+|-+ ++.++++. +...+...+..+ ++|||.|++---+|..
T Consensus 51 ~d~l~~~~g~i~~~~~~~A~~~ga~--~~~~~~~G--------st~a~~~~l~al---~~~gd~Vlv~~~~h~s 111 (294)
T cd00615 51 LDDLLDPTGPIKEAQELAARAFGAK--HTFFLVNG--------TSSSNKAVILAV---CGPGDKILIDRNCHKS 111 (294)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCC--CEEEEcCc--------HHHHHHHHHHHc---CCCCCEEEEeCCchHH
Confidence 3456555555666666666556643 46666664 344455545444 5799999998778854
No 37
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=36.85 E-value=1.8e+02 Score=25.30 Aligned_cols=58 Identities=16% Similarity=0.067 Sum_probs=33.5
Q ss_pred cCcHHHHHHHHHHHHhhcCCC--cccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCc
Q 025578 62 KGTINDVRNMRDLLINSFKFQ--EEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGL 131 (250)
Q Consensus 62 ~~a~~Da~~~~~~L~~~~G~~--~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~ 131 (250)
.+...=.+.++++|...+|+. .+++.+. +. +...+...+..+ .++||.+++-=.+|+.
T Consensus 36 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~-~~--------~t~a~~~~~~~~---~~~g~~vl~~~~~~~~ 95 (350)
T cd00609 36 PGLPELREAIAEWLGRRGGVDVPPEEIVVT-NG--------AQEALSLLLRAL---LNPGDEVLVPDPTYPG 95 (350)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCcceEEEe-cC--------cHHHHHHHHHHh---CCCCCEEEEcCCCchh
Confidence 344343456677776555542 3345443 32 456666666655 3578988887777763
No 38
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=36.66 E-value=1.1e+02 Score=23.73 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh
Q 025578 65 INDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND 115 (250)
Q Consensus 65 ~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~ 115 (250)
...+..|+++|. ..|.+++.|.+-..... |.+|+......+.+.
T Consensus 50 ~~ea~~m~~~l~-~~gv~~~~I~~e~~s~~------T~ena~~~~~~~~~~ 93 (150)
T cd06259 50 YSEAEAMARYLI-ELGVPAEAILLEDRSTN------TYENARFSAELLRER 93 (150)
T ss_pred CCHHHHHHHHHH-HcCCCHHHeeecCCCCC------HHHHHHHHHHHHHhc
Confidence 468899999998 47888877766544432 999999988877553
No 39
>PF01364 Peptidase_C25: Peptidase family C25 This family belongs to family C25 of the peptidase classification.; InterPro: IPR001769 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C25 (gingipain, clan CD). The protein fold of the peptidase domain for members of this entry resembles that of caspase 1, the type example for clan CD. This is a protein family found only in the bacteria. Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=36.53 E-value=61 Score=29.83 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=10.8
Q ss_pred EEEEEeCCCCCCCCC
Q 025578 178 LHAIVDACHSGTILD 192 (250)
Q Consensus 178 v~~ilD~C~SG~~~~ 192 (250)
-+++.-+|..|.+..
T Consensus 273 p~~~s~~C~~g~fd~ 287 (378)
T PF01364_consen 273 PVVISAACYTGNFDD 287 (378)
T ss_dssp -EEEEESSSTT-TTS
T ss_pred eEEEEeECCCcCCCC
Confidence 368888999999854
No 40
>PRK00809 hypothetical protein; Provisional
Probab=35.86 E-value=36 Score=27.34 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=15.9
Q ss_pred HHHhCCCCCEEEEEEec-CCcc
Q 025578 112 LVNDCRKGDSLVFYFSG-HGLR 132 (250)
Q Consensus 112 l~~~~~~~D~v~~yfSG-HG~~ 132 (250)
.+.+.++||.+|||-|+ +|..
T Consensus 31 ~lr~Mk~GD~v~fYhs~~~~~~ 52 (144)
T PRK00809 31 TIEKVKPGDKLIIYVSQEYGAE 52 (144)
T ss_pred HHhhCCCCCEEEEEECCccCCC
Confidence 34458899999999997 5533
No 41
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=34.64 E-value=1.1e+02 Score=27.33 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecC
Q 025578 68 VRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGH 129 (250)
Q Consensus 68 a~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGH 129 (250)
-.+|.+.|. ..||..-.+..-.+.. -...++...+..++...++||+|++.+...
T Consensus 21 ~~d~~~~~~-~~g~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~Dvv~~~~P~~ 75 (333)
T PRK09814 21 KNDVTKIAK-QLGFEELGIYFYNIKR------DSLSERSKRLDGILASLKPGDIVIFQFPTW 75 (333)
T ss_pred HHHHHHHHH-HCCCeEeEEEeccccc------chHHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 345667775 5799863333221111 135556667777788899999999988544
No 42
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=34.28 E-value=1.7e+02 Score=27.09 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=21.9
Q ss_pred CCC-cchHHHHHHHHHhcccCCCeEEEEEeCCCCCCC
Q 025578 155 KEG-MIIDNDINSIIVKPLKEGVTLHAIVDACHSGTI 190 (250)
Q Consensus 155 ~~~-~i~~~~L~~~L~~~l~~~~~v~~ilD~C~SG~~ 190 (250)
++| .++.+++.+++ +... ..++++|.|-+|..-.
T Consensus 182 PTG~~~s~~~~~~l~-~~a~-~~~~~ii~De~Y~~l~ 216 (409)
T PLN00143 182 PCGSVYSYEHLNKIA-ETAR-KLGILVIADEVYGHIV 216 (409)
T ss_pred CCCCccCHHHHHHHH-HHHH-HcCCeEEEEccccccc
Confidence 444 46677777765 3222 3357899999998644
No 43
>PTZ00377 alanine aminotransferase; Provisional
Probab=34.24 E-value=1.7e+02 Score=27.87 Aligned_cols=45 Identities=16% Similarity=0.264 Sum_probs=27.5
Q ss_pred HHHHHHHHhhcC--CCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEE
Q 025578 69 RNMRDLLINSFK--FQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVF 124 (250)
Q Consensus 69 ~~~~~~L~~~~G--~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~ 124 (250)
+++++++.+..| +++++|. +++. +.+.|...+..++. +|||.|++
T Consensus 122 ~aia~~~~~~~g~~~~~~~I~-it~G--------a~~al~~~~~~l~~--~~gD~Vlv 168 (481)
T PTZ00377 122 KAVAAFIERRDGVPKDPSDIF-LTDG--------ASSGIKLLLQLLIG--DPSDGVMI 168 (481)
T ss_pred HHHHHHHHHhcCCCCChhhEE-EcCC--------HHHHHHHHHHHhcc--CCCCEEEE
Confidence 456777765555 5667765 4443 45566665555532 48998877
No 44
>PRK03670 competence damage-inducible protein A; Provisional
Probab=33.22 E-value=1.9e+02 Score=25.32 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCcccCC
Q 025578 68 VRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPD 135 (250)
Q Consensus 68 a~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~~ 135 (250)
...+++.|. ..|++...+.++.| ..+.|.++++.+.++ ..|.|++- -|=|...+|
T Consensus 22 ~~~la~~L~-~~G~~v~~~~iV~D---------d~~~I~~~l~~a~~~--~~DlVItt-GGlGpt~dD 76 (252)
T PRK03670 22 SAFIAQKLT-EKGYWVRRITTVGD---------DVEEIKSVVLEILSR--KPEVLVIS-GGLGPTHDD 76 (252)
T ss_pred HHHHHHHHH-HCCCEEEEEEEcCC---------CHHHHHHHHHHHhhC--CCCEEEEC-CCccCCCCC
Confidence 446888886 58998777777777 467899888876542 35765544 565555444
No 45
>PRK06107 aspartate aminotransferase; Provisional
Probab=32.57 E-value=2.3e+02 Score=25.97 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=28.0
Q ss_pred HHHHHHHHhhcCC--CcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEE
Q 025578 69 RNMRDLLINSFKF--QEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFY 125 (250)
Q Consensus 69 ~~~~~~L~~~~G~--~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~y 125 (250)
++++++|.+.+|. .++||.+ ++. +...+...+..+ .++||.|++-
T Consensus 77 ~~ia~~l~~~~g~~~~~~~i~~-t~G--------~~~al~~~~~~~---~~~gd~vl~~ 123 (402)
T PRK06107 77 KAIIAKLERRNGLHYADNEITV-GGG--------AKQAIFLALMAT---LEAGDEVIIP 123 (402)
T ss_pred HHHHHHHHHhcCCCCChhhEEE-eCC--------HHHHHHHHHHHh---cCCCCEEEEe
Confidence 5777888766665 5677654 342 445555555433 5789988773
No 46
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=32.54 E-value=79 Score=22.39 Aligned_cols=56 Identities=14% Similarity=0.088 Sum_probs=34.6
Q ss_pred HHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHH--hCCCCCEEEEEEecCCccc
Q 025578 74 LLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVN--DCRKGDSLVFYFSGHGLRQ 133 (250)
Q Consensus 74 ~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~--~~~~~D~v~~yfSGHG~~~ 133 (250)
.+.+.+|++++.+..-..+- ...-...+.-.|.++.+ ++++||.++++=.|-|...
T Consensus 26 ~~~~~lgi~~~~~~~~~~~~----Gn~~sa~~~~~L~~~~~~g~~~~Gd~vl~~~~G~G~~~ 83 (90)
T PF08541_consen 26 SIAKRLGIPPERFPDNLAEY----GNTGSASIPINLADALEEGRIKPGDRVLLVGFGAGFSW 83 (90)
T ss_dssp HHHHHHTS-GGGBE-THHHH-----B-GGGHHHHHHHHHHHTTSSCTTEEEEEEEEETTTEE
T ss_pred HHHHHcCCcHHHHHHHHhcc----CcchhhhHHHHHHHHHHcCCCCCCCEEEEEEEEhhhee
Confidence 34456788887654321111 01234566666777777 6899999999988888654
No 47
>PRK08361 aspartate aminotransferase; Provisional
Probab=32.13 E-value=3.9e+02 Score=24.29 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcC--CCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCC
Q 025578 69 RNMRDLLINSFK--FQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHG 130 (250)
Q Consensus 69 ~~~~~~L~~~~G--~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG 130 (250)
+++++++.+.+| +++++|.+-.+ +.+.+...+..+ .++||.|++---+|.
T Consensus 77 ~~ia~~~~~~~g~~~~~~~i~~t~G---------~~~al~~~~~~l---~~~g~~Vlv~~p~y~ 128 (391)
T PRK08361 77 EAIAEYYKKFYGVDVDVDNVIVTAG---------AYEATYLAFESL---LEEGDEVIIPDPAFV 128 (391)
T ss_pred HHHHHHHHHHhCCCCCcccEEEeCC---------hHHHHHHHHHHh---cCCCCEEEEcCCCCc
Confidence 356666654444 66778765544 344555555544 468998887444443
No 48
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=31.85 E-value=87 Score=29.16 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=11.6
Q ss_pred EEEEeCCCCCCCCCc
Q 025578 179 HAIVDACHSGTILDL 193 (250)
Q Consensus 179 ~~ilD~C~SG~~~~~ 193 (250)
+.+|=-|-||.....
T Consensus 337 ~~lL~GCsS~~l~~~ 351 (383)
T PF03568_consen 337 VSLLMGCSSGRLKEQ 351 (383)
T ss_pred ceEEecCCccccccc
Confidence 467779999988754
No 49
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=31.63 E-value=2e+02 Score=20.85 Aligned_cols=53 Identities=11% Similarity=0.228 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhcCCCccc-EEEecCCc-cCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEec
Q 025578 68 VRNMRDLLINSFKFQEEG-IIVLTEEE-KDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSG 128 (250)
Q Consensus 68 a~~~~~~L~~~~G~~~~~-i~~L~d~~-a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSG 128 (250)
...+..+|+++.+.++++ +.+..+.. + |+.++....|- +.-++++.+++.||+
T Consensus 28 v~~~~~~lrk~L~l~~~~slflyvnn~f~-----p~~d~~~g~LY---~~~~~dGfLyi~Ys~ 82 (87)
T cd01612 28 FQAVIDFLRKRLKLKASDSLFLYINNSFA-----PSPDENVGNLY---RCFGTNGELIVSYCK 82 (87)
T ss_pred HHHHHHHHHHHhCCCccCeEEEEECCccC-----CCchhHHHHHH---HhcCCCCEEEEEEeC
Confidence 446778888888876544 77777763 3 45544444343 333467889999985
No 50
>PRK05942 aspartate aminotransferase; Provisional
Probab=30.77 E-value=3.3e+02 Score=24.89 Aligned_cols=47 Identities=9% Similarity=0.106 Sum_probs=27.5
Q ss_pred HHHHHHHHhhcC--CCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEE
Q 025578 69 RNMRDLLINSFK--FQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYF 126 (250)
Q Consensus 69 ~~~~~~L~~~~G--~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yf 126 (250)
+++++++.+.+| +.+++..++++. +.+.|...+..+ ++|||.|++--
T Consensus 80 ~aia~~~~~~~~~~~~~~~~i~vt~G--------~~~al~~~~~~~---~~~gd~Vlv~~ 128 (394)
T PRK05942 80 QAITDWYHRRYGVELDPDSEALPLLG--------SKEGLTHLALAY---VNPGDVVLVPS 128 (394)
T ss_pred HHHHHHHHHHHCCCcCCCCeEEEccC--------hHHHHHHHHHHh---CCCCCEEEEcC
Confidence 457777765556 456654444443 345555555444 57899887643
No 51
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=29.98 E-value=1.7e+02 Score=22.72 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCc
Q 025578 66 NDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGL 131 (250)
Q Consensus 66 ~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~ 131 (250)
.....++++|+ ..|+......++.| ..+.|.++|...+++ .|.+ |.--|=|.
T Consensus 17 ~n~~~l~~~l~-~~G~~v~~~~~v~D---------d~~~i~~~l~~~~~~---~D~V-ittGG~g~ 68 (144)
T PF00994_consen 17 SNGPFLAALLE-ELGIEVIRYGIVPD---------DPDAIKEALRRALDR---ADLV-ITTGGTGP 68 (144)
T ss_dssp HHHHHHHHHHH-HTTEEEEEEEEEES---------SHHHHHHHHHHHHHT---TSEE-EEESSSSS
T ss_pred hHHHHHHHHHH-HcCCeeeEEEEECC---------CHHHHHHHHHhhhcc---CCEE-EEcCCcCc
Confidence 45567888887 58998766777777 578999999776665 3655 44444443
No 52
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=29.68 E-value=65 Score=29.87 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHHhC--CCCCEEEEEEecCCcccC
Q 025578 101 TKKNIQKALEWLVNDC--RKGDSLVFYFSGHGLRQP 134 (250)
Q Consensus 101 T~~~I~~~l~~l~~~~--~~~D~v~~yfSGHG~~~~ 134 (250)
|...|..+++.....- .+.-+++|-|||||..+-
T Consensus 384 saHAi~~aid~A~~a~~~geekvI~fnlSGHGllDL 419 (432)
T COG1350 384 SAHAIKAAIDEALKAREEGEEKVILFNLSGHGLLDL 419 (432)
T ss_pred chhhHHHHHHHHHhccccCceeEEEEeccCccccch
Confidence 6677777776554322 233488999999999875
No 53
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=29.61 E-value=71 Score=26.04 Aligned_cols=46 Identities=15% Similarity=0.359 Sum_probs=35.0
Q ss_pred EEEEeecCCC-CCCCCcCcHHHHHHHHHHHHhh---cCCCcccEEEecCC
Q 025578 47 AVLCGVSYNK-GKFRLKGTINDVRNMRDLLINS---FKFQEEGIIVLTEE 92 (250)
Q Consensus 47 ALlIGi~Y~~-~~~~L~~a~~Da~~~~~~L~~~---~G~~~~~i~~L~d~ 92 (250)
+.++.++|.- +....+.+..|+.+..+++.++ +|++.++|.+.-++
T Consensus 30 ~~v~~~~Yrl~p~~~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~S 79 (211)
T PF07859_consen 30 FVVVSIDYRLAPEAPFPAALEDVKAAYRWLLKNADKLGIDPERIVLIGDS 79 (211)
T ss_dssp SEEEEEE---TTTSSTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEET
T ss_pred EEEEEeeccccccccccccccccccceeeeccccccccccccceEEeecc
Confidence 4678888865 3467788999999999999876 68988898887775
No 54
>TIGR01573 cas2 CRISPR-associated endoribonuclease Cas2. This model describes most members of the family of Cas2, one of the first four protein families found to mark prokaryotic genomes that contain multiple CRISPR elements. It is an endoribonuclease, capable of cleaving single-stranded RNA. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats. The cas genes are found near the repeats. A distinct branch of the Cas2 family shows a very low level of sequence identity and is modeled by TIGR01873 instead.
Probab=29.28 E-value=2.1e+02 Score=20.90 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHH-HHHHHhCCCCCEEEEEEec
Q 025578 65 INDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKAL-EWLVNDCRKGDSLVFYFSG 128 (250)
Q Consensus 65 ~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l-~~l~~~~~~~D~v~~yfSG 128 (250)
.+....+++.|. .+||..-+-.+..-. .|..+..+.+ ..+...+.+.|.|.+|--+
T Consensus 15 ~k~r~kv~k~L~-~~G~~rvQ~SVf~~~-------~~~~~~~~~l~~~l~~~i~~~dsv~i~~l~ 71 (95)
T TIGR01573 15 RKRRRKLRKLLE-KYGLQRVQYSVFEGI-------LEPNQLARKLIERLKRIIPDEGDIRIYPLT 71 (95)
T ss_pred HHHHHHHHHHHH-HcchhheeccEEEEE-------cCHHHHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 467888999997 588543221121111 2455555222 3333334567777777654
No 55
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=29.23 E-value=1.4e+02 Score=27.14 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEE
Q 025578 66 NDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFY 125 (250)
Q Consensus 66 ~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~y 125 (250)
.=-..+++.|.+.+|.+++++.+... ....+...+..+ ++|||.|++.
T Consensus 54 ~~~~~Le~~lA~~~g~~~e~ilv~~g---------g~~a~~~~~~al---~~~gd~Vli~ 101 (346)
T TIGR03576 54 IFEEKVQELGREHLGGPEEKILVFNR---------TSSAILATILAL---EPPGRKVVHY 101 (346)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEECC---------HHHHHHHHHHHh---CCCCCEEEEC
Confidence 33456677777677998888766544 345566666655 4689998764
No 56
>PLN02651 cysteine desulfurase
Probab=28.96 E-value=2.2e+02 Score=25.66 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh-CCCCCEEEEEEecCCc
Q 025578 68 VRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND-CRKGDSLVFYFSGHGL 131 (250)
Q Consensus 68 a~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~-~~~~D~v~~yfSGHG~ 131 (250)
.+.+++.|.+.+|.++++|.+- .. +.+.+..++..+... .++||.+++--..|..
T Consensus 45 ~~~~r~~la~~~g~~~~~v~~t-~~--------~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s 100 (364)
T PLN02651 45 VEKARAQVAALIGADPKEIIFT-SG--------ATESNNLAIKGVMHFYKDKKKHVITTQTEHKC 100 (364)
T ss_pred HHHHHHHHHHHhCCCCCeEEEe-CC--------HHHHHHHHHHHHHHhccCCCCEEEEcccccHH
Confidence 4455566666677776666544 43 344444445444332 4678988876666653
No 57
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=28.87 E-value=1.8e+02 Score=24.18 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=22.2
Q ss_pred CCCeEEEEEeecCCCCCCCCcCcHHHHHHHHHHHHhhc
Q 025578 42 RPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSF 79 (250)
Q Consensus 42 ~~~~~ALlIGi~Y~~~~~~L~~a~~Da~~~~~~L~~~~ 79 (250)
....+.|+-|++ |...||.-|+.-|..+|
T Consensus 39 ~~G~Kvl~cGNG---------gSaadAqHfaael~gRf 67 (176)
T COG0279 39 LNGNKVLACGNG---------GSAADAQHFAAELTGRF 67 (176)
T ss_pred HcCCEEEEECCC---------cchhhHHHHHHHHhhHH
Confidence 345678888887 45689999999888755
No 58
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=28.38 E-value=1.9e+02 Score=22.34 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEE
Q 025578 68 VRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVF 124 (250)
Q Consensus 68 a~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~ 124 (250)
...++++|. .+|+.......+.| ..+.|.++++.++++ .|.++.
T Consensus 21 ~~~l~~~l~-~~G~~v~~~~~v~D---------d~~~i~~~i~~~~~~---~Dlvit 64 (133)
T cd00758 21 GPALEALLE-DLGCEVIYAGVVPD---------DADSIRAALIEASRE---ADLVLT 64 (133)
T ss_pred HHHHHHHHH-HCCCEEEEeeecCC---------CHHHHHHHHHHHHhc---CCEEEE
Confidence 346788886 68887655555655 578899998877653 565543
No 59
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=28.00 E-value=2.9e+02 Score=23.20 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=25.7
Q ss_pred CeEEEEEeecCCCCCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCC
Q 025578 44 SRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEE 92 (250)
Q Consensus 44 ~~~ALlIGi~Y~~~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~ 92 (250)
.++.++||++ +.|.+-..=--.+.+.|.+++.++ ++|.++...
T Consensus 3 ~~rilVlGiG-----N~L~gDDGvG~~va~~L~~~~~~~-~~V~vid~G 45 (195)
T PRK10264 3 EQRVVVMGLG-----NLLWADEGFGVRVAERLYAHYHWP-EYVEIVDGG 45 (195)
T ss_pred CCCEEEEEeC-----ccccccCcHHHHHHHHHHhhcCCC-CCeEEEECC
Confidence 4578999998 445442222336777786555554 457666444
No 60
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=27.96 E-value=76 Score=31.28 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=13.0
Q ss_pred CEEEEEEecCCcccC
Q 025578 120 DSLVFYFSGHGLRQP 134 (250)
Q Consensus 120 D~v~~yfSGHG~~~~ 134 (250)
|..+||+|=||....
T Consensus 445 ~~~liY~SDHGEslg 459 (555)
T COG2194 445 NTSLIYFSDHGESLG 459 (555)
T ss_pred CeEEEEEcCccHhhc
Confidence 889999999998653
No 61
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=27.75 E-value=2.2e+02 Score=26.50 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEecCCcccC
Q 025578 102 KKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQP 134 (250)
Q Consensus 102 ~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~ 134 (250)
...+ .++..+.++..+++.|++.++|||..+.
T Consensus 347 aaal-aa~~~~~~~l~~~~~Vv~i~~g~G~~d~ 378 (385)
T TIGR00263 347 SHAL-AHLEKIAPTLPKDQIVVVNLSGRGDKDI 378 (385)
T ss_pred HHHH-HHHHHHHHhCCCCCeEEEEeCCCCcCCH
Confidence 3344 4444555667789999999999998764
No 62
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=27.57 E-value=2.9e+02 Score=24.88 Aligned_cols=56 Identities=11% Similarity=0.114 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCC
Q 025578 66 NDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHG 130 (250)
Q Consensus 66 ~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG 130 (250)
.-.+.+++.+.+.+|.++++|.+..+ +...+..++..+.....++|.+++--..|.
T Consensus 42 ~~~~~~r~~la~~~g~~~~~i~~t~~---------~t~a~~~al~~~~~~~~~~~~vv~~~~~~~ 97 (379)
T TIGR03402 42 KAVEEAREQVAKLLGAEPDEIIFTSG---------GTESDNTAIKSALAAQPEKRHIITTAVEHP 97 (379)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEeCc---------HHHHHHHHHHHHHHhcCCCCeEEEcccccH
Confidence 33556667777677877777655433 345555555554332345677777665663
No 63
>PRK06108 aspartate aminotransferase; Provisional
Probab=27.29 E-value=3.8e+02 Score=24.03 Aligned_cols=52 Identities=15% Similarity=0.045 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhcC--CCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecC
Q 025578 66 NDVRNMRDLLINSFK--FQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGH 129 (250)
Q Consensus 66 ~Da~~~~~~L~~~~G--~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGH 129 (250)
.=-+.+++++.+.+| .++++|.+-.+ +...+...+..+ .++||.|++---+|
T Consensus 65 ~lr~~la~~~~~~~~~~~~~~~i~~t~g---------~~~al~~~~~~l---~~~gd~vl~~~p~y 118 (382)
T PRK06108 65 ELREALARYVSRLHGVATPPERIAVTSS---------GVQALMLAAQAL---VGPGDEVVAVTPLW 118 (382)
T ss_pred HHHHHHHHHHHHHhCCCcCcceEEEeCC---------hHHHHHHHHHHh---cCCCCEEEEeCCCc
Confidence 334567777765557 67778765433 344555555544 46899887744333
No 64
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=26.45 E-value=2.3e+02 Score=26.02 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHHHHhCCCCCEEEEEEecCCcccC
Q 025578 101 TKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQP 134 (250)
Q Consensus 101 T~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~ 134 (250)
+...+-. +..+.++..+++.|++.++|||..+.
T Consensus 330 sgaalAa-~~~~~~~~~~~~~Vv~i~~g~G~k~~ 362 (365)
T cd06446 330 SSHAIAY-AIKLAKKLGKEKVIVVNLSGRGDKDL 362 (365)
T ss_pred chHHHHH-HHHHHHhcCCCCeEEEEeCCCCcccc
Confidence 3344433 33444444568899999999998764
No 65
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=26.41 E-value=3.9e+02 Score=23.10 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=8.9
Q ss_pred cCCCeEEEEEeCCC
Q 025578 173 KEGVTLHAIVDACH 186 (250)
Q Consensus 173 ~~~~~v~~ilD~C~ 186 (250)
.++.+++.|-|.-.
T Consensus 200 ~~ga~iI~IT~~~~ 213 (278)
T PRK11557 200 RVGAKVLAITGFTP 213 (278)
T ss_pred HcCCCEEEEcCCCC
Confidence 35678877766543
No 66
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=26.00 E-value=98 Score=24.16 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHH--HHHHHHHHHhCCCCCEEEEEEe
Q 025578 66 NDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNI--QKALEWLVNDCRKGDSLVFYFS 127 (250)
Q Consensus 66 ~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I--~~~l~~l~~~~~~~D~v~~yfS 127 (250)
+=+.++++.|++.+|++. . .|.- ...+| .....|+.++.+..|.|++-.|
T Consensus 16 ~~V~~la~~L~~~~g~~V---~--lD~~-------~~~~i~~~g~~~W~~~~~~~ad~Vliv~S 67 (150)
T PF08357_consen 16 EWVLALAEFLRQNCGIDV---I--LDQW-------ELNEIARQGPPRWMERQIREADKVLIVCS 67 (150)
T ss_pred HHHHHHHHHHHhccCCce---e--ecHH-------hhcccccCCHHHHHHHHHhcCCEEEEEec
Confidence 557799999987669873 2 2321 11121 2346788888888999999998
No 67
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=25.55 E-value=2.4e+02 Score=22.11 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEE
Q 025578 68 VRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFY 125 (250)
Q Consensus 68 a~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~y 125 (250)
...++++|. .+|+....+.++.| +.+.|.++|+++.+ ..|.++.-
T Consensus 29 ~~~l~~~l~-~~G~~v~~~~~v~D---------d~~~i~~~l~~~~~---~~DliItt 73 (144)
T TIGR00177 29 GPLLAALLE-EAGFNVSRLGIVPD---------DPEEIREILRKAVD---EADVVLTT 73 (144)
T ss_pred HHHHHHHHH-HCCCeEEEEeecCC---------CHHHHHHHHHHHHh---CCCEEEEC
Confidence 346788886 68988766667767 57788888887654 36666543
No 68
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=25.27 E-value=3.4e+02 Score=21.40 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEE
Q 025578 70 NMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVF 124 (250)
Q Consensus 70 ~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~ 124 (250)
.++++|+ ..|++.....++.| ..+.|.++++...++ ...|.++.
T Consensus 24 ~l~~~l~-~~G~~v~~~~~v~D---------d~~~i~~~l~~~~~~-~~~DlVit 67 (152)
T cd00886 24 ALVELLE-EAGHEVVAYEIVPD---------DKDEIREALIEWADE-DGVDLILT 67 (152)
T ss_pred HHHHHHH-HcCCeeeeEEEcCC---------CHHHHHHHHHHHHhc-CCCCEEEE
Confidence 5788886 68988766667777 467888888876652 13565543
No 69
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=25.24 E-value=1.3e+02 Score=26.74 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=14.5
Q ss_pred CcHHHHHHHHHHHHhhcCCCcccEEE
Q 025578 63 GTINDVRNMRDLLINSFKFQEEGIIV 88 (250)
Q Consensus 63 ~a~~Da~~~~~~L~~~~G~~~~~i~~ 88 (250)
+...|++++.++|++++| +++.|.+
T Consensus 110 n~y~Di~avye~Lr~~~g-~~~~Iil 134 (258)
T KOG1552|consen 110 NLYADIKAVYEWLRNRYG-SPERIIL 134 (258)
T ss_pred cchhhHHHHHHHHHhhcC-CCceEEE
Confidence 555666666666665555 5555444
No 70
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=24.34 E-value=2.1e+02 Score=26.64 Aligned_cols=109 Identities=19% Similarity=0.267 Sum_probs=59.7
Q ss_pred HHHHHHHHhhcC--CCccc-EEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecC-------------Ccc
Q 025578 69 RNMRDLLINSFK--FQEEG-IIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGH-------------GLR 132 (250)
Q Consensus 69 ~~~~~~L~~~~G--~~~~~-i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGH-------------G~~ 132 (250)
+++++++.+++| +.+++ |.+... +++.+..++..+ +.|||.|++-==+. -..
T Consensus 72 eaia~~~~~~~~~~~~~~~eiivt~G---------a~~al~~~~~a~---~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~ 139 (393)
T COG0436 72 EAIAEKYKRRYGLDVDPEEEIIVTAG---------AKEALFLAFLAL---LNPGDEVLIPDPGYPSYEAAVKLAGGKPVP 139 (393)
T ss_pred HHHHHHHHHHhCCCCCCCCeEEEeCC---------HHHHHHHHHHHh---cCCCCEEEEeCCCCcCHHHHHHhcCCEEEE
Confidence 467888877776 55555 655444 577887777776 45899877742111 111
Q ss_pred cCCCCCCCCCCc-------ee-------e-EEccCCCCCC-cchHHHHHHHHHhcccCCCeEEEEEeCCCCCCCCCc
Q 025578 133 QPDFNNDETDGF-------DE-------T-ICPVDFLKEG-MIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDL 193 (250)
Q Consensus 133 ~~~~~~~~~~g~-------d~-------~-l~p~D~~~~~-~i~~~~L~~~L~~~l~~~~~v~~ilD~C~SG~~~~~ 193 (250)
.+- ...+ +++ .+ . ++-+=.+++| ..+.++|.++. + +.+...+++|.|-||++-..+.
T Consensus 140 v~l-~~~~-~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~-~-~a~~~~i~ii~DEiY~~l~yd~ 212 (393)
T COG0436 140 VPL-DEEE-NGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIV-E-LAREHDIIIISDEIYEELVYDG 212 (393)
T ss_pred EeC-CcCc-cCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHH-H-HHHHcCeEEEEehhhhhcccCC
Confidence 110 0000 111 00 1 1111112345 45667777654 3 3334578999999999887764
No 71
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=24.12 E-value=1e+02 Score=25.57 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=22.3
Q ss_pred ceeeEEccCCCCCCcchHHHHHHHHHhcccCCCeEEEE
Q 025578 144 FDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAI 181 (250)
Q Consensus 144 ~d~~l~p~D~~~~~~i~~~~L~~~L~~~l~~~~~v~~i 181 (250)
+|++|+|+|-.... .|+.+|+.+.-.++.+++++
T Consensus 35 lDNTLv~wd~~~~t----pe~~~W~~e~k~~gi~v~vv 68 (175)
T COG2179 35 LDNTLVPWDNPDAT----PELRAWLAELKEAGIKVVVV 68 (175)
T ss_pred ccCceecccCCCCC----HHHHHHHHHHHhcCCEEEEE
Confidence 57799999964322 57888876543466776544
No 72
>PRK14012 cysteine desulfurase; Provisional
Probab=23.85 E-value=4.1e+02 Score=24.30 Aligned_cols=53 Identities=13% Similarity=0.143 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh-CCCCCEEEEEEecC
Q 025578 68 VRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND-CRKGDSLVFYFSGH 129 (250)
Q Consensus 68 a~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~-~~~~D~v~~yfSGH 129 (250)
.+.+++.+.+.+|.++++|.+..+ +.+.+.-++..+... .++||.|++-=..|
T Consensus 51 ~~~~r~~ia~~~g~~~~~v~~~~g---------~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~ 104 (404)
T PRK14012 51 VDIARNQIADLIGADPREIVFTSG---------ATESDNLAIKGAAHFYQKKGKHIITSKTEH 104 (404)
T ss_pred HHHHHHHHHHHcCcCcCeEEEeCC---------HHHHHHHHHHHHHHhhcCCCCEEEEecCcc
Confidence 455666776667877767655433 233444444433321 36899888754455
No 73
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=23.54 E-value=1.2e+02 Score=23.66 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHHHH------hCCCCCEEEEEEecCCccc
Q 025578 101 TKKNIQKALEWLVN------DCRKGDSLVFYFSGHGLRQ 133 (250)
Q Consensus 101 T~~~I~~~l~~l~~------~~~~~D~v~~yfSGHG~~~ 133 (250)
|+++|.++..+|+. ++++.|++-++|+--...+
T Consensus 14 ~~e~I~~at~eLl~~i~~~N~l~~~dIvSi~FT~T~DL~ 52 (118)
T PF07736_consen 14 TPEEILEATRELLEEILERNELSPEDIVSIIFTVTPDLD 52 (118)
T ss_dssp SHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEE-TT--
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCCCcC
Confidence 78888888776654 3789999999998544333
No 74
>PRK01215 competence damage-inducible protein A; Provisional
Probab=23.41 E-value=2.9e+02 Score=24.35 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCcccC
Q 025578 67 DVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQP 134 (250)
Q Consensus 67 Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~ 134 (250)
....+++.|. ..|+....+.++.| ..+.|.++|+....+ .|.|++- -|=|....
T Consensus 24 n~~~l~~~L~-~~G~~v~~~~~v~D---------d~~~I~~~l~~a~~~---~DlVItt-GG~g~t~d 77 (264)
T PRK01215 24 NASWIARRLT-YLGYTVRRITVVMD---------DIEEIVSAFREAIDR---ADVVVST-GGLGPTYD 77 (264)
T ss_pred hHHHHHHHHH-HCCCeEEEEEEeCC---------CHHHHHHHHHHHhcC---CCEEEEe-CCCcCChh
Confidence 3456888886 58998766667777 467899999887653 4766554 55444443
No 75
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=23.29 E-value=2.3e+02 Score=25.64 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=29.0
Q ss_pred HHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEec
Q 025578 70 NMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSG 128 (250)
Q Consensus 70 ~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSG 128 (250)
.+++.+.+.+|.++++|.+ ++. +.+.|...+..+ +++||.|++..-+
T Consensus 75 ~lr~~ia~~~~~~~~~i~~-t~G--------~~~~l~~~~~~~---~~~gd~vli~~P~ 121 (371)
T PRK05166 75 ALREAIAARTGVPADRIIL-GNG--------SEDLIAVICRAV---LRPGDRVVTLYPS 121 (371)
T ss_pred HHHHHHHHHhCcCHHHEEE-cCC--------HHHHHHHHHHHh---cCCCCEEEEcCCC
Confidence 5777777777888888754 342 334443333333 5789988876434
No 76
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=23.23 E-value=2.3e+02 Score=25.04 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCcccC
Q 025578 66 NDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQP 134 (250)
Q Consensus 66 ~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~ 134 (250)
..+.-+++.|. ..|++..+++++-|+ .+.|.++|+.+.++ -|.|+ .=-|=|=..+
T Consensus 21 tNa~~la~~L~-~~G~~v~~~~~VgD~---------~~~I~~~l~~a~~r---~D~vI-~tGGLGPT~D 75 (255)
T COG1058 21 TNAAFLADELT-ELGVDLARITTVGDN---------PDRIVEALREASER---ADVVI-TTGGLGPTHD 75 (255)
T ss_pred chHHHHHHHHH-hcCceEEEEEecCCC---------HHHHHHHHHHHHhC---CCEEE-ECCCcCCCcc
Confidence 45667899997 589999999999884 67999999988765 45443 3334444333
No 77
>PLN02618 tryptophan synthase, beta chain
Probab=23.00 E-value=2.9e+02 Score=26.13 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=19.9
Q ss_pred HHHHHHhCCCCCEEEEEEecCCcccC
Q 025578 109 LEWLVNDCRKGDSLVFYFSGHGLRQP 134 (250)
Q Consensus 109 l~~l~~~~~~~D~v~~yfSGHG~~~~ 134 (250)
..++.++..+++.+++-+||||..+.
T Consensus 374 a~~~a~~l~~~~~iVv~lsgrG~Kd~ 399 (410)
T PLN02618 374 LEKLCPTLPDGTKVVVNCSGRGDKDV 399 (410)
T ss_pred HHHHhHhcCCCCEEEEEeCCCCcCCH
Confidence 34455567789999999999997653
No 78
>PRK07591 threonine synthase; Validated
Probab=22.91 E-value=2.7e+02 Score=26.24 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHH--hCCCCCEEEEEEecCCcccCC
Q 025578 101 TKKNIQKALEWLVN--DCRKGDSLVFYFSGHGLRQPD 135 (250)
Q Consensus 101 T~~~I~~~l~~l~~--~~~~~D~v~~yfSGHG~~~~~ 135 (250)
+...-..++..+.+ .+++++.|++..+|||..+.+
T Consensus 359 ssaaalAal~~l~~~g~i~~~~~VV~i~tG~G~kd~~ 395 (421)
T PRK07591 359 AGGVTVAVLKKLVEAGKIDPDEETVVYITGNGLKTLE 395 (421)
T ss_pred hHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCccCCHH
Confidence 44444555666655 367899999999999998753
No 79
>PRK09105 putative aminotransferase; Provisional
Probab=22.73 E-value=2.2e+02 Score=25.99 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEec
Q 025578 67 DVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSG 128 (250)
Q Consensus 67 Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSG 128 (250)
....+++.+.+.+|.++++|.+-.+ +.+.|...+..+ .++||.|++.-=+
T Consensus 79 ~~~~Lr~aia~~~~v~~e~I~it~G---------s~~ai~~~~~~l---~~~gd~Vli~~P~ 128 (370)
T PRK09105 79 LEDDLRTLFAAQEGLPADHVMAYAG---------SSEPLNYAVLAF---TSPTAGLVTADPT 128 (370)
T ss_pred hHHHHHHHHHHHhCcChhhEEEcCC---------hHHHHHHHHHHH---cCCCCEEEEeCCC
Confidence 3556777787778999988765433 455666555555 4589988874333
No 80
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=22.72 E-value=4.9e+02 Score=24.94 Aligned_cols=68 Identities=10% Similarity=0.134 Sum_probs=40.9
Q ss_pred cCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCc
Q 025578 79 FKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGM 158 (250)
Q Consensus 79 ~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~ 158 (250)
+...++++.+|.+. +++..+|-+.+++++..=.+-.||=++|..
T Consensus 20 ~~~~~~~v~~l~~~----------~~f~~~Ll~~I~~Ak~~I~l~~y~~~~D~~-------------------------- 63 (451)
T PRK09428 20 IPQSPDDVETLYSP----------ADFRETLLEKIASAKKRIYIVALYLEDDEA-------------------------- 63 (451)
T ss_pred cccCcccEEEEcCH----------HHHHHHHHHHHHhcCCeEEEEEEEecCCch--------------------------
Confidence 34566789999774 466677766667776643333444332211
Q ss_pred chHHHHHHHHHhcc--cCCCeEEEEEeC
Q 025578 159 IIDNDINSIIVKPL--KEGVTLHAIVDA 184 (250)
Q Consensus 159 i~~~~L~~~L~~~l--~~~~~v~~ilD~ 184 (250)
..+|.+.|.+.. ..+++|-+++|.
T Consensus 64 --g~~il~AL~~a~~~~~gv~VrvLvD~ 89 (451)
T PRK09428 64 --GREILDALYQAKQQNPELDIKVLVDW 89 (451)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEEEc
Confidence 135555555432 368899999997
No 81
>COG2947 Uncharacterized conserved protein [Function unknown]
Probab=22.35 E-value=80 Score=25.55 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=14.8
Q ss_pred HHHHhCCCCCEEEEEEec
Q 025578 111 WLVNDCRKGDSLVFYFSG 128 (250)
Q Consensus 111 ~l~~~~~~~D~v~~yfSG 128 (250)
.++++.+.||.+|||=|-
T Consensus 37 NfmR~M~iGD~~fFYHSN 54 (156)
T COG2947 37 NFMRDMKIGDLGFFYHSN 54 (156)
T ss_pred HHHHhcccCceEEEEecC
Confidence 455668899999999886
No 82
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=22.20 E-value=2.7e+02 Score=26.36 Aligned_cols=33 Identities=33% Similarity=0.673 Sum_probs=20.3
Q ss_pred cHHHHHHHHHHHHHhCC-CCC--EEEEEEecCCcccC
Q 025578 101 TKKNIQKALEWLVNDCR-KGD--SLVFYFSGHGLRQP 134 (250)
Q Consensus 101 T~~~I~~~l~~l~~~~~-~~D--~v~~yfSGHG~~~~ 134 (250)
+...|..+++.. .+.+ +++ +++|..||||..+.
T Consensus 374 sa~alaaai~~a-~~~~~~~~~~vvv~~lsG~G~~d~ 409 (419)
T TIGR01415 374 SAHAIAAAIDEA-RKCRETGEEKVILFNLSGHGLLDL 409 (419)
T ss_pred HHHHHHHHHHHH-HhcCcCCCCeEEEEEcCCCCcCCH
Confidence 455555555433 3333 233 78888999999864
No 83
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=21.92 E-value=42 Score=14.16 Aligned_cols=6 Identities=50% Similarity=1.220 Sum_probs=4.4
Q ss_pred ccccCC
Q 025578 2 QICPRG 7 (250)
Q Consensus 2 ~~~~~~ 7 (250)
|-||+|
T Consensus 4 ~nCP~G 9 (9)
T PF00220_consen 4 RNCPIG 9 (9)
T ss_pred ccCCCC
Confidence 568875
No 84
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=21.83 E-value=3e+02 Score=24.78 Aligned_cols=55 Identities=15% Similarity=0.240 Sum_probs=39.0
Q ss_pred HHHHHHHhhcCCCc-ccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCccc
Q 025578 70 NMRDLLINSFKFQE-EGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQ 133 (250)
Q Consensus 70 ~~~~~L~~~~G~~~-~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~ 133 (250)
..++.+.+-+|.++ ++|.+..+ +...+...+..+....+++|.+++.-.+|....
T Consensus 47 ~~r~~la~~lg~~~~~~v~~~~~---------~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~ 102 (371)
T PF00266_consen 47 EAREALAKLLGAPPDEEVVFTSN---------GTEALNAVASSLLNPLKPGDEVLVTSNEHPSNR 102 (371)
T ss_dssp HHHHHHHHHHTSSTTEEEEEESS---------HHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHH
T ss_pred HHHHHHHHhcCCccccccccccc---------cchhhhhhhhccccccccccccccccccccccc
Confidence 45555555668887 67655544 334777777777666789999999999988665
No 85
>PRK07116 flavodoxin; Provisional
Probab=21.75 E-value=56 Score=26.15 Aligned_cols=14 Identities=43% Similarity=0.736 Sum_probs=11.6
Q ss_pred CEEEEEEecCCccc
Q 025578 120 DSLVFYFSGHGLRQ 133 (250)
Q Consensus 120 D~v~~yfSGHG~~~ 133 (250)
..+++|||++|...
T Consensus 4 k~lIvY~S~tGnT~ 17 (160)
T PRK07116 4 KTLVAYFSATGTTK 17 (160)
T ss_pred cEEEEEECCCCcHH
Confidence 37899999999764
No 86
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=21.73 E-value=6e+02 Score=23.91 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCC----CCCEEEEEEecCCcccC
Q 025578 67 DVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCR----KGDSLVFYFSGHGLRQP 134 (250)
Q Consensus 67 Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~----~~D~v~~yfSGHG~~~~ 134 (250)
.+..+.+.|++.+|-. .||. +. .||.+++.+|....++++ +=+.=++.|+|+-....
T Consensus 32 ~i~~v~~~l~~e~~~a-~nik---s~-------~~r~~v~~ai~~~~~rlk~~~~~p~nGlv~f~g~~~~~~ 92 (403)
T TIGR03676 32 QISDVVNQLRDEYSQA-ANIK---SK-------QTRKNVQSAIESIMQRLKLYKKPPENGLVLFAGMVPTGG 92 (403)
T ss_pred cHHHHHHHHHHHHhhh-hhhh---hh-------hhHHHHHHHHHHHHHHHhccCCCCCCeEEEEEeeecCCC
Confidence 3445666777666543 2442 22 499999999998887754 34567788899876643
No 87
>cd08588 PI-PLCc_At5g67130_like Catalytic domain of Arabidopsis thaliana PI-PLC X domain-containing protein At5g67130 and its uncharacterized homologs. This subfamily corresponds to the catalytic domain present in Arabidopsis thaliana PI-PLC X domain-containing protein At5g67130 and its uncharacterized homologs. Members in this family show high sequence similarity to bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participates in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG).
Probab=21.45 E-value=4.9e+02 Score=22.99 Aligned_cols=80 Identities=8% Similarity=0.118 Sum_probs=44.1
Q ss_pred ccHHHHHHHHHHHHHhCCCCCEEEEEEecCCcccCC-CCC-CCCCCceeeEEccCCCC---CCcchHHHHHHHHHhcccC
Q 025578 100 PTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPD-FNN-DETDGFDETICPVDFLK---EGMIIDNDINSIIVKPLKE 174 (250)
Q Consensus 100 pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~~-~~~-~~~~g~d~~l~p~D~~~---~~~i~~~~L~~~L~~~l~~ 174 (250)
.+.+++++.+..+++ ..|+++|++.|-=+...... ... -+..|+..++.+.+..+ ..+.+ |.+++ .+
T Consensus 76 ~~~~d~L~~i~~fL~-~nP~EvV~l~l~~~~~~~~~~~~~~~~~~gl~~~~y~p~~~~~~~~~WPT---L~emi----~~ 147 (270)
T cd08588 76 GPLSDVLREVVDFLD-ANPNEVVTLFLEDYVSPGPLLRSKLFRVAGLTDLVYVPDAMPWAGSDWPT---LGEMI----DA 147 (270)
T ss_pred ccHHHHHHHHHHHHH-hCCCcEEEEEEEeCCCcchHHHHHHhhhcCccceEEcCCCCcCCCCCCCC---HHHHH----hc
Confidence 467888888876664 47999999988644433221 000 01134544554332211 12333 44433 35
Q ss_pred CCeEEEEEeCCCC
Q 025578 175 GVTLHAIVDACHS 187 (250)
Q Consensus 175 ~~~v~~ilD~C~S 187 (250)
++|++++.|-...
T Consensus 148 gkRlvvf~~~~~~ 160 (270)
T cd08588 148 NKRLLVFTDNEDV 160 (270)
T ss_pred CCEEEEEEecCCC
Confidence 7788888888644
No 88
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=21.32 E-value=1.6e+02 Score=25.01 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhhcCCCc
Q 025578 65 INDVRNMRDLLINSFKFQE 83 (250)
Q Consensus 65 ~~Da~~~~~~L~~~~G~~~ 83 (250)
..+...|...|.++.+.+.
T Consensus 18 p~~l~~L~~~l~~~t~~~~ 36 (207)
T PF13709_consen 18 PAGLRNLSRFLNQRTSLEV 36 (207)
T ss_pred hhHHHHHHHHHHHHhCCCc
Confidence 4666777777776656543
No 89
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=21.28 E-value=3.4e+02 Score=20.76 Aligned_cols=49 Identities=18% Similarity=0.350 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCC
Q 025578 68 VRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHG 130 (250)
Q Consensus 68 a~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG 130 (250)
...++++|+ .+|+......++.| ..+.|.++++.+.+ ..|.+ +.--|=|
T Consensus 20 ~~~l~~~l~-~~G~~~~~~~~v~D---------d~~~I~~~l~~~~~---~~dli-ittGG~g 68 (135)
T smart00852 20 GPALAELLT-ELGIEVTRYVIVPD---------DKEAIKEALREALE---RADLV-ITTGGTG 68 (135)
T ss_pred HHHHHHHHH-HCCCeEEEEEEeCC---------CHHHHHHHHHHHHh---CCCEE-EEcCCCC
Confidence 346888886 58887655566655 57889999987764 35754 3334434
No 90
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=20.99 E-value=3.7e+02 Score=25.57 Aligned_cols=30 Identities=20% Similarity=0.260 Sum_probs=19.6
Q ss_pred CeEEEEEeec-CCCCCCCCcCcHHHHHHHHHHHHhhcCCC
Q 025578 44 SRRAVLCGVS-YNKGKFRLKGTINDVRNMRDLLINSFKFQ 82 (250)
Q Consensus 44 ~~~ALlIGi~-Y~~~~~~L~~a~~Da~~~~~~L~~~~G~~ 82 (250)
.++.+||||. |.+-.+. .+++-|+++-+|.
T Consensus 138 ~~~i~vvgi~g~~DF~p~---------l~a~~L~~~~~~~ 168 (419)
T TIGR03378 138 HDRILLVGIEGFRDFQPQ---------LAADNLKQHPQFA 168 (419)
T ss_pred cCcEEEEEcccccccCHH---------HHHHHHHhccccC
Confidence 4569999999 7663333 3777777653443
No 91
>PRK07324 transaminase; Validated
Probab=20.65 E-value=3.7e+02 Score=24.40 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=27.7
Q ss_pred HHHHHHHhhc-CCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecC
Q 025578 70 NMRDLLINSF-KFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGH 129 (250)
Q Consensus 70 ~~~~~L~~~~-G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGH 129 (250)
.+++.+.+.+ ++++++|.+..+ +...+...+..+ +.+||.|++-.-+|
T Consensus 66 ~lr~~ia~~~~~~~~~~vi~t~G---------~~~al~~~~~~l---~~~gd~Vl~~~P~y 114 (373)
T PRK07324 66 EFKEAVASLYQNVKPENILQTNG---------ATGANFLVLYAL---VEPGDHVISVYPTY 114 (373)
T ss_pred HHHHHHHHHhcCCChhhEEEcCC---------hHHHHHHHHHHh---CCCCCEEEEcCCCc
Confidence 4555555433 577788854433 344555555544 56899988844444
No 92
>PRK06260 threonine synthase; Validated
Probab=20.65 E-value=3.1e+02 Score=25.49 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=25.2
Q ss_pred ccHHHHHHHHHHHHHh--CCCCCEEEEEEecCCcccC
Q 025578 100 PTKKNIQKALEWLVND--CRKGDSLVFYFSGHGLRQP 134 (250)
Q Consensus 100 pT~~~I~~~l~~l~~~--~~~~D~v~~yfSGHG~~~~ 134 (250)
|+...-..++..+.++ +.+++.+++..+|||..+.
T Consensus 335 pssaaalAa~~~l~~~g~i~~~~~VV~i~tG~glK~~ 371 (397)
T PRK06260 335 PASAASVAGLIKLVEEGVIDKDERVVCITTGHLLKDP 371 (397)
T ss_pred chHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccCch
Confidence 3445555666666554 5678999999999998765
No 93
>PRK05569 flavodoxin; Provisional
Probab=20.27 E-value=64 Score=24.89 Aligned_cols=14 Identities=21% Similarity=0.359 Sum_probs=11.7
Q ss_pred CEEEEEEecCCccc
Q 025578 120 DSLVFYFSGHGLRQ 133 (250)
Q Consensus 120 D~v~~yfSGHG~~~ 133 (250)
.++++|||+||...
T Consensus 3 ki~iiY~S~tGnT~ 16 (141)
T PRK05569 3 KVSIIYWSCGGNVE 16 (141)
T ss_pred eEEEEEECCCCHHH
Confidence 47899999999764
No 94
>PF06720 Phi-29_GP16_7: Bacteriophage phi-29 early protein GP16.7; InterPro: IPR009595 The early-expressed gene 16.7 is conserved in bacteriophage phi-29 and related phages. It encodes a membrane protein, GP16.7, consisting of an N-terminal transmembrane domain and a C-terminal DNA-binding and dimerisation domain. GP16.7 plays an important role in organising membrane-associated bacteriophage DNA replication [, ]. The C-terminal domain has a similar secondary structure similar to homeodomains, but forms a fundamentally different tertiary structure consisting of a six-helical dimeric fold []. Multimerisation of this dimer leads to efficient DNA binding.; PDB: 2C5R_B 2BNK_A 1ZAE_B.
Probab=20.03 E-value=35 Score=26.30 Aligned_cols=14 Identities=21% Similarity=0.581 Sum_probs=0.0
Q ss_pred EEEEEEecCCcccC
Q 025578 121 SLVFYFSGHGLRQP 134 (250)
Q Consensus 121 ~v~~yfSGHG~~~~ 134 (250)
-++||||||-....
T Consensus 13 ~~if~~sg~n~~~~ 26 (130)
T PF06720_consen 13 CVIFLLSGRNNKKK 26 (130)
T ss_dssp --------------
T ss_pred HHHHHhcCcCccch
Confidence 36899999987764
Done!